Psyllid ID: psy790

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK
Secondary Structure (PSIPRED)
cEEEcccEEEEEEccccccccccccccccccEEcHHHHHHHccccccEEEEccccccccccccHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccEccccEEEEEEccccccccccccccccccEccHHHHHHHcccccEEEEEEccccccccEccHHHHHHHHc
Coil and Loop (DISEMBL)
mseaaggvpiyiplqdtspaepgrhkssadfkldpaeleskfssrTKLIIlntphnplgkvftreELEVIAK
Flexible Loop (DISEMBL)
mseaaggvpiyiplqdtspaEPGRHKSSADFKLDPAELESKFssrtkliilntphnplgkvftreeleviak
Low Complexity Region (SEG)
MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK
Disordered region (IsUnstruct)
**********************************************KLIILNTPHNPLGKVF**********
Disordered Region (DISOPRED)
MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK
Disordered Region (DISEMBL)
MSEAAGGVPIYIPLQDTS*********SADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK
Disordered Region (DISPRO)
*SEAAGGVPIYIPLQDTS********SSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	72	2.2.26 [Sep-21-2011]
Q71RI9	455	Kynurenine--oxoglutarate	yes	N/A	0.958	0.151	0.619	2e-18
Q6YP21	454	Kynurenine--oxoglutarate	yes	N/A	0.958	0.151	0.619	3e-18
Q58FK9	454	Kynurenine--oxoglutarate	yes	N/A	0.958	0.151	0.605	4e-18
Q0P5G4	455	Kynurenine--oxoglutarate	yes	N/A	0.958	0.151	0.591	3e-17
Q08415	457	Kynurenine--oxoglutarate	no	N/A	0.972	0.153	0.563	3e-17
Q8BTY1	424	Kynurenine--oxoglutarate	no	N/A	0.972	0.165	0.549	4e-16
Q16773	422	Kynurenine--oxoglutarate	no	N/A	0.972	0.165	0.535	2e-15
Q7T3E5	450	Kynurenine--oxoglutarate	no	N/A	0.958	0.153	0.549	1e-13
Q54KM6	435	Kynurenine--oxoglutarate	yes	N/A	0.930	0.154	0.442	1e-11
O14209	421	Uncharacterized aminotran	yes	N/A	0.875	0.149	0.485	8e-11

>sp|Q71RI9|KAT3_MOUSE Kynurenine--oxoglutarate transaminase 3 OS=Mus musculus GN=Ccbl2 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 54/71 (76%), Gaps = 2/71 (2%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M   AG VP++IPL+  S    G   +S+D+  DP ELESKFSS+TK IILNTPHNPLGK
Sbjct: 166 MVRMAGAVPVFIPLR--SKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGK 223

Query: 61  VFTREELEVIA 71
           V+TR+EL+VIA
Sbjct: 224 VYTRQELQVIA 234

Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). May catalyze the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond (By similarity). Has transaminase activity towards L-kynurenine, tryptophan, phenylalanine, serine, cysteine, methionine, histidine, glutamine and asparagine with glyoxylate as an amino group acceptor (in vitro). Has lower activity with 2-oxoglutarate as amino group acceptor (in vitro).
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 6EC: 3

>sp|Q6YP21|KAT3_HUMAN Kynurenine--oxoglutarate transaminase 3 OS=Homo sapiens GN=CCBL2 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 54/71 (76%), Gaps = 2/71 (2%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M   AG  P++IPL+  S    G+  SS+D+ LDP ELESKF+S+TK IILNTPHNPLGK
Sbjct: 165 MVRMAGATPVFIPLR--SKPVYGKRWSSSDWTLDPQELESKFNSKTKAIILNTPHNPLGK 222

Query: 61  VFTREELEVIA 71
           V+ REEL+VIA
Sbjct: 223 VYNREELQVIA 233

Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). May catalyze the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond (By similarity). Has transaminase activity towards L-kynurenine, tryptophan, phenylalanine, serine, cysteine, methionine, histidine, glutamine and asparagine with glyoxylate as an amino group acceptor (in vitro). Has lower activity with 2-oxoglutarate as amino group acceptor (in vitro).

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 3

>sp|Q58FK9|KAT3_RAT Kynurenine--oxoglutarate transaminase 3 OS=Rattus norvegicus GN=Ccbl2 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 55/71 (77%), Gaps = 2/71 (2%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M + AG VP++IPL+  S    G   +S+D+  +P ELESKFSS+TK IILNTPHNP+GK
Sbjct: 165 MVKMAGAVPVFIPLR--SKRTDGMKWTSSDWTFNPQELESKFSSKTKAIILNTPHNPIGK 222

Query: 61  VFTREELEVIA 71
           V+TREEL+VIA
Sbjct: 223 VYTREELQVIA 233

Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). May catalyze the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond (By similarity). Has transaminase activity towards L-kynurenine, tryptophan, phenylalanine, serine, cysteine, methionine, histidine, glutamine and asparagine with glyoxylate as an amino group acceptor (in vitro). Has lower activity with 2-oxoglutarate as amino group acceptor (in vitro).

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 3

>sp|Q0P5G4|KAT3_BOVIN Kynurenine--oxoglutarate transaminase 3 OS=Bos taurus GN=CCBL2 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/71 (59%), Positives = 55/71 (77%), Gaps = 2/71 (2%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M   AG  P+++PL+   P + G+  SS+D+ LDP EL SKF+S+TK IILNTPHNPLGK
Sbjct: 165 MVRMAGATPVFVPLR-CKPVD-GKKCSSSDWTLDPQELASKFNSKTKAIILNTPHNPLGK 222

Query: 61  VFTREELEVIA 71
           V+T+EEL+VIA
Sbjct: 223 VYTKEELQVIA 233

Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). May catalyze the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond (By similarity). Has transaminase activity towards L-kynurenine, tryptophan, phenylalanine, serine, cysteine, methionine, histidine, glutamine and asparagine with glyoxylate as an amino group acceptor (in vitro). Has lower activity with 2-oxoglutarate as amino group acceptor (in vitro).

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 3

>sp|Q08415|KAT1_RAT Kynurenine--oxoglutarate transaminase 1, mitochondrial OS=Rattus norvegicus GN=Ccbl1 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/71 (56%), Positives = 57/71 (80%), Gaps = 1/71 (1%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M+  AGG P+++ L+  SPA  G+  +S D++LDPAEL SKF+ RTK+++LNTP+NPLGK
Sbjct: 165 MTMMAGGCPVFVTLK-PSPAPKGKLGASNDWQLDPAELASKFTPRTKILVLNTPNNPLGK 223

Query: 61  VFTREELEVIA 71
           VF+R ELE++A
Sbjct: 224 VFSRMELELVA 234

Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). Metabolizes the cysteine conjugates of certain halogenated alkenes and alkanes to form reactive metabolites. Catalyzes the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 4

>sp|Q8BTY1|KAT1_MOUSE Kynurenine--oxoglutarate transaminase 1 OS=Mus musculus GN=Ccbl1 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/71 (54%), Positives = 57/71 (80%), Gaps = 1/71 (1%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M+  AGG P+++ L+  SPA  G+  SS D++LDP EL SKF+ RTK+++LNTP+NPLGK
Sbjct: 131 MTMMAGGRPVFVSLR-LSPAPKGQLGSSNDWQLDPTELASKFTPRTKILVLNTPNNPLGK 189

Query: 61  VFTREELEVIA 71
           VF+++ELE++A
Sbjct: 190 VFSKKELELVA 200

Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). Metabolizes the cysteine conjugates of certain halogenated alkenes and alkanes to form reactive metabolites. Catalyzes the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 4

>sp|Q16773|KAT1_HUMAN Kynurenine--oxoglutarate transaminase 1 OS=Homo sapiens GN=CCBL1 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/71 (53%), Positives = 55/71 (77%), Gaps = 1/71 (1%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M+  AGG P+++ L+   P + G   SS++++LDP EL  KF+SRTK ++LNTP+NPLGK
Sbjct: 131 MTMMAGGRPVFVSLK-PGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGK 189

Query: 61  VFTREELEVIA 71
           VF+REELE++A
Sbjct: 190 VFSREELELVA 200

Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). Metabolizes the cysteine conjugates of certain halogenated alkenes and alkanes to form reactive metabolites. Catalyzes the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 4

>sp|Q7T3E5|KAT3_DANRE Kynurenine--oxoglutarate transaminase 3 OS=Danio rerio GN=ccbl2 PE=2 SV=2

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 51/71 (71%), Gaps = 2/71 (2%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M + AG  P+ IPL+  S A  G   SSAD+ LD  EL SKF+S+TK II+NTP+NP+GK
Sbjct: 163 MVKMAGAKPVLIPLRLKSTATTG--ISSADWVLDQEELASKFNSKTKAIIVNTPNNPIGK 220

Query: 61  VFTREELEVIA 71
           +F+R EL+ IA
Sbjct: 221 IFSRSELQAIA 231

Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). May catalyze the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond (By similarity). Has transaminase activity towards L-kynurenine, tryptophan, phenylalanine, serine, cysteine, methionine, histidine, glutamine and asparagine with glyoxylate as an amino group acceptor (in vitro). Has lower activity with 2-oxoglutarate as amino group acceptor (in vitro).

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 3

>sp|Q54KM6|KAT_DICDI Kynurenine--oxoglutarate transaminase OS=Dictyostelium discoideum GN=ccbl PE=3 SV=1

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 51/70 (72%), Gaps = 3/70 (4%)

Query: 5   AGGVPIYIPLQDTSPAEPG---RHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKV 61
           AGG+P ++ L++   ++ G   + +SS  +K++  EL + F+ +TKLIILN PHNP+GKV
Sbjct: 144 AGGIPKFVTLKEEESSQAGSSDKKRSSKHWKINKEELAAAFTDKTKLIILNNPHNPVGKV 203

Query: 62  FTREELEVIA 71
           +++EEL+ IA
Sbjct: 204 YSKEELQEIA 213

Catalyzes the irreversible transamination of the L-tryptophan metabolite L-kynurenine to form kynurenic acid (KA). Metabolizes the cysteine conjugates of certain halogenated alkenes and alkanes to form reactive metabolites. Catalyzes the beta-elimination of S-conjugates and Se-conjugates of L-(seleno)cysteine, resulting in the cleavage of the C-S or C-Se bond.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 4

>sp|O14209|YDT4_SCHPO Uncharacterized aminotransferase C6B12.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6B12.04c PE=3 SV=1

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 5/68 (7%)

Query: 6   GGVPIYIPLQDTSPAEPGRHK--SSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFT 63
           GGVP+Y+P+    P E G  K  S+  +KLD  +L +  + +TK+I++NTPHNPLGK+F+
Sbjct: 139 GGVPVYVPI---IPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINTPHNPLGKIFS 195

Query: 64  REELEVIA 71
            EEL  IA
Sbjct: 196 EEELNEIA 203

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
442753409	418	Putative kynurenine aminotransferase glu	0.944	0.162	0.661	1e-19
241755422	353	kynurenine aminotransferase, putative [I	0.944	0.192	0.633	5e-19
311254836	453	PREDICTED: kynurenine--oxoglutarate tran	0.958	0.152	0.619	2e-17
363740347	376	PREDICTED: kynurenine--oxoglutarate tran	0.972	0.186	0.633	3e-17
118099302	456	PREDICTED: kynurenine--oxoglutarate tran	0.972	0.153	0.633	4e-17
349602836	455	Kynurenine--oxoglutarate transaminase 3-	0.958	0.151	0.619	6e-17
149709377	421	PREDICTED: kynurenine--oxoglutarate tran	0.958	0.163	0.619	6e-17
427785683	452	Putative kynurenine aminotransferase glu	0.944	0.150	0.625	6e-17
326930313	377	PREDICTED: kynurenine--oxoglutarate tran	0.986	0.188	0.625	8e-17
149410626	420	PREDICTED: kynurenine--oxoglutarate tran	0.958	0.164	0.619	9e-17

>gi|442753409|gb|JAA68864.1| Putative kynurenine aminotransferase glutamine transaminase k [Ixodes ricinus]

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/71 (66%), Positives = 60/71 (84%), Gaps = 3/71 (4%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M++ AGGVP+YIPL+   P + G   SSAD+ LDP ELESKFS++TK+II+NTPHNP+GK
Sbjct: 132 MTQMAGGVPVYIPLR---PKKTGESISSADWVLDPKELESKFSAKTKMIIINTPHNPIGK 188

Query: 61  VFTREELEVIA 71
           VF+REELE+IA
Sbjct: 189 VFSREELEMIA 199

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241755422|ref|XP_002401310.1| kynurenine aminotransferase, putative [Ixodes scapularis] gi|215508407|gb|EEC17861.1| kynurenine aminotransferase, putative [Ixodes scapularis]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/71 (63%), Positives = 60/71 (84%), Gaps = 3/71 (4%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           +++ A GVP+YIPL+   PA+ G++ SSAD+ LDP ELESKF+ +TK+I+LNTPHNP GK
Sbjct: 86  ITQIAEGVPVYIPLR---PAKDGKNVSSADWVLDPKELESKFNEKTKMIVLNTPHNPTGK 142

Query: 61  VFTREELEVIA 71
           VF+R+ELEVIA
Sbjct: 143 VFSRQELEVIA 153

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|311254836|ref|XP_003125974.1| PREDICTED: kynurenine--oxoglutarate transaminase 3 isoform 2 [Sus scrofa] gi|311254838|ref|XP_001929419.2| PREDICTED: kynurenine--oxoglutarate transaminase 3 isoform 1 [Sus scrofa]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 56/71 (78%), Gaps = 2/71 (2%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M   AGG P+++PL+ + P + G+   S+D+ LDP EL SKF+S+TK IILNTPHNPLGK
Sbjct: 163 MVSMAGGTPVFVPLR-SKPVD-GKRWCSSDWTLDPQELASKFNSKTKAIILNTPHNPLGK 220

Query: 61  VFTREELEVIA 71
           VFTREEL+VIA
Sbjct: 221 VFTREELQVIA 231

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|363740347|ref|XP_003642312.1| PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform 2 [Gallus gallus] gi|363740442|ref|XP_003642330.1| PREDICTED: kynurenine--oxoglutarate transaminase 1 isoform 1 [Gallus gallus]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/71 (63%), Positives = 58/71 (81%), Gaps = 1/71 (1%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M + AGG P+YIPL+  +P E G+  SSAD++LDPAEL SKFS +TK I+LN+P+NPLGK
Sbjct: 83  MVKMAGGTPVYIPLRPKAPKE-GKLMSSADWQLDPAELASKFSEQTKAIVLNSPNNPLGK 141

Query: 61  VFTREELEVIA 71
           VF+R ELE+IA
Sbjct: 142 VFSRGELELIA 152

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|118099302|ref|XP_415485.2| PREDICTED: kynurenine--oxoglutarate transaminase 1 isoform 2 [Gallus gallus] gi|363740345|ref|XP_003642311.1| PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform 1 [Gallus gallus]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/71 (63%), Positives = 58/71 (81%), Gaps = 1/71 (1%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M + AGG P+YIPL+  +P E G+  SSAD++LDPAEL SKFS +TK I+LN+P+NPLGK
Sbjct: 163 MVKMAGGTPVYIPLRPKAPKE-GKLMSSADWQLDPAELASKFSEQTKAIVLNSPNNPLGK 221

Query: 61  VFTREELEVIA 71
           VF+R ELE+IA
Sbjct: 222 VFSRGELELIA 232

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|349602836|gb|AEP98850.1| Kynurenine--oxoglutarate transaminase 3-like protein [Equus caballus]

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 56/71 (78%), Gaps = 2/71 (2%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M   AG  P+++PL+ + P + GR  SS+D+ LDP EL SKF+S+TK IILNTPHNPLGK
Sbjct: 165 MVRMAGATPVFVPLR-SKPVD-GRKWSSSDWTLDPQELASKFNSKTKAIILNTPHNPLGK 222

Query: 61  VFTREELEVIA 71
           V+TREEL+VIA
Sbjct: 223 VYTREELQVIA 233

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149709377|ref|XP_001495209.1| PREDICTED: kynurenine--oxoglutarate transaminase 3 isoform 1 [Equus caballus] gi|338725470|ref|XP_003365147.1| PREDICTED: kynurenine--oxoglutarate transaminase 3 isoform 2 [Equus caballus]

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 56/71 (78%), Gaps = 2/71 (2%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M   AG  P+++PL+ + P + GR  SS+D+ LDP EL SKF+S+TK IILNTPHNPLGK
Sbjct: 131 MVRMAGATPVFVPLR-SKPVD-GRKWSSSDWTLDPQELASKFNSKTKAIILNTPHNPLGK 188

Query: 61  VFTREELEVIA 71
           V+TREEL+VIA
Sbjct: 189 VYTREELQVIA 199

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|427785683|gb|JAA58293.1| Putative kynurenine aminotransferase glutamine transaminase k [Rhipicephalus pulchellus]

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/72 (62%), Positives = 60/72 (83%), Gaps = 4/72 (5%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M+  AGGVP++IPL+   P + G+  SSAD+ LDP EL SKF+S+TK+II+NTPHNP+GK
Sbjct: 171 MTLMAGGVPVFIPLR---PRKQGQ-ISSADWVLDPKELASKFTSKTKMIIVNTPHNPIGK 226

Query: 61  VFTREELEVIAK 72
           VF+REELE+IA+
Sbjct: 227 VFSREELEMIAE 238

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326930313|ref|XP_003211292.1| PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform 2 [Meleagris gallopavo]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/72 (62%), Positives = 58/72 (80%), Gaps = 1/72 (1%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEP-GRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLG 59
           M + AGG P+YIPL+  S +E  G+  SSAD++LDPAEL SKFS +TK I+LN+P+NPLG
Sbjct: 82  MVKMAGGTPVYIPLRPVSGSEQQGKLMSSADWQLDPAELASKFSEQTKAIVLNSPNNPLG 141

Query: 60  KVFTREELEVIA 71
           KVF+R ELE+IA
Sbjct: 142 KVFSRGELELIA 153

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149410626|ref|XP_001506967.1| PREDICTED: kynurenine--oxoglutarate transaminase 3 [Ornithorhynchus anatinus]

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 54/71 (76%), Gaps = 2/71 (2%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M    G  P++IPL+  S  + G   SSAD+KLDP EL SKF+S+TK IILNTPHNP+GK
Sbjct: 131 MVRMVGATPVFIPLRTKS--QIGSSWSSADWKLDPQELASKFNSKTKAIILNTPHNPIGK 188

Query: 61  VFTREELEVIA 71
           VFT+EEL+VIA
Sbjct: 189 VFTKEELQVIA 199

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
UNIPROTKB|E1BXL5	456	LOC100859686 "Uncharacterized	0.972	0.153	0.633	3.7e-18
UNIPROTKB|F1S4D5	430	CCBL2 "Uncharacterized protein	0.958	0.160	0.619	8.5e-18
UNIPROTKB|E2RPG4	455	CCBL2 "Uncharacterized protein	0.958	0.151	0.605	2.2e-17
MGI|MGI:2677849	455	Ccbl2 "cysteine conjugate-beta	0.958	0.151	0.619	2.8e-17
UNIPROTKB|Q6YP21	454	CCBL2 "Kynurenine--oxoglutarat	0.958	0.151	0.619	4.6e-17
UNIPROTKB|E1C934	419	CCBL2 "Uncharacterized protein	0.944	0.162	0.633	6e-17
RGD|1359262	454	Kat3 "kynurenine aminotransfer	0.958	0.151	0.605	1.3e-16
UNIPROTKB|Q0P5G4	455	CCBL2 "Kynurenine--oxoglutarat	0.958	0.151	0.591	1.3e-16
UNIPROTKB|D4A635	373	Ccbl1 "Kynurenine--oxoglutarat	0.972	0.187	0.563	1.8e-16
UNIPROTKB|F1MW71	357	LOC781863 "Uncharacterized pro	0.972	0.196	0.563	2.5e-16

UNIPROTKB|E1BXL5 LOC100859686 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 226 (84.6 bits), Expect = 3.7e-18, P = 3.7e-18
 Identities = 45/71 (63%), Positives = 58/71 (81%)

Query:     1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
             M + AGG P+YIPL+  +P E G+  SSAD++LDPAEL SKFS +TK I+LN+P+NPLGK
Sbjct:   163 MVKMAGGTPVYIPLRPKAPKE-GKLMSSADWQLDPAELASKFSEQTKAIVLNSPNNPLGK 221

Query:    61 VFTREELEVIA 71
             VF+R ELE+IA
Sbjct:   222 VFSRGELELIA 232

GO:0009058 "biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016212 "kynurenine-oxoglutarate transaminase activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0047312 "L-phenylalanine:pyruvate aminotransferase activity" evidence=IEA

GO:0047945 "L-glutamine:pyruvate aminotransferase activity" evidence=IEA

UNIPROTKB|F1S4D5 CCBL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 222 (83.2 bits), Expect = 8.5e-18, P = 8.5e-18
 Identities = 44/71 (61%), Positives = 56/71 (78%)

Query:     1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
             M   AGG P+++PL+ + P + G+   S+D+ LDP EL SKF+S+TK IILNTPHNPLGK
Sbjct:   140 MVSMAGGTPVFVPLR-SKPVD-GKRWCSSDWTLDPQELASKFNSKTKAIILNTPHNPLGK 197

Query:    61 VFTREELEVIA 71
             VFTREEL+VIA
Sbjct:   198 VFTREELQVIA 208

GO:0047315 "kynurenine-glyoxylate transaminase activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0016212 "kynurenine-oxoglutarate transaminase activity" evidence=IEA

GO:0006103 "2-oxoglutarate metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|E2RPG4 CCBL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 219 (82.2 bits), Expect = 2.2e-17, P = 2.2e-17
 Identities = 43/71 (60%), Positives = 57/71 (80%)

Query:     1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
             M   AGG P++IPL+ + P + G+  SS+D+ LDP EL SKF+S+TK IILNTPHNP+GK
Sbjct:   165 MVRMAGGTPVFIPLR-SKPVD-GKKWSSSDWTLDPQELASKFNSKTKAIILNTPHNPIGK 222

Query:    61 VFTREELEVIA 71
             V+T+EEL+VIA
Sbjct:   223 VYTKEELQVIA 233

GO:0047315 "kynurenine-glyoxylate transaminase activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0016212 "kynurenine-oxoglutarate transaminase activity" evidence=IEA

GO:0006103 "2-oxoglutarate metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

MGI|MGI:2677849 Ccbl2 "cysteine conjugate-beta lyase 2" [Mus musculus (taxid:10090)]

 Score = 218 (81.8 bits), Expect = 2.8e-17, P = 2.8e-17
 Identities = 44/71 (61%), Positives = 56/71 (78%)

Query:     1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
             M   AG VP++IPL+ + P + G   +S+D+  DP ELESKFSS+TK IILNTPHNPLGK
Sbjct:   166 MVRMAGAVPVFIPLR-SKPTD-GMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGK 223

Query:    61 VFTREELEVIA 71
             V+TR+EL+VIA
Sbjct:   224 VYTRQELQVIA 234

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006103 "2-oxoglutarate metabolic process" evidence=IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IDA

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016212 "kynurenine-oxoglutarate transaminase activity" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0047315 "kynurenine-glyoxylate transaminase activity" evidence=IDA

GO:0047804 "cysteine-S-conjugate beta-lyase activity" evidence=IEA

GO:0070189 "kynurenine metabolic process" evidence=IDA

UNIPROTKB|Q6YP21 CCBL2 "Kynurenine--oxoglutarate transaminase 3" [Homo sapiens (taxid:9606)]

 Score = 216 (81.1 bits), Expect = 4.6e-17, P = 4.6e-17
 Identities = 44/71 (61%), Positives = 55/71 (77%)

Query:     1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
             M   AG  P++IPL+ + P   G+  SS+D+ LDP ELESKF+S+TK IILNTPHNPLGK
Sbjct:   165 MVRMAGATPVFIPLR-SKPVY-GKRWSSSDWTLDPQELESKFNSKTKAIILNTPHNPLGK 222

Query:    61 VFTREELEVIA 71
             V+ REEL+VIA
Sbjct:   223 VYNREELQVIA 233

GO:0009058 "biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0047804 "cysteine-S-conjugate beta-lyase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006103 "2-oxoglutarate metabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0070189 "kynurenine metabolic process" evidence=ISS

GO:0047315 "kynurenine-glyoxylate transaminase activity" evidence=ISS

GO:0016212 "kynurenine-oxoglutarate transaminase activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0006569 "tryptophan catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|E1C934 CCBL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 214 (80.4 bits), Expect = 6.0e-17, P = 6.0e-17
 Identities = 45/71 (63%), Positives = 55/71 (77%)

Query:     1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
             M + AG  P++IPL+  +    G   SSAD+ LDPAEL SKF+S+TK IILNTPHNP+GK
Sbjct:   131 MVKMAGAKPVFIPLRYKNG---GNSASSADWILDPAELASKFNSKTKAIILNTPHNPIGK 187

Query:    61 VFTREELEVIA 71
             VFTREEL+VIA
Sbjct:   188 VFTREELQVIA 198

GO:0009058 "biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006103 "2-oxoglutarate metabolic process" evidence=IEA

GO:0016212 "kynurenine-oxoglutarate transaminase activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0047315 "kynurenine-glyoxylate transaminase activity" evidence=IEA

RGD|1359262 Kat3 "kynurenine aminotransferase III" [Rattus norvegicus (taxid:10116)]

 Score = 212 (79.7 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 43/71 (60%), Positives = 55/71 (77%)

Query:     1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
             M + AG VP++IPL+  S    G   +S+D+  +P ELESKFSS+TK IILNTPHNP+GK
Sbjct:   165 MVKMAGAVPVFIPLR--SKRTDGMKWTSSDWTFNPQELESKFSSKTKAIILNTPHNPIGK 222

Query:    61 VFTREELEVIA 71
             V+TREEL+VIA
Sbjct:   223 VYTREELQVIA 233

GO:0003824 "catalytic activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016212 "kynurenine-oxoglutarate transaminase activity" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0047315 "kynurenine-glyoxylate transaminase activity" evidence=ISS

GO:0047804 "cysteine-S-conjugate beta-lyase activity" evidence=IEA

GO:0070189 "kynurenine metabolic process" evidence=ISS

UNIPROTKB|Q0P5G4 CCBL2 "Kynurenine--oxoglutarate transaminase 3" [Bos taurus (taxid:9913)]

 Score = 212 (79.7 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 42/71 (59%), Positives = 55/71 (77%)

Query:     1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
             M   AG  P+++PL+   P + G+  SS+D+ LDP EL SKF+S+TK IILNTPHNPLGK
Sbjct:   165 MVRMAGATPVFVPLR-CKPVD-GKKCSSSDWTLDPQELASKFNSKTKAIILNTPHNPLGK 222

Query:    61 VFTREELEVIA 71
             V+T+EEL+VIA
Sbjct:   223 VYTKEELQVIA 233

GO:0016212 "kynurenine-oxoglutarate transaminase activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0047315 "kynurenine-glyoxylate transaminase activity" evidence=ISS

GO:0070189 "kynurenine metabolic process" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0006103 "2-oxoglutarate metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0047804 "cysteine-S-conjugate beta-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|D4A635 Ccbl1 "Kynurenine--oxoglutarate transaminase 1, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 208 (78.3 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 40/71 (56%), Positives = 57/71 (80%)

Query:     1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
             M+  AGG P+++ L+  SPA  G+  +S D++LDPAEL SKF+ RTK+++LNTP+NPLGK
Sbjct:    81 MTMMAGGCPVFVTLKP-SPAPKGKLGASNDWQLDPAELASKFTPRTKILVLNTPNNPLGK 139

Query:    61 VFTREELEVIA 71
             VF+R ELE++A
Sbjct:   140 VFSRMELELVA 150

GO:0003824 "catalytic activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|F1MW71 LOC781863 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 206 (77.6 bits), Expect = 2.5e-16, P = 2.5e-16
 Identities = 40/71 (56%), Positives = 56/71 (78%)

Query:     1 MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
             M+  AGG P+++ L+  SP + G   SS++++LDP EL SKF+SRTK  ILNTP+NPLGK
Sbjct:    64 MTLMAGGRPVFVSLKP-SPTQKGEPDSSSNWQLDPTELASKFTSRTKAFILNTPNNPLGK 122

Query:    61 VFTREELEVIA 71
             VF++EELE++A
Sbjct:   123 VFSKEELELVA 133

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0P5G4	KAT3_BOVIN	2, ., 6, ., 1, ., 6, 3	0.5915	0.9583	0.1516	yes	N/A
Q71RI9	KAT3_MOUSE	2, ., 6, ., 1, ., 6, 3	0.6197	0.9583	0.1516	yes	N/A
Q6YP21	KAT3_HUMAN	2, ., 6, ., 1, ., 6, 3	0.6197	0.9583	0.1519	yes	N/A
Q58FK9	KAT3_RAT	2, ., 6, ., 1, ., 6, 3	0.6056	0.9583	0.1519	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	72
PRK05764	393	PRK05764, PRK05764, aspartate aminotransferase; Pr	1e-16
COG0436	393	COG0436, COG0436, Aspartate/tyrosine/aromatic amin	1e-16
PRK08912	387	PRK08912, PRK08912, hypothetical protein; Provisio	2e-15
PRK07777	387	PRK07777, PRK07777, aminotransferase; Validated	6e-15
PLN00175	413	PLN00175, PLN00175, aminotransferase family protei	8e-13
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	1e-12
PRK09082	386	PRK09082, PRK09082, methionine aminotransferase; V	8e-12
PRK07682	378	PRK07682, PRK07682, hypothetical protein; Validate	1e-11
PRK06836	394	PRK06836, PRK06836, aspartate aminotransferase; Pr	1e-11
PRK06348	384	PRK06348, PRK06348, aspartate aminotransferase; Pr	2e-11
TIGR04350	384	TIGR04350, C_S_lyase_PatB, putative C-S lyase	3e-10
PRK06107	402	PRK06107, PRK06107, aspartate aminotransferase; Pr	5e-10
PRK06108	382	PRK06108, PRK06108, aspartate aminotransferase; Pr	1e-09
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	1e-09
COG1168	388	COG1168, MalY, Bifunctional PLP-dependent enzyme w	2e-09
PRK12414	384	PRK12414, PRK12414, putative aminotransferase; Pro	2e-08
PRK07568	397	PRK07568, PRK07568, aspartate aminotransferase; Pr	1e-07
COG0079	356	COG0079, HisC, Histidinol-phosphate/aromatic amino	3e-07
TIGR03947	359	TIGR03947, viomycin_VioD, capreomycidine synthase	4e-07
TIGR01141	346	TIGR01141, hisC, histidinol-phosphate aminotransfe	5e-07
PRK08361	391	PRK08361, PRK08361, aspartate aminotransferase; Pr	1e-06
PRK09265	404	PRK09265, PRK09265, aminotransferase AlaT; Validat	1e-06
PRK06225	380	PRK06225, PRK06225, aspartate aminotransferase; Pr	2e-06
PRK00950	361	PRK00950, PRK00950, histidinol-phosphate aminotran	3e-06
PRK07683	387	PRK07683, PRK07683, aminotransferase A; Validated	3e-06
TIGR01264	401	TIGR01264, tyr_amTase_E, tyrosine aminotransferase	5e-06
PRK07309	391	PRK07309, PRK07309, aromatic amino acid aminotrans	1e-05
PRK07324	373	PRK07324, PRK07324, transaminase; Validated	4e-05
TIGR01265	403	TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine	5e-05
PRK13355	517	PRK13355, PRK13355, bifunctional HTH-domain contai	1e-04
COG2008	342	COG2008, GLY1, Threonine aldolase [Amino acid tran	2e-04
PRK08363	398	PRK08363, PRK08363, alanine aminotransferase; Vali	2e-04
PRK07337	388	PRK07337, PRK07337, aminotransferase; Validated	2e-04
PRK03321	352	PRK03321, PRK03321, putative aminotransferase; Pro	4e-04
PRK07392	360	PRK07392, PRK07392, threonine-phosphate decarboxyl	6e-04
PTZ00433	412	PTZ00433, PTZ00433, tyrosine aminotransferase; Pro	7e-04
PRK06207	405	PRK06207, PRK06207, aspartate aminotransferase; Pr	0.001
PRK02731	367	PRK02731, PRK02731, histidinol-phosphate aminotran	0.002
TIGR03538	393	TIGR03538, DapC_gpp, succinyldiaminopimelate trans	0.003

>gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional

 Score = 71.7 bits (177), Expect = 1e-16
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 11/69 (15%)

Query: 4   AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFT 63
            AGGVP+++P                 FKL   +LE+  + +TK +ILN+P NP G V++
Sbjct: 134 LAGGVPVFVPT-----------GEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYS 182

Query: 64  REELEVIAK 72
            EELE IA 
Sbjct: 183 PEELEAIAD 191

Length = 393

>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score = 71.5 bits (176), Expect = 1e-16
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 10/70 (14%)

Query: 3   EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVF 62
           + AGG P+ +PL +              FK D  +LE+  + +TK IILN+P+NP G V+
Sbjct: 131 KLAGGKPVPVPLDEEE----------NGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVY 180

Query: 63  TREELEVIAK 72
           ++EEL+ I +
Sbjct: 181 SKEELKAIVE 190

Length = 393

>gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional

 Score = 68.1 bits (167), Expect = 2e-15
 Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 12/67 (17%)

Query: 5   AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
           AGGVP  + L      EP        ++L  A L + FS RTK ++LN P NP GKVF R
Sbjct: 131 AGGVPRLVRL------EP------PHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPR 178

Query: 65  EELEVIA 71
           EEL ++A
Sbjct: 179 EELALLA 185

Length = 387

>gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated

 Score = 66.6 bits (163), Expect = 6e-15
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 10/67 (14%)

Query: 5   AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
           AG   + +PL        GR      F LD   L +  + RT+ +I+N+PHNP G V T 
Sbjct: 129 AGAHRVPVPLV-----PDGRG-----FALDLDALRAAVTPRTRALIVNSPHNPTGTVLTA 178

Query: 65  EELEVIA 71
            EL  IA
Sbjct: 179 AELAAIA 185

Length = 387

>gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional

 Score = 60.6 bits (147), Expect = 8e-13
 Identities = 25/42 (59%), Positives = 35/42 (83%)

Query: 30  DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71
           DF +   EL++ F+S+T+ I++NTPHNP GK+FTREELE+IA
Sbjct: 172 DFAVPEDELKAAFTSKTRAILINTPHNPTGKMFTREELELIA 213

Length = 413

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score = 60.4 bits (147), Expect = 1e-12
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 11/70 (15%)

Query: 3   EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVF 62
             AG   + +PL +              F LD   LE+  + +TKL+ LN P+NP G V 
Sbjct: 101 RLAGAEVVPVPLDE-----------EGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVL 149

Query: 63  TREELEVIAK 72
           + EELE +A+
Sbjct: 150 SEEELEELAE 159

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

>gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated

 Score = 58.0 bits (141), Expect = 8e-12
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 12/69 (17%)

Query: 3   EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVF 62
           E AGG  + + LQ      P       DF++D     +  S RT+LIILNTPHNP G V+
Sbjct: 133 ELAGGRAVRVALQ------PP------DFRVDWQRFAAAISPRTRLIILNTPHNPSGTVW 180

Query: 63  TREELEVIA 71
           +  ++  + 
Sbjct: 181 SAADMRALW 189

Length = 386

>gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated

 Score = 57.4 bits (139), Expect = 1e-11
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 11/68 (16%)

Query: 5   AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
           AGGVP+ +    T+           +FK+ PA++E+  +++TK I+L +P+NP G V  +
Sbjct: 125 AGGVPVPV---ATTLEN--------EFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNK 173

Query: 65  EELEVIAK 72
            ELE IA 
Sbjct: 174 SELEEIAV 181

Length = 378

>gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional

 Score = 57.1 bits (139), Expect = 1e-11
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 12/70 (17%)

Query: 3   EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVF 62
           +  GG  + +P  DT             F+ D   LE+  + +TK +I+N+P+NP G V+
Sbjct: 138 DNHGGKLVVVPT-DTD-----------TFQPDLDALEAAITPKTKAVIINSPNNPTGVVY 185

Query: 63  TREELEVIAK 72
           + E L+ +A 
Sbjct: 186 SEETLKALAA 195

Length = 394

>gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional

 Score = 56.7 bits (137), Expect = 2e-11
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 11/70 (15%)

Query: 3   EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVF 62
           E  GG PI +    T   +         F+++  +LE+  +S+TK IILN+P+NP G VF
Sbjct: 131 EMVGGKPIILE---TYEED--------GFQINVKKLEALITSKTKAIILNSPNNPTGAVF 179

Query: 63  TREELEVIAK 72
           ++E LE IAK
Sbjct: 180 SKETLEEIAK 189

Length = 384

>gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase

 Score = 53.5 bits (129), Expect = 3e-10
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 9   PIYIPLQDTSPAEPGRHKSSADFKLDP-------AELESKFSSRTKLIILNTPHNPLGKV 61
           P+Y P   ++    GR       KLDP        +LE   + + +L++L +PHNP+G+V
Sbjct: 115 PVYPPFL-SAVKSNGRELVLNPLKLDPGRYRFDLEDLEDAITEKARLLLLCSPHNPVGRV 173

Query: 62  FTREELEVIA 71
           +TREEL  +A
Sbjct: 174 WTREELTRLA 183

Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A). Length = 384

>gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional

 Score = 52.8 bits (127), Expect = 5e-10
 Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 11/72 (15%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M  A  G P+ +      P E G       FKL P  LE+  + RT+ +ILN P NP G 
Sbjct: 133 MVLANDGTPVIVA----CPEEQG-------FKLTPEALEAAITPRTRWLILNAPSNPTGA 181

Query: 61  VFTREELEVIAK 72
           V++R EL  +A 
Sbjct: 182 VYSRAELRALAD 193

Length = 402

>gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional

 Score = 51.9 bits (125), Expect = 1e-09
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 3   EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVF 62
           +  G   + +PL        G       + LD   L +  + RT+ + +N+P+NP G   
Sbjct: 126 KILGARVVCVPLD------FGGGG----WTLDLDRLLAAITPRTRALFINSPNNPTGWTA 175

Query: 63  TREELEVI 70
           +R++L  I
Sbjct: 176 SRDDLRAI 183

Length = 382

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score = 51.9 bits (125), Expect = 1e-09
 Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 14/73 (19%)

Query: 3   EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRT---KLIILNTPHNPLG 59
             AGG  +  PL            SS DF LD   LE+     T   K+++  +PHNP G
Sbjct: 108 RLAGGEVVRYPL-----------YSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTG 156

Query: 60  KVFTREELEVIAK 72
            V T EELE +  
Sbjct: 157 TVATLEELEKLLD 169

Length = 357

>gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

 Score = 50.7 bits (122), Expect = 2e-09
 Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 31  FKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIA 71
           +++D   LE  F   R KL IL  PHNP G+V+T+EEL  IA
Sbjct: 143 YEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIA 184

Length = 388

>gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional

 Score = 48.2 bits (115), Expect = 2e-08
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 12/66 (18%)

Query: 6   GGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTRE 65
           G  P+ I L            S  DF+++  E+ +  + RT++II+NTPHNP   VF+  
Sbjct: 135 GATPVAIKL------------SPEDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAA 182

Query: 66  ELEVIA 71
           +L  +A
Sbjct: 183 DLARLA 188

Length = 384

>gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional

 Score = 46.0 bits (110), Expect = 1e-07
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 14/65 (21%)

Query: 8   VPIYIPLQDTSPAEPGRHKSSADFKLDP-AELESKFSSRTKLIILNTPHNPLGKVFTREE 66
           VP+      T+  E G       F L    E+E   + +TK I+++ P NP G V+T+EE
Sbjct: 137 VPV------TTKIEEG-------FHLPSKEEIEKLITPKTKAILISNPGNPTGVVYTKEE 183

Query: 67  LEVIA 71
           LE++A
Sbjct: 184 LEMLA 188

Length = 397

>gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

 Score = 45.4 bits (108), Expect = 3e-07
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 14/70 (20%)

Query: 3   EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVF 62
           + AG   + +PL               +F+LD   + +    +TKL+ L  P+NP G + 
Sbjct: 117 QLAGAEVVKVPL--------------KEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLL 162

Query: 63  TREELEVIAK 72
            REEL  + +
Sbjct: 163 PREELRALLE 172

Length = 356

>gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase

 Score = 44.8 bits (106), Expect = 4e-07
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 30  DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVI 70
            F+ D   L +  + RT+ +++N PHNP G   T  EL+ +
Sbjct: 127 GFRPDLDALRALLTPRTRAVVVNFPHNPTGASVTPRELDEL 167

Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359

>gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase

 Score = 44.2 bits (105), Expect = 5e-07
 Identities = 12/44 (27%), Positives = 25/44 (56%)

Query: 29  ADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
            D +LD  ++      + KL+ L +P+NP G + +R ++E + +
Sbjct: 126 EDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLE 169

Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346

>gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional

 Score = 43.3 bits (102), Expect = 1e-06
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 11/67 (16%)

Query: 5   AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
           A   PI IPL++ +           +F+ DP EL    + RT++I++N P+NP G    +
Sbjct: 137 AEAKPIRIPLREEN-----------EFQPDPDELLELITKRTRMIVINYPNNPTGATLDK 185

Query: 65  EELEVIA 71
           E  + IA
Sbjct: 186 EVAKAIA 192

Length = 391

>gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated

 Score = 43.3 bits (103), Expect = 1e-06
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 28  SADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71
            A +  D  ++ SK + RTK I++  P+NP G V+++E LE I 
Sbjct: 151 EAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIV 194

Length = 404

>gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional

 Score = 42.8 bits (101), Expect = 2e-06
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
            +   G   I +P+               ++KL P  ++      T+LI L  P NPLG 
Sbjct: 123 FASRFGAEVIEVPIYS----------EECNYKLTPELVKENMDENTRLIYLIDPLNPLGS 172

Query: 61  VFTREELEVIA 71
            +T EE++  A
Sbjct: 173 SYTEEEIKEFA 183

Length = 380

>gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase; Validated

 Score = 42.2 bits (100), Expect = 3e-06
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 20  AEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
           A+P   K   DF LD   + +  + +TK+I L TP+NP G +   E++  I +
Sbjct: 133 AKPVYAKREEDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEEDIRKILE 185

Length = 361

>gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated

 Score = 42.4 bits (100), Expect = 3e-06
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 12/67 (17%)

Query: 5   AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
            G  P++I   DT          S  F+L    LE+  + +T+ ++L  P NP G   ++
Sbjct: 133 CGAKPVFI---DTR---------STGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSK 180

Query: 65  EELEVIA 71
           EEL+ IA
Sbjct: 181 EELQDIA 187

Length = 387

>gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic

 Score = 41.7 bits (98), Expect = 5e-06
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 30  DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVI 70
            +++D  +LES    +T  +++N P NP G VF+R+ LE I
Sbjct: 153 SWEIDLKQLESLIDEKTAALVVNNPSNPCGSVFSRQHLEEI 193

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401

>gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 9   PIYIPLQDTSPAEPGRHKSSA-DFKLDPAELESKFSSR---TKLIILNTPHNPLGKVFTR 64
           P Y P+ +   AE     ++  DF L P  LE     +    K +ILN P NP G  ++R
Sbjct: 126 PGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSR 185

Query: 65  EELEVIA 71
           E+++ +A
Sbjct: 186 EQIKALA 192

Length = 391

>gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated

 Score = 39.2 bits (92), Expect = 4e-05
 Identities = 16/47 (34%), Positives = 21/47 (44%)

Query: 26  KSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
           K    +  D  EL       TKLI +N  +NP G +  R  LE I +
Sbjct: 134 KEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVE 180

Length = 373

>gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase

 Score = 38.9 bits (91), Expect = 5e-05
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 30  DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71
           D+++D   LES    +T  I++  P NP G VF+R+ L+ IA
Sbjct: 154 DWEIDLDGLESLADEKTVAIVVINPSNPCGSVFSRDHLQKIA 195

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403

>gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional

 Score = 37.4 bits (87), Expect = 1e-04
 Identities = 16/37 (43%), Positives = 25/37 (67%)

Query: 34  DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVI 70
           D  ++ SK +SRTK I++  P+NP G ++ RE L+ I
Sbjct: 270 DIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQI 306

Length = 517

>gnl|CDD|224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism]

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 28  SADFKLDPAELESKFS------SRTKLIILNTPHNPLGKVFTREELEVIAK 72
            AD KL P ++E+         + T L +L       G V+  +ELE I+ 
Sbjct: 107 GADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISA 157

Length = 342

>gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 9   PIYIPLQDTSPAEPGRHKS--SADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREE 66
           P Y  L       P  +++     ++ D  ++  K + +TK I +  P+NP G ++ ++ 
Sbjct: 128 PPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKT 187

Query: 67  LEVI 70
           L+ I
Sbjct: 188 LKEI 191

Length = 398

>gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 11/67 (16%)

Query: 4   AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFT 63
           AA G P+ +P   + PAE         F+L  A++E+ +  RT+ ++L +P NP G    
Sbjct: 133 AAEGRPVLVP---SGPAE--------RFQLTAADVEAAWGERTRGVLLASPSNPTGTSIA 181

Query: 64  REELEVI 70
            +EL  I
Sbjct: 182 PDELRRI 188

Length = 388

>gnl|CDD|179559 PRK03321, PRK03321, putative aminotransferase; Provisional

 Score = 36.1 bits (84), Expect = 4e-04
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 13/64 (20%)

Query: 5   AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
           AG  P+ +PL             + D   D   + +  + RT+LI +  P+NP G V T 
Sbjct: 118 AGATPVQVPL-------------TPDHTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTP 164

Query: 65  EELE 68
            EL 
Sbjct: 165 AELA 168

Length = 352

>gnl|CDD|236009 PRK07392, PRK07392, threonine-phosphate decarboxylase; Validated

 Score = 35.8 bits (83), Expect = 6e-04
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 9/64 (14%)

Query: 4   AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFT 63
           A G     +PL    P +      +   +  P +L     +    ++LN PHNP GK+++
Sbjct: 116 AFGATVKELPL----PLDQPSPGLTLRLQTLPPQL-----TPNDGLLLNNPHNPTGKLWS 166

Query: 64  REEL 67
           RE +
Sbjct: 167 REAI 170

Length = 360

>gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional

 Score = 35.5 bits (82), Expect = 7e-04
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 28  SADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVI 70
             D++ D  E+      RTK +I+  P NP G  F+R+ +E I
Sbjct: 160 EKDWEADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDI 202

Length = 412

>gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional

 Score = 35.1 bits (81), Expect = 0.001
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 33  LDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71
           LD  +LE  F +  ++ + + P+NP G V++ EE+  IA
Sbjct: 166 LDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAEEIAQIA 204

Length = 405

>gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated

 Score = 34.4 bits (80), Expect = 0.002
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 14/65 (21%)

Query: 4   AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFT 63
           A G  P+ +P              + D+  D   + +  + RT+L+ +  P+NP G    
Sbjct: 127 AVGAKPVEVP--------------AKDYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLP 172

Query: 64  REELE 68
            EE+E
Sbjct: 173 AEEVE 177

Length = 367

>gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase

 Score = 33.9 bits (78), Expect = 0.003
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 11/64 (17%)

Query: 5   AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
           AG  P ++       AE G       F  D   +      R +L+ + +P NP G V + 
Sbjct: 136 AGAEPYFLN----CTAENG-------FLPDFDAVPESVWRRCQLLFVCSPGNPTGAVLSL 184

Query: 65  EELE 68
           + L+
Sbjct: 185 DTLK 188

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.54
KOG0257|consensus	420		99.51
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.45
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.44
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.41
PLN02368	407	alanine transaminase	99.4
PRK07681	399	aspartate aminotransferase; Provisional	99.39
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.38
PRK08068	389	transaminase; Reviewed	99.38
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.37
PRK06290	410	aspartate aminotransferase; Provisional	99.36
PTZ00377	481	alanine aminotransferase; Provisional	99.36
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.36
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.35
PRK05942	394	aspartate aminotransferase; Provisional	99.35
PRK07324	373	transaminase; Validated	99.34
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.33
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.33
PLN02187	462	rooty/superroot1	99.33
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.33
PLN02231	534	alanine transaminase	99.33
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.32
PRK06207	405	aspartate aminotransferase; Provisional	99.31
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.31
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.3
KOG0259|consensus	447		99.3
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.29
PRK07337	388	aminotransferase; Validated	99.29
PRK09275	527	aspartate aminotransferase; Provisional	99.29
PRK06348	384	aspartate aminotransferase; Provisional	99.28
PTZ00433	412	tyrosine aminotransferase; Provisional	99.28
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.28
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.28
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.27
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.27
PLN00175	413	aminotransferase family protein; Provisional	99.27
PRK08960	387	hypothetical protein; Provisional	99.27
PTZ00376	404	aspartate aminotransferase; Provisional	99.26
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.26
PRK06855	433	aminotransferase; Validated	99.26
PRK12414	384	putative aminotransferase; Provisional	99.26
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.25
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.24
PRK08912	387	hypothetical protein; Provisional	99.24
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.24
PRK07682	378	hypothetical protein; Validated	99.24
PRK09105	370	putative aminotransferase; Provisional	99.23
PRK05957	389	aspartate aminotransferase; Provisional	99.23
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.23
PRK09265	404	aminotransferase AlaT; Validated	99.22
PRK06108	382	aspartate aminotransferase; Provisional	99.21
PRK08361	391	aspartate aminotransferase; Provisional	99.21
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.21
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.21
PLN02656	409	tyrosine transaminase	99.21
PRK07550	386	hypothetical protein; Provisional	99.2
PRK06836	394	aspartate aminotransferase; Provisional	99.2
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.19
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.18
PRK05764	393	aspartate aminotransferase; Provisional	99.18
PLN02397	423	aspartate transaminase	99.18
PRK09082	386	methionine aminotransferase; Validated	99.18
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.18
PRK03321	352	putative aminotransferase; Provisional	99.18
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.17
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.17
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.16
PRK07777	387	aminotransferase; Validated	99.16
PRK08636	403	aspartate aminotransferase; Provisional	99.15
PRK05839	374	hypothetical protein; Provisional	99.15
PRK08637	388	hypothetical protein; Provisional	99.15
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.14
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.14
PRK07683	387	aminotransferase A; Validated	99.14
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.13
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.13
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.13
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.13
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.12
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.11
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.11
PRK06107	402	aspartate aminotransferase; Provisional	99.11
PRK08363	398	alanine aminotransferase; Validated	99.11
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.1
PRK06225	380	aspartate aminotransferase; Provisional	99.09
PRK09148	405	aminotransferase; Validated	99.09
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.06
PRK07568	397	aspartate aminotransferase; Provisional	99.05
PLN02672	1082	methionine S-methyltransferase	99.04
PRK07908	349	hypothetical protein; Provisional	99.02
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.01
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.0
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.0
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	98.99
KOG0256|consensus	471		98.95
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	98.95
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	98.94
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	98.93
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	98.92
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	98.92
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	98.91
PRK02948	381	cysteine desulfurase; Provisional	98.9
PRK08175	395	aminotransferase; Validated	98.9
KOG0633|consensus	375		98.9
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	98.88
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	98.86
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	98.86
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	98.86
PRK08354	311	putative aminotransferase; Provisional	98.85
PRK06234	400	methionine gamma-lyase; Provisional	98.83
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	98.83
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	98.82
PRK08064	390	cystathionine beta-lyase; Provisional	98.8
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	98.8
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	98.8
PRK07671	377	cystathionine beta-lyase; Provisional	98.8
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	98.77
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	98.76
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	98.75
PRK14012	404	cysteine desulfurase; Provisional	98.74
PLN02721	353	threonine aldolase	98.74
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	98.72
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	98.72
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	98.71
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	98.71
PRK08776	405	cystathionine gamma-synthase; Provisional	98.7
PRK08861	388	cystathionine gamma-synthase; Provisional	98.7
PRK08249	398	cystathionine gamma-synthase; Provisional	98.69
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	98.69
PRK07049	427	methionine gamma-lyase; Validated	98.68
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	98.68
PRK07503	403	methionine gamma-lyase; Provisional	98.68
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	98.68
PRK06460	376	hypothetical protein; Provisional	98.67
KOG0258|consensus	475		98.66
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	98.65
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	98.65
PLN02651	364	cysteine desulfurase	98.65
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	98.64
PRK00451	447	glycine dehydrogenase subunit 1; Validated	98.62
PRK07811	388	cystathionine gamma-synthase; Provisional	98.61
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	98.61
PRK08247	366	cystathionine gamma-synthase; Reviewed	98.6
PRK08045	386	cystathionine gamma-synthase; Provisional	98.59
PLN02242	418	methionine gamma-lyase	98.59
PRK06767	386	methionine gamma-lyase; Provisional	98.58
PRK07269	364	cystathionine gamma-synthase; Reviewed	98.57
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	98.57
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	98.57
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	98.56
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	98.55
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	98.55
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	98.55
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	98.55
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	98.54
PRK05939	397	hypothetical protein; Provisional	98.54
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	98.5
PLN02409	401	serine--glyoxylate aminotransaminase	98.5
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	98.5
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	98.5
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	98.48
PRK13520	371	L-tyrosine decarboxylase; Provisional	98.48
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	98.48
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	98.47
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	98.46
PRK10534	333	L-threonine aldolase; Provisional	98.45
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	98.44
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	98.43
PLN02509	464	cystathionine beta-lyase	98.42
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	98.41
cd00609	350	AAT_like Aspartate aminotransferase family. This f	98.4
PRK04366	481	glycine dehydrogenase subunit 2; Validated	98.39
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	98.39
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	98.37
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	98.37
PRK09028	394	cystathionine beta-lyase; Provisional	98.37
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	98.32
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	98.32
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	98.32
PRK07050	394	cystathionine beta-lyase; Provisional	98.31
PRK05967	395	cystathionine beta-lyase; Provisional	98.31
PRK08114	395	cystathionine beta-lyase; Provisional	98.27
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	98.26
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	98.24
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	98.24
PRK08574	385	cystathionine gamma-synthase; Provisional	98.22
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	98.18
PRK07505	402	hypothetical protein; Provisional	98.17
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	98.14
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	98.13
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	98.12
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	98.09
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	98.09
KOG0053|consensus	409		98.08
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	98.07
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	98.05
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	98.02
PRK07582	366	cystathionine gamma-lyase; Validated	98.0
PRK13392	410	5-aminolevulinate synthase; Provisional	98.0
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	97.99
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	97.95
KOG1549|consensus	428		97.9
PRK02769	380	histidine decarboxylase; Provisional	97.89
PLN02414	993	glycine dehydrogenase (decarboxylating)	97.87
PRK07179	407	hypothetical protein; Provisional	97.87
TIGR01814	406	kynureninase kynureninase. This model describes ky	97.85
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	97.83
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	97.83
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	97.78
PRK05968	389	hypothetical protein; Provisional	97.77
PLN03032	374	serine decarboxylase; Provisional	97.76
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	97.74
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	97.65
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	97.64
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	97.63
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	97.61
PRK04311	464	selenocysteine synthase; Provisional	97.58
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	97.51
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	97.44
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	97.43
PRK06434	384	cystathionine gamma-lyase; Validated	97.43
KOG0634|consensus	472		97.41
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	97.4
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	97.37
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	97.35
PRK09064	407	5-aminolevulinate synthase; Validated	97.34
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	97.32
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	97.29
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	97.29
KOG1383|consensus	491		97.22
PTZ00125	400	ornithine aminotransferase-like protein; Provision	97.1
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	97.08
PRK13393	406	5-aminolevulinate synthase; Provisional	97.08
PRK03244	398	argD acetylornithine aminotransferase; Provisional	97.06
PRK02627	396	acetylornithine aminotransferase; Provisional	96.93
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	96.92
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	96.91
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	96.79
PRK12566	954	glycine dehydrogenase; Provisional	96.77
PLN02822	481	serine palmitoyltransferase	96.74
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	96.71
PRK01278	389	argD acetylornithine transaminase protein; Provisi	96.7
KOG1368|consensus	384		96.51
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	96.41
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	96.36
PRK05367	954	glycine dehydrogenase; Provisional	96.3
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	96.29
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	96.19
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	96.13
PLN02263	470	serine decarboxylase	96.04
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	95.97
PRK13580	493	serine hydroxymethyltransferase; Provisional	95.81
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	95.76
PLN02724	805	Molybdenum cofactor sulfurase	95.6
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	95.52
PLN02271	586	serine hydroxymethyltransferase	95.32
PLN02880	490	tyrosine decarboxylase	94.87
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	94.8
PLN02483	489	serine palmitoyltransferase	94.58
PRK13237	460	tyrosine phenol-lyase; Provisional	94.5
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	94.44
PLN02624	474	ornithine-delta-aminotransferase	94.44
KOG1411|consensus	427		94.16
PTZ00094	452	serine hydroxymethyltransferase; Provisional	94.14
KOG2862|consensus	385		94.03
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	94.02
KOG1412|consensus	410		93.82
PLN02590	539	probable tyrosine decarboxylase	93.73
PRK04260	375	acetylornithine aminotransferase; Provisional	93.71
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	93.08
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	92.86
PRK02936	377	argD acetylornithine aminotransferase; Provisional	92.06
PRK03080	378	phosphoserine aminotransferase; Provisional	91.92
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	91.79
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	91.75
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	91.6
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	90.24
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	90.1
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	90.09
PRK13034	416	serine hydroxymethyltransferase; Reviewed	89.87
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	86.98
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	86.7
PRK04612	408	argD acetylornithine transaminase protein; Provisi	85.94
PRK15400	714	lysine decarboxylase CadA; Provisional	85.7
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	85.67
PLN03226	475	serine hydroxymethyltransferase; Provisional	84.7
PRK15029	755	arginine decarboxylase; Provisional	84.6
KOG1360|consensus	570		84.51
PRK13578	720	ornithine decarboxylase; Provisional	82.74
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	81.85
COG4100	416	Cystathionine beta-lyase family protein involved i	81.15

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.54  E-value=1e-14  Score=101.61  Aligned_cols=61  Identities=43%  Similarity=0.781  Sum_probs=54.2

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +...|++++.+++..+.          .+|.+|++.|+++++++||+|++|+||||||.+++.+++++|++
T Consensus       130 ~~~~gg~~v~v~l~~~~----------~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i~~  190 (393)
T COG0436         130 VKLAGGKPVPVPLDEEE----------NGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVE  190 (393)
T ss_pred             HHhcCCEEEEEeCCcCc----------cCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHHHH
Confidence            35789999999986531          18999999999999999999999999999999999999999864

>KOG0257|consensus

Probab=99.51  E-value=2.2e-14  Score=100.47  Aligned_cols=66  Identities=61%  Similarity=0.981  Sum_probs=56.8

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +++.|+.+++|++....    |. ....+|.+|.+.++.+++++||+|++|+||||||.++++++|++|++
T Consensus       134 ~~maG~tpv~v~~~~~~----g~-~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~  199 (420)
T KOG0257|consen  134 VVMAGGTPVFVPLKPKE----GN-VSSSDWTLDPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAE  199 (420)
T ss_pred             HhhcCCcceeecccccc----cc-ccCccccCChHHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHH
Confidence            46789999999998421    22 33458999999999999999999999999999999999999999874

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.45  E-value=1.4e-13  Score=95.64  Aligned_cols=61  Identities=41%  Similarity=0.642  Sum_probs=52.4

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      .+..|.+++..|+..++          +.|.+|+++|++++. .++|++++||||||||++++.++|++|++
T Consensus       124 i~~n~R~~i~~pL~~~~----------~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~e  185 (388)
T COG1168         124 IKLNGRKVIENPLVEDD----------GRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAE  185 (388)
T ss_pred             HhhcCcEEEeccccccC----------CcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHH
Confidence            35678999999998643          389999999999985 45799999999999999999999998863

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.44  E-value=1.4e-13  Score=94.62  Aligned_cols=60  Identities=22%  Similarity=0.420  Sum_probs=52.6

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.+|++.++           +|.+|++++++.+.+++|++++||||||||.+++.+++++|++
T Consensus       134 ~~~~g~~~~~vp~~~~~-----------~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~  193 (396)
T PRK09147        134 ALLAGAEPYFLNCDPAN-----------NFAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLPLDDWKKLFA  193 (396)
T ss_pred             HHhcCCEEEEeccCccc-----------cCccCHHHHHHHHhhccEEEEEcCCCCCcCccCCHHHHHHHHH
Confidence            35679999999997654           7899999998888778999999999999999999999998863

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.41  E-value=3.4e-13  Score=96.10  Aligned_cols=59  Identities=34%  Similarity=0.574  Sum_probs=52.7

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.++           +|.+|++++++++.+++|+|+++|||||||.+++.+++++|+
T Consensus       249 ~~~~g~~~v~~~~~~~~-----------~~~~d~~~l~~~~~~~~k~i~i~nP~NPTG~v~~~~~l~~i~  307 (517)
T PRK13355        249 VNLAGGTAVHYRCDEQS-----------EWYPDIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIV  307 (517)
T ss_pred             HHHCCCEEEEeecCccc-----------CCCCCHHHHHHhcCcCceEEEEECCCCCCCcCcCHHHHHHHH
Confidence            35679999999987754           799999999999988999999999999999999998888875

>PLN02368 alanine transaminase

Probab=99.40  E-value=4.2e-13  Score=93.79  Aligned_cols=60  Identities=22%  Similarity=0.427  Sum_probs=52.2

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.++++.++           +|.+|++.+++++++      ++|++++||||||||.+++.+++++|++
T Consensus       172 ~~~~g~~~v~v~~~~~~-----------~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~  237 (407)
T PLN02368        172 ISLLGGTLVPYYLEESE-----------NWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILK  237 (407)
T ss_pred             HHHcCCEEEEEeccccc-----------CCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHH
Confidence            35679999999997654           799999999998863      6899999999999999999999998863

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.39  E-value=6.1e-13  Score=91.68  Aligned_cols=59  Identities=25%  Similarity=0.492  Sum_probs=52.2

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.++           .|.+|++++++++.+++|+|++||||||||.+++.+++++|+
T Consensus       134 ~~~~G~~~~~v~~~~~~-----------~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~~~~~~i~  192 (399)
T PRK07681        134 IQMAGATSYYMPLKKEN-----------DFLPDLELIPEEIADKAKMMILNFPGNPVPAMAHEDFFKEVI  192 (399)
T ss_pred             HHhcCCEEEEEecCCCC-----------CCcCCHHHHHHhccccceEEEEeCCCCCcCcCCCHHHHHHHH
Confidence            35689999999997654           788999999998877899999999999999999999988876

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.38  E-value=8.9e-13  Score=90.36  Aligned_cols=59  Identities=24%  Similarity=0.365  Sum_probs=52.0

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.++           .|.+|++++++.+.+++|+|++||||||||.+++.+++++|+
T Consensus       133 ~~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG~~~s~~~~~~l~  191 (388)
T PRK07366        133 VYLAGGQIYPMPLRAEN-----------DFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFFQEAV  191 (388)
T ss_pred             HHhcCCEEEEEECCCcc-----------CCCCCHHHHHHhhcccceEEEEeCCCCCCCccCCHHHHHHHH
Confidence            45689999999997654           688999999888877899999999999999999999999876

>PRK08068 transaminase; Reviewed

Probab=99.38  E-value=8.8e-13  Score=90.53  Aligned_cols=59  Identities=27%  Similarity=0.367  Sum_probs=52.0

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.+.           +|.+|++++++.+..++++|++||||||||.+++.+++++|+
T Consensus       135 ~~~~g~~~~~i~~~~~~-----------~~~~d~~~l~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~  193 (389)
T PRK08068        135 VALARAQFETMPLIAEN-----------NFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAVATKAFFEETV  193 (389)
T ss_pred             HHhcCCEEEEeeccccc-----------CCCCCHHHHHHhccccceEEEEECCCCCCCCcCCHHHHHHHH
Confidence            35689999999997543           688999999998877899999999999999999999998875

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.37  E-value=8.2e-13  Score=90.77  Aligned_cols=58  Identities=22%  Similarity=0.394  Sum_probs=51.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.++           +|.+|++++++++.+++|+|+++|||||||.+++.+++++|+
T Consensus       134 ~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~~~~~~k~i~l~~p~NPtG~~~s~~~~~~l~  191 (393)
T TIGR03538       134 LLAGAEPYFLNCTAEN-----------GFLPDFDAVPESVWRRCQLLFVCSPGNPTGAVLSLDTLKKLI  191 (393)
T ss_pred             HhcCCeEEEeeccccC-----------CCCCCHHHHHHHHhhcceEEEEeCCCCCcCcccCHHHHHHHH
Confidence            4579999999997653           689999999988877899999999999999999999988876

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.36  E-value=1.2e-12  Score=91.24  Aligned_cols=59  Identities=31%  Similarity=0.497  Sum_probs=52.3

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.++           .|.+|++++++++..++|+|+++|||||||.+++.+++++|+
T Consensus       147 ~~~~g~~v~~v~~~~~~-----------~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~v~s~e~l~~l~  205 (410)
T PRK06290        147 TKYYGGEVYNLPLLEEN-----------NFLPDLDSIPKDIKEKAKLLYLNYPNNPTGAVATKEFYEEVV  205 (410)
T ss_pred             HHHcCCEEEEEecCCCc-----------CCcCCHHHHHHhhcccceEEEEECCCCCCCcCCCHHHHHHHH
Confidence            35679999999998654           788999999998887899999999999999999999988875

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.36  E-value=9e-13  Score=93.18  Aligned_cols=60  Identities=30%  Similarity=0.529  Sum_probs=51.9

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.++++.++           +|.+|+++|++++.+      ++|+|+++|||||||.+++.+++++|++
T Consensus       180 ~~~~g~~~v~v~~~~~~-----------~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~  245 (481)
T PTZ00377        180 ITLLGGKQVPYYLDEEK-----------GWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIK  245 (481)
T ss_pred             HHHcCCEEEEEEecccc-----------CCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHH
Confidence            35689999999998654           799999999998864      7899999999999999999998888763

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.36  E-value=1.6e-12  Score=88.58  Aligned_cols=57  Identities=21%  Similarity=0.471  Sum_probs=50.2

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.++++.             +|.+|++++++++ .++++|++||||||||.+++.+++++|++
T Consensus       116 ~~~~G~~~~~v~~~~-------------~~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~~  172 (351)
T PRK01688        116 AETIGVEIRTVPTLD-------------NWQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLLE  172 (351)
T ss_pred             HHHcCCEEEEeecCC-------------CCCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            456899999999864             6889999999887 58999999999999999999999998863

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.35  E-value=1.4e-12  Score=89.16  Aligned_cols=59  Identities=27%  Similarity=0.488  Sum_probs=51.5

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.++           +|.+|++++++++.+++|+|+++|||||||.+++.+++++|+
T Consensus       132 ~~~~G~~v~~v~~~~~~-----------g~~~d~~~l~~~~~~~~~~v~i~~P~NPtG~~~~~~~~~~i~  190 (383)
T TIGR03540       132 TLFAGGEPYEMPLKEEN-----------GFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPLKFFKELV  190 (383)
T ss_pred             HHhcCCEEEEEecCccc-----------CCccCHHHHHhhccccceEEEEeCCCCCcCccCCHHHHHHHH
Confidence            35679999999997653           688899999998888899999999999999999998888875

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.35  E-value=1.5e-12  Score=89.54  Aligned_cols=58  Identities=26%  Similarity=0.363  Sum_probs=51.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ...|++++.++++.++           +|.+|++++++.+.+++|+|+++|||||||.+++.+++++|+
T Consensus       139 ~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~~~~~~k~i~l~~P~NPtG~~~s~~~~~~i~  196 (394)
T PRK05942        139 LIAGAQIYPIILKPEN-----------DWLIDLSSIPEEVAQQAKILYFNYPSNPTTATAPREFFEEIV  196 (394)
T ss_pred             HHcCCEEEEeecCCcc-----------CCccCHHHHHHhccccceEEEEcCCCCCCCCcCCHHHHHHHH
Confidence            4578999999997643           788999999999888999999999999999999998888875

>PRK07324 transaminase; Validated

Probab=99.34  E-value=2.1e-12  Score=88.61  Aligned_cols=59  Identities=32%  Similarity=0.446  Sum_probs=51.7

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.++           +|.+|++++++.+.+++|+|++++||||||.+++.+++++|+
T Consensus       121 ~~~~g~~v~~v~~~~~~-----------~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~~~~l~~i~  179 (373)
T PRK07324        121 PESLGAEVDYWQLKEEN-----------GWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIV  179 (373)
T ss_pred             HHHcCCEEEEEeccccc-----------CCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCCHHHHHHHH
Confidence            35689999999998654           788999999999888999999999999999999988877765

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.33  E-value=2.9e-12  Score=88.94  Aligned_cols=58  Identities=22%  Similarity=0.249  Sum_probs=51.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.+++..++           +|.+|+++|++++.+++++++++|||||||.+++.+++++|+
T Consensus       139 ~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~~~~~~~~~~~~nP~NPTG~~~s~~~~~~l~  196 (409)
T PLN00143        139 IFHHLEIRHFDLLPEK-----------GWEVDLDAVEAIADENTIAMVIINPGNPCGSVYSYEHLNKIA  196 (409)
T ss_pred             HHcCCEEEEEeccCCC-----------CCcCCHHHHHHhcccCCEEEEEECCCCCCCCccCHHHHHHHH
Confidence            4578999999986443           788999999998888899999999999999999999998886

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.33  E-value=1.9e-12  Score=87.87  Aligned_cols=59  Identities=31%  Similarity=0.466  Sum_probs=51.8

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.++           +|.+|++++++++.+++|++++++||||||.+++.+++++|+
T Consensus       104 ~~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~  162 (350)
T TIGR03537       104 ALFAGGEPTAVKLKKED-----------GFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETI  162 (350)
T ss_pred             HHhcCCEEEEcccCccc-----------CCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCHHHHHHHH
Confidence            45689999999997543           788999999999888899999999999999999988888775

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PLN02187 rooty/superroot1

Probab=99.33  E-value=2.8e-12  Score=90.65  Aligned_cols=60  Identities=20%  Similarity=0.372  Sum_probs=52.7

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.+++.+++           +|.+|+++|++++.+++++++++|||||||.+++.+++++|++
T Consensus       172 ~~~~g~~~~~~~l~~~~-----------~~~~d~~~l~~~~~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~  231 (462)
T PLN02187        172 AAYSGLEVRKFDLLPEK-----------EWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAE  231 (462)
T ss_pred             HHHcCCEEEEEeCcccc-----------CCccCHHHHHHhcCCCcEEEEEeCCCCCCCCccCHHHHHHHHH
Confidence            35679999999986543           7999999999999888999999999999999999999988863

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.33  E-value=3.3e-12  Score=87.41  Aligned_cols=58  Identities=31%  Similarity=0.565  Sum_probs=50.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.+.           +|.+|++++++.+.+++|+|+++|||||||.+++.+++++|+
T Consensus       135 ~~~g~~~~~v~~~~~~-----------g~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~  192 (385)
T PRK09276        135 IFAGGEPYFMPLKEEN-----------GFLPDLDAIPEDVAKKAKLMFINYPNNPTGAVADLEFFEEVV  192 (385)
T ss_pred             HHcCCEEEEEecCCCC-----------CCcCCHHHHHHhccccceEEEEeCCCCCCCCCCCHHHHHHHH
Confidence            5679999999987543           688999999988888899999999999999999998888876

>PLN02231 alanine transaminase

Probab=99.33  E-value=1.9e-12  Score=93.24  Aligned_cols=59  Identities=22%  Similarity=0.447  Sum_probs=51.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.+++++++           +|.+|+++|++++..      ++|+|+++|||||||.+++.+++++|++
T Consensus       234 ~~~g~~~v~~~l~~~~-----------~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~  298 (534)
T PLN02231        234 ALHGGTLVPYYLDEAT-----------GWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVE  298 (534)
T ss_pred             HHcCCEEEEEecCccc-----------CCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHH
Confidence            5678999999998654           799999999998754      6899999999999999999999998863

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.32  E-value=3.3e-12  Score=87.54  Aligned_cols=59  Identities=20%  Similarity=0.366  Sum_probs=50.7

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc----CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS----SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.++++.+            +|.+|++++++++.    .++|+|++||||||||.+++.++++++++
T Consensus       133 ~~~~g~~~~~~~~~~~------------~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~  195 (374)
T PRK02610        133 AQTLGIPVVRVGRDPE------------TFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRS  195 (374)
T ss_pred             HHHcCCEEEEecCCcc------------cCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHh
Confidence            4668999999998642            68899999998875    47999999999999999999999998763

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.31  E-value=3.5e-12  Score=88.40  Aligned_cols=62  Identities=29%  Similarity=0.455  Sum_probs=51.2

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++....        ..+|.+|+++|++++.+++|+|+++|||||||.+++.+++++|+
T Consensus       143 ~~~~g~~v~~v~~~~~~~--------~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~e~l~~l~  204 (405)
T PRK06207        143 VEFFEGEMVPVQLDYLSA--------DKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAEEIAQIA  204 (405)
T ss_pred             HHHcCCEEEEEeccccCc--------ccCCCcCHHHHHHhhhhcCeEEEECCCCCCCCcCCCHHHHHHHH
Confidence            356789999999863210        01688999999999888899999999999999999999988876

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.31  E-value=4.6e-12  Score=87.61  Aligned_cols=57  Identities=33%  Similarity=0.661  Sum_probs=51.2

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.+++.              .|.+|++.+.+.+..++++|++||||||||..++.++++++++
T Consensus       116 a~~~g~~~~~v~~~--------------~~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~  172 (356)
T COG0079         116 AQLAGAEVVKVPLK--------------EFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLE  172 (356)
T ss_pred             HHhcCCeEEEeccc--------------ccccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            45689999999987              4778999999999888999999999999999999999999874

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.30  E-value=5.2e-12  Score=86.78  Aligned_cols=57  Identities=21%  Similarity=0.288  Sum_probs=49.6

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.++++              ++.+|++++++++.++++++++||||||||.+++.+++.+|++
T Consensus       122 ~~~~g~~v~~v~~~--------------~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~~~~~~l~~l~~  178 (366)
T PRK01533        122 AIIEGCEVKEVALN--------------NGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIE  178 (366)
T ss_pred             HHHcCCEEEEeecC--------------CCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCCcCHHHHHHHHH
Confidence            35678999999985              3458999999998888999999999999999999999998863

>KOG0259|consensus

Probab=99.30  E-value=5.4e-12  Score=88.32  Aligned_cols=60  Identities=27%  Similarity=0.418  Sum_probs=55.6

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|.+++++++-++.           +|.+|++.++.+++++|.++++.||+||+|.+|+.+.|++|++
T Consensus       167 a~~~~lEVR~ydlLPe~-----------~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae  226 (447)
T KOG0259|consen  167 AIYSGLEVRYYDLLPEK-----------DWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAE  226 (447)
T ss_pred             hhhcCceeEeecccCcc-----------cceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHH
Confidence            45678999999998876           9999999999999999999999999999999999999999874

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.29  E-value=4.6e-12  Score=85.94  Aligned_cols=58  Identities=31%  Similarity=0.542  Sum_probs=51.1

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.+++++             +|.+|++++++++. .++|+|+++|||||||.+++.+++.++++
T Consensus       122 ~~~~g~~~~~i~~~~-------------~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~  180 (356)
T PRK04870        122 AKLAGLEFVGVPLTA-------------DFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIE  180 (356)
T ss_pred             HHHcCCEEEEecCCC-------------CCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHHHHH
Confidence            356899999999874             67899999999985 58999999999999999999999999863

>PRK07337 aminotransferase; Validated

Probab=99.29  E-value=5.8e-12  Score=86.38  Aligned_cols=58  Identities=33%  Similarity=0.622  Sum_probs=51.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.++           +|.+|++++++.+.+++++|++++||||||.+++.+++++|+
T Consensus       132 ~~~g~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~  189 (388)
T PRK07337        132 AAAEGRPVLVPSGPAE-----------RFQLTAADVEAAWGERTRGVLLASPSNPTGTSIAPDELRRIV  189 (388)
T ss_pred             HHcCCEEEEeecCCcc-----------CCcCCHHHHHhhcCccceEEEEECCCCCCCcCcCHHHHHHHH
Confidence            4578999999987643           788999999999988999999999999999999999988876

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.29  E-value=7.2e-12  Score=90.42  Aligned_cols=55  Identities=25%  Similarity=0.335  Sum_probs=47.0

Q ss_pred             CCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            6 GGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         6 g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +++++.++++.++           +|++|.+++++++++++|+|+++|||||||.+++.+++++|+
T Consensus       213 ~~~~v~v~~~~~~-----------~f~~d~~~l~~~~~~~tkai~l~nP~NPTG~v~s~e~l~~I~  267 (527)
T PRK09275        213 DLEVVHINADEEN-----------EWQYPDSELEKLRDPSIKALFLVNPSNPPSVAMSDESLEKIA  267 (527)
T ss_pred             CeEEEEeecCccc-----------CCCCCHHHHHhhcCCCCCEEEEeCCcCCcCCCCCHHHHHHHH
Confidence            4556666655443           799999999999989999999999999999999999998886

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.28  E-value=7e-12  Score=86.06  Aligned_cols=58  Identities=45%  Similarity=0.756  Sum_probs=50.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.+++..++           +|.+|++++++++.+++|+|++++||||||.+++.+++++|+
T Consensus       131 ~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~  188 (384)
T PRK06348        131 EMVGGKPIILETYEED-----------GFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKETLEEIA  188 (384)
T ss_pred             HHcCCEEEEecCCcCc-----------CCcCCHHHHHHhhCcCccEEEEeCCCCCCCcCCCHHHHHHHH
Confidence            4568889988875433           788999999999888899999999999999999999988876

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.28  E-value=7.5e-12  Score=86.76  Aligned_cols=59  Identities=29%  Similarity=0.441  Sum_probs=51.8

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.+.           +|.+|++++++++.+++++|+++|||||||.+++.+++++|+
T Consensus       145 ~~~~g~~~~~i~~~~~~-----------~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~l~  203 (412)
T PTZ00433        145 CKAYGIEMRFYNCRPEK-----------DWEADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDII  203 (412)
T ss_pred             HHHcCCEEEEEecCccc-----------cCcCCHHHHHHHhccCceEEEEeCCCCCCCcccCHHHHHHHH
Confidence            35679999999987643           788999999998888899999999999999999999998875

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.28  E-value=8e-12  Score=88.49  Aligned_cols=57  Identities=26%  Similarity=0.510  Sum_probs=49.4

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ..|++++.++++.++           +|.++++++++++..      ++|+|++||||||||.+++.+++++|+
T Consensus       155 ~~g~~~v~v~~~~~~-----------~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll  217 (468)
T PLN02450        155 RTGVEIVPIHCSSSN-----------GFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLV  217 (468)
T ss_pred             cCCcEEEEEecCCcc-----------CCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHH
Confidence            478999999987543           788999999887743      789999999999999999999999886

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.28  E-value=9.6e-12  Score=87.11  Aligned_cols=58  Identities=24%  Similarity=0.323  Sum_probs=51.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ...|++++.+++.++.           +|.+|++++++++++++++++++|||||||.+++.+++++|+
T Consensus       159 ~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG~v~~~~~l~~i~  216 (430)
T PLN00145        159 VFSGLEVRHFDLLPER-----------GWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIA  216 (430)
T ss_pred             HHcCCEEEEeeCCccc-----------CCcCCHHHHHHHhCcCceEEEEeCCCCCCCCCCCHHHHHHHH
Confidence            4568899999986654           799999999999988999999999999999999999888875

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.27  E-value=8.5e-12  Score=88.06  Aligned_cols=57  Identities=28%  Similarity=0.528  Sum_probs=49.4

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ..|++++.|+++.++           +|.++++++++++..      ++|+|+++|||||||.+++.+++++|+
T Consensus       164 ~~g~~vv~v~~~~~~-----------~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~  226 (447)
T PLN02607        164 RTGVKIVPIHCDSSN-----------NFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDIL  226 (447)
T ss_pred             cCCcEEEEEeCCCCC-----------CCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHH
Confidence            468899999987654           788999999988753      789999999999999999999999876

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.27  E-value=9.9e-12  Score=84.99  Aligned_cols=57  Identities=18%  Similarity=0.382  Sum_probs=50.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             +|.+|++++++++++++|+++++|||||||.+++.+++.+|++
T Consensus       130 ~~~g~~~~~v~~~~-------------~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~  186 (371)
T PRK05166        130 TMMGARVERVTVTP-------------DLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTADQLARVLD  186 (371)
T ss_pred             HHcCCeEEEeecCC-------------CCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            56799999999875             5678999999998888999999999999999999999988863

>PLN00175 aminotransferase family protein; Provisional

Probab=99.27  E-value=7.8e-12  Score=87.04  Aligned_cols=58  Identities=48%  Similarity=0.767  Sum_probs=51.4

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.+            +|.+|++.|++.+.+++|+|+++|||||||.+++.+++++|+
T Consensus       156 ~~~~g~~~~~v~~~~~------------~~~~~~~~l~~~~~~~~k~i~i~~p~NPtG~~~s~~~l~~l~  213 (413)
T PLN00175        156 LSMAGAKIKTVTLRPP------------DFAVPEDELKAAFTSKTRAILINTPHNPTGKMFTREELELIA  213 (413)
T ss_pred             HHHcCCEEEEEECCcc------------cCCCCHHHHHHhcCcCceEEEecCCCCCCCcCCCHHHHHHHH
Confidence            3567999999999753            578999999999988899999999999999999999988876

>PRK08960 hypothetical protein; Provisional

Probab=99.27  E-value=9.8e-12  Score=85.31  Aligned_cols=58  Identities=26%  Similarity=0.544  Sum_probs=51.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.++           +|.+|++.+++++.++++++++++||||||.+++.+++++|+
T Consensus       134 ~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~  191 (387)
T PRK08960        134 RLVEGAAQLVPVGPDS-----------RYQLTPALVERHWNADTVGALVASPANPTGTLLSRDELAALS  191 (387)
T ss_pred             HhcCCeEEEEecCccc-----------CCCCCHHHHHHHhCccceEEEEECCCCCCCcCcCHHHHHHHH
Confidence            4578899999987654           788999999999988899999999999999999999998875

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.26  E-value=7.1e-12  Score=86.71  Aligned_cols=60  Identities=22%  Similarity=0.177  Sum_probs=49.8

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc---CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS---SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.+++..++           +|.+|++.+++++.   +++++++++|||||||.+++.+++++|++
T Consensus       141 ~~~~G~~~~~v~l~~~~-----------~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~  203 (404)
T PTZ00376        141 FKSAGLNVKEYRYYDPK-----------TKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIAD  203 (404)
T ss_pred             HHHcCCceeeccccCcc-----------cCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence            46789999999985432           68899999998874   34678888999999999999999998863

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.26  E-value=1.4e-11  Score=84.87  Aligned_cols=57  Identities=28%  Similarity=0.535  Sum_probs=50.7

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh-cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF-SSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             +|.+|++++++++ .+++|+|++||||||||.+++.+++.+|++
T Consensus       145 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~  202 (380)
T PLN03026        145 AVNGAEVIKVPRTP-------------DFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILE  202 (380)
T ss_pred             HHcCCEEEEeecCC-------------CCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHHHHh
Confidence            46799999999853             6789999999988 678999999999999999999999999874

>PRK06855 aminotransferase; Validated

Probab=99.26  E-value=1.5e-11  Score=86.10  Aligned_cols=57  Identities=32%  Similarity=0.464  Sum_probs=49.2

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc--CCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS--SRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ..|++++.++++.++           +|.+|+++|++++.  +++++++++|||||||.+++.+++++|+
T Consensus       139 ~~g~~~v~v~~~~~~-----------~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~  197 (433)
T PRK06855        139 HAGYPPVTYRLDPEN-----------NWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYPKEILREIV  197 (433)
T ss_pred             hcCCeEEEEeccccc-----------CCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCCCHHHHHHHH
Confidence            347888999987643           78899999999885  4679999999999999999999999886

>PRK12414 putative aminotransferase; Provisional

Probab=99.26  E-value=9.9e-12  Score=85.41  Aligned_cols=57  Identities=37%  Similarity=0.684  Sum_probs=50.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.+            +|.+|++.+++++.+++|+|+++|||||||.+++.+++++|+
T Consensus       132 ~~~g~~~~~v~~~~~------------~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s~~~~~~i~  188 (384)
T PRK12414        132 RLQGATPVAIKLSPE------------DFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLA  188 (384)
T ss_pred             HHcCCEEEEEecCcc------------ccccCHHHHHhhcCcccEEEEEcCCCCCCCcCCCHHHHHHHH
Confidence            457899999998753            688999999999988899999999999999999999988876

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.25  E-value=1.7e-11  Score=88.46  Aligned_cols=61  Identities=18%  Similarity=0.243  Sum_probs=49.1

Q ss_pred             CCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         5 ~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      .|++++.++++..+.      ++..+|.+|.++++++.++++|+|+++|||||||.+++.+++++|+
T Consensus       206 ~g~~vv~i~~~~~~~------~g~~~~~~d~~~l~~~~~~~~kai~l~nP~NPTG~vls~e~l~~I~  266 (521)
T TIGR03801       206 YDFEVVRIKADEMTE------DGTHTWQYPDKELEKLRDPSIKALFVVNPSNPPSVAMSDESIEKIV  266 (521)
T ss_pred             CCcEEEEeecccccc------cccccCCCCHHHHHHhcCCCCcEEEEeCCCCCCCCCCCHHHHHHHH
Confidence            477888888765320      0011399999999998888999999999999999999999998875

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.24  E-value=1.8e-11  Score=83.23  Aligned_cols=57  Identities=32%  Similarity=0.563  Sum_probs=50.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             +|.+|++++++++++ ++|+|+++|||||||.+++.+++.++++
T Consensus       118 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~  175 (351)
T PRK14807        118 KIAGAVEIPVKLKE-------------DYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIE  175 (351)
T ss_pred             HHcCCeEEEeecCC-------------CCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            56799999999864             677899999999864 8999999999999999999999998863

>PRK08912 hypothetical protein; Provisional

Probab=99.24  E-value=1.4e-11  Score=84.41  Aligned_cols=58  Identities=48%  Similarity=0.792  Sum_probs=50.6

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.+            +|.+|++++++.+.+++|+++++|||||||.+++.+++++|+
T Consensus       128 ~~~~g~~~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~i~  185 (387)
T PRK08912        128 IRRAGGVPRLVRLEPP------------HWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPREELALLA  185 (387)
T ss_pred             HHHcCCEEEEEecCcc------------cCcCCHHHHHHHhCccceEEEEeCCCCCcCcccCHHHHHHHH
Confidence            3567999999998642            678999999999988899999999999999999999988775

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.24  E-value=1.8e-11  Score=83.24  Aligned_cols=56  Identities=27%  Similarity=0.484  Sum_probs=47.8

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.+|++.             +|.+|++.+++ + +++|+|++||||||||.+++.+++.+|++
T Consensus       119 ~~~~g~~v~~v~~~~-------------~~~~~~~~l~~-~-~~~~li~i~nP~NPTG~~~~~~~l~~l~~  174 (354)
T PRK04635        119 AETFNVGVKALPLTA-------------DYQLPLDYIEQ-L-DGAKLVFICNPNNPTGTVIDRADIEQLIE  174 (354)
T ss_pred             HHHcCCEEEEEecCC-------------CCCCCHHHHHh-c-cCCCEEEEeCCCCCCCccCCHHHHHHHHH
Confidence            356899999999864             57788888873 3 58999999999999999999999999873

>PRK07682 hypothetical protein; Validated

Probab=99.24  E-value=1.6e-11  Score=83.87  Aligned_cols=58  Identities=41%  Similarity=0.744  Sum_probs=50.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.++           +|.+|++++++++.++++++++++||||||.+++.+++++|+
T Consensus       123 ~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~s~~~~~~l~  180 (378)
T PRK07682        123 TLAGGVPVPVATTLEN-----------EFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEEIA  180 (378)
T ss_pred             HHcCCEEEEeecCCcc-----------CCCCCHHHHHhhcCcccEEEEEECCCCCcCcCcCHHHHHHHH
Confidence            4578899999886543           688999999999988899999999999999999999888875

>PRK09105 putative aminotransferase; Provisional

Probab=99.23  E-value=1.5e-11  Score=84.51  Aligned_cols=56  Identities=27%  Similarity=0.430  Sum_probs=48.6

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.             +|.+|++++++. .++++++++||||||||.+++.+++++++
T Consensus       136 ~~~~g~~~~~v~~~~-------------~~~~d~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~~~l~~l~  191 (370)
T PRK09105        136 ADAQGAPVAKVPLRA-------------DGAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTPRADIEWLL  191 (370)
T ss_pred             HHHcCCeEEEecCCC-------------CCCCCHHHHHhc-CCCCCEEEEeCCCCCCCcCcCHHHHHHHH
Confidence            356799999999864             677899999877 46789999999999999999999999886

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.23  E-value=2.1e-11  Score=83.96  Aligned_cols=56  Identities=30%  Similarity=0.656  Sum_probs=49.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.             +|.+|++++++++++++|+|+++|||||||.+++.+++++|+
T Consensus       131 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~i~~~~klv~~~~p~NPtG~~~~~~~~~~i~  186 (389)
T PRK05957        131 TMAGCQPILVPTDD-------------NYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPEALLRAVN  186 (389)
T ss_pred             HhcCCEEEEeecCC-------------CCCcCHHHHHHhcCcCceEEEEeCCCCCCCcCcCHHHHHHHH
Confidence            56799999998863             678999999999988899999999999999999988877765

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.23  E-value=1.7e-11  Score=84.45  Aligned_cols=59  Identities=34%  Similarity=0.512  Sum_probs=51.3

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.++           +|.+|++.+++.+..++++++++|||||||.+++.+++++|+
T Consensus       136 ~~~~g~~v~~~~~~~~~-----------~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~  194 (401)
T TIGR01264       136 AESMGIEVKLYNLLPDK-----------SWEIDLKQLESLIDEKTAALIVNNPSNPCGSVFSRQHLEEIL  194 (401)
T ss_pred             HHHcCCEEEEeecCCcc-----------CCCCCHHHHHHHhccCceEEEEcCCCCCCCCCCCHHHHHHHH
Confidence            35678999999986543           688999999998887899999999999999999999888876

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK09265 aminotransferase AlaT; Validated

Probab=99.22  E-value=2.1e-11  Score=84.14  Aligned_cols=58  Identities=33%  Similarity=0.574  Sum_probs=49.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.++           +|.+|++++++++.+++++|+++|||||||.+++.+++++|+
T Consensus       137 ~~~g~~~v~~~~~~~~-----------~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~~~~~~~~i~  194 (404)
T PRK09265        137 SLSGGKPVHYLCDEEA-----------GWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIV  194 (404)
T ss_pred             HHcCCEEEEEeccccc-----------CCCCCHHHHHHhccccceEEEEECCCCCCCcCCCHHHHHHHH
Confidence            4568888888876543           688999999999988899999999999999999977777765

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.21  E-value=3.3e-11  Score=81.99  Aligned_cols=59  Identities=27%  Similarity=0.511  Sum_probs=51.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.++          .+|.+|++++++.+.+++++|++++||||||.+++.+++++|+
T Consensus       126 ~~~g~~~~~v~~~~~~----------~~~~~d~~~l~~~~~~~~~~i~l~~p~NPtG~~~~~~~~~~l~  184 (382)
T PRK06108        126 KILGARVVCVPLDFGG----------GGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLRAIL  184 (382)
T ss_pred             HHCCCEEEEeeCCCCC----------CCccCCHHHHHHhcCccceEEEEECCCCCCCcccCHHHHHHHH
Confidence            5679999999997532          1688999999999888899999999999999999999888876

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.21  E-value=3.1e-11  Score=82.91  Aligned_cols=58  Identities=38%  Similarity=0.690  Sum_probs=50.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.++           +|.+|++++++.+.+++++++++|||||||.+++.+++.+|+
T Consensus       135 ~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~i~~~~~~v~i~~p~NPtG~~~~~~~~~~l~  192 (391)
T PRK08361        135 KIAEAKPIRIPLREEN-----------EFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVAKAIA  192 (391)
T ss_pred             HHcCCEEEEEecCCcc-----------CCCCCHHHHHHhcccccEEEEEeCCCCCCCcCcCHHHHHHHH
Confidence            4578999999997654           788999999999988899999999999999999977777664

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.21  E-value=2.5e-11  Score=82.66  Aligned_cols=58  Identities=22%  Similarity=0.346  Sum_probs=46.8

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.++           +|.+| +++.+.+.+++|+|+++|||||||.+++.+++++|+
T Consensus       111 ~~~~g~~~~~v~~~~~~-----------~~~~~-~~~~~~~~~~~k~v~l~~p~NPTG~~~~~~~~~~i~  168 (356)
T PRK08056        111 LQQVGCEIRRYSLREAD-----------GWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERQLLQAIA  168 (356)
T ss_pred             HHHcCCeEEEEeccccc-----------CCCcc-HHHHHhccCCCCEEEEeCCcCCCCCCCCHHHHHHHH
Confidence            35679999999987643           67777 445566667899999999999999999988877765

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.21  E-value=3.4e-11  Score=86.02  Aligned_cols=58  Identities=26%  Similarity=0.511  Sum_probs=48.6

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh------cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF------SSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~------~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..|++++.++++.++           +|.++++++++++      ..++|+|++||||||||.+++.+++++|++
T Consensus       163 ~~G~~vv~v~~~~~~-----------~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~  226 (496)
T PLN02376        163 RTGVEIIPVPCSSSD-----------NFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVR  226 (496)
T ss_pred             hCCCEEEEEeCCCCc-----------cCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHH
Confidence            479999999997643           7889999987653      247899999999999999999999998863

>PLN02656 tyrosine transaminase

Probab=99.21  E-value=3.2e-11  Score=83.64  Aligned_cols=58  Identities=22%  Similarity=0.339  Sum_probs=51.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.+++..+.           +|.+|++++++++.+++++++++|||||||.+++.+++++|+
T Consensus       138 ~~~g~~~~~i~~~~~~-----------~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~s~~~~~~i~  195 (409)
T PLN02656        138 AFRHLEVRYVDLLPEK-----------GWEVDLDAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIA  195 (409)
T ss_pred             HHcCCEEEEEeCCCcC-----------CCCCCHHHHHHHhccCceEEEEECCCCCCCCCCCHHHHHHHH
Confidence            4579999999986543           688999999999988899999999999999999999988876

>PRK07550 hypothetical protein; Provisional

Probab=99.20  E-value=3.2e-11  Score=82.68  Aligned_cols=59  Identities=34%  Similarity=0.551  Sum_probs=51.2

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.+.           +|.+|+++++++++.++++|++++||||||.+++.+++++|+
T Consensus       131 ~~~~g~~~~~v~~~~~~-----------~~~~~~~~l~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~i~  189 (386)
T PRK07550        131 LDMLGIRPVYLPCDEGP-----------GLLPDPAAAEALITPRTRAIALVTPNNPTGVVYPPELLHELY  189 (386)
T ss_pred             HHhcCCEEEEEecCCCc-----------CCCCCHHHHHHHhcccCcEEEEeCCCCCCCcccCHHHHHHHH
Confidence            35679999999997543           688899999999988899999999999999999988887775

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.20  E-value=3e-11  Score=83.26  Aligned_cols=58  Identities=33%  Similarity=0.645  Sum_probs=51.5

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.+            +|.+|++++++++.+++++|++++||||||.+++.+++.+|+
T Consensus       137 ~~~~g~~v~~v~~~~~------------~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~  194 (394)
T PRK06836        137 VDNHGGKLVVVPTDTD------------TFQPDLDALEAAITPKTKAVIINSPNNPTGVVYSEETLKALA  194 (394)
T ss_pred             HHHcCCEEEEEecCCc------------cCcCCHHHHHhhcCcCceEEEEeCCCCCCCcCCCHHHHHHHH
Confidence            3567999999998753            578999999999988999999999999999999999998886

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.19  E-value=3e-11  Score=83.24  Aligned_cols=60  Identities=27%  Similarity=0.297  Sum_probs=48.5

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc---CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS---SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.+++...+           +|.+|++.+++.+.   +++++++++|||||||.+++.+++++|++
T Consensus       137 ~~~~g~~~v~v~~~~~~-----------~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~  199 (396)
T PRK09257        137 FEAAGLEVKTYPYYDAA-----------TKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAE  199 (396)
T ss_pred             HHHcCCcEEEEeccccc-----------cCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence            45689999999984322           67899999988864   34566777999999999999999998863

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.18  E-value=3.8e-11  Score=81.85  Aligned_cols=58  Identities=22%  Similarity=0.423  Sum_probs=48.2

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.++           .|.+| +++.+.+..++++++++|||||||.+++.+++++|+
T Consensus       110 ~~~~g~~~~~~~~~~~~-----------~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~l~  167 (354)
T PRK06358        110 LKAFDAEIEYAELTEET-----------NFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKKIL  167 (354)
T ss_pred             HHHcCCeeEEEeCcccc-----------CCCcc-HHHHHhhccCCCEEEEeCCCCCCCCccCHHHHHHHH
Confidence            35678999999987543           68888 666666666799999999999999999999998886

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.18  E-value=4.8e-11  Score=81.67  Aligned_cols=59  Identities=46%  Similarity=0.839  Sum_probs=51.3

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++.+|++++.++++.++           .|.+|++++++++.++++++++++|+||||.+++.+++++|+
T Consensus       132 ~~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~~~~l~  190 (393)
T PRK05764        132 VKLAGGVPVFVPTGEEN-----------GFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSPEELEAIA  190 (393)
T ss_pred             HHHcCCEEEEEecCccc-----------CCcCCHHHHHHhhCccceEEEEECCCCCCCcccCHHHHHHHH
Confidence            35679999999987543           788999999999988899999999999999999988887775

>PLN02397 aspartate transaminase

Probab=99.18  E-value=4.1e-11  Score=83.76  Aligned_cols=60  Identities=23%  Similarity=0.175  Sum_probs=49.2

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc---CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS---SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.+++...+           +|.+|++.+++.+.   ++++++++++||||||.+++.+++++|++
T Consensus       159 ~~~~g~~~~~v~l~~~~-----------~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~  221 (423)
T PLN02397        159 FRDAGVPVRTYRYYDPK-----------TRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISD  221 (423)
T ss_pred             HHHcCCeEEEeecccCc-----------CCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence            45689999999984332           57899998877664   56788999999999999999999998863

>PRK09082 methionine aminotransferase; Validated

Probab=99.18  E-value=4.3e-11  Score=82.24  Aligned_cols=58  Identities=41%  Similarity=0.705  Sum_probs=51.0

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.+            +|.+|++++++++.+++++|++++||||||.+++.+++++|+
T Consensus       132 ~~~~g~~~~~~~~~~~------------~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~  189 (386)
T PRK09082        132 IELAGGRAVRVALQPP------------DFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALW  189 (386)
T ss_pred             HHHcCCEEEEEecCcc------------cccCCHHHHHHhcCccceEEEEeCCCCCCCcCCCHHHHHHHH
Confidence            3567899999998753            688999999999988899999999999999999999988875

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.18  E-value=6.4e-11  Score=80.48  Aligned_cols=58  Identities=22%  Similarity=0.453  Sum_probs=48.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.++           +|.++.+++.+.. +++|+|++||||||||.+++.+++.++++
T Consensus       124 ~~~g~~~~~~~l~~~~-----------~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG~~~s~~~~~~l~~  181 (357)
T PRK14809        124 RYHHGEVREYPVSKAD-----------DFEQTADTVLDAY-DGERIVYLTSPHNPTGSEIPLDEVEALAE  181 (357)
T ss_pred             HHcCCeEEEEecccCc-----------CCCcCHHHHHHhh-cCCcEEEEeCCCCCCCcCCCHHHHHHHHH
Confidence            4568899999986543           6888888887765 36899999999999999999999998864

>PRK03321 putative aminotransferase; Provisional

Probab=99.18  E-value=4.7e-11  Score=80.77  Aligned_cols=57  Identities=33%  Similarity=0.595  Sum_probs=50.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.+++++             ++.+|++.+++++++++++++++|||||||.+++.+++.++++
T Consensus       116 ~~~g~~~~~v~~~~-------------~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~  172 (352)
T PRK03321        116 QVAGATPVQVPLTP-------------DHTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTPAELARFLD  172 (352)
T ss_pred             HHcCCEEEEccCCC-------------CCCCCHHHHHHhhccCCCEEEEeCCCCCcCCCcCHHHHHHHHH
Confidence            45789999999874             4567899999999888999999999999999999999999874

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.17  E-value=3.9e-11  Score=83.52  Aligned_cols=56  Identities=20%  Similarity=0.348  Sum_probs=46.6

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEe-CCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILN-TPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~-~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.+              .+|+++++++++.++|+++++ |||||||.+++.+++++|+
T Consensus       182 ~~~~g~~~~~v~~~~~--------------g~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~  238 (431)
T PRK15481        182 LRYAGFSASPVSVDAE--------------GMQPEKLERALAQGARAVILTPRAHNPTGCSLSARRAAALR  238 (431)
T ss_pred             HHHcCCeEEeeccCCC--------------CCCHHHHHHHHhcCCCEEEECCCCCCCCCccCCHHHHHHHH
Confidence            4568999999998642              268899999887789998887 9999999999999666654

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.17  E-value=7.4e-11  Score=80.01  Aligned_cols=56  Identities=25%  Similarity=0.348  Sum_probs=48.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++              ++.+|++++++.+.+++++++++|||||||.+++.+++.++++
T Consensus       123 ~~~g~~~~~~~~~--------------~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~  178 (359)
T PRK03158        123 IIEGAEVREVPLK--------------DGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFLE  178 (359)
T ss_pred             HHcCCeEEEEecC--------------CCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            4568899999986              3447899999988888999999999999999999999988863

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.16  E-value=8.3e-11  Score=79.86  Aligned_cols=56  Identities=29%  Similarity=0.579  Sum_probs=49.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++              +|.+|++++++.+++++|+|+++|||||||.+++.+++.++++
T Consensus       126 ~~~g~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~  181 (367)
T PRK02731        126 QAVGAKPVEVPAK--------------DYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVERFLA  181 (367)
T ss_pred             HHcCCeEEEeccc--------------CCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcCCCHHHHHHHHH
Confidence            4578999988873              5678999999999888999999999999999999999999873

>PRK07777 aminotransferase; Validated

Probab=99.16  E-value=6.6e-11  Score=81.14  Aligned_cols=59  Identities=39%  Similarity=0.636  Sum_probs=50.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.+++++++          .+|.+|++++++.+.+++++|+++|||||||.+++.+++++|+
T Consensus       127 ~~~g~~~~~~~~~~~~----------~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~  185 (387)
T PRK07777        127 AMAGAHRVPVPLVPDG----------RGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIA  185 (387)
T ss_pred             HHCCCEEEEeecCCcc----------CCCcCCHHHHHHhcCcccEEEEEcCCCCCCCccCCHHHHHHHH
Confidence            4578899999987642          1688999999999888899999999999999999988887775

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.15  E-value=6.2e-11  Score=81.92  Aligned_cols=60  Identities=30%  Similarity=0.485  Sum_probs=47.8

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHH----HHhhhc---CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAE----LESKFS---SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~----l~~~~~---~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.++++.++           +|.+|++.    +++++.   .+++++++||||||||.+++.+++++|++
T Consensus       136 ~~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~  202 (403)
T PRK08636        136 FILAGGNVHKMPLEYNE-----------DFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVA  202 (403)
T ss_pred             HHhcCCEEEEEeccccc-----------cCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHH
Confidence            35679999999986433           67888764    455553   47899999999999999999999998863

>PRK05839 hypothetical protein; Provisional

Probab=99.15  E-value=5.7e-11  Score=81.51  Aligned_cols=57  Identities=33%  Similarity=0.525  Sum_probs=46.1

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.++++.++           +|.+|+++.+  + +++|+|++||||||||.+++.+++++|++
T Consensus       126 ~~~~g~~v~~v~~~~~~-----------~~~~d~~~~~--~-~~~k~v~i~nP~NPTG~~~s~~~l~~i~~  182 (374)
T PRK05839        126 AIASRAKVLLMPLTKEN-----------DFTPSLNEKE--L-QEVDLVILNSPNNPTGRTLSLEELIEWVK  182 (374)
T ss_pred             HHhcCCEEEEeeccccc-----------CCcCCcchhh--h-ccccEEEEeCCCCCcCcccCHHHHHHHHH
Confidence            35679999999997654           6877765442  2 46999999999999999999999998863

>PRK08637 hypothetical protein; Provisional

Probab=99.15  E-value=1e-10  Score=80.50  Aligned_cols=56  Identities=29%  Similarity=0.415  Sum_probs=45.7

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc----CCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS----SRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ..|++++.+++..+            ++.+|+++++++++    +..++++++|||||||.+++.+++++|+
T Consensus       113 ~~g~~vv~v~~~~~------------~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~  172 (388)
T PRK08637        113 RRGAEIVTYPIFDE------------DGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIV  172 (388)
T ss_pred             hcCCEEEEecccCC------------CCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHH
Confidence            46899999998432            44579999988875    4456688999999999999999999886

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.14  E-value=1e-10  Score=79.38  Aligned_cols=56  Identities=25%  Similarity=0.485  Sum_probs=48.2

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.             +|.+|++.+++.. +++|+++++|||||||.+++.+++.+++
T Consensus       111 ~~~~g~~~~~v~~~~-------------~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~~~~l~~i~  166 (337)
T PRK03967        111 AKLNGIPVIDVPLKE-------------DFTIDGERIAEKA-KNASAVFICSPNNPTGNLQPEEEILKVL  166 (337)
T ss_pred             HHHcCCeEEEeecCC-------------CCCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence            356789999999864             6778999998765 5789999999999999999999999876

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.14  E-value=7.5e-11  Score=80.42  Aligned_cols=57  Identities=23%  Similarity=0.398  Sum_probs=47.8

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++.+.             +|.+|++++++++. .++|+|+++|||||||.+++.+++++|++
T Consensus       130 ~~~g~~~~~~~~~~-------------~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~  187 (368)
T PRK03317        130 RGTHTEWVEGPRAA-------------DFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDVEAILD  187 (368)
T ss_pred             HhcCCeeEEcccCC-------------CCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            45677777777643             68899999999885 47899999999999999999999999873

>PRK07683 aminotransferase A; Validated

Probab=99.14  E-value=8.7e-11  Score=80.83  Aligned_cols=57  Identities=33%  Similarity=0.650  Sum_probs=50.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|+++++++++.+            +|.+|.+.+++.+.++++++++++||||||.+++.+++++|+
T Consensus       131 ~~~g~~~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~i~i~~p~NPtG~~~s~~~~~~l~  187 (387)
T PRK07683        131 RLCGAKPVFIDTRST------------GFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEELQDIA  187 (387)
T ss_pred             HHcCCEEEEeecCcc------------cCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHH
Confidence            467999999998753            688899999999888899999999999999999998888775

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.13  E-value=9.8e-11  Score=80.66  Aligned_cols=58  Identities=33%  Similarity=0.559  Sum_probs=48.8

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC---CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---RTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++.+..            .|.+|++.+++++..   ++++|++++||||||.+++.+++++|+
T Consensus       132 ~~~~g~~~~~~~~~~~------------~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~  192 (391)
T PRK07309        132 VNLVGAEIVEIDTTEN------------DFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALA  192 (391)
T ss_pred             HHHcCCEEEEEecCCc------------CCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHH
Confidence            3567999999997642            678999999988853   689999999999999999988888876

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.13  E-value=1.4e-10  Score=78.54  Aligned_cols=57  Identities=33%  Similarity=0.641  Sum_probs=50.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++.+.             +|.+|++++++.+.++++++++++|+||||.+++.+++.++++
T Consensus       129 ~~~g~~~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~  185 (361)
T PRK00950        129 KAHGAKPVYAKREE-------------DFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEEDIRKILE  185 (361)
T ss_pred             HHcCCEEEEeecCC-------------CCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCcCHHHHHHHHH
Confidence            56789999988543             6789999999998878999999999999999999999999874

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.13  E-value=1.5e-10  Score=79.35  Aligned_cols=60  Identities=23%  Similarity=0.413  Sum_probs=49.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh-cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF-SSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.+++..++          ++|.+|++++.+.. .+++++|++||||||||.+++.+++.++++
T Consensus       119 ~~~g~~~~~v~~~~~~----------~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~  179 (364)
T PRK04781        119 RLQNAPLVEVPLVDGA----------DGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQ  179 (364)
T ss_pred             HHcCCEEEEEecCCCc----------cCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHH
Confidence            5679999999985321          16778998886554 678999999999999999999999998863

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.13  E-value=1.2e-10  Score=80.56  Aligned_cols=58  Identities=31%  Similarity=0.442  Sum_probs=50.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.+++..++           +|.+|++.+++++.++++++++++||||||.+++.+++++|+
T Consensus       138 ~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~  195 (403)
T TIGR01265       138 AFSGLEVRLYDLLPEK-----------DWEIDLDGLEALADEKTVAIVVINPSNPCGSVFSRDHLQKIA  195 (403)
T ss_pred             HHcCCEEEEecCCccc-----------CCccCHHHHHHHhCcCccEEEEecCCCCCCCCCCHHHHHHHH
Confidence            4578999999886543           688999999999888899999999999999999988877765

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.12  E-value=1.4e-10  Score=78.15  Aligned_cols=57  Identities=26%  Similarity=0.583  Sum_probs=50.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|++++++.+.+++++|++++|+||||.+++.+++.++++
T Consensus       113 ~~~g~~~~~~~~~~-------------~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~l~~  169 (346)
T TIGR01141       113 KIHGAEVVKVPLDE-------------DGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLE  169 (346)
T ss_pred             HHcCCeEEEeccCC-------------CCCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            46799999999875             5678999999988888999999999999999999999999874

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.11  E-value=1.4e-10  Score=79.05  Aligned_cols=59  Identities=27%  Similarity=0.426  Sum_probs=46.9

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCc---eeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADF---KLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~---~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.++++.++           .+   ..+++.+++.. ++++++++||||||||.+++.++|.++++
T Consensus       114 ~~~~g~~~~~v~~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~~l~nP~NPTG~~~~~~~l~~l~~  175 (360)
T PRK07392        114 LRAFGATVKELPLPLDQ-----------PSPGLTLRLQTLPPQL-TPNDGLLLNNPHNPTGKLWSREAILPLLE  175 (360)
T ss_pred             HHHcCCeEEEEeccccc-----------CCcccccCHHHHHHhc-cCCCEEEEeCCCCCCCCCcCHHHHHHHHH
Confidence            35689999999997643           33   45677776654 46899999999999999999999998863

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.11  E-value=1e-10  Score=79.05  Aligned_cols=53  Identities=26%  Similarity=0.429  Sum_probs=42.6

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.+|++.              +.++.+.+++   .++|+|++||||||||.+++.+++.+|+
T Consensus        96 ~~~~G~~v~~vp~~~--------------~~~~~~~l~~---~~~k~v~l~nP~NPTG~~~s~~~~~~l~  148 (332)
T PRK06425         96 AFTHGIRISALPFNL--------------INNNPEILNN---YNFDLIFIVSPDNPLGNLISRDSLLTIS  148 (332)
T ss_pred             HHHcCCeEEEEeCCc--------------ccCcHHHHhh---cCCCEEEEeCCCCCcCCccCHHHHHHHH
Confidence            467899999999864              2245555543   3789999999999999999999998886

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.11  E-value=1.4e-10  Score=80.11  Aligned_cols=58  Identities=40%  Similarity=0.745  Sum_probs=49.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ...+++++.++++.++           +|.+|++++++++.+++++++++||+||||.+++.+++.+++
T Consensus       135 ~~~~~~~~~v~~~~~~-----------~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~  192 (402)
T PRK06107        135 LANDGTPVIVACPEEQ-----------GFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSRAELRALA  192 (402)
T ss_pred             HHcCCEEEEecCCccc-----------CCCCCHHHHHhhcCcCceEEEEECCCCCCCcCcCHHHHHHHH
Confidence            3456778888876433           688999999999888899999999999999999999988876

>PRK08363 alanine aminotransferase; Validated

Probab=99.11  E-value=1.4e-10  Score=79.90  Aligned_cols=57  Identities=26%  Similarity=0.563  Sum_probs=47.2

Q ss_pred             ccCCCeEEEe-eCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYI-PLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v-~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.+ +++.+            +|.+|++.+++.+.+++++|+++|||||||.+++.+++++|+
T Consensus       135 ~~~g~~~v~~~~~~~~------------~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~  192 (398)
T PRK08363        135 KFYGGVPVEYRTIEEE------------GWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKTLKEIL  192 (398)
T ss_pred             HHcCCEEEEecccccc------------CCcCCHHHHHhhCCcceEEEEEECCCCCCCcCcCHHHHHHHH
Confidence            4568888887 44332            678899999999988899999999999999999988877765

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.10  E-value=9.8e-11  Score=78.97  Aligned_cols=59  Identities=37%  Similarity=0.669  Sum_probs=49.9

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.+++..++           +|.+|+++|++.+++      ++++|++++||||||.+++.+++++|+
T Consensus       110 ~~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~  174 (363)
T PF00155_consen  110 ARLLGAEVIPVPLDSEN-----------DFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELA  174 (363)
T ss_dssp             HHHTTSEEEEEEEEETT-----------TTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHH
T ss_pred             ccccCceeeeccccccc-----------cccccccccccccccccccccccceeeecccccccccccccccccchh
Confidence            45679999999987554           899999999998876      678999999999999999999999985

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.09  E-value=1.7e-10  Score=78.90  Aligned_cols=59  Identities=32%  Similarity=0.577  Sum_probs=50.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.+.          ++|.+|++++++.+.+++++++++||+||||.+++.+++++|+
T Consensus       125 ~~~g~~~~~v~~~~~~----------~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~i~  183 (380)
T PRK06225        125 SRFGAEVIEVPIYSEE----------CNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKEFA  183 (380)
T ss_pred             HHhCceEEeecccccc----------CCccCCHHHHHhhcCCCceEEEEeCCCCCCCcCCCHHHHHHHH
Confidence            5678999999975321          1688999999999988899999999999999999988888775

>PRK09148 aminotransferase; Validated

Probab=99.09  E-value=2.3e-10  Score=79.27  Aligned_cols=58  Identities=21%  Similarity=0.229  Sum_probs=46.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.++           .|..+++++.+...+++++++++|||||||.+++.+++++|+
T Consensus       134 ~~~g~~v~~v~~~~~~-----------~~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~  191 (405)
T PRK09148        134 IMAGGVIRSVPAEPDE-----------EFFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVV  191 (405)
T ss_pred             HhcCCEEEEEeCCCCC-----------CCccCHHHHHhhccccceEEEEeCCCCCCCcCCCHHHHHHHH
Confidence            5679999999997643           455566655555556889999999999999999999888775

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.06  E-value=3.4e-10  Score=76.43  Aligned_cols=53  Identities=30%  Similarity=0.375  Sum_probs=45.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             +|.+|++++++    .+++++++|||||||.+++.+++.+|++
T Consensus       119 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~----~~~~v~~~~P~NPtG~~~~~~~~~~l~~  171 (353)
T PRK05387        119 GLYGIPYEEIPLDD-------------DFSIDVEDYLR----PNGGIIFPNPNAPTGIALPLAEIERILA  171 (353)
T ss_pred             HHcCCEEEEeecCC-------------CCCCCHHHHHh----cCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            56789999999864             67789998864    4688999999999999999999999873

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.05  E-value=4.2e-10  Score=77.10  Aligned_cols=58  Identities=34%  Similarity=0.571  Sum_probs=48.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCcee-CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKL-DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~-d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.+.           +|.+ +++++++++.+++++|+++|||||||.+++.+++++|+
T Consensus       130 ~~~g~~~~~v~~~~~~-----------g~~~~~~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~  188 (397)
T PRK07568        130 TSAGVKIVPVTTKIEE-----------GFHLPSKEEIEKLITPKTKAILISNPGNPTGVVYTKEELEMLA  188 (397)
T ss_pred             HHcCCEEEEeecCccc-----------CCCCCCHHHHHHhcCccceEEEEECCCCCCCccCCHHHHHHHH
Confidence            5678999999986432           4553 68999999988899999999999999999988887775

>PLN02672 methionine S-methyltransferase

Probab=99.04  E-value=3.5e-10  Score=86.94  Aligned_cols=60  Identities=23%  Similarity=0.416  Sum_probs=51.4

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEEEEeCCC-CccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLIILNTPH-NPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~P~-NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.+|++.++           +|.+|++.+++++.. +.++|++|||| ||||.+++.+++++|++
T Consensus       795 a~~~Ga~vv~Vpl~~e~-----------gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Lle  856 (1082)
T PLN02672        795 AKFLKANFRRIPTKSSD-----------GFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILS  856 (1082)
T ss_pred             HHHcCCEEEEEeccccc-----------CCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHH
Confidence            45689999999997543           799999999999865 45689999997 99999999999998863

>PRK07908 hypothetical protein; Provisional

Probab=99.02  E-value=5.2e-10  Score=75.83  Aligned_cols=53  Identities=28%  Similarity=0.468  Sum_probs=44.4

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.             +|.+|++.+    .+++|+++++|||||||.+++.++|.+++
T Consensus       113 ~~~~G~~i~~v~~~~-------------~~~~d~~~l----~~~~~~i~l~np~NPTG~~~~~~~l~~l~  165 (349)
T PRK07908        113 LRAAGIPVHRVVLDP-------------PFRLDPAAV----PDDADLVVIGNPTNPTSVLHPAEQLLALR  165 (349)
T ss_pred             HHHcCCEEEeeccCc-------------ccCcChhHh----ccCCCEEEEcCCCCCCCCCcCHHHHHHHH
Confidence            356799999999875             467888754    45789999999999999999999999886

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.01  E-value=7.3e-10  Score=76.20  Aligned_cols=57  Identities=21%  Similarity=0.237  Sum_probs=51.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|++++++++++++++|++++|+||||.+++.++|.++++
T Consensus       131 ~~~g~~v~~v~~~~-------------~~~~d~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~l~~  187 (401)
T PRK10874        131 QQTGAKVVKLPLGA-------------DRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAITLAH  187 (401)
T ss_pred             HHhCCEEEEEecCC-------------CCcCCHHHHHHhcCcCcEEEEEeCCcccccCcCCHHHHHHHHH
Confidence            56799999999864             5678999999999999999999999999999999999998873

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.00  E-value=9.5e-10  Score=75.58  Aligned_cols=57  Identities=19%  Similarity=0.286  Sum_probs=51.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|++++++++.+++++|++++|+||||.+++.++|.++++
T Consensus       128 ~~~g~~v~~v~~~~-------------~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~~~~  184 (398)
T TIGR03392       128 QQTGAKVVKLPIGA-------------DLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAITLAH  184 (398)
T ss_pred             HHcCcEEEEEecCC-------------CCCcCHHHHHHHhccCceEEEEECccccccccCCHHHHHHHHH
Confidence            56799999999875             5668999999999889999999999999999999999988874

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.00  E-value=1.1e-09  Score=75.03  Aligned_cols=56  Identities=23%  Similarity=0.433  Sum_probs=46.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh-cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF-SSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +.+|++++.+|++.             + .+|++++.+.+ ..++++|++||||||||.+++.+++.++++
T Consensus       126 ~~~g~~~~~vp~~~-------------~-~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~  182 (369)
T PRK08153        126 AGFGGRLVTVPYRD-------------D-REDLDALLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIE  182 (369)
T ss_pred             HHcCCeEEEeeCCC-------------C-CCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            45788999999854             2 36888887766 467899999999999999999999998863

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=98.99  E-value=3.2e-10  Score=78.50  Aligned_cols=47  Identities=28%  Similarity=0.560  Sum_probs=37.5

Q ss_pred             EEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            9 PIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         9 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++.++++.++           +|.++++      .+++|+|++||||||||.+++.+++++|++
T Consensus       157 ~~~v~~~~~~-----------~~~~d~~------~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~  203 (409)
T PRK07590        157 IVYLPCTAEN-----------NFVPELP------EEKVDIIYLCFPNNPTGTVLTKEQLKAWVD  203 (409)
T ss_pred             eeEeeccccc-----------CCcccCc------ccCceEEEEeCCCCCcCCcCCHHHHHHHHH
Confidence            8888887543           5655542      257899999999999999999999998863

>KOG0256|consensus

Probab=98.95  E-value=1.5e-09  Score=76.72  Aligned_cols=57  Identities=23%  Similarity=0.431  Sum_probs=50.3

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc------CCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS------SRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~------~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +.|+++++|.+..++           +|+++.+++|++..      .++|.|+++||+||.|.+++++++..++
T Consensus       190 rTgveivpv~c~Ss~-----------~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll  252 (471)
T KOG0256|consen  190 RTGVEIVPVHCSSSN-----------GFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLL  252 (471)
T ss_pred             ccCceEEEEEeecCC-----------CccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHH
Confidence            468999999998875           89999999988774      2689999999999999999999998876

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=98.95  E-value=1.8e-09  Score=73.84  Aligned_cols=57  Identities=21%  Similarity=0.396  Sum_probs=50.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|++.+++++.++++++++++|+||||.+++.++|.++++
T Consensus       111 ~~~G~~v~~v~~~~-------------~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~  167 (382)
T TIGR03403       111 ESLGVEVTYLPINE-------------QGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICK  167 (382)
T ss_pred             HHCCCEEEEEecCC-------------CCCCCHHHHHHhcccCCeEEEEEcccCCCccccCHHHHHHHHH
Confidence            45789999999875             5668899999999888999999999999999999999998863

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=98.94  E-value=1.5e-09  Score=73.70  Aligned_cols=52  Identities=31%  Similarity=0.627  Sum_probs=41.3

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.             +|.++...    + .++++++++|||||||.+++.+++++|+
T Consensus       113 ~~~~g~~~~~v~~~~-------------~~~~~~~~----~-~~~~~i~i~nP~NPTG~~~s~~~l~~l~  164 (335)
T PRK14808        113 AKAVGAKFLEVPLTK-------------DLRIPEVN----V-GEGDVVFIPNPNNPTGHVFEREEIERIL  164 (335)
T ss_pred             HHHcCCeEEEecCCC-------------cCCCChhH----c-cCCCEEEEeCCCCCCCCCcCHHHHHHHH
Confidence            467899999999875             44444332    2 3579999999999999999999999886

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=98.93  E-value=1.7e-09  Score=74.64  Aligned_cols=57  Identities=28%  Similarity=0.346  Sum_probs=50.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|++++++++.+++++|++++|+||||.+++.++|.++++
T Consensus       135 ~~~g~~v~~v~~~~-------------~~~~d~~~l~~~i~~~t~lv~l~~~~n~tG~~~~~~~i~~~~~  191 (406)
T PRK09295        135 ARVGAELRVIPLNP-------------DGTLQLETLPALFDERTRLLAITHVSNVLGTENPLAEMIALAH  191 (406)
T ss_pred             HHcCcEEEEEecCC-------------CCCCCHHHHHHhcCCCcEEEEEecchhcccccCCHHHHHHHHH
Confidence            45789999999875             5668999999999889999999999999999999999988863

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=98.92  E-value=3.2e-09  Score=72.70  Aligned_cols=58  Identities=24%  Similarity=0.424  Sum_probs=51.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.+            ++.++++++++++.+++++|++++|+||||.+++.++|.++++
T Consensus       126 ~~~g~~~~~~~~~~~------------~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~i~~~~~  183 (397)
T TIGR01976       126 ERAGAKVKWARVDEA------------TGELHPDDLASLLSPRTRLVAVTAASNTLGSIVDLAAITELVH  183 (397)
T ss_pred             HhcCCEEEEEecccc------------CCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCCHHHHHHHHH
Confidence            457999999998753            4668999999999888999999999999999999999998874

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=98.92  E-value=9.9e-10  Score=75.93  Aligned_cols=48  Identities=31%  Similarity=0.590  Sum_probs=37.8

Q ss_pred             eEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            8 VPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         8 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +++.++++.++           +|.+++..     ..++|+|++||||||||.+++.+++++|+
T Consensus       152 ~~~~v~~~~~~-----------~~~~~~~~-----~~~~~~i~l~nP~NPTG~~~s~~~~~~l~  199 (402)
T TIGR03542       152 KITYLPCTKEN-----------NFIPDLPE-----EPKIDIIYLCSPNNPTGTVLTKEQLKELV  199 (402)
T ss_pred             eEEEeecchhh-----------CCCCCccc-----cCCceEEEEeCCCCCCCccCCHHHHHHHH
Confidence            88888886543           56665422     24789999999999999999999988876

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=98.91  E-value=2.8e-09  Score=72.30  Aligned_cols=56  Identities=20%  Similarity=0.341  Sum_probs=49.4

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..|++++.++.+.             ++.+|++++++++.++++++++++|+||||.+++.++|.++++
T Consensus       109 ~~g~~~~~v~~~~-------------~~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~~~~i~~l~~  164 (376)
T TIGR01977       109 QIGVEITIVKCDN-------------EGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQ  164 (376)
T ss_pred             HcCcEEEEEecCC-------------CCCcCHHHHHHhcCCCCeEEEEECCCCCccccCCHHHHHHHHH
Confidence            4588999998864             5668999999999889999999999999999999999998874

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PRK02948 cysteine desulfurase; Provisional

Probab=98.90  E-value=2.7e-09  Score=72.91  Aligned_cols=57  Identities=19%  Similarity=0.283  Sum_probs=50.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|++++++++.+++++|++++|+||||.+++.++|.++++
T Consensus       109 ~~~g~~v~~v~~~~-------------~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~  165 (381)
T PRK02948        109 ESQGYTVTEIPVDK-------------SGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLK  165 (381)
T ss_pred             HhCCCEEEEEeeCC-------------CCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehhHHHHHHHHH
Confidence            45688999999874             5678999999999888999999999999999999999998863

>PRK08175 aminotransferase; Validated

Probab=98.90  E-value=2.6e-09  Score=73.60  Aligned_cols=55  Identities=31%  Similarity=0.449  Sum_probs=43.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc---CCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS---SRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.++           .|   .+++++++.   +++++|++++||||||.+++.+++++|+
T Consensus       133 ~~~g~~~~~v~~~~~~-----------~~---~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~  190 (395)
T PRK08175        133 VIAGAQVRSVPLVEGV-----------DF---FNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVV  190 (395)
T ss_pred             HHcCCeEEEEecccCC-----------Cc---HHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHH
Confidence            4578999999987643           33   566776664   4789999999999999999998888775

>KOG0633|consensus

Probab=98.90  E-value=4.8e-09  Score=71.36  Aligned_cols=57  Identities=25%  Similarity=0.487  Sum_probs=51.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc--CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS--SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ...+++++.+|+.+             +|+++.|++.+.+.  +.+|++|+++|+||||..+..+.|.++++
T Consensus       129 ~iNd~eVvkvpl~p-------------dF~lnvdai~evl~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe  187 (375)
T KOG0633|consen  129 AINDAEVVKVPLNP-------------DFSLNVDAIAEVLELDSKIKCIFLTSPGNPTGSIIKEDDILKILE  187 (375)
T ss_pred             ecCCceEEEecCCC-------------CccccHHHHHHHHhccccceEEEEcCCCCCCcccccHHHHHHHHh
Confidence            45789999999998             89999999988874  46899999999999999999999999874

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=98.88  E-value=3.4e-09  Score=75.38  Aligned_cols=64  Identities=19%  Similarity=0.346  Sum_probs=48.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCce--eCHHHHHhhhc----CCccEEEEeCCCCccc-cCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFK--LDPAELESKFS----SRTKLIILNTPHNPLG-KVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~--~d~~~l~~~~~----~~~~~i~l~~P~NPtG-~~~~~~~l~~l~   71 (72)
                      +..|++++.++++...+     ....+.|.  +|+++|++.++    +++++|++++|+|||| .+++.+++++|+
T Consensus       134 ~~~G~~~v~v~~~~~~~-----~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~  204 (460)
T PRK13238        134 ELNGATAVDLVIDEALD-----TGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVY  204 (460)
T ss_pred             HHcCCEEEEEecccccc-----ccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHH
Confidence            46799999999875200     00011454  99999999997    3799999999999998 999998777664

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=98.86  E-value=2.9e-09  Score=73.66  Aligned_cols=41  Identities=34%  Similarity=0.556  Sum_probs=35.4

Q ss_pred             CceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        30 ~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      .|.+|+++|+  +..+++++++||||||||.+++.+++++|++
T Consensus       166 ~~~~d~~~l~--~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~  206 (416)
T PRK09440        166 KYHVDFEHLH--IDEDTGAICVSRPTNPTGNVLTDEELEKLDA  206 (416)
T ss_pred             ccCCCHHHcc--cCCCceEEEEecCCCCCCccCCHHHHHHHHH
Confidence            3678999887  4567899999999999999999999988863

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=98.86  E-value=6.6e-09  Score=70.52  Aligned_cols=57  Identities=33%  Similarity=0.455  Sum_probs=50.7

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|++++++.+.+++++|++++|+||||.+++.++|.++|+
T Consensus       110 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~  166 (373)
T cd06453         110 ERTGAKLKVVPVDD-------------DGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAH  166 (373)
T ss_pred             hhcCcEEEEeecCC-------------CCCcCHHHHHHHhcCCceEEEEeCcccccCCcCCHHHHHHHHH
Confidence            45789999999874             5678999999999889999999999999999999999998874

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=98.86  E-value=4.9e-09  Score=72.81  Aligned_cols=57  Identities=28%  Similarity=0.398  Sum_probs=49.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|++++++.+.+++++|++++|+||||.+++.++|.++++
T Consensus       144 ~~~g~~v~~v~~~~-------------~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~I~~l~~  200 (424)
T PLN02855        144 QKTGAVLKFVGLTP-------------DEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAH  200 (424)
T ss_pred             HHcCCEEEEEecCC-------------CCCcCHHHHHHHhccCceEEEEeCccccccccCCHHHHHHHHH
Confidence            45789999999875             3447899999999889999999999999999999999988863

>PRK08354 putative aminotransferase; Provisional

Probab=98.85  E-value=4e-09  Score=70.79  Aligned_cols=38  Identities=32%  Similarity=0.586  Sum_probs=33.0

Q ss_pred             eCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790           33 LDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus        33 ~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +|++.+++.+. +++++++||||||||.+++.+++++|+
T Consensus       106 ~d~~~l~~~~~-~~~~vi~~~P~NPTG~~~~~~~l~~l~  143 (311)
T PRK08354        106 NDPEKLEELVE-RNSVVFFCNPNNPDGKFYNFKELKPLL  143 (311)
T ss_pred             CCHHHHHHhhc-CCCEEEEecCCCCCCCccCHHHHHHHH
Confidence            46788888776 578999999999999999999999886

>PRK06234 methionine gamma-lyase; Provisional

Probab=98.83  E-value=8.3e-09  Score=71.94  Aligned_cols=52  Identities=25%  Similarity=0.341  Sum_probs=45.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++++++..                  |++++++++.+++|+|++++|+||||.+.+.++|.++++
T Consensus       125 ~~~G~~v~~vd~~------------------d~e~l~~~i~~~tklI~iesP~NPtG~v~dl~~I~~la~  176 (400)
T PRK06234        125 TRYGVEVTFVDTS------------------NLEEVRNALKANTKVVYLETPANPTLKVTDIKAISNIAH  176 (400)
T ss_pred             hhCCeEEEEECCC------------------CHHHHHHHhccCCeEEEEECCCCCCCCcCCHHHHHHHHH
Confidence            4578888887653                  578899999889999999999999999999999999874

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=98.83  E-value=7.4e-09  Score=69.89  Aligned_cols=57  Identities=18%  Similarity=0.174  Sum_probs=50.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|++++++.+++ ++++|++++|+||+|.+++.++|.++++
T Consensus        94 ~~~g~~~~~v~~~~-------------~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~  151 (356)
T cd06451          94 ERYGADVDVVEKPW-------------GEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAK  151 (356)
T ss_pred             HHhCCCeEEeecCC-------------CCCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHHHHH
Confidence            45789999999875             567899999999976 8999999999999999999999998874

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=98.82  E-value=9.2e-09  Score=70.01  Aligned_cols=60  Identities=13%  Similarity=0.272  Sum_probs=50.8

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-------CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-------SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-------~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.++++..+           +|.+|++++++++.       +++++|++++|+||||.+.+.+++.++++
T Consensus       100 ~~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~  166 (361)
T cd06452         100 AERAGLNVREVPNTGHP-----------EYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCH  166 (361)
T ss_pred             HHhcCCEEEEEecCCCC-----------CcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHH
Confidence            35679999999987643           57899999998875       36899999999999999999999988763

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK08064 cystathionine beta-lyase; Provisional

Probab=98.80  E-value=9.2e-09  Score=71.52  Aligned_cols=52  Identities=27%  Similarity=0.360  Sum_probs=45.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++++++.                  |++++++++++++|+|++++|+||||.+.+.++|.++++
T Consensus       114 ~~~G~~v~~v~~~------------------d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la~  165 (390)
T PRK08064        114 SRFGIEHTFVDMT------------------NLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAK  165 (390)
T ss_pred             HHcCCEEEEECCC------------------CHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHHH
Confidence            3468888888763                  578899999889999999999999999999999998874

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=98.80  E-value=9.8e-09  Score=70.50  Aligned_cols=57  Identities=37%  Similarity=0.534  Sum_probs=50.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.++++++++++.+++++|++++|+||||.+++.++|.++++
T Consensus       130 ~~~g~~~~~v~~~~-------------~~~~~~~~l~~~i~~~~~lv~~~~~~~~tG~~~~~~~i~~~~~  186 (403)
T TIGR01979       130 ERTGATLKFIPLDD-------------DGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAH  186 (403)
T ss_pred             HhcCcEEEEEecCC-------------CCCCCHHHHHHHhccCCeEEEEEcccccccccCCHHHHHHHHH
Confidence            45789999999874             5668999999999989999999999999999999999988863

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=98.80  E-value=1.1e-08  Score=69.19  Aligned_cols=56  Identities=20%  Similarity=0.323  Sum_probs=49.6

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..|++++.++++.             ++.+|++++++++.+++++|++++|+||||.+++.++|.++++
T Consensus       110 ~~G~~v~~v~~~~-------------~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~  165 (353)
T TIGR03235       110 RNGFTVTYLPVDE-------------SGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLE  165 (353)
T ss_pred             hcCCEEEEEccCC-------------CCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHHHHHHH
Confidence            4688999999874             5668999999999888999999999999999999999998873

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK07671 cystathionine beta-lyase; Provisional

Probab=98.80  E-value=1.3e-08  Score=70.50  Aligned_cols=52  Identities=29%  Similarity=0.393  Sum_probs=44.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +.+|+++++++..                  |++++++++++++|+|++++|+||||.+.+.++|.++++
T Consensus       110 ~~~G~~v~~v~~~------------------d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~  161 (377)
T PRK07671        110 NRFGIEHTFVDTS------------------NLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAK  161 (377)
T ss_pred             hcCCeEEEEECCC------------------CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHH
Confidence            3467888877632                  688999999889999999999999999999999999874

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=98.77  E-value=7.9e-09  Score=69.94  Aligned_cols=47  Identities=21%  Similarity=0.345  Sum_probs=36.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++                     .+++.+ .+++++++||||||||.+++.+++.+|+
T Consensus       104 ~~~g~~~~~v~~~---------------------~~~~~~-~~~~~v~l~nP~NPTG~~~s~~~l~~l~  150 (330)
T PRK05664        104 RRAGHQVRELDEA---------------------EVEAAL-DSLDVLVVVNPNNPTGRRFDPARLLAWH  150 (330)
T ss_pred             HHcCCeEEEechh---------------------hHhhhh-cCCCEEEEeCCcCCCCCccCHHHHHHHH
Confidence            4567777777653                     233334 3688999999999999999999999886

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=98.76  E-value=2e-08  Score=71.14  Aligned_cols=66  Identities=23%  Similarity=0.337  Sum_probs=48.7

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCC----ccEEEEeCCCCcc-ccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSR----TKLIILNTPHNPL-GKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~----~~~i~l~~P~NPt-G~~~~~~~l~~l~   71 (72)
                      ...|++++.+++++..+-+   ......|.+|+++|+++++++    +++|++++|+||+ |.+++.+.+++++
T Consensus       109 ~~~Ga~pv~v~i~~~~~~~---~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~  179 (431)
T cd00617         109 EANGAVPVDLVIDEAHDAQ---ELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVR  179 (431)
T ss_pred             HhCCCEeEEEecccccccc---cccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHH
Confidence            5679999999997542000   000013459999999999765    7899999999998 9999999876654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=98.75  E-value=1.8e-08  Score=68.79  Aligned_cols=56  Identities=30%  Similarity=0.465  Sum_probs=49.5

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..|++++.++++.             ++.+|++++++.+.++++++++++++||||.+++.++|.++++
T Consensus       108 ~~G~~v~~v~~~~-------------~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~I~~l~~  163 (379)
T TIGR03402       108 KQGYKVTYLPVDE-------------EGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAK  163 (379)
T ss_pred             HcCCEEEEEccCC-------------CCcCCHHHHHHhcCCCcEEEEEEcccCCeeecccHHHHHHHHH
Confidence            3689999998864             5568999999999889999999999999999999999998873

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK14012 cysteine desulfurase; Provisional

Probab=98.74  E-value=2.2e-08  Score=69.20  Aligned_cols=56  Identities=20%  Similarity=0.242  Sum_probs=50.0

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..|++++.++++.             ++.+|++++++++.+++++|++++++||||.+++.++|.++|+
T Consensus       116 ~~g~~~~~v~~~~-------------~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~  171 (404)
T PRK14012        116 REGFEVTYLDPQS-------------NGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICR  171 (404)
T ss_pred             hCCCEEEEEccCC-------------CCcCCHHHHHHhcCCCCEEEEEECcCCCccchhhHHHHHHHHH
Confidence            3589999998874             5678999999999989999999999999999999999998873

>PLN02721 threonine aldolase

Probab=98.74  E-value=2.1e-08  Score=67.28  Aligned_cols=56  Identities=21%  Similarity=0.284  Sum_probs=45.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-------CCccEEEEeCC-CCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-------SRTKLIILNTP-HNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-------~~~~~i~l~~P-~NPtG~~~~~~~l~~l~   71 (72)
                      ...|++++.++.+.             +|.+|++++++++.       +++++|+++++ +||+|.+++.+.+++|+
T Consensus       101 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~  164 (353)
T PLN02721        101 TLGGVHPRTVKNNE-------------DGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVG  164 (353)
T ss_pred             hhcCceeEecCCCc-------------CCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHH
Confidence            45688899988764             66789999999987       58999999875 78999999987666554

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=98.72  E-value=3e-08  Score=68.94  Aligned_cols=52  Identities=29%  Similarity=0.383  Sum_probs=44.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +.+|+++++++++                  |++++++++.+++|+|++++|+||||.+++.++|.++|+
T Consensus       122 ~~~G~~v~~vd~~------------------d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~  173 (390)
T PRK08133        122 ARFGIETTFVDLT------------------DLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAH  173 (390)
T ss_pred             HHcCcEEEEECCC------------------CHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHH
Confidence            3468888888764                  578889999889999999999999999999999999874

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=98.72  E-value=1.4e-08  Score=69.16  Aligned_cols=27  Identities=19%  Similarity=0.252  Sum_probs=24.6

Q ss_pred             CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790           45 RTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus        45 ~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      .++++++||||||||.+++.+++.+++
T Consensus       130 ~~~~v~l~nPnNPTG~~~s~~~l~~l~  156 (339)
T PRK06959        130 ALTHLIVVNPNNPTAERLPAARLLRWH  156 (339)
T ss_pred             cCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence            457999999999999999999999875

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=98.71  E-value=3.5e-08  Score=67.69  Aligned_cols=60  Identities=17%  Similarity=0.280  Sum_probs=50.6

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-------CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-------RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.++...+.           +|.+|+++|++++.+       ++++|++++|+||||...+.++|.++++
T Consensus       107 ~~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~  173 (370)
T TIGR02539       107 AERAGLNVKEVPHTGHP-----------EYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCR  173 (370)
T ss_pred             HHHcCCEEEEEecCCcc-----------cCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHH
Confidence            35678999999976433           688999999998852       6789999999999999999999998873

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=98.71  E-value=3.3e-08  Score=68.37  Aligned_cols=56  Identities=20%  Similarity=0.280  Sum_probs=49.8

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..|++++.++++.             ++.+|++++++++.++++++++++++||||.+.+.++|.++++
T Consensus       114 ~~g~~v~~v~~~~-------------~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~l~~  169 (402)
T TIGR02006       114 REGFEVTYLPPKS-------------NGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICR  169 (402)
T ss_pred             hcCCEEEEEccCC-------------CCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHHHHH
Confidence            4589999999875             5668999999999888999999999999999999999998873

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=98.70  E-value=3.4e-08  Score=69.18  Aligned_cols=39  Identities=28%  Similarity=0.464  Sum_probs=35.5

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |++++++++++++|+|++++|+||||.+.+.++|.++++
T Consensus       134 d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~  172 (405)
T PRK08776        134 DPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAH  172 (405)
T ss_pred             CHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHH
Confidence            678899988889999999999999999999999998873

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=98.70  E-value=4.1e-08  Score=68.60  Aligned_cols=39  Identities=44%  Similarity=0.617  Sum_probs=35.9

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |++++++++.+++|+|++++|+||||.+++.++|.++++
T Consensus       127 d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~  165 (388)
T PRK08861        127 DAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAK  165 (388)
T ss_pred             CHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHH
Confidence            688899999889999999999999999999999998874

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=98.69  E-value=3.8e-08  Score=68.76  Aligned_cols=39  Identities=33%  Similarity=0.502  Sum_probs=36.2

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |++++++++++++|+|++++|+||||.+++.++|.++++
T Consensus       138 d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~  176 (398)
T PRK08249        138 DHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAK  176 (398)
T ss_pred             CHHHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHH
Confidence            688999999889999999999999999999999998874

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=98.69  E-value=3.7e-08  Score=68.73  Aligned_cols=40  Identities=30%  Similarity=0.414  Sum_probs=36.9

Q ss_pred             eCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           33 LDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        33 ~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +|++++++++++++|+|++++|+||||.+++.++|.++++
T Consensus       138 ~d~e~l~~ai~~~tklV~lesp~NptG~v~dl~~I~~la~  177 (398)
T PRK07504        138 LDLDNWEKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIAN  177 (398)
T ss_pred             CCHHHHHHhcCcCceEEEEECCCCCCcEecCHHHHHHHHH
Confidence            4789999999889999999999999999999999999873

>PRK07049 methionine gamma-lyase; Validated

Probab=98.68  E-value=4.9e-08  Score=68.82  Aligned_cols=39  Identities=23%  Similarity=0.417  Sum_probs=31.9

Q ss_pred             CHHHHHhhhc-----CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFS-----SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~-----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |++.+++++.     +++|+|++++|+||||.+++.+++.+|++
T Consensus       158 d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~  201 (427)
T PRK07049        158 SEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVAD  201 (427)
T ss_pred             CHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHH
Confidence            4556655542     57999999999999999999999998873

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.68  E-value=3.6e-08  Score=69.66  Aligned_cols=52  Identities=27%  Similarity=0.418  Sum_probs=45.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +.+|++++++++.                  |++++++++++++++|++++|+||||.+++.++|.++++
T Consensus       125 ~~~Gv~v~~vd~~------------------d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~  176 (431)
T PRK08248        125 PKLGITVKFVDPS------------------DPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAH  176 (431)
T ss_pred             HhCCEEEEEECCC------------------CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHH
Confidence            4578888888753                  578899999889999999999999999999999998873

>PRK07503 methionine gamma-lyase; Provisional

Probab=98.68  E-value=4.1e-08  Score=68.63  Aligned_cols=52  Identities=27%  Similarity=0.410  Sum_probs=44.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++++++.                  |++++++++++++|+|++++|+||||.+.+.++|.++++
T Consensus       126 ~~~G~~v~~vd~~------------------d~~~l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~  177 (403)
T PRK07503        126 GEFGVTVRHVDLT------------------DPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAH  177 (403)
T ss_pred             hhCCEEEEEeCCC------------------CHHHHHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHH
Confidence            3467777777653                  578899999889999999999999999999999999874

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=98.68  E-value=4.8e-08  Score=68.05  Aligned_cols=52  Identities=25%  Similarity=0.328  Sum_probs=44.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..+|+++++++++                  |++++++++.+++|+|++++|+||+|.+++.++|.++++
T Consensus       120 ~~~G~~~~~vd~~------------------d~e~l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~  171 (391)
T TIGR01328       120 TKFGIQVDFINMA------------------IPEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAH  171 (391)
T ss_pred             hcCCeEEEEECCC------------------CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHH
Confidence            3467778777754                  578899999889999999999999999999999998873

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK06460 hypothetical protein; Provisional

Probab=98.67  E-value=4.7e-08  Score=67.73  Aligned_cols=52  Identities=21%  Similarity=0.153  Sum_probs=40.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++..++.+.                  .+.+++.+.+++|+|++++|+||||.+++.++|.++++
T Consensus       106 ~~~G~~v~~~~~~~------------------~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~~I~~la~  157 (376)
T PRK06460        106 KNWGVNVDASNPGS------------------DNIIEKAKSKRYDVVFVENITNPLLRVVDITELSKVCK  157 (376)
T ss_pred             HhhCcEEEEECCCC------------------HHHHHHhcCCCceEEEEECCCCCCCcccCHHHHHHHHH
Confidence            45677777776542                  23345555678999999999999999999999998873

>KOG0258|consensus

Probab=98.66  E-value=2.2e-08  Score=70.73  Aligned_cols=57  Identities=32%  Similarity=0.547  Sum_probs=48.6

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-----CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-----RTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-----~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      .+|+..+..-++++.           .|.+|.++|++.+.+     ++|++++-||.||||.+.+++.+++|+
T Consensus       180 l~~~~~v~YyLdEe~-----------~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~  241 (475)
T KOG0258|consen  180 LLGGTQVPYYLDEES-----------NWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGII  241 (475)
T ss_pred             HhCCcccceeecccc-----------CCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHH
Confidence            456777777778765           999999999988743     579999999999999999999999886

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=98.65  E-value=5.1e-08  Score=67.80  Aligned_cols=39  Identities=31%  Similarity=0.548  Sum_probs=36.0

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |++++++++++++|+|++++|+||||.+++.++|.++++
T Consensus       125 d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~  163 (382)
T TIGR02080       125 DEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAK  163 (382)
T ss_pred             CHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHH
Confidence            688999999889999999999999999999999998873

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=98.65  E-value=5.1e-08  Score=67.58  Aligned_cols=52  Identities=25%  Similarity=0.484  Sum_probs=45.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++++++.                  |++++++++++++|+|++++|+||+|.+++.++|.++|+
T Consensus       107 ~~~G~~v~~vd~~------------------d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~  158 (378)
T TIGR01329       107 PRSGVVVVHVDTT------------------DLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAH  158 (378)
T ss_pred             HHcCcEEEEeCCC------------------CHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHH
Confidence            3468888888753                  578899999889999999999999999999999998873

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PLN02651 cysteine desulfurase

Probab=98.65  E-value=6.5e-08  Score=66.02  Aligned_cols=56  Identities=23%  Similarity=0.354  Sum_probs=49.7

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..|++++.++++.             ++.+|+++++++++++++++++++++||||.+++.++|.++++
T Consensus       110 ~~g~~v~~v~~~~-------------~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I~~~~~  165 (364)
T PLN02651        110 QEGFEVTYLPVKS-------------DGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCR  165 (364)
T ss_pred             hcCCEEEEEccCC-------------CCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHHHHHHH
Confidence            4688999998864             5668999999999989999999999999999999999998874

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=98.64  E-value=6.2e-08  Score=67.82  Aligned_cols=52  Identities=19%  Similarity=0.343  Sum_probs=45.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++++++..                  |++++++++++++|+|++++|+||+|.+++.++|.++++
T Consensus       131 ~~~G~~v~~vd~~------------------d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~  182 (403)
T PRK07810        131 PRWGVETVFVDGE------------------DLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAH  182 (403)
T ss_pred             HHcCcEEEEECCC------------------CHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHH
Confidence            4568888888642                  688999999889999999999999999999999998874

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=98.62  E-value=8.7e-08  Score=67.01  Aligned_cols=54  Identities=26%  Similarity=0.366  Sum_probs=48.2

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..|++++.++++.             + .+|++++++++++++++|++++| ||||.+.+.++|.++++
T Consensus       177 ~~G~~~~~v~~~~-------------~-~~d~~~l~~~i~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~  230 (447)
T PRK00451        177 GQGIEVVEVPYED-------------G-VTDLEALEAAVDDDTAAVVVQYP-NFFGVIEDLEEIAEIAH  230 (447)
T ss_pred             hCCcEEEEecCCC-------------C-CCCHHHHHHhcCCCeEEEEEECC-CCCCeeCCHHHHHHHHH
Confidence            4689999999864             5 68999999999889999999999 99999999999998874

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=98.61  E-value=9.7e-08  Score=66.39  Aligned_cols=39  Identities=33%  Similarity=0.467  Sum_probs=36.2

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |++++++++.+++|+|++++|+||||.+.+.++|.++++
T Consensus       135 d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~  173 (388)
T PRK07811        135 DLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAH  173 (388)
T ss_pred             CHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHHH
Confidence            689999999889999999999999999999999998874

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=98.61  E-value=7e-08  Score=67.06  Aligned_cols=39  Identities=31%  Similarity=0.453  Sum_probs=36.0

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |++++++++++++|+|++++|+||||.+++.++|.++++
T Consensus       123 d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~  161 (380)
T PRK06176        123 DLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAK  161 (380)
T ss_pred             CHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHH
Confidence            688899999889999999999999999999999998874

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=98.60  E-value=6.7e-08  Score=66.58  Aligned_cols=52  Identities=25%  Similarity=0.308  Sum_probs=43.7

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +.+|+++++++..                  |++++++++.+++|+|++++|+||+|...+.++|.++++
T Consensus       112 ~~~G~~v~~vd~~------------------d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~  163 (366)
T PRK08247        112 KKWNVRFVYVNTA------------------SLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAK  163 (366)
T ss_pred             hccCceEEEECCC------------------CHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHH
Confidence            3467787777652                  678899999889999999999999999999999888763

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=98.59  E-value=8.6e-08  Score=66.78  Aligned_cols=39  Identities=26%  Similarity=0.527  Sum_probs=36.0

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |++++++++.+++|+|++++|+||||.+++.+++.++++
T Consensus       126 d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~  164 (386)
T PRK08045        126 DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAR  164 (386)
T ss_pred             CHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHH
Confidence            688999999889999999999999999999999998873

>PLN02242 methionine gamma-lyase

Probab=98.59  E-value=1.2e-07  Score=66.80  Aligned_cols=39  Identities=26%  Similarity=0.302  Sum_probs=35.5

Q ss_pred             CHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |++++++++++ ++|+|++++|+||||.+++.++|.++++
T Consensus       151 d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~  190 (418)
T PLN02242        151 DLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAH  190 (418)
T ss_pred             CHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHH
Confidence            68899999987 5999999999999999999999998874

>PRK06767 methionine gamma-lyase; Provisional

Probab=98.58  E-value=1.1e-07  Score=65.97  Aligned_cols=39  Identities=36%  Similarity=0.522  Sum_probs=36.0

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |++++++++.+++|+|++++|+||||.+++.++|.++++
T Consensus       135 d~~~l~~~i~~~tklV~lesp~NptG~v~dl~~I~~la~  173 (386)
T PRK06767        135 TEADIENKIRPNTKLIFVETPINPTMKLIDLKQVIRVAK  173 (386)
T ss_pred             CHHHHHHhhCcCceEEEEeCCCCCCceecCHHHHHHHHH
Confidence            678899999889999999999999999999999999874

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=98.57  E-value=7.1e-08  Score=66.77  Aligned_cols=42  Identities=26%  Similarity=0.423  Sum_probs=38.5

Q ss_pred             ceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           31 FKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        31 ~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |..|+++++++++++||+|++++|+||||.+.+.+++.++++
T Consensus       122 ~~~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~la~  163 (364)
T PRK07269        122 YANTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAH  163 (364)
T ss_pred             ecCCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHHHH
Confidence            556899999999989999999999999999999999998874

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.57  E-value=1.3e-07  Score=66.70  Aligned_cols=39  Identities=31%  Similarity=0.405  Sum_probs=36.1

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |++++++++.+++|+|++++|+||||.+++.+++.++|+
T Consensus       132 d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~  170 (425)
T PRK06084        132 DIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAH  170 (425)
T ss_pred             CHHHHHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHH
Confidence            688999999889999999999999999999999998874

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=98.57  E-value=1.6e-07  Score=63.90  Aligned_cols=57  Identities=23%  Similarity=0.275  Sum_probs=48.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC--CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS--RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~--~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|+++++++++.  +++++++++|+||||..++.++|.++++
T Consensus       100 ~~~g~~~~~i~~~~-------------~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~  158 (368)
T PRK13479        100 EYLGIAHVVLDTGE-------------DEPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAK  158 (368)
T ss_pred             HHcCCcEEEEECCC-------------CCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHH
Confidence            56789999999864             456899999998853  4678999999999999999999998873

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=98.56  E-value=8.7e-08  Score=64.26  Aligned_cols=57  Identities=18%  Similarity=0.299  Sum_probs=48.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.+++++             ++.+|+++|++++.+      +++++++++|+||||.+.+.++|.++|+
T Consensus       113 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~  175 (345)
T cd06450         113 AYLDVKVRLVPVDE-------------DGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAE  175 (345)
T ss_pred             HHHhcCeEEeeeCC-------------CCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHH
Confidence            34588999999875             457899999999876      7889999999999999999999998874

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=98.55  E-value=1.4e-07  Score=66.16  Aligned_cols=52  Identities=25%  Similarity=0.295  Sum_probs=44.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++++++..                  |++++++++.+++++|++++|+||+|.+++.++|.++++
T Consensus       118 ~~~G~~v~~v~~~------------------d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~  169 (418)
T TIGR01326       118 KRLGIEVRFVDPD------------------DPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAH  169 (418)
T ss_pred             HHcCcEEEEECCC------------------CHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHH
Confidence            3568888887742                  678999999889999999999999999999999998874

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=98.55  E-value=1.4e-07  Score=65.32  Aligned_cols=52  Identities=27%  Similarity=0.399  Sum_probs=43.7

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +.+|++++++++.                  |++++++++.+++|+|++++|+||+|.+.+.+++.++|+
T Consensus       115 ~~~g~~v~~v~~~------------------d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~  166 (380)
T TIGR01325       115 PRFGIEVSFVDPT------------------DLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAH  166 (380)
T ss_pred             HHhCCEEEEECCC------------------CHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHH
Confidence            3467777777653                  578888888888999999999999999999999998874

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.55  E-value=1.7e-07  Score=66.48  Aligned_cols=53  Identities=23%  Similarity=0.236  Sum_probs=46.7

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..+|+++.+++..                 +|+++++++++++||+|++.+|+||++.+.+.++|.++|+
T Consensus       122 ~~~Gi~v~~vd~~-----------------~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~  174 (432)
T PRK06702        122 RKLGIDVTFFNPN-----------------LTADEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAK  174 (432)
T ss_pred             HHCCCEEEEECCC-----------------CCHHHHHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHH
Confidence            4578888888653                 3789999999999999999999999999999999999874

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.55  E-value=1.6e-07  Score=66.22  Aligned_cols=52  Identities=27%  Similarity=0.370  Sum_probs=43.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++++++..                  |++++++++++++|+|++++|+||+|.+++.++|.++++
T Consensus       124 ~~~G~~v~~vd~~------------------d~~~l~~ai~~~tklV~vesp~NptG~v~dl~~I~~la~  175 (427)
T PRK05994        124 KSFGWQVRWADAD------------------DPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAH  175 (427)
T ss_pred             HhcCcEEEEECCC------------------CHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHH
Confidence            3457777776642                  578899999889999999999999999999999998873

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=98.54  E-value=1.5e-07  Score=62.83  Aligned_cols=53  Identities=26%  Similarity=0.440  Sum_probs=42.9

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-------CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-------RTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ..|++++.++.+              .+.+|++++++++.+       ++++|+++||+|| |.+++.+++++|+
T Consensus        93 ~~g~~~~~v~~~--------------~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~  152 (338)
T cd06502          93 LSGVKLLPVPGE--------------NGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAIS  152 (338)
T ss_pred             HcCceEEeecCC--------------CCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHH
Confidence            468888888864              456899999999864       7899999999998 7777888877765

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK05939 hypothetical protein; Provisional

Probab=98.54  E-value=1.4e-07  Score=66.06  Aligned_cols=52  Identities=13%  Similarity=0.225  Sum_probs=44.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++++++..                  |++++++++.+++|+|++++|+||||.+.+.++|.++|+
T Consensus       107 ~~~G~~v~~v~~~------------------d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~  158 (397)
T PRK05939        107 RGLGVEVTMVDAT------------------DVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCR  158 (397)
T ss_pred             HhcCCEEEEECCC------------------CHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHH
Confidence            3467888887753                  578999999999999999999999999999999988873

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=98.50  E-value=2e-07  Score=63.09  Aligned_cols=37  Identities=27%  Similarity=0.533  Sum_probs=31.6

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      |++.+++.+ .+++++++++||||||.+++.+++.+|+
T Consensus       115 d~~~l~~~~-~~~~~v~i~~p~NPtG~~~~~~~~~~l~  151 (330)
T TIGR01140       115 DLDRLPAAL-EELDVLVLCNPNNPTGRLIPPETLLALA  151 (330)
T ss_pred             CHHHHHhhc-ccCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence            467788777 4688999999999999999999988775

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PLN02409 serine--glyoxylate aminotransaminase

Probab=98.50  E-value=2.1e-07  Score=64.69  Aligned_cols=56  Identities=11%  Similarity=-0.039  Sum_probs=47.9

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC----CccEEEEeCCCCccccCCCHHHHHHH
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS----RTKLIILNTPHNPLGKVFTREELEVI   70 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~----~~~~i~l~~P~NPtG~~~~~~~l~~l   70 (72)
                      ++..|++++.++.+.             +..++++++++++++    ++|+|++++++||||.+++.+++.++
T Consensus       103 ~~~~g~~v~~v~~~~-------------~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l  162 (401)
T PLN02409        103 MQRLNFDVDVVESPW-------------GQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKL  162 (401)
T ss_pred             HHHcCCceEEEECCC-------------CCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHH
Confidence            356799999999865             233689999999875    79999999999999999999999988

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=98.50  E-value=2.5e-07  Score=63.75  Aligned_cols=55  Identities=16%  Similarity=0.276  Sum_probs=45.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEE-EeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLII-LNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~-l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ...|+++++++++               +.+|+++++++++++|++++ +++|+||+|.+.+.++|.++|+
T Consensus       121 ~~~g~~~v~v~~~---------------~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~~~~i~~~a~  176 (363)
T TIGR01437       121 RLGGGKVVEAGYA---------------NECSAEQLEAAITEKTAAILYIKSHHCVQKSMLSVEDAAQVAQ  176 (363)
T ss_pred             HhcCCeEEEEcCC---------------CCCCHHHHHHhcChhceEEEEEecCCCCcCCcCCHHHHHHHHH
Confidence            3467888888753               34899999999999999766 6889999999999999998874

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=2.5e-07  Score=65.13  Aligned_cols=57  Identities=33%  Similarity=0.405  Sum_probs=52.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.+|++.             ++.++.+.+++.++++||+|.+++-+|.||.+.+.++|.++++
T Consensus       133 ~~~Ga~v~~i~~~~-------------~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~  189 (405)
T COG0520         133 KRTGAKVRVIPLDD-------------DGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAH  189 (405)
T ss_pred             HhcCcEEEEEecCC-------------CCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHHHH
Confidence            45699999999984             6778999999999999999999999999999999999999874

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=98.48  E-value=2.2e-07  Score=64.49  Aligned_cols=55  Identities=20%  Similarity=0.376  Sum_probs=48.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ...|+++++++++.+            +|.+|++++++++++++|+|+   |+||+|..++.++|.++|+
T Consensus        89 ~~~G~~~v~vd~d~~------------~~~~d~~~le~~i~~~tk~Ii---p~~~~G~~~d~~~I~~la~  143 (376)
T TIGR02379        89 VLRGAKIVFVDIRPD------------TMNIDETLIESAITHRTKAIV---PVHYAGVACDMDTIMALAN  143 (376)
T ss_pred             HHcCCEEEEEecCCC------------cCCCCHHHHHHhcCcCceEEE---EeCCCCCccCHHHHHHHHH
Confidence            457999999999863            688999999999988999997   7889999999999998874

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=98.48  E-value=3.5e-07  Score=61.87  Aligned_cols=57  Identities=28%  Similarity=0.283  Sum_probs=49.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++.+.             ++.+|+++|++++.+++++|++++++|+||.+.+.++|.++|+
T Consensus       122 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~l~~I~~l~~  178 (371)
T PRK13520        122 DMLGVELRRAPLDD-------------DYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDPIPELSKIAL  178 (371)
T ss_pred             HHcCceEEEecCCC-------------CCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHH
Confidence            45788999998764             5678999999999888888888999999999999999999874

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=98.48  E-value=3.8e-07  Score=61.85  Aligned_cols=58  Identities=29%  Similarity=0.349  Sum_probs=48.2

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.++.+.             ++.+|++++++++.+++.++++.+|+||||.+.+.++|.++++
T Consensus       123 ~~~~G~~~~~v~~~~-------------~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~~~~i~~l~~  180 (373)
T TIGR03812       123 AEMLGLELRYAPLDE-------------DYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIAL  180 (373)
T ss_pred             HHHcCCeEEEEeeCC-------------CCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCCHHHHHHHHH
Confidence            356799999999864             6778999999999877766666668999999999999999874

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.47  E-value=3.6e-07  Score=64.70  Aligned_cols=52  Identities=19%  Similarity=0.180  Sum_probs=45.8

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++++++.+                  |+++++++++++||+|++.+|+||+|.+.+.++|.++++
T Consensus       125 ~~~Gi~v~~vd~~------------------d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~  176 (433)
T PRK08134        125 RRFGIETTFVKPG------------------DIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAH  176 (433)
T ss_pred             hhCCeEEEEECCC------------------CHHHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHH
Confidence            3478888888863                  578999999999999999999999999999999999874

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=98.46  E-value=2.6e-07  Score=65.68  Aligned_cols=57  Identities=26%  Similarity=0.462  Sum_probs=46.9

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEEEEe-CCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLIILN-TPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~-~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.||++.++              +|+++|++.+.. ++|+++++ +-|||||.+|+.+..++|++
T Consensus       196 ~~~~g~~~~~vp~d~~G--------------~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~  254 (459)
T COG1167         196 LEALGARVIPVPVDEDG--------------IDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLA  254 (459)
T ss_pred             HHHcCCcEEecCCCCCC--------------CCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHH
Confidence            46789999999998654              899999999864 67886655 55999999999999888763

>PRK10534 L-threonine aldolase; Provisional

Probab=98.45  E-value=4.5e-07  Score=60.93  Aligned_cols=40  Identities=38%  Similarity=0.497  Sum_probs=34.8

Q ss_pred             CceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790           30 DFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus        30 ~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +|.+|+++|++++.+      ++++|++|||+|  |.+++.+++.+|+
T Consensus       108 ~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~~--G~v~~~~~l~~i~  153 (333)
T PRK10534        108 DGTLPLDKVAAKIKPDDIHFARTRLLSLENTHN--GKVLPREYLKQAW  153 (333)
T ss_pred             CCCCCHHHHHHhhcccCcCcccceEEEEecCCC--CeecCHHHHHHHH
Confidence            788999999998865      589999998775  9999999998765

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=98.44  E-value=4.6e-07  Score=62.60  Aligned_cols=59  Identities=19%  Similarity=0.305  Sum_probs=49.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-------CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-------SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-------~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++.+.+.           ++.+|++++++++.       +++++|++++|+||||.+.+.++|.++++
T Consensus       120 ~~~G~~~~~v~~~~~~-----------~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~  185 (387)
T PRK09331        120 ERAGLNVREVPKTGYP-----------EYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAH  185 (387)
T ss_pred             HHcCCEEEEEeCccCc-----------CCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHH
Confidence            5679999999984221           67789999999875       26899999999999999999999998874

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=98.43  E-value=5e-07  Score=62.19  Aligned_cols=51  Identities=29%  Similarity=0.450  Sum_probs=43.1

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..|+++.+++.+                  |++++++++++++|+|++++|+||+|.+.+.++|.++++
T Consensus       102 ~~g~~~~~v~~~------------------d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~  152 (369)
T cd00614         102 KLGIEVTFVDPD------------------DPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAH  152 (369)
T ss_pred             hcCeEEEEeCCC------------------CHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHH
Confidence            457777777643                  478899999888999999999999999999999998874

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PLN02509 cystathionine beta-lyase

Probab=98.42  E-value=3.5e-07  Score=65.45  Aligned_cols=51  Identities=22%  Similarity=0.339  Sum_probs=43.2

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..|+++++++..                  |++++++++.+++|+|++++|+||+|.+.+.++|.++++
T Consensus       194 ~~G~~v~~vd~~------------------d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk  244 (464)
T PLN02509        194 RSGVVVKRVNTT------------------NLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAH  244 (464)
T ss_pred             HCCeEEEEeCCC------------------CHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHH
Confidence            467777777532                  578899999889999999999999999999999988873

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=98.41  E-value=7.4e-07  Score=59.58  Aligned_cols=62  Identities=15%  Similarity=0.284  Sum_probs=47.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc--CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS--SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ...|+++++++......       ..-.+.+|++++++++.  +++|++++++| ||+|.+++.++|.++|+
T Consensus       117 ~~~g~~~~~v~~~~~~~-------~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~  180 (294)
T cd00615         117 VLSGAVPVYLKPERNPY-------YGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAH  180 (294)
T ss_pred             HHCCCEEEEecCccCcc-------cCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHH
Confidence            45688999988764320       00013689999999985  46899999999 79999999999998874

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>cd00609 AAT_like Aspartate aminotransferase family

Probab=98.40  E-value=7.6e-07  Score=58.92  Aligned_cols=59  Identities=41%  Similarity=0.642  Sum_probs=45.1

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|+.++.+++...+           .+..+.+.++....+++++|++++|+||||.+++.+++.+|+
T Consensus       100 ~~~~~~~~~~i~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~  158 (350)
T cd00609         100 ARLAGAEVVPVPLDEEG-----------GFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELA  158 (350)
T ss_pred             HHHCCCEEEEEeccccc-----------CCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHHHH
Confidence            35678899999987642           333333666666778899999999999999999999888543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=98.39  E-value=5.9e-07  Score=64.12  Aligned_cols=55  Identities=25%  Similarity=0.306  Sum_probs=46.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccC-CCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKV-FTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~l~   71 (72)
                      +..|++++.++++.             +|.+|+++|++++.+++++|++++|+ |||.. .+.++|.+++
T Consensus       179 ~~~G~~vv~v~~~~-------------~~~~D~e~L~~~i~~~t~~V~v~~Pn-~tG~~~~dl~eI~~~a  234 (481)
T PRK04366        179 AMAGFKVVEIPSNE-------------DGLVDLEALKAAVGEDTAALMLTNPN-TLGLFERNILEIAEIV  234 (481)
T ss_pred             HHcCCEEEEeecCC-------------CCCcCHHHHHhhcccCCeEEEEeCCC-CccccchHHHHHHHHH
Confidence            46799999999864             67889999999998899999999998 99976 4677777765

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=98.39  E-value=5e-07  Score=62.44  Aligned_cols=55  Identities=22%  Similarity=0.422  Sum_probs=48.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ...|++++.++++.+            +|.+|++++++++++++|+|+   |+||+|...+.+++.++|+
T Consensus        91 ~~~G~~~v~vd~~~~------------~~~~d~~~l~~~i~~~tkav~---~~~~~G~~~d~~~i~~~a~  145 (379)
T PRK11658         91 VLLGATPVMVDVDRD------------TLMVTPEAIEAAITPRTKAII---PVHYAGAPADLDAIRAIGE  145 (379)
T ss_pred             HHcCCEEEEEecCCC------------cCCcCHHHHHHhcccCCeEEE---EeCCCCCcCCHHHHHHHHH
Confidence            467999999999763            678999999999988999988   7788999999999998874

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=98.37  E-value=3.1e-07  Score=62.59  Aligned_cols=28  Identities=39%  Similarity=0.693  Sum_probs=25.5

Q ss_pred             CCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790           44 SRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus        44 ~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      .++++|+++|||||||.+++.+++++|+
T Consensus       147 ~~~~~v~~~~p~NPtG~~~~~~~~~~i~  174 (364)
T PRK07865        147 QRPALIWLNSPSNPTGRVLGVDHLRKVV  174 (364)
T ss_pred             ccceEEEEcCCCCCCCccCCHHHHHHHH
Confidence            5789999999999999999999988875

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=98.37  E-value=7.9e-07  Score=62.36  Aligned_cols=55  Identities=25%  Similarity=0.509  Sum_probs=50.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      -..|+++++|+++++            +|.+|++.++++++++||+|+   |.+-.|...+.+.|.+|++
T Consensus        92 ~~~Ga~PVFvDid~~------------T~nid~~~ie~aIt~~tKAIi---pVhl~G~~~dm~~i~~la~  146 (374)
T COG0399          92 LLVGAKPVFVDIDPD------------TLNIDPDLIEAAITPRTKAII---PVHLAGQPCDMDAIMALAK  146 (374)
T ss_pred             HHcCCeEEEEecCCc------------ccCCCHHHHHHHcccCCeEEE---EehhccCCCCHHHHHHHHH
Confidence            357999999999985            899999999999999999999   9999999999999999974

>PRK09028 cystathionine beta-lyase; Provisional

Probab=98.37  E-value=6e-07  Score=63.04  Aligned_cols=39  Identities=21%  Similarity=0.195  Sum_probs=34.5

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +.+.+++++.++||+|++++|+||||.+.+.++|.++++
T Consensus       135 ~~e~l~~~l~~~TklV~lespsNPtg~v~dl~~I~~la~  173 (394)
T PRK09028        135 IGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAH  173 (394)
T ss_pred             CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHH
Confidence            347788888889999999999999999999999988863

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=98.32  E-value=8.5e-07  Score=59.40  Aligned_cols=57  Identities=12%  Similarity=0.087  Sum_probs=47.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC--CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS--RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~--~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|++++++.++.  +++++++++++||||.+.+.++|.++++
T Consensus        94 ~~~g~~~~~i~~~~-------------~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~  152 (355)
T TIGR03301        94 EYLGIPHTDLNFSE-------------YEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVAR  152 (355)
T ss_pred             HHcCCceEEEecCC-------------CCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHH
Confidence            45788899998764             566899999998853  4567888999999999999999998873

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.32  E-value=1.4e-06  Score=61.79  Aligned_cols=53  Identities=17%  Similarity=0.134  Sum_probs=44.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++++++ +.                .|++++++++++++++|++.+|+||+|.+.+.++|.++++
T Consensus       130 ~~~Gi~v~~vd-d~----------------~d~e~l~~ai~~~tklV~ie~~sNp~G~v~Dl~~I~~la~  182 (436)
T PRK07812        130 PKLGIEVSFVE-DP----------------DDLDAWRAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAH  182 (436)
T ss_pred             hcCeEEEEEEC-CC----------------CCHHHHHHhCCCCCeEEEEECCCCCCCeecCHHHHHHHHH
Confidence            34677777775 22                1789999999989999999999999999999999999874

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=98.32  E-value=1.1e-06  Score=59.75  Aligned_cols=58  Identities=17%  Similarity=0.084  Sum_probs=48.3

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC--CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS--RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~--~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.++++.             ++.+|++.+++++..  +++++++++++||||..++.++|.++++
T Consensus        97 a~~~g~~~~~v~~~~-------------~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~  156 (363)
T TIGR02326        97 AEYLGIPHHVVDTGE-------------VEPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAH  156 (363)
T ss_pred             HHHcCCceEEEeCCC-------------CCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHH
Confidence            356789999999875             456799999998864  4678899999999999999999998873

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK07050 cystathionine beta-lyase; Provisional

Probab=98.31  E-value=1.1e-06  Score=61.28  Aligned_cols=52  Identities=17%  Similarity=0.115  Sum_probs=42.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +.+|+++++++..                  +.+.+++++.+++|+|++++|+||+|.+.+.++|.++++
T Consensus       126 ~~~Gi~v~~vd~~------------------~~~~l~~~i~~~tklV~le~p~Np~~~~~di~~I~~ia~  177 (394)
T PRK07050        126 RDFGITVRFYDPL------------------IGAGIADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAAR  177 (394)
T ss_pred             HhcCeEEEEECCC------------------CHHHHHHhcCCCCeEEEEECCCCCCccHhhHHHHHHHHH
Confidence            4567888877642                  236788888889999999999999999999999988763

>PRK05967 cystathionine beta-lyase; Provisional

Probab=98.31  E-value=7.7e-07  Score=62.56  Aligned_cols=52  Identities=13%  Similarity=0.066  Sum_probs=43.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +.+|+++.+++..                  +.+.++++++++||+|++++|+||++.+.+.++|.++|+
T Consensus       125 ~~~Gi~v~~vd~~------------------~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~  176 (395)
T PRK05967        125 KRLGVEVEYYDPE------------------IGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAH  176 (395)
T ss_pred             HhcCeEEEEeCCC------------------CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHH
Confidence            5678888887543                  247789999889999999999999999999999988873

>PRK08114 cystathionine beta-lyase; Provisional

Probab=98.27  E-value=1.4e-06  Score=61.23  Aligned_cols=52  Identities=13%  Similarity=0.175  Sum_probs=44.7

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +.+|+++.+++..                  |.+.++++++++||+|++.+|+||+|.+.+.+++.++++
T Consensus       123 ~~~Gi~v~~vd~~------------------d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~  174 (395)
T PRK08114        123 SKLGVTTTWFDPL------------------IGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVR  174 (395)
T ss_pred             HhcCcEEEEECCC------------------CHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHH
Confidence            4568888887743                  568899999889999999999999999999999999874

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=98.26  E-value=9.8e-07  Score=62.34  Aligned_cols=55  Identities=25%  Similarity=0.332  Sum_probs=38.7

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc--CCccEEEEeCC--CCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS--SRTKLIILNTP--HNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~i~l~~P--~NPtG~~~~~~~l~~l~   71 (72)
                      ++.+|++.+.||+.+++              +|.|.+++.+.  +.+|.|| |-|  +||||.+|+.+.+++|+
T Consensus       141 ~E~~Giemi~VpM~~dG--------------PDmD~Ve~LV~~D~svKGiW-cVP~ySNPtG~tySde~vrrlA  199 (425)
T PF12897_consen  141 TEHFGIEMIPVPMTEDG--------------PDMDMVEELVAEDPSVKGIW-CVPKYSNPTGITYSDEVVRRLA  199 (425)
T ss_dssp             HHHCT-EEEEEEEETTE--------------E-HHHHHHHTHTSTTEEEEE-E-SSS-TTT-----HHHHHHHH
T ss_pred             HHhhCcEEEecCCCCCC--------------CCHHHHHHHHhcCCccceEE-eCCCccCCCCccCCHHHHHHHh
Confidence            57799999999999765              79999999983  5677776 556  99999999999999987

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=98.24  E-value=3.5e-06  Score=57.64  Aligned_cols=54  Identities=20%  Similarity=0.287  Sum_probs=45.3

Q ss_pred             CCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCH-HHHHHHhC
Q psy790            5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR-EELEVIAK   72 (72)
Q Consensus         5 ~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~-~~l~~l~~   72 (72)
                      .|++++.+++..             .+.+|++++++++.+++++|++++|+ |+|.+.+. ++|.++|+
T Consensus       132 ~g~~~~~v~~~~-------------~~~~d~~~l~~~i~~~t~~viv~~~~-~~G~~~~~l~~i~~la~  186 (398)
T cd00613         132 LGIEVVEVPSDE-------------GGTVDLEALKEEVSEEVAALMVQYPN-TLGVFEDLIKEIADIAH  186 (398)
T ss_pred             CCcEEEEeccCC-------------CCCcCHHHHHHhcCCCeEEEEEECCC-CCceecchHHHHHHHHH
Confidence            358888888764             45689999999998899999999985 99999886 88888874

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=98.24  E-value=1.6e-06  Score=59.70  Aligned_cols=56  Identities=14%  Similarity=0.288  Sum_probs=47.7

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +...|+++++++++++            +|.+|++++++++++++|+|+++   |++|...+.+++.++++
T Consensus        88 ~~~~G~~~v~~d~d~~------------~~~~d~~~le~~i~~~tk~i~~~---~~~G~~~~~~~i~~la~  143 (375)
T PRK11706         88 FVLRGAKIVFVDIRPD------------TMNIDETLIEAAITPKTRAIVPV---HYAGVACEMDTIMALAK  143 (375)
T ss_pred             HHHcCCEEEEEecCCC------------cCCcCHHHHHHhcCCCCeEEEEe---CCCCCccCHHHHHHHHH
Confidence            3567999999999863            68899999999998899999965   57999999999998873

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=98.22  E-value=1.7e-06  Score=60.23  Aligned_cols=40  Identities=30%  Similarity=0.364  Sum_probs=35.6

Q ss_pred             eCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           33 LDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        33 ~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++++++++++.+ ++|+|++++|+||||.+++.++|.++++
T Consensus       124 ~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~  164 (385)
T PRK08574        124 PSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAK  164 (385)
T ss_pred             CCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHH
Confidence            357889999987 8999999999999999999999988873

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=98.18  E-value=4.2e-06  Score=58.95  Aligned_cols=57  Identities=25%  Similarity=0.336  Sum_probs=52.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|.++.++|++.             +..+|+++|+++++++|.+|.+..-||-+|++.+.++|.++++
T Consensus       112 e~~g~~Vtyl~V~~-------------~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k  168 (386)
T COG1104         112 ERQGFEVTYLPVDS-------------NGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICK  168 (386)
T ss_pred             HhcCCeEEEeCCCC-------------CCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHH
Confidence            34689999999987             5679999999999999999999999999999999999999874

>PRK07505 hypothetical protein; Provisional

Probab=98.17  E-value=5.2e-06  Score=57.50  Aligned_cols=39  Identities=15%  Similarity=0.187  Sum_probs=35.3

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |++++++++.++++++++++|+||||.+++.+++.++|+
T Consensus       168 d~~~l~~~~~~~~~~~vl~~p~~~~G~~~~~~~i~~l~~  206 (402)
T PRK07505        168 DLDALEDICKTNKTVAYVADGVYSMGGIAPVKELLRLQE  206 (402)
T ss_pred             CHHHHHHHHhcCCCEEEEEecccccCCcCCHHHHHHHHH
Confidence            688899888777899999999999999999999999874

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.14  E-value=6.4e-06  Score=58.53  Aligned_cols=53  Identities=21%  Similarity=0.283  Sum_probs=45.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++++++ ++             .   |++++++++++++|+|++.+|.||+|.+.+.++|.++|+
T Consensus       130 ~~~Gi~v~~vd-~~-------------~---d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~  182 (437)
T PRK05613        130 NRLGIEVTFVE-NP-------------D---DPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAH  182 (437)
T ss_pred             HhcCeEEEEEC-CC-------------C---CHHHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHH
Confidence            45788999888 32             1   689999999999999999999999999999999999874

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=98.13  E-value=5.1e-06  Score=57.85  Aligned_cols=37  Identities=14%  Similarity=0.245  Sum_probs=34.1

Q ss_pred             HHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           36 AELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        36 ~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +.+++++++++|+|++++|+||+|.+.+.++|.++|+
T Consensus       126 e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~  162 (377)
T TIGR01324       126 EDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAAR  162 (377)
T ss_pred             HHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHH
Confidence            7788889889999999999999999999999998874

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=98.12  E-value=5.3e-06  Score=57.01  Aligned_cols=55  Identities=22%  Similarity=0.318  Sum_probs=46.8

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc----CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS----SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++++++++++            ++.+|+++++++++    +++++|+   |+|++|...+.+++.++|+
T Consensus        87 ~~~G~~~~~~~~~~~------------~~~~d~~~l~~~i~~~~~~~t~~v~---~~~~~G~~~~~~~i~~l~~  145 (380)
T TIGR03588        87 LYCGAKVDFVDIDPD------------TGNIDEDALEKKLAAAKGKLPKAIV---PVDFAGKSVDMQAIAALAK  145 (380)
T ss_pred             HHcCCEEEEEecCCC------------cCCcCHHHHHHHhhcccCCCceEEE---EeCCCCccCCHHHHHHHHH
Confidence            467999999999763            67799999999998    7899998   5567999999999998873

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=98.09  E-value=2.7e-06  Score=58.42  Aligned_cols=55  Identities=24%  Similarity=0.475  Sum_probs=43.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ...|+++++++++++            +|.+|++.+++++++++|+|+   +.+..|...+.+++.++|+
T Consensus        83 ~~~G~~pv~~Di~~~------------~~~id~~~~~~~i~~~t~ai~---~~h~~G~~~d~~~i~~~~~  137 (363)
T PF01041_consen   83 LWAGAEPVFVDIDPE------------TLNIDPEALEKAITPKTKAIL---VVHLFGNPADMDAIRAIAR  137 (363)
T ss_dssp             HHTT-EEEEE-BETT------------TSSB-HHHHHHHHHTTEEEEE---EE-GGGB---HHHHHHHHH
T ss_pred             HHhccEEEEEeccCC------------cCCcCHHHHHHHhccCccEEE---EecCCCCcccHHHHHHHHH
Confidence            468999999999975            899999999999999999999   7778999999999998873

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=98.09  E-value=6.9e-06  Score=57.68  Aligned_cols=52  Identities=29%  Similarity=0.379  Sum_probs=42.7

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..+|+++.+++..                  |++++++++++++++|++.+|.||+..+.+.+.+.++++
T Consensus       116 ~~~gv~v~~~d~~------------------d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~  167 (386)
T PF01053_consen  116 PRFGVEVTFVDPT------------------DLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAK  167 (386)
T ss_dssp             HHTTSEEEEESTT------------------SHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHH
T ss_pred             cccCcEEEEeCch------------------hHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHH
Confidence            4478888888654                  689999999999999999999999999999999999873

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>KOG0053|consensus

Probab=98.08  E-value=7.1e-06  Score=58.15  Aligned_cols=51  Identities=29%  Similarity=0.421  Sum_probs=43.5

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      .+|++..+++++                  +++.+++++.+++++||+.+|.||++.+.|++.+.++++
T Consensus       139 ~~gie~~~vd~~------------------~~~~~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~  189 (409)
T KOG0053|consen  139 KFGGEGDFVDVD------------------DLKKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAH  189 (409)
T ss_pred             HhCceeeeechh------------------hHHHHHHhhccCceEEEEECCCCCccccccHHHHHHHHh
Confidence            456666666655                  477888999889999999999999999999999999875

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=98.07  E-value=4.1e-06  Score=57.15  Aligned_cols=28  Identities=43%  Similarity=0.708  Sum_probs=25.4

Q ss_pred             CCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790           44 SRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus        44 ~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      .++++|++++|+||||.+++.+++.+|+
T Consensus       141 ~~~~~v~~~~p~NPtG~~~~~~~~~~i~  168 (357)
T TIGR03539       141 VGPDLIWLNSPGNPTGRVLSVDELRAIV  168 (357)
T ss_pred             cCccEEEEeCCCCCcCccCCHHHHHHHH
Confidence            4789999999999999999999988775

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=98.05  E-value=1.2e-05  Score=48.16  Aligned_cols=59  Identities=31%  Similarity=0.383  Sum_probs=43.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh-cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF-SSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++.+...           .+..+.+.+++.. .++++++++++|+||+|..++.+++.++++
T Consensus        60 ~~~g~~~~~v~~~~~~-----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~  119 (170)
T cd01494          60 ELAGAKPVPVPVDDAG-----------YGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAK  119 (170)
T ss_pred             HhcCCEEEEeccCCCC-----------ccchhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHH
Confidence            5678899999887532           2333333554443 567899999999999999999999988763

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=98.02  E-value=1.2e-05  Score=57.04  Aligned_cols=58  Identities=10%  Similarity=0.060  Sum_probs=51.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++..            ++.+|+++|++++.+++.+|+++..+|.||.+.+.++|.++++
T Consensus       156 ~~lg~~v~~i~~d~~------------~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idpi~~I~~i~~  213 (431)
T TIGR01788       156 RYFDVELREVPMDPG------------RYVIDPEQVVEAVDENTIGVVCILGTTYTGEYEDVKALNDALD  213 (431)
T ss_pred             HHcCceeEEEecCCC------------ceeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCCHHHHHHHHH
Confidence            456889999999762            4679999999999989999999999999999999999999874

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK07582 cystathionine gamma-lyase; Validated

Probab=98.00  E-value=8.8e-06  Score=56.24  Aligned_cols=49  Identities=20%  Similarity=0.147  Sum_probs=38.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++++++..             .+    +    .+.+++++|++++|+||+|.+.+.++|.++++
T Consensus       111 ~~~G~~v~~v~~~~-------------~~----~----~~~~~t~lV~le~p~NPtg~v~di~~I~~~a~  159 (366)
T PRK07582        111 APLGVTVREAPTAG-------------MA----E----AALAGADLVLAETPSNPGLDVCDLAALAAAAH  159 (366)
T ss_pred             hcCeEEEEEECCCC-------------hH----H----HhccCceEEEEECCCCCCCCccCHHHHHHHHH
Confidence            34688888888753             11    1    22357999999999999999999999998874

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=98.00  E-value=9.5e-06  Score=56.26  Aligned_cols=30  Identities=23%  Similarity=0.255  Sum_probs=26.9

Q ss_pred             cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           43 SSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        43 ~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      .+++++|++++|+||||.+++.+++.++++
T Consensus       176 ~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~  205 (410)
T PRK13392        176 PDRPKLIAFESVYSMDGDIAPIEAICDLAD  205 (410)
T ss_pred             CCCCEEEEEeCCCCCCcccccHHHHHHHHH
Confidence            357899999999999999999999998873

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=97.99  E-value=2.1e-05  Score=52.84  Aligned_cols=55  Identities=25%  Similarity=0.472  Sum_probs=46.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++++++++..            +|.+|++.+++.+.+++++|+++   |++|.+.+.+++.++|+
T Consensus        76 ~~~g~~~~~~~~~~~------------~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~~~~i~~l~~  130 (352)
T cd00616          76 LLLGATPVFVDIDPD------------TYNIDPELIEAAITPRTKAIIPV---HLYGNPADMDAIMAIAK  130 (352)
T ss_pred             HHcCCeEEEEecCCC------------cCCcCHHHHHHhcCcCCeEEEEE---CCCCCcCCHHHHHHHHH
Confidence            457899999998752            67889999999998889999976   47999999999998873

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=97.95  E-value=2e-05  Score=55.70  Aligned_cols=53  Identities=25%  Similarity=0.286  Sum_probs=47.7

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++.+|+++.+++-+                  |++.++++++++||+|++.+-.||-+.+.+.+.+.++|+
T Consensus       122 l~~~Gi~v~fvd~~------------------d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh  174 (426)
T COG2873         122 LKRLGIEVRFVDPD------------------DPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAH  174 (426)
T ss_pred             HHhcCcEEEEeCCC------------------CHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHH
Confidence            35789999998865                  589999999999999999999999999999999999874

>KOG1549|consensus

Probab=97.90  E-value=2.6e-05  Score=55.58  Aligned_cols=57  Identities=23%  Similarity=0.381  Sum_probs=51.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|.+++++|+..             ++..|++.+++.++++||++.+.+-+|-+|.+++.++|.++|+
T Consensus       152 ~~~g~~Vt~lpv~~-------------~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr  208 (428)
T KOG1549|consen  152 QEEGLEVTYLPVED-------------SGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICR  208 (428)
T ss_pred             HhcCeEEEEeccCc-------------cccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhC
Confidence            45678999999984             6678999999999999999999999999999999999998874

>PRK02769 histidine decarboxylase; Provisional

Probab=97.89  E-value=1.6e-05  Score=55.50  Aligned_cols=57  Identities=19%  Similarity=0.126  Sum_probs=48.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCC---ccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSR---TKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +.+|.+.+.|+..+             ++.+|+++|++++.++   +.+|+++.++|+||.+.+.++|.++++
T Consensus       128 ~~lg~~~~~V~~~~-------------~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~  187 (380)
T PRK02769        128 RLLRIKSRVITSLP-------------NGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILK  187 (380)
T ss_pred             HHcCCCCceeccCC-------------CCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHH
Confidence            45677777788764             5678999999998765   899999999999999999999998873

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=97.87  E-value=3.1e-05  Score=59.91  Aligned_cols=57  Identities=11%  Similarity=0.028  Sum_probs=49.7

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC---CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|+++|++++++   ++++|++++|+|-+|...+.++|.++++
T Consensus       634 ~~~G~~vv~v~~d~-------------~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah  693 (993)
T PLN02414        634 AMCGMKIVVVGTDA-------------KGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIH  693 (993)
T ss_pred             HHCCCEEEEeccCC-------------CCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHH
Confidence            34689999999975             557899999999974   7899999999999999999999998873

>PRK07179 hypothetical protein; Provisional

Probab=97.87  E-value=3e-05  Score=53.70  Aligned_cols=40  Identities=15%  Similarity=0.247  Sum_probs=34.8

Q ss_pred             eCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           33 LDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        33 ~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      .|++.+++++.+ .+++|++++|+||||.+++.++|.++++
T Consensus       168 ~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~l~~  208 (407)
T PRK07179        168 NDVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAE  208 (407)
T ss_pred             CCHHHHHHHHHhcCCeEEEECCCCCCCCccccHHHHHHHHH
Confidence            378999988865 4788999999999999999999998874

>TIGR01814 kynureninase kynureninase

Probab=97.85  E-value=2.9e-05  Score=53.84  Aligned_cols=43  Identities=14%  Similarity=0.221  Sum_probs=36.9

Q ss_pred             CceeCHHHHHhhh---cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           30 DFKLDPAELESKF---SSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        30 ~~~~d~~~l~~~~---~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++.++++.+++.+   .++|++|++++++|.||.+++.++|.++|+
T Consensus       153 ~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~  198 (406)
T TIGR01814       153 EETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAH  198 (406)
T ss_pred             CCccCHHHHHHHHHhcCCCeEEEEEeccccccceecCHHHHHHHHH
Confidence            4557888888776   468999999999999999999999999874

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=97.83  E-value=3.7e-05  Score=54.39  Aligned_cols=52  Identities=31%  Similarity=0.405  Sum_probs=41.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +.+|+++.+++..                  +.+++++++. ++||+|++.+|+||+..+.|.+++.++++
T Consensus       124 ~~~gi~~~~~d~~------------------~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~  176 (396)
T COG0626         124 QKFGVEVTFVDPG------------------DDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAK  176 (396)
T ss_pred             HhcCeEEEEECCC------------------ChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHH
Confidence            4577777777654                  3455666665 59999999999999999999999999874

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=97.83  E-value=4.2e-05  Score=54.26  Aligned_cols=55  Identities=24%  Similarity=0.478  Sum_probs=46.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ...|+++++++++..            +|.+|++.+++++++++|+|++++   ++|...+.++|.++|+
T Consensus       129 ~~~G~~pv~vdvd~~------------~~~id~~~le~~i~~~tkaVi~~~---~~G~p~dl~~I~~la~  183 (438)
T PRK15407        129 IQNGLVPVFVDVELP------------TYNIDASLLEAAVSPKTKAIMIAH---TLGNPFDLAAVKAFCD  183 (438)
T ss_pred             HHcCCEEEEEecCCC------------cCCcCHHHHHHHcCcCCeEEEEeC---CCCChhhHHHHHHHHH
Confidence            457899999998753            788999999999988999999776   4777889999988873

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=97.78  E-value=5e-05  Score=50.85  Aligned_cols=39  Identities=28%  Similarity=0.253  Sum_probs=31.6

Q ss_pred             CHHHHHhhhc-----CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFS-----SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~-----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |.+.+++.+.     .+++++++++|+||||...+.++|.++|+
T Consensus       116 ~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~  159 (349)
T cd06454         116 DMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAK  159 (349)
T ss_pred             CHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHHHHH
Confidence            5566776664     35688999999999999999999998874

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK05968 hypothetical protein; Provisional

Probab=97.77  E-value=4.2e-05  Score=53.34  Aligned_cols=51  Identities=20%  Similarity=0.244  Sum_probs=41.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++++++..                  |++++++++ +++|+|++++|+||++.+.+.+++.++++
T Consensus       124 ~~~G~~v~~vd~~------------------d~~~l~~~i-~~tklV~ie~pt~~~~~~~dl~~i~~la~  174 (389)
T PRK05968        124 KRMGVEVDYVDGR------------------DEEAVAKAL-PGAKLLYLESPTSWVFELQDVAALAALAK  174 (389)
T ss_pred             HHcCceEEEeCCC------------------CHHHHHHhc-ccCCEEEEECCCCCCCcHHHHHHHHHHHH
Confidence            3467777777643                  578888887 57999999999999999999999888763

>PLN03032 serine decarboxylase; Provisional

Probab=97.76  E-value=3.4e-05  Score=54.01  Aligned_cols=57  Identities=16%  Similarity=0.165  Sum_probs=48.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC---CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +.+|.+++.||++.             ++.+|+++|++++.+   ++.+|+++..+|+||.+-+.++|.++++
T Consensus       129 ~~lg~~~~~V~~d~-------------~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~i~~  188 (374)
T PLN03032        129 RMYRMEAVKVPTLP-------------SGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILK  188 (374)
T ss_pred             HHcCCCCeEeeeCC-------------CCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHHHHH
Confidence            45677788888875             667999999999976   4678888899999999999999999873

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=97.74  E-value=6.2e-05  Score=58.01  Aligned_cols=56  Identities=16%  Similarity=0.169  Sum_probs=47.8

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc---CCccEEEEeCCCCccccCCC-HHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS---SRTKLIILNTPHNPLGKVFT-REELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~-~~~l~~l~~   72 (72)
                      +..|++++.|+++.             ++.+|+++|++++.   .++++|++++|+| +|.+-+ .++|.++++
T Consensus       596 ~~~G~~Vv~V~~d~-------------~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah  655 (939)
T TIGR00461       596 AMAGMQVVPVNCDQ-------------DGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHACDIVH  655 (939)
T ss_pred             HHCCCEEEEeccCC-------------CCCcCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHHHHHH
Confidence            46789999999875             56799999999996   4899999999999 899887 888888763

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=97.65  E-value=7e-05  Score=51.12  Aligned_cols=57  Identities=25%  Similarity=0.307  Sum_probs=49.8

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++.+.             +..+|++++++.+.+++++|++++-+|-||..++.++|.++++
T Consensus       110 ~~~g~~v~~i~~~~-------------~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~~I~~~~~  166 (371)
T PF00266_consen  110 KRKGAEVRVIPADP-------------GGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIEEIAKLAH  166 (371)
T ss_dssp             HHTTEEEEEEEEGT-------------TSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHHHHHHHHH
T ss_pred             ccchhhhccccccc-------------cchhhhhhhhhhhccccceEEeecccccccEEeeeceehhhhh
Confidence            35789999999875             3457899999999999999999999999999999999998863

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=97.64  E-value=8e-05  Score=51.38  Aligned_cols=39  Identities=13%  Similarity=0.219  Sum_probs=33.3

Q ss_pred             eCHHHHHhhhcCCccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790           33 LDPAELESKFSSRTKLIILNTPHNPLGKVFT----REELEVIA   71 (72)
Q Consensus        33 ~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~----~~~l~~l~   71 (72)
                      .|++.+++.+.+++++|++++|+||+|.+++    .+++.++|
T Consensus       175 ~d~~~le~~i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~  217 (401)
T PRK00854        175 GDAEALEAAITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELC  217 (401)
T ss_pred             CCHHHHHHHhCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHH
Confidence            4789999999889999999999999999998    55555555

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=97.63  E-value=0.00021  Score=49.15  Aligned_cols=59  Identities=20%  Similarity=0.200  Sum_probs=44.2

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|+++..+++..+.          .+|.+|++++++++. ++++++++++|+||  ...+.++|.++++
T Consensus       127 ~~~~g~~~~~~~~~~~~----------~~~~id~~~l~~~i~~~~~~~v~~~~~~~~--~~~~~~~I~~l~~  186 (402)
T cd00378         127 VSASGKLFESVPYGVDP----------ETGLIDYDALEKMALEFKPKLIVAGASAYP--RPIDFKRFREIAD  186 (402)
T ss_pred             ccccceeEEEecCCcCc----------ccCCcCHHHHHHHHHhCCCCEEEecCcccC--CCcCHHHHHHHHH
Confidence            34467777777765421          157899999999984 68999999999886  5678888888863

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=97.61  E-value=0.00016  Score=49.97  Aligned_cols=39  Identities=28%  Similarity=0.332  Sum_probs=31.7

Q ss_pred             CHHHHHhhhc----CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFS----SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |.+.+++.+.    .++++|++++|+||+|.+.+.++|.++|+
T Consensus       162 d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~  204 (402)
T TIGR01821       162 DVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEICDLAD  204 (402)
T ss_pred             CHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHH
Confidence            4566666553    25789999999999999999999999874

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK04311 selenocysteine synthase; Provisional

Probab=97.58  E-value=0.00021  Score=51.31  Aligned_cols=55  Identities=18%  Similarity=0.196  Sum_probs=44.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCcc----ccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPL----GKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPt----G~~~~~~~l~~l~~   72 (72)
                      +..|+++++++....               .++++++++++++|++|++.+++||+    +...+.+++.++++
T Consensus       189 ~~~G~~l~~v~~~~~---------------t~~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak  247 (464)
T PRK04311        189 RQAGARLVEVGTTNR---------------THLRDYEQAINENTALLLKVHTSNYRIEGFTKEVSLAELAALGK  247 (464)
T ss_pred             HHCCcEEEEECCCCC---------------CCHHHHHHhcCccCeEEEEEcCCCccccccCCcCCHHHHHHHHH
Confidence            456888888876431               36889999999999999999999993    46789999998874

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=97.51  E-value=0.00026  Score=50.03  Aligned_cols=60  Identities=27%  Similarity=0.282  Sum_probs=43.6

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC--CccEEEEe-CCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS--RTKLIILN-TPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~--~~~~i~l~-~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|.++...|.-...           +-.+|++.+...+..  ...+|+|. ..|||||.-++.+++.+|++
T Consensus       137 f~~aGl~v~~Y~Yyd~~-----------~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~  199 (396)
T COG1448         137 FEAAGLEVETYPYYDAE-----------TKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELAD  199 (396)
T ss_pred             HHhcCCceeeeeccccc-----------cccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHH
Confidence            35678899888876543           445888888777743  33444444 34999999999999998863

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=97.44  E-value=0.00028  Score=50.56  Aligned_cols=61  Identities=20%  Similarity=0.151  Sum_probs=46.6

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC---CccEEEEeCCC-CccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---RTKLIILNTPH-NPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~l~~P~-NPtG~~~~~~~l~~l~~   72 (72)
                      +...|+++++++...+.          ++|.+|++++++++.+   ++.++++++|+ .++|...+.++|.++|+
T Consensus       168 i~~~G~~pv~Vd~~~d~----------~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~  232 (444)
T TIGR03531       168 ISTAGFEPRVIETVLDG----------DELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICA  232 (444)
T ss_pred             HHHcCCeEEEeeeeecC----------cCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHH
Confidence            35689999999963211          1799999999999975   56778888885 55668888999888873

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=97.43  E-value=0.00044  Score=49.57  Aligned_cols=55  Identities=16%  Similarity=0.234  Sum_probs=45.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCcc--c--cCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPL--G--KVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPt--G--~~~~~~~l~~l~~   72 (72)
                      +..|+++++++....               .++++++++++++|++|++.+++|++  |  .+.+.+++.++|+
T Consensus       184 ~~~G~~~~~v~~~~~---------------~~l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~  242 (454)
T TIGR00474       184 EQSGAKLVEVGTTNR---------------THLKDYEDAITENTALLLKVHTSNYRIVGFTEEVSIAELVALGR  242 (454)
T ss_pred             HHcCCEEEEeCCCCC---------------CCHHHHHHhcCcCCEEEEEEccCcccccCCCCCCCHHHHHHHHH
Confidence            456888888876431               36899999999999999999999995  5  5889999998874

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK06434 cystathionine gamma-lyase; Validated

Probab=97.43  E-value=0.00023  Score=49.96  Aligned_cols=51  Identities=22%  Similarity=0.219  Sum_probs=40.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..+|+++++++++..+           .+.++        ..++|+|++.+|.|||+.+.+.++|.++++
T Consensus       125 ~~~Gi~v~fvd~~~~~-----------~~~l~--------~~~tklv~~e~~snpt~~v~Di~~I~~la~  175 (384)
T PRK06434        125 KTLGIHVDYIDTDRLN-----------SLDFD--------PSNYDLIYAESITNPTLKVPDIKNVSSFCH  175 (384)
T ss_pred             HhcCcEEEEECCCChh-----------heeec--------CCCeeEEEEEcCCCCCceeecHHHHHHHHH
Confidence            4578999999987522           33322        136899999999999999999999999874

>KOG0634|consensus

Probab=97.41  E-value=0.00046  Score=49.56  Aligned_cols=56  Identities=27%  Similarity=0.409  Sum_probs=41.2

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC---C----c-cEEEEeCC--CCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---R----T-KLIILNTP--HNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~----~-~~i~l~~P--~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.|+++..              .++++.|++.+..   .    . .-|+.+-|  +||||..++.+..++|.
T Consensus       165 ~~a~gv~~ipv~md~~--------------Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy  230 (472)
T KOG0634|consen  165 MEALGVKIIPVKMDQD--------------GIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIY  230 (472)
T ss_pred             ccccCceEEeccccCC--------------CCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHH
Confidence            4678889999988754              3788888887631   1    1 23556666  89999999999888764

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=97.40  E-value=0.00036  Score=46.72  Aligned_cols=39  Identities=26%  Similarity=0.324  Sum_probs=32.9

Q ss_pred             CHHHHHhhhcC----CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFSS----RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~~----~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |++.+++.+..    ++++|++++++||||...+.++|.++|+
T Consensus       131 d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~  173 (360)
T TIGR00858       131 DVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAE  173 (360)
T ss_pred             CHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcCHHHHHHHHH
Confidence            67888887753    4788999999999999999999999874

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=97.37  E-value=0.0003  Score=47.75  Aligned_cols=56  Identities=32%  Similarity=0.514  Sum_probs=42.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC------CccEEEEeCCCCcc-ccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPL-GKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPt-G~~~~~~~l~~l~   71 (72)
                      ...|++++.++...             +..+++++|++.+..      ++++|+|++|+|.. |++++.++|++|.
T Consensus        89 ~~~G~~~~~l~~~~-------------~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~  151 (290)
T PF01212_consen   89 ELSGAKLIPLPSDD-------------DGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAIS  151 (290)
T ss_dssp             HHTTCEEEEEBECT-------------GTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHH
T ss_pred             HhcCcEEEECCCcc-------------cCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHH
Confidence            34688888888764             367899999998843      57899999999985 8999999999885

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=97.35  E-value=0.0003  Score=48.15  Aligned_cols=40  Identities=25%  Similarity=0.302  Sum_probs=34.3

Q ss_pred             eCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           33 LDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        33 ~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      .|++++++++.+      ++++|++++++||||.+.+.++|.++|+
T Consensus       152 ~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~  197 (393)
T TIGR01822       152 NDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLAD  197 (393)
T ss_pred             CCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHH
Confidence            578888887753      6889999999999999999999998874

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK09064 5-aminolevulinate synthase; Validated

Probab=97.34  E-value=0.00033  Score=48.42  Aligned_cols=39  Identities=28%  Similarity=0.317  Sum_probs=32.4

Q ss_pred             CHHHHHhhhc----CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFS----SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |++.+++.+.    +++++|++++|+||+|.+.+.++|.++++
T Consensus       163 d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~  205 (407)
T PRK09064        163 DVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICDLAD  205 (407)
T ss_pred             CHHHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHHHHHHHH
Confidence            5566666653    46899999999999999999999999874

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=97.32  E-value=0.00037  Score=47.87  Aligned_cols=40  Identities=20%  Similarity=0.164  Sum_probs=32.9

Q ss_pred             eCHHHHHhhhc------CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           33 LDPAELESKFS------SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        33 ~d~~~l~~~~~------~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      .|++.+++.++      +.+++|++++++|++|.+.+.++|.++++
T Consensus       125 ~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~  170 (370)
T PRK05937        125 NDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSK  170 (370)
T ss_pred             CCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHH
Confidence            47888888775      23567788999999999999999999874

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=97.29  E-value=0.00062  Score=47.22  Aligned_cols=53  Identities=17%  Similarity=0.100  Sum_probs=40.8

Q ss_pred             CCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            6 GGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         6 g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |++++.++++.+            ++.+|+++++++++. ++|+|++++++|  |...+.++|.++++
T Consensus       137 g~~~~~~~~~~~------------~~~~d~~~l~~~i~~~~~k~v~~~~~~~--~~~~~~~~I~~la~  190 (416)
T PRK00011        137 LYNVVSYGVDEE------------TGLIDYDEVEKLALEHKPKLIIAGASAY--SRPIDFKRFREIAD  190 (416)
T ss_pred             eeeEeecCcCcc------------cCCcCHHHHHHHHHhcCCCEEEECCCcC--CCccCHHHHHHHHH
Confidence            567777777642            577999999999864 799999887655  46778999988873

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=97.29  E-value=0.00039  Score=48.20  Aligned_cols=38  Identities=11%  Similarity=0.183  Sum_probs=31.5

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCCH----HHHHHHh
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFTR----EELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~----~~l~~l~   71 (72)
                      |++++++.+.+++++|+++.|+||+|.+++.    +++.++|
T Consensus       175 d~~~l~~~i~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~  216 (396)
T PRK04073        175 DLEALKAAITPNTAAFLVEPIQGEAGINIPPEGFLKAARELC  216 (396)
T ss_pred             CHHHHHHhcccCeEEEEEcCccCCCCCccCCHHHHHHHHHHH
Confidence            6889999888889999999999999999984    4555555

>KOG1383|consensus

Probab=97.22  E-value=0.00064  Score=49.15  Aligned_cols=58  Identities=19%  Similarity=0.336  Sum_probs=52.5

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++.++++++.||+++.            +|.+|+.++.+.++++|.+++..-|+-|+|.+=+.+++.+++
T Consensus       187 a~yf~v~l~~V~~~~~------------~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~e~ve~l~~l~  244 (491)
T KOG1383|consen  187 ARYFEVELREVPLDEG------------DYRVDPGKVVRMIDENTIMLVGSLPNFPTGEIEDVEKLADLL  244 (491)
T ss_pred             HhhEEEEEEeeecccc------------ceEecHHHHHHHhccceEEEEEEcCCCCccchhhHHHHHHHH
Confidence            4667889999999973            899999999999999999999999999999999999888764

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=97.10  E-value=0.00082  Score=46.26  Aligned_cols=38  Identities=13%  Similarity=0.215  Sum_probs=31.9

Q ss_pred             CHHHHHhhhc-CCccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790           34 DPAELESKFS-SRTKLIILNTPHNPLGKVFT----REELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~----~~~l~~l~   71 (72)
                      |++++++.+. +++++|++..++||+|.+++    .++|.++|
T Consensus       166 d~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~  208 (400)
T PTZ00125        166 DVEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELC  208 (400)
T ss_pred             CHHHHHHHhCCCCeEEEEEcCccCCCCCccCCHHHHHHHHHHH
Confidence            7899999885 67899999999999999998    56666655

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=97.08  E-value=0.00078  Score=47.06  Aligned_cols=40  Identities=33%  Similarity=0.543  Sum_probs=33.0

Q ss_pred             CceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790           30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus        30 ~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      .|+.|++++.  +..++-+|+++-|.||||.+++.+++.+|.
T Consensus       166 KY~vDF~~l~--i~e~~g~ic~SRPtNPTGNVlTdeE~~kld  205 (417)
T COG3977         166 KYHVDFEHLH--IGESTGAICVSRPTNPTGNVLTDEELAKLD  205 (417)
T ss_pred             eeccCHHHcc--cccccceEEecCCCCCCCCcccHHHHHHHH
Confidence            3567776663  456789999999999999999999998874

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=97.08  E-value=0.0014  Score=45.52  Aligned_cols=39  Identities=33%  Similarity=0.462  Sum_probs=31.1

Q ss_pred             CHHHHHhhhc----CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFS----SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |++.+++.+.    +++++|++++++|++|.+.+.+++.++++
T Consensus       162 d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~  204 (406)
T PRK13393        162 DPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEICDVAE  204 (406)
T ss_pred             CHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhCHHHHHHHHH
Confidence            4555655543    35789999999999999999999998874

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=97.06  E-value=0.001  Score=45.94  Aligned_cols=38  Identities=18%  Similarity=0.175  Sum_probs=32.2

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFT----REELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~----~~~l~~l~   71 (72)
                      |++.+++.+.+++++|+++.++||+|.+++    .+++.++|
T Consensus       172 d~~~l~~~~~~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~  213 (398)
T PRK03244        172 DVDALAAAVDDDTAAVFLEPIQGEAGVVPPPAGYLAAAREIT  213 (398)
T ss_pred             CHHHHHHhhcCCeEEEEEecccCCCCCcCCCHHHHHHHHHHH
Confidence            788999888778999999999999999998    55666665

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=96.93  E-value=0.0015  Score=44.78  Aligned_cols=38  Identities=18%  Similarity=0.302  Sum_probs=32.7

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccc-cCCCHHHHHHHh
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLG-KVFTREELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG-~~~~~~~l~~l~   71 (72)
                      |++++++++.+++++|+++.++||+| .+++.+.+++|.
T Consensus       171 d~~~l~~~i~~~~~~vii~p~~~~~G~~~~~~~~l~~l~  209 (396)
T PRK02627        171 DIEALKAAITDKTAAVMLEPIQGEGGVNPADKEYLQALR  209 (396)
T ss_pred             CHHHHHHhcCCCeEEEEEecccCCCCCccCCHHHHHHHH
Confidence            78999999988899999999999999 688877776664

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=96.92  E-value=0.0022  Score=43.47  Aligned_cols=39  Identities=23%  Similarity=0.290  Sum_probs=31.0

Q ss_pred             CHHHHHhhhcC---CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFSS---RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~~---~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |++.+++.+..   .++++++.+++||+|...+.++|.++|+
T Consensus       154 d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~  195 (385)
T PRK05958        154 DVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVALAR  195 (385)
T ss_pred             CHHHHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHHHHHH
Confidence            67888888754   3556667788999999999999998874

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=96.91  E-value=0.0015  Score=44.55  Aligned_cols=40  Identities=23%  Similarity=0.240  Sum_probs=32.6

Q ss_pred             eCHHHHHhhhc----CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           33 LDPAELESKFS----SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        33 ~d~~~l~~~~~----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +|++++++.+.    +++++|++++++||||.+.+.++|.++|+
T Consensus       147 ~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~  190 (385)
T TIGR01825       147 ADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAE  190 (385)
T ss_pred             CCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHH
Confidence            46777776654    36889999999999999999999998874

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=96.79  E-value=0.004  Score=45.07  Aligned_cols=41  Identities=15%  Similarity=0.263  Sum_probs=36.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHN   56 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~N   56 (72)
                      .+.|.+++.|+++.             +..+|+++|++++..++.+++++|||-
T Consensus       175 am~G~~VV~V~~~~-------------~G~VDlddLk~k~~~~~AalMiTnPsT  215 (496)
T COG1003         175 AMAGFKVVVVKCDE-------------NGNVDLDDLRAKAEDNLAALMITNPST  215 (496)
T ss_pred             hhcCceEEEEecCC-------------CCCccHHHHHHHhccceeEEEeccCcc
Confidence            56799999999987             566899999999999999999999963

>PRK12566 glycine dehydrogenase; Provisional

Probab=96.77  E-value=0.0032  Score=48.93  Aligned_cols=56  Identities=16%  Similarity=0.142  Sum_probs=45.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc---CCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS---SRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ...|++++.++.+.             +..+|+++|++++.   .++.+|++.+|++-.+...+.++|.+++
T Consensus       609 ~~~GieVv~Vp~D~-------------~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~ia  667 (954)
T PRK12566        609 QMAGMRVVIVECDP-------------DGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVV  667 (954)
T ss_pred             HHCCCEEEEeccCC-------------CCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHH
Confidence            45789999999875             45689999999986   5788899999988877766788888776

>PLN02822 serine palmitoyltransferase

Probab=96.74  E-value=0.0015  Score=46.84  Aligned_cols=58  Identities=10%  Similarity=0.223  Sum_probs=39.7

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh--cCCc-cEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF--SSRT-KLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~-~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..++++++++.....           +|...++++++..  .+++ ++|+++.++|++|.+++.+++.++++
T Consensus       212 ls~~~~~~~~~nd~~-----------~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~  272 (481)
T PLN02822        212 LSRSTIVYFKHNDME-----------SLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKE  272 (481)
T ss_pred             HcCCeEEEECCCCHH-----------HHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHH
Confidence            456777777765422           4444444444332  1345 68999999999999999999998873

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=96.71  E-value=0.0034  Score=45.82  Aligned_cols=57  Identities=19%  Similarity=0.225  Sum_probs=43.9

Q ss_pred             ccCCC---eEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc----CCccEEEEe--CCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGG---VPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS----SRTKLIILN--TPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~---~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~i~l~--~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+   +++.||++.             ++.+|+++|++++.    .+++.++++  .-++.||.+-+.++|.++|+
T Consensus       227 ~~lglg~~~v~~vp~d~-------------~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~  292 (522)
T TIGR03799       227 DVLGIGRDNLIAIKTDA-------------NNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQ  292 (522)
T ss_pred             HHcCCCcccEEEEEeCC-------------CCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHH
Confidence            34555   788899875             67899999999885    456665555  45679999999999999874

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=96.70  E-value=0.003  Score=43.55  Aligned_cols=39  Identities=18%  Similarity=0.183  Sum_probs=33.6

Q ss_pred             eCHHHHHhhhcCCccEEEEeCCCCccc-cCCCHHHHHHHh
Q psy790           33 LDPAELESKFSSRTKLIILNTPHNPLG-KVFTREELEVIA   71 (72)
Q Consensus        33 ~d~~~l~~~~~~~~~~i~l~~P~NPtG-~~~~~~~l~~l~   71 (72)
                      .|++++++.+.+++++|+++.++||+| .+++.+.+.+|.
T Consensus       163 ~d~~~l~~~l~~~~~avivep~~~~~G~~~~~~~~l~~l~  202 (389)
T PRK01278        163 GDIEALKAAITPNTAAILIEPIQGEGGIRPAPDEFLKGLR  202 (389)
T ss_pred             CCHHHHHHhhCCCeEEEEEecccCCCCCcCCCHHHHHHHH
Confidence            588999999988899999998889998 788888888775

>KOG1368|consensus

Probab=96.51  E-value=0.0077  Score=42.08  Aligned_cols=42  Identities=38%  Similarity=0.541  Sum_probs=36.0

Q ss_pred             CceeCHHHHHhhhc--------CCccEEEEeCCCCccc-cCCCHHHHHHHh
Q psy790           30 DFKLDPAELESKFS--------SRTKLIILNTPHNPLG-KVFTREELEVIA   71 (72)
Q Consensus        30 ~~~~d~~~l~~~~~--------~~~~~i~l~~P~NPtG-~~~~~~~l~~l~   71 (72)
                      +..++++++++++.        +.||+|++.|-||-+| .+++.+++.++.
T Consensus       131 dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~  181 (384)
T KOG1368|consen  131 DGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVK  181 (384)
T ss_pred             CCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHH
Confidence            66789999999985        2489999999999888 999999988764

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=96.41  E-value=0.007  Score=43.70  Aligned_cols=42  Identities=14%  Similarity=0.192  Sum_probs=33.4

Q ss_pred             CceeCHHHHHhhhcC----CccEEEEeCCCCcc-ccCCCHHHHHHHh
Q psy790           30 DFKLDPAELESKFSS----RTKLIILNTPHNPL-GKVFTREELEVIA   71 (72)
Q Consensus        30 ~~~~d~~~l~~~~~~----~~~~i~l~~P~NPt-G~~~~~~~l~~l~   71 (72)
                      ++.+|++++++++++    ++++|.+.+++|-. |.+++.+.++++.
T Consensus       151 ~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~  197 (450)
T TIGR02618       151 KGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVR  197 (450)
T ss_pred             CCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHH
Confidence            678999999999975    45578899999976 8998876666553

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=96.36  E-value=0.0092  Score=40.65  Aligned_cols=39  Identities=28%  Similarity=0.339  Sum_probs=30.9

Q ss_pred             CHHHHHhhhc----C--CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFS----S--RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~----~--~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |++.+++.++    +  ++++|++.+.+||+|...+.++|.++|+
T Consensus       157 d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~  201 (397)
T PRK06939        157 DMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLAD  201 (397)
T ss_pred             CHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHH
Confidence            5677776664    2  6778887778999999999999998873

>PRK05367 glycine dehydrogenase; Provisional

Probab=96.30  E-value=0.01  Score=46.14  Aligned_cols=57  Identities=18%  Similarity=0.125  Sum_probs=45.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC---CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|+++|++++.+   ++.+|++++|++-.+...+.++|.++++
T Consensus       608 ~~~G~~vv~v~~d~-------------~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h  667 (954)
T PRK05367        608 VMAGMKVVVVACDE-------------NGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVH  667 (954)
T ss_pred             HHCCCEEEEECCCC-------------CCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHH
Confidence            46789999999875             456899999998854   4678899999887444578999988863

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=96.29  E-value=0.0071  Score=41.16  Aligned_cols=38  Identities=18%  Similarity=0.204  Sum_probs=28.9

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccC-CCHHHHHHHh
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKV-FTREELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~l~   71 (72)
                      |++.+++.+.+++++|+++.++||+|.. ++.+.+.+|.
T Consensus       159 d~~~l~~~~~~~~~~v~~~p~~~~~g~~~~~~~~l~~i~  197 (379)
T TIGR00707       159 DIESLKKAIDDETAAVIVEPIQGEGGVNPASAEFLKALR  197 (379)
T ss_pred             CHHHHHHHhhhCeeEEEEEccccCCCCccCCHHHHHHHH
Confidence            7899999988889999997667777764 5766665553

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=96.19  E-value=0.0071  Score=43.61  Aligned_cols=59  Identities=24%  Similarity=0.238  Sum_probs=51.7

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccE--EEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKL--IILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~--i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++.+|++.+.+++.+.            ++.+|++++++++.+.+-.  |+.+-+.-+||.+=+.++|.+||+
T Consensus       174 a~~lG~~~~~v~~~~~------------~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~  234 (460)
T COG0076         174 ARYLGLGLRRVPTVPT------------DYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAE  234 (460)
T ss_pred             HHHhCCCceeEEeccC------------ccccCHHHHHHHHHhhccCceEEEEecCCCCCccCCHHHHHHHHH
Confidence            4678999999999873            6889999999999887766  888889999999999999999874

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=96.13  E-value=0.0095  Score=41.59  Aligned_cols=28  Identities=11%  Similarity=0.267  Sum_probs=25.5

Q ss_pred             CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           45 RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        45 ~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++++|++.+|.||+|.+.+.+++.++++
T Consensus       138 ~t~~vi~E~v~~~~G~i~~l~~i~~l~~  165 (392)
T PLN03227        138 QRRFLVVEGLYKNTGTLAPLKELVALKE  165 (392)
T ss_pred             CcEEEEEcCCcCCCCcccCHHHHHHHHH
Confidence            6889999999999999999999998874

>PLN02263 serine decarboxylase

Probab=96.04  E-value=0.012  Score=42.62  Aligned_cols=58  Identities=12%  Similarity=0.028  Sum_probs=47.3

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCc---cEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRT---KLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~---~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++.+|++++.||.+.             ++.+|+++|++++..++   -+|+.+-..-++|.+=+.++|.++++
T Consensus       195 a~llgi~~~~Vp~d~-------------~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~  255 (470)
T PLN02263        195 ARMYRMECVKVDTLV-------------SGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLE  255 (470)
T ss_pred             HHhcCCcceEeccCC-------------CCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHH
Confidence            456888999999875             77899999999886443   45666778899999999999999873

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=95.97  E-value=0.013  Score=40.76  Aligned_cols=37  Identities=24%  Similarity=0.314  Sum_probs=29.1

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCC--CHHHHHHHh
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVF--TREELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~--~~~~l~~l~   71 (72)
                      |++.+++.+.+++++|+++ |.||+|.++  +.+.+++|+
T Consensus       173 d~~~l~~~l~~~~aaiiie-p~~~~gg~~~~~~~~l~~l~  211 (403)
T PRK05093        173 DLAAVKAVIDDHTCAVVVE-PIQGEGGVIPATPEFLQGLR  211 (403)
T ss_pred             CHHHHHHHhcCCeEEEEEe-cccCCCCCccCCHHHHHHHH
Confidence            7899999887788888887 999998876  666666554

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=95.81  E-value=0.027  Score=41.17  Aligned_cols=42  Identities=19%  Similarity=0.074  Sum_probs=36.7

Q ss_pred             CceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        30 ~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..+|.+++++.+.++++.|+++..+|- |...+.+++.+|++
T Consensus       204 ~g~iD~d~l~~~~~~~~plvii~g~S~~-~~~~dl~~i~eia~  245 (493)
T PRK13580        204 TGLLDYDEIAALAREFKPLILVAGYSAY-PRRVNFAKLREIAD  245 (493)
T ss_pred             cCccCHHHHHHHHhhcCCEEEEeCcccc-CCCcCHHHHHHHHH
Confidence            4668999999999989999999999888 55889999999874

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=95.76  E-value=0.017  Score=39.71  Aligned_cols=42  Identities=14%  Similarity=0.226  Sum_probs=27.3

Q ss_pred             CceeCHHHHHhhhcC---CccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790           30 DFKLDPAELESKFSS---RTKLIILNTPHNPLGKVFT----REELEVIA   71 (72)
Q Consensus        30 ~~~~d~~~l~~~~~~---~~~~i~l~~P~NPtG~~~~----~~~l~~l~   71 (72)
                      .+..|++.+++.+..   ++++++++..+|++|.+++    .++|.++|
T Consensus       173 ~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~  221 (413)
T cd00610         173 ELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELC  221 (413)
T ss_pred             hHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHH
Confidence            355688999988865   4455555444666799886    55555554

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PLN02724 Molybdenum cofactor sulfurase

Probab=95.60  E-value=0.025  Score=43.06  Aligned_cols=63  Identities=13%  Similarity=0.202  Sum_probs=39.8

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeC--HHHHHhhh----------cCCccEEEEeCCCCccccCCCHHHHHHH
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLD--PAELESKF----------SSRTKLIILNTPHNPLGKVFTREELEVI   70 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d--~~~l~~~~----------~~~~~~i~l~~P~NPtG~~~~~~~l~~l   70 (72)
                      +..|+++++++++.....     .......++  .+++++.+          .+++++|.+++-+|-||.+++.+.+..+
T Consensus       143 ~~~G~~v~~v~~~~~~~~-----~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~  217 (805)
T PLN02724        143 LEKGAAAIAVDIEEAANQ-----PTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLI  217 (805)
T ss_pred             HHcCCeEEeccchhcccc-----ccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHH
Confidence            456889999988632100     000012232  25565543          2467899999999999999999977544

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=95.52  E-value=0.032  Score=39.59  Aligned_cols=58  Identities=19%  Similarity=0.252  Sum_probs=48.8

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc--CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS--SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++++|++++.+....             .-.+++++++++++  +..++|.+.+-=-+||...+.++|.++++
T Consensus        99 a~~~g~~v~~~~~~w-------------g~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k  158 (383)
T COG0075          99 AERYGAEVVVLEVEW-------------GEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAK  158 (383)
T ss_pred             HHHhCCceEEEeCCC-------------CCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHH
Confidence            567899999988874             34578999999997  45789999999999999999999998874

>PLN02271 serine hydroxymethyltransferase

Probab=95.32  E-value=0.05  Score=40.56  Aligned_cols=41  Identities=22%  Similarity=0.308  Sum_probs=35.1

Q ss_pred             CceeCHHHHHh-hhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           30 DFKLDPAELES-KFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        30 ~~~~d~~~l~~-~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++.+|.+++++ +...++|+|++..-.+|  ..++.+++.+||+
T Consensus       282 ~g~IDyd~lek~a~~~rPKLII~g~Sayp--r~~D~~~i~eIAd  323 (586)
T PLN02271        282 TGYIDYDKLEEKALDFRPKILICGGSSYP--REWDYARFRQIAD  323 (586)
T ss_pred             cCccCHHHHHHHhhhcCCeEEEECchhcc--CcCCHHHHHHHHH
Confidence            56799999998 55788999999888888  8899999999874

>PLN02880 tyrosine decarboxylase

Probab=94.87  E-value=0.049  Score=39.42  Aligned_cols=59  Identities=20%  Similarity=0.176  Sum_probs=44.8

Q ss_pred             ccCCCe---EEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCC------ccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGV---PIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSR------TKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..+|+.   ++.||++..+           .+.+|+++|++++...      +-+|+-+-..-.||.+-+.++|.++|+
T Consensus       199 ~~lGlg~~~v~~Vp~d~~~-----------~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~  266 (490)
T PLN02880        199 QIAGIHPENCRLLKTDSST-----------NYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAK  266 (490)
T ss_pred             HHcCCCHHHEEEeecCCCc-----------CCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHH
Confidence            445653   7788887543           7889999999988532      345666677889999999999999874

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=94.80  E-value=0.09  Score=37.54  Aligned_cols=56  Identities=20%  Similarity=0.256  Sum_probs=34.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeC-CCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNT-PHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~-P~NPtG~~~~~~~l~~l~   71 (72)
                      +-+|+....+++.+             +..+|++.+++++++++|++++-- -.=-+=..++.++|++++
T Consensus       125 ~e~Gi~Y~~v~L~~-------------dg~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i  181 (403)
T PF06838_consen  125 KEFGIKYREVPLTE-------------DGTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEII  181 (403)
T ss_dssp             GGGT-EEEE--B-T-------------TSSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHH
T ss_pred             HHhCceeEEEeecC-------------CCCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHH
Confidence            56789999999987             566899999999999999988653 232333345677777665

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PLN02483 serine palmitoyltransferase

Probab=94.58  E-value=0.1  Score=37.64  Aligned_cols=26  Identities=19%  Similarity=0.298  Sum_probs=21.0

Q ss_pred             cEEEEeCC-CCccccCCCHHHHHHHhC
Q psy790           47 KLIILNTP-HNPLGKVFTREELEVIAK   72 (72)
Q Consensus        47 ~~i~l~~P-~NPtG~~~~~~~l~~l~~   72 (72)
                      ++++++++ .|++|.+.+.++|.++++
T Consensus       241 k~livve~v~s~~G~~~~l~~I~~la~  267 (489)
T PLN02483        241 KIIVIVEGIYSMEGELCKLPEIVAVCK  267 (489)
T ss_pred             eEEEEECCCCCCCCcccCHHHHHHHHH
Confidence            65666655 699999999999999874

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=94.50  E-value=0.083  Score=38.39  Aligned_cols=41  Identities=15%  Similarity=0.208  Sum_probs=31.8

Q ss_pred             CceeCHHHHHhhhcC----CccEEEEeCCCCcc-ccCCCHHHHHHH
Q psy790           30 DFKLDPAELESKFSS----RTKLIILNTPHNPL-GKVFTREELEVI   70 (72)
Q Consensus        30 ~~~~d~~~l~~~~~~----~~~~i~l~~P~NPt-G~~~~~~~l~~l   70 (72)
                      +|.+|++++++++++    +++++.+.+++|.. |.+++.+.+.++
T Consensus       158 tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I  203 (460)
T PRK13237        158 KGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAV  203 (460)
T ss_pred             CCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHH
Confidence            688999999999864    34567888899999 788876555544

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=94.44  E-value=0.043  Score=38.40  Aligned_cols=58  Identities=21%  Similarity=0.241  Sum_probs=42.7

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC---C--cc-EEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---R--TK-LIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~--~~-~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..+|+.++.||+++             ++.+|+++|++++..   +  +- +|+.+-..-.||.+=+.++|.+|++
T Consensus       158 a~~lGlg~~~I~~~~-------------~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~  221 (373)
T PF00282_consen  158 ARILGLGVRKIPTDE-------------DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICE  221 (373)
T ss_dssp             HHHTTSEEEEE-BBT-------------TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHH
T ss_pred             cceeeeEEEEecCCc-------------chhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhcc
Confidence            456788999999987             678999999988743   2  22 5667778899999999999999874

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PLN02624 ornithine-delta-aminotransferase

Probab=94.44  E-value=0.065  Score=38.49  Aligned_cols=38  Identities=18%  Similarity=0.300  Sum_probs=29.8

Q ss_pred             CHHHHHhhhc---CCccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790           34 DPAELESKFS---SRTKLIILNTPHNPLGKVFT----REELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~----~~~l~~l~   71 (72)
                      |++.+++.+.   .++.+|++..++|++|.+++    .++|.++|
T Consensus       210 d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc  254 (474)
T PLN02624        210 DLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELC  254 (474)
T ss_pred             CHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHH
Confidence            5788888774   45788999999999999998    55555554

>KOG1411|consensus

Probab=94.16  E-value=0.14  Score=36.45  Aligned_cols=42  Identities=31%  Similarity=0.312  Sum_probs=29.8

Q ss_pred             CceeCHHHHHhhhcCCc-cEEEEeC--CCCccccCCCHHHHHHHh
Q psy790           30 DFKLDPAELESKFSSRT-KLIILNT--PHNPLGKVFTREELEVIA   71 (72)
Q Consensus        30 ~~~~d~~~l~~~~~~~~-~~i~l~~--P~NPtG~~~~~~~l~~l~   71 (72)
                      .-.+|++.+.+.+...+ ..+++.+  .|||||.--+.+++++|.
T Consensus       180 t~gld~~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~  224 (427)
T KOG1411|consen  180 TRGLDFKGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKIS  224 (427)
T ss_pred             ccccchHHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHH
Confidence            45678877777665433 2344443  499999999999998875

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=94.14  E-value=0.14  Score=36.43  Aligned_cols=41  Identities=22%  Similarity=0.234  Sum_probs=31.9

Q ss_pred             CceeCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           30 DFKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        30 ~~~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++.+|+++|++.+.. +++++++.+  +.+|...|.++|.++|+
T Consensus       166 ~g~id~~~L~~~l~~~~~~lvi~~~--s~~g~~~di~~I~~i~~  207 (452)
T PTZ00094        166 KGLIDYDKLEELAKAFRPKLIIAGA--SAYPRDIDYKRFREICD  207 (452)
T ss_pred             CCCcCHHHHHHHHHHhCCCEEEEeC--CCCCCccCHHHHHHHHH
Confidence            456899999999853 677776543  35999999999998874

>KOG2862|consensus

Probab=94.03  E-value=0.15  Score=35.98  Aligned_cols=57  Identities=11%  Similarity=0.077  Sum_probs=45.0

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-CCccEEEEeCCCCccccCCC-HHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFT-REELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~-~~~l~~l~   71 (72)
                      .++.|+++..++.+.             +-..+++.+.+++. .+++++++++--.-||...+ .+.+.+++
T Consensus       111 ~~r~ga~V~~v~~~~-------------G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc  169 (385)
T KOG2862|consen  111 ARRYGAEVDVVEADI-------------GQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELC  169 (385)
T ss_pred             HHhhCceeeEEecCc-------------ccCccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHh
Confidence            467899999998765             34567899988885 46899999999999999999 55555554

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=94.02  E-value=0.14  Score=35.91  Aligned_cols=42  Identities=33%  Similarity=0.510  Sum_probs=33.7

Q ss_pred             CceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790           30 DFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus        30 ~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..+++++++..+.+      .+.++++-|.+|-.|++++.++|++|.
T Consensus       109 ~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~  156 (342)
T COG2008         109 DGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAIS  156 (342)
T ss_pred             CCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHH
Confidence            677999999997642      356777777777889999999999875

>KOG1412|consensus

Probab=93.82  E-value=0.19  Score=35.50  Aligned_cols=43  Identities=35%  Similarity=0.403  Sum_probs=31.7

Q ss_pred             CceeCHHHHHhhhcCCc--cEEEEeCC-CCccccCCCHHHHHHHhC
Q psy790           30 DFKLDPAELESKFSSRT--KLIILNTP-HNPLGKVFTREELEVIAK   72 (72)
Q Consensus        30 ~~~~d~~~l~~~~~~~~--~~i~l~~P-~NPtG~~~~~~~l~~l~~   72 (72)
                      .-.+|++.+...+...+  ..++++.. |||||.-.+.|++..|++
T Consensus       160 ~k~~d~e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~  205 (410)
T KOG1412|consen  160 NKCVDLEGFLSDLESAPEGSIIILHACAHNPTGMDPTREQWKQIAD  205 (410)
T ss_pred             CceecHHHHHHHHhhCCCCcEEeeeccccCCCCCCCCHHHHHHHHH
Confidence            44578888888875433  34444444 999999999999988863

>PLN02590 probable tyrosine decarboxylase

Probab=93.73  E-value=0.14  Score=37.73  Aligned_cols=59  Identities=19%  Similarity=0.151  Sum_probs=45.0

Q ss_pred             ccCCC---eEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCC------ccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGG---VPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSR------TKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~---~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +.+|+   .++.||++..+           .|.+|+++|++++...      +-+|+-+-..=.||.+=+.++|.++|+
T Consensus       247 ~ilGlg~~~vr~Vp~d~~~-----------~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~  314 (539)
T PLN02590        247 LIGGIHEENIRLLKTDSST-----------NYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAK  314 (539)
T ss_pred             HHcCCCcccEEEEeCCCCC-----------CCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHH
Confidence            34555   58888887543           7899999999998542      345666667888999999999999874

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=93.71  E-value=0.11  Score=35.76  Aligned_cols=38  Identities=13%  Similarity=0.148  Sum_probs=30.8

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFT----REELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~----~~~l~~l~   71 (72)
                      |++.+++.+.+++.+|++..++|++|...+    .+++.++|
T Consensus       154 dl~~l~~~l~~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~  195 (375)
T PRK04260        154 DLNSVKALVNKNTAAVMLELVQGESGVLPADKDFVKALADYC  195 (375)
T ss_pred             CHHHHHHhcCCCeEEEEECCeECCCCCcCCCHHHHHHHHHHH
Confidence            788999888777889999999999999876    35555554

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=93.08  E-value=0.18  Score=35.27  Aligned_cols=38  Identities=18%  Similarity=0.205  Sum_probs=29.4

Q ss_pred             eCHHHHHhhhcCCccEEEEeCCCCccccCC--CHHHHHHHh
Q psy790           33 LDPAELESKFSSRTKLIILNTPHNPLGKVF--TREELEVIA   71 (72)
Q Consensus        33 ~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~--~~~~l~~l~   71 (72)
                      .|++.+++.+.+++++|++ .|.|++|-++  +.+.+++|.
T Consensus       171 ~d~~~l~~~l~~~~aavii-EPv~~~gg~~~~~~~~l~~l~  210 (406)
T PRK12381        171 NDLNSASALIDDQTCAVIV-EPIQGEGGVIPADKAFLQGLR  210 (406)
T ss_pred             CCHHHHHHhccCCeeEEEE-eCCcCCCCCcCCCHHHHHHHH
Confidence            3788999988777888777 6999999765  567666654

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=92.86  E-value=0.2  Score=34.98  Aligned_cols=36  Identities=28%  Similarity=0.341  Sum_probs=26.3

Q ss_pred             CHHHHHhhhc---CCccEEEEe-CCCCccccCCCH-HHHHHH
Q psy790           34 DPAELESKFS---SRTKLIILN-TPHNPLGKVFTR-EELEVI   70 (72)
Q Consensus        34 d~~~l~~~~~---~~~~~i~l~-~P~NPtG~~~~~-~~l~~l   70 (72)
                      |++++++.+.   .++++|++. .|+| +|.+++. +.+.+|
T Consensus       181 d~~~l~~~i~~~~~~~aavi~ep~~~~-~G~~~~~~~~l~~l  221 (423)
T TIGR00713       181 DLEALEEVFEEYGEEIAGVIVEPVAGN-MGVVPPKPEFLAGL  221 (423)
T ss_pred             CHHHHHHHHHHcCCcEEEEEEeCCCCC-CCCcCCCHHHHHHH
Confidence            6888988885   567888885 8899 7988883 434333

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=92.06  E-value=0.32  Score=33.26  Aligned_cols=38  Identities=13%  Similarity=0.163  Sum_probs=30.3

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCC-CHHHHHHHh
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVF-TREELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~l~   71 (72)
                      |++.+++.+.+++++|++..+.+++|... +.+.+.+|.
T Consensus       156 d~~~l~~~~~~~~~~ii~e~i~~~~G~~~~~~~~l~~l~  194 (377)
T PRK02936        156 DIKALKEVMNEEVAAVMLEVVQGEGGVIPADPAFLQEVQ  194 (377)
T ss_pred             CHHHHHHhccCCeEEEEEecccCCCCCccCCHHHHHHHH
Confidence            68999999988899999999999998774 655555543

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=91.92  E-value=0.13  Score=35.71  Aligned_cols=49  Identities=6%  Similarity=-0.075  Sum_probs=35.5

Q ss_pred             ccCCC-eEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHH
Q psy790            3 EAAGG-VPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEV   69 (72)
Q Consensus         3 ~~~g~-~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~   69 (72)
                      +..|+ +++.++.+.             +..+|+++++    . +++|.+++-.|.||..++.++|.+
T Consensus       111 ~~~g~~~v~~~~~~~-------------g~~~d~~~i~----~-~~~V~~~h~~t~tG~~~pi~~I~~  160 (378)
T PRK03080        111 KQLKLEDPRVLEADY-------------GSLPDLSAVD----F-DRDVVFTWNGTTTGVRVPVARWIG  160 (378)
T ss_pred             hhcCCCCceEeccCC-------------CCCCCHhhcC----C-CCCEEEEecCCccceeccchhhcc
Confidence            45677 788887653             3345666532    2 677999999999999999887754

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=91.79  E-value=0.32  Score=33.77  Aligned_cols=38  Identities=13%  Similarity=0.209  Sum_probs=29.2

Q ss_pred             CHHHHHhhhc---CCccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790           34 DPAELESKFS---SRTKLIILNTPHNPLGKVFT----REELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~----~~~l~~l~   71 (72)
                      |++.+++.+.   .++.+|++..+++++|.+.+    .++|.++|
T Consensus       172 d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~  216 (401)
T TIGR01885       172 NLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELC  216 (401)
T ss_pred             CHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHH
Confidence            5788888774   45678888888999999997    55666665

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=91.75  E-value=0.13  Score=35.30  Aligned_cols=50  Identities=12%  Similarity=0.260  Sum_probs=34.2

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeC-HHHHHhhhcCCccEEEEeCCCCccccCCC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLD-PAELESKFSSRTKLIILNTPHNPLGKVFT   63 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d-~~~l~~~~~~~~~~i~l~~P~NPtG~~~~   63 (72)
                      ++..|++++.++.+..+           .+. + .+..+..+.+++|+|.+++-.|.||..++
T Consensus       106 a~~~g~~~~~~~~~~~g-----------~~~-~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~  156 (355)
T cd00611         106 AKRYGGVVVIVAAKEEG-----------KYT-KIPDVETWDLAPDAAYVHYCSNETIHGVEFD  156 (355)
T ss_pred             HHhcCCCcEEEeccccc-----------CCC-CCCCHhhcCCCCCCCEEEEeCCcccccEEcc
Confidence            35678888888875421           221 2 22233445678999999999999999854

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=91.60  E-value=0.38  Score=33.52  Aligned_cols=38  Identities=21%  Similarity=0.147  Sum_probs=26.9

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCC-CHHHHHHHh
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVF-TREELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~l~   71 (72)
                      |++.+++.+.+++++|+++.++++.|... +.+.+++|.
T Consensus       168 d~~~l~~~l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~  206 (397)
T TIGR03246       168 DLAAAKALISDKTCAVIVEPIQGEGGVVPADPAFLKGLR  206 (397)
T ss_pred             CHHHHHHHhccCeEEEEEecccCCCCCcCCCHHHHHHHH
Confidence            78999999887888888885455555443 666666554

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=90.24  E-value=0.78  Score=32.08  Aligned_cols=60  Identities=17%  Similarity=0.289  Sum_probs=47.9

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-------CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-------SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-------~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++++|..+..||-....           .|.++++...+.+.       ..+.+.++++|.--.|.+.+.+.+.++|+
T Consensus       117 AEragl~v~eVp~tg~P-----------ey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~  183 (382)
T COG1103         117 AERAGLNVAEVPNTGYP-----------EYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICR  183 (382)
T ss_pred             HHhcCCeEEecCCCCCC-----------ceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHH
Confidence            56789999999955433           79999887766653       23678999999999999999999998874

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=90.10  E-value=0.63  Score=34.94  Aligned_cols=56  Identities=16%  Similarity=0.232  Sum_probs=43.1

Q ss_pred             ccCCC---eEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC----C--ccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGG---VPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS----R--TKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~---~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~----~--~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ..+|+   .++.||++.             ++++|+++|++.+..    .  +-+|+-+-..-.+|.+=+.++|.+|+
T Consensus       240 ~ilGlG~~~vv~VpvD~-------------~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~  304 (608)
T TIGR03811       240 DIIGIGLDQVIPVPVDS-------------NYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALR  304 (608)
T ss_pred             HHcCCCcccEEEeecCC-------------CCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHH
Confidence            34565   488899875             788999999988742    2  33466667788999999999998886

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=90.09  E-value=0.54  Score=32.47  Aligned_cols=35  Identities=23%  Similarity=0.311  Sum_probs=24.7

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +++.++.  .+++++|+++ ++||+|.+++.++|.+|+
T Consensus       127 ~l~~l~~--~~~~~lIiit-g~s~~G~v~~~~~L~~i~  161 (346)
T TIGR03576       127 ELSELKK--IDGTSLVVIT-GSTMDLKVVSEEDLKRVI  161 (346)
T ss_pred             CHHHHhh--CcCceEEEEE-CCCCCCcccCHHHHHHHH
Confidence            3454432  2467888774 579999999888888775

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=89.87  E-value=0.98  Score=31.87  Aligned_cols=41  Identities=22%  Similarity=0.180  Sum_probs=31.9

Q ss_pred             CceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           30 DFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        30 ~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      .+.+|++++++.+. .++|+|++..+.  +|...+.++|.++++
T Consensus       152 ~~~~d~~~le~~l~~~~~klVi~~~~~--~g~~~dl~~l~~la~  193 (416)
T PRK13034        152 TGLIDYDEVEELAKEHKPKLIIAGFSA--YPRELDFARFREIAD  193 (416)
T ss_pred             cCCcCHHHHHHHHhhcCCeEEEECCCc--cccccCHHHHHHHHH
Confidence            45689999988874 368888877665  578889999998863

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=86.98  E-value=0.53  Score=33.87  Aligned_cols=61  Identities=25%  Similarity=0.516  Sum_probs=39.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCH-----HHHHhhhc--CCccE---EEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDP-----AELESKFS--SRTKL---IILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~-----~~l~~~~~--~~~~~---i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ...|+.+++++.....   -|     -...++.     +.+++++.  +..|+   +++++|+ -.|.+++.++|.+++.
T Consensus       124 il~ga~Pvyi~p~~~~---~g-----i~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PT-Y~Gv~~di~~I~~~~h  194 (417)
T PF01276_consen  124 ILSGAIPVYIPPEDNE---YG-----IIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPT-YYGVCYDIKEIAEICH  194 (417)
T ss_dssp             HHHTEEEEEEEEEE-T---TS------BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS--TTSEEE-HHHHHHHHC
T ss_pred             HHcCCeEEEecCCccc---cC-----CccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCC-CCeEEECHHHHHHHhc
Confidence            3468899998765221   00     0223455     88888885  34455   9999984 6799999999998874

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=86.70  E-value=0.24  Score=35.13  Aligned_cols=55  Identities=15%  Similarity=0.128  Sum_probs=4.5

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCcccc----CCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK----VFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~----~~~~~~l~~l~   71 (72)
                      ++..|++++.|-....               -.+++++++++++|.+|+..+++|..-.    ..+.+++.+++
T Consensus       108 m~~sGa~lvEVGttN~---------------t~~~Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la  166 (367)
T PF03841_consen  108 MRQSGARLVEVGTTNR---------------THLSDYEKAITENTAALLKVHTSNFRIQGFTGEVSLEELAELA  166 (367)
T ss_dssp             --------------------------------------------------------------------HHHHHH
T ss_pred             cccccccccccccccc---------------cccccccccccccccccccccccccccccccccccHHHHHHHH
Confidence            3456777776665432               2467789999999999999999998533    45778887776

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=85.94  E-value=1.8  Score=30.59  Aligned_cols=37  Identities=19%  Similarity=0.220  Sum_probs=27.6

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCC--HHHHHHH
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFT--REELEVI   70 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~--~~~l~~l   70 (72)
                      |++.+++.+..+..+.++..|.+++|.+++  .+.+.+|
T Consensus       175 d~~~l~~~~~~~~~aavi~eP~~~~gg~~~~~~~~l~~l  213 (408)
T PRK04612        175 DVEALEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLARV  213 (408)
T ss_pred             CHHHHHHhhCCCCEEEEEECCccCCCCCcCCCHHHHHHH
Confidence            678888888666678888999999998876  3344444

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=85.70  E-value=3.5  Score=31.71  Aligned_cols=65  Identities=9%  Similarity=0.156  Sum_probs=42.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC--Ccc---EEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS--RTK---LIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~--~~~---~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ...|+.++++......   -|--++...-.++.+.+++++..  +.+   ++++++| +--|.+++.+.+.+++
T Consensus       253 ilsga~PVYl~P~rn~---~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~p-TYdG~~yd~~~I~~~~  322 (714)
T PRK15400        253 MMSDVTPIYFRPTRNA---YGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTL  322 (714)
T ss_pred             HHcCCeEEEecccccc---cCCccCCCccccCHHHHHHHHHhCccccCccEEEEECC-CCccEecCHHHHHHHh
Confidence            4578999998765421   01000001112337888888743  333   7899999 7889999999998876

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=85.67  E-value=2.1  Score=30.67  Aligned_cols=51  Identities=24%  Similarity=0.280  Sum_probs=31.7

Q ss_pred             eEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            8 VPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         8 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +.+.++++++            .+.+|.+++++.+. .++|+|++..-+.|  ..++.+++++|++
T Consensus       143 ~~~~y~~d~~------------~~~ID~d~l~~~a~~~kPklIi~G~S~y~--~~~d~~~~reIad  194 (399)
T PF00464_consen  143 ESVPYPVDPD------------TGLIDYDELEKLAKEHKPKLIICGASSYP--RPIDFKRFREIAD  194 (399)
T ss_dssp             EEEEEEB-TT------------TSSB-HHHHHHHHHHH--SEEEEE-SSTS--S---HHHHHHHHH
T ss_pred             EEEeeeeecC------------CCeECHHHHHHHHhhcCCCEEEECchhcc--CccCHHHHHHHHH
Confidence            4566777764            67899999999884 47899887765544  5678888888763

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=84.70  E-value=2.9  Score=30.30  Aligned_cols=41  Identities=27%  Similarity=0.235  Sum_probs=31.5

Q ss_pred             CceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           30 DFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        30 ~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..+|+++|++.+. .++|+|++ .-++ +|...|.+++.++|+
T Consensus       167 ~g~iD~d~Le~~l~~~~pklIv~-~~S~-~s~~~D~a~i~~ia~  208 (475)
T PLN03226        167 TGLIDYDKLEKKAMLFRPKLIIA-GASA-YPRDWDYARMRKIAD  208 (475)
T ss_pred             CCCcCHHHHHHHHhhcCCeEEEE-ecCc-CCCccCHHHHHHHHH
Confidence            56689999999885 46776655 3444 789999999998874

>PRK15029 arginine decarboxylase; Provisional

Probab=84.60  E-value=4.3  Score=31.42  Aligned_cols=66  Identities=18%  Similarity=0.244  Sum_probs=41.8

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc--CCcc--------EEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS--SRTK--------LIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~--------~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ...|+.+++++.....   -|--.+.....++++.+++++.  +.+|        ++++++|+ -.|.+++.+.|.++++
T Consensus       263 ~L~ga~Pvyl~P~~~~---~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PT-Y~Gv~~di~~I~~~~h  338 (755)
T PRK15029        263 ILTGAKPVYMVPSRNR---YGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCT-YDGVCYNAKEAQDLLE  338 (755)
T ss_pred             HHcCCeEEEecccccc---cCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCC-CcceeeCHHHHHHHHH
Confidence            4578999999654311   1110000011233788888874  2344        89999984 6799999999988763

>KOG1360|consensus

Probab=84.51  E-value=1.6  Score=31.99  Aligned_cols=39  Identities=33%  Similarity=0.353  Sum_probs=32.8

Q ss_pred             CHHHHHhhhc----CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFS----SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |++.|++++.    ..+|+|-+.+.+..+|.+.+.|+|..+++
T Consensus       288 D~~hL~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDvah  330 (570)
T KOG1360|consen  288 DLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDVAH  330 (570)
T ss_pred             CHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHHHH
Confidence            6788887774    24799999999999999999999988763

>PRK13578 ornithine decarboxylase; Provisional

Probab=82.74  E-value=3  Score=32.07  Aligned_cols=60  Identities=15%  Similarity=0.204  Sum_probs=40.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeC-----HHHHHhhhcCC----------ccEEEEeCCCCccccCCCHHHH
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLD-----PAELESKFSSR----------TKLIILNTPHNPLGKVFTREEL   67 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d-----~~~l~~~~~~~----------~~~i~l~~P~NPtG~~~~~~~l   67 (72)
                      ...|+.++++......   -|-     -..++     .+.+++++...          .|++++++|. -.|.+++.+.|
T Consensus       233 iLsGa~PVYl~P~~n~---~Gi-----~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pT-YdG~~ydi~~I  303 (720)
T PRK13578        233 IQAGATPVYLETARNP---FGF-----IGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGT-YDGTIYNARQV  303 (720)
T ss_pred             HHcCCeEEEeeccccc---cCC-----cCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCC-CcceeecHHHH
Confidence            4679999999765421   010     11234     34577777433          5889999884 67999999999


Q ss_pred             HHHh
Q psy790           68 EVIA   71 (72)
Q Consensus        68 ~~l~   71 (72)
                      .+++
T Consensus       304 ~~~~  307 (720)
T PRK13578        304 VDKI  307 (720)
T ss_pred             HHHh
Confidence            8873

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=81.85  E-value=4.4  Score=29.31  Aligned_cols=41  Identities=22%  Similarity=0.209  Sum_probs=30.9

Q ss_pred             CceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           30 DFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        30 ~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..+|.|++++.+. .++|+|+.-.-  -.-..++.+++++|++
T Consensus       150 t~~IDyD~~~k~a~e~kPK~ii~G~S--aY~r~id~~~~reIad  191 (413)
T COG0112         150 TGLIDYDEVEKLAKEVKPKLIIAGGS--AYSRPIDFKRFREIAD  191 (413)
T ss_pred             cCccCHHHHHHHHHHhCCCEEEECcc--ccccccCHHHHHHHHH
Confidence            68899999999874 57899885433  3456778888888874

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=81.15  E-value=2.5  Score=30.06  Aligned_cols=37  Identities=32%  Similarity=0.349  Sum_probs=31.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEe
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILN   52 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~   52 (72)
                      +-+|++...+|+..             +..+|.+.++.+++++||+|.+-
T Consensus       136 ~dfgi~Y~~v~Lt~-------------~gkiD~~~v~~~i~~~tkli~IQ  172 (416)
T COG4100         136 KDFGIKYKAVPLTA-------------DGKIDIQAVKTAISDRTKLIGIQ  172 (416)
T ss_pred             HHhCcceeeccccc-------------CCcccHHHHHHhcCccceEEEEE
Confidence            34688889999987             55689999999999999998865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	72
3e2f_A	410	Crystal Structure Of Mouse Kynurenine Aminotransfer		2e-19
3e2z_B	410	Crystal Structure Of Mouse Kynurenine Aminotransfer		2e-19
1w7l_A	422	Crystal Structure Of Human Kynurenine Aminotransfer		1e-16
3fvs_A	422	Human Kynurenine Aminotransferase I In Complex With		1e-16
1w7n_A	422	Crystal Structure Of Human Kynurenine Aminotransfer		1e-16
1yiy_A	429	Aedes Aegypti Kynurenine Aminotransferase Length =		3e-16
1yiz_A	429	Aedes Aegypti Kynurenine Aminotrasferase Length = 4		3e-16
3b46_A	447	Crystal Structure Of Bna3p, A Putative Kynurenine A		4e-10
1v2d_A	381	Crystal Structure Of T.Th Hb8 Glutamine Aminotransf		3e-06
1j32_A	388	Aspartate Aminotransferase From Phormidium Lapideum		2e-05
1gde_A	389	Crystal Structure Of Pyrococcus Protein A-1 E-form		5e-05
1dju_A	388	Crystal Structure Of Aromatic Aminotransferase From		5e-05
3t32_B	383	Crystal Structure Of A Putative C-S Lyase From Baci		2e-04
1b5o_A	385	Thermus Thermophilus Aspartate Aminotransferase Sin		2e-04
5bj3_A	385	Thermus Thermophilus Aspartate Aminotransferase Tet		2e-04
1bjw_A	382	Aspartate Aminotransferase From Thermus Thermophilu		3e-04
1gck_A	385	Thermus Thermophilus Aspartate Aminotransferase Dou		3e-04
1gc3_A	385	Thermus Thermophilus Aspartate Aminotransferase Tet		3e-04
1bkg_A	385	Aspartate Aminotransferase From Thermus Thermophilu		3e-04
1u08_A	386	Crystal Structure And Reactivity Of Ybdl From Esche		8e-04

>pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii, Plp-Bound Form Length = 410

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 56/71 (78%), Gaps = 2/71 (2%)
Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M   AG VP++IPL+ + P + G   +S+D+  DP ELESKFSS+TK IILNTPHNPLGK
Sbjct: 125 MVRMAGAVPVFIPLR-SKPTD-GMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGK 182
Query: 61  VFTREELEVIA 71
           V+TR+EL+VIA
Sbjct: 183 VYTRQELQVIA 193

>pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii In Complex With Kynurenine Length = 410

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 56/71 (78%), Gaps = 2/71 (2%)
Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M   AG VP++IPL+ + P + G   +S+D+  DP ELESKFSS+TK IILNTPHNPLGK
Sbjct: 125 MVRMAGAVPVFIPLR-SKPTD-GMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGK 182
Query: 61  VFTREELEVIA 71
           V+TR+EL+VIA
Sbjct: 183 VYTRQELQVIA 193

>pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I Length = 422

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/71 (53%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M+  AGG P+++ L+   P + G   SS++++LDP EL  KF+SRTK ++LNTP+NPLGK
Sbjct: 131 MTMMAGGRPVFVSLK-PGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGK 189
Query: 61  VFTREELEVIA 71
           VF+REELE++A
Sbjct: 190 VFSREELELVA 200

>pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With Glycerol Length = 422

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/71 (53%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M+  AGG P+++ L+   P + G   SS++++LDP EL  KF+SRTK ++LNTP+NPLGK
Sbjct: 131 MTMMAGGRPVFVSLK-PGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGK 189
Query: 61  VFTREELEVIA 71
           VF+REELE++A
Sbjct: 190 VFSREELELVA 200

>pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I In Pmp Form Length = 422

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/71 (53%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M+  AGG P+++ L+   P + G   SS++++LDP EL  KF+SRTK ++LNTP+NPLGK
Sbjct: 131 MTMMAGGRPVFVSLK-PGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGK 189
Query: 61  VFTREELEVIA 71
           VF+REELE++A
Sbjct: 190 VFSREELELVA 200

>pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase Length = 429

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/71 (57%), Positives = 53/71 (74%), Gaps = 3/71 (4%)
Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M +AAGG+P +IPL+   P + G   SSAD+ LD  ELE+ F+ +TK+II+NTPHNPLGK
Sbjct: 141 MVKAAGGIPRFIPLK---PNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGK 197
Query: 61  VFTREELEVIA 71
           V  R ELEV+A
Sbjct: 198 VMDRAELEVVA 208

>pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase Length = 429

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/71 (57%), Positives = 53/71 (74%), Gaps = 3/71 (4%)
Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M +AAGG+P +IPL+   P + G   SSAD+ LD  ELE+ F+ +TK+II+NTPHNPLGK
Sbjct: 141 MVKAAGGIPRFIPLK---PNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGK 197
Query: 61  VFTREELEVIA 71
           V  R ELEV+A
Sbjct: 198 VMDRAELEVVA 208

>pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine Aminotransferase From Saccharomyces Cerevisiae Length = 447

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 3   EAAGGVPIYIPLQDTSPAE-PGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKV 61
           E  GG  +Y+P+    P E   R+    ++ +D  + E   +S+TK +I+NTPHNP+GKV
Sbjct: 160 ELCGGKVVYVPIN--PPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPHNPIGKV 217
Query: 62  FTREELEVIAK 72
           FTREEL  +  
Sbjct: 218 FTREELTTLGN 228

>pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 31  FKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
           F+LD + LE   + RT+ ++LNTP NP G VF   ELE IA+
Sbjct: 138 FRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIAR 179

>pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 31  FKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
           FK+ P ++    + +TKL++ NTP NP G V+T +E+  IA+
Sbjct: 149 FKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQ 190

>pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 11/67 (16%)
Query: 5   AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
           AGG P+ +P  +             +F+L+  EL+   + +T+ +I+N+P NP G V T+
Sbjct: 131 AGGKPVEVPTYEED-----------EFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTK 179
Query: 65  EELEVIA 71
           ++LE IA
Sbjct: 180 KDLEEIA 186

>pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 11/67 (16%)
Query: 5   AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
           AGG P+ +P  +             +F+L+  EL+   + +T+ +I+N+P NP G V T+
Sbjct: 130 AGGKPVEVPTYEED-----------EFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTK 178
Query: 65  EELEVIA 71
           ++LE IA
Sbjct: 179 KDLEEIA 185

>pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M   AGGV + +   +T P E         F  DP  +    + RTK +++N+P+NP G 
Sbjct: 131 MVRFAGGVVVEV---ETLPEE--------GFVPDPERVRRAITPRTKALVVNSPNNPTGA 179
Query: 61  VFTREELEVIAK 72
           V+ +E LE +A+
Sbjct: 180 VYPKEVLEALAR 191

>pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M   AGGV + +   +T P E         F  DP  +    + RTK +++N+P+NP G 
Sbjct: 131 MVRFAGGVVVEV---ETLPEE--------GFVPDPERVRRAITPRTKALVVNSPNNPTGA 179
Query: 61  VFTREELEVIAK 72
           V+ +E LE +A+
Sbjct: 180 VYPKEVLEALAR 191

>pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M   AGGV + +   +T P E         F  DP  +    + RTK +++N+P+NP G 
Sbjct: 131 MVRFAGGVVVEV---ETLPEE--------GFVPDPERVRRAITPRTKALVVNSPNNPTGA 179
Query: 61  VFTREELEVIAK 72
           V+ +E LE +A+
Sbjct: 180 VYPKEVLEALAR 191

>pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M   AGGV + +   +T P E         F  DP  +    + RTK +++N+P+NP G 
Sbjct: 131 MVRFAGGVVVEV---ETLPEE--------GFVPDPERVRRAITPRTKALVVNSPNNPTGA 179
Query: 61  VFTREELEVIAK 72
           V+ +E LE +A+
Sbjct: 180 VYPKEVLEALAR 191

>pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M   AGGV + +   +T P E         F  DP  +    + RTK +++N+P+NP G 
Sbjct: 131 MVRFAGGVVVEV---ETLPEE--------GFVPDPERVRRAITPRTKALVVNSPNNPTGA 179
Query: 61  VFTREELEVIAK 72
           V+ +E LE +A+
Sbjct: 180 VYPKEVLEALAR 191

>pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M   AGGV + +   +T P E         F  DP  +    + RTK +++N+P+NP G 
Sbjct: 131 MVRFAGGVVVEV---ETLPEE--------GFVPDPERVRRAITPRTKALVVNSPNNPTGA 179
Query: 61  VFTREELEVIAK 72
           V+ +E LE +A+
Sbjct: 180 VYPKEVLEALAR 191

>pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia Coli Identify A Methionine Aminotransferase Function. Length = 386

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 31  FKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVI 70
           F++D  E  +  S RT+L+ILNTPHNP   V+ + +   +
Sbjct: 149 FRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAAL 188

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	72
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	1e-29
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	2e-29
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	2e-29
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	5e-29
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	5e-27
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	4e-26
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	1e-25
3nra_A	407	Aspartate aminotransferase; structural genomics, j	7e-19
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	6e-18
3ele_A	398	Amino transferase; RER070207001803, structural gen	2e-17
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	2e-17
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	3e-17
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	5e-17
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	1e-16
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	2e-16
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	3e-16
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	7e-16
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	1e-15
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	7e-15
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	7e-15
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	3e-14
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	9e-14
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	4e-13
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	6e-13
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	1e-12
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	2e-12
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	8e-12
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	2e-11
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	2e-11
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	4e-11
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	4e-11
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	5e-11
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	6e-11
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	8e-11
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	9e-11
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	2e-10
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	2e-10
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	2e-09
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	3e-09
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	3e-09
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	4e-09
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	6e-09
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	1e-08
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	2e-08
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	1e-07
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	2e-07
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	4e-07
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	7e-07
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	8e-07
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	1e-06
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	1e-06
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	2e-06
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	3e-06
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	4e-06
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	7e-06
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	7e-06
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	1e-05
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	1e-05
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	3e-05
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	5e-04
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	6e-04
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	6e-04

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429

 Score =  106 bits (267), Expect = 1e-29
 Identities = 41/72 (56%), Positives = 53/72 (73%), Gaps = 3/72 (4%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M +AAGG+P +IPL+   P + G   SSAD+ LD  ELE+ F+ +TK+II+NTPHNPLGK
Sbjct: 141 MVKAAGGIPRFIPLK---PNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGK 197

Query: 61  VFTREELEVIAK 72
           V  R ELEV+A 
Sbjct: 198 VMDRAELEVVAN 209

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410

 Score =  106 bits (266), Expect = 2e-29
 Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 2/72 (2%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M   AG VP++IPL+  S    G   +S+D+  DP ELESKFSS+TK IILNTPHNPLGK
Sbjct: 125 MVRMAGAVPVFIPLR--SKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGK 182

Query: 61  VFTREELEVIAK 72
           V+TR+EL+VIA 
Sbjct: 183 VYTRQELQVIAD 194

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422

 Score =  105 bits (265), Expect = 2e-29
 Identities = 38/72 (52%), Positives = 55/72 (76%), Gaps = 1/72 (1%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M+  AGG P+++ L+   P + G   SS++++LDP EL  KF+SRTK ++LNTP+NPLGK
Sbjct: 131 MTMMAGGRPVFVSLKPG-PIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGK 189

Query: 61  VFTREELEVIAK 72
           VF+REELE++A 
Sbjct: 190 VFSREELELVAS 201

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447

 Score =  105 bits (263), Expect = 5e-29
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
             E  GG  +Y+P+         R+    ++ +D  + E   +S+TK +I+NTPHNP+GK
Sbjct: 158 NIELCGGKVVYVPIN-PPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPHNPIGK 216

Query: 61  VFTREELEVIAK 72
           VFTREEL  +  
Sbjct: 217 VFTREELTTLGN 228

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381

 Score = 99.2 bits (248), Expect = 5e-27
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 10/72 (13%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
            +  AG     + L  T             F+LD + LE   + RT+ ++LNTP NP G 
Sbjct: 118 DAFLAGAKARLVRLDLTPE----------GFRLDLSALEKALTPRTRALLLNTPMNPTGL 167

Query: 61  VFTREELEVIAK 72
           VF   ELE IA+
Sbjct: 168 VFGERELEAIAR 179

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411

 Score = 97.3 bits (243), Expect = 4e-26
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 10/72 (13%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           +   AG   + +PL                F LD   L    + RT+ +I+N+PHNP G 
Sbjct: 126 VVAMAGAHRVTVPL----------VPDGRGFALDADALRRAVTPRTRALIINSPHNPTGA 175

Query: 61  VFTREELEVIAK 72
           V +  EL  IA+
Sbjct: 176 VLSATELAAIAE 187

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386

 Score = 95.3 bits (238), Expect = 1e-25
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 12/72 (16%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
               +GG+   + LQ               F++D  E  +  S RT+L+ILNTPHNP   
Sbjct: 131 AIALSGGIVKRMALQ------------PPHFRVDWQEFAALLSERTRLVILNTPHNPSAT 178

Query: 61  VFTREELEVIAK 72
           V+ + +   + +
Sbjct: 179 VWQQADFAALWQ 190

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407

 Score = 77.2 bits (191), Expect = 7e-19
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 5   AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
             G  + + L   S  E           LD   LE  F +  ++ + + P+NP G V++ 
Sbjct: 146 FEGEMVPVQLDYVSADETR-------AGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSA 198

Query: 65  EELEVIAK 72
           EE+  IA 
Sbjct: 199 EEIGQIAA 206

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375

 Score = 74.5 bits (184), Expect = 6e-18
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 11/72 (15%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           + ++ G       +           +    +  D  +L       TK+I +N  +NP G 
Sbjct: 121 IPKSLGAEVDLWQI-----------EEENGWLPDLEKLRQLIRPTTKMICINNANNPTGA 169

Query: 61  VFTREELEVIAK 72
           V  R  LE + +
Sbjct: 170 VMDRTYLEELVE 181

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398

 Score = 73.4 bits (181), Expect = 2e-17
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 12/72 (16%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
              AAG   + +P                 F++D   LE + ++ T+ +I+N+P+NP G 
Sbjct: 140 FVNAAGARLVEVPADTE------------HFQIDFDALEERINAHTRGVIINSPNNPSGT 187

Query: 61  VFTREELEVIAK 72
           V++ E ++ ++ 
Sbjct: 188 VYSEETIKKLSD 199

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389

 Score = 72.9 bits (180), Expect = 2e-17
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 11/68 (16%)

Query: 5   AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
           AGG P+ +P                +F+L+  EL+   + +T+ +I+N+P NP G V T+
Sbjct: 131 AGGKPVEVPT-----------YEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTK 179

Query: 65  EELEVIAK 72
           ++LE IA 
Sbjct: 180 KDLEEIAD 187

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406

 Score = 72.6 bits (179), Expect = 3e-17
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 11/68 (16%)

Query: 5   AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
            GG P+                   D++ D  ++  K + RTK I +  P+NP G ++ +
Sbjct: 145 YGGKPVEYRT-----------IEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDK 193

Query: 65  EELEVIAK 72
           + LE I  
Sbjct: 194 KTLEEILN 201

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437

 Score = 72.4 bits (178), Expect = 5e-17
 Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 11/72 (15%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
                G       L +               KL         + +   II + P+NP  +
Sbjct: 149 QCRILGQKFESFDLFEYR-----------GEKLREKLESYLQTGQFCSIIYSNPNNPTWQ 197

Query: 61  VFTREELEVIAK 72
             T EEL +I +
Sbjct: 198 CMTDEELRIIGE 209

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389

 Score = 71.0 bits (175), Expect = 1e-16
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 11/68 (16%)

Query: 5   AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
           AGG    +               S +F+    E+E     +TK +++N+P+NP G V+ R
Sbjct: 145 AGGTVNVVET-----------FMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRR 193

Query: 65  EELEVIAK 72
           E LE + +
Sbjct: 194 EFLEGLVR 201

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385

 Score = 70.2 bits (173), Expect = 2e-16
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 11/72 (15%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M   AGGV + +    T P E         F  DP  +    + RTK +++N+P+NP G 
Sbjct: 131 MVRFAGGVVVEVE---TLPEE--------GFVPDPERVRRAITPRTKALVVNSPNNPTGA 179

Query: 61  VFTREELEVIAK 72
           V+ +E LE +A+
Sbjct: 180 VYPKEVLEALAR 191

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388

 Score = 69.8 bits (172), Expect = 3e-16
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 11/72 (15%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M + A G P+ +P   T+            FK+ P ++    + +TKL++ NTP NP G 
Sbjct: 130 MVKLAEGTPVILP---TTVET--------QFKVSPEQIRQAITPKTKLLVFNTPSNPTGM 178

Query: 61  VFTREELEVIAK 72
           V+T +E+  IA+
Sbjct: 179 VYTPDEVRAIAQ 190

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416

 Score = 68.8 bits (169), Expect = 7e-16
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 11/72 (15%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           + +A G    +              +   D++ D  E+      +TKL+I+  P NP G 
Sbjct: 144 VCKAYGIGMHFYNC-----------RPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGS 192

Query: 61  VFTREELEVIAK 72
            F+R+ +E I +
Sbjct: 193 NFSRKHVEDIVR 204

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427

 Score = 68.4 bits (168), Expect = 1e-15
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 11/72 (15%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           ++E+ G       L                +++D  +LE     +T  +I+N P NP G 
Sbjct: 158 LAESMGIEVKLYNL-----------LPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGS 206

Query: 61  VFTREELEVIAK 72
           VF++  L+ I  
Sbjct: 207 VFSKRHLQKILA 218

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533

 Score = 66.0 bits (161), Expect = 7e-15
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 9/72 (12%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           + E      + + L               D++++P E+E       K +I+  P NP  K
Sbjct: 209 IPELKDYELVEVDL---------HSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSK 259

Query: 61  VFTREELEVIAK 72
            F    L  I +
Sbjct: 260 EFDTNALNAIKQ 271

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409

 Score = 66.0 bits (162), Expect = 7e-15
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 12/72 (16%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
            ++ AG   I +             +    F + P  LES  + RTK I+L+ P NP G 
Sbjct: 142 FAKIAGVKLIPVTR-----------RMEEGFAI-PQNLESFINERTKGIVLSNPCNPTGV 189

Query: 61  VFTREELEVIAK 72
           V+ ++E+  + +
Sbjct: 190 VYGKDEMRYLVE 201

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Length = 377

 Score = 64.1 bits (157), Expect = 3e-14
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 9   PIYIPLQDTSPAEPGRHKSSAD--FKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREE 66
           P Y P      +   R     D    ++  ++E  F +  + I+L  P+NPLG VF  E 
Sbjct: 113 PAYPPFFH-LLSATQREGIFIDATGGINLHDVEKGFQAGARSILLCNPYNPLGMVFAPEW 171

Query: 67  LEVIA 71
           L  + 
Sbjct: 172 LNELC 176

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391

 Score = 62.9 bits (154), Expect = 9e-14
 Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 14/72 (19%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           +  A G VP+ +P   T+P            +  PA+           +++ +P NP G 
Sbjct: 131 ILRALGLVPVDLP---TAPEN--------RLQPVPADFAGL---DLAGLMVASPANPTGT 176

Query: 61  VFTREELEVIAK 72
           +     +  + +
Sbjct: 177 MLDHAAMGALIE 188

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546

 Score = 61.0 bits (148), Expect = 4e-13
 Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 9/72 (12%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           + E A      + +             S +++   +EL+       K+     P NP   
Sbjct: 210 IPELAQYALEEVAINADP---------SLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSV 260

Query: 61  VFTREELEVIAK 72
              +  LE +  
Sbjct: 261 KMDQRSLERVRN 272

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428

 Score = 60.4 bits (147), Expect = 6e-13
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 17/75 (22%)

Query: 4   AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELES------KFSSRTKLIILNTPHNP 57
             G   I I             +SS +FK+    ++       K + + K +IL  P NP
Sbjct: 152 RTGVQLIPIHC-----------ESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNP 200

Query: 58  LGKVFTREELEVIAK 72
           LG    ++ L+ +  
Sbjct: 201 LGTTLDKDTLKSVLS 215

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435

 Score = 59.3 bits (144), Expect = 2e-12
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 17/75 (22%)

Query: 4   AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELES------KFSSRTKLIILNTPHNP 57
             G   + I              SS  F++    LE       K + R K +++  P NP
Sbjct: 155 RTGVEIVPIHC-----------TSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNP 203

Query: 58  LGKVFTREELEVIAK 72
           LG   TR EL ++  
Sbjct: 204 LGTTMTRNELYLLLS 218

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370

 Score = 57.1 bits (139), Expect = 8e-12
 Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 19/72 (26%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
                G  P++                          LE   S +TK II+N+P NPLG+
Sbjct: 129 FIRFLGAKPVFCDF-------------------TVESLEEALSDKTKAIIINSPSNPLGE 169

Query: 61  VFTREELEVIAK 72
           V  RE  E   +
Sbjct: 170 VIDREIYEFAYE 181

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404

 Score = 56.4 bits (137), Expect = 2e-11
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 12/68 (17%)

Query: 5   AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
           A G P+ + L+               +  D ++++S+   +TKLI L  P+NP G   T+
Sbjct: 153 ADGKPVPLNLEPP------------HYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATK 200

Query: 65  EELEVIAK 72
           E  +    
Sbjct: 201 EVFDEAIA 208

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412

 Score = 56.1 bits (136), Expect = 2e-11
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 11/68 (16%)

Query: 5   AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
           AG     +PL               DF  +      +   + +++IL  P NP  +    
Sbjct: 143 AGAQVRSVPL-----------VPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVEL 191

Query: 65  EELEVIAK 72
           +  E +  
Sbjct: 192 DFFERVVA 199

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Length = 390

 Score = 55.2 bits (134), Expect = 4e-11
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 9/71 (12%)

Query: 9   PIYIPLQDTSPAEPGRHKSSAD-------FKLDPAELESKFS-SRTKLIILNTPHNPLGK 60
           P Y      +     R             +  D  +LE+  +    K+++L +P NP GK
Sbjct: 119 PAYDAFYK-AIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGK 177

Query: 61  VFTREELEVIA 71
           V+T +ELE++A
Sbjct: 178 VWTCDELEIMA 188

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* Length = 392

 Score = 55.2 bits (134), Expect = 4e-11
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 9/71 (12%)

Query: 9   PIYIPLQDTSPAEPGRHKSSAD-------FKLDPAELESKFS-SRTKLIILNTPHNPLGK 60
           P+Y P    S     R   S         F++D  +LE+    +  KL +L  PHNP G+
Sbjct: 121 PVYPPFAR-SVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGR 179

Query: 61  VFTREELEVIA 71
           V+ RE LE I 
Sbjct: 180 VWEREVLEQIG 190

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Length = 399

 Score = 54.8 bits (133), Expect = 5e-11
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 9/71 (12%)

Query: 9   PIYIPLQDTSPAEPGRHKSSAD-------FKLDPAELESKFS-SRTKLIILNTPHNPLGK 60
           P+Y P    +     R     +       + +D  +LE        K ++  +PHNP+G+
Sbjct: 121 PVYYPFFM-AIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGR 179

Query: 61  VFTREELEVIA 71
           V+ ++EL+ I 
Sbjct: 180 VWKKDELQKIK 190

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Length = 391

 Score = 54.8 bits (133), Expect = 6e-11
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 9/71 (12%)

Query: 9   PIYIPLQDTSPAEPGRHKSSAD-------FKLDPAELESKFS-SRTKLIILNTPHNPLGK 60
           P+Y           GR   S+D       + ++ A+LE K +    ++++   PHNP+G 
Sbjct: 117 PVYNMFYS-VIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGY 175

Query: 61  VFTREELEVIA 71
            ++ EE++ IA
Sbjct: 176 AWSEEEVKRIA 186

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421

 Score = 54.5 bits (132), Expect = 8e-11
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 9/71 (12%)

Query: 9   PIYIPLQDTSPAEPGRHKSSAD-------FKLDPAELESKFS-SRTKLIILNTPHNPLGK 60
           P+Y P    +                   F++D  +LE     +  K+ +L +PHNP G+
Sbjct: 151 PVYYPFAR-TIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGR 209

Query: 61  VFTREELEVIA 71
           V+  ++L  IA
Sbjct: 210 VWDNDDLIKIA 220

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430

 Score = 54.3 bits (131), Expect = 9e-11
 Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 14/73 (19%)

Query: 3   EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTK---LIILNTPHNPLG 59
               G  +                   D       L     S  K   ++ILN P+NP G
Sbjct: 155 NTRNGANLQTYP-----------IFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTG 203

Query: 60  KVFTREELEVIAK 72
              T +E+  I +
Sbjct: 204 YTPTHKEVTTIVE 216

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Length = 391

 Score = 53.7 bits (130), Expect = 2e-10
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 10/71 (14%)

Query: 9   PIYIPLQDTSPAEPGRHKSSAD--------FKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           P+Y P          R    +         + +D  ++E+K     KL IL  PHNP+G+
Sbjct: 122 PVYSPFNS-VVKNNNRELIISPLQKLENGNYIMDYEDIENKIK-DVKLFILCNPHNPVGR 179

Query: 61  VFTREELEVIA 71
           V+T++EL+ + 
Sbjct: 180 VWTKDELKKLG 190

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376

 Score = 53.3 bits (129), Expect = 2e-10
 Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 13/68 (19%)

Query: 5   AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
           A      IPL+              D   D   +        K+++LN P+NP G V   
Sbjct: 131 ASLRTFLIPLR-------------EDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADW 177

Query: 65  EELEVIAK 72
              E    
Sbjct: 178 GYFEEALG 185

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417

 Score = 50.7 bits (122), Expect = 2e-09
 Identities = 13/43 (30%), Positives = 18/43 (41%)

Query: 30  DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
            FK             T +I ++ P NP G V T EEL  + +
Sbjct: 165 QFKYHVDFEHLHIGEETGMICVSRPTNPTGNVITDEELMKLDR 207

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500

 Score = 50.2 bits (120), Expect = 3e-09
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 17/74 (22%)

Query: 5   AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPL 58
            GG  +   L             S  + L+ ++++ +           + +++  P NP 
Sbjct: 202 HGGALVPYYL-----------NESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPT 250

Query: 59  GKVFTREELEVIAK 72
           G+V   E    I K
Sbjct: 251 GQVLAEENQYDIVK 264

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498

 Score = 50.2 bits (120), Expect = 3e-09
 Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 16/73 (21%)

Query: 5   AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRT-----KLIILNTPHNPLG 59
              + +   L                + L+  EL             K++ +  P NP G
Sbjct: 201 LDAIQVNYYL-----------DEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTG 249

Query: 60  KVFTREELEVIAK 72
           +V +R+ +E +  
Sbjct: 250 QVQSRKCIEDVIH 262

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361

 Score = 49.8 bits (120), Expect = 4e-09
 Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 14/71 (19%)

Query: 2   SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKV 61
           ++  G   ++  L +             +  +D  ++ SK       +I+  P+NP G +
Sbjct: 115 AKKHGVSVVFSYLDE-------------NMCIDYEDIISKID-DVDSVIIGNPNNPNGGL 160

Query: 62  FTREELEVIAK 72
             +E+   + K
Sbjct: 161 INKEKFIHVLK 171

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427

 Score = 49.2 bits (117), Expect = 6e-09
 Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 30  DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
            +  + A   +  +    + ++ +P+NP G +  R  +    K
Sbjct: 181 VWAGNAANYVNVSNPEQYIEMVTSPNNPEGLL--RHAVIKGCK 221

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364

 Score = 48.7 bits (117), Expect = 1e-08
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 12/70 (17%)

Query: 3   EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVF 62
             +G       L           + +  ++L  A LE   +     + L TP+NP G + 
Sbjct: 116 AQSGCEIRRWSL-----------READGWQLTDAILE-ALTPDLDCLFLCTPNNPTGLLP 163

Query: 63  TREELEVIAK 72
            R  L+ IA 
Sbjct: 164 ERPLLQAIAD 173

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400

 Score = 48.0 bits (115), Expect = 2e-08
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 17/69 (24%)

Query: 5   AGGVPI-YIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFT 63
            G   I  +P                 F  +  E          ++ L +P+NP G V  
Sbjct: 138 TGAKEIIALPC-----------LQENAFFPEFPEDT-----HIDILCLCSPNNPTGTVLN 181

Query: 64  REELEVIAK 72
           +++L  I  
Sbjct: 182 KDQLRAIVH 190

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363

 Score = 45.2 bits (108), Expect = 1e-07
 Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 13/71 (18%)

Query: 2   SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKV 61
           +   G     IPL               D + D   + +    +T ++ +  P+NP G  
Sbjct: 125 ALIEGAEVREIPLLQ-------------DGEHDLEGMLNAIDEKTTIVWICNPNNPTGNY 171

Query: 62  FTREELEVIAK 72
               +++    
Sbjct: 172 IELADIQAFLD 182

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444

 Score = 44.7 bits (106), Expect = 2e-07
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 9/71 (12%)

Query: 5   AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---RTKLIILNTPHNPLGKV 61
           A  +P    +  T   E G  K    +++D   LE+  +    R   I  + P NP G V
Sbjct: 169 AAVLPHIDEV--THDGEEGFFK----YRVDFEALENLPALKEGRIGAICCSRPTNPTGNV 222

Query: 62  FTREELEVIAK 72
            T EE+  +A+
Sbjct: 223 LTDEEMAHLAE 233

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396

 Score = 44.1 bits (105), Expect = 4e-07
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 12/64 (18%)

Query: 5   AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
            GG   +                   F  D   +  +   RTKL+ + +P+NP G V   
Sbjct: 140 GGGEIHFANCPAP------------SFNPDWRSISEEVWKRTKLVFVCSPNNPSGSVLDL 187

Query: 65  EELE 68
           +  +
Sbjct: 188 DGWK 191

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432

 Score = 43.4 bits (103), Expect = 7e-07
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 30  DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
            F  D + +      RT +I   +P+NP G   TRE+L  + +
Sbjct: 188 GFFPDLSTVG-----RTDIIFFCSPNNPTGAAATREQLTQLVE 225

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376

 Score = 43.3 bits (103), Expect = 8e-07
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 14/64 (21%)

Query: 5   AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR 64
                + +PL               DF      L  K      L+ILN+P+NP G+  + 
Sbjct: 128 IKAKSLLMPL-----------TKENDFTPS---LNEKELQEVDLVILNSPNNPTGRTLSL 173

Query: 65  EELE 68
           EEL 
Sbjct: 174 EELI 177

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337

 Score = 42.5 bits (101), Expect = 1e-06
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 15/70 (21%)

Query: 3   EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVF 62
             +G     I L D             D  LDP +L     SR   ++L  P NP G+  
Sbjct: 108 AVSGLRHFEIGLTD-------------DLLLDPNDLAQ--VSRDDCVVLANPSNPTGQAL 152

Query: 63  TREELEVIAK 72
           +  EL+ + +
Sbjct: 153 SAGELDQLRQ 162

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365

 Score = 42.5 bits (101), Expect = 1e-06
 Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 13/71 (18%)

Query: 2   SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKV 61
           ++  G                           +  +L        KLI L  P+NPLG+ 
Sbjct: 123 AKQCGAKCYKTQSIT-------------HNLDEFKKLYETHKDEIKLIFLCLPNNPLGEC 169

Query: 62  FTREELEVIAK 72
               E     K
Sbjct: 170 LDASEATEFIK 180

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369

 Score = 42.2 bits (100), Expect = 2e-06
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 14/72 (19%)

Query: 2   SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLD-PAELESKFSSRTKLIILNTPHNPLGK 60
           ++      I +                ADF++D    LE   + +  ++ + TP+NP G 
Sbjct: 133 AKGTHTEFIAVSRG-------------ADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGD 179

Query: 61  VFTREELEVIAK 72
           V + +++E I  
Sbjct: 180 VTSLDDVERIIN 191

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335

 Score = 41.4 bits (98), Expect = 3e-06
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 18/71 (25%)

Query: 2   SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKV 61
           ++A G   + +PL               D ++    +         ++ +  P+NP G V
Sbjct: 113 AKAVGAKFLEVPLTK-------------DLRIPEVNVG-----EGDVVFIPNPNNPTGHV 154

Query: 62  FTREELEVIAK 72
           F REE+E I K
Sbjct: 155 FEREEIERILK 165

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367

 Score = 41.0 bits (97), Expect = 4e-06
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 29  ADFKLD-PAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
           ADF LD  A L +    +  ++ L  P+NP G +F   ++E I +
Sbjct: 140 ADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVR 184

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449

 Score = 40.7 bits (96), Expect = 7e-06
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 30  DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
            F  D ++ +     RT +I   +P+NP G   TR +L  +  
Sbjct: 199 HFFPDLSKAK-----RTDIIFFCSPNNPTGAAATRAQLTELVN 236

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350

 Score = 40.6 bits (96), Expect = 7e-06
 Identities = 9/70 (12%), Positives = 18/70 (25%), Gaps = 20/70 (28%)

Query: 3   EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVF 62
                   + P  +                    ++     S      L  P+NP G++ 
Sbjct: 107 RMYEHEVCFYPSNE--------------------DIGEADFSNMDFCWLCNPNNPDGRLL 146

Query: 63  TREELEVIAK 72
            R E+  +  
Sbjct: 147 QRTEILRLLN 156

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356

 Score = 39.9 bits (94), Expect = 1e-05
 Identities = 8/44 (18%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 29  ADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
            +++LD   +  K     K++ + +P+NP G++   ++   + +
Sbjct: 131 DNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLE 173

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360

 Score = 39.8 bits (94), Expect = 1e-05
 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 17/71 (23%)

Query: 2   SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKV 61
           +E  G       L               DF++             K+  L TP+ PLG  
Sbjct: 123 AEVQGARVRTFGLTG-------------DFRIAGFPERY----EGKVFFLTTPNAPLGPS 165

Query: 62  FTREELEVIAK 72
           F  E ++ +A+
Sbjct: 166 FPLEYIDELAR 176

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354

 Score = 38.7 bits (91), Expect = 3e-05
 Identities = 11/69 (15%), Positives = 28/69 (40%), Gaps = 15/69 (21%)

Query: 2   SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRT--KLIILNTPHNPLG 59
           ++ AG     + + D             ++  D   L++  ++ +   ++ L  P+NP G
Sbjct: 109 AKIAGMKVTKVKMLD-------------NWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTG 155

Query: 60  KVFTREELE 68
            +   + +E
Sbjct: 156 TITPADVIE 164

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* Length = 398

 Score = 35.2 bits (82), Expect = 5e-04
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 34  DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
           D   LE+  +  T++I   +P NP   +     +  IA+
Sbjct: 139 DLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIAR 177

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* Length = 398

 Score = 35.2 bits (82), Expect = 6e-04
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 34  DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
            P E+ +     TK++ + TP NP   +   E +  IA 
Sbjct: 138 KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAH 176

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* Length = 389

 Score = 34.8 bits (81), Expect = 6e-04
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 34  DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
           D  ++++ +   TK++ L +P NP  KV   + + V+  
Sbjct: 133 DVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCH 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	72
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.31
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.24
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.22
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.21
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.21
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.2
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.19
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.18
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.17
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.17
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.16
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.14
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.14
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.13
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.13
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.12
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.12
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.11
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.11
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.11
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.11
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.11
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.1
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.1
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.1
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.09
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.09
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.09
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.09
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.09
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.09
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.08
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.08
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.08
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.07
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.07
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.07
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.07
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.07
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.07
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.06
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.05
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.05
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.04
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.03
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.03
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.03
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.03
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.02
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.02
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.02
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.02
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.02
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.02
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.01
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.01
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.0
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.0
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.0
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.0
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	98.99
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	98.99
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	98.98
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	98.98
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	98.97
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	98.97
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	98.97
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	98.97
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	98.97
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	98.97
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	98.96
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	98.96
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	98.96
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	98.96
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	98.95
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	98.95
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	98.94
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	98.94
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	98.93
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	98.93
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	98.92
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	98.92
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	98.91
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	98.91
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	98.9
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	98.89
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	98.88
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	98.88
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	98.88
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	98.87
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	98.87
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	98.87
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	98.87
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	98.84
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	98.82
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	98.82
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	98.81
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	98.8
3pj0_A	359	LMO0305 protein; structural genomics, joint center	98.8
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	98.79
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	98.77
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	98.25
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	98.76
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	98.76
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	98.76
1vp4_A	425	Aminotransferase, putative; structural genomics, j	98.75
1iug_A	352	Putative aspartate aminotransferase; wild type, py	98.75
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	98.74
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	98.74
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	98.73
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	98.73
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	98.73
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	98.73
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	98.72
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	98.72
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	98.72
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	98.7
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	98.7
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	98.7
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	98.69
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	98.69
1svv_A	359	Threonine aldolase; structural genomics, structura	98.69
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	98.68
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	98.66
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	98.66
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	98.64
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	98.64
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	98.64
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	98.64
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	98.63
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	98.63
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	98.62
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	98.61
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	98.61
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	98.59
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	98.59
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	98.55
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	98.55
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	98.55
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	98.54
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	98.54
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	98.54
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	98.54
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	98.53
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	98.52
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	98.51
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	98.44
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	98.43
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	98.42
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	98.42
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	98.41
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	98.4
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	98.39
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	98.38
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	98.37
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	98.37
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	98.35
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	98.34
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	98.34
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	98.31
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	98.31
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	98.28
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	98.23
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	98.22
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	98.21
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	98.2
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	98.16
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	98.15
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	98.14
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	98.11
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	98.08
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	98.07
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	98.05
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	98.03
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	98.03
1o69_A	394	Aminotransferase; structural genomics, unknown fun	98.02
2fnu_A	375	Aminotransferase; protein-product complex, structu	98.02
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	98.0
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	98.0
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	97.98
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	97.97
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	97.94
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	97.88
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	97.86
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	97.77
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	97.77
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	97.7
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	97.68
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	97.67
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	97.66
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	97.62
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	97.62
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	97.57
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	97.47
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	97.19
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	97.13
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	97.02
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	97.01
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	96.95
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	96.93
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	96.91
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	96.69
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	96.67
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	96.51
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	96.48
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	96.41
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	96.17
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	96.14
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	96.14
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	96.01
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	95.94
1z7d_A	433	Ornithine aminotransferase; structural genomics co	95.8
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	95.75
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	95.72
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	95.66
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	95.6
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	95.55
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	95.31
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	95.08
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	94.84
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	94.21
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	94.07
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	93.9
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	93.79
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	93.73
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	93.52
3hmu_A	472	Aminotransferase, class III; structural genomics,	93.19
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	92.75
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	92.75
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	90.96
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	87.74

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.31  E-value=2e-12  Score=86.43  Aligned_cols=58  Identities=34%  Similarity=0.623  Sum_probs=50.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.++           +|.+|++++++++.+++|+|++++||||||.+++.+++++|+
T Consensus       133 ~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~l~~i~  190 (385)
T 1b5p_A          133 RFAGGVVVEVETLPEE-----------GFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALA  190 (385)
T ss_dssp             HHTTCEEEEEECCGGG-----------TTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEeecCccc-----------CCCCCHHHHHHhcCCCCEEEEEeCCCCCCCCCcCHHHHHHHH
Confidence            5679999999997533           688999999999988899999999999999999988887775

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.24  E-value=1.2e-11  Score=82.46  Aligned_cols=57  Identities=30%  Similarity=0.623  Sum_probs=50.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.+            +|.+|+++|++++.+++++|++++||||||.+++.+++.+|+
T Consensus       142 ~~~g~~~~~v~~~~~------------~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~  198 (398)
T 3ele_A          142 NAAGARLVEVPADTE------------HFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLS  198 (398)
T ss_dssp             HHTTCEEEEECCCTT------------TSSCCHHHHHHTCCTTEEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEEecCCc------------CCcCCHHHHHHHhCcCCCEEEEcCCCCCCCCCCCHHHHHHHH
Confidence            567999999998753            688999999999988999999999999999999988888664

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.22  E-value=6.6e-12  Score=87.62  Aligned_cols=58  Identities=21%  Similarity=0.365  Sum_probs=51.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-----CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-----RTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-----~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.+++++++           +|.+|+++|++++++     ++|+|+++|||||||.+++.+++++|+
T Consensus       199 ~~~g~~~v~~~~~~~~-----------~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~  261 (498)
T 3ihj_A          199 SELDAIQVNYYLDEEN-----------CWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVI  261 (498)
T ss_dssp             HHTTCEEEEEECBGGG-----------TTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEeeccccc-----------cCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHH
Confidence            5679999999998764           799999999999865     589999999999999999999988875

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.21  E-value=1.2e-11  Score=86.07  Aligned_cols=59  Identities=19%  Similarity=0.417  Sum_probs=52.2

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.++           +|.+|+++|++++.+      ++|+|+++|||||||.+++.+++.+|+
T Consensus       199 ~~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~  263 (500)
T 3tcm_A          199 IALHGGALVPYYLNEST-----------GWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIV  263 (500)
T ss_dssp             HHHTTCEEEEEECBTTT-----------TSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHHcCCEEEEEeccccc-----------CCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHH
Confidence            35679999999998764           799999999999875      789999999999999999999998885

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.21  E-value=2.7e-11  Score=79.84  Aligned_cols=57  Identities=19%  Similarity=0.321  Sum_probs=51.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             +|.+|++++++++++++++|++++|+||||.+++.+++.++++
T Consensus       126 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~~l~~  182 (363)
T 3ffh_A          126 LIEGAEVREIPLLQ-------------DGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAFLD  182 (363)
T ss_dssp             HHHTCEEEEEECCT-------------TSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHT
T ss_pred             HHcCCEEEEecCCC-------------CCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHHHHHH
Confidence            45789999999875             5778999999999889999999999999999999999999874

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.20  E-value=2.7e-11  Score=79.45  Aligned_cols=57  Identities=21%  Similarity=0.359  Sum_probs=51.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc--CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS--SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             +|.+|+++++++++  +++++|++++|+||||.+++.+++.+|++
T Consensus       110 ~~~g~~~~~~~~~~-------------~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~  168 (354)
T 3ly1_A          110 KIAGMKVTKVKMLD-------------NWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIA  168 (354)
T ss_dssp             HHTTCEEEEECCCT-------------TSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             HHcCCEEEEecCCC-------------CCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHHHHHH
Confidence            56789999999875             67799999999997  78999999999999999999999998863

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.19  E-value=2.6e-11  Score=85.79  Aligned_cols=56  Identities=16%  Similarity=0.214  Sum_probs=49.7

Q ss_pred             CCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         5 ~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      .|++++.++++.++           +|.+|+++|++++.+++++|++||||||||.+++.+++++|+
T Consensus       216 ~g~~~~~v~~~~~~-----------~~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~  271 (546)
T 2zy4_A          216 YALEEVAINADPSL-----------NWQYPDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVR  271 (546)
T ss_dssp             SCCEEEEEECBGGG-----------TTBCCHHHHGGGGSTTEEEEEEESSCSSSCBCCCHHHHHHHH
T ss_pred             CCcEEEEEecCccc-----------CCCCCHHHHHHhhCCCCeEEEEECCCCCCCccCCHHHHHHHH
Confidence            47899999987654           789999999988888899999999999999999999988775

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.18  E-value=3.8e-11  Score=79.26  Aligned_cols=56  Identities=29%  Similarity=0.554  Sum_probs=50.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.             +|.+|++++++++++ ++++|++++||||||.+++.+++.+|+
T Consensus       127 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~  183 (367)
T 3euc_A          127 QFAGLEFVGVPLRA-------------DFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIV  183 (367)
T ss_dssp             HTTTCEEEEEECCT-------------TSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCeEEEecCCC-------------CCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHH
Confidence            56799999999876             677899999999987 899999999999999999999888875

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.17  E-value=2.4e-11  Score=83.24  Aligned_cols=60  Identities=17%  Similarity=0.170  Sum_probs=49.6

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc--CCccEEEEeCC-CCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS--SRTKLIILNTP-HNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~i~l~~P-~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.+|+..++           +|.+|+++|++++.  ++++++++++| |||||.+++.+++++|++
T Consensus       139 ~~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~  201 (405)
T 3k7y_A          139 IESRGFNLKYINFFDYN-----------LIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIE  201 (405)
T ss_dssp             HHTTTCEEEEECCEETT-----------TTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHH
T ss_pred             HHHcCCeEEEEeccccc-----------cCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence            46789999999984332           69999999999885  35688888766 899999999999998863

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.17  E-value=2.8e-11  Score=80.39  Aligned_cols=55  Identities=22%  Similarity=0.471  Sum_probs=48.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.             +|.+|+++++++++ ++++|++++||||||.+++.+++.+|+
T Consensus       118 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~  172 (356)
T 1fg7_A          118 ETIGVECRTVPTLD-------------NWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLL  172 (356)
T ss_dssp             HHHTCEEEECCCCT-------------TSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEeeCCC-------------CCCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence            45688999998863             67789999999888 899999999999999999999998876

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.16  E-value=3.2e-11  Score=79.77  Aligned_cols=58  Identities=24%  Similarity=0.374  Sum_probs=49.8

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.++           +|.+|++++++++++++++|++++|+||||.+++.+++++|+
T Consensus       123 ~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~  180 (375)
T 3op7_A          123 KSLGAEVDLWQIEEEN-----------GWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELV  180 (375)
T ss_dssp             HHTTCEEEEEEEEGGG-----------TTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEEeccccC-----------CCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHH
Confidence            4678999999987543           788999999999998999999999999999999966655553

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.14  E-value=2.9e-11  Score=79.77  Aligned_cols=57  Identities=25%  Similarity=0.288  Sum_probs=50.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.+++ ...           +| +|++++++++++++++|++++|+||||.+++.+++.++++
T Consensus       124 ~~~g~~~~~v~~-~~~-----------~~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~  180 (365)
T 3get_A          124 KQCGAKCYKTQS-ITH-----------NL-DEFKKLYETHKDEIKLIFLCLPNNPLGECLDASEATEFIK  180 (365)
T ss_dssp             HHHTCEEEECSS-SSC-----------CH-HHHHHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             HHcCCEEEEEec-CCC-----------CC-CCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCHHHHHHHHH
Confidence            457899999998 222           78 9999999999989999999999999999999999998863

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.14  E-value=1.6e-11  Score=81.60  Aligned_cols=57  Identities=23%  Similarity=0.355  Sum_probs=49.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++..            +|.+|++++++++.+++++|++++||||||.+++.+++++|+
T Consensus       138 ~~~g~~~~~v~~~~~------------g~~~d~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~  194 (396)
T 3jtx_A          138 LLGGGEIHFANCPAP------------SFNPDWRSISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVF  194 (396)
T ss_dssp             HHTTCEEEEEECCTT------------TCCCCGGGSCHHHHHTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEeecCCC------------CCccCHHHHHHhhccCcEEEEEECCCCCCCCcCCHHHHHHHH
Confidence            567999999999432            688899999998888899999999999999999999977765

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.13  E-value=6.4e-11  Score=79.08  Aligned_cols=59  Identities=20%  Similarity=0.190  Sum_probs=48.4

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc---CCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS---SRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.+++....           +|.+|++.+++.+.   ++++++++++||||||.+++.+++++|+
T Consensus       140 ~~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~  201 (401)
T 7aat_A          140 FRDAGLQLQAYRYYDPK-----------TCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELA  201 (401)
T ss_dssp             HHHTTCEEEEEECEETT-----------TTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHH
T ss_pred             HHHcCCeeEeeeeeccc-----------cCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Confidence            35678999999986533           68899997766653   5789999999999999999999988876

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.13  E-value=1.2e-10  Score=78.64  Aligned_cols=58  Identities=24%  Similarity=0.475  Sum_probs=47.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.++           +|.+|++++++++..      ++++|++++||||||.+++.+++++|+
T Consensus       151 ~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~  214 (428)
T 1iay_A          151 WRTGVQLIPIHCESSN-----------NFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVL  214 (428)
T ss_dssp             TTTCCEEEEECCCTTT-----------TTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HhcCCEEEEeecCCcc-----------CCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHH
Confidence            3578999999987543           688999999988753      689999999999999999977776664

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.12  E-value=8.8e-11  Score=76.45  Aligned_cols=56  Identities=32%  Similarity=0.538  Sum_probs=48.7

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.++++.             +|.+|+++++++  .+++++++++||||||.+++.+++.++++
T Consensus       107 ~~~~g~~~~~v~~~~-------------~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~~~~~l~~l~~  162 (337)
T 3p1t_A          107 IAVSGLRHFEIGLTD-------------DLLLDPNDLAQV--SRDDCVVLANPSNPTGQALSAGELDQLRQ  162 (337)
T ss_dssp             HTTSCCEEEEECBCT-------------TSSBCHHHHTTC--CTTEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             HHHcCCEEEEecCCC-------------CCCCCHHHHHhh--cCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            356799999999875             678999999876  46899999999999999999999999873

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.12  E-value=6.6e-11  Score=78.61  Aligned_cols=58  Identities=38%  Similarity=0.718  Sum_probs=49.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.++           +|.+|++++++++.+++++|++++|+||||.+++.+.+++|+
T Consensus       129 ~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~l~  186 (389)
T 1gd9_A          129 ILAGGKPVEVPTYEED-----------EFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIA  186 (389)
T ss_dssp             HHHTCEEEEEECCGGG-----------TTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHCCCEEEEeccCCcc-----------CCCCCHHHHHHhcCcCceEEEEECCCCCCCcCCCHHHHHHHH
Confidence            4568899999987532           578899999999988899999999999999999977777665

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.11  E-value=8.4e-11  Score=78.07  Aligned_cols=58  Identities=36%  Similarity=0.740  Sum_probs=49.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.+.           +|.+|+++|++++.+++++|++++|+||||.+++.+.+++|+
T Consensus       132 ~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~  189 (388)
T 1j32_A          132 KLAEGTPVILPTTVET-----------QFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIA  189 (388)
T ss_dssp             HHTTCEEEEECCCGGG-----------TTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEecCCccc-----------CCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHH
Confidence            4578999999987532           678999999999988899999999999999999977777664

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.11  E-value=6.7e-11  Score=79.30  Aligned_cols=58  Identities=29%  Similarity=0.444  Sum_probs=49.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.++           +|.+|+++|++++.++++++++++|+||||.+++.+++++|+
T Consensus       146 ~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~  203 (416)
T 1bw0_A          146 KAYGIGMHFYNCRPEN-----------DWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIV  203 (416)
T ss_dssp             HHTTCEEEEEEEEGGG-----------TTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCcEEEEeecCccc-----------CCCCCHHHHHHHhccCCeEEEEeCCCCCCCcccCHHHHHHHH
Confidence            4578999999986532           588999999999988899999999999999999977666654

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.11  E-value=9.1e-11  Score=78.75  Aligned_cols=59  Identities=17%  Similarity=0.167  Sum_probs=48.1

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc---CCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS---SRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.+++..++           +|.+|++++++++.   ..++++++++||||||.+++.+++++|+
T Consensus       148 ~~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~  209 (409)
T 4eu1_A          148 FAKAGMELTPYSYYDPA-----------TKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVC  209 (409)
T ss_dssp             HHHTTCEEEEECCEETT-----------TTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHH
T ss_pred             HHHcCCeEEEEEeecCc-----------CCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHH
Confidence            35679999999985433           78999999999885   3456777899999999999999977765

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.11  E-value=8.4e-11  Score=79.40  Aligned_cols=59  Identities=15%  Similarity=0.194  Sum_probs=50.1

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc---CCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS---SRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.+++....           +|.+|++.+++.+.   ++++++++++||||||.+++.+++++|+
T Consensus       160 ~~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~  221 (420)
T 4f4e_A          160 FDMAGFEVVAYPYYDAK-----------TNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVV  221 (420)
T ss_dssp             HHHTTCCEEEEECEETT-----------TTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred             HHHcCCeEEEeeeeccc-----------cCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHH
Confidence            35678999999984322           78899999999987   6789999999999999999999888875

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.11  E-value=1.4e-10  Score=77.06  Aligned_cols=57  Identities=35%  Similarity=0.627  Sum_probs=49.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.+            +|.+|+++|++++.+++++|++++|+||||.+++.+++++|+
T Consensus       133 ~~~g~~~~~v~~~~~------------~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~  189 (386)
T 1u08_A          133 ALSGGIVKRMALQPP------------HFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALW  189 (386)
T ss_dssp             HHTTCEEEEEECCTT------------TCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEeecCcc------------cCcCCHHHHHHhhcccCEEEEEeCCCCCCCccCCHHHHHHHH
Confidence            457899999998753            577899999999988899999999999999999987776664

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.10  E-value=1.3e-10  Score=76.03  Aligned_cols=56  Identities=21%  Similarity=0.309  Sum_probs=50.9

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..|++++.++++.             ++.+|+++|++++.+++++|++++|+||||.+++.++|.++|+
T Consensus       110 ~~g~~~~~v~~~~-------------~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~  165 (382)
T 4hvk_A          110 KQGFEVEYIPVGK-------------YGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLA  165 (382)
T ss_dssp             HTTCEEEEECBCT-------------TSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHS
T ss_pred             hcCCEEEEeccCC-------------CCCcCHHHHHHHhccCceEEEEECCCCCceeeCCHHHHHHHHH
Confidence            3689999999875             6678999999999989999999999999999999999999875

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.10  E-value=1e-10  Score=78.16  Aligned_cols=58  Identities=31%  Similarity=0.481  Sum_probs=49.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.++           +|.+|+++|++++.+++++|++++|+||||.+++.+++.+|+
T Consensus       143 ~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~  200 (389)
T 1o4s_A          143 ILAGGTVNVVETFMSK-----------NFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLV  200 (389)
T ss_dssp             HHTTCEEEEEECCGGG-----------TTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEEecCCcc-----------CCCCCHHHHHHhcccCceEEEEcCCCCCCCCCCCHHHHHHHH
Confidence            4578999999987532           678999999999988899999999999999999977776664

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.10  E-value=6.4e-11  Score=80.37  Aligned_cols=58  Identities=29%  Similarity=0.460  Sum_probs=50.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.+++..++           +|.+|++++++++.+++++|++++||||||.+++.+++++|+
T Consensus       160 ~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~  217 (427)
T 3dyd_A          160 ESMGIEVKLYNLLPEK-----------SWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKIL  217 (427)
T ss_dssp             HHTTCEEEEEEEEGGG-----------TTEECHHHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEEeccccc-----------CCCCCHHHHHHHhccCCCEEEEECCCCCCCCCCCHHHHHHHH
Confidence            5678999999987643           789999999999988899999999999999999977666654

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.09  E-value=1.2e-10  Score=78.13  Aligned_cols=68  Identities=53%  Similarity=0.915  Sum_probs=51.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++... .++|......+|.+|++++++++++++++|++++||||||.+++.+++++|+
T Consensus       133 ~~~g~~~~~~~~~~~~-~~~G~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~  200 (422)
T 3fvs_A          133 MMAGGRPVFVSLKPGP-IQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVA  200 (422)
T ss_dssp             HHTTCEEEEEECBCCC-CCSSSCCBGGGSBCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEEeccccc-ccccccccccCCCCCHHHHHhhcCCCceEEEECCCCCCCCcCCCHHHHHHHH
Confidence            4578999999987510 0011111123788999999999988999999999999999999887777765

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.09  E-value=1.7e-10  Score=76.63  Aligned_cols=56  Identities=14%  Similarity=0.115  Sum_probs=50.9

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..|++++.++++.             ++.+|+++|++++.+++++|++++|+||||.+++.++|.++|+
T Consensus       131 ~~g~~~~~v~~~~-------------~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~  186 (400)
T 3vax_A          131 GRGFEVDFLTPGP-------------SGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLR  186 (400)
T ss_dssp             TTTCEEEEECCCT-------------TCCCCHHHHHTTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHT
T ss_pred             hcCCeEEEEccCC-------------CCCcCHHHHHHhcCCCceEEEEECCCCCceeeCcHHHHHHHHH
Confidence            4689999999875             6778999999999989999999999999999999999999875

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.09  E-value=1.4e-10  Score=78.53  Aligned_cols=57  Identities=28%  Similarity=0.511  Sum_probs=50.0

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ..|++++.++++..+           .|.+|+++|++++.+      ++++|++++|+||||.+++.+++++|+
T Consensus       155 ~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~  217 (435)
T 3piu_A          155 RTGVEIVPIHCTSSN-----------GFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLL  217 (435)
T ss_dssp             TTCCEEEEEECCGGG-----------TSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             hcCCEEEEeeCCCcc-----------CCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHH
Confidence            579999999998654           688999999998865      789999999999999999998888775

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.09  E-value=1.9e-10  Score=75.69  Aligned_cols=56  Identities=21%  Similarity=0.309  Sum_probs=50.4

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..|++++.++++.             ++.+|+++|++++++++++|++++|+||||.+++.++|.++|+
T Consensus       110 ~~g~~~~~v~~~~-------------~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  165 (382)
T 4eb5_A          110 KQGFEVEYIPVGK-------------YGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLA  165 (382)
T ss_dssp             TTTCEEEEECBCT-------------TSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHT
T ss_pred             hCCcEEEEeccCC-------------CCccCHHHHHHHhcCCCeEEEEeccCCCccccCCHHHHHHHHH
Confidence            4699999999874             5678999999999888999999999999999999999999874

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.09  E-value=1.9e-10  Score=80.87  Aligned_cols=59  Identities=25%  Similarity=0.426  Sum_probs=51.2

Q ss_pred             cccCCCeEEEeeCCC--CCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQD--TSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~--~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.  +.           +|.+|+++|++++.+++++|++++||||||.+++.+++.+|+
T Consensus       210 ~~~~g~~~~~v~~~~~~~~-----------~~~~d~~~l~~~l~~~~k~v~l~~p~NPtG~~~~~~~l~~l~  270 (533)
T 3f6t_A          210 PELKDYELVEVDLHSYEKN-----------DWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNALNAIK  270 (533)
T ss_dssp             GGGGGSEEEEECCCEETTT-----------TSEECHHHHHHHSCTTEEEEEEESSCTTTCBCCCHHHHHHHH
T ss_pred             HHHcCCeEEEEEecCCccc-----------CCCCCHHHHHHHhCCCCeEEEEeCCCCCCccccCHHHHHHHH
Confidence            456788999999864  32           789999999999988999999999999999999999877765

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.08  E-value=4.5e-11  Score=80.48  Aligned_cols=57  Identities=26%  Similarity=0.242  Sum_probs=49.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh-cCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF-SSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++..            +|.+|+++|++++ .+++++|++++||||||.+++.+++++|+
T Consensus       151 ~~~g~~~~~v~~~~~------------~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~  208 (437)
T 3g0t_A          151 RILGQKFESFDLFEY------------RGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIG  208 (437)
T ss_dssp             HHHTCCCEEEEGGGG------------CTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEEeecCC------------CCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHH
Confidence            456889999998732            6789999999999 77899999999999999999988877765

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.08  E-value=1e-10  Score=77.74  Aligned_cols=58  Identities=17%  Similarity=0.237  Sum_probs=49.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc---CCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS---SRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.+++..++           +|.+|++++++++.   ++++++++++||||||.+++.+++++|+
T Consensus       139 ~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~  199 (397)
T 3fsl_A          139 AGAGFEVSTYPWYDEA-----------TNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVI  199 (397)
T ss_dssp             HHTTCCEEEECCEETT-----------TTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCceEEEeeeecc-----------CCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHH
Confidence            5678999999984332           78899999999987   5788999999999999999999887765

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.08  E-value=1.5e-10  Score=76.03  Aligned_cols=57  Identities=23%  Similarity=0.294  Sum_probs=50.7

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             +|.+|+++|++++.+++++|++++|+||||.+++.++|.++|+
T Consensus       110 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~  166 (384)
T 1eg5_A          110 SMKGFKVKYVPVDS-------------RGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVK  166 (384)
T ss_dssp             HHTTCEEEECCBCT-------------TSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHH
T ss_pred             HhcCCEEEEEccCC-------------CCccCHHHHHHHhCCCCeEEEEECCCCCcccccCHHHHHHHHH
Confidence            45689999999874             6778999999999888999999999999999999999998873

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.07  E-value=9.1e-11  Score=78.83  Aligned_cols=58  Identities=21%  Similarity=0.276  Sum_probs=49.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.++           +|.+|+++|++++.+++++|++++||||||.+++.+++++|+
T Consensus       141 ~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~i~~~~~~v~l~~p~nptG~~~~~~~l~~l~  198 (412)
T 2x5d_A          141 VIAGAQVRSVPLVPGI-----------DFFNELERAIRESIPKPRMMILGFPSNPTAQCVELDFFERVV  198 (412)
T ss_dssp             HHHTCEEEEEECSTTS-----------CHHHHHHHHHHTEESCCSEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEeecCCcc-----------CCCCCHHHHHHhcccCceEEEECCCCCCCCCcCCHHHHHHHH
Confidence            4568899999987642           677899999999988899999999999999999988777665

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.07  E-value=1.7e-10  Score=78.75  Aligned_cols=68  Identities=40%  Similarity=0.779  Sum_probs=50.8

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.++.... ......+|.+|+++|++++.+++++|++++||||||.+++.+++++|+
T Consensus       160 ~~~g~~~~~v~~~~~~~~~~-~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~  227 (447)
T 3b46_A          160 ELCGGKVVYVPINPPKELDQ-RNTRGEEWTIDFEQFEKAITSKTKAVIINTPHNPIGKVFTREELTTLG  227 (447)
T ss_dssp             HHTTCEEEEEEEECCGGGGT-SCBCSTTSEECHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEEeCCCcccccc-ccccccCcccCHHHHHHhhccCCeEEEEeCCCCCCCcccCHHHHHHHH
Confidence            45789999999865310000 000112588999999999988899999999999999999988888775

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.07  E-value=1.9e-10  Score=76.30  Aligned_cols=57  Identities=21%  Similarity=0.385  Sum_probs=49.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++.+.             +|.+|++++++++.+ ++++|++++|+||||.+++.+++.++++
T Consensus       134 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~  191 (369)
T 3cq5_A          134 KGTHTEFIAVSRGA-------------DFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIIN  191 (369)
T ss_dssp             HHTTCEEEEEECCT-------------TSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             HHcCCEEEEecCCc-------------CCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            45789999999653             677899999999876 8999999999999999999999998863

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.07  E-value=1.7e-10  Score=77.49  Aligned_cols=58  Identities=21%  Similarity=0.422  Sum_probs=49.2

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC----Ccc-EEEEeCC-CCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS----RTK-LIILNTP-HNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~----~~~-~i~l~~P-~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.+++..+            +|.+|+++|++++.+    +++ ++++++| |||||.+++.+++.+|+
T Consensus       143 ~~~~g~~~~~v~~~~~------------~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~  206 (418)
T 3rq1_A          143 CSDTGRTLVTYSLFDE------------HNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSIL  206 (418)
T ss_dssp             HHHTTCEEEEECSBCT------------TSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred             HHHcCCEEEEEeeeCC------------CCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHH
Confidence            3567999999998653            578899999998864    666 7999999 99999999999999876

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.07  E-value=2.6e-10  Score=75.88  Aligned_cols=63  Identities=29%  Similarity=0.451  Sum_probs=49.6

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.+++.....       ...+|.+|+++|++++.+++++|++++|+||||.+++.+++++|+
T Consensus       143 ~~~~g~~~~~~~~~~~~~-------~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~  205 (407)
T 3nra_A          143 VEFFEGEMVPVQLDYVSA-------DETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIA  205 (407)
T ss_dssp             HHHTTCEEEEEEBCCCSS-------CCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHHcCCEEEEeecccccc-------cCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCCCcccCHHHHHHHH
Confidence            356789999999853100       001788999999999988899999999999999999977766654

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.06  E-value=1.5e-10  Score=77.70  Aligned_cols=58  Identities=29%  Similarity=0.529  Sum_probs=49.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.++           +|.+|+++|++++.+++++|++++|+||||.+++.+.+.+|+
T Consensus       143 ~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~  200 (406)
T 1xi9_A          143 KFYGGKPVEYRTIEEE-----------DWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEIL  200 (406)
T ss_dssp             HHTTCEEEEEEEEGGG-----------TSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEeecCCCc-----------CCcCCHHHHHHhhCcCceEEEEECCCCCCCCCcCHHHHHHHH
Confidence            4578999999987532           688999999999988899999999999999999977776664

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.05  E-value=2e-10  Score=75.88  Aligned_cols=57  Identities=35%  Similarity=0.678  Sum_probs=49.9

Q ss_pred             ccCCCeEEEeeCC--CCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQ--DTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~--~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++  .++           .|.+|++++++++.+ +++|++++|+||||.+++.+++++|+
T Consensus       132 ~~~g~~~~~~~~~~~~~~-----------~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~  190 (391)
T 4dq6_A          132 KNNNRELIISPLQKLENG-----------NYIMDYEDIENKIKD-VKLFILCNPHNPVGRVWTKDELKKLG  190 (391)
T ss_dssp             HHTTCEEEECCCEECTTS-----------CEECCHHHHHHHCTT-EEEEEEESSBTTTTBCCCHHHHHHHH
T ss_pred             HHcCCeEEeeeeeecCCC-----------ceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCcCHHHHHHHH
Confidence            4678999999987  332           789999999999987 99999999999999999998888875

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.05  E-value=1.5e-10  Score=76.49  Aligned_cols=59  Identities=29%  Similarity=0.536  Sum_probs=50.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++..+          +.|.+|+++|++++. +++++|++++|+||||.+++.+++++|+
T Consensus       127 ~~~g~~~~~~~~~~~~----------~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~  186 (391)
T 3dzz_A          127 EGNGRRVISSDLIYEN----------SKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIA  186 (391)
T ss_dssp             HHTTCEEEECCCEEET----------TEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHH
T ss_pred             HHcCCEEEEeeeeecC----------CceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHH
Confidence            4678999999986311          178899999999997 7899999999999999999998888775

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.04  E-value=1.9e-10  Score=76.66  Aligned_cols=59  Identities=25%  Similarity=0.456  Sum_probs=48.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.++          +.|.+|+++|+++++ +++++|++++|+||||.+++.+++++|+
T Consensus       131 ~~~g~~~~~~~~~~~~----------g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~  190 (399)
T 1c7n_A          131 KNQERKIIECELLEKD----------GYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIK  190 (399)
T ss_dssp             HTTTCEEEECCCEEET----------TEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHH
T ss_pred             HHcCCEEEecccccCC----------CCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHH
Confidence            4578999999886321          158899999999987 6899999999999999999976666654

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.03  E-value=1.9e-10  Score=76.48  Aligned_cols=59  Identities=31%  Similarity=0.541  Sum_probs=48.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.++          +.|.+|+++|++++.+ ++++|++++|+||||.+++.+++++|+
T Consensus       129 ~~~g~~~~~v~~~~~~----------~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~  188 (390)
T 1d2f_A          129 EGNQRTVMPVALEKQA----------DGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMA  188 (390)
T ss_dssp             HHTTCEEEEEECEECS----------SSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHH
T ss_pred             HHCCCEEEEeecccCC----------CccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHH
Confidence            4578999999987531          1688999999999875 799999999999999999966665554

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.03  E-value=2.4e-10  Score=77.13  Aligned_cols=57  Identities=28%  Similarity=0.381  Sum_probs=47.5

Q ss_pred             cc-CCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC---CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EA-AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---RTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~-~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +. .|++++.++++.+            +|.+|+++|++++.+   +++++++++||||||.+++.+++++|+
T Consensus       155 ~~~~g~~~~~~~~~~~------------~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~  215 (430)
T 2x5f_A          155 NTRNGANLQTYPIFDK------------DGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIV  215 (430)
T ss_dssp             TTTTCCEEEEECCBCT------------TSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred             HHhcCCeEEEEeccCc------------cCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHH
Confidence            44 7899999998652            367899999999876   789999999999999999977776664

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.03  E-value=4.2e-10  Score=73.80  Aligned_cols=55  Identities=20%  Similarity=0.408  Sum_probs=47.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.+             ..++++++++++++ +++|++++|+||||.+++.+++.+|+
T Consensus       116 ~~~g~~~~~~~~~~~-------------~~~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~  170 (361)
T 3ftb_A          116 KKHGVSVVFSYLDEN-------------MCIDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVL  170 (361)
T ss_dssp             HHTTCEEEEEECCTT-------------SCCCHHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHH
T ss_pred             HHcCCeEEEeecCcc-------------cCCCHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence            457999999999863             23566999999987 99999999999999999999988876

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.03  E-value=2.3e-10  Score=76.28  Aligned_cols=67  Identities=63%  Similarity=1.011  Sum_probs=51.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.+++....  .+|......+|.+|++++++++.+++++|++++|+||||.+++.+.+++|+
T Consensus       127 ~~~g~~~~~~~~~~~~--~~g~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~  193 (410)
T 3e2y_A          127 RMAGAVPVFIPLRSKP--TDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIA  193 (410)
T ss_dssp             HHTTCEEEEEECEECC--CCSSCCBGGGEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEEeccccc--cccccccccCCcCCHHHHHhhcCCCceEEEEeCCCCCCCcCcCHHHHHHHH
Confidence            4578899999886321  001101112788999999999988999999999999999999988888775

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.02  E-value=2.5e-10  Score=75.98  Aligned_cols=55  Identities=20%  Similarity=0.419  Sum_probs=47.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.++           +|.+|+++++++   ++++|++++|+||||.+++.+++++|+
T Consensus       133 ~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~---~~~~v~i~~p~nptG~~~~~~~l~~l~  187 (391)
T 3h14_A          133 RALGLVPVDLPTAPEN-----------RLQPVPADFAGL---DLAGLMVASPANPTGTMLDHAAMGALI  187 (391)
T ss_dssp             HHTTCEEEEEECCGGG-----------TTSCCHHHHTTS---CCSEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEeecCccc-----------CCCCCHHHHHhc---CCeEEEECCCCCCCCccCCHHHHHHHH
Confidence            5679999999998654           688999999877   799999999999999999988777765

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.02  E-value=4.1e-10  Score=74.81  Aligned_cols=58  Identities=22%  Similarity=0.214  Sum_probs=48.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC---CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---RTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.+++..++           +|.+|++++++++.+   +++++++++||||||.+++.+++++|+
T Consensus       138 ~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~  198 (396)
T 2q7w_A          138 NSAGLEVREYAYYDAE-----------NHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLA  198 (396)
T ss_dssp             HHTTCEEEEEECEETT-----------TTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCceEEEecccCC-----------CCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHH
Confidence            4578999999986432           788999999998864   467888999999999999999877765

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.02  E-value=2.5e-10  Score=76.62  Aligned_cols=59  Identities=37%  Similarity=0.647  Sum_probs=49.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.+.          .+|.+|+++|++++.+++++|++++|+||||.+++.+++++|+
T Consensus       128 ~~~g~~~~~v~~~~~~----------~~~~~d~~~l~~~l~~~~~~v~l~~~~nptG~~~~~~~l~~i~  186 (411)
T 2o0r_A          128 AMAGAHRVTVPLVPDG----------RGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAIA  186 (411)
T ss_dssp             HHTTCEEEEEECEEET----------TEEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEeeccccc----------cCCCCCHHHHHHhhccCceEEEEeCCCCCCCCCCCHHHHHHHH
Confidence            4578999999986531          1578999999999988899999999999999999987766664

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.02  E-value=3.4e-10  Score=76.16  Aligned_cols=57  Identities=12%  Similarity=0.215  Sum_probs=50.0

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..|++++.++++.+            ++.+|+++|++++.+++++|++++|+||||.+++.++|.++|+
T Consensus       146 ~~g~~v~~v~~~~~------------~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~  202 (432)
T 3a9z_A          146 DQVAEVTFVPVSKV------------NGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRRIK  202 (432)
T ss_dssp             TTSCEEEEECCCTT------------TSSCCHHHHHHTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHH
T ss_pred             hcCcEEEEEecCcc------------cCCcCHHHHHHhccCCceEEEEECcccCcccccCHHHHHHHHH
Confidence            36899999998752            4568999999999888999999999999999999999998873

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.02  E-value=2.6e-10  Score=74.91  Aligned_cols=57  Identities=12%  Similarity=0.048  Sum_probs=50.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|++++++++.+ ++++|++++|+||||.+++.++|.++|+
T Consensus        97 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  154 (384)
T 3zrp_A           97 KRYPVNVKVLRPSP-------------GDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIR  154 (384)
T ss_dssp             TTSSCEEEEECCST-------------TCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHG
T ss_pred             HHcCCcEEEecCCC-------------CCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHH
Confidence            56799999999876             567899999999976 7999999999999999999999999874

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.02  E-value=2.2e-10  Score=77.39  Aligned_cols=58  Identities=29%  Similarity=0.446  Sum_probs=50.3

Q ss_pred             ccCCCeEEEeeCC-CCCCCCCCCCCCCCCceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQ-DTSPAEPGRHKSSADFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~-~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.+|+. .++           .|.+|+++|++++. +++++|++++|+||||.+++.+++++|+
T Consensus       161 ~~~g~~~~~~~~~~~~~-----------~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~  220 (421)
T 3l8a_A          161 RLNDHRLVENSLQIING-----------RFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIA  220 (421)
T ss_dssp             HHTTEEEEEEECEEETT-----------EEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHH
T ss_pred             HHCCCEEEeccccccCC-----------CeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHH
Confidence            4578899999986 332           78899999999997 7899999999999999999999888775

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.01  E-value=3.9e-10  Score=74.84  Aligned_cols=57  Identities=42%  Similarity=0.636  Sum_probs=48.8

Q ss_pred             ccCCCeEEEeeCC--CCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQ--DTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~--~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++  ++            +|.+|+++|++++.+++++|++++|+||||.+++.+.+++|+
T Consensus       120 ~~~g~~~~~v~~~~~~~------------~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~  178 (381)
T 1v2d_A          120 FLAGAKARLVRLDLTPE------------GFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIA  178 (381)
T ss_dssp             HHTTCEEEEEECEEETT------------EEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEEeCCCCCc------------cCCcCHHHHHHhcCcCCEEEEECCCCCCCCCccCHHHHHHHH
Confidence            4578999999986  32            678999999999988899999999999999999977776664

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.01  E-value=1.7e-10  Score=76.07  Aligned_cols=59  Identities=20%  Similarity=0.274  Sum_probs=50.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.+.           +|.+|+++|++++.+++++|++++|+||||.+++.++|.++|+
T Consensus       123 ~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~  181 (390)
T 1elu_A          123 ARFGITYRFFPVAATL-----------NQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCR  181 (390)
T ss_dssp             HHHCCEEEEECCGGGS-----------SSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred             HHhCcEEEEEcCCCCC-----------CccchHHHHHHhcCCCceEEEEeccccCCceecCHHHHHHHHh
Confidence            3468999999986422           6778999999999888999999999999999999999998873

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.00  E-value=2.1e-10  Score=74.47  Aligned_cols=57  Identities=18%  Similarity=0.264  Sum_probs=50.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|++++++++++ ++++|++++|+||||.+++.++|.++|+
T Consensus        94 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~  151 (353)
T 2yrr_A           94 ALHGLDPEVLDFPP-------------GEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAIGALAK  151 (353)
T ss_dssp             HHTTCCEEEEECCT-------------TSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHH
T ss_pred             HHcCCceEEEeCCC-------------CCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHHHHHHHH
Confidence            45789999999875             567899999999977 8999999999999999999999998873

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.00  E-value=2.8e-10  Score=75.00  Aligned_cols=57  Identities=12%  Similarity=0.074  Sum_probs=50.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|++++++++.+++++|++++|+||||.+++.++|.++|+
T Consensus       115 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  171 (376)
T 3f0h_A          115 EIHEIPYVALKLEH-------------GKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTMMIGEFCK  171 (376)
T ss_dssp             HHTTCCEEEEECCT-------------TCCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHHHHHHHHH
T ss_pred             HHcCCceEEEeCCC-------------CCCCCHHHHHHhhccCceEEEEecccCCcceecCHHHHHHHHH
Confidence            45688999999875             6778999999988889999999999999999999999998873

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.00  E-value=6.3e-10  Score=73.08  Aligned_cols=57  Identities=16%  Similarity=0.324  Sum_probs=49.7

Q ss_pred             ccCCCeEEEee--CCCCCCCCCCCCCCCCCceeCHHHHHhhhc-----CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIP--LQDTSPAEPGRHKSSADFKLDPAELESKFS-----SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~--~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++  .+.             ++.+|+++|++++.     +++++|++++|+||||.+++.++|.++|+
T Consensus       111 ~~~g~~~~~v~~~~~~-------------~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~  174 (371)
T 2e7j_A          111 ERAGLNIALVPKTDYP-------------DYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCS  174 (371)
T ss_dssp             HHTTCEEEEECCCCTT-------------TCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             HHcCCeEEEeecccCC-------------CCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHH
Confidence            45789999999  543             57789999999987     78999999999999999999999998873

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.00  E-value=5.6e-10  Score=76.45  Aligned_cols=57  Identities=12%  Similarity=0.200  Sum_probs=47.7

Q ss_pred             cCCCeEEEeeC-CCCCCCCCCCCCCCCCceeCHHHHHhhhc---CCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            4 AAGGVPIYIPL-QDTSPAEPGRHKSSADFKLDPAELESKFS---SRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         4 ~~g~~~~~v~~-~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ..|++++.+++ +.++           +|.+|+++++++++   ++++++++++||||||.+++.+++++|+
T Consensus       168 ~~G~~v~~~~~~~~~~-----------~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~  228 (448)
T 3meb_A          168 KLKVPYKEYTYLRKDG-----------ELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELL  228 (448)
T ss_dssp             TTTSCCEEECCBCTTS-----------CSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHH
T ss_pred             hCCCeEEEEecccccc-----------CCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHH
Confidence            78999999998 4321           47899999999886   3578889999999999999999977765

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=98.99  E-value=4.5e-10  Score=74.06  Aligned_cols=54  Identities=30%  Similarity=0.481  Sum_probs=47.8

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.             +  +|++++++++.++++++++++|+||||.+++.+++.+|+
T Consensus       123 ~~~g~~~~~~~~~~-------------~--~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~l~  176 (377)
T 3fdb_A          123 SATQREGIFIDATG-------------G--INLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLNELC  176 (377)
T ss_dssp             HHHTCCEEEEECTT-------------S--CCHHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHHHHH
T ss_pred             HHcCCEEEEccCCC-------------C--CCHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence            45688999999875             4  799999999988899999999999999999999988875

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=98.99  E-value=4.4e-10  Score=73.87  Aligned_cols=57  Identities=28%  Similarity=0.335  Sum_probs=50.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             +|.+|+++|++++.+ ++++|++++|+||||.+.+.++|.++|+
T Consensus       141 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  198 (397)
T 3f9t_A          141 EMMDLEYIYAPIKE-------------DYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAK  198 (397)
T ss_dssp             HHHTCEEEEECBCT-------------TSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred             HHcCceeEEEeeCC-------------CCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHH
Confidence            45689999999875             677899999999987 8999999999999999999999998873

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=98.98  E-value=7.5e-10  Score=74.56  Aligned_cols=66  Identities=58%  Similarity=0.924  Sum_probs=49.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.+....   .....+|.+|+++|++++.+++++|++++|+||||.+++.+.+++|+
T Consensus       143 ~~~g~~~~~~~~~~~~~~~---~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~  208 (429)
T 1yiz_A          143 KAAGGIPRFIPLKPNKTGG---TISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVA  208 (429)
T ss_dssp             HHTTCEEEEEECBCCCSSS---SEEGGGCBCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEEeCCcccccc---cccccCcccCHHHHHHHhccCceEEEECCCCCCCCccCCHHHHHHHH
Confidence            4578999999987531000   00001467899999999988899999999999999999977777664

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=98.98  E-value=4.4e-10  Score=75.25  Aligned_cols=58  Identities=26%  Similarity=0.206  Sum_probs=47.8

Q ss_pred             ccCCCe-EEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC---CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGV-PIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---RTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~-~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++ ++.+++..++           +|.+|++++++++.+   +++++++++||||||.+++.+++++|+
T Consensus       148 ~~~g~~~~~~~~~~~~~-----------~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~  209 (412)
T 1ajs_A          148 TTAGFKDIRSYRYWDTE-----------KRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIA  209 (412)
T ss_dssp             HHTTCSCEEEEECEETT-----------TTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCceeEEEeeecCC-----------CCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHH
Confidence            457888 9999985322           788999999998854   677888999999999999999877765

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=98.97  E-value=6.7e-10  Score=77.06  Aligned_cols=57  Identities=23%  Similarity=0.328  Sum_probs=51.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             +|.+|+++|++++.+++++|++++|+||||.+.+.++|.++|+
T Consensus       210 ~~~G~~v~~v~~~~-------------~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~  266 (514)
T 3mad_A          210 QYFGIKLVRTPLDA-------------DYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAA  266 (514)
T ss_dssp             HHHTCEEEEECBCT-------------TSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHH
T ss_pred             HHcCCeeEEeeeCC-------------CCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHHHHHH
Confidence            45689999999875             6789999999999989999999999999999999999999873

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=98.97  E-value=6e-10  Score=74.08  Aligned_cols=56  Identities=27%  Similarity=0.406  Sum_probs=50.1

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..|++++.++++.             +|.+|++++++++.+++++|++++|+||||.+++.++|.++|+
T Consensus       141 ~~g~~~~~v~~~~-------------~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  196 (420)
T 1t3i_A          141 KTGAVLKFVQLDE-------------QESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAH  196 (420)
T ss_dssp             HHCCEEEEECBCT-------------TSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHH
T ss_pred             hcCcEEEEeccCC-------------CCCcCHHHHHHhhCCCceEEEEeCCcccccCcCCHHHHHHHHH
Confidence            4689999999874             6778999999999889999999999999999999999998873

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=98.97  E-value=3.5e-10  Score=76.53  Aligned_cols=55  Identities=22%  Similarity=0.268  Sum_probs=46.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEEE-EeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLII-LNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~-l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.             + .+|+++|++++++ ++|+|+ +++||||||.+++.+++++|+
T Consensus       149 ~~~g~~~~~v~~~~-------------~-g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~  205 (422)
T 3d6k_A          149 EHFGFEMINVPMTD-------------E-GPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELA  205 (422)
T ss_dssp             HHHTCEEEEEEEET-------------T-EECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEecCCCC-------------C-CCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHH
Confidence            45689999999875             2 2899999999875 789988 799999999999999877775

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=98.97  E-value=2.7e-10  Score=75.85  Aligned_cols=57  Identities=11%  Similarity=0.218  Sum_probs=50.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|+++++++++ +++++|++++|+||||.+++.++|.++|+
T Consensus       106 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  163 (416)
T 3isl_A          106 ERYGANVHMLECEW-------------GTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACR  163 (416)
T ss_dssp             HHTTCEEEEEECCT-------------TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHH
T ss_pred             HhcCCeeEEEecCC-------------CCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHH
Confidence            46799999999875             55789999999997 68999999999999999999999998873

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=98.97  E-value=1.7e-10  Score=76.01  Aligned_cols=57  Identities=12%  Similarity=0.136  Sum_probs=50.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|+++|++++++ ++++|++++|+||||.+++.++|.++|+
T Consensus       118 ~~~g~~~~~~~~~~-------------~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  175 (393)
T 3kgw_A          118 DRIGARVHQMIKKP-------------GEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCH  175 (393)
T ss_dssp             HHTTCEEEEEECCT-------------TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHH
T ss_pred             HHcCCceEEEeCCC-------------CCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHHHHHH
Confidence            45789999999875             456899999999987 8999999999999999999999998873

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=98.97  E-value=3.8e-10  Score=74.30  Aligned_cols=57  Identities=7%  Similarity=-0.016  Sum_probs=49.8

Q ss_pred             ccCCCeEEEeeC-CCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPL-QDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~-~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.+++ +.             ++.+|+++|++++++ ++++|++++|+||||.+++.++|.++|+
T Consensus       106 ~~~g~~~~~v~~~~~-------------~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~  164 (385)
T 2bkw_A          106 RSYGAQVDVVRPLKI-------------GESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIK  164 (385)
T ss_dssp             HHTTCEEEEECCSST-------------TSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHH
T ss_pred             HHcCCceEEEecCCC-------------CCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHHHHHH
Confidence            457899999998 53             677899999999876 7999999999999999999999998873

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=98.96  E-value=6.6e-10  Score=75.11  Aligned_cols=60  Identities=27%  Similarity=0.299  Sum_probs=46.0

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhh---hcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESK---FSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~---~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ..|..++.++++.++    |    ...|.+|+++|+++   +.+++++|++++||||||.+++.+++++|+
T Consensus       170 ~~~~~~~~~~~~~~~----g----~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~  232 (444)
T 3if2_A          170 AVLPHIDEVTHDGEE----G----FFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLA  232 (444)
T ss_dssp             ECCCEEEEEEETTEE----E----EEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             ccCceEEeccccccc----C----ccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHH
Confidence            456777777776421    0    00368999999998   677899999999999999999977777664

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=98.96  E-value=1.8e-10  Score=76.38  Aligned_cols=57  Identities=18%  Similarity=0.113  Sum_probs=50.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             +|.+|++++++++++ ++++|++++|+||||.+++.++|.++|+
T Consensus       113 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~  170 (396)
T 2ch1_A          113 ERYGADVRTIEGPP-------------DRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICH  170 (396)
T ss_dssp             HHTTCEEEEEECCT-------------TSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHH
T ss_pred             HHcCCceEEecCCC-------------CCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHHHHHH
Confidence            55799999999864             667899999999977 8999999999999999999999988863

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=98.96  E-value=8.1e-10  Score=73.92  Aligned_cols=56  Identities=21%  Similarity=0.248  Sum_probs=50.4

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..|++++.++++.             ++.+|+++|++++.+++++|++++|+||||.+++.++|.++|+
T Consensus       135 ~~g~~~~~v~~~~-------------~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  190 (423)
T 3lvm_A          135 REGFEVTYLAPQR-------------NGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCR  190 (423)
T ss_dssp             HTTCEEEEECCCT-------------TSCCCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHH
T ss_pred             HcCCEEEEeccCC-------------CCccCHHHHHHhcCCCcEEEEEeCCCCCCccccCHHHHHHHHH
Confidence            4589999999876             6778999999999989999999999999999999999998873

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=98.96  E-value=1.6e-10  Score=76.52  Aligned_cols=56  Identities=27%  Similarity=0.293  Sum_probs=47.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.+++ . +           +|.+|++++++++.+++++|++++||||||.+++.+++++|+
T Consensus       129 ~~~g~~~~~~~~-~-~-----------~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~  184 (376)
T 2dou_A          129 RVASLRTFLIPL-R-E-----------DGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEAL  184 (376)
T ss_dssp             HHTTCEEEEECB-C-T-----------TSSBCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEeeC-C-C-----------CCCCCHHHHHHhhccCceEEEECCCCCCcCccCCHHHHHHHH
Confidence            457899999998 3 2           677899999888877899999999999999999988877665

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=98.95  E-value=2.1e-10  Score=77.23  Aligned_cols=57  Identities=30%  Similarity=0.463  Sum_probs=48.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++. +           +|.+|+++|++++.+++++|++++|+||||.+++.+++++|+
T Consensus       151 ~~~g~~~~~v~~~~-~-----------~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~  207 (404)
T 2o1b_A          151 LLADGKPVPLNLEP-P-----------HYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATKEVFDEAI  207 (404)
T ss_dssp             HHTTCEEEEEECCT-T-----------TCCCCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred             HHCCCEEEEeccCc-c-----------cCcCCHHHHHHhhccCceEEEEcCCCCCCCccCCHHHHHHHH
Confidence            45789999999875 2           677889999888877899999999999999999987777664

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=98.95  E-value=3.7e-10  Score=74.71  Aligned_cols=57  Identities=26%  Similarity=0.336  Sum_probs=50.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|++++++++.+++++|++++|+||||.+++.++|.++|+
T Consensus       135 ~~~g~~~~~~~~~~-------------~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  191 (406)
T 1kmj_A          135 ARVGAELRVIPLNP-------------DGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAH  191 (406)
T ss_dssp             HHHTCEEEEECBCT-------------TSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred             HhCCCEEEEEecCC-------------CCCcCHHHHHHHhccCCeEEEEeCCCccccCcCCHHHHHHHHH
Confidence            34688999999874             5678999999999888999999999999999999999998873

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=98.94  E-value=7.3e-10  Score=72.45  Aligned_cols=55  Identities=25%  Similarity=0.426  Sum_probs=45.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC------CccEEEEeCCCCcc-ccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPL-GKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPt-G~~~~~~~l~~l~   71 (72)
                      +..|++++.+ ...             ++.+|++++++++++      ++++|++++||||| |.+++.+++++|+
T Consensus        98 ~~~g~~~~~v-~~~-------------~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~  159 (347)
T 1jg8_A           98 VLSGVMPHPV-PGK-------------NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEIC  159 (347)
T ss_dssp             HHTCCEEEEE-CEE-------------TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHH
T ss_pred             hccCeEEEEe-cCC-------------CCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHH
Confidence            3468888888 332             567899999999864      68999999999999 9999998777664

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=98.94  E-value=8.3e-10  Score=75.44  Aligned_cols=59  Identities=12%  Similarity=0.021  Sum_probs=52.5

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++.+|++++.++++..            +|.+|+++|++++++++++|++++|+||||.+.+.++|.++|+
T Consensus       156 ~~~~G~~v~~v~~~~~------------~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~  214 (452)
T 2dgk_A          156 ARYWDVELREIPMRPG------------QLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALD  214 (452)
T ss_dssp             HHHTTCEEEECCCBTT------------BCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHH
T ss_pred             HHHcCceEEEEecCCC------------CCeECHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHH
Confidence            3567999999998752            6889999999999989999999999999999999999999873

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=98.93  E-value=3.8e-10  Score=75.15  Aligned_cols=56  Identities=20%  Similarity=0.223  Sum_probs=49.5

Q ss_pred             CCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         5 ~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      .|++++.++++++            ++.+|+++|++++++++++|++++|+||||.+++.++|.++|+
T Consensus       137 ~g~~v~~v~~~~~------------~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  192 (406)
T 3cai_A          137 YGAKVKWAEVDIE------------TGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVH  192 (406)
T ss_dssp             HBCEEEEECCCTT------------TCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCCCHHHHHHHH
T ss_pred             cCCeEEEEecCcc------------cCCcCHHHHHHHhCCCceEEEEeCCcCCccccCCHHHHHHHHH
Confidence            5889999998742            5668999999999888999999999999999999999998873

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=98.93  E-value=9e-10  Score=73.22  Aligned_cols=58  Identities=17%  Similarity=0.185  Sum_probs=47.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC---CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---RTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.+++..++           +|.+|++++++++.+   +++++++++||||||.+++.+++++|+
T Consensus       135 ~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~  195 (394)
T 2ay1_A          135 NFMGLPVQTYRYFDAE-----------TRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIA  195 (394)
T ss_dssp             HHHTCCEEEEECEETT-----------TTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCceEEEeccccc-----------CCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHH
Confidence            4568899999986432           788999999998864   367788899999999999999887765

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=98.92  E-value=1e-09  Score=72.29  Aligned_cols=57  Identities=16%  Similarity=0.302  Sum_probs=49.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh--cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF--SSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|+++|++++  .+++++|++++|+||||.+++.++|.++|+
T Consensus       115 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  173 (386)
T 2dr1_A          115 ESNGRKAVVLEYEP-------------GKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAK  173 (386)
T ss_dssp             HHTTCEEEEEECCT-------------TCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHH
T ss_pred             HHhCCceEEEecCC-------------CCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHH
Confidence            45789999999875             5678999999998  468999999999999999999999998873

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=98.92  E-value=1.5e-10  Score=75.62  Aligned_cols=55  Identities=13%  Similarity=0.161  Sum_probs=47.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|+++++  +.+++|+|++++|+||||.+++.++|.++|+
T Consensus       103 ~~~g~~~~~v~~~~-------------~~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~l~~i~~la~  157 (362)
T 3ffr_A          103 GELGREAYKEEAAF-------------GKGFYPADIT--VPADAEIICLTHNETSSGVSMPVEDINTFRD  157 (362)
T ss_dssp             HHTTCEEEEEECCT-------------TCCCCGGGCC--CCTTCCEEEEESEETTTTEECCHHHHTTSGG
T ss_pred             HHhCCCeEEEecCC-------------CCCCCHHHHh--ccCCccEEEEEcCCCCcceeCCHHHHHHHHH
Confidence            45789999999864             6778988887  7778999999999999999999999888763

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=98.91  E-value=3.6e-10  Score=75.14  Aligned_cols=57  Identities=14%  Similarity=0.128  Sum_probs=50.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|+++|++++.+ ++++|++++|+||||.+++.++|.++|+
T Consensus       108 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  165 (411)
T 3nnk_A          108 RRCRAEVHTIEVPW-------------GEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICR  165 (411)
T ss_dssp             HHTTCEEEEEECCT-------------TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHH
T ss_pred             HHcCCeEEEEecCC-------------CCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHHHH
Confidence            45789999999864             677899999999976 8999999999999999999999998873

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=98.91  E-value=4e-10  Score=74.67  Aligned_cols=57  Identities=11%  Similarity=0.119  Sum_probs=49.7

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|++++++++++ ++++|++++|+||||.+++.++|.++|+
T Consensus       114 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~  171 (393)
T 2huf_A          114 TRYGADVRVVKSKV-------------GQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCH  171 (393)
T ss_dssp             HHTTCEEEEEECCT-------------TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHH
T ss_pred             HHcCCeeEEEeCCC-------------CCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHHHHHH
Confidence            34789999999865             556899999999977 8999999999999999999999888863

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=98.90  E-value=1.8e-09  Score=72.33  Aligned_cols=57  Identities=21%  Similarity=0.235  Sum_probs=45.3

Q ss_pred             ccCCCeEEEeeC-CCCCCCCCCCCCCCCCceeCHHHHHhhhcCC---ccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPL-QDTSPAEPGRHKSSADFKLDPAELESKFSSR---TKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~-~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.+++ +..            +|.+|++++++++.++   ++++++++||||||.+++.+++++|+
T Consensus       142 ~~~g~~~~~v~~~~~~------------~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~  202 (412)
T 1yaa_A          142 ENQGLKTATYPYWANE------------TKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIV  202 (412)
T ss_dssp             HTTTCCEEEEECEETT------------TTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCceEEEEeeecCC------------CCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHH
Confidence            457899999998 432            6789999999988543   34555699999999999999887775

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=98.89  E-value=1.6e-09  Score=73.12  Aligned_cols=56  Identities=20%  Similarity=0.220  Sum_probs=46.4

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-CCccEEEEe-CCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-SRTKLIILN-TPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~-~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.+|++.+              .+|+++|++++. +++++|+++ +||||||.+++.+++++|+
T Consensus       150 ~~~~g~~~~~v~~~~~--------------g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~  207 (427)
T 3ppl_A          150 TERFGFEMISVPMNED--------------GPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLS  207 (427)
T ss_dssp             HHHTTCEEEEEEEETT--------------EECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHH
T ss_pred             HHHcCCEEEEeCCCCC--------------CCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHH
Confidence            3567999999998752              289999999984 678998866 8899999999999777765

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=98.88  E-value=5.4e-10  Score=74.16  Aligned_cols=57  Identities=14%  Similarity=0.103  Sum_probs=50.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|+++|++++.+ ++++|++++|+||||.+++.++|.++|+
T Consensus       129 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  186 (393)
T 1vjo_A          129 GRYGADVRTISKPW-------------GEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCR  186 (393)
T ss_dssp             HHTTCEEEEEECCT-------------TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHH
T ss_pred             HHcCCceEEEecCC-------------CCCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHHHHHHHHH
Confidence            45789999999875             567899999999987 8999999999999999999999988863

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=98.88  E-value=2e-09  Score=72.41  Aligned_cols=56  Identities=23%  Similarity=0.240  Sum_probs=46.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh--cCCccEEEE-eCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF--SSRTKLIIL-NTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~~i~l-~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             + .+|+++|++++  .+++++|++ ++||||||.+++.+++++|++
T Consensus       142 ~~~g~~~~~v~~~~-------------~-g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~  200 (423)
T 3ez1_A          142 QTLGFELLTVDMQS-------------D-GPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAG  200 (423)
T ss_dssp             HHHTCEEEEEEEET-------------T-EECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHT
T ss_pred             HHcCCEEEeccCCC-------------C-CCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHH
Confidence            45688999999875             2 38999999999  578999875 489999999999998887764

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=98.88  E-value=4.9e-10  Score=73.45  Aligned_cols=52  Identities=33%  Similarity=0.652  Sum_probs=42.8

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             +|.+|++++     +++++|++++||||||.+++.+++.++++
T Consensus       114 ~~~g~~~~~v~~~~-------------~~~~d~~~l-----~~~~~v~l~~p~nptG~~~~~~~l~~l~~  165 (335)
T 1uu1_A          114 KAVGAKFLEVPLTK-------------DLRIPEVNV-----GEGDVVFIPNPNNPTGHVFEREEIERILK  165 (335)
T ss_dssp             HHHTCEEEECCCCT-------------TSCCCCCCC-----CTTEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             HHcCCeEEEeccCC-------------CCCCCHHHc-----CCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            45688999998864             566776655     57899999999999999999999998863

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=98.87  E-value=1.2e-09  Score=72.35  Aligned_cols=56  Identities=9%  Similarity=0.182  Sum_probs=48.5

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh--cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF--SSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..|++++.++++.             ++.+|+++|++++  .+++++|++++|+||||.+++.++|.++|+
T Consensus       104 ~~g~~~~~v~~~~-------------~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  161 (392)
T 2z9v_A          104 RYSPHLLEIEVPY-------------NEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVS  161 (392)
T ss_dssp             HHCSCEEEEECCT-------------TSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHH
T ss_pred             HcCCceEEeeCCC-------------CCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHH
Confidence            4688999999875             4568999999998  457999999999999999999999998873

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=98.87  E-value=1.3e-09  Score=72.05  Aligned_cols=57  Identities=23%  Similarity=0.342  Sum_probs=43.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.++           +|.+ ++++.+.+.+++++|++++|+||||.+++.+++++|+
T Consensus       116 ~~~g~~~~~v~~~~~~-----------~~~~-l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~  172 (364)
T 1lc5_A          116 AQSGCEIRRWSLREAD-----------GWQL-TDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIA  172 (364)
T ss_dssp             HHTTCEEEEEECCGGG-----------TTCC-CTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCeEEEEeCCccc-----------ccch-hHHHHHhccCCCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence            4578999999987532           4544 4556566667899999999999999999977766654

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=98.87  E-value=6.2e-09  Score=70.77  Aligned_cols=52  Identities=27%  Similarity=0.317  Sum_probs=46.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++++++++                  |++++++++.+++++|++++|+||||.+++.++|.++|+
T Consensus       127 ~~~G~~v~~v~~~------------------d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~  178 (403)
T 3cog_A          127 SEFGLKISFVDCS------------------KIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVH  178 (403)
T ss_dssp             GGGTCEEEEECTT------------------SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHT
T ss_pred             HHcCCEEEEECCC------------------CHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHH
Confidence            5678888888764                  578999999889999999999999999999999999874

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=98.87  E-value=2e-09  Score=73.04  Aligned_cols=52  Identities=25%  Similarity=0.307  Sum_probs=44.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++                  |++++++++.+++|+|++++|+||||.+++.++|.++|+
T Consensus       123 ~~~g~~~~~v~~~------------------d~~~l~~~i~~~t~~v~l~~p~NptG~v~~l~~i~~la~  174 (404)
T 1e5e_A          123 TKFGIQVDFINTA------------------IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAH  174 (404)
T ss_dssp             HHTTCEEEEECTT------------------STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             HHcCCEEEEECCC------------------CHHHHHHhcCCCCcEEEEECCCCCCCcccCHHHHHHHHH
Confidence            4578889888864                  457788888889999999999999999999999998873

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=98.84  E-value=5.9e-09  Score=72.55  Aligned_cols=53  Identities=21%  Similarity=0.308  Sum_probs=46.4

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.+++.                  |++++++++.+++++|++++|+||||.+++.++|.++|+
T Consensus       192 ~~~~G~~v~~v~~~------------------d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~  244 (464)
T 1ibj_A          192 VPRSGVVVKRVNTT------------------KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAH  244 (464)
T ss_dssp             SGGGTCEEEEECTT------------------SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred             HHHcCCEEEEeCCC------------------CHHHHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHHH
Confidence            35678888888763                  689999999889999999999999999999999998873

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=98.82  E-value=5.7e-09  Score=70.59  Aligned_cols=56  Identities=21%  Similarity=0.269  Sum_probs=44.7

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc------------CCccEEEE-eCCCCccccCCCHHHHH
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS------------SRTKLIIL-NTPHNPLGKVFTREELE   68 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~------------~~~~~i~l-~~P~NPtG~~~~~~~l~   68 (72)
                      ++..|++++.++++.              ..+|+++|++++.            +++++|++ ++||||||.+++.++++
T Consensus       149 ~~~~g~~~~~v~~~~--------------~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~  214 (425)
T 2r2n_A          149 LHPLGCNIINVASDE--------------SGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKK  214 (425)
T ss_dssp             HGGGTCEEEEECEET--------------TEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHH
T ss_pred             HHHcCCEEEEeCcCC--------------CCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHH
Confidence            356789999999864              2379999998876            46888876 69999999999999776


Q ss_pred             HHh
Q psy790           69 VIA   71 (72)
Q Consensus        69 ~l~   71 (72)
                      +|+
T Consensus       215 ~l~  217 (425)
T 2r2n_A          215 EIY  217 (425)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            664

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=98.82  E-value=1.2e-09  Score=73.39  Aligned_cols=57  Identities=33%  Similarity=0.528  Sum_probs=46.8

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.++           +|.+ +++|++++.+++++|++++|+||||.+++.+.+++|+
T Consensus       144 ~~~g~~~~~v~~~~~~-----------~~~~-~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~  200 (409)
T 2gb3_A          144 KIAGVKLIPVTRRMEE-----------GFAI-PQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLV  200 (409)
T ss_dssp             HHHTCEEEEEECCGGG-----------TSCC-CTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEeccCCCC-----------CCcc-HHHHHHhhCcCCeEEEECCCCCCCCCCcCHHHHHHHH
Confidence            4568899999987522           5655 7889998888899999999999999999987777665

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=98.81  E-value=7.4e-09  Score=70.94  Aligned_cols=52  Identities=19%  Similarity=0.336  Sum_probs=45.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++++++++                  |+++|++++.+++++|++++|+||||.+.+.++|.++|+
T Consensus       142 ~~~g~~~~~v~~~------------------d~~~l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~  193 (414)
T 3ndn_A          142 PRWGVQTVFVDGD------------------DLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAH  193 (414)
T ss_dssp             HHTTCEEEEECTT------------------CHHHHHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             HHcCcEEEEeCCC------------------CHHHHHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHH
Confidence            3478888888864                  589999999989999999999999999999999999873

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=98.80  E-value=1e-09  Score=72.39  Aligned_cols=55  Identities=31%  Similarity=0.505  Sum_probs=43.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++..+           .+.+   ++++++.+++++|++++||||||.+++.+++.+|+
T Consensus       126 ~~~g~~~~~~~~~~~~-----------~~~~---~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~  180 (376)
T 3ezs_A          126 KFIKAKSLLMPLTKEN-----------DFTP---SLNEKELQEVDLVILNSPNNPTGRTLSLEELISWV  180 (376)
T ss_dssp             HHTTCEEEEEECCGGG-----------TSCC---CCCHHHHHHCSEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEcccCCCC-----------Ccch---hHHhhhccCCCEEEEcCCCCCcCCCCCHHHHHHHH
Confidence            4678999999988642           3433   45555656799999999999999999999888875

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=98.80  E-value=7.6e-09  Score=67.85  Aligned_cols=53  Identities=19%  Similarity=0.298  Sum_probs=44.7

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCcc-ccCCCHHHHHHHh
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPL-GKVFTREELEVIA   71 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPt-G~~~~~~~l~~l~   71 (72)
                      ..|++++.++.+              ++.+|+++|+++ .+++++|++++||||+ |.+++.+++++|+
T Consensus       111 ~~g~~~~~v~~~--------------~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~  164 (359)
T 3pj0_A          111 LQQITPLLLGTA--------------NQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFEELEKIS  164 (359)
T ss_dssp             HHCCEEEECSCT--------------TSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHHHHHHH
T ss_pred             hcCceEEecCCc--------------CCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHHHHHHHH
Confidence            358888888762              567899999998 7789999999999998 7999999996654

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=98.79  E-value=7.8e-09  Score=72.15  Aligned_cols=59  Identities=10%  Similarity=-0.008  Sum_probs=52.6

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++.+|++++.++++..            +|.+|+++|++++.+++++|++++|+||||.+.+.++|.++++
T Consensus       171 ~~~~G~~~~~v~~~~~------------~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~  229 (502)
T 3hbx_A          171 ARYFEVELKEVKLSEG------------YYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLV  229 (502)
T ss_dssp             HHHTTCEEEEECCBTT------------BCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred             HHHcCceeEEEecCCC------------cCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccCHHHHHHHHH
Confidence            3567999999998752            5889999999999999999999999999999999999999873

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=98.77  E-value=9.2e-10  Score=75.79  Aligned_cols=58  Identities=22%  Similarity=0.231  Sum_probs=51.1

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++..            +|.+|+++|++++.+++++|++++|+||||.+.+.++|.++|
T Consensus       175 ~~~~G~~~~~v~~~~~------------~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~~la  232 (497)
T 3mc6_A          175 AYYFGMKLRHVELDPT------------TYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIA  232 (497)
T ss_dssp             HHHSCCEEEEECBCTT------------TCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTTTHH
T ss_pred             HHHcCCeEEEEecCcc------------cCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHHHHH
Confidence            3567999999998752            677999999999988999999999999999999999888876

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=98.25  E-value=7.9e-10  Score=73.82  Aligned_cols=60  Identities=32%  Similarity=0.484  Sum_probs=47.7

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.++++.++          +.|.+|++++++++. .++++|++++|+||||.+++.+++++|+
T Consensus       130 ~~~~g~~~~~~~~~~~~----------g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l~  190 (392)
T 3b1d_A          130 VRLNNRKLVSNSLKEEN----------GLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIG  190 (392)
Confidence            34568888888875321          157889999999886 6789999999999999999977777665

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=98.76  E-value=6.8e-09  Score=71.46  Aligned_cols=57  Identities=19%  Similarity=0.199  Sum_probs=50.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeC----CCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNT----PHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~----P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++++++++.             ++.+|++++++++++++|+|++++    |+||||.+.+.++|.++++
T Consensus       130 ~~~G~~~~~v~~~~-------------~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~  190 (409)
T 3jzl_A          130 KDFHIGYSSVPLLE-------------NGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVK  190 (409)
T ss_dssp             GGGTCEEEECCCCT-------------TSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHH
T ss_pred             HHcCCEEEEeCCCC-------------CCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHH
Confidence            45689999999875             677899999999998999999999    9999999999999988873

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=98.76  E-value=3.8e-09  Score=68.81  Aligned_cols=57  Identities=11%  Similarity=0.090  Sum_probs=48.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC--CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS--RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~--~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             .+.+|+++|++++.+  ++++|++++|+||||.+++.++|.++|+
T Consensus       100 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  158 (366)
T 1m32_A          100 GLMGIAHHAYDCGE-------------VARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAH  158 (366)
T ss_dssp             HHHTCCEEEEECCT-------------TSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHH
T ss_pred             HHhCCceEEEeCCC-------------CCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCHHHHHHHHH
Confidence            34688999999864             566899999998865  5899999999999999999999998873

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=98.76  E-value=6.8e-09  Score=71.24  Aligned_cols=55  Identities=24%  Similarity=0.352  Sum_probs=45.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc----C--CccEE-EEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS----S--RTKLI-ILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~----~--~~~~i-~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.             + .+|+++|++++.    +  ++|+| ++++|+||||.+++.+.+++|+
T Consensus       182 ~~~g~~~~~v~~~~-------------~-g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~  243 (448)
T 3aow_A          182 NFYEPQYIQIPLDD-------------E-GMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLL  243 (448)
T ss_dssp             HTTCCEEEEEEEET-------------T-EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEeccCC-------------C-CCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHH
Confidence            45789999999864             2 289999999886    5  78997 5789999999999998777665

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=98.75  E-value=7.5e-09  Score=69.90  Aligned_cols=55  Identities=29%  Similarity=0.431  Sum_probs=45.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC--------CccEE-EEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS--------RTKLI-ILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~--------~~~~i-~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.             + .+|+++|++++.+        ++++| ++++|+||||.+++.+++++|+
T Consensus       151 ~~~g~~~~~v~~~~-------------~-~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~  214 (425)
T 1vp4_A          151 RQYLANFVVVPLED-------------D-GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALV  214 (425)
T ss_dssp             HTTTCEEEEEEEET-------------T-EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEeccCC-------------C-CCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHH
Confidence            45789999999864             2 2899999988865        78897 5799999999999988777665

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=98.75  E-value=1.8e-09  Score=70.29  Aligned_cols=54  Identities=15%  Similarity=0.054  Sum_probs=45.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             ++.+|++++++   +++++|++++|+||||.+++.++|.++|+
T Consensus        95 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~  148 (352)
T 1iug_A           95 LEAGLVVERLDYPY-------------GDTPRPEDVAK---EGYAGLLLVHSETSTGALADLPALARAFK  148 (352)
T ss_dssp             HHTTCEEEEEECCT-------------TCCCCTTTSCC---SSCSEEEEESEETTTTEECCHHHHHHHHH
T ss_pred             HHcCCceEEEeCCC-------------CCCCCHHHHhc---cCCcEEEEEEecCCcceecCHHHHHHHHH
Confidence            34789999999865             45577777766   67899999999999999999999998873

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=98.74  E-value=1.4e-08  Score=70.06  Aligned_cols=52  Identities=25%  Similarity=0.289  Sum_probs=46.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++++++.+                  |++++++++++++++|++++|+||||.+++.++|.++|+
T Consensus       143 ~~~G~~~~~v~~~------------------d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~  194 (430)
T 3ri6_A          143 PSFGIEVRFVDVM------------------DSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVH  194 (430)
T ss_dssp             HHTTCEEEEECTT------------------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             HHcCCEEEEeCCC------------------CHHHHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHH
Confidence            4578888888764                  689999999989999999999999999999999999873

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=98.74  E-value=6.5e-09  Score=69.34  Aligned_cols=55  Identities=16%  Similarity=0.285  Sum_probs=45.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEE-EEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLI-ILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i-~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.             + .+|+++|++++.+ ++++| ++++|+||||.+++.+++++|+
T Consensus       133 ~~~g~~~~~~~~~~-------------~-~~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~  189 (397)
T 2zyj_A          133 RLQGPRFLTVPAGE-------------E-GPDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLL  189 (397)
T ss_dssp             HTTCCEEEEEEEET-------------T-EECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHH
T ss_pred             HHcCCEEEecCcCC-------------C-CCCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHH
Confidence            45789999999864             2 2799999999875 78987 5799999999999998766654

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=98.73  E-value=1.2e-08  Score=66.93  Aligned_cols=52  Identities=19%  Similarity=0.191  Sum_probs=42.1

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCcc-ccCCCHHHHHHHh
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPL-GKVFTREELEVIA   71 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPt-G~~~~~~~l~~l~   71 (72)
                      ..|++++.++.+              ++.+|+++|+++.  ++++|++++||||| |.+++.+++++|+
T Consensus       110 ~~g~~~~~v~~~--------------~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~  162 (357)
T 3lws_A          110 LHPIETILVGAA--------------DRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETIS  162 (357)
T ss_dssp             HSSCEEEECSCT--------------TSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHH
T ss_pred             ccCcEEEEecCC--------------CCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHH
Confidence            347788877742              5568999999883  49999999999998 9999988877765

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=98.73  E-value=9.3e-09  Score=70.60  Aligned_cols=52  Identities=13%  Similarity=0.185  Sum_probs=44.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++.+++..                  |+++++++++++||+|++++|+||||.+++.++|.++|+
T Consensus       143 ~~~G~~v~~v~~~------------------d~~~le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~  194 (415)
T 2fq6_A          143 SKLGVTTSWFDPL------------------IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVR  194 (415)
T ss_dssp             GGGTCEEEEECTT------------------CGGGGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             HHcCcEEEEECCC------------------CHHHHHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHH
Confidence            4568888888653                  567889999889999999999999999999999999873

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=98.73  E-value=2.7e-08  Score=68.76  Aligned_cols=56  Identities=16%  Similarity=0.127  Sum_probs=49.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEe-CCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILN-TPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~-~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.             +|.+|++++++++++++|+|+++ +||||+|...+.+.+++|+
T Consensus       136 ~~~G~~~~~v~~~~-------------~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~  192 (431)
T 3ht4_A          136 KEYNIGYNAVPLTE-------------GGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMI  192 (431)
T ss_dssp             GGGTCEEEECCBCT-------------TSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHH
T ss_pred             HHcCCEEEEeCCCC-------------CCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHH
Confidence            45789999999875             67789999999999899999999 5999999999998888775

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=98.73  E-value=7e-09  Score=70.40  Aligned_cols=66  Identities=17%  Similarity=0.173  Sum_probs=46.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCc----cEEEEeCCCC-ccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRT----KLIILNTPHN-PLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~----~~i~l~~P~N-PtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++...+.+ .  ...-+|.+|+++|++++.+++    ++|++++|+| |||.+++.+.+++|+
T Consensus       131 ~~~G~~~~~v~~~~~~~~~-~--~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~  201 (456)
T 2ez2_A          131 EKNGAVFVDIVRDEAHDAG-L--NIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVR  201 (456)
T ss_dssp             HHTTCEEEECBCGGGGCTT-C--CCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHH
T ss_pred             HHcCCEEEEeccccccccc-c--cccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHH
Confidence            4578999999887320000 0  000026789999999987655    8999999999 999999966665554

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=98.72  E-value=8e-09  Score=71.44  Aligned_cols=43  Identities=21%  Similarity=0.326  Sum_probs=36.8

Q ss_pred             CceeCHHHHHhhh---cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           30 DFKLDPAELESKF---SSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        30 ~~~~d~~~l~~~~---~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      .+.+|++.+.+.+   .++++++++++||||||.+++.+++++|++
T Consensus       172 ~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~  217 (420)
T 4h51_A          172 TVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIAS  217 (420)
T ss_dssp             GTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence            7888988887766   356788999999999999999999999863

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=98.72  E-value=2e-08  Score=69.75  Aligned_cols=53  Identities=19%  Similarity=0.264  Sum_probs=46.0

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCc-cEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRT-KLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++.+|+++++++.+                  |++++++++++++ ++|++++|+||||.+++.++|.++|+
T Consensus       174 ~~~~G~~v~~v~~~------------------d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~  227 (445)
T 1qgn_A          174 LPKMGITATVIDPA------------------DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCH  227 (445)
T ss_dssp             GGGGTCEEEEECSS------------------CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             HHHcCCEEEEeCCC------------------CHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHH
Confidence            35678888888753                  6889999998889 99999999999999999999998873

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=98.72  E-value=1.7e-08  Score=67.72  Aligned_cols=52  Identities=23%  Similarity=0.345  Sum_probs=45.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.+++.                  |++++++++.+++++|++++|+||||.+++.++|.++|+
T Consensus       125 ~~~g~~~~~v~~~------------------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  176 (398)
T 2rfv_A          125 PKFGINVRFVDAA------------------KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAH  176 (398)
T ss_dssp             HHTTCEEEEECTT------------------SHHHHHHHCCTTEEEEEEESSBTTTTBCCCHHHHHHHHH
T ss_pred             HHcCCEEEEeCCC------------------CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHH
Confidence            4568888888763                  689999999889999999999999999999999998873

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=98.70  E-value=3.5e-08  Score=66.68  Aligned_cols=52  Identities=19%  Similarity=0.227  Sum_probs=45.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++++++.+                  |++++++++.+++++|++++|+||||.+.+.++|.++|+
T Consensus       127 ~~~g~~~~~v~~~------------------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~  178 (392)
T 3qhx_A          127 TGWNVEYTPVALA------------------DLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGA  178 (392)
T ss_dssp             GGGTCEEEEECTT------------------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             HhcCcEEEEeCCC------------------CHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHH
Confidence            5578888888764                  689999999989999999999999999999999999873

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=98.70  E-value=1.5e-08  Score=66.42  Aligned_cols=50  Identities=20%  Similarity=0.346  Sum_probs=40.1

Q ss_pred             cccCCCeEEEeeC-CCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPL-QDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~-~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.+++ +..+           .+.+          +++++|++++|+||||.+++.+++.+|++
T Consensus       106 ~~~~g~~~~~v~~~~~~~-----------~~~~----------~~~~~v~i~~p~nptG~~~~~~~l~~l~~  156 (350)
T 3fkd_A          106 CRMYEHEVCFYPSNEDIG-----------EADF----------SNMDFCWLCNPNNPDGRLLQRTEILRLLN  156 (350)
T ss_dssp             HHHTTCEEEEEETTSCGG-----------GSCC----------TTCSEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             HHHcCCeEEEEecCCccc-----------cCcc----------CCCCEEEEeCCCCCcCCCCCHHHHHHHHH
Confidence            3567999999998 5422           3332          57999999999999999999999998863

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=98.70  E-value=2.2e-08  Score=65.20  Aligned_cols=51  Identities=25%  Similarity=0.382  Sum_probs=43.9

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..|++++.++..                  |++++++++++++++|++++|+||||.+++.+++.++++
T Consensus        60 ~~g~~~~~~~~~------------------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~  110 (331)
T 1pff_A           60 KFGVEVDFIDMA------------------VPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQAR  110 (331)
T ss_dssp             HTTCEEEEECTT------------------STTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHT
T ss_pred             hcCCEEEEeCCC------------------CHHHHHHhhcCCCeEEEEECCCCCcCcccCHHHHHHHHh
Confidence            468888888752                  467888888888999999999999999999999999874

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=98.69  E-value=1.9e-08  Score=67.10  Aligned_cols=55  Identities=27%  Similarity=0.424  Sum_probs=44.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc----C--CccEE-EEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS----S--RTKLI-ILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~----~--~~~~i-~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.             + .+|+++|++++.    +  ++++| ++++|+||||.+++.+++++|+
T Consensus       140 ~~~g~~~~~v~~~~-------------~-~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~  201 (407)
T 2zc0_A          140 EQLGAKIEGVPVDN-------------D-GMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALL  201 (407)
T ss_dssp             HTTTCEEEEEEEET-------------T-EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCEEEEcccCC-------------C-CCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHH
Confidence            45789999999864             2 289999999887    5  78887 5789999999999999665554

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=98.69  E-value=1.4e-08  Score=68.73  Aligned_cols=38  Identities=29%  Similarity=0.359  Sum_probs=34.7

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      | +++++++++++++|++++|+||||.+++.++|.++|+
T Consensus       128 d-~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~  165 (393)
T 1n8p_A          128 L-NDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIK  165 (393)
T ss_dssp             H-HHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred             h-HHHHHhcccCceEEEEECCCCCcceecCHHHHHHHHH
Confidence            5 7888888888999999999999999999999998873

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=98.69  E-value=2.1e-08  Score=65.28  Aligned_cols=54  Identities=33%  Similarity=0.502  Sum_probs=43.8

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCC-------ccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSR-------TKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~-------~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++.+              +|.+|+++|++++.++       +++|++++| ||||.+++.+.+++|+
T Consensus       110 ~~~g~~~~~v~~~--------------~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~  170 (359)
T 1svv_A          110 EATGHKVVTAPCP--------------DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDIS  170 (359)
T ss_dssp             HHTTCCEEEECCT--------------TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHH
T ss_pred             hcCCCeeEEEeCC--------------CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHH
Confidence            4578899999874              5668999999998665       899999999 7999999966655553

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=98.68  E-value=5.4e-08  Score=65.49  Aligned_cols=52  Identities=21%  Similarity=0.273  Sum_probs=45.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++++++..                  |++++++++.+++++|++++|+||||.+++.++|.++|+
T Consensus       126 ~~~g~~~~~~~~~------------------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  177 (398)
T 1gc0_A          126 GEFGVKLRHVDMA------------------DLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIAR  177 (398)
T ss_dssp             GGGTCEEEEECTT------------------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHG
T ss_pred             HHcCCEEEEECCC------------------CHHHHHHhcCCCCeEEEEECCCCCCcccccHHHHHHHHH
Confidence            5568888887753                  689999999889999999999999999999999999874

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=98.66  E-value=3.6e-08  Score=66.38  Aligned_cols=52  Identities=23%  Similarity=0.322  Sum_probs=45.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++++++..                  |++++++++++++++|++++|+||||.+++.+++.++|+
T Consensus       120 ~~~g~~~~~v~~~------------------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~  171 (389)
T 3acz_A          120 PRFGIEVDLIDTS------------------DVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCH  171 (389)
T ss_dssp             HHTTCEEEEECTT------------------CHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             HHcCCEEEEECCC------------------CHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHH
Confidence            4578888888763                  689999999889999999999999999999999998873

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=98.66  E-value=1.9e-08  Score=69.71  Aligned_cols=57  Identities=14%  Similarity=0.053  Sum_probs=49.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc--CCccEEEEeC----CCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS--SRTKLIILNT----PHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~i~l~~----P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++++++++.             ++.+|+++++++++  +++|+|++++    |+||||.+.+.++|.++++
T Consensus       145 ~~~G~~~~~v~~~~-------------~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~  207 (427)
T 3i16_A          145 KEFGINYKQVDLKE-------------DGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVK  207 (427)
T ss_dssp             GGGTCEEEECCCCT-------------TSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHH
T ss_pred             HHcCCEEEEecCcc-------------CCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHH
Confidence            45689999999865             55689999999998  7899999999    9999999999999988863

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=98.64  E-value=5.5e-08  Score=64.92  Aligned_cols=52  Identities=19%  Similarity=0.390  Sum_probs=44.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++..                  |++++++++.+++++|++++|+||||.+++.++|.++|+
T Consensus       113 ~~~g~~~~~~~~~------------------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  164 (386)
T 1cs1_A          113 KRGCYRVLFVDQG------------------DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAR  164 (386)
T ss_dssp             TTTSCEEEEECTT------------------CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHH
T ss_pred             HhcCCEEEEeCCC------------------CHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHH
Confidence            4567788877753                  688999999888999999999999999999999998873

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=98.64  E-value=7.8e-09  Score=69.01  Aligned_cols=40  Identities=33%  Similarity=0.557  Sum_probs=34.1

Q ss_pred             CceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790           30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus        30 ~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      .|.+|+++++  +.+++++|++++||||||.+++.+++++|+
T Consensus       167 ~~~~d~~~l~--~~~~~~~v~~~~p~NptG~~~~~~~~~~l~  206 (417)
T 3g7q_A          167 KYHVDFEHLH--IGEETGMICVSRPTNPTGNVITDEELMKLD  206 (417)
T ss_dssp             EEECCGGGCC--CCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             ccccCHHHhc--cccCceEEEECCCCCCCCCccCHHHHHHHH
Confidence            4678888887  677899999999999999999977777764

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=98.64  E-value=4.1e-08  Score=64.81  Aligned_cols=37  Identities=46%  Similarity=0.709  Sum_probs=33.9

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      |+++|++++.+++++|++++|+||||.+++.+ |.++|
T Consensus       143 d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~-l~~~~  179 (370)
T 2z61_A          143 TVESLEEALSDKTKAIIINSPSNPLGEVIDRE-IYEFA  179 (370)
T ss_dssp             SHHHHHHHCCSSEEEEEEESSCTTTCCCCCHH-HHHHH
T ss_pred             CHHHHHHhcccCceEEEEcCCCCCcCcccCHH-HHHHH
Confidence            68899999988899999999999999999999 88876

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=98.64  E-value=9.8e-09  Score=68.76  Aligned_cols=53  Identities=23%  Similarity=0.421  Sum_probs=39.8

Q ss_pred             ccCCCe-EEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGV-PIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~-~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++ ++.++++.++           .+..+++   + . +++++|++++|+||||.+++.+++++|+
T Consensus       136 ~~~g~~~~~~~~~~~~~-----------~~~~~l~---~-~-~~~~~v~l~~p~nptG~~~~~~~l~~l~  189 (400)
T 3asa_A          136 RLTGAKEIIALPCLQEN-----------AFFPEFP---E-D-THIDILCLCSPNNPTGTVLNKDQLRAIV  189 (400)
T ss_dssp             HHTTCSEEEEEECCGGG-----------TTCCCCC---T-T-CCCSEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCcceEecccchhc-----------CcccChh---h-c-cCccEEEEeCCCCCCCCcCCHHHHHHHH
Confidence            456888 8999987532           4544432   2 1 5789999999999999999998887765

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=98.63  E-value=1e-08  Score=69.52  Aligned_cols=47  Identities=28%  Similarity=0.440  Sum_probs=37.4

Q ss_pred             EEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            9 PIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         9 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++.++++.++           .+..+++++     +++++|++++||||||.+++.+++++|+
T Consensus       189 ~~~~~~~~~~-----------~~~~~~~~~-----~~~~~v~l~~p~NPtG~~~~~~~l~~l~  235 (449)
T 3qgu_A          189 IEYMVCNPDN-----------HFFPDLSKA-----KRTDIIFFCSPNNPTGAAATRAQLTELV  235 (449)
T ss_dssp             EEEEECCGGG-----------TTCCCGGGC-----CCCSEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             eEEEeccccc-----------CCcCChhHc-----CCCCEEEEeCCCCCCCCcCCHHHHHHHH
Confidence            8888887643           565665321     5799999999999999999999888875

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=98.63  E-value=4.9e-08  Score=67.36  Aligned_cols=56  Identities=23%  Similarity=0.285  Sum_probs=48.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccC-CCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKV-FTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             +|.+|+++|++++++++++|++++| ||||.+ .+.++|.++|+
T Consensus       174 ~~~G~~vv~v~~~~-------------~~~~d~~~L~~~i~~~t~~v~~~~p-n~~G~~~~~l~~i~~l~~  230 (474)
T 1wyu_B          174 SMAGYQVREIPSGP-------------EGEVDLEALKRELGPHVAALMLTNP-NTLGLFERRILEISRLCK  230 (474)
T ss_dssp             HHTTCEEEEECBCT-------------TSSBCHHHHHHHCSTTEEEEEECSS-CTTSCCCTTHHHHHHHHH
T ss_pred             HHCCCEEEEecCCC-------------CCCcCHHHHHHhhCCCceEEEEECC-CCCcccCCCHHHHHHHHH
Confidence            46789999999864             6779999999999889999999998 689998 58999988873

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=98.62  E-value=4.2e-08  Score=65.10  Aligned_cols=55  Identities=24%  Similarity=0.463  Sum_probs=47.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.+            +|.+|+++|++++++++++|+   |+||||.+.+.++|.++|+
T Consensus        96 ~~~g~~~~~v~~~~~------------~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~la~  150 (388)
T 1b9h_A           96 QRLGAVTVPVDVDAA------------TYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISA  150 (388)
T ss_dssp             HHTTCEEEEECBCTT------------TCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHH
T ss_pred             HHcCCEEEEEecCCC------------cCCCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHHHH
Confidence            457899999998753            578999999999988888877   9999999999999998873

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=98.61  E-value=4.5e-08  Score=66.75  Aligned_cols=51  Identities=31%  Similarity=0.520  Sum_probs=44.8

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..|+++++++..                  |++++++++.+++++|++++|+||||.+++.++|.++|+
T Consensus       129 ~~g~~~~~v~~~------------------d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~  179 (400)
T 3nmy_A          129 TAGLDFSFVDLT------------------DPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIAR  179 (400)
T ss_dssp             HHCCEEEEECTT------------------SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             hcCeEEEEECCC------------------CHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHH
Confidence            358888888764                  689999999989999999999999999999999999873

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=98.61  E-value=2.4e-08  Score=68.72  Aligned_cols=57  Identities=12%  Similarity=0.125  Sum_probs=49.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCcc------EEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTK------LIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~------~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.+|++.             +|.+|+++|++++.++++      +|++++|+||||.+-+.++|.++|+
T Consensus       200 ~~~G~~v~~v~~d~-------------~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~  262 (486)
T 1js3_A          200 LIGGVKLKAIPSDG-------------KFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICH  262 (486)
T ss_dssp             HHHTCEEEEECCCT-------------TSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred             HhCCCceEEeecCC-------------CCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            45689999999863             788999999999976664      8999999999999999999999874

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=98.59  E-value=4.2e-08  Score=66.99  Aligned_cols=43  Identities=12%  Similarity=0.170  Sum_probs=39.1

Q ss_pred             CceeCHHHHHhhhc---CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           30 DFKLDPAELESKFS---SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        30 ~~~~d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++.+|+++|++++.   +++++|++++|+||||.+++.++|.++|+
T Consensus       196 ~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~  241 (465)
T 3e9k_A          196 EETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQ  241 (465)
T ss_dssp             CSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHH
Confidence            67789999999995   67999999999999999999999998873

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=98.59  E-value=3.4e-08  Score=68.45  Aligned_cols=56  Identities=16%  Similarity=0.121  Sum_probs=49.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc--CCccEEEEeC----CCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS--SRTKLIILNT----PHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~i~l~~----P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.+++ .             ++.+|+++++++++  +++|+|++++    |+||||.+.+.++|.++|+
T Consensus       146 ~~~G~~~~~v~~-~-------------~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~  207 (427)
T 3hvy_A          146 REYGVKYKMVDL-K-------------DGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIR  207 (427)
T ss_dssp             GGGTCEEEECCC-B-------------TTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHH
T ss_pred             HHcCCEEEEecC-C-------------CCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHH
Confidence            446899999988 3             67789999999998  8899999999    9999999999999988873

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=98.55  E-value=1.1e-07  Score=65.38  Aligned_cols=60  Identities=8%  Similarity=0.012  Sum_probs=49.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh-c----CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF-S----SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-~----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.+++.+.+          .+|.+|+++|++++ +    .++.+|++++|+||||.+.+.++|.++|+
T Consensus       194 ~~~G~~~~~v~~~~~~----------~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~  258 (456)
T 2z67_A          194 SFVGMNMRLVETVLDG----------DRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICE  258 (456)
T ss_dssp             HHTTCEEEEECCEEET----------TEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHH
T ss_pred             HHcCCCceEEEEeccC----------CCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH
Confidence            4579999999874211          17899999999998 4    36778889999999999999999999873

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=98.55  E-value=2.3e-08  Score=65.90  Aligned_cols=53  Identities=30%  Similarity=0.567  Sum_probs=41.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             +|.+  +++++..  ++|++++++|+||||.+++.+++.+|++
T Consensus       124 ~~~g~~~~~v~~~~-------------~~~~--~~l~~~~--~~~~v~i~~p~nptG~~~~~~~l~~l~~  176 (360)
T 3hdo_A          124 EVQGARVRTFGLTG-------------DFRI--AGFPERY--EGKVFFLTTPNAPLGPSFPLEYIDELAR  176 (360)
T ss_dssp             HHHTCEEEEECBCT-------------TSSB--TTCCSSB--CSSEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             HHCCCEEEEeeCCC-------------CCCH--HHHHhhc--CCCEEEEeCCCCCCCCCcCHHHHHHHHH
Confidence            45689999999865             4444  4443333  4679999999999999999999999873

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=98.55  E-value=8.6e-08  Score=63.86  Aligned_cols=52  Identities=21%  Similarity=0.169  Sum_probs=41.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc----CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS----SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++.+                  |++++++.+.    +++++|++++|+||||.+++.++|.++|+
T Consensus       150 ~~~g~~~~~v~~~------------------d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  205 (401)
T 2bwn_A          150 KRNAGPKRIFRHN------------------DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAE  205 (401)
T ss_dssp             HHSCCCEEEECTT------------------CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred             HHcCCeEEEEcCC------------------CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHH
Confidence            3467888888753                  4667777665    57899999999999999999999998873

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=98.54  E-value=1e-07  Score=63.44  Aligned_cols=52  Identities=23%  Similarity=0.199  Sum_probs=43.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC----CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS----RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~----~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++..                  |++++++.+.+    ++++|++++|+||||.+++.++|.++|+
T Consensus       145 ~~~g~~~~~v~~~------------------d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~  200 (398)
T 3a2b_A          145 RLSFSKVIKYGHN------------------NMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIAN  200 (398)
T ss_dssp             HHSSSEEEEECTT------------------CHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred             HHcCCceEEeCCC------------------CHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHH
Confidence            4568888888752                  67888888865    7899999999999999999999998873

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=98.54  E-value=4.4e-08  Score=66.03  Aligned_cols=48  Identities=29%  Similarity=0.436  Sum_probs=37.1

Q ss_pred             eEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            8 VPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         8 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++++++++.++           .+..++++     .+++++|++++||||||.+++.+++.+|+
T Consensus       177 ~~~~~~~~~~~-----------~~~~~l~~-----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~  224 (432)
T 3ei9_A          177 NIEYMRCTPEN-----------GFFPDLST-----VGRTDIIFFCSPNNPTGAAATREQLTQLV  224 (432)
T ss_dssp             TCEEEECCGGG-----------TTSCCGGG-----CCCCSEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             ceEEeccCccc-----------CCcCChhh-----CCCCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence            57778876543           45555432     35789999999999999999999998875

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=98.54  E-value=1.1e-07  Score=61.81  Aligned_cols=51  Identities=20%  Similarity=0.328  Sum_probs=43.0

Q ss_pred             CCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHh-hhcC-------CccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            6 GGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELES-KFSS-------RTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         6 g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~-~~~~-------~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      |++++.++.+              ++.+|+++|++ ++.+       ++++|++++||| ||.+++.+.+++|+
T Consensus       108 g~~~~~v~~~--------------~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~  166 (356)
T 1v72_A          108 GAKLMTVDGP--------------AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIG  166 (356)
T ss_dssp             SCEEEECCCG--------------GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHH
T ss_pred             CcEEEEecCC--------------CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHH
Confidence            8888888763              46689999999 8865       689999999987 99999998888775

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=98.54  E-value=1.9e-07  Score=63.16  Aligned_cols=51  Identities=24%  Similarity=0.337  Sum_probs=43.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++++++.                   |++++++++.+++++|++++|+||||.+++.++|.++|+
T Consensus       117 ~~~g~~~~~~~~-------------------~~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~  167 (412)
T 2cb1_A          117 SLMGVTVRYVDP-------------------EPEAVREALSAKTRAVFVETVANPALLVPDLEALATLAE  167 (412)
T ss_dssp             TTTTCEEEEECS-------------------SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             HHcCCEEEEECC-------------------CHHHHHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHH
Confidence            456777777753                   378899999889999999999999999999999998873

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=98.53  E-value=1.2e-07  Score=64.48  Aligned_cols=52  Identities=17%  Similarity=0.149  Sum_probs=44.9

Q ss_pred             ccCCCeEEEe-eCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYI-PLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v-~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++++ +.+                  |++++++++.+++++|++++|+||+|.+++.++|.++|+
T Consensus       119 ~~~g~~~~~~~~~~------------------d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~  171 (421)
T 2ctz_A          119 KRLGIEVRFTSREE------------------RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAR  171 (421)
T ss_dssp             HHTTCEEEECCTTC------------------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             HHcCCEEEEECCCC------------------CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHH
Confidence            4568888887 542                  689999999889999999999999999999999998873

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=98.52  E-value=1.5e-07  Score=62.29  Aligned_cols=52  Identities=10%  Similarity=0.105  Sum_probs=42.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC---CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.+|..                  |++++++.+.+   ++++|++++|+||||.+++.++|.++|+
T Consensus       141 ~~~g~~~~~~~~~------------------d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  195 (384)
T 1bs0_A          141 SLSPSQLRRFAHN------------------DVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQ  195 (384)
T ss_dssp             HTSSSEEEEECTT------------------CHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred             HHcCCCEEEeCCC------------------CHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHHH
Confidence            4568888887742                  57888888754   3788999999999999999999998873

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=98.51  E-value=7.4e-08  Score=64.07  Aligned_cols=52  Identities=17%  Similarity=0.100  Sum_probs=42.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++.                  .|++++++.+.+      ++++|++++|+||||.+++.++|.++|+
T Consensus       147 ~~~g~~~~~~~~------------------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~  204 (401)
T 1fc4_A          147 RLCKAKRYRYAN------------------NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLAD  204 (401)
T ss_dssp             HTSCSEEEEECT------------------TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHH
T ss_pred             HHcCCceEEECC------------------CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHH
Confidence            456778877763                  257788877754      7899999999999999999999998873

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=98.44  E-value=1.5e-07  Score=65.19  Aligned_cols=52  Identities=19%  Similarity=0.168  Sum_probs=45.9

Q ss_pred             eEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            8 VPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         8 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +++.+|++.             +|.+|+++|++++.+      ++++|++++|+||||.+.+.++|.++|+
T Consensus       215 ~v~~v~~~~-------------~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~  272 (504)
T 2okj_A          215 NVILIKCNE-------------RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICE  272 (504)
T ss_dssp             GEEEECBCT-------------TSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHH
T ss_pred             cEEEEecCC-------------CCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHH
Confidence            788898864             788999999999865      5899999999999999999999999873

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=98.43  E-value=9e-08  Score=63.28  Aligned_cols=52  Identities=17%  Similarity=0.116  Sum_probs=41.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++..                  |++++++.+.+      ++++|++++|+||||.+++.++|.++|+
T Consensus       145 ~~~g~~~~~~~~~------------------d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  202 (399)
T 3tqx_A          145 RLCKAQRYRYKNN------------------AMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLAD  202 (399)
T ss_dssp             HSCCSEEEEECTT------------------CTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHH
T ss_pred             HHcCCceeEeCCC------------------CHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHH
Confidence            4567888888753                  34566666643      7999999999999999999999998873

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=98.42  E-value=9.6e-08  Score=62.89  Aligned_cols=54  Identities=28%  Similarity=0.533  Sum_probs=47.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             +|.+|++++++++.+++++|+   |+||||.+.+.++|.++|+
T Consensus        96 ~~~g~~~~~~~~~~-------------~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~~~~i~~~~~  149 (374)
T 3uwc_A           96 VQAGATPVLVDSEN-------------GYVIDPEKIEAAITDKTKAIM---PVHYTGNIADMPALAKIAK  149 (374)
T ss_dssp             HHTTCEEEEECBCT-------------TSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHH
T ss_pred             HHcCCEEEEEecCC-------------CCCcCHHHHHHhCCCCceEEE---EeCCcCCcCCHHHHHHHHH
Confidence            46789999999873             678899999999988888888   9999999999999998873

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=98.42  E-value=1.9e-07  Score=63.41  Aligned_cols=42  Identities=14%  Similarity=0.199  Sum_probs=35.7

Q ss_pred             CceeCHHHHHhhhcC----CccEEEEeCCCCcc-ccCCCHHHHHHHh
Q psy790           30 DFKLDPAELESKFSS----RTKLIILNTPHNPL-GKVFTREELEVIA   71 (72)
Q Consensus        30 ~~~~d~~~l~~~~~~----~~~~i~l~~P~NPt-G~~~~~~~l~~l~   71 (72)
                      ++.+|+++|++++++    ++++|++++|+||+ |.+++.+.+++|+
T Consensus       164 ~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~  210 (467)
T 1ax4_A          164 KGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVY  210 (467)
T ss_dssp             TTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHH
T ss_pred             ccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHH
Confidence            356899999999863    68999999999999 8999988777664

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=98.41  E-value=1.4e-07  Score=63.63  Aligned_cols=55  Identities=24%  Similarity=0.369  Sum_probs=47.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh-cCC--ccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF-SSR--TKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-~~~--~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++++++++++            +|.+|++++++++ +++  +|+|+   |+||+|.+.+.++|.++++
T Consensus        96 ~~~G~~~~~v~~~~~------------~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~i~~la~  153 (377)
T 3ju7_A           96 IWCGLEPYFIDISID------------DWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEEYEELEK  153 (377)
T ss_dssp             HHTTCEEEEECBCTT------------TCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHHHHHHHH
T ss_pred             HHcCCEEEEEecCCc------------cCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHHHHHHHh
Confidence            467999999999753            7889999999988 666  89988   8899999999999998873

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=98.40  E-value=3.2e-07  Score=61.45  Aligned_cols=55  Identities=24%  Similarity=0.427  Sum_probs=47.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++++            +|.+|++++++++.+++++|+   |+||||.+.+.++|.++|+
T Consensus       121 ~~~g~~~~~~~~~~~------------~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~l~~  175 (399)
T 2oga_A          121 SATGATPVPVEPHED------------HPTLDPLLVEKAITPRTRALL---PVHLYGHPADMDALRELAD  175 (399)
T ss_dssp             HHTTCEEEEECBCSS------------SSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHH
T ss_pred             HHCCCEEEEEecCCC------------CCCcCHHHHHHhcCCCCeEEE---EeCCcCCccCHHHHHHHHH
Confidence            457899999998752            577999999999988889888   7899999999999998873

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=98.39  E-value=2.4e-07  Score=64.46  Aligned_cols=52  Identities=15%  Similarity=0.165  Sum_probs=45.7

Q ss_pred             eEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC------CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            8 VPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS------RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         8 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +++.+|++.             ++.+|+++|++++.+      ++++|++++|+||||.+.+.++|.++|+
T Consensus       229 ~v~~v~~~~-------------~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~  286 (515)
T 2jis_A          229 SVRVVKADE-------------RGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQ  286 (515)
T ss_dssp             GEEEECBCT-------------TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred             cEEEEecCC-------------CCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHH
Confidence            788898864             678999999999864      4899999999999999999999999873

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=98.38  E-value=2.8e-08  Score=65.02  Aligned_cols=48  Identities=4%  Similarity=0.117  Sum_probs=39.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHh-hhcCCccEEEEeCCCCccccCCC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELES-KFSSRTKLIILNTPHNPLGKVFT   63 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~-~~~~~~~~i~l~~P~NPtG~~~~   63 (72)
                      +..| +++.++++++            ++.+|++++++ ++++++|+|++++|+||||.+++
T Consensus       111 ~~~g-~~~~v~~~~~------------~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~~~~  159 (360)
T 1w23_A          111 KLLG-ETHIAASTKA------------NSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQ  159 (360)
T ss_dssp             HTTS-EEEEEEECGG------------GTSCSCCCGGGCCCCTTEEEEEEESEETTTTEECS
T ss_pred             HHhC-CeEEeecccc------------cCcCCccchHhhccCCCCCEEEEeCCCCCcceecc
Confidence            4568 9999998752            22367888888 88888999999999999999986

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=98.37  E-value=1.5e-07  Score=62.27  Aligned_cols=55  Identities=31%  Similarity=0.571  Sum_probs=48.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++++++++++            +|.+|++++++++++++++|+   |+||||...+.++|.++|+
T Consensus        93 ~~~G~~~~~~~~~~~------------~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~~~i~~la~  147 (367)
T 3nyt_A           93 ALLGAKPVYVDIDPR------------TYNLDPQLLEAAITPRTKAII---PVSLYGQCADFDAINAIAS  147 (367)
T ss_dssp             HHTTCEEEEECBCTT------------TCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHH
T ss_pred             HHcCCEEEEEecCCc------------cCCcCHHHHHHhcCcCCcEEE---eeCCccChhhHHHHHHHHH
Confidence            457999999999863            588999999999988899988   8999999999999999873

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=98.37  E-value=2.8e-07  Score=64.48  Aligned_cols=57  Identities=21%  Similarity=0.177  Sum_probs=48.7

Q ss_pred             ccCCC---eEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCC------ccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGG---VPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSR------TKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~---~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +.+|+   +++.++.+.             +|.+|+++|++++.++      +++|++++|+||||.+.+.++|.++|+
T Consensus       210 ~~~g~g~~~~~~v~~d~-------------~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~  275 (511)
T 3vp6_A          210 AALGFGTDNVILIKCNE-------------RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICE  275 (511)
T ss_dssp             HHTTSCGGGEEEECBCT-------------TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHH
T ss_pred             HHcCCCCCcEEEeecCC-------------CCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHH
Confidence            34566   888888874             6889999999998654      889999999999999999999999873

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=98.35  E-value=2.4e-07  Score=61.73  Aligned_cols=38  Identities=24%  Similarity=0.224  Sum_probs=34.3

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCcccc-CCCHHHHHHHh
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGK-VFTREELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~-~~~~~~l~~l~   71 (72)
                      |+++|++++++++++|++++|+||||. +++.+.+++|+
T Consensus       172 d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~l~  210 (397)
T 2ord_A          172 NVEDLRRKMSEDVCAVFLEPIQGESGIVPATKEFLEEAR  210 (397)
T ss_dssp             CHHHHHHHCCTTEEEEEECSEECTTTCEECCHHHHHHHH
T ss_pred             CHHHHHHHhhcCeEEEEEecccCCCCcccCCHHHHHHHH
Confidence            789999999888999999999999999 89888887775

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=98.34  E-value=1.1e-07  Score=62.93  Aligned_cols=55  Identities=29%  Similarity=0.490  Sum_probs=47.8

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++++++++++            +|.+|++++++++.+++++|+   |+||||.+.+.++|.++|+
T Consensus        94 ~~~g~~~~~~~~~~~------------~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l~~  148 (373)
T 3frk_A           94 SYTGAKPIFVEPDIR------------TYNIDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRIAK  148 (373)
T ss_dssp             HHHSCEEEEECEETT------------TTEECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHHHH
T ss_pred             HHcCCEEEEEecccc------------ccCcCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHHHH
Confidence            456899999998753            688999999999988899888   8889999999999999873

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=98.34  E-value=1.9e-07  Score=62.07  Aligned_cols=55  Identities=27%  Similarity=0.502  Sum_probs=47.8

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++++            +|.+|++++++++.+++++|+   |+||||.+.+.++|.++|+
T Consensus       114 ~~~g~~~~~~~~~~~------------~~~~d~~~l~~~~~~~~~~v~---~~n~tG~~~~~~~i~~l~~  168 (391)
T 3dr4_A          114 TYCGATPVLVDNDPR------------TFNLDAAKLEALITPRTKAIM---PVHLYGQICDMDPILEVAR  168 (391)
T ss_dssp             HHTTCEEEEECBCTT------------TCSBCGGGSGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHH
T ss_pred             HHCCCEEEEEecCcc------------ccCcCHHHHHHhcCCCceEEE---EECCCCChhhHHHHHHHHH
Confidence            467899999999753            678999999999988899888   7889999999999999873

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=98.31  E-value=5e-07  Score=60.48  Aligned_cols=39  Identities=21%  Similarity=0.274  Sum_probs=34.8

Q ss_pred             CHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |+++|++++.+ ++++|++++|+||||.+++.++|.++|+
T Consensus       174 d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~  213 (409)
T 3kki_A          174 NCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISK  213 (409)
T ss_dssp             CHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHH
Confidence            68999998864 5899999999999999999999998873

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=98.31  E-value=4.6e-07  Score=60.16  Aligned_cols=38  Identities=18%  Similarity=0.207  Sum_probs=34.8

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFT----REELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~----~~~l~~l~   71 (72)
                      |+++|++++++++++|++++|+||||.+++    .++|.++|
T Consensus       171 d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~  212 (392)
T 3ruy_A          171 DLEALKAAITPNTAAFILEPIQGEAGINIPPAGFLKEALEVC  212 (392)
T ss_dssp             CHHHHHHHCCTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHH
T ss_pred             cHHHHHHHhccCeEEEEEeCccCCCCCccCCHHHHHHHHHHH
Confidence            789999999889999999999999999998    78887776

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=98.28  E-value=3.4e-07  Score=62.25  Aligned_cols=51  Identities=22%  Similarity=0.308  Sum_probs=41.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.+++ .             ++.+|+++    +++++++|++++| ||||.+.+.++|.++++
T Consensus       172 ~~~G~~v~~v~~-~-------------~~~~d~~~----i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~  222 (438)
T 1wyu_A          172 EAVGAKLLTLPL-E-------------GGRTPLPE----VGEEVGAVVVQNP-NFLGALEDLGPFAEAAH  222 (438)
T ss_dssp             HHTTCEEEEECC-B-------------TTBCCCCC----CCTTEEEEEEESS-CTTSBCCCHHHHHHHHH
T ss_pred             HHCCCEEEEEcC-c-------------CCccCHHH----hCCCeEEEEEECC-CCCeEEecHHHHHHHHH
Confidence            447999999987 2             44566554    5678999999999 99999999999998873

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=98.23  E-value=1.1e-06  Score=58.58  Aligned_cols=38  Identities=18%  Similarity=0.354  Sum_probs=33.1

Q ss_pred             HHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           35 PAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        35 ~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +++|++++.+++++|++++|+||||.+++.++|.++|+
T Consensus       155 ~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  192 (416)
T 1qz9_A          155 PEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSH  192 (416)
T ss_dssp             GGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHH
T ss_pred             HHHHHHHhCCCceEEEEeccccCcccccCHHHHHHHHH
Confidence            35577778778999999999999999999999998873

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=98.22  E-value=2.3e-07  Score=63.47  Aligned_cols=34  Identities=15%  Similarity=0.221  Sum_probs=29.9

Q ss_pred             CceeCHHHHHhhhcCCccEEEEeCCCCccccCCC
Q psy790           30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFT   63 (72)
Q Consensus        30 ~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~   63 (72)
                      .|.+|+++|++++.+++|+|+++|||||||.+++
T Consensus       181 ~~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~  214 (427)
T 2hox_A          181 VWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRH  214 (427)
T ss_dssp             EEEEEGGGGTTCSCGGGEEEEEESSCTTTCCCCC
T ss_pred             eecCCHHHHHHhhcCCceEEEEcCCCCCcccccH
Confidence            3567888888888778999999999999999998

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=98.21  E-value=1.4e-06  Score=58.50  Aligned_cols=55  Identities=22%  Similarity=0.467  Sum_probs=46.7

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++..            +|.+|++++++++++++++|++   +||||...+.++|.++|+
T Consensus       100 ~~~g~~~~~~~~~~~------------~~~~d~~~l~~~i~~~~~~v~~---~~~~G~~~~~~~i~~~~~  154 (418)
T 2c81_A          100 LNVNALPVFVDVEAD------------TYCIDPQLIKSAITDKTKAIIP---VHLFGSMANMDEINEIAQ  154 (418)
T ss_dssp             HHTTCEEEEECBCTT------------TCSBCHHHHGGGCCTTEEEECC---BCCTTCCCCHHHHHHHHH
T ss_pred             HHcCCEEEEEecCCC------------CCCcCHHHHHHhhCCCCeEEEE---eCCcCCcccHHHHHHHHH
Confidence            457899999998752            6789999999999888999985   468999999999998873

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=98.20  E-value=1.6e-06  Score=57.29  Aligned_cols=55  Identities=16%  Similarity=0.304  Sum_probs=46.7

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++++            +|.+|++++++++.+++++|+++   ||||.+.+.++|.++|+
T Consensus        97 ~~~g~~~~~v~~~~~------------~~~~d~~~l~~~l~~~~~~v~~~---~~~G~~~~~~~i~~l~~  151 (393)
T 1mdo_A           97 VLLGANPVMVDVDRD------------TLMVTPEHIEAAITPQTKAIIPV---HYAGAPADLDAIYALGE  151 (393)
T ss_dssp             HHTTCEEEEECBCTT------------TCCBCHHHHHHHCCTTEEEECCB---CGGGCCCCHHHHHHHHH
T ss_pred             HHCCCEEEEEeccCC------------cCCCCHHHHHHhcCCCceEEEEe---CCCCCcCCHHHHHHHHH
Confidence            457999999998753            57899999999998889999865   58999999999998873

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=98.16  E-value=3.1e-06  Score=56.99  Aligned_cols=55  Identities=18%  Similarity=0.338  Sum_probs=47.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.+            +|.+|+++|++++.+++++|++++   |||...+.++|.++|+
T Consensus       108 ~~~G~~~~~v~~~~~------------~~~~d~~~l~~~i~~~~~~v~~~~---~tG~~~~l~~i~~la~  162 (424)
T 2po3_A          108 RWIGLTPVFADIDPD------------TGNLDPDQVAAAVTPRTSAVVGVH---LWGRPCAADQLRKVAD  162 (424)
T ss_dssp             HHTTCEEEEECBCTT------------TSSBCHHHHGGGCCTTEEEEEEEC---GGGCCCCHHHHHHHHH
T ss_pred             HHcCCEEEEEecCCC------------cCCcCHHHHHHhhCcCCcEEEEEC---CCCCcCCHHHHHHHHH
Confidence            457999999998753            678999999999988899999764   8999999999998873

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=98.15  E-value=1.7e-06  Score=58.57  Aligned_cols=52  Identities=17%  Similarity=0.282  Sum_probs=42.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC----CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS----RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~----~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++.                  .|+++|++++.+    ++++|++++|+||||.+++.++|.++|+
T Consensus       166 ~~~g~~~~~~~~------------------~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~  221 (427)
T 2w8t_A          166 QQGNAEIVRFRH------------------NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAK  221 (427)
T ss_dssp             HHSCSEEEEECT------------------TCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHHH
T ss_pred             HHcCCeeEEeCC------------------CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHH
Confidence            346777777763                  268889888865    7899999999999999999999998873

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=98.14  E-value=1.3e-06  Score=58.48  Aligned_cols=37  Identities=16%  Similarity=0.108  Sum_probs=30.1

Q ss_pred             CHHHHHhhhcCCccE-EEEeCCCCccc-cCCCHHHHHHHh
Q psy790           34 DPAELESKFSSRTKL-IILNTPHNPLG-KVFTREELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~~~~~~-i~l~~P~NPtG-~~~~~~~l~~l~   71 (72)
                      |+++++++ .+++++ |++++|+|||| ...+.++|.++|
T Consensus       130 d~~~l~~~-~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~  168 (374)
T 2aeu_A          130 KVGEILNK-IDKDTLVIITGSTMDLKVIELENFKKVINTA  168 (374)
T ss_dssp             CHHHHHTT-CCTTEEEEEECBCTTSCBCCHHHHHHHHHHH
T ss_pred             CHHHHHhc-CCCccEEEEEccCCCCCCCCcccHHHHHHHH
Confidence            57889888 778999 99999999999 666666666655

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=98.11  E-value=2.1e-06  Score=58.25  Aligned_cols=42  Identities=17%  Similarity=0.230  Sum_probs=35.8

Q ss_pred             CceeCHHHHHhhhc----CCccEEEEeCCCCcc-ccCCCHHHHHHHh
Q psy790           30 DFKLDPAELESKFS----SRTKLIILNTPHNPL-GKVFTREELEVIA   71 (72)
Q Consensus        30 ~~~~d~~~l~~~~~----~~~~~i~l~~P~NPt-G~~~~~~~l~~l~   71 (72)
                      .+.+|+++|+++++    +++++|++++|+||+ |.+++.+.+++|+
T Consensus       164 ~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~  210 (467)
T 2oqx_A          164 KGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMY  210 (467)
T ss_dssp             TTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHH
Confidence            46789999999986    379999999999998 9999988776664

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=98.08  E-value=9.6e-06  Score=53.90  Aligned_cols=55  Identities=18%  Similarity=0.235  Sum_probs=46.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+++++++++++            +|.+|+++|++++++++++|+++|   ++|...+.++|.++|+
T Consensus        98 ~~~g~~~~~~~~~~~------------~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~~l~~  152 (390)
T 3b8x_A           98 QQYGLRVKFVDIDIN------------TLNIDIESLKEAVTDSTKAILTVN---LLGNPNNFDEINKIIG  152 (390)
T ss_dssp             HHTTCEEEEECBCTT------------TCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCCHHHHHHHHT
T ss_pred             HHcCCEEEEEecCcc------------ccCcCHHHHHHHhCcCCeEEEEEC---CccChhhHHHHHHHHH
Confidence            457899999998763            578999999999988899999874   6777899999999874

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=98.07  E-value=2.9e-06  Score=58.76  Aligned_cols=57  Identities=14%  Similarity=0.139  Sum_probs=48.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCC------ccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSR------TKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.+|++.             ++.+|+++|++++.++      +.+|+++.++|+||.+-+.++|.++|+
T Consensus       206 ~~~g~~~~~v~~~~-------------~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~  268 (481)
T 4e1o_A          206 LISLVKMKFLPVDD-------------NFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICA  268 (481)
T ss_dssp             HHHTCEEEEECCCT-------------TSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred             HhCCCceEEEEcCC-------------CCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHH
Confidence            34688999999864             7889999999998643      678999999999999999999999873

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=98.05  E-value=2e-06  Score=59.40  Aligned_cols=52  Identities=12%  Similarity=0.088  Sum_probs=43.8

Q ss_pred             eEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCC----cc--EEEEeCCCCccccCCCHHHHHHHhC
Q psy790            8 VPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSR----TK--LIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         8 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~----~~--~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +++.+|++.             +|.+|+++|++++.++    ++  +|++++|+||||.+.+.++|.++|+
T Consensus       228 ~v~~v~~~~-------------~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~  285 (497)
T 2qma_A          228 AVMTVDANA-------------DGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAV  285 (497)
T ss_dssp             GEEEECBCT-------------TSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred             cEEEEecCC-------------CCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHH
Confidence            788898864             6789999999988643    44  8889999999999999999999874

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=98.03  E-value=1.9e-06  Score=56.66  Aligned_cols=39  Identities=18%  Similarity=0.084  Sum_probs=33.0

Q ss_pred             eCHHHHHhhhcCCccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790           33 LDPAELESKFSSRTKLIILNTPHNPLGKVFT----REELEVIA   71 (72)
Q Consensus        33 ~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~----~~~l~~l~   71 (72)
                      .|+++|++++++++++|++++|+||||.+++    .++|.++|
T Consensus       160 ~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~  202 (375)
T 2eh6_A          160 NDIDSVYKLLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEIC  202 (375)
T ss_dssp             TCHHHHHTTCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHH
T ss_pred             chHHHHHHHhcCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHH
Confidence            4899999999888999999999999999976    55555554

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=98.03  E-value=5.4e-06  Score=57.50  Aligned_cols=41  Identities=24%  Similarity=0.139  Sum_probs=37.4

Q ss_pred             CceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           30 DFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        30 ~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +|.+|+++|++++. +++|+|++ +++||+ .+++.++|.+||+
T Consensus       177 ~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~dl~~i~~ia~  218 (483)
T 1rv3_A          177 TGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLDYGRLRKIAD  218 (483)
T ss_dssp             TCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCCHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCCHHHHHHHHH
Confidence            68899999999997 78999999 999999 9999999999873

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=98.02  E-value=7.7e-06  Score=54.71  Aligned_cols=54  Identities=20%  Similarity=0.341  Sum_probs=46.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC---CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             +|.+|++++++++.+   ++++|++++   |||...+.++|.++|+
T Consensus        90 ~~~g~~~~~v~~~~-------------~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~  146 (394)
T 1o69_A           90 CYLKAKPVFIDCDE-------------TYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICK  146 (394)
T ss_dssp             HHTTCEEEEECBCT-------------TSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHH
T ss_pred             HHcCCEEEEEEeCC-------------CCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHH
Confidence            45789999999873             788999999998875   799999885   8999999999998873

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=98.02  E-value=2.7e-06  Score=55.69  Aligned_cols=54  Identities=26%  Similarity=0.379  Sum_probs=45.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++++.             +..+|+++|++++.+++++|++++|   ||.+.+.++|.++|+
T Consensus        92 ~~~g~~~~~~~~~~-------------~~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i~~l~~  145 (375)
T 2fnu_A           92 LESGYTPVFAGIKN-------------DGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLCK  145 (375)
T ss_dssp             HHTTCEEEECCBCT-------------TSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHHH
T ss_pred             HHCCCEEEEeccCC-------------CCCCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHHHHHHH
Confidence            45789999999875             3367899999999888999998877   999999999998873

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=98.00  E-value=4.1e-06  Score=58.06  Aligned_cols=56  Identities=9%  Similarity=-0.018  Sum_probs=48.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCC------ccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSR------TKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.||++.             ++ +|+++|++++.++      +.+|+++.++|+||.+-+.++|.++|+
T Consensus       200 ~~~g~~~~~v~~d~-------------~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~  261 (475)
T 3k40_A          200 LLGGVKLRSVQSEN-------------HR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGN  261 (475)
T ss_dssp             HHHTCEEEEECCBT-------------TB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred             HHcCCceEEEECCC-------------CC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHH
Confidence            45688999999864             67 9999999998653      668899999999999999999999874

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=98.00  E-value=1.3e-05  Score=53.21  Aligned_cols=41  Identities=20%  Similarity=0.277  Sum_probs=36.2

Q ss_pred             CceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           30 DFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        30 ~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +|.+|+++|++++. .++++|++++|+|  |.+++.++|.++|+
T Consensus       148 ~~~~d~~~l~~~i~~~~~~~v~~~~~~~--G~~~~l~~i~~l~~  189 (417)
T 3n0l_A          148 DGRIDYEKVREIAKKEKPKLIVCGASAY--ARVIDFAKFREIAD  189 (417)
T ss_dssp             TSSCCHHHHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHhcCCeEEEECCccc--CccCCHHHHHHHHH
Confidence            67899999999997 6899999999887  89999999998873

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=97.98  E-value=6.6e-06  Score=54.50  Aligned_cols=41  Identities=20%  Similarity=0.268  Sum_probs=35.6

Q ss_pred             CceeCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           30 DFKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        30 ~~~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +|.+|++++++++.+ ++++|++++|+||  ...+.++|.++|+
T Consensus       147 ~~~~d~~~l~~~l~~~~~~~v~~~~p~~~--~~~~l~~i~~l~~  188 (407)
T 2dkj_A          147 TELIDLEEVRRLALEHRPKVIVAGASAYP--RFWDFKAFREIAD  188 (407)
T ss_dssp             TSSCCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHH
T ss_pred             cCccCHHHHHHHHhhcCCeEEEEeccccC--CCCCHHHHHHHHH
Confidence            677899999999874 8999999999998  7889999988873

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=97.97  E-value=3.3e-06  Score=56.81  Aligned_cols=39  Identities=13%  Similarity=0.116  Sum_probs=29.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFT   63 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~   63 (72)
                      +..|++++.++++.+            .+.          .+++|+|+++|||||||.+++
T Consensus       137 ~~~g~~~~~~~~d~~------------~l~----------~~~~k~v~l~~p~NPtG~~~~  175 (391)
T 3bwn_A          137 TYVRSGMYKWEGDAW------------GFD----------KKGPYIELVTSPNNPDGTIRE  175 (391)
T ss_dssp             HTTCBTTEEEEEEST------------TCC----------CCSCEEEEEESSCTTTCCCCC
T ss_pred             HHcCCeEEEecCCHH------------HcC----------CCCCEEEEECCCCCCCchhHH
Confidence            456777777776543            222          257899999999999999986

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=97.94  E-value=1.1e-05  Score=59.23  Aligned_cols=57  Identities=9%  Similarity=0.222  Sum_probs=45.7

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCcee---------CHHHHHhhhcC--Ccc---EEEEeCCCCccccCCCHHHHH
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKL---------DPAELESKFSS--RTK---LIILNTPHNPLGKVFTREELE   68 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~---------d~~~l~~~~~~--~~~---~i~l~~P~NPtG~~~~~~~l~   68 (72)
                      +..|+++++++....            .|.+         |++++++++.+  ++|   ++++++| ||+|.+++.++|.
T Consensus       253 ~lsGa~pv~v~~~~~------------~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~  319 (715)
T 3n75_A          253 MMSDVTPIYFRPTRN------------AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIK  319 (715)
T ss_dssp             HHSCCEEEEECCCBC------------TTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHH
T ss_pred             HHcCCEEEEEecccc------------ccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHH
Confidence            467999999987642            3433         89999999863  344   8999999 9999999999999


Q ss_pred             HHhC
Q psy790           69 VIAK   72 (72)
Q Consensus        69 ~l~~   72 (72)
                      ++++
T Consensus       320 ela~  323 (715)
T 3n75_A          320 KTLD  323 (715)
T ss_dssp             HHCC
T ss_pred             HHhC
Confidence            9874

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=97.88  E-value=9.9e-06  Score=59.50  Aligned_cols=57  Identities=19%  Similarity=0.361  Sum_probs=44.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCc----ee-----CHHHHHhhhcC--Ccc--------EEEEeCCCCccccCCC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADF----KL-----DPAELESKFSS--RTK--------LIILNTPHNPLGKVFT   63 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~----~~-----d~~~l~~~~~~--~~~--------~i~l~~P~NPtG~~~~   63 (72)
                      +..|+++++++....            .|    .+     |+++|++++.+  ++|        +++++|| ||+|.+++
T Consensus       263 ~~~G~~~v~v~~~~~------------~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d  329 (755)
T 2vyc_A          263 MLTGAKPVYMVPSRN------------RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN  329 (755)
T ss_dssp             HHHCCEEEEECCCBC------------TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC
T ss_pred             HHcCCEEEEEeCCCC------------ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC
Confidence            346899999987642            22    24     89999998853  454        9999999 79999999


Q ss_pred             HHHHHHHhC
Q psy790           64 REELEVIAK   72 (72)
Q Consensus        64 ~~~l~~l~~   72 (72)
                      .++|.++|+
T Consensus       330 l~~I~~ia~  338 (755)
T 2vyc_A          330 AKEAQDLLE  338 (755)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            999999875

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=97.86  E-value=1.5e-05  Score=52.88  Aligned_cols=38  Identities=18%  Similarity=0.180  Sum_probs=32.9

Q ss_pred             eCHHHHHhhhcCCccEEEEeCCCCccccCC--CHHHHHHHh
Q psy790           33 LDPAELESKFSSRTKLIILNTPHNPLGKVF--TREELEVIA   71 (72)
Q Consensus        33 ~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~--~~~~l~~l~   71 (72)
                      .|+++|++++.+++++|+++ |+||+|.++  +.+.+++|+
T Consensus       171 ~d~~~l~~~l~~~~~~v~~~-p~np~g~~~~~~~~~l~~l~  210 (406)
T 4adb_A          171 NDINSASALIDDSTCAVIVE-PIQGEGGVVPASNAFLQGLR  210 (406)
T ss_dssp             TCHHHHHTTCSTTEEEEEEC-SEETTTTSEECCHHHHHHHH
T ss_pred             CcHHHHHHHhcCCeEEEEEe-CCcCCCCCccCCHHHHHHHH
Confidence            47999999998889999999 999999998  777777664

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=97.77  E-value=1.2e-05  Score=59.09  Aligned_cols=62  Identities=13%  Similarity=0.166  Sum_probs=45.6

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHH-----HhhhcCC------c----cEEEEeCCCCccccCCCHHH
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAEL-----ESKFSSR------T----KLIILNTPHNPLGKVFTREE   66 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l-----~~~~~~~------~----~~i~l~~P~NPtG~~~~~~~   66 (72)
                      ++..|+++++++.....       . .-.+.+|+++|     ++++.++      +    |++++++| ||+|.+++.++
T Consensus       231 ~~l~Ga~~v~v~~~~~~-------~-~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~  301 (730)
T 1c4k_A          231 LAMAGGRPVYLQTNRNP-------Y-GFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHE  301 (730)
T ss_dssp             TTTTCCEEEEECEEECT-------T-CCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHH
T ss_pred             HHHCCCEEEEEeCCccc-------c-CccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHH
Confidence            45679999998875310       0 00133677777     8888655      5    89999999 69999999999


Q ss_pred             HHHHhC
Q psy790           67 LEVIAK   72 (72)
Q Consensus        67 l~~l~~   72 (72)
                      |.++|+
T Consensus       302 I~~la~  307 (730)
T 1c4k_A          302 VVKRIG  307 (730)
T ss_dssp             HHHHHG
T ss_pred             HHHHHH
Confidence            999874

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=97.77  E-value=5.6e-05  Score=50.17  Aligned_cols=41  Identities=20%  Similarity=0.284  Sum_probs=35.0

Q ss_pred             CceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           30 DFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        30 ~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      .|.+|+++|++++. +++++|++++|+||  ...+.++|.++|+
T Consensus       156 ~~~~d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~i~~l~~  197 (425)
T 3ecd_A          156 TMLIDYDQVEALAQQHKPSLIIAGFSAYP--RKLDFARFRAIAD  197 (425)
T ss_dssp             TSSCCHHHHHHHHHHHCCSEEEEECSCCC--SCCCHHHHHHHHH
T ss_pred             cCccCHHHHHHHHhhcCCcEEEEccccCC--CcCCHHHHHHHHH
Confidence            57899999999986 58999999999996  5778889988873

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=97.70  E-value=1.6e-05  Score=54.60  Aligned_cols=57  Identities=19%  Similarity=0.204  Sum_probs=37.3

Q ss_pred             ccCCCeEEEeeC--CCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPL--QDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~--~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ...|+++++++.  +.+.    |     -.+.+|+++|   ..+++++|++++ +|++|.+++.++|.++|+
T Consensus       114 ~~~G~~~~~v~~~~~~~~----~-----~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~  172 (446)
T 2x3l_A          114 DISQQEGHFIETHQSPLT----N-----HYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFNVEEVIKSLH  172 (446)
T ss_dssp             HHHTCCEEECEEEECTTT----S-----SEEEEEC----------CCEEEEES-SCTTSCCCCHHHHHHHHH
T ss_pred             HHcCCeEEEEeCeecccc----C-----cCCCCCHHHH---cCCCceEEEEEC-CCCCeEecCHHHHHHHHH
Confidence            346888999988  4310    0     0166788877   456799999999 566999999999998873

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=97.67  E-value=5.6e-05  Score=50.08  Aligned_cols=41  Identities=22%  Similarity=0.174  Sum_probs=35.0

Q ss_pred             CceeCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           30 DFKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        30 ~~~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++.+|+++|++++.+ ++++|++++|+||+  ..+.++|.++|+
T Consensus       153 ~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~--~~~l~~l~~l~~  194 (420)
T 3gbx_A          153 SGKIDYDEMAKLAKEHKPKMIIGGFSAYSG--VVDWAKMREIAD  194 (420)
T ss_dssp             TCSCCHHHHHHHHHHHCCSEEEECCTTCCS--CCCHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHhcCCeEEEEecCccCC--ccCHHHHHHHHH
Confidence            677899999999975 69999999999974  788999988873

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=97.66  E-value=9.3e-05  Score=50.47  Aligned_cols=41  Identities=20%  Similarity=0.129  Sum_probs=35.2

Q ss_pred             CceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           30 DFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        30 ~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++.+|++++++++. .++++|++++|+||++.  +.++|.++|+
T Consensus       169 ~~~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~--~l~~i~~l~~  210 (447)
T 3h7f_A          169 THLIDMDAVRATALEFRPKVIIAGWSAYPRVL--DFAAFRSIAD  210 (447)
T ss_dssp             TCSCCHHHHHHHHHHHCCSEEEEECSSCCSCC--CHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHhcCCeEEEEcCCCCCCcc--CHHHHHHHHH
Confidence            67799999999984 47899999999999887  8899988873

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=97.62  E-value=2.6e-05  Score=51.71  Aligned_cols=39  Identities=18%  Similarity=0.117  Sum_probs=31.7

Q ss_pred             eCHHHHHhhhcCCccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790           33 LDPAELESKFSSRTKLIILNTPHNPLGKVFT----REELEVIA   71 (72)
Q Consensus        33 ~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~----~~~l~~l~   71 (72)
                      .|+++|++++++++++|+++.++||||.+++    .++|.++|
T Consensus       173 ~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~  215 (395)
T 1vef_A          173 NDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREIT  215 (395)
T ss_dssp             TCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHH
T ss_pred             CcHHHHHHHhccCEEEEEEeCccCCCCccCCCHHHHHHHHHHH
Confidence            4799999999888998887777899999876    66666665

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=97.62  E-value=3.2e-06  Score=56.43  Aligned_cols=46  Identities=17%  Similarity=0.185  Sum_probs=34.5

Q ss_pred             CCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHH
Q psy790            6 GGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEV   69 (72)
Q Consensus         6 g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~   69 (72)
                      |++++.++++.             ++..+.     .+.+++|+|++++|+||||.+++.+++.+
T Consensus       144 g~~~~~v~~~~-------------g~~~~~-----~i~~~~~~v~~~~~~nptG~~~~~~~i~~  189 (398)
T 2fyf_A          144 VGEPIIITSDP-------------GSAPEP-----QTDPSVDVIAWAHNETSTGVAVAVRRPEG  189 (398)
T ss_dssp             SCCCEEEECCT-------------TCCCCC-----CCCTTCSEEEEESEETTTTEECCCCCCTT
T ss_pred             CCceEEEecCC-------------CCCCCc-----cccCCCCEEEEeCcCCCcceecchHHhhh
Confidence            78888888762             232332     24668999999999999999999877654

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=97.57  E-value=4.4e-06  Score=54.85  Aligned_cols=49  Identities=12%  Similarity=0.087  Sum_probs=33.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFT   63 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~   63 (72)
                      +..| +++.++++.+.+         ..+.+|.++++  +++++|+|++++|+||||.+++
T Consensus       112 ~~~g-~~~~v~~~~~~~---------~~~~~~~~~~~--i~~~t~~v~~~~~~n~tG~~~~  160 (362)
T 2c0r_A          112 KLIG-DTHVAASSEASN---------YMTLPKLQEIQ--LQDNAAYLHLTSNETIEGAQFK  160 (362)
T ss_dssp             HHHS-CEEEEEECGGGT---------TCSCCCGGGCC--CCTTEEEEEEESEETTTTEECS
T ss_pred             HHhC-CeEEEecccccc---------cccCCCHHHcc--cCCCcCEEEEeCCcCccceecc
Confidence            3457 888888863210         02334555443  5778999999999999999643

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=97.47  E-value=7.5e-05  Score=49.70  Aligned_cols=40  Identities=10%  Similarity=0.181  Sum_probs=33.9

Q ss_pred             eeCHHHHHhhhc-CCccEEEEeCCCCccccCCC---HHHHHHHh
Q psy790           32 KLDPAELESKFS-SRTKLIILNTPHNPLGKVFT---REELEVIA   71 (72)
Q Consensus        32 ~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~---~~~l~~l~   71 (72)
                      .+|++++++++. .++++|++++++||||.+++   .++|.++|
T Consensus       121 ~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~  164 (379)
T 3ke3_A          121 PVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAV  164 (379)
T ss_dssp             CCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHH
Confidence            579999999984 58999999999999999999   66666655

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=97.19  E-value=0.00021  Score=47.60  Aligned_cols=41  Identities=10%  Similarity=0.048  Sum_probs=27.9

Q ss_pred             CceeCHHHHHhhhc-----CCccEEEE-eCCCCccc-cCCCHHHHHHHh
Q psy790           30 DFKLDPAELESKFS-----SRTKLIIL-NTPHNPLG-KVFTREELEVIA   71 (72)
Q Consensus        30 ~~~~d~~~l~~~~~-----~~~~~i~l-~~P~NPtG-~~~~~~~l~~l~   71 (72)
                      .+.+|+++|++++.     +++++|++ ++|+| || .+++.+.+++|+
T Consensus       179 ~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~  226 (426)
T 1sff_A          179 SEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLR  226 (426)
T ss_dssp             CHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHH
Confidence            45678999998885     45677766 35688 99 555655555443

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=97.13  E-value=0.00081  Score=44.34  Aligned_cols=51  Identities=16%  Similarity=0.170  Sum_probs=38.6

Q ss_pred             eEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            8 VPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         8 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +++.+++++.            ++.+|++++++++.+ ++++|++ +|+|+ |...+.++|.++|+
T Consensus       137 ~~~~~~~~~~------------~~~~d~~~l~~~i~~~~~~~v~~-~~~~~-~~~~~l~~i~~l~~  188 (405)
T 2vi8_A          137 NFVAYGVDPE------------THVIDYDDVREKARLHRPKLIVA-AAAAY-PRIIDFAKFREIAD  188 (405)
T ss_dssp             EEEEECBCTT------------TCSBCHHHHHHHHHHHCCSEEEE-CCSSC-CSCCCHHHHHHHHH
T ss_pred             EEEecccccc------------cCCcCHHHHHHHHHhcCCeEEEE-eCCCC-CccCCHHHHHHHHH
Confidence            6777776532            677899999999875 7888877 56664 57778999988873

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=97.02  E-value=0.00034  Score=47.21  Aligned_cols=38  Identities=16%  Similarity=0.150  Sum_probs=31.6

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCcccc-CCCHHHHHHHh
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGK-VFTREELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~-~~~~~~l~~l~   71 (72)
                      |+++|++++.+++++|+++.++|++|. +++.+.+++|+
T Consensus       190 d~~~le~~i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~  228 (420)
T 2pb2_A          190 DLHAVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLR  228 (420)
T ss_dssp             CHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHH
T ss_pred             CHHHHHHHhccCceEEEEeCCcCCCCeecCCHHHHHHHH
Confidence            789999999888999999988998884 57877776664

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=97.01  E-value=0.00074  Score=44.70  Aligned_cols=38  Identities=21%  Similarity=0.204  Sum_probs=30.1

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFT----REELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~----~~~l~~l~   71 (72)
                      |+++|++++++++++|+++.++|++|.+.+    .++|.++|
T Consensus       168 d~~~l~~~l~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~  209 (395)
T 3nx3_A          168 DISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLC  209 (395)
T ss_dssp             CHHHHHTTCCTTEEEEEEESEECTTSCEECCHHHHHHHHHHH
T ss_pred             CHHHHHHhccCCeEEEEEeCccCCCCcccCCHHHHHHHHHHH
Confidence            789999999888999999888888888855    44455544

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=96.95  E-value=0.00073  Score=45.45  Aligned_cols=37  Identities=16%  Similarity=0.065  Sum_probs=22.8

Q ss_pred             eCHHHHH-hhhc-----CCccEEEEeCCC-CccccCC-CHHHHHHH
Q psy790           33 LDPAELE-SKFS-----SRTKLIILNTPH-NPLGKVF-TREELEVI   70 (72)
Q Consensus        33 ~d~~~l~-~~~~-----~~~~~i~l~~P~-NPtG~~~-~~~~l~~l   70 (72)
                      +|+++|+ +++.     +++ .+++++|+ ||||..+ +.+.+++|
T Consensus       194 ~~~~~l~~~~i~~~~~~~~~-~~vi~~p~~~~tG~~~~~~~~l~~l  238 (419)
T 2eo5_A          194 RVIEFIEDYIFVNLVPPEEV-AGIFFEPIQGEGGYVIPPKNFFAEL  238 (419)
T ss_dssp             HHHHHHHHTHHHHTCCGGGE-EEEEECSSBTTTTSBCCCTTHHHHH
T ss_pred             HHHHHHHHHHHhhccCCCCE-EEEEEeCccCCCCCccCCHHHHHHH
Confidence            4688998 8875     234 45556775 5789754 54444443

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=96.93  E-value=0.00036  Score=46.88  Aligned_cols=39  Identities=10%  Similarity=0.151  Sum_probs=25.9

Q ss_pred             eeCHHHHHhhhc---CCccEEEEeCC--CCccccCCC----HHHHHHHh
Q psy790           32 KLDPAELESKFS---SRTKLIILNTP--HNPLGKVFT----REELEVIA   71 (72)
Q Consensus        32 ~~d~~~l~~~~~---~~~~~i~l~~P--~NPtG~~~~----~~~l~~l~   71 (72)
                      .+|+++|++++.   +++++ ++++|  +||||.+++    .++|.++|
T Consensus       188 ~~d~~~l~~~l~~~~~~~~~-vi~~p~~~n~tG~~~~~~~~l~~i~~l~  235 (429)
T 1s0a_A          188 ERDMVGFARLMAAHRHEIAA-VIIEPIVQGAGGMRMYHPEWLKRIRKIC  235 (429)
T ss_dssp             GGGGHHHHHHHHHHTTTEEE-EEECSSEECTTTCEEBCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEE-EEEeecccCCCCcccCCHHHHHHHHHHH
Confidence            478899998886   34555 45566  599997665    44455443

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=96.91  E-value=0.001  Score=46.77  Aligned_cols=41  Identities=17%  Similarity=0.160  Sum_probs=34.6

Q ss_pred             CceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           30 DFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        30 ~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++.+|++++++++. .++|+|+++.|+||+  ..+.+++.+||+
T Consensus       187 ~~~iD~d~le~~l~~~~~klIi~~~s~~~~--~~dl~~i~~ia~  228 (490)
T 2a7v_A          187 TGLIDYNQLALTARLFRPRLIIAGTSAYAR--LIDYARMREVCD  228 (490)
T ss_dssp             TCSBCHHHHHHHHHHHCCSEEEECCSSCCS--CCCHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHhhcCCcEEEEcCCCCCC--cccHHHHHHHHH
Confidence            67899999999885 478999999999974  678999998873

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=96.69  E-value=0.0012  Score=44.29  Aligned_cols=38  Identities=8%  Similarity=-0.011  Sum_probs=24.9

Q ss_pred             eCHHHHHhhhc----CCccEEEEeCC-CCccccCC-C---HHHHHHHh
Q psy790           33 LDPAELESKFS----SRTKLIILNTP-HNPLGKVF-T---REELEVIA   71 (72)
Q Consensus        33 ~d~~~l~~~~~----~~~~~i~l~~P-~NPtG~~~-~---~~~l~~l~   71 (72)
                      +|+++|++++.    +++++ ++++| +||||..+ +   .++|.++|
T Consensus       187 ~d~~~le~~l~~~~~~~~~~-vi~~p~~~~~G~~~~~~~~l~~l~~l~  233 (433)
T 1zod_A          187 AELDYAFDLIDRQSSGNLAA-FIAEPILSSGGIIELPDGYMAALKRKC  233 (433)
T ss_dssp             HHHHHHHHHHHHHCCSCEEE-EEECSEETTTTCEECCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCeEE-EEEccccCCCCcccCCHHHHHHHHHHH
Confidence            46899998886    34555 45667 58899755 4   55555554

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=96.67  E-value=0.0012  Score=44.38  Aligned_cols=38  Identities=11%  Similarity=0.078  Sum_probs=31.5

Q ss_pred             CHHHHHhhh----cCCccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790           34 DPAELESKF----SSRTKLIILNTPHNPLGKVFT----REELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~----~~~~~~i~l~~P~NPtG~~~~----~~~l~~l~   71 (72)
                      |+++|++++    .+++++|+++.++|++|.+++    .++|.++|
T Consensus       186 d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~  231 (439)
T 3dxv_A          186 ILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADIC  231 (439)
T ss_dssp             HHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHH
Confidence            689999988    456788888888999999988    77777776

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=96.51  E-value=0.0019  Score=43.32  Aligned_cols=38  Identities=21%  Similarity=0.238  Sum_probs=30.6

Q ss_pred             CHHHHHhhhcC---CccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790           34 DPAELESKFSS---RTKLIILNTPHNPLGKVFT----REELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~~---~~~~i~l~~P~NPtG~~~~----~~~l~~l~   71 (72)
                      |+++|++++.+   ++++|+++.++|++|.+.+    .++|.++|
T Consensus       185 d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~  229 (427)
T 3fq8_A          185 DLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREIT  229 (427)
T ss_dssp             CHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHH
Confidence            78999988864   5677777777888999998    77887776

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=96.48  E-value=0.0013  Score=45.27  Aligned_cols=39  Identities=15%  Similarity=0.254  Sum_probs=30.2

Q ss_pred             eCHHHHHhhhc---CCccEEEEeC-CCCccccCCC----HHHHHHHh
Q psy790           33 LDPAELESKFS---SRTKLIILNT-PHNPLGKVFT----REELEVIA   71 (72)
Q Consensus        33 ~d~~~l~~~~~---~~~~~i~l~~-P~NPtG~~~~----~~~l~~l~   71 (72)
                      .|+++|++++.   +++++|+++. ++||+|.+++    .++|.++|
T Consensus       218 ~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~  264 (457)
T 3tfu_A          218 AYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDIC  264 (457)
T ss_dssp             HHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHH
Confidence            37889998886   5678888888 8999999885    55566655

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=96.41  E-value=0.0043  Score=41.86  Aligned_cols=36  Identities=17%  Similarity=0.175  Sum_probs=25.7

Q ss_pred             HHHHHhhhc----CCccEEEEeCCC-CccccCCC----HHHHHHHh
Q psy790           35 PAELESKFS----SRTKLIILNTPH-NPLGKVFT----REELEVIA   71 (72)
Q Consensus        35 ~~~l~~~~~----~~~~~i~l~~P~-NPtG~~~~----~~~l~~l~   71 (72)
                      +++|++++.    +++++ ++++|+ |+||.+++    .++|.++|
T Consensus       205 ~~~le~~l~~~~~~~~~~-vi~~p~~~~tG~~~~~~~~l~~l~~l~  249 (449)
T 3a8u_X          205 ADELLKLIELHDASNIAA-VFVEPLAGSAGVLVPPEGYLKRNREIC  249 (449)
T ss_dssp             HHHHHHHHHHHCGGGEEE-EEECSSBTTTTCBCCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEE-EEEcCccCCCCCccCCHHHHHHHHHHH
Confidence            889988886    34544 456664 77998777    77777766

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=96.17  E-value=0.0039  Score=42.17  Aligned_cols=36  Identities=8%  Similarity=0.141  Sum_probs=26.8

Q ss_pred             HHHHHhhhc----CCccEEEEeCC-CCccccCCC----HHHHHHHh
Q psy790           35 PAELESKFS----SRTKLIILNTP-HNPLGKVFT----REELEVIA   71 (72)
Q Consensus        35 ~~~l~~~~~----~~~~~i~l~~P-~NPtG~~~~----~~~l~~l~   71 (72)
                      +++|++++.    .++++|+++.+ +| +|.+++    .++|.++|
T Consensus       201 ~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~  245 (452)
T 3n5m_A          201 VKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETC  245 (452)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHH
Confidence            788988886    56677887777 89 998775    55555554

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=96.14  E-value=0.0019  Score=44.00  Aligned_cols=39  Identities=10%  Similarity=0.109  Sum_probs=26.4

Q ss_pred             eCHHHHHhhhc---CCccEEEEeCCCCcccc-CCCHHHHHHHh
Q psy790           33 LDPAELESKFS---SRTKLIILNTPHNPLGK-VFTREELEVIA   71 (72)
Q Consensus        33 ~d~~~l~~~~~---~~~~~i~l~~P~NPtG~-~~~~~~l~~l~   71 (72)
                      .++++|++++.   +++++|+++.++||+|. +++.+.+++|+
T Consensus       216 ~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~  258 (449)
T 2cjg_A          216 EALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMR  258 (449)
T ss_dssp             HHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHH
Confidence            45566888874   56777665554799995 77766666654

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=96.14  E-value=0.0041  Score=41.81  Aligned_cols=38  Identities=21%  Similarity=0.260  Sum_probs=25.7

Q ss_pred             CHHHHHhhhcC---CccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790           34 DPAELESKFSS---RTKLIILNTPHNPLGKVFT----REELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~~---~~~~i~l~~P~NPtG~~~~----~~~l~~l~   71 (72)
                      |+++|++++..   ++++|+++..+|+||.+++    .++|.++|
T Consensus       189 d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~  233 (434)
T 2epj_A          189 DVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLS  233 (434)
T ss_dssp             CHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHH
Confidence            78899888853   4555554444577999886    66666655

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=96.01  E-value=0.0051  Score=41.26  Aligned_cols=38  Identities=13%  Similarity=0.206  Sum_probs=25.1

Q ss_pred             CHHHHHhhhc---CCccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790           34 DPAELESKFS---SRTKLIILNTPHNPLGKVFT----REELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~----~~~l~~l~   71 (72)
                      |+++|++++.   +++++|+++.++|++|.+.+    .++|.++|
T Consensus       188 d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~  232 (434)
T 3l44_A          188 NVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELV  232 (434)
T ss_dssp             CHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHH
T ss_pred             cHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHH
Confidence            7889988885   34555555555666677775    66666665

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=95.94  E-value=0.0039  Score=42.95  Aligned_cols=38  Identities=18%  Similarity=0.114  Sum_probs=28.5

Q ss_pred             CHHHHHhhhcC------CccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790           34 DPAELESKFSS------RTKLIILNTPHNPLGKVFT----REELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~~------~~~~i~l~~P~NPtG~~~~----~~~l~~l~   71 (72)
                      |+++|++++.+      ++++|+++..+|++|.+.+    .++|.++|
T Consensus       241 d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~  288 (472)
T 1ohv_A          241 CLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDIS  288 (472)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHH
Confidence            67888888865      7888888777888998665    55555554

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=95.80  E-value=0.0066  Score=41.16  Aligned_cols=38  Identities=16%  Similarity=0.189  Sum_probs=26.2

Q ss_pred             CHHHHHhhh-cCCccEEEEeCCCCccccCC----CHHHHHHHh
Q psy790           34 DPAELESKF-SSRTKLIILNTPHNPLGKVF----TREELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~-~~~~~~i~l~~P~NPtG~~~----~~~~l~~l~   71 (72)
                      |+++|++++ .+++++|+++..+|++|.+.    ..++|.++|
T Consensus       200 d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~  242 (433)
T 1z7d_A          200 DLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDIC  242 (433)
T ss_dssp             CHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHH
T ss_pred             CHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHH
Confidence            789999998 56777766554467789864    445555554

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=95.75  E-value=0.013  Score=41.07  Aligned_cols=60  Identities=23%  Similarity=0.172  Sum_probs=45.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC---CccEEEEeCC-CCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---RTKLIILNTP-HNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~l~~P-~NPtG~~~~~~~l~~l~~   72 (72)
                      ...|+++++++....+          +.+.+|+++|++++..   ..+++++.+| .+.+|.+-+.+++.++|+
T Consensus       162 ~l~Gl~p~~v~~~~~~----------~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~  225 (450)
T 3bc8_A          162 VTAGFEPVVIENVLEG----------DELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICA  225 (450)
T ss_dssp             HHTTCEEEEECCEEET----------TEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHH
T ss_pred             HHcCCeeEEEEeeecC----------ccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHH
Confidence            4679999999775422          1688999999999953   3457777777 455788999999999874

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=95.72  E-value=0.0024  Score=43.19  Aligned_cols=37  Identities=22%  Similarity=0.229  Sum_probs=24.9

Q ss_pred             CHHHHHhhhc---CCccEEEEeCC-CCccccCCC----HHHHHHHh
Q psy790           34 DPAELESKFS---SRTKLIILNTP-HNPLGKVFT----REELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~---~~~~~i~l~~P-~NPtG~~~~----~~~l~~l~   71 (72)
                      |+++|++++.   +++++|+ ++| +||||.+++    .++|.++|
T Consensus       187 d~~~le~~l~~~~~~~~~vi-~ep~~~~tG~~~~~~~~l~~l~~l~  231 (453)
T 2cy8_A          187 DIEGMREVFANHGSDIAAFI-AEPVGSHFGVTPVSDSFLREGAELA  231 (453)
T ss_dssp             CHHHHHHHHHHHGGGEEEEE-ECSSEHHHHTEECCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCEEEEE-ECCCCCCCCCcCCCHHHHHHHHHHH
Confidence            7899988886   3555554 555 577998775    55555554

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=95.66  E-value=0.0087  Score=40.07  Aligned_cols=38  Identities=21%  Similarity=0.287  Sum_probs=25.0

Q ss_pred             CHHHHHhhhcC--CccEEEEeCCCCc-cccCC-CHHHHHHHh
Q psy790           34 DPAELESKFSS--RTKLIILNTPHNP-LGKVF-TREELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~~--~~~~i~l~~P~NP-tG~~~-~~~~l~~l~   71 (72)
                      |+++|++.+..  ...++++++|+|+ ||.++ +.+.+++|.
T Consensus       185 d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~  226 (424)
T 2e7u_A          185 DPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALH  226 (424)
T ss_dssp             CHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHH
Confidence            78899888752  2334666678766 89876 455555543

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=95.60  E-value=0.02  Score=38.95  Aligned_cols=37  Identities=16%  Similarity=0.105  Sum_probs=23.8

Q ss_pred             HHHHHhhhc----CCccEEEEeCCCCccccCC-C---HHHHHHHh
Q psy790           35 PAELESKFS----SRTKLIILNTPHNPLGKVF-T---REELEVIA   71 (72)
Q Consensus        35 ~~~l~~~~~----~~~~~i~l~~P~NPtG~~~-~---~~~l~~l~   71 (72)
                      +++|++++.    +++++|+++.++|++|.+. +   .++|.++|
T Consensus       207 ~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~  251 (460)
T 3gju_A          207 ADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVL  251 (460)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHH
Confidence            578888775    4556666666677777744 4   45555554

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=95.55  E-value=0.0096  Score=40.47  Aligned_cols=38  Identities=13%  Similarity=0.177  Sum_probs=25.8

Q ss_pred             CHHHHHhhh-cCCccEEEEeCCCCccccCC----CHHHHHHHh
Q psy790           34 DPAELESKF-SSRTKLIILNTPHNPLGKVF----TREELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~-~~~~~~i~l~~P~NPtG~~~----~~~~l~~l~   71 (72)
                      |+++|++++ .+++++|+++..+|++|.+.    ..+++.++|
T Consensus       211 d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~  253 (439)
T 2oat_A          211 DLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELC  253 (439)
T ss_dssp             CHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHH
T ss_pred             CHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHH
Confidence            789999998 45666666554457789765    455555554

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=95.31  E-value=0.0096  Score=39.85  Aligned_cols=38  Identities=16%  Similarity=0.180  Sum_probs=23.3

Q ss_pred             CHHHHHhhhcC---CccEEEEeCC-CC-ccccCCC----HHHHHHHh
Q psy790           34 DPAELESKFSS---RTKLIILNTP-HN-PLGKVFT----REELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~~---~~~~i~l~~P-~N-PtG~~~~----~~~l~~l~   71 (72)
                      |+++|++++..   +..++++++| +| ++|....    .++|.++|
T Consensus       175 ~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~  221 (430)
T 3i4j_A          175 DAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDIC  221 (430)
T ss_dssp             HHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHH
Confidence            55788888752   3344455555 66 8888665    55555554

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=95.08  E-value=0.017  Score=38.71  Aligned_cols=38  Identities=18%  Similarity=0.258  Sum_probs=25.3

Q ss_pred             CHHHHHhhhc---CCccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790           34 DPAELESKFS---SRTKLIILNTPHNPLGKVFT----REELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~----~~~l~~l~   71 (72)
                      |++++++++.   +++++|+++.++|++|.+.+    .++|.++|
T Consensus       186 d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~  230 (429)
T 3k28_A          186 DLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVT  230 (429)
T ss_dssp             CHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHH
Confidence            7889988875   34555555554566677776    66676665

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=94.84  E-value=0.0035  Score=42.72  Aligned_cols=50  Identities=12%  Similarity=0.148  Sum_probs=36.8

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCH
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTR   64 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~   64 (72)
                      ++..|..++.++.+.             .+..+++.++.++++++++|.+++-.|.||.+.+.
T Consensus       122 a~~~G~~~~~~~~~~-------------~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi  171 (377)
T 3e77_A          122 AKKFGTINIVHPKLG-------------SYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF  171 (377)
T ss_dssp             HTTTSEEEECSCCCS-------------SSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS
T ss_pred             HHHhCCceEEeccCC-------------CcCCCCChHHhccCCCccEEEEeCccCchheEchh
Confidence            356677777777653             33345556667778899999999999999998874

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=94.21  E-value=0.019  Score=38.91  Aligned_cols=38  Identities=8%  Similarity=0.081  Sum_probs=25.4

Q ss_pred             CHHHHHhhhc---CCccEEEEeCCC-CccccCCC----HHHHHHHh
Q psy790           34 DPAELESKFS---SRTKLIILNTPH-NPLGKVFT----REELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~---~~~~~i~l~~P~-NPtG~~~~----~~~l~~l~   71 (72)
                      |+++|++++.   .++++|+++.++ |++|...+    .++|.++|
T Consensus       196 d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~  241 (448)
T 3dod_A          196 CLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELC  241 (448)
T ss_dssp             HHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHH
Confidence            4788888875   345566666556 88886665    55666655

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=94.07  E-value=0.019  Score=39.16  Aligned_cols=37  Identities=16%  Similarity=0.194  Sum_probs=24.4

Q ss_pred             HHHHHhhhcCCccEEEEeCCCCccccC--CCH---HHHHHHh
Q psy790           35 PAELESKFSSRTKLIILNTPHNPLGKV--FTR---EELEVIA   71 (72)
Q Consensus        35 ~~~l~~~~~~~~~~i~l~~P~NPtG~~--~~~---~~l~~l~   71 (72)
                      ++.|++.+.++..++++++|+|++|-.  .+.   ++|.++|
T Consensus       214 ~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~  255 (453)
T 4ffc_A          214 ISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWA  255 (453)
T ss_dssp             HHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHH
T ss_pred             HHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHH
Confidence            567777776667788888998888733  344   4444444

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=93.90  E-value=0.058  Score=36.07  Aligned_cols=38  Identities=16%  Similarity=0.128  Sum_probs=25.5

Q ss_pred             CHHHHHhhhcC--CccEEEEeCCCCccc-cCCC----HHHHHHHh
Q psy790           34 DPAELESKFSS--RTKLIILNTPHNPLG-KVFT----REELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~~--~~~~i~l~~P~NPtG-~~~~----~~~l~~l~   71 (72)
                      |+++|++++..  ...++++++|+|++| .+.+    .++|.++|
T Consensus       186 d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~  230 (429)
T 4e77_A          186 DLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALC  230 (429)
T ss_dssp             CHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHH
Confidence            78999988853  234556677876654 4445    57777776

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=93.79  E-value=0.058  Score=36.61  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=20.9

Q ss_pred             HHHHHhhhcC---CccEEEEeCC-CCccccCC-C---HHHHHHHh
Q psy790           35 PAELESKFSS---RTKLIILNTP-HNPLGKVF-T---REELEVIA   71 (72)
Q Consensus        35 ~~~l~~~~~~---~~~~i~l~~P-~NPtG~~~-~---~~~l~~l~   71 (72)
                      +++|++.+..   ...++++++| +|++|.+. +   .++|.++|
T Consensus       205 ~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~  249 (459)
T 4a6r_A          205 ARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERIC  249 (459)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHH
Confidence            7788887752   3334555555 45555555 4   45555554

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=93.73  E-value=0.0024  Score=43.52  Aligned_cols=51  Identities=10%  Similarity=-0.033  Sum_probs=38.3

Q ss_pred             ccCCCeEEEeeCC--CCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccC-CCHHH
Q psy790            3 EAAGGVPIYIPLQ--DTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKV-FTREE   66 (72)
Q Consensus         3 ~~~g~~~~~v~~~--~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~-~~~~~   66 (72)
                      +..| ++..++.+  ..            ++.++++++++++++++++|++++-.|.||.+ .+.++
T Consensus       135 ~~~G-~v~~v~~~~~~~------------G~~~~~~~~~~~l~~~t~lV~~~h~et~tG~~i~pi~~  188 (386)
T 3qm2_A          135 KKYC-APQIIDAKITVD------------GKRAVKPMREWQLSDNAAYLHYCPNETIDGIAIDETPD  188 (386)
T ss_dssp             TTTS-EEEEEECEEEET------------TEEEECCGGGCCCCTTCSCEEECSEETTTTEECCCCCC
T ss_pred             HHhC-CeEEEecCcccC------------CCCCCchHHHhhcCCCCcEEEEECCcCCcCEecCchhh
Confidence            4567 88888887  32            33356677888888899999999988999996 55543

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=93.52  E-value=0.054  Score=37.28  Aligned_cols=37  Identities=11%  Similarity=0.150  Sum_probs=25.3

Q ss_pred             HHHHHhhhc----CCccEEEEeCCCCcccc-CCCH---HHHHHHh
Q psy790           35 PAELESKFS----SRTKLIILNTPHNPLGK-VFTR---EELEVIA   71 (72)
Q Consensus        35 ~~~l~~~~~----~~~~~i~l~~P~NPtG~-~~~~---~~l~~l~   71 (72)
                      +++|++.+.    .++++|+++.++|++|. +++.   ++|.++|
T Consensus       207 ~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc  251 (476)
T 3i5t_A          207 VQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAIC  251 (476)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHH
Confidence            678888775    45677888777888886 5564   4455544

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=93.19  E-value=0.065  Score=36.90  Aligned_cols=37  Identities=22%  Similarity=0.284  Sum_probs=24.7

Q ss_pred             HHHHHhhhc----CCccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790           35 PAELESKFS----SRTKLIILNTPHNPLGKVFT----REELEVIA   71 (72)
Q Consensus        35 ~~~l~~~~~----~~~~~i~l~~P~NPtG~~~~----~~~l~~l~   71 (72)
                      +++|++.+.    .++++|+++.++|++|.+.+    .++|+++|
T Consensus       209 ~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~  253 (472)
T 3hmu_A          209 ARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRIC  253 (472)
T ss_dssp             HHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHH
Confidence            678888775    34566666666777787775    56666655

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=92.75  E-value=0.024  Score=38.24  Aligned_cols=47  Identities=15%  Similarity=0.223  Sum_probs=34.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFT   63 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~   63 (72)
                      +..|+++..++.+..+           .+.++++.  + +++++++|.+++-.|.||.+++
T Consensus       112 ~~~G~~v~~~~~~~~g-----------~~~~~~~~--~-l~~~t~lv~~~~~e~~tG~~~~  158 (361)
T 3m5u_A          112 QILGVNVKTVASSEES-----------NFDHIPRV--E-FSDNADYAYICSNNTIYGTQYQ  158 (361)
T ss_dssp             HHTTCCEEEEEECTTT-----------TSCSCCCC--C-CCTTSSEEEEESEETTTTEECS
T ss_pred             HHcCCceEEEecccCc-----------CCCcCChh--h-cCCCCCEEEEeCCCCCcceeCC
Confidence            4568899999987642           23233444  3 7788999999999999999865

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=92.75  E-value=0.082  Score=37.80  Aligned_cols=60  Identities=25%  Similarity=0.166  Sum_probs=42.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC---CccEEEEeC-CCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS---RTKLIILNT-PHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~l~~-P~NPtG~~~~~~~l~~l~~   72 (72)
                      ...|+++++++...++          +.+.+|++++++++..   +..++++.+ +.|-.+.+-+.+++.++|+
T Consensus       180 iL~Gl~Pv~V~p~~d~----------~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch  243 (501)
T 3hl2_A          180 ITAGFEPVVIENVLEG----------DELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICA  243 (501)
T ss_dssp             HHTTCEEEEECEEEET----------TEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHH
T ss_pred             HHcCCeEEEEeeeecc----------cccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHH
Confidence            4579999999874432          1688999999999853   334444444 4554567789999999873

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=90.96  E-value=0.033  Score=38.87  Aligned_cols=38  Identities=16%  Similarity=0.057  Sum_probs=26.9

Q ss_pred             CHHHHHhhhc---CCccEEEEeCCCCccccCCC----HHHHHHHh
Q psy790           34 DPAELESKFS---SRTKLIILNTPHNPLGKVFT----REELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~----~~~l~~l~   71 (72)
                      |+++|++++.   +++++|+++...|++|.+.+    .++|.++|
T Consensus       219 d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~  263 (465)
T 2yky_A          219 DVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEA  263 (465)
Confidence            6788888886   57888887655666998776    45555554

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=87.74  E-value=0.37  Score=32.64  Aligned_cols=29  Identities=10%  Similarity=0.023  Sum_probs=17.9

Q ss_pred             cCCccEEEEeCCCCccccC-C-C---HHHHHHHh
Q psy790           43 SSRTKLIILNTPHNPLGKV-F-T---REELEVIA   71 (72)
Q Consensus        43 ~~~~~~i~l~~P~NPtG~~-~-~---~~~l~~l~   71 (72)
                      .++..+++++.|.|++|-. . +   .++|.++|
T Consensus       224 ~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~  257 (451)
T 3oks_A          224 GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWC  257 (451)
T ss_dssp             CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHH
T ss_pred             CCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHH
Confidence            3455677778887777633 3 3   56666655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	72
d1gdea_	388	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	7e-13
d1b5pa_	382	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	1e-09
d2hoxa1	425	c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ	7e-09
d1j32a_	388	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho	6e-08
d1v2da_	368	c.67.1.1 (A:) Glutamine aminotransferase {Thermus	3e-05
d2ay1a_	394	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	7e-04

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 59.1 bits (142), Expect = 7e-13
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 11/72 (15%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
               AGG P+ +P  +             +F+L+  EL+   + +T+ +I+N+P NP G 
Sbjct: 126 AVILAGGKPVEVPTYE-----------EDEFRLNVDELKKYVTDKTRALIINSPCNPTGA 174

Query: 61  VFTREELEVIAK 72
           V T+++LE IA 
Sbjct: 175 VLTKKDLEEIAD 186

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

 Score = 49.8 bits (118), Expect = 1e-09
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 11/72 (15%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           M   AGGV + +         P           DP  +    + RTK +++N+P+NP G 
Sbjct: 131 MVRFAGGVVVEVETLPEEGFVP-----------DPERVRRAITPRTKALVVNSPNNPTGA 179

Query: 61  VFTREELEVIAK 72
           V+ +E LE +A+
Sbjct: 180 VYPKEVLEALAR 191

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

 Score = 47.8 bits (113), Expect = 7e-09
 Identities = 6/42 (14%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 30  DFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA 71
            +  + A   +  +    + ++ +P+NP G +  R  +    
Sbjct: 181 VWAGNAANYVNVSNPEQYIEMVTSPNNPEGLL--RHAVIKGC 220

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

 Score = 45.2 bits (106), Expect = 6e-08
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 9   PIYIPLQDTSPAEPGRHKSSAD--FKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREE 66
             Y  +   +   P    ++ +  FK+ P ++    + +TKL++ NTP NP G V+T +E
Sbjct: 125 VSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDE 184

Query: 67  LEVI 70
           +  I
Sbjct: 185 VRAI 188

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 37.8 bits (86), Expect = 3e-05
 Identities = 19/39 (48%), Positives = 25/39 (64%)

Query: 34  DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK 72
           D + LE   + RT+ ++LNTP NP G VF   ELE IA+
Sbjct: 141 DLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIAR 179

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

 Score = 33.8 bits (76), Expect = 7e-04
 Identities = 9/71 (12%), Positives = 16/71 (22%), Gaps = 8/71 (11%)

Query: 1   MSEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGK 60
           +    G         D                       +       +++    HNP G 
Sbjct: 133 IMNFMGLPVQTYRYFDAETRGVDFE--------GMKADLAAAKKGDMVLLHGCCHNPTGA 184

Query: 61  VFTREELEVIA 71
             T ++   IA
Sbjct: 185 NLTLDQWAEIA 195

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	72
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.47
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.45
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.39
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.38
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.3
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.28
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.17
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.16
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.15
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.13
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.12
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.11
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.11
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.11
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.08
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.07
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.06
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.05
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.04
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.0
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.0
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	98.98
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	98.92
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	98.9
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	98.87
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	98.77
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	98.67
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	98.54
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	98.52
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	98.45
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	98.36
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	98.32
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	98.25
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	98.24
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	98.2
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	98.07
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	97.98
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	97.96
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	97.93
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	97.88
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	97.72
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	97.71
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	97.7
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	97.69
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	97.66
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	97.61
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	97.61
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	97.49
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	97.46
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	97.24
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	96.58
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	96.52
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	95.96
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	95.5
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	94.49
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	94.18
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	92.78
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	92.54
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	92.52
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	90.82
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	89.65
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	88.19
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	86.72
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	86.14
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	85.69
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	84.24
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	82.55
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	81.93
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	81.1

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.47  E-value=1.5e-14  Score=95.42  Aligned_cols=59  Identities=37%  Similarity=0.701  Sum_probs=53.6

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++..|++++.+++..++           +|.+|+++|++.++++++++++||||||||.+++.+++++|+
T Consensus       127 ~~~~g~~~~~~~~~~~~-----------~~~~d~~~l~~~~~~~~~~i~~~~P~NPtG~~~s~~~~~~l~  185 (388)
T d1gdea_         127 VILAGGKPVEVPTYEED-----------EFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIA  185 (388)
T ss_dssp             HHHHTCEEEEEECCGGG-----------TTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHHcCCEEEEeeccccc-----------CCCCCHHHHHHhCccCCeEEEECCCcCCCCCcCCHHHHHHHH
Confidence            35678999999998765           899999999999999999999999999999999999999886

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.45  E-value=3.1e-14  Score=94.20  Aligned_cols=60  Identities=33%  Similarity=0.612  Sum_probs=54.0

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.+++.+++           +|.+|++++++++.++++++++||||||||.+++.+++.+|++
T Consensus       132 ~~~~g~~~~~v~~~~~~-----------~~~~d~~~l~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~  191 (382)
T d1b5pa_         132 VRFAGGVVVEVETLPEE-----------GFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALAR  191 (382)
T ss_dssp             HHHTTCEEEEEECCGGG-----------TTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             HHHhcCeEEEEeccccc-----------ccCCCHHHHHHhCCCCCeEEEECCCCCCcchhCCHHHHHHHHH
Confidence            35689999999998764           7899999999999999999999999999999999999998863

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.39  E-value=1.3e-13  Score=91.63  Aligned_cols=58  Identities=36%  Similarity=0.740  Sum_probs=52.8

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.+++..++           +|.+|+++|++++++++++++++|||||||.+++.+++.+|+
T Consensus       132 ~~~~~~~v~~~~~~~~-----------~~~~d~~~l~~~~~~~~~~~~~~~P~NPTG~~~~~~~~~~l~  189 (388)
T d1j32a_         132 KLAEGTPVILPTTVET-----------QFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIA  189 (388)
T ss_dssp             HHTTCEEEEECCCGGG-----------TTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHhcCeEEEEeccccc-----------ccCCCHHHHHHhCCCCCeEEEECCCCCCCCcccchhhhhhhh
Confidence            4578899999988765           799999999999999999999999999999999999999886

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.38  E-value=1.6e-13  Score=91.44  Aligned_cols=60  Identities=28%  Similarity=0.510  Sum_probs=54.0

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.+++..++           +|.+|++++++.+.++++++++||||||||.+++.+++.+|++
T Consensus       134 ~~~~g~~~v~v~~~~~~-----------~~~~d~~~~~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~  193 (395)
T d1xi9a_         134 VKFYGGKPVEYRTIEEE-----------DWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILN  193 (395)
T ss_dssp             HHHTTCEEEEEEEEGGG-----------TSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             hhhcCCEEEEEeccccc-----------cccchHHHHHHhhcccccEEEecCCCCCccchhhHHHHHHHHh
Confidence            35679999999987765           8999999999999999999999999999999999999998863

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.30  E-value=9.4e-13  Score=87.56  Aligned_cols=60  Identities=28%  Similarity=0.444  Sum_probs=54.6

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.++++.++           +|.++++.+++...+++++++++|||||||.+++.+++++|++
T Consensus       142 ~~~~G~~~~~v~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~l~np~NPtG~~~~~~~~~~i~~  201 (412)
T d1bw0a_         142 CKAYGIGMHFYNCRPEN-----------DWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVR  201 (412)
T ss_dssp             HHHTTCEEEEEEEEGGG-----------TTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             hhccCcccccccccccc-----------ccchhhHHHHhhhhccccccccccccccccccchhhhcccccc
Confidence            45689999999998765           8999999999999999999999999999999999999999873

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.28  E-value=1.4e-12  Score=86.67  Aligned_cols=60  Identities=18%  Similarity=0.178  Sum_probs=51.8

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh---cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF---SSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~---~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.+|+..++           .|.++++.+.+.+   .++++++++|+||||||.+++.+++++|++
T Consensus       140 ~~~~g~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~  202 (401)
T d7aata_         140 FRDAGLQLQAYRYYDPK-----------TCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELAS  202 (401)
T ss_dssp             HHHTTCEEEEEECEETT-----------TTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHH
T ss_pred             HHHcCCeEEEEeccccc-----------cccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHH
Confidence            45789999999998765           8889998887776   357899999999999999999999999863

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.17  E-value=1.1e-11  Score=81.04  Aligned_cols=59  Identities=42%  Similarity=0.613  Sum_probs=50.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|.+++.++++...          +.|.+|++.+++++.+++++++++|||||||.+++.+++++|+
T Consensus       120 ~~~g~~~~~~~~~~~~----------~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~l~  178 (368)
T d1v2da_         120 FLAGAKARLVRLDLTP----------EGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIA  178 (368)
T ss_dssp             HHTTCEEEEEECEEET----------TEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HhcCCccceecccccc----------ccccCCHHHHHHhhccCceEEEEcCCCCcccccCCHHHHHHHH
Confidence            4567888888876432          2788999999999999999999999999999999999988876

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.16  E-value=1.1e-11  Score=82.08  Aligned_cols=60  Identities=25%  Similarity=0.453  Sum_probs=48.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh-cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF-SSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ...|++.+.++....+          ..|.+|.+.++.+. .+++|++++||||||||.+++.+++++|++
T Consensus       131 ~~~g~~~v~~~~~~~~----------~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~  191 (394)
T d1c7na_         131 KNQERKIIECELLEKD----------GYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKD  191 (394)
T ss_dssp             HTTTCEEEECCCEEET----------TEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHH
T ss_pred             hhhhhccccccccccc----------ccccchhhhhhhhhccccceEEEecccccccceeccHHHhhhhhc
Confidence            4567888888775432          26888999888876 457999999999999999999999998863

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.15  E-value=5.1e-11  Score=79.78  Aligned_cols=57  Identities=25%  Similarity=0.497  Sum_probs=48.1

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh------cCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF------SSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~------~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ..|++++.++++..+           +|.+|+++++.++      ..++++++++|||||||.+++.+++++|+
T Consensus       152 ~~g~~~v~v~~~~~~-----------~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~  214 (428)
T d1iaya_         152 RTGVQLIPIHCESSN-----------NFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVL  214 (428)
T ss_dssp             TTCCEEEEECCCTTT-----------TTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             hcCCeEEEeeccccc-----------ccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhh
Confidence            458999999998765           8999998876543      45788999999999999999999988876

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=1.8e-11  Score=81.09  Aligned_cols=60  Identities=18%  Similarity=0.254  Sum_probs=50.5

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh---cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF---SSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~---~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.+|+..++           .|..+.+.+.+..   .+++++++++|||||||.+++.+++++|++
T Consensus       138 ~~~~G~~~~~v~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~  200 (397)
T d3tata_         138 FAGAGFEVSTYPWYDEA-----------TNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIE  200 (397)
T ss_dssp             HHTTTCCCEECCCCCTT-----------TSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHH
T ss_pred             HHHcCCEEEEEecchhh-----------ccccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHH
Confidence            45789999999998765           7788888777665   356889999999999999999999998863

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=5e-11  Score=78.61  Aligned_cols=57  Identities=35%  Similarity=0.627  Sum_probs=50.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ...|+..+.+++...            .|.+|++++++...+++++++++|||||||.+++.+++++|+
T Consensus       129 ~~~g~~~~~~~~~~~------------~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~v~~~~~~~~l~  185 (382)
T d1u08a_         129 ALSGGIVKRMALQPP------------HFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALW  185 (382)
T ss_dssp             HHTTCEEEEEECCTT------------TCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             hhccccceecccccc------------cccCCHHHHhhhhccCccEEEECCCCcccccccccccchhhh
Confidence            456788888887653            678899999999999999999999999999999999999875

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.11  E-value=4.7e-11  Score=80.02  Aligned_cols=57  Identities=28%  Similarity=0.497  Sum_probs=49.0

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc------CCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS------SRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~------~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ..|++++.++++.++           +|.+|.+.+++.+.      .++++++++|||||||.+++.+++++|+
T Consensus       153 ~~g~~~v~v~~~~~~-----------~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~  215 (431)
T d1m7ya_         153 RTGVEIVPIHCTSSN-----------GFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLL  215 (431)
T ss_dssp             TTCCEEEEEECCGGG-----------TSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             hcCceeccccccchh-----------cccccHHHhhhhhhhhhhccCcceEEEecCcccccccccccccccccc
Confidence            458999999998765           79999998887663      3688999999999999999999999886

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.11  E-value=4.3e-11  Score=78.36  Aligned_cols=59  Identities=31%  Similarity=0.488  Sum_probs=51.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ...+...+.+++..++           .|.++.+.++....+++++++++|||||||.+++.+++++|++
T Consensus       130 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~nP~NPTG~~~s~~~~~~i~~  188 (375)
T d1o4sa_         130 ILAGGTVNVVETFMSK-----------NFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVR  188 (375)
T ss_dssp             HHTTCEEEEEECCGGG-----------TTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             hccccccccccccccc-----------cccchhHHHHHhhccCccEEEEeCCCCCccCCCCHHHHHHHHH
Confidence            3467788888887765           7889999999988889999999999999999999999998863

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=2.2e-11  Score=79.42  Aligned_cols=59  Identities=31%  Similarity=0.537  Sum_probs=49.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh-cCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF-SSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|.+++.++....+          ++|.+|++.+++.+ .+++|+|+++|||||||.+++.+++.+|+
T Consensus       100 ~~~g~~~~~v~~~~~~----------~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~  159 (361)
T d1d2fa_         100 EGNQRTVMPVALEKQA----------DGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMA  159 (361)
T ss_dssp             HHTTCEEEEEECEECS----------SSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHH
T ss_pred             HhhcceEEeecccccc----------cccccccccchhhcccCCceeEEecccccccccccchhhhhhhh
Confidence            4678888888876543          27889999999888 45899999999999999999998888776

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.08  E-value=4.6e-11  Score=77.83  Aligned_cols=58  Identities=22%  Similarity=0.338  Sum_probs=48.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ...+++++.+++..++           .|.++ +++.++..+++|+|+++|||||||.+++.+++.+|++
T Consensus       114 ~~~~~~~~~v~~~~~~-----------~~~~~-~~~~~~~~~~~~~v~l~nP~NPtG~~~~~e~l~~i~~  171 (355)
T d1lc5a_         114 AQSGCEIRRWSLREAD-----------GWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIAD  171 (355)
T ss_dssp             HHTTCEEEEEECCGGG-----------TTCCC-TTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             ccccccceeeeeeccC-----------Cccce-eeeeeccccccceeeeecccCcccccchhhhhhhhhh
Confidence            3467889999988754           67666 4566777889999999999999999999999998863

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=7e-11  Score=78.13  Aligned_cols=60  Identities=22%  Similarity=0.201  Sum_probs=48.8

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh---cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF---SSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~---~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.+++..++           ++..+...+.+..   ..+++++++++||||||.+++.+++++|++
T Consensus       137 ~~~~g~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~  199 (396)
T d2q7wa1         137 FNSAGLEVREYAYYDAE-----------NHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQ  199 (396)
T ss_dssp             HHHTTCEEEEEECEETT-----------TTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred             HHHcCCeeEeccccccc-----------ccccccchHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHH
Confidence            35689999999998765           6777776665543   457889999999999999999999998863

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.06  E-value=9.1e-11  Score=78.30  Aligned_cols=60  Identities=20%  Similarity=0.186  Sum_probs=50.2

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc---CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS---SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.+++..++           .+.++.+.+.+.+.   ++++++++++||||||.+++.+++++|++
T Consensus       141 ~~~~g~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~  203 (412)
T d1yaaa_         141 FENQGLKTATYPYWANE-----------TKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVD  203 (412)
T ss_dssp             HHTTTCCEEEEECEETT-----------TTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred             HHHcCCceecccccccc-----------cccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHh
Confidence            35689999999987765           78889888877663   45678999999999999999999998863

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.05  E-value=5e-11  Score=79.30  Aligned_cols=61  Identities=23%  Similarity=0.139  Sum_probs=46.2

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh---cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF---SSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~---~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.++...+.          +.+.+|++.+++..   .++++++++|+||||||.+++.+++++|++
T Consensus       147 ~~~~G~~~v~~~~~~~~----------~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~  210 (412)
T d1ajsa_         147 FTTAGFKDIRSYRYWDT----------EKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIAS  210 (412)
T ss_dssp             HHHTTCSCEEEEECEET----------TTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHH
T ss_pred             HHHcCCeEEEeeccccc----------ccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHH
Confidence            35678876665543221          16788988776654   567899999999999999999999999863

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.04  E-value=1.3e-10  Score=77.34  Aligned_cols=66  Identities=58%  Similarity=0.923  Sum_probs=52.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++++.++..   -......|.++.+++.+....+++++++||||||||.+++.+++.+|+
T Consensus       132 ~~~g~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~  197 (418)
T d2r5ea1         132 KAAGGIPRFIPLKPNKTG---GTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVA  197 (418)
T ss_dssp             HHTTCEEEEEECEESCCS---SCEEGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HHcCCeEEEEEecccccc---cchhhhhhhhhHHHHhhhhhccccceecCCcCccccccccHHHHHHHh
Confidence            457889999998764311   011112578899999998888999999999999999999999999886

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=2.3e-10  Score=74.63  Aligned_cols=55  Identities=22%  Similarity=0.471  Sum_probs=47.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.+++.+             +|.+|+++++.++. ++++|++||||||||.+++.+++..++
T Consensus       116 ~~~g~~v~~~~~~~-------------~~~~d~~~l~~~~~-~~~~v~~~~pnNPtG~~~~~~~~~~~~  170 (354)
T d1fg7a_         116 ETIGVECRTVPTLD-------------NWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLL  170 (354)
T ss_dssp             HHHTCEEEECCCCT-------------TSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             hccCceeecccccc-------------ccccchhhhhhccc-ccceeeccCCCccceeEeeeccccccc
Confidence            45688888888764             79999999988774 799999999999999999999887764

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.00  E-value=1.3e-10  Score=76.60  Aligned_cols=60  Identities=17%  Similarity=0.161  Sum_probs=47.3

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh---cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF---SSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~---~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.+++..++           .+..+.+.+++..   .++++++++++||||||.+++.+++++|++
T Consensus       134 ~~~~g~~~v~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~  196 (394)
T d2ay1a_         134 MNFMGLPVQTYRYFDAE-----------TRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIAS  196 (394)
T ss_dssp             HHHHTCCEEEEECEETT-----------TTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHH
T ss_pred             HHHcCCEEEEecccchh-----------cccccchhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence            35678999999987654           6667766665544   456788999999999999999999998863

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=2.6e-10  Score=74.89  Aligned_cols=57  Identities=23%  Similarity=0.264  Sum_probs=50.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++.+.             .+.+|+++++++++++||+|++++|+||||.+++.++|.++++
T Consensus       114 ~~~G~~v~~v~~~~-------------~~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~~~~~I~~~~~  170 (391)
T d1p3wa_         114 EREGFEVTYLAPQR-------------NGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCR  170 (391)
T ss_dssp             HHTTCEEEEECCCT-------------TSCCCHHHHHHHCCTTEEEEECCSBCTTTCCBCCHHHHHHHHH
T ss_pred             HHcCCEEEEeCCCC-------------CCeEcHHHHHHhCCCCcEEEEEECCCCCCeeECCHHHHHHHhc
Confidence            34689999999875             5568999999999999999999999999999999999998873

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=4.6e-10  Score=74.74  Aligned_cols=69  Identities=52%  Similarity=0.893  Sum_probs=51.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ...|++++.++..+... +.+......+|.+|.+++.....++++++++++||||||.+++.+++++|++
T Consensus       130 ~~~g~~~v~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~  198 (418)
T d1w7la_         130 MMAGGRPVFVSLKPGPI-QNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVAS  198 (418)
T ss_dssp             HHTTCEEEEEECEECC----CCSEEGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             HHcCCEeeccccccccc-cccccccccCcccchhhhhccccccccceeccCcCCcccccccHHHHHHHHH
Confidence            45688888888764210 0011111136889998888888889999999999999999999999998863

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=98.90  E-value=2e-10  Score=75.37  Aligned_cols=58  Identities=31%  Similarity=0.409  Sum_probs=45.8

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|+.++.++....            .+..+.+.+.....+++++++++|||||||.+++.+++++|++
T Consensus       129 ~~~g~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~  186 (389)
T d2gb3a1         129 KIAGVKLIPVTRRME------------EGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVE  186 (389)
T ss_dssp             HHHTCEEEEEECCGG------------GTSCCCTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             cccCccccccccccc------------cccchhhhhhhhcccCccEEEeCCCCccccccchHHHHHHHHh
Confidence            456788888888764            3334445566777788999999999999999999999998863

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.87  E-value=1.2e-09  Score=70.26  Aligned_cols=59  Identities=17%  Similarity=0.350  Sum_probs=50.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCC-----ccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSR-----TKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~-----~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.+|.+..+           +|.+|+++++++++++     +++|++++|+||||.+.+.++|.++|+
T Consensus       104 ~~~g~~v~~v~~~~~~-----------~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~  167 (364)
T d2e7ja1         104 ERAGLNIALVPKTDYP-----------DYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCS  167 (364)
T ss_dssp             HHTTCEEEEECCCCTT-----------TCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             HhccceEEEeeecccc-----------ccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccc
Confidence            5679999999987654           7889999999988543     458999999999999999999999873

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=98.77  E-value=3.2e-09  Score=68.79  Aligned_cols=52  Identities=29%  Similarity=0.532  Sum_probs=40.9

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++.+|++++.+|++.+.             ..+     +...++++++++||||||||.+++.+++.+++
T Consensus       113 ~~~~g~~~v~v~~~~~~-------------~~~-----~~~~~~~~~l~l~nP~NPtG~~~s~~~l~~~~  164 (334)
T d2f8ja1         113 AKAVGAKFLEVPLTKDL-------------RIP-----EVNVGEGDVVFIPNPNNPTGHVFEREEIERIL  164 (334)
T ss_dssp             HHHHTCCEEECCCCTTS-------------CCC-----CCCCCTTEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             hhccCCccccccccccc-------------ccc-----ccccccceEEEecccccccceeecHHHhhccc
Confidence            35679999999998642             121     23446789999999999999999999998875

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.67  E-value=1.8e-08  Score=65.47  Aligned_cols=56  Identities=21%  Similarity=0.280  Sum_probs=51.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.+|++.             ++.+|+++++++++++|++|++++++|+||...+.+++.+++
T Consensus       110 ~~~g~~v~~vp~~~-------------~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~i~~~~  165 (376)
T d1eg5a_         110 SMKGFKVKYVPVDS-------------RGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIV  165 (376)
T ss_dssp             HHTTCEEEECCBCT-------------TSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHH
T ss_pred             HhcCCEEEEEcCCC-------------CCeECHHHHHHhcCCCceEEEEECCccccceeeeehhhhhhh
Confidence            45699999999886             567999999999999999999999999999999999998875

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=98.54  E-value=1.6e-08  Score=65.77  Aligned_cols=58  Identities=21%  Similarity=0.263  Sum_probs=47.4

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.+|.+...           ......+.++++++++++++++++++||||.+++.++|.++|
T Consensus       114 ~~~g~~~~~v~~~~~~-----------~~~~~~~~l~~~i~~~t~~v~i~~~~n~tG~~~~~~~I~~l~  171 (381)
T d1elua_         114 ARFGITYRFFPVAATL-----------NQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVC  171 (381)
T ss_dssp             HHHCCEEEEECCGGGS-----------SSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHH
T ss_pred             cccccccccccccccc-----------ccchHHHHHHhhhcccccccccccccccccccchhhHHHHHH
Confidence            3468999999876532           223346778888899999999999999999999999999887

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=98.52  E-value=4.2e-08  Score=64.81  Aligned_cols=57  Identities=21%  Similarity=0.287  Sum_probs=41.5

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh---------cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF---------SSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~---------~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++..|++++.+++++.              .++++.+....         ...++++++++||||||.+++.++++++++
T Consensus       145 ~~~~g~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~  210 (420)
T d1vp4a_         145 FRQYLANFVVVPLEDD--------------GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVE  210 (420)
T ss_dssp             HHTTTCEEEEEEEETT--------------EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred             HHHHhhhccccccccc--------------ccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhh
Confidence            3567899999998753              35666554332         122446778899999999999999988863

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=98.45  E-value=2.3e-07  Score=62.58  Aligned_cols=53  Identities=21%  Similarity=0.256  Sum_probs=47.2

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ++.+|+++.+++..                  |+++++++++++||+|++.+|.||+..+.+.+.+.++++
T Consensus       119 ~~~~Gi~~~~~d~~------------------d~~~~~~ai~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~  171 (392)
T d1gc0a_         119 IGEFGVKLRHVDMA------------------DLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIAR  171 (392)
T ss_dssp             GGGGTCEEEEECTT------------------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHG
T ss_pred             hccCCcccccCCcc------------------CHHHHHHhCCCCCeEEEecccccceeeecchHHHHHHHH
Confidence            45678888888754                  679999999999999999999999999999999999874

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=98.36  E-value=1.1e-07  Score=62.28  Aligned_cols=58  Identities=19%  Similarity=0.099  Sum_probs=40.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHH----HHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAE----LESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~----l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +.+|++++.++.+..+           .+......    ..+..++...++++++||||||.+++.+++++|+
T Consensus       136 ~~~g~~~~~v~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~  197 (403)
T d1wsta1         136 KYYDPEFISIPLDDKG-----------MRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLL  197 (403)
T ss_dssp             HTTCCEEEEEEEETTE-----------ECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHH
T ss_pred             hhccccceeEeecccC-----------CccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHH
Confidence            5678999999987643           22112211    1222234556788999999999999999999886

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=98.32  E-value=3.5e-08  Score=66.81  Aligned_cols=33  Identities=15%  Similarity=0.231  Sum_probs=29.9

Q ss_pred             CceeCHHHHHhhhcCCccEEEEeCCCCccccCC
Q psy790           30 DFKLDPAELESKFSSRTKLIILNTPHNPLGKVF   62 (72)
Q Consensus        30 ~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~   62 (72)
                      .|.+|.+.++++++++++++++||||||||.+.
T Consensus       181 ~~~~D~~~~~~~~~~~~~ii~l~sPnNPtG~l~  213 (425)
T d2hoxa1         181 VWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLR  213 (425)
T ss_dssp             EEEEEGGGGTTCSCGGGEEEEEESSCTTTCCCC
T ss_pred             ccCCCHHHHHhhCCCCceEEEEECCCCCCcchh
Confidence            688899999888888999999999999999874

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=98.25  E-value=8e-07  Score=59.95  Aligned_cols=52  Identities=23%  Similarity=0.340  Sum_probs=46.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..+|+++.+++..                  |.+.++++++++||+|++.+|.||+..+.+.+.+.++++
T Consensus       124 ~~~Gi~~~~vd~~------------------d~~~~~~~i~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~  175 (397)
T d1y4ia1         124 PKFGINVRFVDAG------------------KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAH  175 (397)
T ss_dssp             HHTTCEEEEECTT------------------SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             CCCceEeeccCCC------------------CHHHHHHhcCCCCcEEEecCCcccceeecccHHHHHHhh
Confidence            4578888888754                  579999999999999999999999999999999999873

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=3.5e-07  Score=60.43  Aligned_cols=57  Identities=26%  Similarity=0.336  Sum_probs=50.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.+|++.             +..+|++.++++++++|+++++++.+|.||.++|.+++.++++
T Consensus       134 ~~~g~~v~~~~~~~-------------~g~~~~~~~~~~i~~~t~lv~~~~v~~~tG~~~pi~~i~~~~~  190 (405)
T d1jf9a_         134 ARVGAELRVIPLNP-------------DGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAH  190 (405)
T ss_dssp             HHHTCEEEEECBCT-------------TSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred             HHcCcEEEEECCCC-------------CCcCCHHHHHHhccCCcEEEEEecCCCcccccCchHHhhhHHH
Confidence            45689999999986             4457889999999999999999999999999999999998873

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.20  E-value=1.5e-06  Score=58.17  Aligned_cols=52  Identities=21%  Similarity=0.320  Sum_probs=45.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..+|+++.+++..                  +.+.+++++.++||+|++.+|.||+..+.|.+.+.++++
T Consensus       109 ~~~gi~~~~~d~~------------------~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~  160 (380)
T d1ibja_         109 PRSGVVVKRVNTT------------------KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAH  160 (380)
T ss_dssp             GGGTCEEEEECTT------------------SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred             ccccccccccCcc------------------hHHHHHHHhccCccEEEeccccccccccccHHHHHHHHH
Confidence            4567887777654                  578899999999999999999999999999999999874

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.07  E-value=2.4e-06  Score=54.99  Aligned_cols=55  Identities=16%  Similarity=0.306  Sum_probs=48.5

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ...|+++++++++++            ++.+|++.|+++++++||+|++   .|..|...+.++|.++++
T Consensus        89 ~~~g~~pv~~d~~~~------------~~~~d~~~l~~~i~~~tkaIi~---~h~~G~~~~~~~i~~i~~  143 (376)
T d1mdoa_          89 VLLGANPVMVDVDRD------------TLMVTPEHIEAAITPQTKAIIP---VHYAGAPADLDAIYALGE  143 (376)
T ss_dssp             HHTTCEEEEECBCTT------------TCCBCHHHHHHHCCTTEEEECC---BCGGGCCCCHHHHHHHHH
T ss_pred             hccccceeeeccccc------------ccCCCHHHHHHhcCCCCeEEEE---eCCCCCccchhHHHHHHH
Confidence            467999999999875            7889999999999999999994   568999999999998873

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=7.2e-06  Score=54.91  Aligned_cols=39  Identities=26%  Similarity=0.527  Sum_probs=36.1

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |.+.++.++.++||+||+.+|.||+..+.|.+.+.++++
T Consensus       124 d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~ia~  162 (384)
T d1cs1a_         124 DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAR  162 (384)
T ss_dssp             CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHH
T ss_pred             CHHHHHhhccccccEEEEeccccccceeccHHHHhhhhh
Confidence            578899999999999999999999999999999998873

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=2.7e-06  Score=56.10  Aligned_cols=61  Identities=21%  Similarity=0.123  Sum_probs=49.8

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc----CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS----SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..+|++++.|+....+          +.+.+|+++|++++.    +++.+|++++|+|++|.+.+.++|.++|+
T Consensus       157 ~~~~g~~~~~v~~~~~~----------~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~  221 (445)
T d3bc8a1         157 MVTAGFEPVVIENVLEG----------DELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICA  221 (445)
T ss_dssp             HHHTTCEEEEECCEEET----------TEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHH
T ss_pred             HHHcCCeeEEEEeeccC----------cccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHH
Confidence            35679999988754322          278999999998884    36789999999999999999999999873

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=97.93  E-value=7.9e-06  Score=55.32  Aligned_cols=53  Identities=17%  Similarity=0.175  Sum_probs=43.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..+|+++.+++...                 ..+..++.++++||+|++.+|.||+..+.|.+.+.++++
T Consensus       119 ~~~gi~~~~~d~~~-----------------~~~~~~~~~~~~t~li~~EtpsNP~l~v~Di~~i~~iA~  171 (421)
T d2ctza1         119 KRLGIEVRFTSREE-----------------RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAR  171 (421)
T ss_dssp             HHTTCEEEECCTTC-----------------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             hhccccceeccccc-----------------CcchhccccCCCceEEEEcCCCcceeEecchHHHHHHHH
Confidence            45778888776542                 345667778889999999999999999999999999874

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=5.4e-06  Score=55.98  Aligned_cols=58  Identities=12%  Similarity=0.019  Sum_probs=52.3

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ++.+|++++.|+.++.            ++.+|+++|++++.++|.+|+.+.+++.||.+-+.+++..++
T Consensus       168 a~~~gi~~~~v~~~~~------------~~~~d~~~L~~~i~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~  225 (450)
T d1pmma_         168 ARYWDVELREIPMRPG------------QLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDAL  225 (450)
T ss_dssp             HHHTTCEEEECCCBTT------------BCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHH
T ss_pred             HHHcCCCceEeeecCC------------CCcCcHHHHHHHhhhCceEEEeeeeeccCCCccccchhhHHH
Confidence            4678999999998763            688999999999999999999999999999999999888775

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=2e-05  Score=52.76  Aligned_cols=51  Identities=14%  Similarity=0.171  Sum_probs=43.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ...|+++.+++..                  |.+.+++++.+++|+|++.+|.||+..+.+.+.+.+++
T Consensus       119 ~~~Gi~~~~~d~~------------------d~~~~~~~i~~~t~~i~~EtpsNP~l~v~Di~~i~~~a  169 (391)
T d1cl1a_         119 SKLGVTTSWFDPL------------------IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAV  169 (391)
T ss_dssp             GGGTCEEEEECTT------------------CGGGGGGTCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             cccccccccccCc------------------cccccccccccccceeeecccCcccccccccHHHHHHH
Confidence            4567888877754                  45678888999999999999999999999999998876

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=97.71  E-value=2.5e-05  Score=52.32  Aligned_cols=51  Identities=25%  Similarity=0.309  Sum_probs=42.7

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ..+|+.+.+++..                  |.+.+++++++++|+|++.+|.||+..+.+.+.+.+++
T Consensus       120 ~~~gi~~~~~d~~------------------d~~~~~~~i~~~t~lv~~Etp~NP~l~v~Di~~~~~~~  170 (394)
T d1e5ea_         120 TKFGIQVDFINTA------------------IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDA  170 (394)
T ss_dssp             HHTTCEEEEECTT------------------STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             hccceeeeccCCC------------------CHHHHHHhhcccccEEEEeccCCcceeeehhhhhhhcc
Confidence            4578888888765                  35678899999999999999999999999999876643

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=97.70  E-value=2.8e-05  Score=50.87  Aligned_cols=51  Identities=25%  Similarity=0.367  Sum_probs=43.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +.+|+++.+++..                  |.+.+++++++++++|++.+|.||+..+.+.+.+.+++
T Consensus        59 ~~~gi~~~~~d~~------------------d~~~~~~~i~~~t~~i~~Es~~np~~~v~d~~~~~~~~  109 (331)
T d1pffa_          59 RKFGVEVDFIDMA------------------VPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQA  109 (331)
T ss_dssp             HHTTCEEEEECTT------------------STTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             HhcCeEEEEeccc------------------chhhHhhhcccccceeeeecccccccccccchhhhhhh
Confidence            4578888888765                  46778999999999999999999999999999888764

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=97.69  E-value=2.6e-05  Score=51.27  Aligned_cols=56  Identities=27%  Similarity=0.402  Sum_probs=49.0

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|++++.++...             ....+.+.++++++++|++|++++-+|-||..++.+++.+++
T Consensus       134 ~~~g~~v~~~~~~~-------------~~~~~~~~l~~~~~~~t~lv~i~~~~~~tG~~~p~~~i~~~~  189 (408)
T d1t3ia_         134 AKTGAVLKFVQLDE-------------QESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLA  189 (408)
T ss_dssp             HHHCCEEEEECBCT-------------TSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHH
T ss_pred             hccCceEeeeeccc-------------cccccHHHhhhccCCCceEEEEecccccccccCcHHHHhhhh
Confidence            34588999998876             445689999999999999999999999999999999998876

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.66  E-value=2.9e-05  Score=52.03  Aligned_cols=38  Identities=26%  Similarity=0.311  Sum_probs=34.4

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +.+++++++++++|+|++.+|.||+..+.+.+.+.+++
T Consensus       127 ~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~~ia~~a  164 (393)
T d1n8pa_         127 LLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLI  164 (393)
T ss_dssp             HHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred             chHHHHHHhhhhcceeEecCcchhhhhccchhhhhhhh
Confidence            35678999999999999999999999999999998875

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.61  E-value=5.4e-05  Score=50.80  Aligned_cols=53  Identities=15%  Similarity=0.136  Sum_probs=40.5

Q ss_pred             cccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHH-HHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            2 SEAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPA-ELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         2 ~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~-~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      .+.+|+++.+++..                  +.+ ..++...+++++|++.+|.||+..+.|.+.+.++++
T Consensus       127 ~~~~gi~~~~~~~~------------------~~~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~  180 (398)
T d1qgna_         127 LPKMGITATVIDPA------------------DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCH  180 (398)
T ss_dssp             GGGGTCEEEEECSS------------------CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             cccccccccccccc------------------chhhhhhhhccccceEEEccCccccccccchHHHHHHHHh
Confidence            34567777777643                  233 334455789999999999999999999999999873

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=97.61  E-value=2.6e-05  Score=51.22  Aligned_cols=60  Identities=8%  Similarity=0.010  Sum_probs=48.8

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcC-----CccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSS-----RTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-----~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..|++++.++....+          +.+.+|+++|++++.+     ++.+|++++|++++|.+.+.++|.++|+
T Consensus       174 ~~~g~~~~~v~~~~~~----------~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~  238 (434)
T d2z67a1         174 SFVGMNMRLVETVLDG----------DRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICE  238 (434)
T ss_dssp             HHTTCEEEEECCEEET----------TEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHH
T ss_pred             HHhCCcceEEEeecCC----------CccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHH
Confidence            4578888888754322          2788999999999853     5778999999999999999999999873

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=97.49  E-value=5.4e-05  Score=49.53  Aligned_cols=55  Identities=24%  Similarity=0.463  Sum_probs=48.9

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ...|++++++++++.            ++.+|++.+++.+.+++++|+   +.+..|...+.+++.++|+
T Consensus        92 ~~~g~~p~~~d~~~~------------~~~~d~~~~~~~i~~~tk~i~---~~~~~g~~~d~~~i~~~~~  146 (384)
T d1b9ha_          92 QRLGAVTVPVDVDAA------------TYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISA  146 (384)
T ss_dssp             HHTTCEEEEECBCTT------------TCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHH
T ss_pred             ccccccccccccccc------------ccccchhhhcccccccccccc---cccccccccccccchhhhh
Confidence            457999999999874            788999999999999999998   8899999999999998863

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.46  E-value=4.7e-05  Score=49.47  Aligned_cols=35  Identities=17%  Similarity=0.193  Sum_probs=27.7

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHH
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVI   70 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l   70 (72)
                      |+++++++++++||+|++++|+||++  ++.+++++|
T Consensus       122 d~e~l~~~i~~~tk~i~~~~p~n~~~--~~~~~l~~i  156 (366)
T d2aeua1         122 KVGEILNKIDKDTLVIITGSTMDLKV--IELENFKKV  156 (366)
T ss_dssp             CHHHHHTTCCTTEEEEEECBCTTSCB--CCHHHHHHH
T ss_pred             CHHHHHHhcCCCceEEEEEecCCCCc--CCHHHHHHH
Confidence            68999999999999999999999853  444444444

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=97.24  E-value=7e-05  Score=48.24  Aligned_cols=41  Identities=17%  Similarity=0.286  Sum_probs=36.7

Q ss_pred             eeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           32 KLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        32 ~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..+.+.++++++++|++|++++.+|.||.+++.++|.++++
T Consensus       151 ~~~~~~~~~~i~~~T~lV~i~~v~~~tG~~~pv~~i~~~~~  191 (404)
T d1qz9a_         151 VDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSH  191 (404)
T ss_dssp             ESSGGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHH
T ss_pred             cccchhHHHhcCCCceEEEEecccccccceecHHHHhcccc
Confidence            34667888999999999999999999999999999998873

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=96.58  E-value=0.00041  Score=44.64  Aligned_cols=53  Identities=23%  Similarity=0.376  Sum_probs=43.6

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ...|+++++++++.+            .+ ++.+.+++.+.+++++|+   +.|..|...+.+++.+++
T Consensus        91 ~~~G~~pv~vDi~~~------------~~-~~~~~~~~~~~~~t~avi---~vh~~G~~~~~~~i~~~~  143 (371)
T d2fnua1          91 LESGYTPVFAGIKND------------GN-IDELALEKLINERTKAIV---SVDYAGKSVEVESVQKLC  143 (371)
T ss_dssp             HHTTCEEEECCBCTT------------SS-BCGGGSGGGCCTTEEEEE---EECGGGCCCCHHHHHHHH
T ss_pred             eccCccccccccccc------------cc-ccchhhhhhccchhhccc---cccccccccccccccccc
Confidence            457999999999873            33 455778888899999999   557899999999998876

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.52  E-value=0.00073  Score=45.63  Aligned_cols=57  Identities=12%  Similarity=0.109  Sum_probs=47.3

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCC------ccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSR------TKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ..+|..++.|+++.             ++.+|+++|++.+.+.      +-+|+.+..++.||.+-+.++|.+||+
T Consensus       200 ~~lGl~~~~v~~d~-------------~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~  262 (476)
T d1js3a_         200 LIGGVKLKAIPSDG-------------KFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICH  262 (476)
T ss_dssp             HHHTCEEEEECCCT-------------TSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred             HhcCceEEEeccCC-------------CCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHH
Confidence            45688889999875             7889999999998542      346788888999999999999999874

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.96  E-value=0.0041  Score=39.65  Aligned_cols=55  Identities=16%  Similarity=0.109  Sum_probs=41.2

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCH--HHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDP--AELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~--~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      ...|++++++++++.            .+..+.  ..+......++++|+   +.+..|...+.+++.++|+
T Consensus        79 ~~~g~~pv~~Di~~~------------~~~~~~~~~~~~~~~~~~~~aii---~~~~~G~~~d~~~i~~~~~  135 (374)
T d1o69a_          79 CYLKAKPVFIDCDET------------YNIDVDLLKLAIKECEKKPKALI---LTHLYGNAAKMDEIVEICK  135 (374)
T ss_dssp             HHTTCEEEEECBCTT------------SSBCHHHHHHHHHHCSSCCCEEE---EECGGGCCCCHHHHHHHHH
T ss_pred             hhccceeEecccccc------------cccccccccccchhccccccccc---ccccccchhhhHHHHHHhh
Confidence            457999999999863            333333  334455677899999   7778999999999998873

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=95.50  E-value=0.008  Score=40.04  Aligned_cols=42  Identities=14%  Similarity=0.189  Sum_probs=33.2

Q ss_pred             CceeCHHHHHhhhcC----CccEEEEeCCCCcc-ccCCCHHHHHHHh
Q psy790           30 DFKLDPAELESKFSS----RTKLIILNTPHNPL-GKVFTREELEVIA   71 (72)
Q Consensus        30 ~~~~d~~~l~~~~~~----~~~~i~l~~P~NPt-G~~~~~~~l~~l~   71 (72)
                      .+.+|++++++.+.+    .+.++++.+|+|+. |.+++.+.++++.
T Consensus       155 ~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~  201 (456)
T d1c7ga_         155 KGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVH  201 (456)
T ss_dssp             TTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHH
T ss_pred             cccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHH
Confidence            568899999998854    34589999999997 5778888777654

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.0028  Score=40.26  Aligned_cols=42  Identities=12%  Similarity=0.173  Sum_probs=34.5

Q ss_pred             CceeCHHHHHhhh-cCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790           30 DFKLDPAELESKF-SSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus        30 ~~~~d~~~l~~~~-~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ...++.+.+++.+ ..+++++++++.+|.||.+.+.+++.+++
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~pi~~i~~~~  170 (388)
T d1h0ca_         128 GGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELC  170 (388)
T ss_dssp             TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHH
T ss_pred             ccccchHHHHHHhccCCcceEEEeeeeeccccccCHHHHHHHh
Confidence            3346777776655 56899999999999999999999998876

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.18  E-value=0.017  Score=36.00  Aligned_cols=39  Identities=10%  Similarity=0.107  Sum_probs=32.0

Q ss_pred             CHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +.+.......++++++++++-+|-||..++.+++.++++
T Consensus       116 ~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~  154 (361)
T d1m32a_         116 QAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAH  154 (361)
T ss_dssp             HHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHH
T ss_pred             hhhHHHHHhccCccceEEEeeecccccchhhhhhhhhhc
Confidence            344445556778999999999999999999999988763

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.78  E-value=0.1  Score=32.70  Aligned_cols=41  Identities=2%  Similarity=-0.027  Sum_probs=33.5

Q ss_pred             ceeCHHHHHhhh-cCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790           31 FKLDPAELESKF-SSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus        31 ~~~d~~~l~~~~-~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ...+.+.+++++ ..+++++++++-+|.||...+.+.+.+++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~~~~~~  161 (382)
T d2bkwa1         120 ESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAI  161 (382)
T ss_dssp             SCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHH
T ss_pred             CccchhHHHHHhhhccchheeeeeccccccccccchhhhhhc
Confidence            345677777666 45789999999999999999999988764

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.54  E-value=0.16  Score=30.29  Aligned_cols=42  Identities=26%  Similarity=0.415  Sum_probs=32.1

Q ss_pred             CceeCHHHHHhhhcCC------cc-EEEEeCCCCccccCCCHHHHHHHh
Q psy790           30 DFKLDPAELESKFSSR------TK-LIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus        30 ~~~~d~~~l~~~~~~~------~~-~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      .+..+++.+++.+...      ++ .++.+.++|+.|.+++.+.+.+|+
T Consensus       107 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~  155 (343)
T d1m6sa_         107 NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEIC  155 (343)
T ss_dssp             TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHH
T ss_pred             cCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHH
Confidence            4567899888888643      33 455667789999999999988876

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=92.52  E-value=0.058  Score=34.78  Aligned_cols=39  Identities=10%  Similarity=0.192  Sum_probs=31.5

Q ss_pred             CHHHHHhhh---cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           34 DPAELESKF---SSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        34 d~~~l~~~~---~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      |.+++++.+   .++.++|+++.+.+.+|.+.+.+++.+|++
T Consensus       153 d~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~  194 (383)
T d1bs0a_         153 DVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQ  194 (383)
T ss_dssp             CHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCceEEEecCCCCCCCcccchhHHHHHHH
Confidence            566776665   345678899999999999999999998873

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=90.82  E-value=0.06  Score=33.76  Aligned_cols=55  Identities=15%  Similarity=0.060  Sum_probs=39.8

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhh-cCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKF-SSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ..+...+.+.....             ...+.+..+... ..+++++++++-+|.||...+.+++.+++
T Consensus       113 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~~~i~~~~  168 (388)
T d2ch1a1         113 RYGADVRTIEGPPD-------------RPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQIC  168 (388)
T ss_dssp             HTTCEEEEEECCTT-------------SCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHH
T ss_pred             hhcccccccccccc-------------cccchhhhhhhhccCCcceeeeeecccccccccchhhhcchh
Confidence            45666666666542             224555555544 56799999999999999999999888776

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=89.65  E-value=0.3  Score=31.61  Aligned_cols=65  Identities=12%  Similarity=0.133  Sum_probs=40.6

Q ss_pred             cCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc----CCccEEEEeCCCCcc-ccCCCHHHHHHHh
Q psy790            4 AAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS----SRTKLIILNTPHNPL-GKVFTREELEVIA   71 (72)
Q Consensus         4 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~i~l~~P~NPt-G~~~~~~~l~~l~   71 (72)
                      ..|+.++.++.+....   -.......+.+|++++++.+.    ..++++++.+.+|.. |.+++.+.++++.
T Consensus       141 ~~G~~~~~~~~~~~~~---~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~  210 (467)
T d2v1pa1         141 INGCTVRNVYIKEAFD---TGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMY  210 (467)
T ss_dssp             HTTCEEEECBCTTTTC---TTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHH
T ss_pred             HcCCeeeecccccccc---cccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHH
Confidence            4578888877653210   000001145789999998874    246778888887765 5777777766553

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.19  E-value=0.54  Score=31.08  Aligned_cols=52  Identities=17%  Similarity=0.224  Sum_probs=38.6

Q ss_pred             CeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            7 GVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         7 ~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      .+.+.++++++            ++.+|.+++++.+. .++|+|++..-..|  ..++.+++++|++
T Consensus       136 ~~~~~y~~d~~------------~~~ID~d~l~~~a~~~kPklIi~G~S~y~--r~~d~~~~reIad  188 (405)
T d1kl1a_         136 YNFVAYGVDPE------------THVIDYDDVREKARLHRPKLIVAAASAYP--RIIDFAKFREIAD  188 (405)
T ss_dssp             SEEEEECBCTT------------TCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHH
T ss_pred             EEEEEeccchh------------cccccHHHHHHHHHhhCcceEEecccccc--cccChHHHHHHHh
Confidence            34566677654            78899999999884 57899887666544  5778889888873

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=86.72  E-value=0.36  Score=31.13  Aligned_cols=42  Identities=14%  Similarity=0.199  Sum_probs=28.9

Q ss_pred             CceeCHHHHHhhhcC----CccEEEEeCCCCccc-cCCCHHHHHHHh
Q psy790           30 DFKLDPAELESKFSS----RTKLIILNTPHNPLG-KVFTREELEVIA   71 (72)
Q Consensus        30 ~~~~d~~~l~~~~~~----~~~~i~l~~P~NPtG-~~~~~~~l~~l~   71 (72)
                      .+.+|++++++++.+    .+.+++++.++|..| .+++.+.++++.
T Consensus       163 ~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~  209 (465)
T d1ax4a_         163 KGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVY  209 (465)
T ss_dssp             TTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHH
T ss_pred             cCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHH
Confidence            577899999998853    344566666666654 567888777654

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=86.14  E-value=0.24  Score=32.93  Aligned_cols=50  Identities=20%  Similarity=0.296  Sum_probs=36.1

Q ss_pred             ccCCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            3 EAAGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         3 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      +..|.+++.++.+..+              .+.+    .+.+++.+|++.+| |-.|..-+.+++.+++
T Consensus       172 ~~~g~~vv~v~~~~~~--------------~~~~----~~~~~~Aavmi~~P-nt~G~~ed~~~i~~~~  221 (437)
T d1wyua1         172 EAVGAKLLTLPLEGGR--------------TPLP----EVGEEVGAVVVQNP-NFLGALEDLGPFAEAA  221 (437)
T ss_dssp             HHTTCEEEEECCBTTB--------------CCCC----CCCTTEEEEEEESS-CTTSBCCCHHHHHHHH
T ss_pred             ccceeeEEeeeccccc--------------chhh----hhccceeEEEEccc-cccccccchHHHHHHh
Confidence            4578999999876421              1111    25668899999999 5579998888887765

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=85.69  E-value=0.16  Score=31.48  Aligned_cols=33  Identities=12%  Similarity=0.123  Sum_probs=27.9

Q ss_pred             HhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790           39 ESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus        39 ~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ......+++++++++-+|.||...+.+++.+++
T Consensus       137 ~~~~~~~~~~v~~~~~~~~tg~~~~i~~i~~~~  169 (377)
T d1vjoa_         137 TALETHRPAILALVHAETSTGARQPLEGVGELC  169 (377)
T ss_dssp             HHHHHHCCSEEEEESEETTTTEECCCTTHHHHH
T ss_pred             hhhhcCcceeeeeeeeeccceeeechhhhhhhh
Confidence            344466889999999999999999999998876

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=84.24  E-value=2.1  Score=24.87  Aligned_cols=42  Identities=26%  Similarity=0.404  Sum_probs=31.9

Q ss_pred             CceeCHHHHHhhhcCC------cc-EEEEeCCCCccccCCCHHHHHHHh
Q psy790           30 DFKLDPAELESKFSSR------TK-LIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus        30 ~~~~d~~~l~~~~~~~------~~-~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      ....+++.+++.+...      +. .++..++.|+.|...+.+.+.+++
T Consensus       113 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  161 (345)
T d1v72a1         113 AAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIG  161 (345)
T ss_dssp             GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHH
T ss_pred             cccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHH
Confidence            5567899998888643      22 466778889999999998887764

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=82.55  E-value=2.2  Score=28.27  Aligned_cols=54  Identities=17%  Similarity=0.113  Sum_probs=38.8

Q ss_pred             CCCeEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhcCCccEEEEeCCCCccccCCCHHHHHHHh
Q psy790            5 AGGVPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFSSRTKLIILNTPHNPLGKVFTREELEVIA   71 (72)
Q Consensus         5 ~g~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~   71 (72)
                      .+..++.++...             ....+.+.+......++.++++.+|+++-+..-..+++.+++
T Consensus       175 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~a~v~v~~p~~~g~~e~~~~~~~~~~  228 (471)
T d1wyub1         175 AGYQVREIPSGP-------------EGEVDLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLC  228 (471)
T ss_dssp             TTCEEEEECBCT-------------TSSBCHHHHHHHCSTTEEEEEECSSCTTSCCCTTHHHHHHHH
T ss_pred             ccceeecccccc-------------cccccchhhhhhhhccccceeeccCCCcccccchhhhhHHHH
Confidence            345666666554             445688888888888889999999988876665666666543

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=81.93  E-value=1.6  Score=29.31  Aligned_cols=51  Identities=22%  Similarity=0.168  Sum_probs=38.0

Q ss_pred             eEEEeeCCCCCCCCCCCCCCCCCceeCHHHHHhhhc-CCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790            8 VPIYIPLQDTSPAEPGRHKSSADFKLDPAELESKFS-SRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus         8 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +.+.++++++            ++.+|.+++++... .++|+|++..-..|  ..++.+++++|++
T Consensus       154 ~~~~y~v~~~------------~~~IDyd~l~~~a~~~kPklIi~G~S~y~--r~~d~~~~reIad  205 (470)
T d1rv3a_         154 ESMAYKVNPD------------TGYIDYDRLEENARLFHPKLIIAGTSCYS--RNLDYGRLRKIAD  205 (470)
T ss_dssp             EEEEECBCTT------------TCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHH
T ss_pred             EeeEEEEecc------------cCcccHHHHHHHHHhhCcceEeechhhcc--ccCCHHHHHHHHh
Confidence            4556666654            67799999998874 58999887766555  4778888888873

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=81.10  E-value=1.8  Score=28.50  Aligned_cols=41  Identities=24%  Similarity=0.267  Sum_probs=31.5

Q ss_pred             CceeCHHHHHhhh-cCCccEEEEeCCCCccccCCCHHHHHHHhC
Q psy790           30 DFKLDPAELESKF-SSRTKLIILNTPHNPLGKVFTREELEVIAK   72 (72)
Q Consensus        30 ~~~~d~~~l~~~~-~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~   72 (72)
                      +..+|.+++++.. ..++|+|++..-.  ....++.+++++|++
T Consensus       149 ~~~IDyd~l~~~a~~~kPklIi~G~S~--y~r~~d~~~~reiad  190 (416)
T d1dfoa_         149 TGHIDYADLEKQAKEHKPKMIIGGFSA--YSGVVDWAKMREIAD  190 (416)
T ss_dssp             SSSBCHHHHHHHHHHHCCSEEEEECSS--CCSCCCHHHHHHHHH
T ss_pred             ccCccHHHHHHHHHHhccceEEecccc--cccccCHHHHHHHHH
Confidence            3459999998887 4589999877544  447889999998873