Psyllid ID: psy7914

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
Protein Sequence
MSVQTSSHYGEDIKSSGRAGAMDLYEGLSDPILQDWKDIVNLQKHWIGEPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLKLVCDGVYRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDSVSAL
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHccccccccccHHHHHHHHHccccccccEEEEEEEccccccccccccccccEEEEccccccccccccccEEEEEccccccccccHHHHccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccEEccccccccccccccccccEEEccccEEEEccccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEEcccccccccccccccHHHHHcccccHHHHcHHHHHHHHHHHccccccEEEEEEEccccccccccccccccEEEEcccccHHHHHHHcccEEEEEccHHHHcHcHHHHHHHHHHHHHHHcccEEcccccHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccEEEEcccccccEEEEEccccccccEcccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHcccccHHHHHHHHHHHHHHHcccEEEEEccccccccccEEEEccEEEcccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
msvqtsshygedikssgragAMDLyeglsdpilQDWKDIVNLQKhwigepngvrfefqilpqpegtsnsaptadtlsiwlpedtiEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKsivssdpmlrdrkkpvcgesLNQVLKLVCDGvyrrrrsisspsdfgvssvggtlegkrrednfyvlsmfpypsgslhmghvRVYTISDTLARYYAMngknvfqpmgwdafglpaenaahqhgidprewtvgnIATMKSQLqgfgckfnweselatcdpkyyKWTQALFLDLYHAGlvyrkeatvnwdpidntvladeqvdeQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDSVSAL
Flexible Loop (DISEMBL)
msvqtsshygedikssgrAGAMDLYEGLSDPILQDWKDIVNLQKHWIGEPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKsshilasktkeKLTEnvkhqienkyksivssdpmlrDRKKpvcgeslnqvLKLVCDGVYRrrrsisspsdfgvssvggtlegkrreDNFYVLSMFPypsgslhmgHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTvladeqvdeqgiswrsgarvekrrlsqwfirttrlanlvslvdsvsal
Low Complexity Region (SEG)
MSVQTSSHYGEDIKSSGRAGAMDLYEGLSDPILQDWKDIVNLQKHWIGEPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLKLVCDGVYRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDSVSAL
Disordered region (IsUnstruct)
*********************MDLYEGLSDPILQDWKDIVNLQKHWIGEPNGVRFEFQIL**************TLSIWLPEDTIEDVAKSQGQYITVKSSHIL************************************VCGESLNQVLKLVCDGVYRRR**********************REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLV******
Disordered Region (DISOPRED)
*************KSSGRAGAMDLYEGLSDPILQDWKDIVNLQKHWIGEPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILA*********NVKHQIENKYKSIVSSDPMLRDRKKPVC***************YRRRRSISSPSDFGV***************FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDSVSA*
Disordered Region (DISEMBL)
*************KSSGRAGAMDLYEGLSDPILQDWKDIVNLQKHWIGEPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLKLVCDGVYRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDSVSAL
Disordered Region (DISPRO)
*************KSSGRAGAMDLYEGLSDPILQDWKDIVNLQKHWIGEPNGVRFEFQILPQP****NSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLKLVCDGVYRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDSVSAL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVQTSSHYGEDIKSSGRAGAMDLYEGLSDPILQDWKDIVNLQKHWIGEPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLKLVCDGVYRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDSVSAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	365	2.2.26 [Sep-21-2011]
Q15031	903	Probable leucine--tRNA li	yes	N/A	0.463	0.187	0.634	8e-65
Q5RDP4	903	Probable leucine--tRNA li	yes	N/A	0.463	0.187	0.634	1e-64
Q31AX4	856	Leucine--tRNA ligase OS=P	yes	N/A	0.484	0.206	0.638	3e-64
A3PCW8	856	Leucine--tRNA ligase OS=P	yes	N/A	0.463	0.197	0.656	5e-64
A8G4T7	856	Leucine--tRNA ligase OS=P	yes	N/A	0.484	0.206	0.627	6e-64
A2BR45	856	Leucine--tRNA ligase OS=P	yes	N/A	0.484	0.206	0.632	9e-64
A2BWL7	864	Leucine--tRNA ligase OS=P	yes	N/A	0.457	0.193	0.634	1e-63
Q7V1I2	858	Leucine--tRNA ligase OS=P	yes	N/A	0.484	0.206	0.627	2e-63
Q8VDC0	902	Probable leucine--tRNA li	yes	N/A	0.468	0.189	0.622	3e-63
P73274	869	Leucine--tRNA ligase OS=S	N/A	N/A	0.454	0.191	0.650	3e-63

>sp|Q15031|SYLM_HUMAN Probable leucine--tRNA ligase, mitochondrial OS=Homo sapiens GN=LARS2 PE=1 SV=2

 Score =  247 bits (631), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 111/175 (63%), Positives = 130/175 (74%)

Query: 180 EGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPA 239
           E  + +  FYVLSMFPYPSG LHMGHVRVYTISDT+AR+  M G  V  PMGWDAFGLPA
Sbjct: 76  EADKSKPKFYVLSMFPYPSGKLHMGHVRVYTISDTIARFQKMRGMQVINPMGWDAFGLPA 135

Query: 240 ENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHA 299
           ENAA +  + P+ WT  NI  M+ QL   G  F+W+ E+ TC P YYKWTQ LF+ LY A
Sbjct: 136 ENAAVERNLHPQSWTQSNIKHMRKQLDRLGLCFSWDREITTCLPDYYKWTQYLFIKLYEA 195

Query: 300 GLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLAN 354
           GL Y+KEA VNWDP+D TVLA+EQVDE G SWRSGA+VE++ L QWFI+TT  A 
Sbjct: 196 GLAYQKEALVNWDPVDQTVLANEQVDEHGCSWRSGAKVEQKYLRQWFIKTTAYAK 250

Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 4

>sp|Q5RDP4|SYLM_PONAB Probable leucine--tRNA ligase, mitochondrial OS=Pongo abelii GN=LARS2 PE=2 SV=1

 Score =  247 bits (630), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 111/175 (63%), Positives = 129/175 (73%)

Query: 180 EGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPA 239
           E  + +  FYVLSMFPYPSG LHMGHVRVYTISDT+AR+  M G  V  PMGWDAFGLPA
Sbjct: 76  EADKSKPKFYVLSMFPYPSGKLHMGHVRVYTISDTIARFQKMRGMQVINPMGWDAFGLPA 135

Query: 240 ENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHA 299
           ENAA +  + P  WT  NI  M+ QL   G  F+W+ E+ TC P YYKWTQ LF+ LY A
Sbjct: 136 ENAAVERNLHPESWTQSNIKHMRKQLDRLGLCFSWDREITTCLPDYYKWTQYLFIKLYEA 195

Query: 300 GLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLAN 354
           GL Y+KEA VNWDP+D TVLA+EQVDE G SWRSGA+VE++ L QWFI+TT  A 
Sbjct: 196 GLAYQKEALVNWDPVDQTVLANEQVDEHGCSWRSGAKVEQKYLRQWFIKTTAYAK 250

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|Q31AX4|SYL_PROM9 Leucine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9312) GN=leuS PE=3 SV=1

 Score =  245 bits (626), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 113/177 (63%), Positives = 131/177 (74%)

Query: 178 TLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGL 237
           T E     D FY LSMFPYPSG+LHMGHVR Y I+D +AR+    GK+V  PMGWDAFGL
Sbjct: 36  TDELTENSDKFYALSMFPYPSGNLHMGHVRNYVITDLIARFQRFKGKSVLHPMGWDAFGL 95

Query: 238 PAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLY 297
           PAENAA + GI P  WT  NI+ MKSQL+  G   +W+ E ATCD  YY WTQ LFL+LY
Sbjct: 96  PAENAAIERGISPSVWTKKNISHMKSQLKLLGLSVDWDREFATCDENYYIWTQYLFLELY 155

Query: 298 HAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLAN 354
            AGLVY+KE+ VNWDPIDNTVLA+EQVD +G SWRSGA VEK+ L QWF+R T  A+
Sbjct: 156 KAGLVYQKESEVNWDPIDNTVLANEQVDSEGKSWRSGALVEKKLLKQWFLRITNYAD 212

Prochlorococcus marinus (strain MIT 9312) (taxid: 74546)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|A3PCW8|SYL_PROM0 Leucine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9301) GN=leuS PE=3 SV=1

 Score =  244 bits (624), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 111/169 (65%), Positives = 129/169 (76%)

Query: 186 DNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ 245
           D FY LSMFPYPSG+LHMGHVR Y I+D +AR+    GK+V  PMGWDAFGLPAENAA +
Sbjct: 44  DKFYALSMFPYPSGNLHMGHVRNYVITDLIARFQRFKGKSVLHPMGWDAFGLPAENAAIE 103

Query: 246 HGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK 305
            GI P  WT  NI+ MKSQL+  G   +W+ E ATCD  YY WTQ LFL+LY AGLVY+K
Sbjct: 104 RGISPSVWTKKNISHMKSQLKLLGLSVDWDREFATCDENYYVWTQYLFLELYKAGLVYQK 163

Query: 306 EATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLAN 354
           E+ VNWDPIDNTVLA+EQVD +G SWRSGA VEK+ L QWF+R T  A+
Sbjct: 164 ESEVNWDPIDNTVLANEQVDSEGKSWRSGAIVEKKLLKQWFLRITNYAD 212

Prochlorococcus marinus (strain MIT 9301) (taxid: 167546)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|A8G4T7|SYL_PROM2 Leucine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9215) GN=leuS PE=3 SV=1

 Score =  244 bits (624), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 111/177 (62%), Positives = 132/177 (74%)

Query: 178 TLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGL 237
           T E     D FY LSMFPYPSG+LHMGHVR Y I+D +AR++   GK+V  PMGWDAFGL
Sbjct: 36  TDELTENSDKFYALSMFPYPSGNLHMGHVRNYVITDLIARFHRFKGKSVLHPMGWDAFGL 95

Query: 238 PAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLY 297
           PAENAA + GI P  WT  NI+ M+SQL+  G   +W+ E ATCD  YY WTQ LFL+LY
Sbjct: 96  PAENAAIERGISPSVWTKQNISHMRSQLKLLGLSVDWDREFATCDENYYIWTQYLFLELY 155

Query: 298 HAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLAN 354
            AGLVY+KE+ VNWDP+DNTVLA+EQVD +G SWRSGA VEK+ L QWF+R T  A+
Sbjct: 156 KAGLVYQKESEVNWDPVDNTVLANEQVDSEGKSWRSGAVVEKKLLKQWFLRITNYAD 212

Prochlorococcus marinus (strain MIT 9215) (taxid: 93060)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|A2BR45|SYL_PROMS Leucine--tRNA ligase OS=Prochlorococcus marinus (strain AS9601) GN=leuS PE=3 SV=1

 Score =  244 bits (622), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 112/177 (63%), Positives = 131/177 (74%)

Query: 178 TLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGL 237
           T E     D FY LSMFPYPSG+LHMGHVR Y I+D +AR+    GK+V  PMGWDAFGL
Sbjct: 36  TDELTENSDKFYALSMFPYPSGNLHMGHVRNYVITDLIARFQRFKGKSVLHPMGWDAFGL 95

Query: 238 PAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLY 297
           PAENAA + GI P  WT  NI+ MKSQL+  G   +W+ E ATCD  YY WTQ LFL+LY
Sbjct: 96  PAENAAIERGISPSVWTKKNISHMKSQLKLLGLSVDWDREFATCDENYYIWTQYLFLELY 155

Query: 298 HAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLAN 354
            +GLVY+KE+ VNWDPIDNTVLA+EQVD +G SWRSGA VEK+ L QWF+R T  A+
Sbjct: 156 KSGLVYQKESEVNWDPIDNTVLANEQVDSEGKSWRSGAVVEKKLLKQWFLRITNYAD 212

Prochlorococcus marinus (strain AS9601) (taxid: 146891)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|A2BWL7|SYL_PROM5 Leucine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9515) GN=leuS PE=3 SV=1

 Score =  243 bits (620), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 106/167 (63%), Positives = 133/167 (79%)

Query: 184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAA 243
           +++ FY LSMFPYPSG+LHMGHVR Y I+D +AR+    GK++  PMGWDAFGLPAENAA
Sbjct: 46  KKEKFYALSMFPYPSGNLHMGHVRNYVITDLIARFQRFQGKSLLHPMGWDAFGLPAENAA 105

Query: 244 HQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVY 303
            + GI+P +WT  NIA MKSQL+  G   +W+ E ATCD  YY WTQ LFL+L+ +GLVY
Sbjct: 106 IERGINPNDWTKKNIAHMKSQLKLLGLSVDWDKEFATCDENYYLWTQFLFLELHKSGLVY 165

Query: 304 RKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTT 350
           +KE+ VNWDPIDNTVLA+EQVD +G SWRSGA+VEK+ L+QWF++ T
Sbjct: 166 QKESEVNWDPIDNTVLANEQVDSEGKSWRSGAKVEKKLLTQWFLKIT 212

Prochlorococcus marinus (strain MIT 9515) (taxid: 167542)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|Q7V1I2|SYL_PROMP Leucine--tRNA ligase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=leuS PE=3 SV=1

 Score =  243 bits (620), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 111/177 (62%), Positives = 133/177 (75%)

Query: 177 GTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFG 236
            T E    ++ FY LSMFPYPSG+LHMGHVR Y I+D +AR+    GK V  PMGWDAFG
Sbjct: 35  NTDEQASNKEKFYALSMFPYPSGNLHMGHVRNYVITDLIARFQRFQGKVVLHPMGWDAFG 94

Query: 237 LPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDL 296
           LPAENAA + GI+P +WT  NIA MKSQL+  G   +W+ E ATCD  YY WTQ LFL+L
Sbjct: 95  LPAENAAIERGINPDKWTKQNIAHMKSQLKLLGLSVDWDREFATCDENYYVWTQFLFLEL 154

Query: 297 YHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLA 353
           + AGLVY+KE+ VNWDPIDNTVLA+EQVD +G SWRSGA VEK+ L+QWF++ T  A
Sbjct: 155 HKAGLVYQKESEVNWDPIDNTVLANEQVDSEGKSWRSGAIVEKKLLTQWFLKITDYA 211

Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) (taxid: 59919)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|Q8VDC0|SYLM_MOUSE Probable leucine--tRNA ligase, mitochondrial OS=Mus musculus GN=Lars2 PE=2 SV=1

 Score =  242 bits (618), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 109/175 (62%), Positives = 129/175 (73%)

Query: 180 EGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPA 239
           E  + +  FY+LSMFPYPSG LHMGHVRVYT+SDT+AR+  M G  V  PMGWDAFGLPA
Sbjct: 75  EEDKLKPKFYLLSMFPYPSGKLHMGHVRVYTLSDTIARFQKMRGMQVINPMGWDAFGLPA 134

Query: 240 ENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHA 299
           ENAA +  + P  WT  NI  M+ QL   G  F+W+ E+ TC P YYKWTQ LF+ LY A
Sbjct: 135 ENAAIERNLHPESWTQSNIKHMRKQLDRLGLCFSWDREITTCLPDYYKWTQYLFIKLYEA 194

Query: 300 GLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLAN 354
           GL Y+KEA VNWDP+D TVLA+EQV+E G SWRSGA+VEK+ L QWFI+TT  A 
Sbjct: 195 GLAYQKEALVNWDPVDQTVLANEQVNEYGCSWRSGAKVEKKYLRQWFIKTTAYAK 249

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|P73274|SYL_SYNY3 Leucine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=leuS PE=3 SV=1

 Score =  242 bits (618), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 108/166 (65%), Positives = 128/166 (77%)

Query: 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHG 247
           FY LSMFPYPSG+LHMGHVR YTI+D +AR   M G  V  PMGWDAFGLPAENAA + G
Sbjct: 35  FYALSMFPYPSGNLHMGHVRNYTITDVIARLKRMQGYQVLHPMGWDAFGLPAENAAIERG 94

Query: 248 IDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEA 307
           I P++WT  NIA M++QLQ  G   +WE E+ATC P YY+WTQ LFL+ + AGL Y+KEA
Sbjct: 95  IPPKQWTEKNIAQMRAQLQQLGLSIDWEREVATCAPDYYRWTQWLFLEFFQAGLAYQKEA 154

Query: 308 TVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLA 353
           TVNWDPID TVLA+EQVD +G SWRSGA VE++ L QWF++ T  A
Sbjct: 155 TVNWDPIDQTVLANEQVDSEGRSWRSGAMVERKLLRQWFLKITDYA 200

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
91078378	866	PREDICTED: similar to Leucyl-tRNA synthe	0.438	0.184	0.712	2e-70
195491875	869	GE21469 [Drosophila yakuba] gi|194179852	0.449	0.188	0.674	2e-69
21355409	869	Leucyl-tRNA synthetase [Drosophila melan	0.449	0.188	0.674	3e-69
195587864	869	GD13863 [Drosophila simulans] gi|1941956	0.446	0.187	0.674	4e-69
194866776	870	GG15248 [Drosophila erecta] gi|190653726	0.449	0.188	0.674	5e-69
195337561	869	GM14681 [Drosophila sechellia] gi|194128	0.446	0.187	0.674	5e-69
198463038	871	GA20381 [Drosophila pseudoobscura pseudo	0.424	0.177	0.668	7e-69
195167926	871	GL17916 [Drosophila persimilis] gi|19410	0.424	0.177	0.668	1e-68
195428976	877	GK16600 [Drosophila willistoni] gi|19415	0.452	0.188	0.655	2e-68
328702417	872	PREDICTED: probable leucyl-tRNA syntheta	0.484	0.202	0.649	4e-67

>gi|91078378|ref|XP_974191.1| PREDICTED: similar to Leucyl-tRNA synthetase CG7479-PA [Tribolium castaneum] gi|270003885|gb|EFA00333.1| hypothetical protein TcasGA2_TC003172 [Tribolium castaneum]

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 124/174 (71%), Positives = 140/174 (80%)

Query: 180 EGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPA 239
           E +   D +YVLSMFPYPSGSLHMGHVRVYTISD +AR+  MNGKNV  P+GWDAFGLPA
Sbjct: 56  ENETVRDKYYVLSMFPYPSGSLHMGHVRVYTISDVIARFQRMNGKNVIHPIGWDAFGLPA 115

Query: 240 ENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHA 299
           ENAA +  I P++WT  NI+ MKSQLQ  GC F W  ELATCDP YYKWTQ LFL LY +
Sbjct: 116 ENAAIERQIAPQDWTQSNISHMKSQLQRLGCSFEWGRELATCDPSYYKWTQDLFLKLYDS 175

Query: 300 GLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLA 353
           GLVY+K+A VNWDP+D TVLADEQVDE G SWRSGA+VEK+ L QWF+RTTR A
Sbjct: 176 GLVYQKKALVNWDPVDQTVLADEQVDENGCSWRSGAKVEKKLLRQWFVRTTRFA 229

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195491875|ref|XP_002093751.1| GE21469 [Drosophila yakuba] gi|194179852|gb|EDW93463.1| GE21469 [Drosophila yakuba]

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 120/178 (67%), Positives = 140/178 (78%)

Query: 176 GGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAF 235
           GG    K  +D +YVLSMFPYPSG+LHMGHVRVYTI+D++AR+  M GKNVFQPMGWD+F
Sbjct: 52  GGQFNPKDSQDKYYVLSMFPYPSGNLHMGHVRVYTIADSVARFQRMCGKNVFQPMGWDSF 111

Query: 236 GLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLD 295
           GLPAENAA+Q G++P  WT  NI+ MK QLQ  GC F+W  EL+TC PKYYKWTQ LFL 
Sbjct: 112 GLPAENAANQRGVEPASWTKQNISQMKEQLQRLGCSFDWNHELSTCSPKYYKWTQHLFLM 171

Query: 296 LYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLA 353
           L+  GL Y+ EA VNWDP+D TVLADEQVD  G SWRSGA+VEK+ L QWFIRT+  A
Sbjct: 172 LHRHGLAYQNEALVNWDPVDKTVLADEQVDANGCSWRSGAKVEKKLLRQWFIRTSAYA 229

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21355409|ref|NP_647932.1| Leucyl-tRNA synthetase [Drosophila melanogaster] gi|7292541|gb|AAF47943.1| Leucyl-tRNA synthetase [Drosophila melanogaster] gi|19528361|gb|AAL90295.1| LD44376p [Drosophila melanogaster]

 Score =  268 bits (685), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 120/178 (67%), Positives = 140/178 (78%)

Query: 176 GGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAF 235
           GG    K  +D +YVLSMFPYPSG+LHMGHVRVYTI+D++AR+  M GKNVFQPMGWD+F
Sbjct: 52  GGQFNPKDSQDKYYVLSMFPYPSGNLHMGHVRVYTIADSVARFQRMCGKNVFQPMGWDSF 111

Query: 236 GLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLD 295
           GLPAENAA+Q G++P  WT  NIA MK QL+  GC F+W  EL+TC PKYYKWTQ LFL 
Sbjct: 112 GLPAENAANQRGVEPASWTEQNIAQMKEQLKRLGCSFDWNHELSTCSPKYYKWTQHLFLM 171

Query: 296 LYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLA 353
           L+  GL Y+ EA VNWDP+D TVLADEQVD  G SWRSGA+VEK+ L QWFIRT+  A
Sbjct: 172 LHRHGLAYQNEALVNWDPVDKTVLADEQVDANGCSWRSGAKVEKKLLRQWFIRTSAYA 229

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195587864|ref|XP_002083681.1| GD13863 [Drosophila simulans] gi|194195690|gb|EDX09266.1| GD13863 [Drosophila simulans]

 Score =  268 bits (684), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 120/178 (67%), Positives = 140/178 (78%)

Query: 176 GGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAF 235
           GG    K  +D +YVLSMFPYPSG+LHMGHVRVYTI+D++AR+  M GKNVFQPMGWD+F
Sbjct: 52  GGQFNPKDSKDKYYVLSMFPYPSGNLHMGHVRVYTIADSVARFQRMCGKNVFQPMGWDSF 111

Query: 236 GLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLD 295
           GLPAENAA+Q G++P  WT  NIA MK QL+  GC F+W  EL+TC PKYYKWTQ LFL 
Sbjct: 112 GLPAENAANQRGVEPASWTEQNIAQMKEQLKRLGCSFDWNHELSTCSPKYYKWTQHLFLM 171

Query: 296 LYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLA 353
           L+  GL Y+ EA VNWDP+D TVLADEQVD  G SWRSGA+VEK+ L QWFIRT+  A
Sbjct: 172 LHRHGLAYQNEALVNWDPVDKTVLADEQVDANGCSWRSGAKVEKKLLRQWFIRTSAYA 229

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194866776|ref|XP_001971943.1| GG15248 [Drosophila erecta] gi|190653726|gb|EDV50969.1| GG15248 [Drosophila erecta]

 Score =  267 bits (683), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 120/178 (67%), Positives = 140/178 (78%)

Query: 176 GGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAF 235
           GG    K  +D +YVLSMFPYPSG+LHMGHVRVYTI+D++AR+  M GKNVFQPMGWD+F
Sbjct: 52  GGQFNPKDSKDKYYVLSMFPYPSGNLHMGHVRVYTIADSVARFQRMCGKNVFQPMGWDSF 111

Query: 236 GLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLD 295
           GLPAENAA+Q G++P  WT  NIA MK QL+  GC F+W  EL+TC PKYYKWTQ LFL 
Sbjct: 112 GLPAENAANQRGVEPASWTEQNIAQMKEQLKRLGCSFDWNHELSTCSPKYYKWTQHLFLM 171

Query: 296 LYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLA 353
           L+  GL Y+ EA VNWDP+D TVLADEQVD  G SWRSGA+VEK+ L QWFIRT+  A
Sbjct: 172 LHRHGLAYQNEALVNWDPVDKTVLADEQVDANGCSWRSGAKVEKKLLRQWFIRTSAYA 229

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195337561|ref|XP_002035397.1| GM14681 [Drosophila sechellia] gi|194128490|gb|EDW50533.1| GM14681 [Drosophila sechellia]

 Score =  267 bits (683), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 120/178 (67%), Positives = 139/178 (78%)

Query: 176 GGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAF 235
           GG    K  +D +YVLSMFPYPSG+LHMGHVRVYTI+D++AR+  M GKNVFQPMGWD+F
Sbjct: 52  GGQFNPKDSKDKYYVLSMFPYPSGNLHMGHVRVYTIADSVARFQRMCGKNVFQPMGWDSF 111

Query: 236 GLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLD 295
           GLPAENAA+Q G++P  WT  NIA MK QL+  GC F+W  EL TC PKYYKWTQ LFL 
Sbjct: 112 GLPAENAANQRGVEPASWTEQNIAQMKEQLKRLGCSFDWNHELTTCSPKYYKWTQHLFLM 171

Query: 296 LYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLA 353
           L+  GL Y+ EA VNWDP+D TVLADEQVD  G SWRSGA+VEK+ L QWFIRT+  A
Sbjct: 172 LHRHGLAYQNEALVNWDPVDKTVLADEQVDANGCSWRSGAKVEKKLLRQWFIRTSAYA 229

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198463038|ref|XP_001352664.2| GA20381 [Drosophila pseudoobscura pseudoobscura] gi|198151087|gb|EAL30162.2| GA20381 [Drosophila pseudoobscura pseudoobscura]

 Score =  267 bits (682), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 119/178 (66%), Positives = 139/178 (78%)

Query: 176 GGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAF 235
           GG    K+  D +YVLSMFPYPSG+LHMGHVRVYTISD +AR+  M GKNVFQP+GWD+F
Sbjct: 52  GGQFNAKQPADKYYVLSMFPYPSGNLHMGHVRVYTISDAVARFQRMCGKNVFQPIGWDSF 111

Query: 236 GLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLD 295
           GLPAENAA+Q G++P  WT  NIA MK QLQ  GC F+W  EL+TC P+YY+WTQ LFL 
Sbjct: 112 GLPAENAANQRGVEPAAWTQQNIAQMKQQLQRLGCSFDWTHELSTCSPQYYRWTQHLFLM 171

Query: 296 LYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLA 353
           L+  GL Y+ EA VNWDP+D TVLADEQVD  G SWRSGA+VEK+ L QWFIRT+  A
Sbjct: 172 LHKRGLAYQNEALVNWDPVDKTVLADEQVDANGCSWRSGAKVEKKLLKQWFIRTSAYA 229

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195167926|ref|XP_002024783.1| GL17916 [Drosophila persimilis] gi|194108213|gb|EDW30256.1| GL17916 [Drosophila persimilis]

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 119/178 (66%), Positives = 139/178 (78%)

Query: 176 GGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAF 235
           GG    K+  D +YVLSMFPYPSG+LHMGHVRVYTISD +AR+  M GKNVFQP+GWD+F
Sbjct: 52  GGQFNAKQPADKYYVLSMFPYPSGNLHMGHVRVYTISDAVARFQRMCGKNVFQPIGWDSF 111

Query: 236 GLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLD 295
           GLPAENAA+Q G++P  WT  NIA MK QLQ  GC F+W  EL+TC P+YY+WTQ LFL 
Sbjct: 112 GLPAENAANQRGVEPATWTQQNIAQMKQQLQRLGCSFDWTHELSTCSPQYYRWTQHLFLM 171

Query: 296 LYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLA 353
           L+  GL Y+ EA VNWDP+D TVLADEQVD  G SWRSGA+VEK+ L QWFIRT+  A
Sbjct: 172 LHKRGLAYQNEALVNWDPVDKTVLADEQVDANGCSWRSGAKVEKKLLKQWFIRTSAYA 229

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195428976|ref|XP_002062540.1| GK16600 [Drosophila willistoni] gi|194158625|gb|EDW73526.1| GK16600 [Drosophila willistoni]

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 116/177 (65%), Positives = 140/177 (79%)

Query: 177 GTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFG 236
           G    ++ +D +YVLSMFPYPSG+LHMGHVRVYTISD +AR++ M GKNVFQP+GWD+FG
Sbjct: 53  GQFNRQQSQDKYYVLSMFPYPSGNLHMGHVRVYTISDAVARFHRMCGKNVFQPIGWDSFG 112

Query: 237 LPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDL 296
           LPAENAA+Q G++P +WT  NI+ MK QL+  GC F+W  EL+TC PKYYKWTQ LFL L
Sbjct: 113 LPAENAANQRGVEPSQWTDQNISQMKQQLERLGCSFDWSHELSTCSPKYYKWTQKLFLML 172

Query: 297 YHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLA 353
           +  GL Y+ EA VNWDP+D TVLADEQVD  G SWRSG +VEK+ L QWFIRT+  A
Sbjct: 173 HQQGLAYQNEALVNWDPVDQTVLADEQVDANGCSWRSGVKVEKKLLKQWFIRTSSFA 229

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328702417|ref|XP_003241894.1| PREDICTED: probable leucyl-tRNA synthetase, mitochondrial-like [Acyrthosiphon pisum]

 Score =  261 bits (667), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 115/177 (64%), Positives = 138/177 (77%)

Query: 177 GTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFG 236
           G+ +    +  FYVLSMFPYPSG LHMGHVRVY I+D++AR++ M+G+NVFQPMGWDAFG
Sbjct: 54  GSFDKNNIDKKFYVLSMFPYPSGHLHMGHVRVYVIADSIARFHRMHGQNVFQPMGWDAFG 113

Query: 237 LPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDL 296
           LPAENAA  HG+   +WT  NI  MK QLQ  GC F+W +EL TCDP YYKWTQ  FL +
Sbjct: 114 LPAENAAILHGLPADKWTSSNIDHMKKQLQELGCSFDWSNELTTCDPTYYKWTQWFFLKM 173

Query: 297 YHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLA 353
           + +GLVY KEA VNWDP+D TVLA+EQVDE G SWRSGA VEK+ L QWFI+TT+ +
Sbjct: 174 FQSGLVYSKEAEVNWDPVDETVLANEQVDENGRSWRSGAIVEKKVLKQWFIKTTQFS 230

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
FB|FBgn0027085	869	Aats-leu "Leucyl-tRNA syntheta	0.506	0.212	0.652	8.7e-69
UNIPROTKB|E1BXI7	906	LARS2 "Uncharacterized protein	0.504	0.203	0.612	8.7e-62
ZFIN|ZDB-GENE-070928-3	891	lars2 "leucyl-tRNA synthetase	0.504	0.206	0.602	9.8e-61
UNIPROTKB|F1MGP9	616	LARS2 "Uncharacterized protein	0.504	0.298	0.607	1.2e-60
UNIPROTKB|E1B768	903	LARS2 "Uncharacterized protein	0.504	0.203	0.607	2.1e-60
UNIPROTKB|Q15031	903	LARS2 "Probable leucine--tRNA	0.504	0.203	0.607	2.1e-60
UNIPROTKB|E2RQR3	903	LARS2 "Uncharacterized protein	0.504	0.203	0.607	2.7e-60
MGI|MGI:2142973	902	Lars2 "leucyl-tRNA synthetase,	0.654	0.264	0.495	7.7e-60
RGD|1308429	902	Lars2 "leucyl-tRNA synthetase	0.654	0.264	0.495	2.2e-59
ASPGD|ASPL0000008770	990	AN6526 [Emericella nidulans (t	0.556	0.205	0.559	3e-59

FB|FBgn0027085 Aats-leu "Leucyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)]

 Score = 675 (242.7 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
 Identities = 122/187 (65%), Positives = 144/187 (77%)

Query:   176 GGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAF 235
             GG    K  +D +YVLSMFPYPSG+LHMGHVRVYTI+D++AR+  M GKNVFQPMGWD+F
Sbjct:    52 GGQFNPKDSQDKYYVLSMFPYPSGNLHMGHVRVYTIADSVARFQRMCGKNVFQPMGWDSF 111

Query:   236 GLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLD 295
             GLPAENAA+Q G++P  WT  NIA MK QL+  GC F+W  EL+TC PKYYKWTQ LFL 
Sbjct:   112 GLPAENAANQRGVEPASWTEQNIAQMKEQLKRLGCSFDWNHELSTCSPKYYKWTQHLFLM 171

Query:   296 LYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANL 355
             L+  GL Y+ EA VNWDP+D TVLADEQVD  G SWRSGA+VEK+ L QWFIRT+  A  
Sbjct:   172 LHRHGLAYQNEALVNWDPVDKTVLADEQVDANGCSWRSGAKVEKKLLRQWFIRTSAYAK- 230

Query:   356 VSLVDSV 362
               L+D +
Sbjct:   231 -QLLDGL 236

GO:0006429 "leucyl-tRNA aminoacylation" evidence=ISS;NAS

GO:0004823 "leucine-tRNA ligase activity" evidence=ISS;NAS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|E1BXI7 LARS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 633 (227.9 bits), Expect = 8.7e-62, P = 8.7e-62
 Identities = 114/186 (61%), Positives = 137/186 (73%)

Query:   180 EGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPA 239
             E  +    FYVLSMFPYPSG LHMGHVRVYTISDT+AR+  M G  V  PMGWDAFGLPA
Sbjct:    76 ETDKSRPKFYVLSMFPYPSGKLHMGHVRVYTISDTVARFQKMRGMQVLNPMGWDAFGLPA 135

Query:   240 ENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHA 299
             ENAA +HG+ P  WT  NI  M+ Q    G  F WE E+ TC P+YYKWTQ LFL L+ +
Sbjct:   136 ENAAIEHGLHPASWTQSNIQHMREQFDALGLSFTWEREITTCLPEYYKWTQYLFLKLFES 195

Query:   300 GLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLV 359
             G+VY+KEA VNWDP+D TVLA+EQVD+ G SWRSGA+VE++ L QWFI+TT  A   ++ 
Sbjct:   196 GMVYQKEALVNWDPVDQTVLANEQVDDNGCSWRSGAKVEQKYLKQWFIKTTAYAK--AMF 253

Query:   360 DSVSAL 365
             D++S L
Sbjct:   254 DALSDL 259

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

GO:0004823 "leucine-tRNA ligase activity" evidence=IEA

GO:0006429 "leucyl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-070928-3 lars2 "leucyl-tRNA synthetase 2, mitochondrial" [Danio rerio (taxid:7955)]

 Score = 623 (224.4 bits), Expect = 9.8e-61, P = 9.8e-61
 Identities = 112/186 (60%), Positives = 136/186 (73%)

Query:   180 EGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPA 239
             E +     FYVLSMFPYPSG LHMGHVRVY ISDT++ +  M G  V  PMGWDAFGLPA
Sbjct:    63 EDQSSRKKFYVLSMFPYPSGRLHMGHVRVYAISDTISHFQKMRGHQVLNPMGWDAFGLPA 122

Query:   240 ENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHA 299
             ENAA +  +DP +WT  NI +M++QL   G  FNW+ E+ TC P YYKWTQ LF+ ++ A
Sbjct:   123 ENAAIERNLDPEDWTRSNIESMRTQLDSLGLCFNWDREITTCLPDYYKWTQYLFIKMFEA 182

Query:   300 GLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLV 359
             GL Y+KEA VNWDP+D TVLADEQVDE G SWRSGA VE++ L QWFI+TT  A    L+
Sbjct:   183 GLAYQKEALVNWDPVDQTVLADEQVDENGCSWRSGAPVEQKMLKQWFIKTTNYAK--PLL 240

Query:   360 DSVSAL 365
             D+++ L
Sbjct:   241 DALADL 246

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

GO:0006429 "leucyl-tRNA aminoacylation" evidence=IEA

GO:0004823 "leucine-tRNA ligase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|F1MGP9 LARS2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 113/186 (60%), Positives = 136/186 (73%)

Query:   180 EGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPA 239
             E  + +  FYVLSMFPYPSG LHMGHVRVYTISDT+AR+  M G  V  PMGWDAFGLPA
Sbjct:    76 EADKSKPKFYVLSMFPYPSGKLHMGHVRVYTISDTIARFQKMRGMQVINPMGWDAFGLPA 135

Query:   240 ENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHA 299
             ENAA +  + P  WT  NI  M+ QL   G  F+W+ E+ TC P YYKWTQ LF+ LY A
Sbjct:   136 ENAAIERNLHPESWTQSNIRHMRKQLDQLGLCFSWDREVTTCLPDYYKWTQYLFIKLYEA 195

Query:   300 GLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLV 359
             GL Y+KEA VNWDP+D TVLA+EQVDE G SWRSGA+VE++ L QWFI+TT  A   ++ 
Sbjct:   196 GLAYQKEALVNWDPVDQTVLANEQVDEHGCSWRSGAKVEQKYLRQWFIKTTAYAK--AMQ 253

Query:   360 DSVSAL 365
             D+++ L
Sbjct:   254 DALAGL 259

GO:0005524 "ATP binding" evidence=IEA

GO:0006429 "leucyl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004823 "leucine-tRNA ligase activity" evidence=IEA

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|E1B768 LARS2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 621 (223.7 bits), Expect = 2.1e-60, P = 2.1e-60
 Identities = 113/186 (60%), Positives = 136/186 (73%)

Query:   180 EGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPA 239
             E  + +  FYVLSMFPYPSG LHMGHVRVYTISDT+AR+  M G  V  PMGWDAFGLPA
Sbjct:    76 EADKSKPKFYVLSMFPYPSGKLHMGHVRVYTISDTIARFQKMRGMQVINPMGWDAFGLPA 135

Query:   240 ENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHA 299
             ENAA +  + P  WT  NI  M+ QL   G  F+W+ E+ TC P YYKWTQ LF+ LY A
Sbjct:   136 ENAAIERNLHPESWTQSNIRHMRKQLDQLGLCFSWDREVTTCLPDYYKWTQYLFIKLYEA 195

Query:   300 GLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLV 359
             GL Y+KEA VNWDP+D TVLA+EQVDE G SWRSGA+VE++ L QWFI+TT  A   ++ 
Sbjct:   196 GLAYQKEALVNWDPVDQTVLANEQVDEHGCSWRSGAKVEQKYLRQWFIKTTAYAK--AMQ 253

Query:   360 DSVSAL 365
             D+++ L
Sbjct:   254 DALAGL 259

GO:0005739 "mitochondrion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006429 "leucyl-tRNA aminoacylation" evidence=IEA

GO:0004823 "leucine-tRNA ligase activity" evidence=IEA

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|Q15031 LARS2 "Probable leucine--tRNA ligase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 621 (223.7 bits), Expect = 2.1e-60, P = 2.1e-60
 Identities = 113/186 (60%), Positives = 137/186 (73%)

Query:   180 EGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPA 239
             E  + +  FYVLSMFPYPSG LHMGHVRVYTISDT+AR+  M G  V  PMGWDAFGLPA
Sbjct:    76 EADKSKPKFYVLSMFPYPSGKLHMGHVRVYTISDTIARFQKMRGMQVINPMGWDAFGLPA 135

Query:   240 ENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHA 299
             ENAA +  + P+ WT  NI  M+ QL   G  F+W+ E+ TC P YYKWTQ LF+ LY A
Sbjct:   136 ENAAVERNLHPQSWTQSNIKHMRKQLDRLGLCFSWDREITTCLPDYYKWTQYLFIKLYEA 195

Query:   300 GLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLV 359
             GL Y+KEA VNWDP+D TVLA+EQVDE G SWRSGA+VE++ L QWFI+TT  A   ++ 
Sbjct:   196 GLAYQKEALVNWDPVDQTVLANEQVDEHGCSWRSGAKVEQKYLRQWFIKTTAYAK--AMQ 253

Query:   360 DSVSAL 365
             D+++ L
Sbjct:   254 DALADL 259

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

GO:0006429 "leucyl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004823 "leucine-tRNA ligase activity" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0006418 "tRNA aminoacylation for protein translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

UNIPROTKB|E2RQR3 LARS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 620 (223.3 bits), Expect = 2.7e-60, P = 2.7e-60
 Identities = 113/186 (60%), Positives = 136/186 (73%)

Query:   180 EGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPA 239
             E  + +  FYVLSMFPYPSG LHMGHVRVYTISDT+AR+  M G  V  PMGWDAFGLPA
Sbjct:    76 EADKSKPKFYVLSMFPYPSGKLHMGHVRVYTISDTIARFQKMRGMQVINPMGWDAFGLPA 135

Query:   240 ENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHA 299
             ENAA +  + P  WT  NI  M+ QL   G  F+W+ E+ TC P YYKWTQ LF+ LY A
Sbjct:   136 ENAAIERNLHPESWTQSNIEHMRKQLDRLGLCFSWDREITTCLPDYYKWTQYLFIKLYEA 195

Query:   300 GLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLV 359
             GL Y+KEA VNWDP+D TVLA+EQVDE G SWRSGA+VE++ L QWFI+TT  A   ++ 
Sbjct:   196 GLAYQKEALVNWDPVDQTVLANEQVDEHGCSWRSGAKVEQKYLRQWFIKTTAYAK--AMQ 253

Query:   360 DSVSAL 365
             D+++ L
Sbjct:   254 DALADL 259

GO:0005739 "mitochondrion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006429 "leucyl-tRNA aminoacylation" evidence=IEA

GO:0004823 "leucine-tRNA ligase activity" evidence=IEA

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

MGI|MGI:2142973 Lars2 "leucyl-tRNA synthetase, mitochondrial" [Mus musculus (taxid:10090)]

 Score = 616 (221.9 bits), Expect = 7.7e-60, P = 7.7e-60
 Identities = 121/244 (49%), Positives = 157/244 (64%)

Query:   125 KSIVSSDPM-LRDRKKPVCGESLNQVL-KLVCDGVYRRRRSISSPSDFGVSSVGGTL-EG 181
             + +VS  P+ L +R  P C  S+     K   +   + R+ +       +      + E 
Sbjct:    17 RQLVSRPPVILWERLIPGCSRSIYSATGKWTKEYTLQTRKDVEKWWHQQIKEQASRVSEE 76

Query:   182 KRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAEN 241
              + +  FY+LSMFPYPSG LHMGHVRVYT+SDT+AR+  M G  V  PMGWDAFGLPAEN
Sbjct:    77 DKLKPKFYLLSMFPYPSGKLHMGHVRVYTLSDTIARFQKMRGMQVINPMGWDAFGLPAEN 136

Query:   242 AAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGL 301
             AA +  + P  WT  NI  M+ QL   G  F+W+ E+ TC P YYKWTQ LF+ LY AGL
Sbjct:   137 AAIERNLHPESWTQSNIKHMRKQLDRLGLCFSWDREITTCLPDYYKWTQYLFIKLYEAGL 196

Query:   302 VYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDS 361
              Y+KEA VNWDP+D TVLA+EQV+E G SWRSGA+VEK+ L QWFI+TT  A   ++ D+
Sbjct:   197 AYQKEALVNWDPVDQTVLANEQVNEYGCSWRSGAKVEKKYLRQWFIKTTAYAK--AMQDA 254

Query:   362 VSAL 365
             ++ L
Sbjct:   255 LADL 258

GO:0000166 "nucleotide binding" evidence=IEA

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0004823 "leucine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0006429 "leucyl-tRNA aminoacylation" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

RGD|1308429 Lars2 "leucyl-tRNA synthetase 2, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 612 (220.5 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 121/244 (49%), Positives = 157/244 (64%)

Query:   125 KSIVSSDPM-LRDRKKPVCGESLNQVL-KLVCDGVYRRRRSISSPSDFGVSSVGGTL-EG 181
             + +VS  P+ L +R  P C  S+     K   +   + R+ +       +      + E 
Sbjct:    17 RQLVSGLPVILWERIIPGCSRSIYSATGKWTKEYTLQTRKDVEKWWHQQIKVQASKISEE 76

Query:   182 KRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAEN 241
              + +  FY+LSMFPYPSG LHMGHVRVYT+SDT+AR+  M G  V  PMGWDAFGLPAEN
Sbjct:    77 DKLKPKFYLLSMFPYPSGKLHMGHVRVYTLSDTIARFQKMRGMQVINPMGWDAFGLPAEN 136

Query:   242 AAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGL 301
             AA +  + P  WT  NI  M+ QL   G  F+W+ E+ TC P YYKWTQ LF+ LY AGL
Sbjct:   137 AAIERNLHPESWTQSNIKHMRKQLDRLGLCFSWDREITTCLPDYYKWTQYLFIKLYEAGL 196

Query:   302 VYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDS 361
              Y+KEA VNWDP+D TVLA+EQV+E G SWRSGA+VEK+ L QWFI+TT  A   ++ D+
Sbjct:   197 AYQKEALVNWDPVDQTVLANEQVNEYGCSWRSGAKVEKKYLRQWFIKTTAYAK--AMQDA 254

Query:   362 VSAL 365
             ++ L
Sbjct:   255 LADL 258

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

GO:0004823 "leucine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0006429 "leucyl-tRNA aminoacylation" evidence=IEA

ASPGD|ASPL0000008770 AN6526 [Emericella nidulans (taxid:162425)]

 Score = 614 (221.2 bits), Expect = 3.0e-59, P = 3.0e-59
 Identities = 117/209 (55%), Positives = 146/209 (69%)

Query:   157 VYRRRRSISSPSDFGVSSVGGTLEGKRRED-NFYVLSMFPYPSGSLHMGHVRVYTISDTL 215
             ++++  SI +P    V  V  T  G   E    Y+LSMFPYPSG+LHMGH+RVYTISD L
Sbjct:    62 IWQKHGSIRAP----VGVVADTTAGAAGEKPKSYILSMFPYPSGTLHMGHLRVYTISDVL 117

Query:   216 ARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWE 275
             AR+Y M G +V  PMGWDAFGLPAENAA QHG+ P  WT  NIA MK QL+     FNWE
Sbjct:   118 ARFYRMRGHDVLHPMGWDAFGLPAENAAIQHGVSPAGWTTENIAKMKEQLRSISTSFNWE 177

Query:   276 SELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGA 335
              E ATC P++Y+ TQ +FL LY  GL Y+ +A VN+DP+D TVLA+EQVD  G SWRSGA
Sbjct:   178 REFATCSPEFYEHTQRIFLMLYEKGLAYQADAMVNYDPVDKTVLANEQVDANGCSWRSGA 237

Query:   336 RVEKRRLSQWFIRTTRLAN-LVSLVDSVS 363
             +VEK++L QWF R T   + L+  +DS++
Sbjct:   238 KVEKKKLRQWFFRITEFKDQLLGDLDSLA 266

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0004823 "leucine-tRNA ligase activity" evidence=IEA

GO:0032543 "mitochondrial translation" evidence=IEA

GO:0000372 "Group I intron splicing" evidence=IEA

GO:0006429 "leucyl-tRNA aminoacylation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3M3A3	SYL_ANAVT	6, ., 1, ., 1, ., 4	0.6385	0.4547	0.1903	yes	N/A
Q7VBZ5	SYL_PROMA	6, ., 1, ., 1, ., 4	0.5932	0.4849	0.2034	yes	N/A
Q2JHX0	SYL_SYNJB	6, ., 1, ., 1, ., 4	0.6271	0.4849	0.2006	yes	N/A
Q8VDC0	SYLM_MOUSE	6, ., 1, ., 1, ., 4	0.6228	0.4684	0.1895	yes	N/A
B7JYA9	SYL_CYAP8	6, ., 1, ., 1, ., 4	0.6506	0.4547	0.1939	yes	N/A
B0C1R1	SYL_ACAM1	6, ., 1, ., 1, ., 4	0.5810	0.4876	0.2081	yes	N/A
Q7NE01	SYL_GLOVI	6, ., 1, ., 1, ., 4	0.6190	0.4602	0.1983	yes	N/A
B2J7T9	SYL_NOSP7	6, ., 1, ., 1, ., 4	0.6445	0.4547	0.1905	yes	N/A
A7NCQ3	SYL_FRATF	6, ., 1, ., 1, ., 4	0.5988	0.4794	0.2152	yes	N/A
Q09828	SYLM_SCHPO	6, ., 1, ., 1, ., 4	0.5752	0.4931	0.2059	yes	N/A
A2C242	SYL_PROM1	6, ., 1, ., 1, ., 4	0.5934	0.4849	0.2053	yes	N/A
Q0BLI7	SYL_FRATO	6, ., 1, ., 1, ., 4	0.5988	0.4794	0.2152	yes	N/A
P11325	SYLM_YEAST	6, ., 1, ., 1, ., 4	0.6181	0.4520	0.1845	yes	N/A
Q5RDP4	SYLM_PONAB	6, ., 1, ., 1, ., 4	0.6342	0.4630	0.1871	yes	N/A
Q7V1I2	SYL_PROMP	6, ., 1, ., 1, ., 4	0.6271	0.4849	0.2062	yes	N/A
A2C9U0	SYL_PROM3	6, ., 1, ., 1, ., 4	0.5911	0.4904	0.2038	yes	N/A
A9BAE4	SYL_PROM4	6, ., 1, ., 1, ., 4	0.5608	0.5178	0.2167	yes	N/A
A5GT82	SYL_SYNR3	6, ., 1, ., 1, ., 4	0.6098	0.4931	0.2083	yes	N/A
B0U0E8	SYL_FRAP2	6, ., 1, ., 1, ., 4	0.6022	0.4767	0.2140	yes	N/A
A2BR45	SYL_PROMS	6, ., 1, ., 1, ., 4	0.6327	0.4849	0.2067	yes	N/A
Q2JV13	SYL_SYNJA	6, ., 1, ., 1, ., 4	0.6488	0.4602	0.1924	yes	N/A
A4IXU1	SYL_FRATW	6, ., 1, ., 1, ., 4	0.5988	0.4794	0.2152	yes	N/A
A7NFJ2	SYL_ROSCS	6, ., 1, ., 1, ., 4	0.5792	0.4904	0.1980	yes	N/A
B1WSK6	SYL_CYAA5	6, ., 1, ., 1, ., 4	0.6067	0.4849	0.2075	yes	N/A
Q8DH61	SYL_THEEB	6, ., 1, ., 1, ., 4	0.625	0.4602	0.1960	yes	N/A
Q7TV01	SYL_PROMM	6, ., 1, ., 1, ., 4	0.5856	0.4904	0.2038	yes	N/A
Q5NMK1	SYL_ZYMMO	6, ., 1, ., 1, ., 4	0.6545	0.4493	0.1938	yes	N/A
B7KCI7	SYL_CYAP7	6, ., 1, ., 1, ., 4	0.6069	0.4630	0.1978	yes	N/A
A1WYZ7	SYL_HALHL	6, ., 1, ., 1, ., 4	0.5978	0.4876	0.2178	yes	N/A
B8HM05	SYL_CYAP4	6, ., 1, ., 1, ., 4	0.6198	0.4684	0.1993	yes	N/A
A2BWL7	SYL_PROM5	6, ., 1, ., 1, ., 4	0.6347	0.4575	0.1932	yes	N/A
B1XP90	SYL_SYNP2	6, ., 1, ., 1, ., 4	0.6506	0.4547	0.1948	yes	N/A
Q5N006	SYL_SYNP6	6, ., 1, ., 1, ., 4	0.6071	0.4602	0.1942	yes	N/A
Q114V5	SYL_TRIEI	6, ., 1, ., 1, ., 4	0.6265	0.4547	0.1786	yes	N/A
Q7U6T1	SYL_SYNPX	6, ., 1, ., 1, ., 4	0.6011	0.4849	0.2065	yes	N/A
Q54ET5	SYLM_DICDI	6, ., 1, ., 1, ., 4	0.5515	0.5260	0.2042	yes	N/A
Q31LW9	SYL_SYNE7	6, ., 1, ., 1, ., 4	0.6130	0.4602	0.1942	yes	N/A
A3PCW8	SYL_PROM0	6, ., 1, ., 1, ., 4	0.6568	0.4630	0.1974	yes	N/A
B2SGM9	SYL_FRATM	6, ., 1, ., 1, ., 4	0.5988	0.4794	0.2152	yes	N/A
Q46L15	SYL_PROMT	6, ., 1, ., 1, ., 4	0.6176	0.4657	0.1972	yes	N/A
Q2A307	SYL_FRATH	6, ., 1, ., 1, ., 4	0.5988	0.4794	0.2152	yes	N/A
A0Q693	SYL_FRATN	6, ., 1, ., 1, ., 4	0.5851	0.5041	0.2263	yes	N/A
Q15031	SYLM_HUMAN	6, ., 1, ., 1, ., 4	0.6342	0.4630	0.1871	yes	N/A
A8G4T7	SYL_PROM2	6, ., 1, ., 1, ., 4	0.6271	0.4849	0.2067	yes	N/A
Q0ABN3	SYL_ALHEH	6, ., 1, ., 1, ., 4	0.6043	0.4931	0.2083	yes	N/A
Q31AX4	SYL_PROM9	6, ., 1, ., 1, ., 4	0.6384	0.4849	0.2067	yes	N/A
Q8YS09	SYL_NOSS1	6, ., 1, ., 1, ., 4	0.6385	0.4547	0.1903	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.1.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	365
PRK00390	805	PRK00390, leuS, leucyl-tRNA synthetase; Validated	1e-108
TIGR00396	842	TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba	7e-92
COG0495	814	COG0495, LeuS, Leucyl-tRNA synthetase [Translation	3e-88
cd00812	314	cd00812, LeuRS_core, catalytic core domain of leuc	2e-70
PLN02563	963	PLN02563, PLN02563, aminoacyl-tRNA ligase	4e-57
cd00817	382	cd00817, ValRS_core, catalytic core domain of valy	3e-44
PRK13208	800	PRK13208, valS, valyl-tRNA synthetase; Reviewed	7e-40
COG0525	877	COG0525, ValS, Valyl-tRNA synthetase [Translation,	8e-37
TIGR00422	861	TIGR00422, valS, valyl-tRNA synthetase	1e-30
cd00668	312	cd00668, Ile_Leu_Val_MetRS_core, catalytic core do	6e-28
pfam09334	388	pfam09334, tRNA-synt_1g, tRNA synthetases class I	5e-21
pfam00133	606	pfam00133, tRNA-synt_1, tRNA synthetases class I (	8e-21
COG0143	558	COG0143, MetG, Methionyl-tRNA synthetase [Translat	1e-20
cd00814	319	cd00814, MetRS_core, catalytic core domain of meth	1e-18
TIGR00398	530	TIGR00398, metG, methionyl-tRNA synthetase	6e-18
TIGR00392	861	TIGR00392, ileS, isoleucyl-tRNA synthetase	2e-16
PRK05729	874	PRK05729, valS, valyl-tRNA synthetase; Reviewed	1e-15
TIGR00395	938	TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch	1e-14
PRK12268	556	PRK12268, PRK12268, methionyl-tRNA synthetase; Rev	1e-14
PRK11893	511	PRK11893, PRK11893, methionyl-tRNA synthetase; Rev	3e-14
PRK00133	673	PRK00133, metG, methionyl-tRNA synthetase; Reviewe	2e-13
PRK12300	897	PRK12300, leuS, leucyl-tRNA synthetase; Reviewed	3e-13
cd00818	338	cd00818, IleRS_core, catalytic core domain of isol	9e-13
COG0060	933	COG0060, IleS, Isoleucyl-tRNA synthetase [Translat	4e-12
PLN02843	974	PLN02843, PLN02843, isoleucyl-tRNA synthetase	8e-12
PTZ00419	995	PTZ00419, PTZ00419, valyl-tRNA synthetase-like pro	2e-11
PRK06039	975	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewe	6e-11
PRK14900	1052	PRK14900, valS, valyl-tRNA synthetase; Provisional	6e-11
PLN02943	958	PLN02943, PLN02943, aminoacyl-tRNA ligase	6e-11
PLN02381	1066	PLN02381, PLN02381, valyl-tRNA synthetase	9e-11
PRK12267	648	PRK12267, PRK12267, methionyl-tRNA synthetase; Rev	5e-10
PLN02882	1159	PLN02882, PLN02882, aminoacyl-tRNA ligase	6e-07
PRK13804	961	PRK13804, ileS, isoleucyl-tRNA synthetase; Provisi	5e-06
PRK05743	912	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewe	3e-05
PTZ00427	1205	PTZ00427, PTZ00427, isoleucine-tRNA ligase, putati	4e-04
cd00802	143	cd00802, class_I_aaRS_core, catalytic core domain	0.002

>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated

 Score =  334 bits (860), Expect = e-108
 Identities = 104/166 (62%), Positives = 120/166 (72%), Gaps = 1/166 (0%)

Query: 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAH 244
              +YVL MFPYPSG LHMGHVR YTI D +ARY  M G NV  PMGWDAFGLPAENAA 
Sbjct: 31  SKKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAI 90

Query: 245 QHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 304
           + G  P EWT  NIA MK QL+  G  ++W  E+ATCDP+YYKWTQ +FL LY  GL YR
Sbjct: 91  KTGTHPAEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYR 150

Query: 305 KEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTT 350
           KE+ VNW P+D TVLA+EQV + G  WR GA VEK+ L QWF++ T
Sbjct: 151 KESPVNWCPVDGTVLANEQVID-GRCWRCGAPVEKKELRQWFLKIT 195

Length = 805

>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family

 Score =  292 bits (749), Expect = 7e-92
 Identities = 105/166 (63%), Positives = 125/166 (75%)

Query: 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHG 247
           +Y+LSMFPYPSG+LHMGHVR YTI+D L+RYY M G NV  P+GWDAFGLPAENAA + G
Sbjct: 31  YYILSMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPIGWDAFGLPAENAAIKRG 90

Query: 248 IDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEA 307
           I P +WT  NIA MK QLQ  G  ++W+ E+ATCDP+YYKWTQ +FL+L+  GL Y KEA
Sbjct: 91  IHPAKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEA 150

Query: 308 TVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLA 353
            VNW P D TVLA+EQVD  G SWR    VEK+ L QWF++ T  A
Sbjct: 151 DVNWCPNDGTVLANEQVDSDGRSWRGDTPVEKKELKQWFLKITAYA 196

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches [Protein synthesis, tRNA aminoacylation]. Length = 842

>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score =  282 bits (724), Expect = 3e-88
 Identities = 103/171 (60%), Positives = 119/171 (69%), Gaps = 1/171 (0%)

Query: 180 EGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPA 239
           E   + + FYVL MFPYPSG+LH+GHVR YTI D +ARY  M G NV  PMGWDAFGLPA
Sbjct: 28  EDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPA 87

Query: 240 ENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHA 299
           ENAA + G DP +WT  NIA MK QL+  G   +W  E ATCDP+YYKW Q  FL LY  
Sbjct: 88  ENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEK 147

Query: 300 GLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTT 350
           GL YRKEA VNW P+D TVLA+EQV + G  WR G  VE + L+QWF + T
Sbjct: 148 GLAYRKEAPVNWCPVDGTVLANEQVID-GGCWRCGEPVEIKELTQWFFKIT 197

Length = 814

>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases

 Score =  222 bits (568), Expect = 2e-70
 Identities = 78/125 (62%), Positives = 91/125 (72%)

Query: 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHG 247
           FY+L MFPYPSG+LH+GHVR YTI D +ARY  M G NV  PMG+DAFGLPAENAA + G
Sbjct: 2   FYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIG 61

Query: 248 IDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEA 307
            DP +WT  NI  MK QL+  G  ++W  E  TCDP+YYK+TQ LFL LY  GL Y+KEA
Sbjct: 62  RDPEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEA 121

Query: 308 TVNWD 312
            VNW 
Sbjct: 122 PVNWC 126

Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314

>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase

 Score =  199 bits (508), Expect = 4e-57
 Identities = 85/168 (50%), Positives = 112/168 (66%), Gaps = 2/168 (1%)

Query: 188 FYVLSMFPYPSGS-LHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH 246
           FYVL MFPYPSG+ LH+GH   YT +D LARY  M G NV  PMGWDAFGLPAE  A + 
Sbjct: 112 FYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIET 171

Query: 247 GIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE 306
           G  P+  T+ NIA  +SQL+  G  ++W+ E++T +P+YYKWTQ +FL L   GL Y+ E
Sbjct: 172 GTHPKITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAE 231

Query: 307 ATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLAN 354
             VNW P   TVLA+E+V + G+S R G  V ++ + QW ++ T  A+
Sbjct: 232 VPVNWCPALGTVLANEEVVD-GLSERGGHPVIRKPMRQWMLKITAYAD 278

Length = 963

>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases

 Score =  156 bits (396), Expect = 3e-44
 Identities = 57/175 (32%), Positives = 77/175 (44%), Gaps = 21/175 (12%)

Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAEN---------AAHQ 245
           P  +GSLHMGH    TI D +ARY  M G NV  P G D  G+  +             +
Sbjct: 10  PNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTR 69

Query: 246 HGIDPR-------EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYH 298
           H +          EW   +   ++ QL+  G   +W  E  T DP   +  Q  F+ LY 
Sbjct: 70  HDLGREEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYE 129

Query: 299 AGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLA 353
            GL+YR    VNW P   T ++D +V       RSG  +E     QWF++   LA
Sbjct: 130 KGLIYRDNRLVNWCPKLRTAISDIEV-----CSRSGDVIEPLLKPQWFVKVKDLA 179

Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 382

>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed

 Score =  149 bits (380), Expect = 7e-40
 Identities = 57/143 (39%), Positives = 70/143 (48%), Gaps = 19/143 (13%)

Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLP----AENAAHQHGI-- 248
           P  SGSLH+GHV  YT +D +ARY  M G NVF P GWD  GLP     E     +GI  
Sbjct: 47  PTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEK---YYGIRK 103

Query: 249 DP----------REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYH 298
           D           RE T  +    +   +  G   +W  E  T  P+Y + +Q  FLDLY 
Sbjct: 104 DDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYK 163

Query: 299 AGLVYRKEATVNWDPIDNTVLAD 321
            GL+YR EA V W P   T +A 
Sbjct: 164 KGLIYRAEAPVLWCPRCETAIAQ 186

Length = 800

>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score =  141 bits (357), Expect = 8e-37
 Identities = 53/156 (33%), Positives = 71/156 (45%), Gaps = 19/156 (12%)

Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENA-----------A 243
           P  +GSLHMGH   YT+ D LARY  M G NV  P G D  G+  +              
Sbjct: 42  PNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITR 101

Query: 244 HQHGIDP-----REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYH 298
           H  G +       EW   +  T++ QL+  G   +W  E  T DP   +  Q  F+ LY 
Sbjct: 102 HDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYE 161

Query: 299 AGLVYRKEATVNWDPIDNTVLAD---EQVDEQGISW 331
            GL+YR E  VNW P   T ++D   E  + +G  +
Sbjct: 162 KGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGKLY 197

Length = 877

>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase

 Score =  123 bits (310), Expect = 1e-30
 Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 16/147 (10%)

Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAH-QHGID---- 249
           P  +GSLH+GH   ++I D +ARY  M G NV    G D  G+  +     + G +    
Sbjct: 42  PNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTK 101

Query: 250 ---PRE--------WTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYH 298
               RE        W   +  T+K+Q++  G   +W  E  T D    K  +  F+ LY 
Sbjct: 102 HDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYE 161

Query: 299 AGLVYRKEATVNWDPIDNTVLADEQVD 325
            GL+YR E  VNWDP  NT ++D +V+
Sbjct: 162 KGLIYRGEYLVNWDPKLNTAISDIEVE 188

The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase [Protein synthesis, tRNA aminoacylation]. Length = 861

>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases

 Score =  110 bits (278), Expect = 6e-28
 Identities = 47/135 (34%), Positives = 64/135 (47%), Gaps = 13/135 (9%)

Query: 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHG 247
           FYV +  PY +GSLH+GH   + I+D +ARY  M G  V    GWD  GLP E  A + G
Sbjct: 2   FYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKG 61

Query: 248 I-------------DPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFL 294
                         DP+E+        K   +  G  ++W  E  T +P+Y K  + +F 
Sbjct: 62  GRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFS 121

Query: 295 DLYHAGLVYRKEATV 309
            LY  GL+YR    V
Sbjct: 122 RLYEKGLIYRGTHPV 136

Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312

>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M)

 Score = 93.1 bits (232), Expect = 5e-21
 Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 2/138 (1%)

Query: 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHG 247
           F + +  PY +G  H+GH+     +D  ARY  + G +V    G D  G   E AA + G
Sbjct: 1   FLITTALPYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEKEG 60

Query: 248 IDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEA 307
           + P+E         K   + F   F+      T   ++ +  Q  FL LY  G +Y  E 
Sbjct: 61  VTPQELVDRYHEEFKELFKKFNISFDDFIR--TTSERHKELVQEFFLKLYEKGDIYEGEY 118

Query: 308 TVNWDPIDNTVLADEQVD 325
              +   D   L D  V+
Sbjct: 119 EGWYCVSDERFLPDRYVE 136

This family includes methionyl tRNA synthetases. Length = 388

>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V)

 Score = 93.6 bits (233), Expect = 8e-21
 Identities = 51/158 (32%), Positives = 74/158 (46%), Gaps = 22/158 (13%)

Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNV-FQPMGWDAFGLPAE------------N 241
           P  +G LH+GH    T+ D + RY  M G +V + P GWD  GLP E             
Sbjct: 32  PNATGLLHIGHALNKTLKDIVIRYKRMQGFDVLWVP-GWDHHGLPTEQKVEKKLGIKGKK 90

Query: 242 AAHQHGIDP-----REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDL 296
             H+ G +      REW +     ++SQ +  G   +W+ E  T DP        +F+ L
Sbjct: 91  DRHKLGREKFREKCREWKMEYADEIRSQFKRLGVSGDWDREYFTLDPGLEAAVWRVFVRL 150

Query: 297 YHAGLVYRKEATVNWDPIDNTVLADEQV---DEQGISW 331
           +  GL+YR +  VNW P  NT L++ +V   D +G S 
Sbjct: 151 HDKGLIYRGKKPVNWSPALNTALSEAEVEYKDVKGPSI 188

Other tRNA synthetase sub-families are too dissimilar to be included. Length = 606

>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score = 93.1 bits (232), Expect = 1e-20
 Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 2/138 (1%)

Query: 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH 246
              V +  PYP+G  H+GH+  Y  +D  ARY  + G  VF   G D  G   E  A + 
Sbjct: 6   KILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKE 65

Query: 247 GIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE 306
           GI P+E    N    K   +     F  ++ + T  P++ +  Q  FL LY  G +Y +E
Sbjct: 66  GITPQELVDKNHEEFKELFKALNISF--DNFIRTTSPEHKELVQEFFLKLYENGDIYLRE 123

Query: 307 ATVNWDPIDNTVLADEQV 324
               +       L D  V
Sbjct: 124 YEGLYCVSCERFLPDRYV 141

Length = 558

>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases

 Score = 84.9 bits (211), Expect = 1e-18
 Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH 246
              + +  PY +G  H+GH+    ++D  ARY  + G +V    G D  G   E  A + 
Sbjct: 1   KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEE 60

Query: 247 GIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE 306
           G+ P+E         K   +     F++     T  P++ +  Q  F  LY  G +Y  E
Sbjct: 61  GVTPQELCDKYHEIFKDLFKWLNISFDYFIR--TTSPRHKEIVQEFFKKLYENGYIYEGE 118

Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. Length = 319

>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase

 Score = 84.7 bits (210), Expect = 6e-18
 Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 2/139 (1%)

Query: 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHG 247
             + +  PY +G  H+GH     ++D  ARY  + G  V    G D  G   E  A Q G
Sbjct: 1   ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEG 60

Query: 248 IDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEA 307
           + P+E         K   +     F  +  + T D ++ +  Q +F  L   G +Y KE 
Sbjct: 61  LTPKELVDKYHEEFKDDWKWLNISF--DRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEI 118

Query: 308 TVNWDPIDNTVLADEQVDE 326
              + P     L D  V+ 
Sbjct: 119 KQLYCPECEMFLPDRYVEG 137

The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to This model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (small) subunit; this model does not include the C-terminal region corresponding to the beta chain [Protein synthesis, tRNA aminoacylation]. Length = 530

>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 19/166 (11%)

Query: 182 KRREDN--FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPA 239
           K  +    F      PY +GS+H+GH     + D + RY  M G NV +  GWD  GLP 
Sbjct: 30  KLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPI 89

Query: 240 ENAAHQ----HGIDP-------------REWTVGNIATMKSQLQGFGCKFNWESELATCD 282
           E+   +     G                RE+ +  I   + Q Q  G   +WE+   T D
Sbjct: 90  EHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMD 149

Query: 283 PKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQG 328
           P Y +    LF + +  GL+YR    V W P   T LA+ +V+ + 
Sbjct: 150 PSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKE 195

The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms [Protein synthesis, tRNA aminoacylation]. Length = 861

>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed

 Score = 77.8 bits (193), Expect = 1e-15
 Identities = 52/159 (32%), Positives = 66/159 (41%), Gaps = 39/159 (24%)

Query: 199 GSLHMGHVRVYTISDTLARYYAMNGKNV-FQPMGWDAFG----------LPAENAAHQHG 247
           GSLHMGH    T+ D L RY  M G N  + P G D  G          L AE      G
Sbjct: 49  GSLHMGHALNNTLQDILIRYKRMQGYNTLWLP-GTDHAGIATQMVVERQLAAE------G 101

Query: 248 IDPR------------EWTV---GNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQAL 292
                           EW     G I    +QL+  G   +W  E  T D    K  + +
Sbjct: 102 KSRHDLGREKFLEKVWEWKEESGGTI---TNQLRRLGASCDWSRERFTMDEGLSKAVREV 158

Query: 293 FLDLYHAGLVYRKEATVNWDPIDNTVLADEQV---DEQG 328
           F+ LY  GL+YR +  VNWDP   T L+D +V   + +G
Sbjct: 159 FVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKEVKG 197

Length = 874

>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family

 Score = 75.2 bits (185), Expect = 1e-14
 Identities = 41/161 (25%), Positives = 63/161 (39%), Gaps = 24/161 (14%)

Query: 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLP------ 238
            + F++   +PY +G +H GH R +TI +  AR+  M GKNV  P+G+   G P      
Sbjct: 24  REKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAE 83

Query: 239 ---------AENAAHQHGI---------DPREWTVGNIATMKSQLQGFGCKFNWESELAT 280
                     +N    H I         DP           +S  +  G   +W     T
Sbjct: 84  LIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKT 143

Query: 281 CDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLAD 321
            DP Y ++ +     L   GL+ + E  V + P D   + D
Sbjct: 144 TDPYYDRFIEWQMNKLKELGLIVKGEHPVRYCPKDGNPVED 184

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS [Protein synthesis, tRNA aminoacylation]. Length = 938

>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed

 Score = 74.9 bits (185), Expect = 1e-14
 Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 3/139 (2%)

Query: 187 NFYVLSMFPYPSGSLHMGHVRVYTI-SDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ 245
              + S +PY +G LH+GH+    + +D  ARY  + G  V    G D  G P E AA +
Sbjct: 4   RILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKK 63

Query: 246 HGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK 305
            G+ P+E         K   +  G  ++  +   T  P +++  Q  FL LY  G +Y+K
Sbjct: 64  EGVTPQELADKYHEEHKEDFKKLGISYDLFTR--TTSPNHHEVVQEFFLKLYENGYIYKK 121

Query: 306 EATVNWDPIDNTVLADEQV 324
                + P D   L D  V
Sbjct: 122 TIEQAYCPSDGRFLPDRYV 140

Length = 556

>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed

 Score = 73.0 bits (180), Expect = 3e-14
 Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 4/121 (3%)

Query: 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH 246
            FY+ +   YP+G  H+GH      +D LAR+  + G +VF   G D  G   +  A + 
Sbjct: 2   KFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEA 61

Query: 247 GIDPREWTVGNIATMKSQLQGFGCKF-NWESELATCDPKYYKWTQALFLDLYHAGLVYRK 305
           GI P+E    N A  K   +     + ++   + T DP++ +  Q +F  L   G +Y  
Sbjct: 62  GISPQELADRNSAAFKRLWEALNISYDDF---IRTTDPRHKEAVQEIFQRLLANGDIYLG 118

Query: 306 E 306
           +
Sbjct: 119 K 119

Length = 511

>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed

 Score = 71.3 bits (176), Expect = 2e-13
 Identities = 40/129 (31%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWT 254
           PY +G +H+GH+  Y  +D   RY  M G  V      DA G P    A + GI P E  
Sbjct: 11  PYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEE-L 69

Query: 255 VGNIATM-KSQLQGFGCKF-NWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWD 312
           +       K    GFG  F N+ S   T   +  +  Q ++L L   G +Y K     +D
Sbjct: 70  IARYHAEHKRDFAGFGISFDNYGS---THSEENRELAQEIYLKLKENGYIYEKTIEQLYD 126

Query: 313 PIDNTVLAD 321
           P     L D
Sbjct: 127 PEKGMFLPD 135

Length = 673

>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed

 Score = 71.1 bits (175), Expect = 3e-13
 Identities = 45/145 (31%), Positives = 59/145 (40%), Gaps = 24/145 (16%)

Query: 201 LHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLP----AENAAHQ----------- 245
           LH+GH R YTI D +ARY  M G NV  PM +   G P    AE  A             
Sbjct: 1   LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSL 60

Query: 246 HGI---------DPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDL 296
           +GI         DP           K  ++  G   +W  E  T DP+Y K+ +  F  L
Sbjct: 61  YGIPEEELEKFKDPEYIVEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKL 120

Query: 297 YHAGLVYRKEATVNWDPIDNTVLAD 321
              GL+ +    V + P DN  + D
Sbjct: 121 KEKGLIVKGSHPVRYCPNDNNPVGD 145

Length = 897

>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases

 Score = 68.0 bits (167), Expect = 9e-13
 Identities = 48/175 (27%), Positives = 66/175 (37%), Gaps = 41/175 (23%)

Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH-------- 246
           PY +G  H GH     + D + RY  M G  V +  GWD  GLP E    +         
Sbjct: 10  PYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKD 69

Query: 247 ----GIDP-----REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLY 297
               GI       RE+ +  +   + Q Q  G   +WE+   T DP+Y +    +F  L+
Sbjct: 70  IEKMGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLH 129

Query: 298 HAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRL 352
             GL+YR    V W  I                         R   QWFIR T++
Sbjct: 130 EKGLLYRGYKVVPWPLI------------------------YRATPQWFIRVTKI 160

Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 338

>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score = 67.2 bits (165), Expect = 4e-12
 Identities = 49/160 (30%), Positives = 69/160 (43%), Gaps = 29/160 (18%)

Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNV-FQPMGWDAFGLPAENAAHQ-HGIDP-- 250
           PY +G++H+GH     + D + RY  M G +V + P GWD  GLP E    +  GI    
Sbjct: 58  PYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVP-GWDCHGLPIELKVEKKLGIGKKD 116

Query: 251 -------------REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQA----LF 293
                        RE+ +  +   K Q +  G   +WE+   T DP Y    +      F
Sbjct: 117 IESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSY----EESVWWAF 172

Query: 294 LDLYHAGLVYRKEATVNWDPIDNTVLAD---EQVDEQGIS 330
            +LY  GL+YR    V W P   T LA+   E  D +  S
Sbjct: 173 KELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPS 212

Length = 933

>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase

 Score = 66.3 bits (162), Expect = 8e-12
 Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 14/141 (9%)

Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAE-------NAAHQHG 247
           PY +G LH+GH     + D + RY  + GK V    GWD  GLP E       +   +  
Sbjct: 41  PYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKE 100

Query: 248 IDP-------REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAG 300
           + P        ++    + T +   + +G   +WE+   T DP+Y      +F  ++  G
Sbjct: 101 LTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNG 160

Query: 301 LVYRKEATVNWDPIDNTVLAD 321
            +YR    V+W P   T LA+
Sbjct: 161 YIYRGRKPVHWSPSSRTALAE 181

Length = 974

>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein; Provisional

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 19/162 (11%)

Query: 182 KRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFG----- 236
                 F ++   P  +G LH+GH     I D+L RY+ M G       G D  G     
Sbjct: 56  LNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQV 115

Query: 237 -----LPAENAAHQHGIDPRE--------WTVGNIATMKSQLQGFGCKFNWESELATCDP 283
                L  E    +H +  RE        W   +   + +QL+  G   +W  E+ T D 
Sbjct: 116 VVEKKLMKEENKTRHDLG-REEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDE 174

Query: 284 KYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD 325
           +  K  +  F+ LY  GL+YR    VNW     T ++D +V+
Sbjct: 175 QRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVE 216

Length = 995

>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed

 Score = 63.6 bits (156), Expect = 6e-11
 Identities = 38/146 (26%), Positives = 57/146 (39%), Gaps = 21/146 (14%)

Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH-------- 246
           P  +G  H GH+   TI D + RY  M G  V +  GWD  GLP E    +         
Sbjct: 50  PTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKD 109

Query: 247 ----GIDP-----REWTVGNIATMKSQLQGFGCKFNWESELATCDPKY--YKWTQALFLD 295
               GI+      RE  +      +   +  G   ++++   T D +Y    W       
Sbjct: 110 IEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVW--WALKQ 167

Query: 296 LYHAGLVYRKEATVNWDPIDNTVLAD 321
           LY  GL+Y+    V + P   T L++
Sbjct: 168 LYDKGLLYKGYRVVPYCPRCETPLSN 193

Length = 975

>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional

 Score = 63.5 bits (154), Expect = 6e-11
 Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 17/150 (11%)

Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAE------------NA 242
           P  +GSLH+GH    T+ D L R+  M+G N     G D  G+  +             +
Sbjct: 57  PNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKS 116

Query: 243 AHQHGIDP-----REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLY 297
            H  G +        W     + +  Q +  G   +W+ E  T D    +  + +F+ L+
Sbjct: 117 RHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLH 176

Query: 298 HAGLVYRKEATVNWDPIDNTVLADEQVDEQ 327
             GL+YR++  +NW P   T L+D +V+ +
Sbjct: 177 EEGLIYREKKLINWCPDCRTALSDLEVEHE 206

Length = 1052

>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase

 Score = 63.4 bits (154), Expect = 6e-11
 Identities = 45/155 (29%), Positives = 66/155 (42%), Gaps = 19/155 (12%)

Query: 189 YVLSMFPYP--SGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFG----LPAENA 242
           +V+ M P P  +GSLHMGH    T+ D + RY  M G+      G D  G    L  E  
Sbjct: 90  FVIPM-PPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKM 148

Query: 243 AHQHGIDPR------------EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQ 290
               GI               EW      T+ +Q++  G   +W  E  T D +  +   
Sbjct: 149 LASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVV 208

Query: 291 ALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD 325
             F+ L+  GL+Y+    VNW P   T ++D +V+
Sbjct: 209 EAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE 243

Length = 958

>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase

 Score = 63.0 bits (153), Expect = 9e-11
 Identities = 48/153 (31%), Positives = 67/153 (43%), Gaps = 21/153 (13%)

Query: 193 MFPYP--SGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFG----------LPAE 240
           + P P  +G+LH+GH     I DT+ R+  M+G N     G D  G          L  E
Sbjct: 133 VLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRE 192

Query: 241 NAAHQHGIDPREWTVGNI--------ATMKSQLQGFGCKFNWESELATCDPKYYKWTQAL 292
               +H I  RE  V  +         T+ +QL+  G   +W  E  T D +  K     
Sbjct: 193 RHLTRHDIG-REEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEA 251

Query: 293 FLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD 325
           F+ LY  GL+YR    VNWD    T ++D +VD
Sbjct: 252 FVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVD 284

Length = 1066

>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed

 Score = 60.6 bits (148), Expect = 5e-10
 Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 12/127 (9%)

Query: 185 EDNFYVLSMFPYPSGSLHMGHVRVYT--ISDTLARYYAMNGKNVFQPMGWDAFGLPAENA 242
           +  FY+ +   YP+G  H+GH   YT   +D LARY  + G +VF   G D  G   + A
Sbjct: 3   KKTFYITTPIYYPNGKPHIGHA--YTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQA 60

Query: 243 AHQHGIDPREWTVGNIATMKSQLQGFGC---KFNWESELATCDPKYYKWTQALFLDLYHA 299
           A + G  P+E+     A  K   +       KF     + T D ++ K  Q +F  LY  
Sbjct: 61  AEKAGKTPQEYVDEISAGFKELWKKLDISYDKF-----IRTTDERHKKVVQKIFEKLYEQ 115

Query: 300 GLVYRKE 306
           G +Y+ E
Sbjct: 116 GDIYKGE 122

Length = 648

>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase

 Score = 51.3 bits (123), Expect = 6e-07
 Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 17/127 (13%)

Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH-------- 246
           P+ +G  H GH+   TI D + RY +M G +V +  GWD  GLP E    +         
Sbjct: 47  PFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDD 106

Query: 247 ----GIDPREWTVGNIATMKSQ-----LQGFGCKFNWESELATCDPKYYKWTQALFLDLY 297
               GID       +I T  S+     +   G   ++E++  T DPK+ +    +F  L+
Sbjct: 107 VLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLF 166

Query: 298 HAGLVYR 304
             GLVY+
Sbjct: 167 EKGLVYK 173

Length = 1159

>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional

 Score = 48.0 bits (115), Expect = 5e-06
 Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 23/168 (13%)

Query: 179 LEGKRREDN----FYVL-SMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNV-FQPMGW 232
           L  K RE       +VL    PY +G++H+GH     + D + R   M G +  + P GW
Sbjct: 42  LYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVP-GW 100

Query: 233 DAFGLPAENAAHQHGIDP----------------REWTVGNIATMKSQLQGFGCKFNWES 276
           D  GLP E    +                     RE+ +  I   + + +  G   +W++
Sbjct: 101 DCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDN 160

Query: 277 ELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQV 324
              T D          F      G +YR    V W  ++ T LA+ ++
Sbjct: 161 PYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEI 208

Length = 961

>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed

 Score = 45.5 bits (109), Expect = 3e-05
 Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 25/146 (17%)

Query: 195 PYPSGSLHMGHVRVYTIS-DTLARYYAMNGKNV-FQPMGWDAFGLPAENAAHQ------H 246
           PY +G +H+GH  +  I  D + +   M+G +  + P GWD  GLP E    +       
Sbjct: 58  PYANGDIHIGHA-LNKILKDIIVKSKTMSGFDAPYVP-GWDCHGLPIELKVEKKLGKKGK 115

Query: 247 GIDP-------REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQA----LFLD 295
            +         RE+ +  +   +   +  G   +W++   T D KY    +A        
Sbjct: 116 KLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKY----EANIIRALGK 171

Query: 296 LYHAGLVYRKEATVNWDPIDNTVLAD 321
           +   G +Y+    V W P   + LA+
Sbjct: 172 MAKKGYLYKGLKPVYWCPDCGSALAE 197

Length = 912

>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 17/127 (13%)

Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH-------- 246
           P+ +G  H GH+    I D + RY+   G +V +  GWD  GLP E    +         
Sbjct: 111 PFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKED 170

Query: 247 ----GIDPREWTVGNIATMKSQ-----LQGFGCKFNWESELATCDPKYYKWTQALFLDLY 297
               GID        I    S      ++  G   +++++  T D  + +    +F +LY
Sbjct: 171 ILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELY 230

Query: 298 HAGLVYR 304
               VY+
Sbjct: 231 KNNYVYK 237

Length = 1205

>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 19/71 (26%), Positives = 31/71 (43%)

Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWT 254
             P+G LH+GH+R     D LA+ Y   G  V      D  G    + A++ G + + + 
Sbjct: 6   ITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFV 65

Query: 255 VGNIATMKSQL 265
              I  +K  +
Sbjct: 66  ERWIERIKEDV 76

Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 143

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	365
COG0143	558	MetG Methionyl-tRNA synthetase [Translation, ribos	100.0
TIGR00396	842	leuS_bact leucyl-tRNA synthetase, eubacterial and	100.0
PLN02610	801	probable methionyl-tRNA synthetase	100.0
cd00817	382	ValRS_core catalytic core domain of valyl-tRNA syn	100.0
PLN02563	963	aminoacyl-tRNA ligase	100.0
PLN02224	616	methionine-tRNA ligase	100.0
PF09334	391	tRNA-synt_1g: tRNA synthetases class I (M); InterP	100.0
PRK00390	805	leuS leucyl-tRNA synthetase; Validated	100.0
PRK12267	648	methionyl-tRNA synthetase; Reviewed	100.0
COG0495	814	LeuS Leucyl-tRNA synthetase [Translation, ribosoma	100.0
PRK00133	673	metG methionyl-tRNA synthetase; Reviewed	100.0
PRK12268	556	methionyl-tRNA synthetase; Reviewed	100.0
PRK11893	511	methionyl-tRNA synthetase; Reviewed	100.0
PRK13208	800	valS valyl-tRNA synthetase; Reviewed	100.0
TIGR00398	530	metG methionyl-tRNA synthetase. The methionyl-tRNA	100.0
cd00814	319	MetRS_core catalytic core domain of methioninyl-tR	100.0
KOG0435|consensus	876		100.0
TIGR00422	861	valS valyl-tRNA synthetase. The valyl-tRNA synthet	100.0
PRK05729	874	valS valyl-tRNA synthetase; Reviewed	100.0
COG0525	877	ValS Valyl-tRNA synthetase [Translation, ribosomal	100.0
PRK14900	1052	valS valyl-tRNA synthetase; Provisional	100.0
KOG0436|consensus	578		100.0
PLN02943	958	aminoacyl-tRNA ligase	100.0
cd00818	338	IleRS_core catalytic core domain of isoleucyl-tRNA	100.0
cd00812	314	LeuRS_core catalytic core domain of leucyl-tRNA sy	100.0
PRK06039	975	ileS isoleucyl-tRNA synthetase; Reviewed	99.97
TIGR00392	861	ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA	99.97
PRK05743	912	ileS isoleucyl-tRNA synthetase; Reviewed	99.97
PRK13804	961	ileS isoleucyl-tRNA synthetase; Provisional	99.97
PLN02381	1066	valyl-tRNA synthetase	99.97
PF00133	601	tRNA-synt_1: tRNA synthetases class I (I, L, M and	99.97
cd00668	312	Ile_Leu_Val_MetRS_core catalytic core domain of is	99.97
PTZ00419	995	valyl-tRNA synthetase-like protein; Provisional	99.97
PLN02843	974	isoleucyl-tRNA synthetase	99.97
PLN02882	1159	aminoacyl-tRNA ligase	99.97
TIGR00395	938	leuS_arch leucyl-tRNA synthetase, archaeal and cyt	99.97
PTZ00427	1205	isoleucine-tRNA ligase, putative; Provisional	99.97
COG0060	933	IleS Isoleucyl-tRNA synthetase [Translation, ribos	99.96
PLN02959	1084	aminoacyl-tRNA ligase	99.96
PRK01611	507	argS arginyl-tRNA synthetase; Reviewed	99.95
KOG0432|consensus	995		99.93
COG0018	577	ArgS Arginyl-tRNA synthetase [Translation, ribosom	99.93
cd00671	212	ArgRS_core catalytic core domain of arginyl-tRNA s	99.92
PRK12300	897	leuS leucyl-tRNA synthetase; Reviewed	99.91
KOG1247|consensus	567		99.91
PRK12451	562	arginyl-tRNA synthetase; Reviewed	99.89
PLN02286	576	arginine-tRNA ligase	99.89
TIGR00456	566	argS arginyl-tRNA synthetase. This model recognize	99.88
PRK00260	463	cysS cysteinyl-tRNA synthetase; Validated	99.88
TIGR00435	465	cysS cysteinyl-tRNA synthetase. This model finds t	99.87
KOG0433|consensus	937		99.87
PRK12418	384	cysteinyl-tRNA synthetase; Provisional	99.86
TIGR03447	411	mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-	99.85
PLN02946	557	cysteine-tRNA ligase	99.85
PRK14536	490	cysS cysteinyl-tRNA synthetase; Provisional	99.83
PRK14535	699	cysS cysteinyl-tRNA synthetase; Provisional	99.83
KOG0434|consensus	1070		99.82
PF00750	354	tRNA-synt_1d: tRNA synthetases class I (R); InterP	99.8
PRK14534	481	cysS cysteinyl-tRNA synthetase; Provisional	99.8
PTZ00399	651	cysteinyl-tRNA-synthetase; Provisional	99.8
cd00672	213	CysRS_core catalytic core domain of cysteinyl tRNA	99.79
KOG0435|consensus	876		99.78
PRK04156	567	gltX glutamyl-tRNA synthetase; Provisional	99.76
cd00674	353	LysRS_core_class_I catalytic core domain of class	99.73
PF01406	300	tRNA-synt_1e: tRNA synthetases class I (C) catalyt	99.72
TIGR00463	560	gltX_arch glutamyl-tRNA synthetase, archaeal and e	99.65
cd00802	143	class_I_aaRS_core catalytic core domain of class I	99.64
COG0215	464	CysS Cysteinyl-tRNA synthetase [Translation, ribos	99.62
KOG0437|consensus	1080		99.62
KOG4426|consensus	656		99.52
PRK00750	510	lysK lysyl-tRNA synthetase; Reviewed	99.51
PLN02563	963	aminoacyl-tRNA ligase	99.5
COG0495	814	LeuS Leucyl-tRNA synthetase [Translation, ribosoma	99.5
TIGR00396	842	leuS_bact leucyl-tRNA synthetase, eubacterial and	99.43
PF13603	185	tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; P	99.38
TIGR00467	515	lysS_arch lysyl-tRNA synthetase, archaeal and spir	99.36
KOG2007|consensus	586		99.35
cd09287	240	GluRS_non_core catalytic core domain of non-discri	99.27
TIGR03838	272	queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe	99.27
PLN03233	523	putative glutamate-tRNA ligase; Provisional	99.25
PRK00390	805	leuS leucyl-tRNA synthetase; Validated	99.24
COG0008	472	GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr	99.24
PTZ00402	601	glutamyl-tRNA synthetase; Provisional	99.22
PRK12558	445	glutamyl-tRNA synthetase; Provisional	99.22
PF00749	314	tRNA-synt_1c: tRNA synthetases class I (E and Q),	99.22
cd00807	238	GlnRS_core catalytic core domain of glutaminyl-tRN	99.21
PTZ00437	574	glutaminyl-tRNA synthetase; Provisional	99.19
PRK05710	299	glutamyl-Q tRNA(Asp) synthetase; Reviewed	99.19
PRK05347	554	glutaminyl-tRNA synthetase; Provisional	99.19
TIGR00440	522	glnS glutaminyl-tRNA synthetase. This protein is a	99.16
PRK14703	771	glutaminyl-tRNA synthetase/YqeY domain fusion prot	99.15
KOG1195|consensus	567		99.15
PLN02907	722	glutamate-tRNA ligase	99.15
PRK12410	433	glutamylglutaminyl-tRNA synthetase; Provisional	99.13
TIGR00464	470	gltX_bact glutamyl-tRNA synthetase, bacterial fami	99.11
cd00418	230	GlxRS_core catalytic core domain of glutamyl-tRNA	99.09
PRK01406	476	gltX glutamyl-tRNA synthetase; Reviewed	99.08
PLN02627	535	glutamyl-tRNA synthetase	99.06
PRK14895	513	gltX glutamyl-tRNA synthetase; Provisional	99.06
PLN02859	788	glutamine-tRNA ligase	99.05
cd00808	239	GluRS_core catalytic core domain of discriminating	98.96
KOG1147|consensus	712		98.75
PF01921	360	tRNA-synt_1f: tRNA synthetases class I (K); InterP	98.47
KOG1149|consensus	524		98.3
KOG1148|consensus	764		98.25
COG1384	521	LysS Lysyl-tRNA synthetase (class I) [Translation,	98.15
TIGR00395	938	leuS_arch leucyl-tRNA synthetase, archaeal and cyt	97.95
PRK06039	975	ileS isoleucyl-tRNA synthetase; Reviewed	97.72
TIGR00392	861	ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA	97.53
PRK05743	912	ileS isoleucyl-tRNA synthetase; Reviewed	97.49
PTZ00419	995	valyl-tRNA synthetase-like protein; Provisional	97.28
PRK12300	897	leuS leucyl-tRNA synthetase; Reviewed	97.15
PRK13804	961	ileS isoleucyl-tRNA synthetase; Provisional	96.99
PF00133	601	tRNA-synt_1: tRNA synthetases class I (I, L, M and	96.66
COG0060	933	IleS Isoleucyl-tRNA synthetase [Translation, ribos	96.23
PLN02882	1159	aminoacyl-tRNA ligase	96.04
PLN02381	1066	valyl-tRNA synthetase	95.34
PF03485	85	Arg_tRNA_synt_N: Arginyl tRNA synthetase N termina	91.75
PRK12285	368	tryptophanyl-tRNA synthetase; Reviewed	91.22
cd00806	280	TrpRS_core catalytic core domain of tryptophanyl-t	91.04
PRK12284	431	tryptophanyl-tRNA synthetase; Reviewed	90.87
cd00805	269	TyrRS_core catalytic core domain of tyrosinyl-tRNA	90.76
COG1656	165	Uncharacterized conserved protein [Function unknow	90.68
cd00395	273	Tyr_Trp_RS_core catalytic core domain of tyrosinyl	90.32
PF01927	147	Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 T	90.15
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	88.54
PLN02886	389	aminoacyl-tRNA ligase	87.9
PRK05912	408	tyrosyl-tRNA synthetase; Validated	87.08
TIGR00233	328	trpS tryptophanyl-tRNA synthetase. This model repr	87.04
COG0180	314	TrpS Tryptophanyl-tRNA synthetase [Translation, ri	86.97
PLN02486	383	aminoacyl-tRNA ligase	86.72
PTZ00427	1205	isoleucine-tRNA ligase, putative; Provisional	86.0
PRK06266	178	transcription initiation factor E subunit alpha; V	85.71
PRK12556	332	tryptophanyl-tRNA synthetase; Provisional	85.57
PRK00927	333	tryptophanyl-tRNA synthetase; Reviewed	85.51
PRK08560	329	tyrosyl-tRNA synthetase; Validated	85.34
PRK13354	410	tyrosyl-tRNA synthetase; Provisional	84.74
PRK12283	398	tryptophanyl-tRNA synthetase; Reviewed	81.45
PTZ00126	383	tyrosyl-tRNA synthetase; Provisional	81.23
COG0162	401	TyrS Tyrosyl-tRNA synthetase [Translation, ribosom	81.06

>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.5e-41  Score=349.52  Aligned_cols=177  Identities=27%  Similarity=0.423  Sum_probs=169.1

Q ss_pred             CCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy7914         185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ  264 (365)
Q Consensus       185 ~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~  264 (365)
                      +++++||++.|||||+|||||++.++.+|+++||+|++|++|++++|+|+||++|+.+|+++|++|+++++++++.++++
T Consensus         4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~   83 (558)
T COG0143           4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKEL   83 (558)
T ss_pred             CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc-------------------
Q psy7914         265 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD-------------------  325 (365)
Q Consensus       265 l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve-------------------  325 (365)
                      +++|+|+||  .|.+|+++.|.+.++++|.+|+++|+||.+...+|||++|++||+|++|+                   
T Consensus        84 ~~~l~IsfD--~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~C  161 (558)
T COG0143          84 FKALNISFD--NFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENC  161 (558)
T ss_pred             HHHhCCccc--ccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhhc
Confidence            999999999  88999999999999999999999999999999999999999999999985                   


Q ss_pred             ---------cCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhccc
Q psy7914         326 ---------EQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDSVS  363 (365)
Q Consensus       326 ---------~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~~~  363 (365)
                               .+|+|.+||++||.|+++||||+|++|+++|++|+...
T Consensus       162 g~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~  208 (558)
T COG0143         162 GRTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESN  208 (558)
T ss_pred             cCcCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhC
Confidence                     24567788899999999999999999999999998753

>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family

Probab=100.00  E-value=2.9e-40  Score=357.61  Aligned_cols=176  Identities=60%  Similarity=1.121  Sum_probs=171.3

Q ss_pred             CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy7914         184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKS  263 (365)
Q Consensus       184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~  263 (365)
                      ++++++++.+||||||.|||||+++++++|+++||+||+|++|++.+|+|+||+||+..|.+.|++|.++++++.+.|++
T Consensus        27 ~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~  106 (842)
T TIGR00396        27 NKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKK  106 (842)
T ss_pred             CCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEee
Q psy7914         264 QLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLS  343 (365)
Q Consensus       264 ~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~  343 (365)
                      +|++||+++||++++.|+++.|++.++++|.+|+++|+||++..+++|||.|+|+|++.||+.+|+|..||.+++.++++
T Consensus       107 ~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~  186 (842)
T TIGR00396       107 QLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELK  186 (842)
T ss_pred             HHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecc
Confidence            99999999999999999999999999999999999999999999999999999999999997778999999999999999


Q ss_pred             eeeEeCchhHHHHHhh
Q psy7914         344 QWFIRTTRLANLVSLV  359 (365)
Q Consensus       344 ~~ff~Ls~~~~~L~~~  359 (365)
                      +|||+|++|+++|.++
T Consensus       187 ~~f~~i~~~~~~l~~~  202 (842)
T TIGR00396       187 QWFLKITAYAEELLND  202 (842)
T ss_pred             eeEEehhhhHHHHHHH
Confidence            9999999999999875

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.

>PLN02610 probable methionyl-tRNA synthetase

Probab=100.00  E-value=3e-40  Score=354.46  Aligned_cols=180  Identities=20%  Similarity=0.211  Sum_probs=170.1

Q ss_pred             CCCCCCCceEEEecCCCCCCCCchHHHHH-HHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHH
Q psy7914         180 EGKRREDNFYVLSMFPYPSGSLHMGHVRV-YTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNI  258 (365)
Q Consensus       180 ~~~~~~~~~~I~~~~PnpnG~LHiGHar~-~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~  258 (365)
                      .|..++++++||+++|||||+|||||+++ ++.+|+++||+|++|++|++++|+|+||++|+.+|++.|++|+++++++.
T Consensus        11 ~~~~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~   90 (801)
T PLN02610         11 LPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYH   90 (801)
T ss_pred             CCCCCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHH
Confidence            45567789999999999999999999997 67899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc-------------
Q psy7914         259 ATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD-------------  325 (365)
Q Consensus       259 ~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve-------------  325 (365)
                      +.+++++++|||++|  .|++|+++.|.+.|+++|.+|+++|+||++.+.+|||++|++||+|++|+             
T Consensus        91 ~~~~~~~~~l~i~~D--~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a  168 (801)
T PLN02610         91 AIHKEVYDWFDISFD--KFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSA  168 (801)
T ss_pred             HHHHHHHHHcCCccc--cCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCcccc
Confidence            999999999999998  88999999999999999999999999999999999999999999999874             


Q ss_pred             -----------------cCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914         326 -----------------EQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDS  361 (365)
Q Consensus       326 -----------------~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~  361 (365)
                                       ++|+|++||.++++++++||||+|++|+++|.+|+.
T Consensus       169 ~Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~  221 (801)
T PLN02610        169 RGDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYIN  221 (801)
T ss_pred             ccchhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHH
Confidence                             134677799999999999999999999999999985

>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases

Probab=100.00  E-value=3.8e-40  Score=329.14  Aligned_cols=171  Identities=33%  Similarity=0.537  Sum_probs=162.7

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc---------CCCH-------
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH---------GIDP-------  250 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~---------g~~~-------  250 (365)
                      +++|+++||||||+|||||+++++++|+++||+||+|++|++++|+|+||+||+..|+++         ++++       
T Consensus         2 ~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~   81 (382)
T cd00817           2 VFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKC   81 (382)
T ss_pred             cEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999764         3444       


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCc
Q psy7914         251 REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGIS  330 (365)
Q Consensus       251 ~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c  330 (365)
                      +++++++.+.+++++++|||++||+.++.|+++.|.+.|+++|.+|+++|+||++.++++||+.|+++|++.||     |
T Consensus        82 ~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev-----c  156 (382)
T cd00817          82 WEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV-----C  156 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh-----c
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999     8


Q ss_pred             cCCCCccEEEEeeeeeEeCchhHHHHHhhhcc
Q psy7914         331 WRSGARVEKRRLSQWFIRTTRLANLVSLVDSV  362 (365)
Q Consensus       331 ~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~~  362 (365)
                      ..||.+++.+.++||||+|++|+++|.+++..
T Consensus       157 ~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~  188 (382)
T cd00817         157 SRSGDVIEPLLKPQWFVKVKDLAKKALEAVKE  188 (382)
T ss_pred             ccCCCeEEEEecCeeEEehHHHHHHHHHHHhc
Confidence            99999999999999999999999999998754

Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>PLN02563 aminoacyl-tRNA ligase

Probab=100.00  E-value=6.3e-40  Score=356.93  Aligned_cols=176  Identities=48%  Similarity=0.878  Sum_probs=171.1

Q ss_pred             CCCceEEEecCCCCCCC-CchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHH
Q psy7914         184 REDNFYVLSMFPYPSGS-LHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMK  262 (365)
Q Consensus       184 ~~~~~~I~~~~PnpnG~-LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~  262 (365)
                      ++++++|+++||||||. |||||+++++++|+++||+||+|++|++.+|||+||+||+..|.+.|..|.+++.++.+.|+
T Consensus       108 ~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~  187 (963)
T PLN02563        108 SKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFR  187 (963)
T ss_pred             CCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHH
Confidence            45679999999999996 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEe
Q psy7914         263 SQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRL  342 (365)
Q Consensus       263 ~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~  342 (365)
                      ++|++||+++||++++.|+++.|++.++++|.+|+++|+||++..+++|||.|+|+|++.||+ +++|.+||.+++.+++
T Consensus       188 ~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~-~~~~~~~~~~~~~~~~  266 (963)
T PLN02563        188 SQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVV-DGLSERGGHPVIRKPM  266 (963)
T ss_pred             HHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhh-cCCCcCCCCceEEEec
Confidence            999999999999999999999999999999999999999999999999999999999999995 7899999999999999


Q ss_pred             eeeeEeCchhHHHHHhhh
Q psy7914         343 SQWFIRTTRLANLVSLVD  360 (365)
Q Consensus       343 ~~~ff~Ls~~~~~L~~~~  360 (365)
                      ++|||+|++|+++|.++.
T Consensus       267 ~q~f~~it~ya~~L~~~l  284 (963)
T PLN02563        267 RQWMLKITAYADRLLEDL  284 (963)
T ss_pred             ceeEEecchhHHHHHHhh
Confidence            999999999999999875

>PLN02224 methionine-tRNA ligase

Probab=100.00  E-value=6e-40  Score=343.32  Aligned_cols=175  Identities=17%  Similarity=0.234  Sum_probs=169.4

Q ss_pred             CCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy7914         185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ  264 (365)
Q Consensus       185 ~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~  264 (365)
                      +++++|++|||||||+|||||+++++++|+++||+|++|++|.+++|+||||++|+..|.+.|.+|.++|+++...+++.
T Consensus        68 ~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~  147 (616)
T PLN02224         68 ADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTL  147 (616)
T ss_pred             CCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeee
Q psy7914         265 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQ  344 (365)
Q Consensus       265 l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~  344 (365)
                      +++|||++|  .+++|+++.|.+.|+++|.+|+++|+||++++.+|||++|++++++.++..+++|+.||.++++++++|
T Consensus       148 ~~~l~I~~D--~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~~~~~~~~~~~~~~~~e~~  225 (616)
T PLN02224        148 WKDLDIAYD--KFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARKEDN  225 (616)
T ss_pred             HHHcCCCCC--cCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcCCCCCCCCCCcceEEecce
Confidence            999999887  889999999999999999999999999999999999999999999999866689999999999999999


Q ss_pred             eeEeCchhHHHHHhhhc
Q psy7914         345 WFIRTTRLANLVSLVDS  361 (365)
Q Consensus       345 ~ff~Ls~~~~~L~~~~~  361 (365)
                      |||+|++|+++|++|+.
T Consensus       226 ~ff~Ls~~~~~L~~~~~  242 (616)
T PLN02224        226 YFFALSKYQKPLEDILA  242 (616)
T ss_pred             EEEEhHHHHHHHHHHHH
Confidence            99999999999999985

>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6

Probab=100.00  E-value=6e-40  Score=328.32  Aligned_cols=173  Identities=28%  Similarity=0.501  Sum_probs=152.1

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG  267 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~  267 (365)
                      ++||+++|||||+|||||++.++.+|+++||+|++|++|.+++|+|+||++|+.+|+++|++|+++++++.+.|+++|++
T Consensus         1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~   80 (391)
T PF09334_consen    1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEA   80 (391)
T ss_dssp             EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred             CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc-c--------------------
Q psy7914         268 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD-E--------------------  326 (365)
Q Consensus       268 lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve-~--------------------  326 (365)
                      |||++|  .|.+|+++.|.+.|+++|++|+++|+||+++..+|||+.|++||++++|+ .                    
T Consensus        81 ~~I~~D--~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~~  158 (391)
T PF09334_consen   81 LNISYD--RFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGRP  158 (391)
T ss_dssp             TT---S--EEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTSSB
T ss_pred             cCCCCc--ceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccCCCCC
Confidence            999999  88999999999999999999999999999999999999999999999994 1                    


Q ss_pred             -------CCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhcc
Q psy7914         327 -------QGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDSV  362 (365)
Q Consensus       327 -------~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~~  362 (365)
                             +++|..||.+++++++++|||+|++|+++|++|...
T Consensus       159 ~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~  201 (391)
T PF09334_consen  159 LEPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLES  201 (391)
T ss_dssp             EECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHH
T ss_pred             cccccccCCccccccccCccccceEEEEehHHhHHHHHHHHhc
Confidence                   223445566667999999999999999999999853

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....

>PRK00390 leuS leucyl-tRNA synthetase; Validated

Probab=100.00  E-value=3.5e-39  Score=348.14  Aligned_cols=173  Identities=61%  Similarity=1.102  Sum_probs=169.1

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      +++++.+||||||.|||||+++++++|+++||+||+|++|++++|+|+||+||+..|.+.|++|.++++++.+.|+++|+
T Consensus        33 ~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~  112 (805)
T PRK00390         33 KYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLK  112 (805)
T ss_pred             CEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeee
Q psy7914         267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWF  346 (365)
Q Consensus       267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~f  346 (365)
                      +||+++||++++.|+++.|.+.++++|.+|+++|+||++..+++|||.|+|+|++.||+ +++|..||.+++.+++++||
T Consensus       113 ~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~-~~~~~~~~~~~~~~~~~~~f  191 (805)
T PRK00390        113 SLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVI-DGRCWRCGAPVEKKELRQWF  191 (805)
T ss_pred             HhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhh-CCeecccCCeeEEEecceee
Confidence            99999999999999999999999999999999999999999999999999999999996 68999999999999999999


Q ss_pred             EeCchhHHHHHhhh
Q psy7914         347 IRTTRLANLVSLVD  360 (365)
Q Consensus       347 f~Ls~~~~~L~~~~  360 (365)
                      |+|++|+++|.++.
T Consensus       192 ~~i~~~~~~L~~~l  205 (805)
T PRK00390        192 LKITDYADELLDDL  205 (805)
T ss_pred             EecchhHHHHHHHH
Confidence            99999999998864

>PRK12267 methionyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=5.5e-39  Score=340.27  Aligned_cols=175  Identities=25%  Similarity=0.375  Sum_probs=168.8

Q ss_pred             CceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy7914         186 DNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL  265 (365)
Q Consensus       186 ~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l  265 (365)
                      ++++|++++|||||++||||+++++.+|+++||+|++|++|.+++|+||||++|+..|++.|++|.++++.+.+.|+++|
T Consensus         4 ~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l   83 (648)
T PRK12267          4 KTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELW   83 (648)
T ss_pred             CCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeee
Q psy7914         266 QGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQW  345 (365)
Q Consensus       266 ~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~  345 (365)
                      ++|||++|  .+.+|+++.|.+.++++|.+|.++|+||+++..+|||+.|++||+++++..+|+|+.||.++|+++++||
T Consensus        84 ~~lgI~~D--~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~~e~~~~~~~  161 (648)
T PRK12267         84 KKLDISYD--KFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGREVELVKEESY  161 (648)
T ss_pred             HHcCCCCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhccCCcCCCCCCcCeEEecceE
Confidence            99999998  7788999999999999999999999999999999999999999999998544899999999999999999


Q ss_pred             eEeCchhHHHHHhhhcc
Q psy7914         346 FIRTTRLANLVSLVDSV  362 (365)
Q Consensus       346 ff~Ls~~~~~L~~~~~~  362 (365)
                      ||+|++|+++|.+|+..
T Consensus       162 f~~l~~~~~~l~~~~~~  178 (648)
T PRK12267        162 FFRMSKYQDRLLEYYEE  178 (648)
T ss_pred             EEEcHHHHHHHHHHHhh
Confidence            99999999999999853

>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.5e-38  Score=337.30  Aligned_cols=172  Identities=60%  Similarity=1.075  Sum_probs=168.2

Q ss_pred             CceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy7914         186 DNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL  265 (365)
Q Consensus       186 ~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l  265 (365)
                      +|++|+.+.|||||.||+||.|+|+++|+++||+||+||+|++.+|||..|+|++..|.+.+.+|..|+..+.+.++++|
T Consensus        34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~ql  113 (814)
T COG0495          34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQL  113 (814)
T ss_pred             CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeee
Q psy7914         266 QGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQW  345 (365)
Q Consensus       266 ~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~  345 (365)
                      ++||.++||++++.|+||+|+++++++|.+|+++|++|+++.+|.|||.|+|.|++.+| .+|.|++||.+|+.++..+|
T Consensus       114 k~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv-~~g~~~r~~~~V~~kel~qw  192 (814)
T COG0495         114 KSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQV-IDGGCWRCGEPVEIKELTQW  192 (814)
T ss_pred             HHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEeccccceeCCCcCCcccccee-ecCCcccCCCceeEeeeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999 48888999999999999999


Q ss_pred             eEeCchhHHHHHh
Q psy7914         346 FIRTTRLANLVSL  358 (365)
Q Consensus       346 ff~Ls~~~~~L~~  358 (365)
                      ||++++|+++|.+
T Consensus       193 ~~kit~yae~ll~  205 (814)
T COG0495         193 FFKITDYADELLD  205 (814)
T ss_pred             EEEechhHHHHHh
Confidence            9999999998764

>PRK00133 metG methionyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=7.4e-38  Score=332.75  Aligned_cols=173  Identities=27%  Similarity=0.415  Sum_probs=165.8

Q ss_pred             CceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy7914         186 DNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL  265 (365)
Q Consensus       186 ~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l  265 (365)
                      ++++|++++|||||+|||||+++++++|+++||+|++|++|.+++|+|+||++|+..|++.|++|.++++++.+.|++++
T Consensus         2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~   81 (673)
T PRK00133          2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDF   81 (673)
T ss_pred             CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc--------------------
Q psy7914         266 QGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD--------------------  325 (365)
Q Consensus       266 ~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve--------------------  325 (365)
                      ++|||++|  .+.+|+++.|.+.++++|.+|+++|+||++++.+|||+.|++||++++|+                    
T Consensus        82 ~~l~i~~d--~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg  159 (673)
T PRK00133         82 AGFGISFD--NYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCG  159 (673)
T ss_pred             HHhCCCCC--CCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhcc
Confidence            99999988  67899999999999999999999999999999999999999999999875                    


Q ss_pred             --------cCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhh
Q psy7914         326 --------EQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVD  360 (365)
Q Consensus       326 --------~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~  360 (365)
                              .+++|.+||.++|+++++||||+|++|+++|.+|+
T Consensus       160 ~~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~  202 (673)
T PRK00133        160 ATYSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWI  202 (673)
T ss_pred             ccCChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHH
Confidence                    14568889999999999999999999999999996

>PRK12268 methionyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=2.2e-37  Score=322.80  Aligned_cols=175  Identities=27%  Similarity=0.429  Sum_probs=164.6

Q ss_pred             CCceEEEecCCCCCCCCchHHHHHH-HHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy7914         185 EDNFYVLSMFPYPSGSLHMGHVRVY-TISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKS  263 (365)
Q Consensus       185 ~~~~~I~~~~PnpnG~LHiGHar~~-v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~  263 (365)
                      +++++|+++||||||.|||||++++ +.+|+++||+|++|++|.+++|+||||++|+.+|++.|+++.++++++.+.|++
T Consensus         2 ~~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~   81 (556)
T PRK12268          2 MMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKE   81 (556)
T ss_pred             CCcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            3579999999999999999999997 999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccccccccc-----------------
Q psy7914         264 QLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDE-----------------  326 (365)
Q Consensus       264 ~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~-----------------  326 (365)
                      ++++|||.+|  .+++|+++.|.+.++++|.+|+++|+||++.+.+|||+.|+++|++++|.-                 
T Consensus        82 ~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~  159 (556)
T PRK12268         82 DFKKLGISYD--LFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDN  159 (556)
T ss_pred             HHHHcCCcCC--CCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhh
Confidence            9999999887  678999999999999999999999999999999999999999999999741                 


Q ss_pred             -----------CCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914         327 -----------QGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDS  361 (365)
Q Consensus       327 -----------~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~  361 (365)
                                 +|+|.+||.++|++.+++|||+|++|+++|.++..
T Consensus       160 cg~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~  205 (556)
T PRK12268        160 CGALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIE  205 (556)
T ss_pred             ccccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHh
Confidence                       23566677899999999999999999999999875

>PRK11893 methionyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=4.9e-37  Score=316.76  Aligned_cols=173  Identities=23%  Similarity=0.340  Sum_probs=166.3

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      +++|+++||||||++||||+|+++.+|+++||+|++|++|.+++|+||||++|+..|++.|+++.++++.+.+.|+++|+
T Consensus         2 ~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~   81 (511)
T PRK11893          2 KFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWE   81 (511)
T ss_pred             CEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccC--CCccCCCCccEEEEeee
Q psy7914         267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQ--GISWRSGARVEKRRLSQ  344 (365)
Q Consensus       267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~--~~c~~~g~~~e~~~~~~  344 (365)
                      +|||.+|  .+.+|+++.|.+.|+++|.+|.++|++|++.+.+|||+.|+++|+++++. +  |.|++||.+++++++++
T Consensus        82 ~l~I~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~-~~~p~~~~~~~~~~~~~~~~  158 (511)
T PRK11893         82 ALNISYD--DFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELI-EDGYRCPPTGAPVEWVEEES  158 (511)
T ss_pred             HhCCCcC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhc-CCCCCCCCCCCcceEEecCe
Confidence            9999988  67889999999999999999999999999999999999999999999985 4  56999999999999999


Q ss_pred             eeEeCchhHHHHHhhhcc
Q psy7914         345 WFIRTTRLANLVSLVDSV  362 (365)
Q Consensus       345 ~ff~Ls~~~~~L~~~~~~  362 (365)
                      |||+|++|+++|.+++..
T Consensus       159 ~f~~l~~~~~~l~~~~~~  176 (511)
T PRK11893        159 YFFRLSKYQDKLLELYEA  176 (511)
T ss_pred             EEEEcHHHHHHHHHHHHh
Confidence            999999999999998753

>PRK13208 valS valyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=6.7e-37  Score=331.10  Aligned_cols=140  Identities=40%  Similarity=0.665  Sum_probs=134.4

Q ss_pred             CCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH-cCCCHH------------
Q psy7914         185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ-HGIDPR------------  251 (365)
Q Consensus       185 ~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~-~g~~~~------------  251 (365)
                      +++++|+.|||||||+|||||+++++++|+++||+||+|++|++.+|+|+||+||+..|++ .|+++.            
T Consensus        37 ~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~  116 (800)
T PRK13208         37 KPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCR  116 (800)
T ss_pred             CCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHH
Confidence            4579999999999999999999999999999999999999999999999999999999987 487765            


Q ss_pred             HHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccccccc
Q psy7914         252 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQV  324 (365)
Q Consensus       252 e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~ev  324 (365)
                      +|++++.+.|++++++||+++||++++.|+++.|.+.++++|.+|+++|+||++.++++|||.|+|+||+.||
T Consensus       117 ~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev  189 (800)
T PRK13208        117 ELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEV  189 (800)
T ss_pred             HHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCccchhhh
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999977

>TIGR00398 metG methionyl-tRNA synthetase

Probab=100.00  E-value=1.5e-36  Score=314.94  Aligned_cols=172  Identities=24%  Similarity=0.353  Sum_probs=163.0

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG  267 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~  267 (365)
                      ++|++++|||||+|||||+++++.+|+++||+|++|++|.+++|+||||++|+..|+++|++|.++++.+.+.|++++++
T Consensus         1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~   80 (530)
T TIGR00398         1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKW   80 (530)
T ss_pred             CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc----------------------
Q psy7914         268 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD----------------------  325 (365)
Q Consensus       268 lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve----------------------  325 (365)
                      |||.+|  .+.+|+++.|.+.++++|.+|.++|++|++++.+|||+.|+++|++++|+                      
T Consensus        81 LgI~~D--~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~  158 (530)
T TIGR00398        81 LNISFD--RFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRH  158 (530)
T ss_pred             hCCCCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhcccc
Confidence            999988  56789999999999999999999999999999999999999999999764                      


Q ss_pred             ------cCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914         326 ------EQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDS  361 (365)
Q Consensus       326 ------~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~  361 (365)
                            .+|+|++||.++|+++++||||+|++|+++|.+++.
T Consensus       159 ~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~  200 (530)
T TIGR00398       159 LEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIR  200 (530)
T ss_pred             CCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHH
Confidence                  124577789999999999999999999999999985

The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma

>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases

Probab=100.00  E-value=1.3e-35  Score=289.94  Aligned_cols=157  Identities=23%  Similarity=0.365  Sum_probs=151.5

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      +++|+.++|||||+|||||+++++++|+++||+|++|++|.+++|+||||++|+.+|++.|++|+++++.+.+.|+++|+
T Consensus         1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~   80 (319)
T cd00814           1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFK   80 (319)
T ss_pred             CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeee
Q psy7914         267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWF  346 (365)
Q Consensus       267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~f  346 (365)
                      +|||.+|  .+.+|+++.|.+.++++|++|.++|++|+++..++||+.|+++|+                 |++++++||
T Consensus        81 ~LgI~~D--~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~-----------------e~~~~~~~f  141 (319)
T cd00814          81 WLNISFD--YFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP-----------------EWREEEHYF  141 (319)
T ss_pred             HcCCcCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee-----------------EEEeeeeEE
Confidence            9999888  778899999999999999999999999999999999999999999                 899999999


Q ss_pred             EeCchhHHHHHhhhcc
Q psy7914         347 IRTTRLANLVSLVDSV  362 (365)
Q Consensus       347 f~Ls~~~~~L~~~~~~  362 (365)
                      |+|++|+++|++++..
T Consensus       142 f~l~~~~~~l~~~~~~  157 (319)
T cd00814         142 FRLSKFQDRLLEWLEK  157 (319)
T ss_pred             EEhHHHHHHHHHHHHh
Confidence            9999999999988653

Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.

>KOG0435|consensus

Probab=100.00  E-value=5.9e-37  Score=311.27  Aligned_cols=175  Identities=62%  Similarity=1.173  Sum_probs=170.7

Q ss_pred             CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy7914         184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKS  263 (365)
Q Consensus       184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~  263 (365)
                      +++| +|+...|||+|.|||||.|.|++.|++|||.||+||+|+..+|||.+|+|.+.+|.+.|++|..|...+++.+++
T Consensus        56 sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~  134 (876)
T KOG0435|consen   56 SKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQ  134 (876)
T ss_pred             CCCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHH
Confidence            3445 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEee
Q psy7914         264 QLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLS  343 (365)
Q Consensus       264 ~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~  343 (365)
                      +|++||+.|||+++.+|++|+|+++.|.+|.+|+++|++|+.+..|.|||.+.|.|++.+|+.+|+++++|+++|.+...
T Consensus       135 Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~Lr  214 (876)
T KOG0435|consen  135 QLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLR  214 (876)
T ss_pred             HHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCcccceeecchhhcccCccccccchhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEeCchhHHHHHhh
Q psy7914         344 QWFIRTTRLANLVSLV  359 (365)
Q Consensus       344 ~~ff~Ls~~~~~L~~~  359 (365)
                      +||++.++|+++|.+-
T Consensus       215 QWfikttaYAk~L~d~  230 (876)
T KOG0435|consen  215 QWFIKTTAYAKRLLDG  230 (876)
T ss_pred             HHHhhhhHHHHHHHHH
Confidence            9999999999998763

>TIGR00422 valS valyl-tRNA synthetase

Probab=100.00  E-value=1.5e-35  Score=322.87  Aligned_cols=163  Identities=32%  Similarity=0.507  Sum_probs=141.4

Q ss_pred             HHhhhHHHHHhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccC
Q psy7914         152 LVCDGVYRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMG  231 (365)
Q Consensus       152 ~~~~~ly~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g  231 (365)
                      .++...+.+|..   ...|....       ..++++++|+.||||+||.||+||+++++++|+++||+||+|++|++.+|
T Consensus         9 ~iE~~~~~~W~~---~~~f~~~~-------~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G   78 (861)
T TIGR00422         9 EVEKKWYKKWEK---SGFFKPDG-------NSNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPG   78 (861)
T ss_pred             HHHHHHHHHHHH---CCCcccCc-------ccCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCC
Confidence            355566666632   23443321       12345799999999999999999999999999999999999999999999


Q ss_pred             CCCCCchHHHHHHH----cCCCH------------HHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHH
Q psy7914         232 WDAFGLPAENAAHQ----HGIDP------------REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLD  295 (365)
Q Consensus       232 ~Dd~G~~I~~~A~~----~g~~~------------~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~  295 (365)
                      +|+||+||+..+++    .|.++            ++|++++.+.|++++++||+++||++.+.|+|+.|.+.|+++|.+
T Consensus        79 ~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~  158 (861)
T TIGR00422        79 TDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVR  158 (861)
T ss_pred             cCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHH
Confidence            99999999998865    35554            577899999999999999999999999999999999999999999


Q ss_pred             HHHCCCEEEeCcceeecCCCCcccccccc
Q psy7914         296 LYHAGLVYRKEATVNWDPIDNTVLADEQV  324 (365)
Q Consensus       296 L~~kG~Iy~~~~~v~yc~~~~t~Ls~~ev  324 (365)
                      |+++|+||++.+.++|||.|+|+||+.||
T Consensus       159 L~~~GlIy~~~~~v~wcp~~~t~lsd~Ev  187 (861)
T TIGR00422       159 LYEKGLIYRGEYLVNWDPKLNTAISDIEV  187 (861)
T ss_pred             HHHCCCeeecCcccccCCCCCCcchHhHh
Confidence            99999999999999999999999999763

The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.

>PRK05729 valS valyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=7e-35  Score=317.78  Aligned_cols=140  Identities=34%  Similarity=0.555  Sum_probs=130.6

Q ss_pred             CceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH----cCCCH-----------
Q psy7914         186 DNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ----HGIDP-----------  250 (365)
Q Consensus       186 ~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~----~g~~~-----------  250 (365)
                      ++|+|+.||||+||.|||||+++++++|+++||.||+|++|++++|+|+||++++..+++    .|+++           
T Consensus        36 ~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~  115 (874)
T PRK05729         36 KPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEK  115 (874)
T ss_pred             CCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHH
Confidence            359999999999999999999999999999999999999999999999999998776643    36654           


Q ss_pred             -HHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc
Q psy7914         251 -REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD  325 (365)
Q Consensus       251 -~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve  325 (365)
                       ++|++++.+.|++++++||+++||+++++|+|+.|.+.|+++|.+|+++|+||++.++++|||.|+|+||+.||+
T Consensus       116 ~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~  191 (874)
T PRK05729        116 VWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVE  191 (874)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEeecCcccccCCCCCCcchhhhcc
Confidence             456899999999999999999999999999999999999999999999999999999999999999999998885

>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.7e-33  Score=295.81  Aligned_cols=165  Identities=33%  Similarity=0.546  Sum_probs=142.4

Q ss_pred             HHHhhhHHHHHhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEecc
Q psy7914         151 KLVCDGVYRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPM  230 (365)
Q Consensus       151 ~~~~~~ly~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~  230 (365)
                      ..++..+|..|..   .. |.+.....      +.+++.|..||||+||.||||||.+.++.|+++||.||+||+|++.+
T Consensus         8 ~~iE~k~~~~W~~---~~-~f~~~~~~------~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~p   77 (877)
T COG0525           8 KEIEEKWYKKWEE---SG-YFKPDPNE------DKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPP   77 (877)
T ss_pred             hhhhHHHHHHHHh---cC-CccCCCCC------CCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCC
Confidence            3466777887732   22 33321111      10359999999999999999999999999999999999999999999


Q ss_pred             CCCCCCchHHHHHHH----cCCC------------HHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHH
Q psy7914         231 GWDAFGLPAENAAHQ----HGID------------PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFL  294 (365)
Q Consensus       231 g~Dd~G~~I~~~A~~----~g~~------------~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~  294 (365)
                      |+||||++++...++    .|++            +++|.+++.+.|+++|++||+++||+++++|+|+++.+.|+++|.
T Consensus        78 G~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv  157 (877)
T COG0525          78 GTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFV  157 (877)
T ss_pred             CCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHH
Confidence            999999999988865    2544            267889999999999999999999999999999999999999999


Q ss_pred             HHHHCCCEEEeCcceeecCCCCccccccccc
Q psy7914         295 DLYHAGLVYRKEATVNWDPIDNTVLADEQVD  325 (365)
Q Consensus       295 ~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve  325 (365)
                      +|+++|+||++.+.|.|||.|+|+||+.||+
T Consensus       158 ~Ly~~GlIYr~~~lVNWcP~~~TAiSd~EVe  188 (877)
T COG0525         158 RLYEKGLIYRGERLVNWCPKCRTAISDIEVE  188 (877)
T ss_pred             HHHHCCceeecCCcccCCCccccchhhhhhc
Confidence            9999999999999999999999999998874

>PRK14900 valS valyl-tRNA synthetase; Provisional

Probab=100.00  E-value=5.3e-33  Score=306.75  Aligned_cols=142  Identities=27%  Similarity=0.448  Sum_probs=131.1

Q ss_pred             CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH-----cCCC---------
Q psy7914         184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ-----HGID---------  249 (365)
Q Consensus       184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~-----~g~~---------  249 (365)
                      ++++|+|+.||||+||.|||||+++++++|+++||+||+|++|++.+|+|+||++++..+++     .|.+         
T Consensus        46 ~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f  125 (1052)
T PRK14900         46 TRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAF  125 (1052)
T ss_pred             CCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHH
Confidence            44679999999999999999999999999999999999999999999999999999887754     1333         


Q ss_pred             ---HHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc
Q psy7914         250 ---PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD  325 (365)
Q Consensus       250 ---~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve  325 (365)
                         +++|++++.+.|+++|++||+++||++++.|+|+.|.+.++++|.+|+++|+||++.++++|||.|+|+||+.||+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~  204 (1052)
T PRK14900        126 LERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVE  204 (1052)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeccceeccCCCCCCCccHHHhc
Confidence               3457899999999999999999999999999999999999999999999999999999999999999999987763

>KOG0436|consensus

Probab=100.00  E-value=4.6e-33  Score=270.98  Aligned_cols=173  Identities=22%  Similarity=0.330  Sum_probs=167.6

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      ++++++|..|||.++|+||+++.+++|+++|+.|.+|..|.+.+|+|+||++|+..|...|.+|.++|+.+...+++.++
T Consensus        40 ~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k  119 (578)
T KOG0436|consen   40 TFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWK  119 (578)
T ss_pred             eeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCcc------CCCCccEEE
Q psy7914         267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISW------RSGARVEKR  340 (365)
Q Consensus       267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~------~~g~~~e~~  340 (365)
                      .+||.++  .|++|++|.|...|++++..+.++|+||++++..|||.+|++|+++..|..+++|+      .+|+++.|+
T Consensus       120 ~~gi~yt--~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~  197 (578)
T KOG0436|consen  120 DAGIAYT--KFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWR  197 (578)
T ss_pred             HhCcchh--heeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEe
Confidence            9999998  99999999999999999999999999999999999999999999999998777765      799999999


Q ss_pred             EeeeeeEeCchhHHHHHhhhc
Q psy7914         341 RLSQWFIRTTRLANLVSLVDS  361 (365)
Q Consensus       341 ~~~~~ff~Ls~~~~~L~~~~~  361 (365)
                      +|+||||+||+|+..|.++.-
T Consensus       198 kE~NY~FrLSkfqk~l~d~lr  218 (578)
T KOG0436|consen  198 KEDNYFFRLSKFQKPLEDHLR  218 (578)
T ss_pred             cccceeeeHHhhhhHHHHHHh
Confidence            999999999999999998864

>PLN02943 aminoacyl-tRNA ligase

Probab=100.00  E-value=7.6e-33  Score=303.34  Aligned_cols=141  Identities=30%  Similarity=0.501  Sum_probs=131.3

Q ss_pred             CCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH----cCCCH----------
Q psy7914         185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ----HGIDP----------  250 (365)
Q Consensus       185 ~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~----~g~~~----------  250 (365)
                      +++|+|+.|||||||.|||||+++++++|+++||.||+||+|++.+|+|+||+|++..+++    .|+++          
T Consensus        87 ~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~  166 (958)
T PLN02943         87 GDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTK  166 (958)
T ss_pred             CCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHH
Confidence            4569999999999999999999999999999999999999999999999999999887654    35443          


Q ss_pred             --HHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc
Q psy7914         251 --REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD  325 (365)
Q Consensus       251 --~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve  325 (365)
                        ++|++++.+.|++++++||+++||+++++|+|+.|.+.++++|.+|+++|+||++.++|+|||.|+|+||+.||+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Eve  243 (958)
T PLN02943        167 RVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE  243 (958)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhh
Confidence              567789999999999999999999999999999999999999999999999999999999999999999988764

>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases

Probab=100.00  E-value=7.2e-33  Score=272.62  Aligned_cols=151  Identities=32%  Similarity=0.568  Sum_probs=144.7

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc-CCCH---------------
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH-GIDP---------------  250 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~-g~~~---------------  250 (365)
                      +++|..+||||||+|||||+|+++++|+++||+|++|++|.+++|+||||+||+.+|++. |+++               
T Consensus         2 ~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~   81 (338)
T cd00818           2 EFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAK   81 (338)
T ss_pred             CeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHH
Confidence            589999999999999999999999999999999999999999999999999999999886 7654               


Q ss_pred             -HHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCC
Q psy7914         251 -REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGI  329 (365)
Q Consensus       251 -~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~  329 (365)
                       +++++++.+.|++++++|||++||+.++.|+++.|.+.++++|.+|+++|+||++.+.++|                  
T Consensus        82 ~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~------------------  143 (338)
T cd00818          82 CREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW------------------  143 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee------------------
Confidence             6899999999999999999999999999999999999999999999999999999999999                  


Q ss_pred             ccCCCCccEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914         330 SWRSGARVEKRRLSQWFIRTTRLANLVSLVDS  361 (365)
Q Consensus       330 c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~  361 (365)
                            ++++++++||||+|++|+++|.+++.
T Consensus       144 ------~v~~~~~~qwf~~l~~~~~~l~~~~~  169 (338)
T cd00818         144 ------PLIYRATPQWFIRVTKIKDRLLEAND  169 (338)
T ss_pred             ------EEEEEecCeEEEEcHHHHHHHHHHHh
Confidence                  88999999999999999999999875

Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases

Probab=100.00  E-value=9.9e-33  Score=269.08  Aligned_cols=149  Identities=56%  Similarity=1.011  Sum_probs=144.5

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      |++|+++||||||++||||+|+++++|+++||+|++|++|.+++|+||||+||+..|++.|.+|.++++++.+.++++++
T Consensus         1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~   80 (314)
T cd00812           1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLK   80 (314)
T ss_pred             CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeee
Q psy7914         267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWF  346 (365)
Q Consensus       267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~f  346 (365)
                      +|||++||+.++.|+++.|.+.++++|.+|+++|+||++.+.++||                           ++++|||
T Consensus        81 ~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~---------------------------~~~~~~f  133 (314)
T cd00812          81 RMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC---------------------------KLLDQWF  133 (314)
T ss_pred             HhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee---------------------------CccceEE
Confidence            9999999888999999999999999999999999999999999999                           7789999


Q ss_pred             EeC--chhHHHHHhhhcc
Q psy7914         347 IRT--TRLANLVSLVDSV  362 (365)
Q Consensus       347 f~L--s~~~~~L~~~~~~  362 (365)
                      |+|  ++|+++|.+++..
T Consensus       134 ~~l~~~~~~~~l~~~l~~  151 (314)
T cd00812         134 LKYSETEWKEKLLKDLEK  151 (314)
T ss_pred             EEcCcHHHHHHHHHHHHh
Confidence            999  9999999998853

Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed

Probab=99.97  E-value=9.1e-32  Score=295.87  Aligned_cols=142  Identities=27%  Similarity=0.424  Sum_probs=135.9

Q ss_pred             CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc-CCC-------------
Q psy7914         184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH-GID-------------  249 (365)
Q Consensus       184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~-g~~-------------  249 (365)
                      ++++|+++++||||||.||+||+++++++|+++||.||+||+|++.+|||+||+||+..+++. |++             
T Consensus        39 ~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f  118 (975)
T PRK06039         39 GGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKF  118 (975)
T ss_pred             CCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHH
Confidence            456799999999999999999999999999999999999999999999999999999999773 654             


Q ss_pred             ---HHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc
Q psy7914         250 ---PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD  325 (365)
Q Consensus       250 ---~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve  325 (365)
                         +++++.++.+.+++++++||+++||++.+.|+|+.|.+.++++|.+|+++|+||++.++++|||.|+|+||+.||+
T Consensus       119 ~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~  197 (975)
T PRK06039        119 NEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVA  197 (975)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCCccHHHHh
Confidence               5788999999999999999999999999999999999999999999999999999999999999999999999997

>TIGR00392 ileS isoleucyl-tRNA synthetase

Probab=99.97  E-value=1.4e-31  Score=291.91  Aligned_cols=149  Identities=33%  Similarity=0.588  Sum_probs=137.8

Q ss_pred             CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc-CCC------H------
Q psy7914         184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH-GID------P------  250 (365)
Q Consensus       184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~-g~~------~------  250 (365)
                      ++++++|+++||||||.||+||+++++++|+++||+||+|++|++.+|+|+||+||+..|++. |++      +      
T Consensus        34 ~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f  113 (861)
T TIGR00392        34 GKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEF  113 (861)
T ss_pred             CCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHH
Confidence            446799999999999999999999999999999999999999999999999999999999765 543      3      


Q ss_pred             ----HHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccccccccc
Q psy7914         251 ----REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDE  326 (365)
Q Consensus       251 ----~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~  326 (365)
                          ++++.++.+.++++|++||+++||++.+.|++|.|.+.++++|.+|+++|+||++.++|+|||.|+|+||+.||++
T Consensus       114 ~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~  193 (861)
T TIGR00392       114 REKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCRTALAEAEVEY  193 (861)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEeecceeeecCCCcCCcccHHHHhc
Confidence                4788999999999999999999999999999999999999999999999999999999999999999999999975


Q ss_pred             CCCccCC
Q psy7914         327 QGISWRS  333 (365)
Q Consensus       327 ~~~c~~~  333 (365)
                      + .|..+
T Consensus       194 ~-~~~~~  199 (861)
T TIGR00392       194 K-ENYKD  199 (861)
T ss_pred             c-ccccc
Confidence            3 34333

The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.

>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed

Probab=99.97  E-value=1.2e-31  Score=292.95  Aligned_cols=145  Identities=22%  Similarity=0.422  Sum_probs=137.0

Q ss_pred             CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc------CCCHH------
Q psy7914         184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH------GIDPR------  251 (365)
Q Consensus       184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~------g~~~~------  251 (365)
                      ++++|+|+++|||+||.|||||+++++++|+++||+||+|++|++++|+|+||+||+..|++.      ++++.      
T Consensus        47 ~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c  126 (912)
T PRK05743         47 GKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKC  126 (912)
T ss_pred             CCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHH
Confidence            456799999999999999999999999999999999999999999999999999999999874      56665      


Q ss_pred             -HHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCC
Q psy7914         252 -EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQG  328 (365)
Q Consensus       252 -e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~  328 (365)
                       ++++++.+.++++|++||+++||++++.|+++.|.+.++++|.+|+++|+||++.++++|||.|+|+|++.||++..
T Consensus       127 ~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~  204 (912)
T PRK05743        127 REYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHD  204 (912)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhccc
Confidence             47899999999999999999999999999999999999999999999999999999999999999999999998643

>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional

Probab=99.97  E-value=3e-31  Score=290.91  Aligned_cols=145  Identities=24%  Similarity=0.436  Sum_probs=134.8

Q ss_pred             CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc----CCC----------
Q psy7914         184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH----GID----------  249 (365)
Q Consensus       184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~----g~~----------  249 (365)
                      ++++|+++++|||+||.||+||+++++++|+++||.||+||+|.+++|||+||+||+.++++.    |..          
T Consensus        52 ~~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~  131 (961)
T PRK13804         52 GRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFR  131 (961)
T ss_pred             CCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHH
Confidence            456799999999999999999999999999999999999999999999999999999988664    332          


Q ss_pred             --HHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccC
Q psy7914         250 --PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQ  327 (365)
Q Consensus       250 --~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~  327 (365)
                        +++|+.++.+.+++++++||++.||++.+.|+++.|.+.++++|.+|+++|+||++.++|+|||.|+|+|++.||++.
T Consensus       132 ~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~~TaLa~~Evey~  211 (961)
T PRK13804        132 KECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIEYH  211 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeCCcceecCCCCCCCccchhcccc
Confidence              245788899999999999999999999999999999999999999999999999999999999999999999999864


Q ss_pred             C
Q psy7914         328 G  328 (365)
Q Consensus       328 ~  328 (365)
                      .
T Consensus       212 ~  212 (961)
T PRK13804        212 D  212 (961)
T ss_pred             c
Confidence            3

>PLN02381 valyl-tRNA synthetase

Probab=99.97  E-value=2.8e-31  Score=292.99  Aligned_cols=167  Identities=28%  Similarity=0.447  Sum_probs=145.0

Q ss_pred             HHHhhhHHHHHhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEecc
Q psy7914         151 KLVCDGVYRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPM  230 (365)
Q Consensus       151 ~~~~~~ly~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~  230 (365)
                      +.++...|.+|..   ...|....       ..++++|+|+.||||+||+|||||+++++++|+++||+||+|++|++.+
T Consensus       103 ~~iE~~w~~~W~~---~~~f~~~~-------~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~  172 (1066)
T PLN02381        103 SAVEKSWYAWWEK---SGYFGADA-------KSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVP  172 (1066)
T ss_pred             HHHHHHHHHHHHH---CCCccCCc-------cCCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccC
Confidence            3456666666622   23343211       1245679999999999999999999999999999999999999999999


Q ss_pred             CCCCCCchHHHHHHH-----cCCCH------------HHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHH
Q psy7914         231 GWDAFGLPAENAAHQ-----HGIDP------------REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALF  293 (365)
Q Consensus       231 g~Dd~G~~I~~~A~~-----~g~~~------------~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f  293 (365)
                      |||+||+|++..+++     .|.++            ++|++++.+.|++++++||+++||++++.|+|+.|.+.|+++|
T Consensus       173 G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F  252 (1066)
T PLN02381        173 GVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAF  252 (1066)
T ss_pred             CCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHH
Confidence            999999999999865     25443            4778999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCEEEeCcceeecCCCCccccccccccC
Q psy7914         294 LDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQ  327 (365)
Q Consensus       294 ~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~  327 (365)
                      .+|+++|+||++.++|+|||.|+|+||+.||++.
T Consensus       253 ~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~  286 (1066)
T PLN02381        253 VRLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYI  286 (1066)
T ss_pred             HHHHHCCCEEeccccccCCCCCCCCccHHHhhhh
Confidence            9999999999999999999999999999999753

>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6

Probab=99.97  E-value=5e-31  Score=277.29  Aligned_cols=145  Identities=39%  Similarity=0.733  Sum_probs=126.5

Q ss_pred             CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc-CC--------------
Q psy7914         184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH-GI--------------  248 (365)
Q Consensus       184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~-g~--------------  248 (365)
                      ++++|+|+.||||+||.||+||++++++.|+++||.||+|++|++.+|+|+||+||+..+++. |.              
T Consensus        21 ~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~  100 (601)
T PF00133_consen   21 NKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEF  100 (601)
T ss_dssp             TSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHH
T ss_pred             CCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccc
Confidence            346799999999999999999999999999999999999999999999999999999998763 32              


Q ss_pred             --CHHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccccccccc
Q psy7914         249 --DPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDE  326 (365)
Q Consensus       249 --~~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~  326 (365)
                        .++++++++.+.+++++++||+++||++.+.|+++.|.+.++++|.+|+++|+||++.++++|||.|+|+||+.|+++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~~~t~lsd~Ev~~  180 (601)
T PF00133_consen  101 REECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPSCQTALSDHEVEY  180 (601)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGEEE
T ss_pred             hhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCcccccchhhhhccc
Confidence              146788999999999999999999999999999999999999999999999999999999999999999999999975


Q ss_pred             CC
Q psy7914         327 QG  328 (365)
Q Consensus       327 ~~  328 (365)
                      ..
T Consensus       181 ~~  182 (601)
T PF00133_consen  181 KE  182 (601)
T ss_dssp             EE
T ss_pred             cc
Confidence            44

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....

>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases

Probab=99.97  E-value=1.5e-30  Score=253.32  Aligned_cols=145  Identities=35%  Similarity=0.636  Sum_probs=139.3

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCC-------------CHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGI-------------DPREW  253 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~-------------~~~e~  253 (365)
                      +++|+++||||||+|||||+++++++|+++||+|++|++|.+++|+||||++|+.+|++.+.             ++.++
T Consensus         1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~   80 (312)
T cd00668           1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEF   80 (312)
T ss_pred             CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999887             88999


Q ss_pred             HHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCC
Q psy7914         254 TVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRS  333 (365)
Q Consensus       254 ~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~  333 (365)
                      ++++.+.|+++|++|||++||+.++.|+++.|.+.++++|.+|+++|+||++.+.+                        
T Consensus        81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v------------------------  136 (312)
T cd00668          81 VEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV------------------------  136 (312)
T ss_pred             HHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee------------------------
Confidence            99999999999999999999999999999999999999999999999999999887                        


Q ss_pred             CCccEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914         334 GARVEKRRLSQWFIRTTRLANLVSLVDS  361 (365)
Q Consensus       334 g~~~e~~~~~~~ff~Ls~~~~~L~~~~~  361 (365)
                            +.+.+|||++++|+++|.++..
T Consensus       137 ------~~~~~~f~~~~~l~~~~~~~~~  158 (312)
T cd00668         137 ------RITEQWFFDMPKFKEKLLKALR  158 (312)
T ss_pred             ------EeeeeEEEEcHHHHHHHHHHHh
Confidence                  7889999999999999988764

Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.

>PTZ00419 valyl-tRNA synthetase-like protein; Provisional

Probab=99.97  E-value=1.4e-30  Score=287.31  Aligned_cols=144  Identities=28%  Similarity=0.464  Sum_probs=133.3

Q ss_pred             CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH-----cCCCH--------
Q psy7914         184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ-----HGIDP--------  250 (365)
Q Consensus       184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~-----~g~~~--------  250 (365)
                      ++++|+|+.|||||||.|||||+++++++|+++||+||+|++|++++|+|+||++++..+++     .|.++        
T Consensus        58 ~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f  137 (995)
T PTZ00419         58 SGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEF  137 (995)
T ss_pred             CCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHH
Confidence            45679999999999999999999999999999999999999999999999999999666433     34443        


Q ss_pred             ----HHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccccccccc
Q psy7914         251 ----REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDE  326 (365)
Q Consensus       251 ----~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~  326 (365)
                          ++|++++.+.|+++|++||+++||++++.|+|+.|.+.++++|.+|+++|+||++.++|+|||.|+|+||+.||++
T Consensus       138 ~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~  217 (995)
T PTZ00419        138 LKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEF  217 (995)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhccc
Confidence                5678999999999999999999999999999999999999999999999999999999999999999999999975


Q ss_pred             C
Q psy7914         327 Q  327 (365)
Q Consensus       327 ~  327 (365)
                      .
T Consensus       218 ~  218 (995)
T PTZ00419        218 E  218 (995)
T ss_pred             c
Confidence            4

>PLN02843 isoleucyl-tRNA synthetase

Probab=99.97  E-value=3e-30  Score=283.14  Aligned_cols=142  Identities=29%  Similarity=0.582  Sum_probs=132.5

Q ss_pred             CceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc-------CCCH-------H
Q psy7914         186 DNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH-------GIDP-------R  251 (365)
Q Consensus       186 ~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~-------g~~~-------~  251 (365)
                      ++|+|+++|||+||.|||||+++.+++|+++||+||+|++|.+++|+|+||+||+.++++.       ++++       +
T Consensus        32 ~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~  111 (974)
T PLN02843         32 ESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAA  111 (974)
T ss_pred             CCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHH
Confidence            4699999999999999999999999999999999999999999999999999999988542       2344       4


Q ss_pred             HHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccC
Q psy7914         252 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQ  327 (365)
Q Consensus       252 e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~  327 (365)
                      +|+.++.+.|++++++||++.||++.+.|+++.|...++++|.+|+++|+||++.++|+|||.|+|+||+.||++.
T Consensus       112 ~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr~~kpV~Wcp~~~Talae~Evey~  187 (974)
T PLN02843        112 KFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALAEAELEYP  187 (974)
T ss_pred             HHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCcchHhHhccc
Confidence            4578888999999999999999999999999999999999999999999999999999999999999999999865

>PLN02882 aminoacyl-tRNA ligase

Probab=99.97  E-value=3.4e-30  Score=285.95  Aligned_cols=142  Identities=26%  Similarity=0.449  Sum_probs=133.1

Q ss_pred             CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH-cCCC-------------
Q psy7914         184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ-HGID-------------  249 (365)
Q Consensus       184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~-~g~~-------------  249 (365)
                      ++++|++.++|||+||.||+||+++++++|+++||.||+||+|.+.+||||||+||+..+++ .|++             
T Consensus        36 ~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f  115 (1159)
T PLN02882         36 GLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKY  115 (1159)
T ss_pred             CCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999864 4543             


Q ss_pred             ---HHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc
Q psy7914         250 ---PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD  325 (365)
Q Consensus       250 ---~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve  325 (365)
                         +++++.++.+.+++++++||+++||++.+.|+++.|.+.++++|.+|+++|+||++.++++|||.|+|+||+.|++
T Consensus       116 ~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr~~~~v~wcp~~~TaLs~~E~~  194 (1159)
T PLN02882        116 NEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVMPYSTACKTPLSNFEAG  194 (1159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeEeecCCCCCCcchhhhh
Confidence               3567899999999999999999999999999999999999999999999999999999999999999999988874

>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family

Probab=99.97  E-value=6.9e-30  Score=279.91  Aligned_cols=142  Identities=27%  Similarity=0.510  Sum_probs=133.8

Q ss_pred             CCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc---------------C--
Q psy7914         185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH---------------G--  247 (365)
Q Consensus       185 ~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~---------------g--  247 (365)
                      +++++|+.||||+||.||+||+++++++|+++||+||+|++|++.+|+|+||+||+..|++.               +  
T Consensus        24 ~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~~~~~i~  103 (938)
T TIGR00395        24 REKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIP  103 (938)
T ss_pred             CCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhhccccchhhccCC
Confidence            45799999999999999999999999999999999999999999999999999999888662               1  


Q ss_pred             -------CCHHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccc
Q psy7914         248 -------IDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLA  320 (365)
Q Consensus       248 -------~~~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls  320 (365)
                             .+|++|++++...++++|++||+++||++.+.|+||.|.+.|++.|.+|+++|+||++.++++|||.|+|+|+
T Consensus       104 ~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~e~G~iy~g~~~v~wcp~~~t~ls  183 (938)
T TIGR00395       104 REELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKGEHPVRYCPKDGNPVE  183 (938)
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHHHCCCEecCCeeEeecCCCCCCCc
Confidence                   3467788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccc
Q psy7914         321 DEQVDE  326 (365)
Q Consensus       321 ~~eve~  326 (365)
                      +.|++.
T Consensus       184 d~e~~~  189 (938)
T TIGR00395       184 DHDLLS  189 (938)
T ss_pred             hhHhcc
Confidence            999963

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.

>PTZ00427 isoleucine-tRNA ligase, putative; Provisional

Probab=99.97  E-value=5.4e-30  Score=284.05  Aligned_cols=141  Identities=21%  Similarity=0.384  Sum_probs=132.2

Q ss_pred             CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH-cCC--------------
Q psy7914         184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ-HGI--------------  248 (365)
Q Consensus       184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~-~g~--------------  248 (365)
                      ++++|++..||||+||.||+||+++.+++|+++||+||+||+|.+.+|||+||+||+..+++ .|+              
T Consensus       100 ~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f  179 (1205)
T PTZ00427        100 NKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVY  179 (1205)
T ss_pred             CCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHH
Confidence            34568889999999999999999999999999999999999999999999999999999875 232              


Q ss_pred             --CHHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccccccc
Q psy7914         249 --DPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQV  324 (365)
Q Consensus       249 --~~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~ev  324 (365)
                        .+++++.++.+.+++++++||++.||++++.|+++.|.+.++++|.+|+++|+||++.++++|||.|+|+||+.||
T Consensus       180 ~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV  257 (1205)
T PTZ00427        180 NEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKSFKVMPYSCKCNTPISNFEL  257 (1205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeccCCCCCCchhHHHh
Confidence              1367789999999999999999999999999999999999999999999999999999999999999999999999

>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=1.7e-29  Score=270.59  Aligned_cols=145  Identities=32%  Similarity=0.570  Sum_probs=135.0

Q ss_pred             CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH-cCCC-------------
Q psy7914         184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ-HGID-------------  249 (365)
Q Consensus       184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~-~g~~-------------  249 (365)
                      +++.|++.++|||+||.+|+|||.|.+++|++.||..|+||+|.+++||||||+||+.++++ .|..             
T Consensus        47 g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr  126 (933)
T COG0060          47 GKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFR  126 (933)
T ss_pred             CCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHH
Confidence            44578889999999999999999999999999999999999999999999999999999876 3421             


Q ss_pred             --HHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccC
Q psy7914         250 --PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQ  327 (365)
Q Consensus       250 --~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~  327 (365)
                        +++++.++.+.+++++++||+..||++.|.|+++.|.+.+.++|.+|+++|+||++.++++||++|+|+||++|||++
T Consensus       127 ~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~  206 (933)
T COG0060         127 EKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYG  206 (933)
T ss_pred             HHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhccc
Confidence              356788999999999999999999999999999999999999999999999999999999999999999999999975


Q ss_pred             C
Q psy7914         328 G  328 (365)
Q Consensus       328 ~  328 (365)
                      .
T Consensus       207 d  207 (933)
T COG0060         207 D  207 (933)
T ss_pred             c
Confidence            4

>PLN02959 aminoacyl-tRNA ligase

Probab=99.96  E-value=1.7e-28  Score=271.60  Aligned_cols=142  Identities=25%  Similarity=0.475  Sum_probs=127.4

Q ss_pred             CCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc-------CCC--------
Q psy7914         185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH-------GID--------  249 (365)
Q Consensus       185 ~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~-------g~~--------  249 (365)
                      +++|+++.||||+||.|||||+++++++|+++||+||+|++|++.+|+||||+||+..|++.       |..        
T Consensus        44 ~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~  123 (1084)
T PLN02959         44 GEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDE  123 (1084)
T ss_pred             CCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCcccccccc
Confidence            46799999999999999999999999999999999999999999999999999999998542       211        


Q ss_pred             -----------------------------------------------------------HHHHHHHHHHHHHHHHHhcCC
Q psy7914         250 -----------------------------------------------------------PREWTVGNIATMKSQLQGFGC  270 (365)
Q Consensus       250 -----------------------------------------------------------~~e~~~~~~~~i~~~l~~lgI  270 (365)
                                                                                 |..|++.+...++++|++||+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~  203 (1084)
T PLN02959        124 DEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGL  203 (1084)
T ss_pred             cccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCc
Confidence                                                                       111333344778999999999


Q ss_pred             CccCCCcccccC--hhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccccccccc
Q psy7914         271 KFNWESELATCD--PKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDE  326 (365)
Q Consensus       271 ~~D~~~~~~t~d--~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~  326 (365)
                      +.||.+.+.|+|  |.|...|++.|.+|+++|+||++.+++.|||.|+++|+|.|+++
T Consensus       204 ~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~~~t~ladhe~~~  261 (1084)
T PLN02959        204 GCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPLDGQPCADHDRAS  261 (1084)
T ss_pred             eEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCCCCCCchhhHHhc
Confidence            999999999999  89999999999999999999999999999999999999999974

>PRK01611 argS arginyl-tRNA synthetase; Reviewed

Probab=99.95  E-value=8.8e-28  Score=248.21  Aligned_cols=186  Identities=17%  Similarity=0.193  Sum_probs=156.1

Q ss_pred             EECCCCchhhhccccceEEEecCccccccccccccCcceeEEEccchhhhhcCCcccccCCCCcccchhhHHHHHHhhhH
Q psy7914          78 IWLPEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLKLVCDGV  157 (365)
Q Consensus        78 v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~~~gf~n~~i~n~~~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l  157 (365)
                      ..-.+|..|+.....          .+.+.++++ |||+||++....+.                        +.+...+
T Consensus        52 ~~~~~p~~ia~~i~~----------~i~~v~~~~-~gfiN~~l~~~~~~------------------------~~~~~~~   96 (507)
T PRK01611         52 KLKKNPREIAEEIVE----------AIEKVEIAG-PGFINFFLDPAALA------------------------ELVLAIL   96 (507)
T ss_pred             HcCCCHHHHHHHHHh----------heeEEEEeC-CCEEEEEECHHHHH------------------------HHHHHHH
Confidence            345688888888821          167888999 99999999998888                        4443333


Q ss_pred             HHHHhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCc
Q psy7914         158 YRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGL  237 (365)
Q Consensus       158 y~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~  237 (365)
                             ..++.||....++       +++++|++++|||||+|||||+|+++++|+++|++++.|++|.+++|+||+|.
T Consensus        97 -------~~~~~~g~~~~~~-------~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~  162 (507)
T PRK01611         97 -------EAGERYGRSDIGK-------GKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGT  162 (507)
T ss_pred             -------hchhhcCCCcCCC-------CCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccH
Confidence                   3455677643222       23689999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEE-EeCcceeecCC
Q psy7914         238 PAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVY-RKEATVNWDPI  314 (365)
Q Consensus       238 ~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy-~~~~~v~yc~~  314 (365)
                      ||...+.+.+..++++++.+.+.|+++|++|||.+|  .+.++++..+.+.+.+++++|.++|++| +.++.+|++..
T Consensus       163 qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~LgI~~D--~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~  238 (507)
T PRK01611        163 QIGMLIASLELLWRKAVDISLDEIKEDLDRLGVHFD--VWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLT  238 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee--EEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEch
Confidence            999999888878888999999999999999999999  4455666666778999999999999999 99999988753

>KOG0432|consensus

Probab=99.93  E-value=2.7e-25  Score=232.14  Aligned_cols=186  Identities=27%  Similarity=0.415  Sum_probs=152.8

Q ss_pred             cccccCCCCcccchhhHHHHH-HhhhHHHHHhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHH
Q psy7914         132 PMLRDRKKPVCGESLNQVLKL-VCDGVYRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYT  210 (365)
Q Consensus       132 p~~r~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v  210 (365)
                      ++.+...+.+....+..|... ++...|.||..    +.|.+.+.+.     .....|.+..||||+||.||||||.+.+
T Consensus        29 ~t~~ge~k~~~~~~~~~y~p~~vE~~wy~ww~k----~g~fkp~~~~-----~~~~~f~i~~PPPNVTG~LHiGHALt~a   99 (995)
T KOG0432|consen   29 STAPGEKKDLSGPLPAAYSPAYVESAWYKWWEK----QGFFKPEYGP-----NPGGVFVIPLPPPNVTGSLHIGHALTVA   99 (995)
T ss_pred             CCCcchhhccCCcccccCCccchHHHHHHHHHH----cCCCCcccCC-----CCCCcceeecCCCCcccccchhHHHHHH
Confidence            344444444555555555443 77788989833    3444443331     1123578889999999999999999999


Q ss_pred             HhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH-----cCCC------------HHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914         211 ISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ-----HGID------------PREWTVGNIATMKSQLQGFGCKFN  273 (365)
Q Consensus       211 ~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~-----~g~~------------~~e~~~~~~~~i~~~l~~lgI~~D  273 (365)
                      +.|+++||.||.|+.|++++|+|++|..++...++     .|++            .++|.+++...|.++|++||.++|
T Consensus       100 iqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~D  179 (995)
T KOG0432|consen  100 IQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLD  179 (995)
T ss_pred             HHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCccc
Confidence            99999999999999999999999999877766654     2232            367889999999999999999999


Q ss_pred             CCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccccccccc
Q psy7914         274 WESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDE  326 (365)
Q Consensus       274 ~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~  326 (365)
                      |+++++|+|+.....|.+.|.+|+++|+||+..+.|.||+...+++||.||++
T Consensus       180 W~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~  232 (995)
T KOG0432|consen  180 WDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVES  232 (995)
T ss_pred             ccHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhheecc
Confidence            99999999999999999999999999999999999999999999999999974

>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=9.8e-26  Score=234.15  Aligned_cols=191  Identities=19%  Similarity=0.242  Sum_probs=154.9

Q ss_pred             EEECCCCchhhhccccceEEEecCccccccccccccCcceeEEEccchhhhhcCCcccccCCCCcccchhhHHHHHHhhh
Q psy7914          77 SIWLPEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLKLVCDG  156 (365)
Q Consensus        77 ~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~~~gf~n~~i~n~~~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~  156 (365)
                      .+--++|..|+...    ...+..+..+.+++++| ||||||++.+.++.                        +.+...
T Consensus        50 K~~~~~P~eiA~~i----~~~l~~~~~~~~veiaG-pgfINf~l~~~~~~------------------------~~~~~~  100 (577)
T COG0018          50 KKLGKNPREIAEEI----AEKLDTDEIIEKVEIAG-PGFINFFLSPEFLA------------------------ELLLEI  100 (577)
T ss_pred             hhcCCCHHHHHHHH----HHhccccCcEeEEEEcC-CCEEEEEECHHHHH------------------------HHHHHH
Confidence            44567899999999    77777766788999999 99999999999998                        666555


Q ss_pred             HHHHHhhcCC-CCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCC
Q psy7914         157 VYRRRRSISS-PSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAF  235 (365)
Q Consensus       157 ly~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~  235 (365)
                      +       .. ++.||....++++       +++|++.||||||||||||+|++|+||+++|.|++.||+|.+++++||+
T Consensus       101 l-------~~~~~~~G~~~~~~~~-------kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~  166 (577)
T COG0018         101 L-------EKGDDRYGRSKLGKGK-------KVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDW  166 (577)
T ss_pred             H-------HhcccccCccccCCCC-------EEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcH
Confidence            5       22 4567777666554       7999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHH--------c-------------------------CCC-H-------------HH------HHHHHHHHHH
Q psy7914         236 GLPAENAAHQ--------H-------------------------GID-P-------------RE------WTVGNIATMK  262 (365)
Q Consensus       236 G~~I~~~A~~--------~-------------------------g~~-~-------------~e------~~~~~~~~i~  262 (365)
                      |.||...+..        .                         +.+ .             ..      +++..+..|+
T Consensus       167 G~Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k  246 (577)
T COG0018         167 GTQIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIK  246 (577)
T ss_pred             HHHHHHHHHHHHHhccccccCCCCcchHHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            9999877621        0                         100 0             11      5677889999


Q ss_pred             HHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeec
Q psy7914         263 SQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWD  312 (365)
Q Consensus       263 ~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc  312 (365)
                      ++|.+|||.||  .+.+..+..+...+.++++.|.++|++|+.+++.+.+
T Consensus       247 ~~l~~l~V~fD--~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vd  294 (577)
T COG0018         247 ETLDRLGVKFD--VYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVD  294 (577)
T ss_pred             HHHHHhCcccc--eeeccchhhhcccHHHHHHHHHhcCCEeeeCCeEEEe
Confidence            99999999999  3334444445557899999999999999988887433

>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases

Probab=99.92  E-value=2.6e-25  Score=205.48  Aligned_cols=131  Identities=19%  Similarity=0.194  Sum_probs=116.7

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      +++|+++||||||+|||||+|+++++|+++|++++.|++|.+++|+||+|.||...|.+.+. +.++++.+.+.++++++
T Consensus         1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~-~~~~~~~~~~~~~~~~~   79 (212)
T cd00671           1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEK-WRKLVEESIKADLETYG   79 (212)
T ss_pred             CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            37889999999999999999999999999999999999999999999999999999976643 78999999999999999


Q ss_pred             hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccccc
Q psy7914         267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADE  322 (365)
Q Consensus       267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~  322 (365)
                      +|||.+|  .+.++++.  ...+.++++.|.++|++|+.++.+|+|+.+...+++.
T Consensus        80 ~L~i~~d--~~~~es~~--~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~~~~~d~  131 (212)
T cd00671          80 RLDVRFD--VWFGESSY--LGLMGKVVELLEELGLLYEEDGALWLDLTEFGDDKDR  131 (212)
T ss_pred             HhCCcCc--eecchhhh--hhHHHHHHHHHHHCCCEEEeCCcEEEechhhCCCCCe
Confidence            9999999  44455543  7789999999999999999999999998766544443

Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.

>PRK12300 leuS leucyl-tRNA synthetase; Reviewed

Probab=99.91  E-value=8.8e-25  Score=238.87  Aligned_cols=126  Identities=34%  Similarity=0.575  Sum_probs=119.1

Q ss_pred             CchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc---------------CC---------CHHHHHHH
Q psy7914         201 LHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH---------------GI---------DPREWTVG  256 (365)
Q Consensus       201 LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~---------------g~---------~~~e~~~~  256 (365)
                      ||+||+++++++|+++||+||+|++|++.+|+|+||+||+..|++.               |+         +|++|+++
T Consensus         1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~   80 (897)
T PRK12300          1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY   80 (897)
T ss_pred             CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence            7999999999999999999999999999999999999999987542               33         45788999


Q ss_pred             HHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccccccccc
Q psy7914         257 NIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDE  326 (365)
Q Consensus       257 ~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~  326 (365)
                      +.+.+++++++||+++||++.+.|+||.|.+.+++.|.+|+++|+||++.+++.|||.|+|+|++.|++.
T Consensus        81 ~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~  150 (897)
T PRK12300         81 FSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLD  150 (897)
T ss_pred             hHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999964

>KOG1247|consensus

Probab=99.91  E-value=7.4e-25  Score=213.50  Aligned_cols=182  Identities=21%  Similarity=0.260  Sum_probs=170.2

Q ss_pred             cCCCCCCCceEEEecCCCCCCCCchHHHHH-HHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHH
Q psy7914         179 LEGKRREDNFYVLSMFPYPSGSLHMGHVRV-YTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGN  257 (365)
Q Consensus       179 ~~~~~~~~~~~I~~~~PnpnG~LHiGHar~-~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~  257 (365)
                      ..|..++++++|+.+.||+|..+|+|++-+ ...+|++|||.+.+|+...+++|+|+.|..++..|.+.|++|+++++++
T Consensus         7 ilp~~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elcdKy   86 (567)
T KOG1247|consen    7 ILPAPNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELCDKY   86 (567)
T ss_pred             cccCCCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHHHhc
Confidence            345567788999999999999999999998 5569999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc------------
Q psy7914         258 IATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD------------  325 (365)
Q Consensus       258 ~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve------------  325 (365)
                      ...++..++|++|.||  .+-+|+.+...++++.+|.+|+++|++-+....+.||..|+++|++++|+            
T Consensus        87 h~ihk~vy~Wf~IdfD--~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~AR  164 (567)
T KOG1247|consen   87 HGIHKVVYDWFKIDFD--EFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDDAR  164 (567)
T ss_pred             chhHHHHHHhhccccc--ccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCCCCCcccc
Confidence            9999999999999888  67788888899999999999999999999999999999999999999986            


Q ss_pred             ----------------cCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhcc
Q psy7914         326 ----------------EQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDSV  362 (365)
Q Consensus       326 ----------------~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~~  362 (365)
                                      .+++|.+|...++.+...|+||.|++++++|.+|.-.
T Consensus       165 GDqcd~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~  217 (567)
T KOG1247|consen  165 GDQCDKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRR  217 (567)
T ss_pred             chhhhhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHh
Confidence                            2468999999999999999999999999999999754

>PRK12451 arginyl-tRNA synthetase; Reviewed

Probab=99.89  E-value=6.8e-23  Score=214.02  Aligned_cols=186  Identities=12%  Similarity=0.104  Sum_probs=143.3

Q ss_pred             ECCCCchhhhccccceEEEecCccccccccccccCcceeEEEccchhhhhcCCcccccCCCCcccchhhHHHHH-HhhhH
Q psy7914          79 WLPEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLKL-VCDGV  157 (365)
Q Consensus        79 ~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~~~gf~n~~i~n~~~~~~~~~p~~r~~~~~~~~~~~~~~~~~-~~~~l  157 (365)
                      .-++|..|+...    .-.+..+ .+.+.++++ | ||||++.+..+.                        .. ....+
T Consensus        50 ~~~~P~~iA~~i----~~~l~~~-~i~~ve~~g-~-fiN~~l~~~~~~------------------------~~~~~~~~   98 (562)
T PRK12451         50 YKKAPAIIAKEV----AEKLSDP-FFTKVEAVG-P-YVNVFFNRETVS------------------------DAVLKTIL   98 (562)
T ss_pred             cCCCHHHHHHHH----HHhcccc-ccceeEeeC-C-EEEEEECHHHHH------------------------HHHHHHHH
Confidence            457899998888    5555433 477889998 5 999999999986                        33 22333


Q ss_pred             HHHHhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCc
Q psy7914         158 YRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGL  237 (365)
Q Consensus       158 y~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~  237 (365)
                             ..++.||....++       +++++|.+.||||||||||||+|++++||+++|+++..||+|.+++|+||+|.
T Consensus        99 -------~~~~~~g~~~~~~-------~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~  164 (562)
T PRK12451         99 -------AEKEEYGQNHFGC-------EKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGT  164 (562)
T ss_pred             -------hhHhhcCCCccCC-------CCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchH
Confidence                   3345577543222       23689999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHH---cCCC-------------------------------------------H------HHHHHHHHHHHHHHH
Q psy7914         238 PAENAAHQ---HGID-------------------------------------------P------REWTVGNIATMKSQL  265 (365)
Q Consensus       238 ~I~~~A~~---~g~~-------------------------------------------~------~e~~~~~~~~i~~~l  265 (365)
                      |+...+..   .|..                                           +      +.+++..++.|+++|
T Consensus       165 Q~~~l~~~~~~~~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~  244 (562)
T PRK12451        165 QFGKLITAYKKWGNEAVVKEDPIRELFKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIY  244 (562)
T ss_pred             HHHHHHHHHHHhCCccccccCchHHHHHHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99877722   1100                                           0      122577789999999


Q ss_pred             HhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecC
Q psy7914         266 QGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDP  313 (365)
Q Consensus       266 ~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~  313 (365)
                      ++|||.|||+.    .+..|...+.+++++|.++|++|+.+++.|.+.
T Consensus       245 ~~l~V~fD~~~----~es~~~~~~~~v~~~L~~~g~~~e~dGa~~~~~  288 (562)
T PRK12451        245 ELLGVEFTNFQ----GEAFYNDLMEDFIGILEEHDLLEESEGALVVNL  288 (562)
T ss_pred             HHcCCCceeec----chHhhhhhHHHHHHHHHHCCCEEecCCeEEEEe
Confidence            99999999332    223455667999999999999999999998664

>PLN02286 arginine-tRNA ligase

Probab=99.89  E-value=5.9e-23  Score=214.90  Aligned_cols=184  Identities=15%  Similarity=0.104  Sum_probs=142.4

Q ss_pred             CCCchhhhccccceEEEecCccccccccccccCcceeEEEccchhhhhcCCcccccCCCCcccchhhHHHHHHhhhHHHH
Q psy7914          81 PEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLKLVCDGVYRR  160 (365)
Q Consensus        81 ~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~~~gf~n~~i~n~~~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~ly~~  160 (365)
                      ++|..|+...    .-.+..+..+.+.++++ ||||||+|.+..+.                        +.+...+   
T Consensus        56 k~P~~iA~~i----~~~l~~~~~i~~v~vag-pGfiNf~l~~~~l~------------------------~~l~~~~---  103 (576)
T PLN02286         56 KNPRAVAQAI----VKNLPASEMIESTSVAG-PGFVNVRLSASWLA------------------------KRIERML---  103 (576)
T ss_pred             CCHHHHHHHH----HHhCccccceeeEEEcC-CCeEEEEECHHHHH------------------------HHHHHHH---
Confidence            6799999888    55555544478899999 99999999999988                        5444433   


Q ss_pred             HhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHH
Q psy7914         161 RRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAE  240 (365)
Q Consensus       161 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~  240 (365)
                          ..+..||...        .++++++|++.||||||||||||+|++++||+|+|+++..||+|.+++|+||+|.||.
T Consensus       104 ----~~~~~~g~~~--------~~~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~  171 (576)
T PLN02286        104 ----VDGIDTWAPT--------LPVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFG  171 (576)
T ss_pred             ----HcCcccCCCC--------CCCceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHH
Confidence                2334454211        1124799999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHc----CC----C---------------------H------------------------HHHHHHHHHHHHHHHHh
Q psy7914         241 NAAHQH----GI----D---------------------P------------------------REWTVGNIATMKSQLQG  267 (365)
Q Consensus       241 ~~A~~~----g~----~---------------------~------------------------~e~~~~~~~~i~~~l~~  267 (365)
                      ..+...    +.    .                     +                        +.+++.....|++++++
T Consensus       172 ~l~~~~~~~~~~~~~~~~~~i~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~  251 (576)
T PLN02286        172 MLIEHLFEKFPNWESVSDQAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQR  251 (576)
T ss_pred             HHHHHHHHhcCcccccCcccHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777321    10    0                     0                        12346667889999999


Q ss_pred             cCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecC
Q psy7914         268 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDP  313 (365)
Q Consensus       268 lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~  313 (365)
                      |||.||.     .-+..|...+.++++.|.++|++|+.++..|.+-
T Consensus       252 l~V~fd~-----~ges~y~~~~~~vi~~L~~~g~~~e~dGa~~v~l  292 (576)
T PLN02286        252 LRVELEE-----KGESFYNPYIPGVIEELESKGLVVESDGARVIFV  292 (576)
T ss_pred             hCCeeee-----cCchhhhhhHHHHHHHHHHCCCEEeeCCceEeec
Confidence            9999982     1233455667999999999999999999998643

>TIGR00456 argS arginyl-tRNA synthetase

Probab=99.88  E-value=1.6e-22  Score=211.58  Aligned_cols=188  Identities=18%  Similarity=0.237  Sum_probs=145.0

Q ss_pred             EECCCCchhhhccccceEEEecCccccccccccccCcceeEEEccchhhhhcCCcccccCCCCcccchhhHHHHHHhhhH
Q psy7914          78 IWLPEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLKLVCDGV  157 (365)
Q Consensus        78 v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~~~gf~n~~i~n~~~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l  157 (365)
                      ..-++|..|+...    ...+..+..+.+.++++ | ||||++.+..+.                       ..+....+
T Consensus        48 ~~~~~P~~iA~~i----~~~l~~~~~i~~ve~~g-p-fiN~~l~~~~~~-----------------------~~~~~~~~   98 (566)
T TIGR00456        48 VLKKNPRAIAEEI----VLKLKTGEIIEKVEAAG-P-FINFFLSPQKLL-----------------------ERLIQKIL   98 (566)
T ss_pred             HcCCCHHHHHHHH----HHhCCCcCcEeEEEEeC-C-EEEEEEcHHHHH-----------------------HHHHHHHH
Confidence            4557899999888    66666555578899999 6 999999986655                       02233333


Q ss_pred             HHHHhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCc
Q psy7914         158 YRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGL  237 (365)
Q Consensus       158 y~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~  237 (365)
                             ..++.||....+        +++++|++++|||+|||||||+|+++++|+++|++++.||+|.+++++||+|.
T Consensus        99 -------~~~~~~g~~~~~--------~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~  163 (566)
T TIGR00456        99 -------TQKEDYGSKKLK--------NKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGR  163 (566)
T ss_pred             -------hcccccCCCCCC--------CCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHH
Confidence                   345668754332        23689999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHH---cC--------CCH-------------------------------------------HHHHHHHHHHHHH
Q psy7914         238 PAENAAHQ---HG--------IDP-------------------------------------------REWTVGNIATMKS  263 (365)
Q Consensus       238 ~I~~~A~~---~g--------~~~-------------------------------------------~e~~~~~~~~i~~  263 (365)
                      |+...+..   .+        ..|                                           +.+++..++.|++
T Consensus       164 Q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~  243 (566)
T TIGR00456       164 QFGLLALGVEKFGNEKLNEAVKKPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKE  243 (566)
T ss_pred             HHHHHHHHHHHhCCccccCcccCChHHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99877722   00        000                                           1235778899999


Q ss_pred             HHHhcCCCcc-CCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecC
Q psy7914         264 QLQGFGCKFN-WESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDP  313 (365)
Q Consensus       264 ~l~~lgI~~D-~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~  313 (365)
                      +|++|||.|| |+.+   .+..+...+..++++|.++|++|++ +++|.+.
T Consensus       244 ~~~~l~V~fD~~~~E---~e~~~~~~~~~v~~~L~~~g~~~~~-Ga~~~~~  290 (566)
T TIGR00456       244 TLARLNIHFDSFVWE---GESVKNGMVPKVLEDLKEKGLVVED-GALWLDL  290 (566)
T ss_pred             HHHHcCCceeeeecc---ccccccccHHHHHHHHHHCCCEEEc-CCEEEEc
Confidence            9999999999 5433   3333455678999999999999988 8888764

This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.

>PRK00260 cysS cysteinyl-tRNA synthetase; Validated

Probab=99.88  E-value=4.8e-22  Score=203.40  Aligned_cols=125  Identities=19%  Similarity=0.193  Sum_probs=113.3

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG  267 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~  267 (365)
                      +-+....|+|+|++||||+|+++.+|+++||+|+.|++|.+++|+||+|.+|...|++.|.+|.++++.+.+.|++++++
T Consensus        24 v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~~~  103 (463)
T PRK00260         24 VKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDMDA  103 (463)
T ss_pred             ceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            44555688899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC-CccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCC
Q psy7914         268 FGC-KFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDN  316 (365)
Q Consensus       268 lgI-~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~  316 (365)
                      ||| ..||+  .+++  .|...+.+++++|.++|++|+++++|+||++.-
T Consensus       104 Lgi~~~d~~--~r~t--~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~  149 (463)
T PRK00260        104 LNVLPPDIE--PRAT--EHIPEIIELIERLIDKGHAYEADGDVYFDVRKF  149 (463)
T ss_pred             cCCCCCCcc--cccc--ccHHHHHHHHHHHHHCCCEEEecCeEEEecccc
Confidence            999 45643  2333  478889999999999999999999999999864

>TIGR00435 cysS cysteinyl-tRNA synthetase

Probab=99.87  E-value=8.1e-22  Score=201.67  Aligned_cols=126  Identities=17%  Similarity=0.106  Sum_probs=114.4

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG  267 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~  267 (365)
                      +-+....|+|+|++||||+|++|.+|+++||||++||+|.++.|+||+|.+|...|.+.|++|.++++.+.+.|++++++
T Consensus        22 v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~  101 (465)
T TIGR00435        22 VKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKA  101 (465)
T ss_pred             ceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            44555567999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeC-cceeecCCCC
Q psy7914         268 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE-ATVNWDPIDN  316 (365)
Q Consensus       268 lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~-~~v~yc~~~~  316 (365)
                      |||.+|.. +.+++  .|...+.+++++|.++|++|+.+ +.+|||+.|.
T Consensus       102 LgI~~d~~-~~raT--~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~  148 (465)
T TIGR00435       102 LNVLPPDL-EPRAT--EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKF  148 (465)
T ss_pred             hCCCCCcC-Ccccc--ccHHHHHHHHHHHHHCCCEEEecCCcEEEecccc
Confidence            99999822 12232  68899999999999999999999 9999999885

This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).

>KOG0433|consensus

Probab=99.87  E-value=1.7e-21  Score=200.62  Aligned_cols=133  Identities=30%  Similarity=0.552  Sum_probs=123.3

Q ss_pred             CCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHH-HHHHH------cCCCH-------HHHHHHHHHHHH
Q psy7914         197 PSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAE-NAAHQ------HGIDP-------REWTVGNIATMK  262 (365)
Q Consensus       197 pnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~-~~A~~------~g~~~-------~e~~~~~~~~i~  262 (365)
                      +||.||+|||++.|+.|++.|++.++|..|++++|+||||+||+ .+|.+      ..++|       +.+|++.++.++
T Consensus        66 anG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~~~~s~leiR~~Ar~fA~~AIk~Q~  145 (937)
T KOG0433|consen   66 ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIRAKARIFADEAIKKQM  145 (937)
T ss_pred             cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999 56643      23455       346788899999


Q ss_pred             HHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCC
Q psy7914         263 SQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGI  329 (365)
Q Consensus       263 ~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~  329 (365)
                      +.++++||..||...|.|++|.|.....++|.+|+++|+||++..+|||+|+..|+|+++|+|||..
T Consensus       146 e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn~n  212 (937)
T KOG0433|consen  146 EAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYNDN  212 (937)
T ss_pred             HHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcchhhhhhhhccCCcC
Confidence            9999999999999999999999999999999999999999999999999999999999999998763

>PRK12418 cysteinyl-tRNA synthetase; Provisional

Probab=99.86  E-value=3.1e-21  Score=192.01  Aligned_cols=127  Identities=17%  Similarity=0.196  Sum_probs=115.4

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      ++-+....|+|.+++||||+|++|.+|+++||||+.|++|.+++|+||+|++|...|++.|++|+++++.+.+.+.++++
T Consensus         9 ~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~   88 (384)
T PRK12418          9 TATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDME   88 (384)
T ss_pred             eeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            34555667778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCC-CccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCc----ceeecCCCCc
Q psy7914         267 GFGC-KFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEA----TVNWDPIDNT  317 (365)
Q Consensus       267 ~lgI-~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~----~v~yc~~~~t  317 (365)
                      +||| .+|  .+.++++  +.+.+++++++|.++|++|++.+    .|||+++.-.
T Consensus        89 ~Lni~~~~--~~~raTe--~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~  140 (384)
T PRK12418         89 ALRVLPPR--DYVGAVE--SIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDATP  140 (384)
T ss_pred             HhCCCCCC--ccccCCC--CHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCchh
Confidence            9997 566  5666776  48999999999999999999999    8999987643

>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase

Probab=99.85  E-value=4.8e-21  Score=191.72  Aligned_cols=125  Identities=18%  Similarity=0.206  Sum_probs=112.1

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG  267 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~  267 (365)
                      +-+....|+|.+++||||+|++|.+|+++||+|+.|++|.+++|+||||++|...|++.|++|+++++.+.+.+++++++
T Consensus        37 v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~  116 (411)
T TIGR03447        37 AGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEA  116 (411)
T ss_pred             ceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            44444466666999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCC-ccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCc----ceeecCCCC
Q psy7914         268 FGCK-FNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEA----TVNWDPIDN  316 (365)
Q Consensus       268 lgI~-~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~----~v~yc~~~~  316 (365)
                      |||. +|  .+.++++.  .+.+.+++++|.++|++|+.++    .|||+++.-
T Consensus       117 Lni~~~d--~~~RaTe~--i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~  166 (411)
T TIGR03447       117 LRVLPPR--DYIGAVES--IDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEAT  166 (411)
T ss_pred             cCCCCCC--cccCCCCC--HHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccch
Confidence            9986 55  55666664  7899999999999999999987    799998753

Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.

>PLN02946 cysteine-tRNA ligase

Probab=99.85  E-value=5.7e-21  Score=197.41  Aligned_cols=125  Identities=18%  Similarity=0.168  Sum_probs=118.3

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG  267 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~  267 (365)
                      +-+...-|+|.+++||||+|++|..|+++|||++.||+|.++.|+||+|++|...|.+.|++|.++++.+.+.|.+++++
T Consensus        81 v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~~~  160 (557)
T PLN02946         81 VGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDMAY  160 (557)
T ss_pred             eeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            44555589999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCC
Q psy7914         268 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPID  315 (365)
Q Consensus       268 lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~  315 (365)
                      |||. +  .++.|....|...+.+++++|+++|++|+.++.||||++.
T Consensus       161 LnI~-~--p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~  205 (557)
T PLN02946        161 LHCL-P--PSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK  205 (557)
T ss_pred             CCCC-C--CCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc
Confidence            9998 4  5677888899999999999999999999999999999985

>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional

Probab=99.83  E-value=4.9e-20  Score=188.48  Aligned_cols=126  Identities=21%  Similarity=0.158  Sum_probs=116.0

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEecc----------CCCCCCchHHHHHHHcCCCHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPM----------GWDAFGLPAENAAHQHGIDPREWTVG  256 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~----------g~Dd~G~~I~~~A~~~g~~~~e~~~~  256 (365)
                      ++-+...-|+|++++||||+|++|..|+++||+++.|++|.+++          |+|+||.+|...|++.|++|.++++.
T Consensus        23 ~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~~  102 (490)
T PRK14536         23 HVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAH  102 (490)
T ss_pred             ceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHHH
Confidence            45666679999999999999999999999999999999999997          77777999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCC
Q psy7914         257 NIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPID  315 (365)
Q Consensus       257 ~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~  315 (365)
                      +.+.+.+++++|||.++  .++ +..+.|...+.+++++|.++|++|+..+.||||+..
T Consensus       103 ~~~~f~~d~~~Lni~~~--~~~-~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~  158 (490)
T PRK14536        103 YTAAFFRDTARLNIERP--SIV-CNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT  158 (490)
T ss_pred             HHHHHHHHHHHcCCCCC--cee-cCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc
Confidence            99999999999999986  333 566889999999999999999999999999999964

>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional

Probab=99.83  E-value=6.1e-20  Score=191.55  Aligned_cols=127  Identities=17%  Similarity=0.137  Sum_probs=117.9

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      ++-+...-|+|.+++||||+|++|..|+++|||++.|++|.++.|+||+|.+|...|++.|+++.++++.+.+.+.++++
T Consensus       248 ~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d~~  327 (699)
T PRK14535        248 NVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDAD  327 (699)
T ss_pred             ceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            45556669999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEe-CcceeecCCCC
Q psy7914         267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK-EATVNWDPIDN  316 (365)
Q Consensus       267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~-~~~v~yc~~~~  316 (365)
                      +|||..+  . +.+....|...+.+++++|.++|++|++ .+.||||+++-
T Consensus       328 ~LnI~~p--~-~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f  375 (699)
T PRK14535        328 ALGVLRP--D-IEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREF  375 (699)
T ss_pred             HcCCCCC--c-EeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccc
Confidence            9999987  3 3567779999999999999999999987 56899999864

>KOG0434|consensus

Probab=99.82  E-value=3.5e-20  Score=189.62  Aligned_cols=143  Identities=24%  Similarity=0.434  Sum_probs=131.5

Q ss_pred             CCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH-cCCC------------
Q psy7914         183 RREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ-HGID------------  249 (365)
Q Consensus       183 ~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~-~g~~------------  249 (365)
                      ++++++...++||.+||-+|-||+...++.|++.||.-+.||.|.+.+|||+||+|++....+ .|++            
T Consensus        35 k~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~k  114 (1070)
T KOG0434|consen   35 KGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLGITGRDDVMKMGIDK  114 (1070)
T ss_pred             CCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeecccccCCCccceeechhcCCCCHHHHHHHhHHh
Confidence            456778888999999999999999999999999999999999999999999999999987754 4543            


Q ss_pred             ----HHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc
Q psy7914         250 ----PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD  325 (365)
Q Consensus       250 ----~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve  325 (365)
                          ++.++-.+..++++...+||-+.||++-|.|+.|.+.+.|+++|++|+++|++|++-+-+.|+..|.|+||+-|..
T Consensus       115 YN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~~kglVYRG~kVMP~STac~TPLSNFEa~  194 (1070)
T KOG0434|consen  115 YNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELHEKGLVYRGFKVMPYSTACTTPLSNFEAQ  194 (1070)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHHhcCceecceeeeccccccCCcccchhcc
Confidence                3556788899999999999999999999999999999999999999999999999999999999999999998764

>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6

Probab=99.80  E-value=1.5e-19  Score=179.12  Aligned_cols=126  Identities=25%  Similarity=0.301  Sum_probs=97.8

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH--------c------------
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ--------H------------  246 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~--------~------------  246 (365)
                      +++|+++||||||||||||+|++++||+++|+++..||+|.++++++|+|.||...+..        .            
T Consensus        21 kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l~~~  100 (354)
T PF00750_consen   21 KVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKHLEDL  100 (354)
T ss_dssp             EEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHHHHHH
T ss_pred             EEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccchhhh
Confidence            79999999999999999999999999999999999999999999999999999877721        0            


Q ss_pred             -----------CC------C------------------HHHHH-HHHHHHHHHHHHhcCCCcc-CCCcccccChhhHHHH
Q psy7914         247 -----------GI------D------------------PREWT-VGNIATMKSQLQGFGCKFN-WESELATCDPKYYKWT  289 (365)
Q Consensus       247 -----------g~------~------------------~~e~~-~~~~~~i~~~l~~lgI~~D-~~~~~~t~d~~~~~~v  289 (365)
                                 ..      .                  ..++. ..+.+.++++|++|++.+| |+.+   .+..+...+
T Consensus       101 Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~~~E---~Es~~~~~v  177 (354)
T PF00750_consen  101 YVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVWFDE---SESFYSGKV  177 (354)
T ss_dssp             HHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEEEEH---CHHHHTTHH
T ss_pred             hhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccc---chhhhhhHH
Confidence                       00      0                  01123 3378899999999999999 5433   444566778


Q ss_pred             HHHHHHHHHCCCEEEeCcceeecCCC
Q psy7914         290 QALFLDLYHAGLVYRKEATVNWDPID  315 (365)
Q Consensus       290 ~~~f~~L~~kG~Iy~~~~~v~yc~~~  315 (365)
                      .+++++|.++|++|+.+++.|.....
T Consensus       178 ~~vl~~L~e~g~~~~~dGa~~i~~~~  203 (354)
T PF00750_consen  178 DEVLERLKEKGLLYESDGALWIDLTK  203 (354)
T ss_dssp             HHHHHHHHCTTTEEEETTEEEEEGCC
T ss_pred             HHHHHHHHhCCcEEecCCcEEEechh
Confidence            99999999999999999999987653

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.

>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional

Probab=99.80  E-value=6.6e-19  Score=179.54  Aligned_cols=127  Identities=17%  Similarity=0.142  Sum_probs=114.7

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEe---------ccCC-CCCCchHHHHHHHcCCCHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQ---------PMGW-DAFGLPAENAAHQHGIDPREWTVG  256 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~---------~~g~-Dd~G~~I~~~A~~~g~~~~e~~~~  256 (365)
                      ++-+...-|+|..++||||+|++|..|+++|||++.|++|.+         .+|+ |+||.+|...|++.|+++.++++.
T Consensus        21 ~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~~  100 (481)
T PRK14534         21 DVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRF  100 (481)
T ss_pred             ceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHHH
Confidence            456666799999999999999999999999999999999999         5666 334788999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCC
Q psy7914         257 NIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDN  316 (365)
Q Consensus       257 ~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~  316 (365)
                      +.+.+.+++++|||.++  .++.+ .+.|...+.+++++|.++|++|+..+.||||+.+-
T Consensus       101 ~~~~f~~d~~~Lni~~~--~~~p~-atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~  157 (481)
T PRK14534        101 FTEAFFDDCKKLNIVYP--DKVLV-ASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCF  157 (481)
T ss_pred             HHHHHHHHHHHcCCCCC--ceecC-ccchHHHHHHHHHHHHHCCCEEEECCeEEEecccc
Confidence            99999999999999988  44544 57899999999999999999999999999999973

>PTZ00399 cysteinyl-tRNA-synthetase; Provisional

Probab=99.80  E-value=4.1e-19  Score=187.82  Aligned_cols=126  Identities=16%  Similarity=0.184  Sum_probs=114.7

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHH-HCCCcEEeccCCCCCCchHHHHHHHcCCC-HHHHHHHHHHHHHHHH
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYA-MNGKNVFQPMGWDAFGLPAENAAHQHGID-PREWTVGNIATMKSQL  265 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr-~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~-~~e~~~~~~~~i~~~l  265 (365)
                      +-+...-|++.+.+||||||++|..|+++|||+ +.||+|.+++|+||+|.+|...|++.|++ +.++++.+.+.|.+++
T Consensus        61 v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~~d~  140 (651)
T PTZ00399         61 VRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFEDM  140 (651)
T ss_pred             eEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence            444444677779999999999999999999999 99999999999999999999999999999 9999999999999999


Q ss_pred             HhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCC
Q psy7914         266 QGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDN  316 (365)
Q Consensus       266 ~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~  316 (365)
                      ++|||..+  .++.+. ..|...+.+++++|+++|++|+.++.+|||.+.-
T Consensus       141 ~~Lni~~p--~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f  188 (651)
T PTZ00399        141 KALNVRPP--DVITRV-SEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAF  188 (651)
T ss_pred             HHcCCCCC--ccccCc-CccHHHHHHHHHHHHHCCCEEEECCeEEEEchhc
Confidence            99999887  444444 6899999999999999999999999999998864

>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase

Probab=99.79  E-value=4.9e-19  Score=163.87  Aligned_cols=90  Identities=17%  Similarity=0.131  Sum_probs=82.0

Q ss_pred             EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914         189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF  268 (365)
Q Consensus       189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l  268 (365)
                      -+....|+|+|++||||+|+++++|+++||+|++|++|+++.|+||||++|+..|++.|++|+++++.+.+.+++++++|
T Consensus        22 ~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~l  101 (213)
T cd00672          22 TMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKAL  101 (213)
T ss_pred             eEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence            33344556668999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCc-cCCCcccc
Q psy7914         269 GCKF-NWESELAT  280 (365)
Q Consensus       269 gI~~-D~~~~~~t  280 (365)
                      ||++ |  .+.+|
T Consensus       102 ~i~~~d--~~~rt  112 (213)
T cd00672         102 NVLPPD--VVPRV  112 (213)
T ss_pred             CCCCCC--cceee
Confidence            9998 6  55666

Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>KOG0435|consensus

Probab=99.78  E-value=1.1e-19  Score=185.88  Aligned_cols=80  Identities=25%  Similarity=0.510  Sum_probs=73.0

Q ss_pred             hhhhHHHHHhccCCCCCCCChhHHHHHhcccccccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEE
Q psy7914          17 GRAGAMDLYEGLSDPILQDWKDIVNLQKHWIGEPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYI   96 (365)
Q Consensus        17 ~~~ya~~Ll~~l~~~~l~~w~~v~~mQ~nWIG~~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~   96 (365)
                      .++||++||+||++  |++||+||.|||||||+|+|+++.|++.+.+.       -++.|+|||++|++|+++.    |+
T Consensus       220 ttaYAk~L~d~L~~--L~~W~~vk~mQrnWIG~~~G~el~F~ll~~~~-------~de~ltv~Tt~Petl~~~~----f~  286 (876)
T KOG0435|consen  220 TTAYAKRLLDGLET--LPEWPEVKDMQRNWIGRCDGAELMFPLLDDGS-------NDEILTVYTTRPETLFGAS----FL  286 (876)
T ss_pred             hhHHHHHHHHHHHh--hhhhhhHHHHHHhhcccccceEEEEEeccCCC-------CCceEEEEecCchhhccce----EE
Confidence            47999999999998  99999999999999999999999999976421       1467999999999999999    99


Q ss_pred             EecCccccccccc
Q psy7914          97 TVKSSHILASKTK  109 (365)
Q Consensus        97 ~l~~~h~l~~~~~  109 (365)
                      +|+++|+|+....
T Consensus       287 vl~~~H~L~~~~~  299 (876)
T KOG0435|consen  287 VLAPSHSLLDKDS  299 (876)
T ss_pred             EEcCCchhhhhhc
Confidence            9999999999877

>PRK04156 gltX glutamyl-tRNA synthetase; Provisional

Probab=99.76  E-value=2.3e-18  Score=178.33  Aligned_cols=159  Identities=19%  Similarity=0.237  Sum_probs=127.0

Q ss_pred             hhhcCCcccccCCCCcccchhhHHHHHHhhhHHHHHhhcCC--CCCc----cccCCCCCcCCCCCC-CceEEEecCCCCC
Q psy7914         126 SIVSSDPMLRDRKKPVCGESLNQVLKLVCDGVYRRRRSISS--PSDF----GVSSVGGTLEGKRRE-DNFYVLSMFPYPS  198 (365)
Q Consensus       126 ~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~--~~~~----g~~~~~~~~~~~~~~-~~~~I~~~~Pnpn  198 (365)
                      -|||++||||++++++.+.+++.+.+++.++..++...++.  ++.+    .+....+++++.++. +..+++.++|+||
T Consensus        32 ~~~~~~pelr~~~~ei~~~v~~~v~~vn~ms~ee~~~~l~~~~pe~~~~~~~~~~~~~~lp~L~~ae~g~V~tRFaPsPt  111 (567)
T PRK04156         32 KIMGENPELRSKAKEIIPIVKEVVEEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGKVVMRFAPNPS  111 (567)
T ss_pred             hhhccChhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhChhhhhhhhhhcccccCCCCCCCCCCCeEEEEeCCCCC
Confidence            48999999999999999999999999999999998877653  4432    122233456666665 5569999999999


Q ss_pred             CCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCccCCCcc
Q psy7914         199 GSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESEL  278 (365)
Q Consensus       199 G~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D~~~~~  278 (365)
                      |+|||||+|++++.+.+||  ...|.-++++-.||.--              .....++.+.|.++|++||+.+|  ..+
T Consensus       112 G~LHIGharaalln~~~Ar--~~~G~~iLRidDTDpk~--------------~R~~~e~~~~I~edL~wLGl~wD--~~~  173 (567)
T PRK04156        112 GPLHLGHARAAILNDEYAK--MYGGKFILRFEDTDPRT--------------KRPDPEAYDMILEDLKWLGVKWD--EVV  173 (567)
T ss_pred             CCccHHHHHHHHHHHHHHH--HcCCEEEEeEccCCCCc--------------ccchHHHHHHHHHHHHHcCCCCC--Ccc
Confidence            9999999999999999999  78999999998887511              11234667999999999999665  544


Q ss_pred             cccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914         279 ATCDPKYYKWTQALFLDLYHAGLVYR  304 (365)
Q Consensus       279 ~t~d~~~~~~v~~~f~~L~~kG~Iy~  304 (365)
                      +.+  .+.+...++.++|.++|++|.
T Consensus       174 ~qS--dr~~~y~~~a~~Li~~G~AY~  197 (567)
T PRK04156        174 IQS--DRLEIYYEYARKLIEMGGAYV  197 (567)
T ss_pred             Ccc--cCHHHHHHHHHHHHHcCCCcc
Confidence            444  466777899999999999984

>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase

Probab=99.73  E-value=9.6e-18  Score=165.55  Aligned_cols=146  Identities=17%  Similarity=0.198  Sum_probs=113.8

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCC------------------CchHHHHHHHcCC
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAF------------------GLPAENAAHQHGI  248 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~------------------G~~I~~~A~~~g~  248 (365)
                      +++|+++. +|||++||||++.++.+|+++|++|++|++|.+++|+|||                  |.|+...+...|.
T Consensus        20 ~~~v~tgi-~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~   98 (353)
T cd00674          20 KYVVASGI-SPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGC   98 (353)
T ss_pred             eEEEecCC-CCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCC
Confidence            46666666 5999999999999999999999999999999999999999                  7888888888888


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE------e----Cc---ceeecCCC
Q psy7914         249 DPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR------K----EA---TVNWDPID  315 (365)
Q Consensus       249 ~~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~------~----~~---~v~yc~~~  315 (365)
                      .+ ++++.+...+++.|+.|||++|  .+..|.........+.++..|.+++.|.+      +    ..   ...+|++|
T Consensus        99 ~~-~~~d~~~~~f~~~l~~lgi~~d--~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~c  175 (353)
T cd00674          99 CE-SYAEHFERPFEESLEKLGIEVE--FISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETWYPFMPYCEKC  175 (353)
T ss_pred             CH-HHHHHHHHHHHHHHHHcCCeee--eeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCceeeeeecCCc
Confidence            77 9999999999999999999998  33444444445677888888988888753      1    11   12569999


Q ss_pred             Ccccccccc-ccC-------CCccCCCCccEE
Q psy7914         316 NTVLADEQV-DEQ-------GISWRSGARVEK  339 (365)
Q Consensus       316 ~t~Ls~~ev-e~~-------~~c~~~g~~~e~  339 (365)
                      + -+. ..| +++       ..| .||+..+.
T Consensus       176 g-~~~-~~v~~~d~~~~~v~y~c-~cG~~g~~  204 (353)
T cd00674         176 G-KDT-TTVEAYDAKAGTVTYKC-ECGHEETV  204 (353)
T ss_pred             C-cce-eEEEEEeCCCCeEEEEc-CCCCEEEE
Confidence            8 343 222 222       256 48887654

Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.

>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6

Probab=99.72  E-value=7.8e-17  Score=154.69  Aligned_cols=126  Identities=19%  Similarity=0.218  Sum_probs=107.6

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      ++-+...-|+|...+||||+|++|..|++.|+|+..|++|.++.++.|-+.+|..+|++.|+++.++++.+.+.+.++++
T Consensus         8 ~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~dm~   87 (300)
T PF01406_consen    8 KVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFEDMK   87 (300)
T ss_dssp             EEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence            45556668999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeC-cceeecCCC
Q psy7914         267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE-ATVNWDPID  315 (365)
Q Consensus       267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~-~~v~yc~~~  315 (365)
                      +|||...   ...+...+|...+.+++++|.++|++|+.. +.|||++..
T Consensus        88 ~Lnv~~p---~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~  134 (300)
T PF01406_consen   88 ALNVLPP---DHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSK  134 (300)
T ss_dssp             HTT-------SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCG
T ss_pred             HcCCCCC---ccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeecc
Confidence            9999874   344556679999999999999999999999 999999874

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.

>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family

Probab=99.65  E-value=6.8e-16  Score=159.82  Aligned_cols=158  Identities=20%  Similarity=0.160  Sum_probs=122.9

Q ss_pred             hhhhcCCcccccCCCCcccchhhHHHHHHhhhHHHHHhhcCC--CCCccccCCCCCcCCCCCC-CceEEEecCCCCCCCC
Q psy7914         125 KSIVSSDPMLRDRKKPVCGESLNQVLKLVCDGVYRRRRSISS--PSDFGVSSVGGTLEGKRRE-DNFYVLSMFPYPSGSL  201 (365)
Q Consensus       125 ~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~--~~~~g~~~~~~~~~~~~~~-~~~~I~~~~PnpnG~L  201 (365)
                      -.+|+++|++|.+.+++...+++.+.+++.++..++...++.  ++.-.+...++..++.++. ...+++.++|+|||+|
T Consensus        27 ~~~~~~~p~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~vvtRFaPsPtG~L  106 (560)
T TIGR00463        27 GSVMSNNPELRKKAKEVLEEVEPIVEEVNDLSSEELKELKKSLGVDKKKKEKKAKGLIELPGAKMGEVVMRFAPNPSGPL  106 (560)
T ss_pred             ehhhccCCccCcchhhHHHHHHHHHHHHhhcCHHHHHHHHhhhcchhhhccccccCCCCCCCCcCCeeEEEeCCCCCCCc
Confidence            358999999999999999999999999988887776655432  1111111222333445554 3569999999999999


Q ss_pred             chHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCccCCCccccc
Q psy7914         202 HMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATC  281 (365)
Q Consensus       202 HiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~  281 (365)
                      ||||++++++.+.+||  .+.|.-++++-.+|..                .-..++.+.|.++|++||+.+|  ..+  .
T Consensus       107 HiGharaalln~~~Ar--~~~G~~iLRidDTDp~----------------R~~~e~~~~I~edL~wLGi~~d--~~~--~  164 (560)
T TIGR00463       107 HIGHARAAILNQYFAK--KYKGKLIIRFDDTDPR----------------RVKPEAYDMILEDLDWLGVKGD--EVV--Y  164 (560)
T ss_pred             cHHHHHHHHHHHHHHH--hcCCEEEEEeCcCCcc----------------cccHHHHHHHHHHHHHcCCCCC--ccc--c
Confidence            9999999999999998  7899999999888861                2235689999999999999866  443  4


Q ss_pred             ChhhHHHHHHHHHHHHHCCCEEE
Q psy7914         282 DPKYYKWTQALFLDLYHAGLVYR  304 (365)
Q Consensus       282 d~~~~~~v~~~f~~L~~kG~Iy~  304 (365)
                      ...|.+...++..+|.++|++|.
T Consensus       165 qSd~~~~y~~~a~~Li~~G~AY~  187 (560)
T TIGR00463       165 QSDRIEEYYDYCRKLIEMGKAYV  187 (560)
T ss_pred             ccccHHHHHHHHHHHHHcCCcee
Confidence            44577888999999999999984

The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).

>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase

Probab=99.64  E-value=6.7e-16  Score=133.83  Aligned_cols=77  Identities=25%  Similarity=0.257  Sum_probs=74.5

Q ss_pred             EEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         190 VLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       190 I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      |++++|||||++||||+|+++++|+++|++|+.|++|.+++|+||+|.++...|.+.+.+++++++.+.+.++++++
T Consensus         1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   77 (143)
T cd00802           1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE   77 (143)
T ss_pred             CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999887

Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=2.8e-15  Score=150.86  Aligned_cols=125  Identities=19%  Similarity=0.209  Sum_probs=113.8

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG  267 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~  267 (365)
                      +-+...-|+|....||||+|++|..|++.|||+..||.|.++..+.|-..+|...|.+.|.++.++++.+.+.+.+++++
T Consensus        23 V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~a  102 (464)
T COG0215          23 VKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDA  102 (464)
T ss_pred             EEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence            45555689999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCC-ccCCCcccccChhhHHHHHHHHHHHHHCCCEEEe-CcceeecCCCC
Q psy7914         268 FGCK-FNWESELATCDPKYYKWTQALFLDLYHAGLVYRK-EATVNWDPIDN  316 (365)
Q Consensus       268 lgI~-~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~-~~~v~yc~~~~  316 (365)
                      |||. .|    ..+....|+..+.+++++|.++|++|.. ++.|||+++.-
T Consensus       103 L~v~~p~----~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f  149 (464)
T COG0215         103 LNVLPPD----IEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKF  149 (464)
T ss_pred             hCCCCCc----ccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccc
Confidence            9995 45    2244456899999999999999999998 68999998854

>KOG0437|consensus

Probab=99.62  E-value=4.2e-15  Score=153.73  Aligned_cols=166  Identities=24%  Similarity=0.445  Sum_probs=133.9

Q ss_pred             HhhhHHHHHhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCC
Q psy7914         153 VCDGVYRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGW  232 (365)
Q Consensus       153 ~~~~ly~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~  232 (365)
                      ++.....+|   +....|..++..   ...+++++++++++-||.||.||+||+.+..-.|..+-|.|++|++|++..|+
T Consensus        17 iEk~~q~~W---~~e~~fevda~~---el~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgF   90 (1080)
T KOG0437|consen   17 IEKKYQKKW---DTEKVFEVDAPN---ELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGF   90 (1080)
T ss_pred             HHHHHHHhh---hhhhheeccCch---hcccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeeccc
Confidence            444444555   233345443211   22345678999999999999999999999999999999999999999999999


Q ss_pred             CCCCchHHHHHHHc-------CCC--------------------------------------------------------
Q psy7914         233 DAFGLPAENAAHQH-------GID--------------------------------------------------------  249 (365)
Q Consensus       233 Dd~G~~I~~~A~~~-------g~~--------------------------------------------------------  249 (365)
                      .|.|.||...|.+.       |.+                                                        
T Consensus        91 HCTGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deE  170 (1080)
T KOG0437|consen   91 HCTGMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEE  170 (1080)
T ss_pred             ccCCCccHHhHHHHHHHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHH
Confidence            99999998887431       111                                                        


Q ss_pred             ------HHHHHHHHHHHHHHHHHhcCCCccCCCcccccC--hhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccc
Q psy7914         250 ------PREWTVGNIATMKSQLQGFGCKFNWESELATCD--PKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLAD  321 (365)
Q Consensus       250 ------~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d--~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~  321 (365)
                            |..|...+-..-.++|++||...||.+.+.|+|  |.|-.+|.+.|.+|.+.|.|-.+.+..-|||.++.+..|
T Consensus       171 I~~F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmD  250 (1080)
T KOG0437|consen  171 IKKFADPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMD  250 (1080)
T ss_pred             hhcccChhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcccc
Confidence                  123444445677899999999999988888887  788899999999999999999999999999999999998


Q ss_pred             ccc
Q psy7914         322 EQV  324 (365)
Q Consensus       322 ~ev  324 (365)
                      .+-
T Consensus       251 HDR  253 (1080)
T KOG0437|consen  251 HDR  253 (1080)
T ss_pred             ccc
Confidence            875

>KOG4426|consensus

Probab=99.52  E-value=8.9e-14  Score=137.10  Aligned_cols=189  Identities=14%  Similarity=0.119  Sum_probs=146.1

Q ss_pred             CCCchhhhccccceEEEecCccccccccccccCcceeEEEccchhhhhcCCcccccCCCCcccchhhHHHHHHhhhHHHH
Q psy7914          81 PEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLKLVCDGVYRR  160 (365)
Q Consensus        81 ~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~~~gf~n~~i~n~~~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~ly~~  160 (365)
                      .+|..++.+.    ...+..+..+.+.++|| |||+|+.++.++.+                        +.++.-+   
T Consensus       129 ~~P~~va~~l----~~~lP~se~vEk~~iag-pGFiNv~Ls~d~~~------------------------~~i~nll---  176 (656)
T KOG4426|consen  129 KRPRDVAQEL----QKHLPTSEMVEKCEIAG-PGFINVFLSKDYMS------------------------KQISNLL---  176 (656)
T ss_pred             cCcHHHHHHH----HhhCCchhhhhhhcccC-CceEEEEechHHHH------------------------HHHHHHH---
Confidence            3589999988    78888889999999999 99999999999987                        4444333   


Q ss_pred             HhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHH
Q psy7914         161 RRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAE  240 (365)
Q Consensus       161 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~  240 (365)
                          ..|-          +.|.-+.++++|-+.+||.-..||+||.|+.++||.++|.+.+.|++|++...+-|+|+|.-
T Consensus       177 ----~~GV----------~~P~l~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFG  242 (656)
T KOG4426|consen  177 ----VNGV----------KLPTLSVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFG  242 (656)
T ss_pred             ----HcCC----------CCcccceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHH
Confidence                1111          12223445788888899999999999999999999999999999999999999999998876


Q ss_pred             HHHHHc----------------------------------------------CCCH------HHHHHHHHHHHHHHHHhc
Q psy7914         241 NAAHQH----------------------------------------------GIDP------REWTVGNIATMKSQLQGF  268 (365)
Q Consensus       241 ~~A~~~----------------------------------------------g~~~------~e~~~~~~~~i~~~l~~l  268 (365)
                      ....-.                                              |-+|      ..+|+-....+...+++|
T Consensus       243 MLIahL~dkFPd~l~vsp~IgDLQvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rL  322 (656)
T KOG4426|consen  243 MLIAHLFDKFPDYLSVSPPIGDLQVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRL  322 (656)
T ss_pred             HHHHHHHHhCCchhccCCCchhHHHHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHh
Confidence            554210                                              1111      223677778899999999


Q ss_pred             CCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcc-eeecCCCCcccc
Q psy7914         269 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEAT-VNWDPIDNTVLA  320 (365)
Q Consensus       269 gI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~-v~yc~~~~t~Ls  320 (365)
                      .|+.-     .--++-|...+.++++.|..+|++.+.++. +-|-+.|+-+|.
T Consensus       323 di~l~-----e~GESFYq~~m~~vveel~~kglvee~~Gr~i~f~~g~~IPLt  370 (656)
T KOG4426|consen  323 DISLK-----ERGESFYQDRMAEVVEELKSKGLVEEDDGRRIMFPEGCDIPLT  370 (656)
T ss_pred             cchHh-----hcchhhhhhHHHHHHHHHhcCCceeecCCceEeccCCCCcceE
Confidence            99774     123445777889999999999999998764 467777776654

>PRK00750 lysK lysyl-tRNA synthetase; Reviewed

Probab=99.51  E-value=9.5e-15  Score=151.20  Aligned_cols=147  Identities=18%  Similarity=0.160  Sum_probs=100.4

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCC--------chH-HHHHHHcCCC---------
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFG--------LPA-ENAAHQHGID---------  249 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G--------~~I-~~~A~~~g~~---------  249 (365)
                      ++|.++. +|||.+||||++..+.+|+++|++|..|++|.+++++||||        +|. +..++..|.+         
T Consensus        25 ~~~~~g~-~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G  103 (510)
T PRK00750         25 VVVETGI-GPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFG  103 (510)
T ss_pred             EEEEeCC-CCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCC
Confidence            4555555 69999999999999999999999999999999999999997        444 2344444544         


Q ss_pred             -HHHHHHHHHHHHHHHHHhcCCCccCCCcccccCh-hhHHHHHHHHHHHHHCCCEEE----------eCc---ceeecCC
Q psy7914         250 -PREWTVGNIATMKSQLQGFGCKFNWESELATCDP-KYYKWTQALFLDLYHAGLVYR----------KEA---TVNWDPI  314 (365)
Q Consensus       250 -~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~-~~~~~v~~~f~~L~~kG~Iy~----------~~~---~v~yc~~  314 (365)
                       +..|++.+...+++.|+.|||.+|   ++++++. ......+.+...|.+++.|.+          ...   -..+|+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~gi~~d---~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~~~~~~P~~pic~~  180 (510)
T PRK00750        104 CHESYAEHFNAPLREFLDRFGIEYE---FISATECYKSGRYDEAILTALENRDEIMEILLPYLGEERQATYSPFLPICPK  180 (510)
T ss_pred             CchHHHHHHHHHHHHHHHHcCCceE---EEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCccCCCeeeeeeeCCC
Confidence             799999999999999999999998   2233331 111233444444555554432          111   1256999


Q ss_pred             CCccccccccc-------cCCCccCCCCccEE
Q psy7914         315 DNTVLADEQVD-------EQGISWRSGARVEK  339 (365)
Q Consensus       315 ~~t~Ls~~eve-------~~~~c~~~g~~~e~  339 (365)
                      |++.+.-.-++       +...|. ||+..+.
T Consensus       181 cg~~~~~~~~~~d~~~~~v~y~~~-cG~~~~~  211 (510)
T PRK00750        181 CGKVLTTPVISYDAEAGTVTYDCE-CGHEGEV  211 (510)
T ss_pred             CCccceEEEEEEeCCCCEEEEEcC-CCCEEEE
Confidence            99876522111       122453 8886654

>PLN02563 aminoacyl-tRNA ligase

Probab=99.50  E-value=2e-14  Score=157.87  Aligned_cols=80  Identities=28%  Similarity=0.489  Sum_probs=67.4

Q ss_pred             hhhhHHHHHhccCCCCCCCChh-HHHHHhcccccccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceE
Q psy7914          17 GRAGAMDLYEGLSDPILQDWKD-IVNLQKHWIGEPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQY   95 (365)
Q Consensus        17 ~~~ya~~Ll~~l~~~~l~~w~~-v~~mQ~nWIG~~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f   95 (365)
                      .++||++|+++|++  |+ ||+ |++||+||||||+|+.|.|++.+...     .+.+..|.||||+|+||++++    |
T Consensus       273 it~ya~~L~~~l~~--~~-wp~~v~~~q~nwiG~s~g~~i~F~~~~~~~-----~~~~~~l~V~TTrPeTl~g~t----~  340 (963)
T PLN02563        273 ITAYADRLLEDLDD--LD-WPESIKEMQRNWIGRSEGAELDFSVLDGEG-----KERDEKITVYTTRPDTLFGAT----Y  340 (963)
T ss_pred             cchhHHHHHHhhhh--cC-CCHHHHHHHHHhccccceEEEEEEecCccc-----cCCCCEEEEEeCCChHHhhcc----E
Confidence            47899999999997  75 999 99999999999999999999853100     001346999999999999999    9


Q ss_pred             EEecCcccccccc
Q psy7914          96 ITVKSSHILASKT  108 (365)
Q Consensus        96 ~~l~~~h~l~~~~  108 (365)
                      ++++|+|+++...
T Consensus       341 iav~p~~~yv~~~  353 (963)
T PLN02563        341 LVVAPEHPLLSSL  353 (963)
T ss_pred             EEECCCChhhHhh
Confidence            9999999987543

>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=1.5e-14  Score=154.84  Aligned_cols=84  Identities=18%  Similarity=0.312  Sum_probs=72.8

Q ss_pred             ccchhhhHHHHHhccCCCCCC-CChh-HHHHHhcccccccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccc
Q psy7914          14 KSSGRAGAMDLYEGLSDPILQ-DWKD-IVNLQKHWIGEPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKS   91 (365)
Q Consensus        14 ~~~~~~ya~~Ll~~l~~~~l~-~w~~-v~~mQ~nWIG~~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~   91 (365)
                      +-..++||++||+||+.  |+ .||| |+.||+||||+|.|++|.|.+.+..       . ...++|||++|+|+++++ 
T Consensus       193 ~~kit~yae~ll~~l~~--l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~-------~-~~~~~vfttr~dt~~gvt-  261 (814)
T COG0495         193 FFKITDYADELLDDLDK--LATLWPETVKGMQRNWIGPSEGYEVAFVVDGEE-------E-IVSIEVFTTRPDTLFGVT-  261 (814)
T ss_pred             EEEechhHHHHHhhhhh--hccCCchhHHHHHHcCcCCCCCeEEEEecCCcc-------c-ceeeeeeeccCccccCeE-
Confidence            44579999999999997  77 4999 9999999999999999999984320       0 235999999999999999 


Q ss_pred             cceEEEecCccccccccccc
Q psy7914          92 QGQYITVKSSHILASKTKEK  111 (365)
Q Consensus        92 ~g~f~~l~~~h~l~~~~~a~  111 (365)
                         |++++++|+|+..-+..
T Consensus       262 ---~~~~a~~h~lv~~~~~~  278 (814)
T COG0495         262 ---YVVLAPEHPLVGKLVTN  278 (814)
T ss_pred             ---EEEEeCCchHHHHHhcC
Confidence               99999999998876665

>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family

Probab=99.43  E-value=1.3e-13  Score=150.50  Aligned_cols=75  Identities=24%  Similarity=0.521  Sum_probs=68.1

Q ss_pred             hhhhHHHHHhccCCCCCCCChh-HHHHHhcccccccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceE
Q psy7914          17 GRAGAMDLYEGLSDPILQDWKD-IVNLQKHWIGEPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQY   95 (365)
Q Consensus        17 ~~~ya~~Ll~~l~~~~l~~w~~-v~~mQ~nWIG~~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f   95 (365)
                      .++||++|+++|+.  +.+||+ |++||+||||+|.|+.|.|++.+.          +..|.||||+|+||++.+    +
T Consensus       192 i~~~~~~l~~~l~~--~~~wp~~v~~~q~~wig~s~g~~i~f~~~~~----------~~~l~v~TTrP~Tl~g~~----~  255 (842)
T TIGR00396       192 ITAYAEELLNDLEE--LDHWPESVKEMQRNWIGKSEGVEITFKIADH----------KEKIAVFTTRPDTIFGVT----Y  255 (842)
T ss_pred             hhhhHHHHHHHHhh--hccccHHHHHHHHhcccccceEEEEEEcCCC----------CCEEEEEeCCcHHhhhcc----E
Confidence            46799999999998  889999 999999999999999999998542          345999999999999999    9


Q ss_pred             EEecCccccccc
Q psy7914          96 ITVKSSHILASK  107 (365)
Q Consensus        96 ~~l~~~h~l~~~  107 (365)
                      ++++|+|+++..
T Consensus       256 iav~p~~~~~~~  267 (842)
T TIGR00396       256 LALAPEHPLVEK  267 (842)
T ss_pred             EEECCCCHHHHh
Confidence            999999998765

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.

>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A

Probab=99.38  E-value=2e-13  Score=123.57  Aligned_cols=51  Identities=20%  Similarity=0.475  Sum_probs=42.5

Q ss_pred             hcccccccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCcccccccc
Q psy7914          44 KHWIGEPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKT  108 (365)
Q Consensus        44 ~nWIG~~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~  108 (365)
                      |||||||+|++|.|++...          .++|+|||+||+||+|++    |++|+++|||++.-
T Consensus         1 rNWIGkS~G~~i~F~i~~~----------~~~i~vFTTrpdTifGvt----fials~~H~lv~~l   51 (185)
T PF13603_consen    1 RNWIGKSEGAEIDFKIKGS----------NEKIEVFTTRPDTIFGVT----FIALSPEHPLVKKL   51 (185)
T ss_dssp             HHHH-EEEEEEEEEEBTTS----------SCEEEEEES-GGGGGG------EEEEETTSCHHHHC
T ss_pred             CCCcCCcccEEEEEEecCC----------CCEEEEEECCcchhhCce----EEEECCCCHHHHhh
Confidence            7999999999999999763          457999999999999999    99999999988755

...

>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete

Probab=99.36  E-value=4.1e-13  Score=138.77  Aligned_cols=85  Identities=21%  Similarity=0.309  Sum_probs=78.6

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCC------------------CchHHHHHHHcCC
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAF------------------GLPAENAAHQHGI  248 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~------------------G~~I~~~A~~~g~  248 (365)
                      +++|+++.+ |||++||||++..+.+|+++|++|++|++|.+++++||+                  |.|+...+.-.|.
T Consensus        19 ~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~   97 (515)
T TIGR00467        19 LYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGC   97 (515)
T ss_pred             eEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCC
Confidence            467777766 999999999999999999999999999999999999999                  8888888888887


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914         249 DPREWTVGNIATMKSQLQGFGCKFN  273 (365)
Q Consensus       249 ~~~e~~~~~~~~i~~~l~~lgI~~D  273 (365)
                      . ..|++.+...+.+.|+.|||.++
T Consensus        98 ~-~s~~~h~~~~~~~~l~~~gi~~e  121 (515)
T TIGR00467        98 K-TSYAEHFLIPFLESLPVLGINPE  121 (515)
T ss_pred             c-HHHHHHHHHHHHHHHHHcCCeEE
Confidence            6 89999999999999999999886

This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.

>KOG2007|consensus

Probab=99.35  E-value=7.1e-12  Score=125.78  Aligned_cols=127  Identities=18%  Similarity=0.142  Sum_probs=107.9

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHH-HCCCcEEeccCCCCCCchHHHHHHH--cCCCHHHHHH---HHHHHH
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYA-MNGKNVFQPMGWDAFGLPAENAAHQ--HGIDPREWTV---GNIATM  261 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr-~~G~~V~~~~g~Dd~G~~I~~~A~~--~g~~~~e~~~---~~~~~i  261 (365)
                      +-.....|++...-||||||+||-.|++.|+|+ +-||+|.++.++.|-+.+|...|.+  .+..|..+.+   .+.+.|
T Consensus        56 v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~~e~eF  135 (586)
T KOG2007|consen   56 VTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCYYEEEF  135 (586)
T ss_pred             EEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHHHHHHH
Confidence            444455899999999999999999999999999 8999999999999999999999972  3444444433   566999


Q ss_pred             HHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCc
Q psy7914         262 KSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNT  317 (365)
Q Consensus       262 ~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t  317 (365)
                      .+|+.+|++...   -..|.-.+|...+..+++++.++|+.|.-++.||||...-.
T Consensus       136 ~~DM~~LnvLpP---tv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~  188 (586)
T KOG2007|consen  136 LQDMAALNVLPP---TVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFP  188 (586)
T ss_pred             HHHHHHhCCCCC---cccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEeccccc
Confidence            999999999764   45566678999999999999999999999999999987543

>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase

Probab=99.27  E-value=1.8e-11  Score=114.91  Aligned_cols=96  Identities=20%  Similarity=0.272  Sum_probs=76.5

Q ss_pred             EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914         189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF  268 (365)
Q Consensus       189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l  268 (365)
                      +++.++|.|||+|||||+|++++.+.+||  ...|.-++++..+|+-=.              .......+.|.++|++|
T Consensus         2 v~~RfaPsPtG~lHiG~~rtal~~~l~Ar--~~~G~~ilRieDtD~~r~--------------~~~~~~~~~i~~dL~wL   65 (240)
T cd09287           2 VVMRFAPNPNGPLHLGHARAAILNGEYAK--MYGGKFILRFDDTDPRTK--------------RPDPEAYDMIPEDLEWL   65 (240)
T ss_pred             ceEeCCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEeeCcCCCCcc--------------cchHHHHHHHHHHHHHc
Confidence            57899999999999999999999999999  678888888877775110              12345666799999999


Q ss_pred             CCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914         269 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  304 (365)
Q Consensus       269 gI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~  304 (365)
                      |+.+|  ..+.  ...+.+...+++++|.++|++|.
T Consensus        66 Gl~~d--~~~~--qS~r~~~y~~~~~~Li~~G~aY~   97 (240)
T cd09287          66 GVKWD--EVVI--ASDRIELYYEYARKLIEMGGAYV   97 (240)
T ss_pred             CCCCC--Cccc--hhccHHHHHHHHHHHHHcCCccc
Confidence            99555  4433  34466777899999999999996

Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.

>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase

Probab=99.27  E-value=9.4e-12  Score=119.10  Aligned_cols=99  Identities=24%  Similarity=0.240  Sum_probs=80.6

Q ss_pred             EEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcC
Q psy7914         190 VLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG  269 (365)
Q Consensus       190 I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lg  269 (365)
                      ++.++|.|||+|||||+|++++...+||  +..|.-++++-.+|.                .....++.+.|.++|++||
T Consensus         2 ~~RFAPSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD~----------------~R~~~~~~~~I~~dL~wLG   63 (272)
T TIGR03838         2 RGRFAPSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVRIEDLDP----------------PREVPGAADDILRTLEAYG   63 (272)
T ss_pred             eeeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC----------------CCCChHHHHHHHHHHHHcC
Confidence            5788999999999999999999999999  889999999988885                2223578899999999999


Q ss_pred             CCccCCCc-ccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCC
Q psy7914         270 CKFNWESE-LATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPID  315 (365)
Q Consensus       270 I~~D~~~~-~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~  315 (365)
                      |.+|  .. +..+  .+.+.-.+++++|.++|++|     .+||+..
T Consensus        64 l~wD--e~~~~QS--~r~~~Y~~~~~~L~~~G~aY-----~C~Ct~e  101 (272)
T TIGR03838        64 LHWD--GEVVYQS--QRHALYQAALDRLLAAGLAY-----PCQCTRK  101 (272)
T ss_pred             CCCC--CCeeeee--CCHHHHHHHHHHHHHcCCEE-----ecCCCHH
Confidence            9776  43 2333  45566789999999999998     3456553

This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.

>PLN03233 putative glutamate-tRNA ligase; Provisional

Probab=99.25  E-value=1.7e-11  Score=126.09  Aligned_cols=96  Identities=23%  Similarity=0.287  Sum_probs=81.5

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      +.+++.++|.|||+|||||||++++...+||  ...|.-++++-.+|.                ..-..++.+.|.++|+
T Consensus        10 g~v~tRFAPsPtG~LHiGharaAlln~l~Ar--~~gG~~iLRiEDTDp----------------~R~~~e~~~~I~~dL~   71 (523)
T PLN03233         10 GQIVTRFPPEPSGYLHIGHAKAALLNDYYAR--RYKGRLILRFDDTNP----------------SKEKAEFEESIIEDLG   71 (523)
T ss_pred             CeEEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEECCCCC----------------CccchHHHHHHHHHHH
Confidence            3589999999999999999999999999999  789999999988874                2334688999999999


Q ss_pred             hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914         267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  304 (365)
Q Consensus       267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~  304 (365)
                      |||+.+|  ..+.++  .+.+...+...+|.++|.+|.
T Consensus        72 WLGl~wD--~~~~qS--dr~~~y~~~a~~Li~~G~AY~  105 (523)
T PLN03233         72 KIEIKPD--SVSFTS--DYFEPIRCYAIILIEEGLAYM  105 (523)
T ss_pred             HhCCCCC--CCcccc--ccHHHHHHHHHHHHHcCCeEe
Confidence            9999766  544443  466777899999999999984

>PRK00390 leuS leucyl-tRNA synthetase; Validated

Probab=99.24  E-value=6.6e-12  Score=136.65  Aligned_cols=76  Identities=22%  Similarity=0.479  Sum_probs=68.7

Q ss_pred             hhhhHHHHHhccCCCCCCCChh-HHHHHhcccccccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceE
Q psy7914          17 GRAGAMDLYEGLSDPILQDWKD-IVNLQKHWIGEPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQY   95 (365)
Q Consensus        17 ~~~ya~~Ll~~l~~~~l~~w~~-v~~mQ~nWIG~~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f   95 (365)
                      .++||++|+++|++  +.+||+ |+.||+||||+|.|+.|.|++.+.          +..|.||||+|+||++..    +
T Consensus       194 i~~~~~~L~~~l~~--~~~w~~~v~~~~~~wig~~~~~~i~f~~~~~----------~~~l~v~TTrPeTl~g~~----a  257 (805)
T PRK00390        194 ITDYADELLDDLDK--LEDWPEKVKTMQRNWIGRSEGAEVTFKVEDS----------DEKIEVFTTRPDTLFGAT----Y  257 (805)
T ss_pred             cchhHHHHHHHHHh--hccCcHHHHHHHHhhccccceEEEEEEccCC----------CCEEEEEeCCchHhhcce----E
Confidence            46899999999998  889999 999999999999999999998642          345999999999999999    9


Q ss_pred             EEecCcccccccc
Q psy7914          96 ITVKSSHILASKT  108 (365)
Q Consensus        96 ~~l~~~h~l~~~~  108 (365)
                      ++++|+|+.+...
T Consensus       258 iav~p~~~~~~~~  270 (805)
T PRK00390        258 LVLAPEHPLVEKL  270 (805)
T ss_pred             EEECCCChhHHhh
Confidence            9999999987664

>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=2.8e-11  Score=123.63  Aligned_cols=99  Identities=20%  Similarity=0.257  Sum_probs=82.9

Q ss_pred             EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914         189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF  268 (365)
Q Consensus       189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l  268 (365)
                      +++.++|.|||+|||||||++++...+||  ...|.-++++-.||-                ..-..++.+.|.++|+||
T Consensus        10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar--~~~G~fiLRiEDTD~----------------~R~~~e~~~~I~~~L~WL   71 (472)
T COG0008          10 VRTRFAPSPTGYLHIGHARTALLNYLYAR--KYGGKFILRIEDTDP----------------ERETPEAEDAILEDLEWL   71 (472)
T ss_pred             eEEEECcCCCCccchHHHHHHHHHHHHHH--HhCCEEEEEecCCCC----------------CCCCHHHHHHHHHHHHhc
Confidence            89999999999999999999999999999  889999999988884                223357899999999999


Q ss_pred             CCCccCCCc-ccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCC
Q psy7914         269 GCKFNWESE-LATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPI  314 (365)
Q Consensus       269 gI~~D~~~~-~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~  314 (365)
                      |+.+|  .. ++.+  .+.+...++..+|+++|.+|     .+||..
T Consensus        72 Gl~wd--e~~~~QS--~r~~~Y~~~~~~Li~~G~AY-----~c~ct~  109 (472)
T COG0008          72 GLDWD--EGPYYQS--ERFDIYYEYAEKLIEKGKAY-----VCYCTP  109 (472)
T ss_pred             CCCCC--Cceeehh--hhHHHHHHHHHHHHHCCCeE-----EecCCH
Confidence            99666  52 3333  45666788999999999988     456666

>PTZ00402 glutamyl-tRNA synthetase; Provisional

Probab=99.22  E-value=5.3e-11  Score=123.93  Aligned_cols=96  Identities=24%  Similarity=0.297  Sum_probs=80.6

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      ..+++.++|.|||+|||||++++++...+||  ...|.-++++-.+|.                ..-..++.+.|.++|+
T Consensus        51 ~~v~tRFAPsPtGyLHIGharaAllN~l~Ar--~~gG~~iLRiEDTDp----------------~R~~~e~~d~IleDL~  112 (601)
T PTZ00402         51 GKVVTRFPPEASGFLHIGHAKAALINSMLAD--KYKGKLVFRFDDTNP----------------SKEKEHFEQAILDDLA  112 (601)
T ss_pred             CeeEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEEcCCCC----------------cccCHHHHHHHHHHHH
Confidence            4589999999999999999999999999999  789999999988874                2334688999999999


Q ss_pred             hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEE
Q psy7914         267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVY  303 (365)
Q Consensus       267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy  303 (365)
                      |||+.+|  .. .+....+.+...++..+|.++|++|
T Consensus       113 WLGl~wD--e~-~~~QSdr~d~y~e~a~~Li~~G~AY  146 (601)
T PTZ00402        113 TLGVSWD--VG-PTYSSDYMDLMYEKAEELIKKGLAY  146 (601)
T ss_pred             HCCCCCC--Cc-eeeccccHHHHHHHHHHHHHcCCEE
Confidence            9999665  42 1233446677789999999999998

>PRK12558 glutamyl-tRNA synthetase; Provisional

Probab=99.22  E-value=4.1e-11  Score=121.74  Aligned_cols=100  Identities=18%  Similarity=0.275  Sum_probs=82.7

Q ss_pred             EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914         189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF  268 (365)
Q Consensus       189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l  268 (365)
                      +++.++|.|||+|||||+|++++.-.+||  ...|.-++++-.+|-                ..-.+.+.+.|+++|++|
T Consensus         3 vr~RFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD~----------------~Rs~~~~~~~I~e~L~wL   64 (445)
T PRK12558          3 VITRFAPSPTGYLHVGNARTALLNWLYAR--KHGGKFILRIDDTDL----------------ERSKQEYADAIAEDLKWL   64 (445)
T ss_pred             eeEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeccCCc----------------ccchHHHHHHHHHHHHHc
Confidence            67899999999999999999999999999  889999999988883                223478899999999999


Q ss_pred             CCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCC
Q psy7914         269 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPID  315 (365)
Q Consensus       269 gI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~  315 (365)
                      ||.+|  .+++.+  ...+.+.+++++|.++|++|+     |||...
T Consensus        65 GI~~D--e~y~QS--er~~~y~~~~e~L~e~G~AY~-----C~Ct~e  102 (445)
T PRK12558         65 GINWD--RTFRQS--DRFDRYDEAAEKLKAAGRLYP-----CYETPE  102 (445)
T ss_pred             CCCCC--ccccHH--HHHHHHHHHHHHHHHCCCEEE-----ecCchH
Confidence            99888  333333  334678999999999999884     455554

>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6

Probab=99.22  E-value=3.7e-11  Score=117.50  Aligned_cols=100  Identities=19%  Similarity=0.257  Sum_probs=75.0

Q ss_pred             EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914         189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF  268 (365)
Q Consensus       189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l  268 (365)
                      +++.++|.|||+|||||+|++++...+||  +..|.-++++-.+|.                .....++.+.|.++|++|
T Consensus         2 v~tRFAPsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRieDtD~----------------~R~~~~~~~~i~~~L~wl   63 (314)
T PF00749_consen    2 VRTRFAPSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIEDTDP----------------ERCRPEFYDAILEDLRWL   63 (314)
T ss_dssp             -EEEE---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEETSST----------------TTCHHHHHHHHHHHHHHH
T ss_pred             eeEeeCCCCCCCcccchhHHHHHHHHHHh--ccCceEEEecccccc----------------ccchhhHHHHHHhheeEE
Confidence            67899999999999999999999999999  889999999988885                223467889999999999


Q ss_pred             CCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCC
Q psy7914         269 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPI  314 (365)
Q Consensus       269 gI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~  314 (365)
                      |+.+|. ..+..  +.+.+...+++++|.++|.+|.     |||.+
T Consensus        64 Gl~~D~-~~~~Q--S~r~~~Y~~~~~~L~~~g~aY~-----C~Csr  101 (314)
T PF00749_consen   64 GLEWDY-GPYYQ--SDRLEIYQEAAEKLIDKGKAYP-----CFCSR  101 (314)
T ss_dssp             T---ST-CEEEG--GGGHHHHHHHHHHHHHTTSEEE-----EESEH
T ss_pred             EEecCC-eEEeH--HHHHHHHHHHHHHHhhcCCCcc-----ccCCH
Confidence            997762 33333  3456677899999999999984     45554

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....

>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase

Probab=99.21  E-value=6.2e-11  Score=111.07  Aligned_cols=94  Identities=18%  Similarity=0.247  Sum_probs=79.6

Q ss_pred             EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914         189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF  268 (365)
Q Consensus       189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l  268 (365)
                      +++.++|.|||+||+||++++++...+||  ...|.-++++-.+|.                .....++.+.|.++|++|
T Consensus         2 v~~RFAPsPtG~lHlG~~~~al~~~l~Ar--~~~G~~iLRieDtD~----------------~R~~~~~~~~I~~dL~wl   63 (238)
T cd00807           2 VVTRFPPEPNGYLHIGHAKAILLNFGYAK--KYGGRCNLRFDDTNP----------------EKEEEEYVDSIKEDVKWL   63 (238)
T ss_pred             ceEecCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEecCCCC----------------cccchHHHHHHHHHHHHc
Confidence            57899999999999999999999999999  789999999988874                333468899999999999


Q ss_pred             CCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914         269 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  304 (365)
Q Consensus       269 gI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~  304 (365)
                      |+.+|  ..+..+  .+.+...+++.+|.++|++|.
T Consensus        64 Gl~wD--~~~~QS--~r~~~Y~~~~~~L~~~g~aY~   95 (238)
T cd00807          64 GIKPY--KVTYAS--DYFDQLYEYAEQLIKKGKAYV   95 (238)
T ss_pred             CCCCC--Cceecc--cCHHHHHHHHHHHHHcCCeec
Confidence            99776  444333  345666899999999999998

Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.

>PTZ00437 glutaminyl-tRNA synthetase; Provisional

Probab=99.19  E-value=5.8e-11  Score=122.75  Aligned_cols=100  Identities=19%  Similarity=0.226  Sum_probs=82.1

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG  267 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~  267 (365)
                      .+++.++|.|||+|||||+|++++...+||  +..|.-++++-.+|.                ..-..++.+.|.++|++
T Consensus        51 kv~tRFaPsPtG~LHiGharaalln~~~Ar--~~gG~~iLRiEDTDp----------------~r~~~e~~~~I~~dL~w  112 (574)
T PTZ00437         51 KPYFRFPPEPNGFLHIGHAKSMNLNFGSAR--AHGGKCYLRYDDTNP----------------ETEEQVYIDAIMEMVKW  112 (574)
T ss_pred             cEEEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEECCCCc----------------cccChHHHHHHHHHHHH
Confidence            488999999999999999999999999999  789999999988773                33346889999999999


Q ss_pred             cCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCC
Q psy7914         268 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPI  314 (365)
Q Consensus       268 lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~  314 (365)
                      ||+.+|  ..+  ....|.+...+...+|.++|++|.     ++|..
T Consensus       113 LGi~~D--~~~--~qS~y~~~~ye~A~~Li~~G~AY~-----C~cs~  150 (574)
T PTZ00437        113 MGWKPD--WVT--FSSDYFDQLHEFAVQLIKDGKAYV-----DHSTP  150 (574)
T ss_pred             cCCCCC--CCC--cCchhHHHHHHHHHHHHHcCCEEE-----cCCCH
Confidence            999776  443  334556666677889999999984     56654

>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed

Probab=99.19  E-value=4.8e-11  Score=115.55  Aligned_cols=102  Identities=24%  Similarity=0.242  Sum_probs=82.1

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG  267 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~  267 (365)
                      .+++.++|.|||+|||||+|++++...+||  ...|.-++++-.+|.                .....++.+.|.++|++
T Consensus         5 ~v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar--~~~G~~iLRiEDtD~----------------~R~~~~~~~~I~~dL~w   66 (299)
T PRK05710          5 PYIGRFAPSPSGPLHFGSLVAALGSWLDAR--AHGGRWLLRIEDIDP----------------PREVPGAADAILADLEW   66 (299)
T ss_pred             ceeEEeCcCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEECcCCC----------------CccchHHHHHHHHHHHH
Confidence            478999999999999999999999999999  779999999988875                22335778999999999


Q ss_pred             cCCCccCCC-cccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCC
Q psy7914         268 FGCKFNWES-ELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDN  316 (365)
Q Consensus       268 lgI~~D~~~-~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~  316 (365)
                      ||+.+|  . .++.+  .+.+...++.++|.++|++|     .+||...+
T Consensus        67 lGl~wD--e~~~~QS--~r~~~Y~~~~~~L~~~G~aY-----~C~Ctr~e  107 (299)
T PRK05710         67 LGLHWD--GPVLYQS--QRHDAYRAALDRLRAQGLVY-----PCFCSRKE  107 (299)
T ss_pred             CCCCCC--CCceEee--ccHHHHHHHHHHHHHCCCce-----ecCCCHHH
Confidence            999666  3 33333  34566789999999999988     34565543

>PRK05347 glutaminyl-tRNA synthetase; Provisional

Probab=99.19  E-value=5.2e-11  Score=123.10  Aligned_cols=96  Identities=18%  Similarity=0.263  Sum_probs=78.1

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG  267 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~  267 (365)
                      .+++.++|.|||+|||||||++++...+||  +..|.-++++-.+|.                ..-..++.+.|.++|++
T Consensus        29 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLRieDTd~----------------~r~~~e~~~~I~~dL~w   90 (554)
T PRK05347         29 RVHTRFPPEPNGYLHIGHAKSICLNFGLAQ--DYGGKCNLRFDDTNP----------------EKEDQEYVDSIKEDVRW   90 (554)
T ss_pred             ceEEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEECCCCC----------------CcCChHHHHHHHHHHHH
Confidence            488999999999999999999999999999  789999999988874                22346889999999999


Q ss_pred             cCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914         268 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  304 (365)
Q Consensus       268 lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~  304 (365)
                      ||+.+| ...+.++  .+.+...+...+|.++|++|.
T Consensus        91 LGi~~d-~~~~~qS--~r~~~~y~~a~~Li~~G~AY~  124 (554)
T PRK05347         91 LGFDWS-GELRYAS--DYFDQLYEYAVELIKKGKAYV  124 (554)
T ss_pred             cCCCCC-CCceeee--cCHHHHHHHHHHHHHcCCEee
Confidence            999775 1223333  344555567789999999984

>TIGR00440 glnS glutaminyl-tRNA synthetase

Probab=99.16  E-value=1.1e-10  Score=120.27  Aligned_cols=95  Identities=19%  Similarity=0.260  Sum_probs=77.2

Q ss_pred             EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914         189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF  268 (365)
Q Consensus       189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l  268 (365)
                      +++.++|.|||+|||||||++++...+||  +..|.-++++-.+|.                ..-..++.+.|.++|++|
T Consensus         1 V~tRFaPsPtG~LHiG~ar~al~n~~~A~--~~~G~~iLRieDTd~----------------~r~~~e~~~~I~~dL~wL   62 (522)
T TIGR00440         1 VHTRFPPEPNGYLHIGHAKSICLNFGYAK--YYNGTCNLRFDDTNP----------------VKEDPEYVESIKRDVEWL   62 (522)
T ss_pred             CeEecCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEEcCCCc----------------ccCChHHHHHHHHHHHHc
Confidence            36889999999999999999999999999  889999999988885                223368899999999999


Q ss_pred             CCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914         269 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  304 (365)
Q Consensus       269 gI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~  304 (365)
                      |+.+| ...+.  .+.+.+...+...+|.++|.+|.
T Consensus        63 G~~~d-~~~~~--qS~~~~~~~~~a~~Li~~G~AY~   95 (522)
T TIGR00440        63 GFKWE-GKIRY--SSDYFDELYRYAEELIKKGLAYV   95 (522)
T ss_pred             CCCCC-CCceE--ccccHHHHHHHHHHHHHcCCEEe
Confidence            99775 12233  33345556677899999999984

This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.

>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional

Probab=99.15  E-value=7.8e-11  Score=126.39  Aligned_cols=96  Identities=20%  Similarity=0.317  Sum_probs=79.9

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG  267 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~  267 (365)
                      .+++.++|.|||+|||||+|++++...+||  +..|.-++++-.+|.                ..-..++.+.|.++|+|
T Consensus        31 ~v~tRFaPsPtG~lHiGhar~alln~~~A~--~~~G~~~LR~eDTd~----------------~r~~~e~~~~I~~dl~w   92 (771)
T PRK14703         31 RVVTRFPPEPNGYLHIGHAKSILLNFGIAR--DYGGRCHLRMDDTNP----------------ETEDTEYVEAIKDDVRW   92 (771)
T ss_pred             ceEEEeCcCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCCCCC----------------CcCChHHHHHHHHHHHH
Confidence            488999999999999999999999999999  889999999988874                22336889999999999


Q ss_pred             cCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914         268 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  304 (365)
Q Consensus       268 lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~  304 (365)
                      ||+.+|  .. .+..+.|.+...+...+|.++|++|.
T Consensus        93 LG~~wd--~~-~~~qS~~~~~y~~~a~~Li~~G~aY~  126 (771)
T PRK14703         93 LGFDWG--EH-LYYASDYFERMYAYAEQLIKMGLAYV  126 (771)
T ss_pred             cCCCCC--CC-ceEeecCHHHHHHHHHHHHHcCCccc
Confidence            999776  32 12334466677889999999999884

>KOG1195|consensus

Probab=99.15  E-value=1.9e-10  Score=115.81  Aligned_cols=177  Identities=18%  Similarity=0.152  Sum_probs=130.9

Q ss_pred             EEEecCccccccccccccCcceeEEEccchhhhhcCCcccccCCCCcccchhhHHHHHHhhhHHHHHhhcCCCCCccccC
Q psy7914          95 YITVKSSHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLKLVCDGVYRRRRSISSPSDFGVSS  174 (365)
Q Consensus        95 f~~l~~~h~l~~~~~a~~~gf~n~~i~n~~~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~g~~~  174 (365)
                      +.+++-+..+.+...-+  .|++|++......                        +.+...+.      ...+.||.++
T Consensus        58 ~e~~~~~~~v~~~~~~~--~~~~f~ln~~~~~------------------------k~~l~~i~------~~~~~~g~~~  105 (567)
T KOG1195|consen   58 AEALPCNRIVEEVGASG--PFVQFFLNRRRLI------------------------KSVLPIIE------EQREKYGKNE  105 (567)
T ss_pred             HHhcccccchHHHhcCC--CeEEEEecHHHHH------------------------HHHHHHHH------HHhcccCccc
Confidence            44444544455555555  8999999887766                        33322221      2446788877


Q ss_pred             CCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHH---HcC----
Q psy7914         175 VGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAH---QHG----  247 (365)
Q Consensus       175 ~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~---~~g----  247 (365)
                      .+.++       +++|++.+||.+.|+|+||.|..++|-.+++..+..|++|+++.|.-|+|.++...|.   +.|    
T Consensus       106 ~~~~k-------~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g~~~~g~e~~  178 (567)
T KOG1195|consen  106 LGSGK-------KIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALGFQLYGDEEE  178 (567)
T ss_pred             cccCc-------eEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhccHHhhCchhh
Confidence            66655       7899999999999999999999999999999999999999999999999988877761   111    


Q ss_pred             --CCH-------------------------------------------HHHHHHHHHHHHHHHHhcCCCcc-CCCccccc
Q psy7914         248 --IDP-------------------------------------------REWTVGNIATMKSQLQGFGCKFN-WESELATC  281 (365)
Q Consensus       248 --~~~-------------------------------------------~e~~~~~~~~i~~~l~~lgI~~D-~~~~~~t~  281 (365)
                        .+|                                           +++.+--+....+.+++|||.|| |+-+.   
T Consensus       179 L~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~FD~y~gES---  255 (567)
T KOG1195|consen  179 LQLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKFDEYSGES---  255 (567)
T ss_pred             hccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhceeeeeccchH---
Confidence              011                                           11334555677788999999999 44332   


Q ss_pred             ChhhHHHHHHHHHHHHHCCCEEEeCcceeecCC
Q psy7914         282 DPKYYKWTQALFLDLYHAGLVYRKEATVNWDPI  314 (365)
Q Consensus       282 d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~  314 (365)
                       .-+.+..+.+...+..+|++.+.++...++-.
T Consensus       256 -qv~~e~~~~~~d~~rs~~l~~e~dG~~vidL~  287 (567)
T KOG1195|consen  256 -QVSNEKMQEALDLLRSANLTEEIDGTIVIDLS  287 (567)
T ss_pred             -HHHHHHHHHHHHHHHhcCCcccCCCcEEEEec
Confidence             24567788899999999988888888877665

>PLN02907 glutamate-tRNA ligase

Probab=99.15  E-value=1.6e-10  Score=123.88  Aligned_cols=97  Identities=20%  Similarity=0.314  Sum_probs=82.5

Q ss_pred             CceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy7914         186 DNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL  265 (365)
Q Consensus       186 ~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l  265 (365)
                      .+.+++.++|.|||+|||||||++++...+||  +..|.-++++-.+|.                ..-..++.+.|.++|
T Consensus       211 ~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR~eDTdp----------------~r~~~e~~~~I~~dl  272 (722)
T PLN02907        211 EGKVCTRFPPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVRFDDTNP----------------SKESDEFVENILKDI  272 (722)
T ss_pred             CCceEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEecCCCC----------------CcCChHHHHHHHHHH
Confidence            35689999999999999999999999999999  889999999988884                223368899999999


Q ss_pred             HhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914         266 QGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  304 (365)
Q Consensus       266 ~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~  304 (365)
                      ++||+.+|  ..+.++  .+.+...+...+|.++|.+|.
T Consensus       273 ~wLG~~~d--~~~~qS--~r~~~y~~~a~~Li~~G~aY~  307 (722)
T PLN02907        273 ETLGIKYD--AVTYTS--DYFPQLMEMAEKLIKEGKAYV  307 (722)
T ss_pred             HHcCCCCC--Cccccc--ccHHHHHHHHHHHHHcCCeee
Confidence            99999776  554444  466677899999999999985

>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional

Probab=99.13  E-value=1.1e-10  Score=118.17  Aligned_cols=98  Identities=16%  Similarity=0.265  Sum_probs=80.2

Q ss_pred             EecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7914         191 LSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC  270 (365)
Q Consensus       191 ~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI  270 (365)
                      +.++|.|||+|||||+|++++.-.+||  +..|.-++++-.+|.                .....++.+.|.++|+|||+
T Consensus         2 ~RFAPSPTG~LHiG~artAL~n~l~Ar--~~gG~fiLRiEDTD~----------------~R~~~e~~~~I~~~L~WlGl   63 (433)
T PRK12410          2 LRFAPSPTGDMHIGNLRAAIFNYIVAK--QQNEDFLIRIEDTDK----------------ERNIEGKDKEILEILNLFGI   63 (433)
T ss_pred             CccCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCC----------------CcCChHHHHHHHHHHHHcCC
Confidence            567999999999999999999999999  889999999988885                22346788999999999999


Q ss_pred             CccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCC
Q psy7914         271 KFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPID  315 (365)
Q Consensus       271 ~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~  315 (365)
                      .+|  ..++.++  +.+.-.++.++|.++|.+|     .|||...
T Consensus        64 ~wD--e~y~QSe--R~~~Y~~~a~~Li~~G~AY-----~C~cs~e   99 (433)
T PRK12410         64 SWD--KLVYQSE--NLKFHRQMAEKLLSEKKAF-----ACFCSEE   99 (433)
T ss_pred             CCC--CCeehhc--cHHHHHHHHHHHHHcCCee-----eecCCHH
Confidence            666  6555554  3455678999999999988     3456554

>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family

Probab=99.11  E-value=1.7e-10  Score=118.49  Aligned_cols=95  Identities=18%  Similarity=0.234  Sum_probs=77.3

Q ss_pred             EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914         189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF  268 (365)
Q Consensus       189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l  268 (365)
                      +++.++|.|||+|||||+|++++...+||  ...|.-++++-.+|.                .....++.+.|.++|+||
T Consensus         2 v~~RfAPsPtG~lHiG~~rtal~n~l~Ar--~~~G~~iLRieDtD~----------------~R~~~~~~~~i~~~L~wl   63 (470)
T TIGR00464         2 VRTRFAPSPTGYLHIGGARTALFNYLFAK--HTGGEFILRIEDTDL----------------ERNIEEAEEAILEGLKWL   63 (470)
T ss_pred             ceEeeCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCC----------------ccCChHHHHHHHHHHHHC
Confidence            57899999999999999999999999999  889999999988874                233457889999999999


Q ss_pred             CCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914         269 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  304 (365)
Q Consensus       269 gI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~  304 (365)
                      |+.+|- ..++.++  +.+...++..+|.++|++|.
T Consensus        64 Gl~~de-~~~~QS~--r~~~y~~~~~~L~~~g~aY~   96 (470)
T TIGR00464        64 GISWDE-GPYYQSQ--RLDIYKKYAKELLEEGLAYR   96 (470)
T ss_pred             CCCCCC-CeeehhC--CHHHHHHHHHHHHHcCCEEe
Confidence            996651 2233333  34556788999999999983

The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.

>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase

Probab=99.09  E-value=3.7e-10  Score=105.58  Aligned_cols=90  Identities=21%  Similarity=0.335  Sum_probs=75.1

Q ss_pred             EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914         189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF  268 (365)
Q Consensus       189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l  268 (365)
                      +++.++|.|||+||+||+|++++...+||  +..|.-++++-.+|.                ..-..++.+.|.++|++|
T Consensus         2 v~~RFAPsPtG~lHlG~~r~al~n~l~Ar--~~~G~~iLRieDtD~----------------~R~~~~~~~~I~~dL~wl   63 (230)
T cd00418           2 VVTRFAPSPTGYLHIGHARTALFNFAFAR--KYGGKFILRIEDTDP----------------ERSRPEYVESILEDLKWL   63 (230)
T ss_pred             ceEEeCCCCCCcccHHHHHHHHHHHHHHH--HcCCeEEEEeCcCCC----------------CCCChHHHHHHHHHHHHc
Confidence            57899999999999999999999999999  789999999988885                223367899999999999


Q ss_pred             CCCccCCC-cccccChhhHHHHHHHHHHHHHCC
Q psy7914         269 GCKFNWES-ELATCDPKYYKWTQALFLDLYHAG  300 (365)
Q Consensus       269 gI~~D~~~-~~~t~d~~~~~~v~~~f~~L~~kG  300 (365)
                      |+.+|  . .+..+  .+.+...+.+++|.++|
T Consensus        64 Gl~wd--~~~~~QS--~r~~~y~~~~~~L~~~g   92 (230)
T cd00418          64 GLDWD--EGPYRQS--DRFDLYRAYAEELIKKG   92 (230)
T ss_pred             CCCCC--CCeeehh--cCHHHHHHHHHHHHHcC
Confidence            99776  4 33333  34566678999999999

Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind

>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed

Probab=99.08  E-value=2.7e-10  Score=117.25  Aligned_cols=94  Identities=19%  Similarity=0.224  Sum_probs=79.2

Q ss_pred             EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914         189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF  268 (365)
Q Consensus       189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l  268 (365)
                      +++.++|.|||+|||||+|++++.-.+||  +..|.-++++-.+|.                ......+.+.|.++|+||
T Consensus         5 v~~RfAPSPtG~lHiG~~rtal~n~l~Ar--~~~G~fiLRieDtD~----------------~R~~~~~~~~i~~~L~wl   66 (476)
T PRK01406          5 VRTRFAPSPTGYLHIGGARTALFNWLFAR--HHGGKFILRIEDTDQ----------------ERSTEEAEEAILEGLKWL   66 (476)
T ss_pred             eeEEeCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCC----------------CCCChHHHHHHHHHHHHC
Confidence            78999999999999999999999999999  889999999988885                233467889999999999


Q ss_pred             CCCccCCCc--------ccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914         269 GCKFNWESE--------LATCDPKYYKWTQALFLDLYHAGLVYR  304 (365)
Q Consensus       269 gI~~D~~~~--------~~t~d~~~~~~v~~~f~~L~~kG~Iy~  304 (365)
                      |+.+|  ..        ++.+  .+.+...++.++|.++|++|.
T Consensus        67 Gl~~D--e~p~~~~~gpy~QS--~r~~~y~~~~~~L~~~g~aY~  106 (476)
T PRK01406         67 GLDWD--EGPDGGPYGPYRQS--ERLDIYKEYAEQLLEEGKAYY  106 (476)
T ss_pred             CCCCC--CCCccCCCCceehh--cCHHHHHHHHHHHHHcCCeee
Confidence            99766  33        3333  345666899999999999984

>PLN02627 glutamyl-tRNA synthetase

Probab=99.06  E-value=6.1e-10  Score=114.94  Aligned_cols=101  Identities=20%  Similarity=0.225  Sum_probs=82.3

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG  267 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~  267 (365)
                      -+++.++|.|||+|||||+|++++...+||  +..|.-++++-.+|-                .....++.+.|.++|+|
T Consensus        45 ~vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLRIEDTD~----------------~R~~~e~~~~I~~~L~W  106 (535)
T PLN02627         45 PVRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTDL----------------ARSTKESEEAVLRDLKW  106 (535)
T ss_pred             ceEEEeCCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC----------------CCCChHHHHHHHHHHHH
Confidence            488999999999999999999999999999  889999999988884                23346789999999999


Q ss_pred             cCCCccCCCc---------ccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCC
Q psy7914         268 FGCKFNWESE---------LATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPID  315 (365)
Q Consensus       268 lgI~~D~~~~---------~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~  315 (365)
                      |||.+|  ..         ++.+  .+.+.-.++.++|.++|++|     .|||...
T Consensus       107 LGl~wD--egp~~gg~~gpy~QS--eR~~~Y~~~a~~Li~~G~AY-----~CfCs~e  154 (535)
T PLN02627        107 LGLDWD--EGPDVGGEYGPYRQS--ERNAIYKQYAEKLLESGHVY-----PCFCTDE  154 (535)
T ss_pred             cCCCCC--cCcccCCCCCCeeee--ccHHHHHHHHHHHHHcCCee-----eccCChH
Confidence            999766  32         2333  34566688999999999988     3466554

>PRK14895 gltX glutamyl-tRNA synthetase; Provisional

Probab=99.06  E-value=4.7e-10  Score=115.51  Aligned_cols=101  Identities=22%  Similarity=0.277  Sum_probs=81.4

Q ss_pred             EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914         189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF  268 (365)
Q Consensus       189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l  268 (365)
                      +++.++|.|||+|||||+|++++.-.+||  +..|.-++++-.+|-                .....++.+.|.++|+||
T Consensus         5 vrtRFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD~----------------~R~~~~~~~~i~~~L~WL   66 (513)
T PRK14895          5 VITRFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRIEDTDK----------------ERSTKEAVEAIFSGLKWL   66 (513)
T ss_pred             eeEeeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCCc----------------cccChHHHHHHHHHHHHc
Confidence            67999999999999999999999999999  889999999988873                233467889999999999


Q ss_pred             CCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCC
Q psy7914         269 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPID  315 (365)
Q Consensus       269 gI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~  315 (365)
                      |+.+|- ..++.++  ..+...+..++|.++|.+|.     |||...
T Consensus        67 Gl~wDe-~py~QSe--R~~~Y~~~a~~Li~~G~AY~-----CfCt~e  105 (513)
T PRK14895         67 GLDWNG-EVIFQSK--RNNLYKEAALKLLQNGKAYY-----CFTRQE  105 (513)
T ss_pred             CCCCCC-CceeEeC--cHHHHHHHHHHHHHcCCeEE-----ecCcHH
Confidence            996651 2344443  34566789999999999883     466554

>PLN02859 glutamine-tRNA ligase

Probab=99.05  E-value=5.8e-10  Score=119.02  Aligned_cols=95  Identities=20%  Similarity=0.227  Sum_probs=75.9

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG  267 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~  267 (365)
                      .+++.+||.|||+|||||+|++++...+||  .+.|.-++|+-.+|.                ..-..++.+.|.++|+|
T Consensus       264 ~V~tRFaPsPtG~LHiGharaallN~~~Ar--~~~G~~~LRieDTdp----------------~r~~~e~~~~I~edL~W  325 (788)
T PLN02859        264 KVYTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGCCYLRFDDTNP----------------EAEKKEYIDHIEEIVEW  325 (788)
T ss_pred             ceEEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEecCCCC----------------CccchHHHHHHHHHHHH
Confidence            488999999999999999999999999999  789999999988874                23346889999999999


Q ss_pred             cCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914         268 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  304 (365)
Q Consensus       268 lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~  304 (365)
                      ||+.+|  ..+.+++  |.+..-+...+|.++|++|.
T Consensus       326 LG~~~d--~~~~qSd--~f~~~Y~~A~~Li~~G~AY~  358 (788)
T PLN02859        326 MGWEPF--KITYTSD--YFQELYELAVELIRRGHAYV  358 (788)
T ss_pred             cCCCCC--CcccccH--hHHHHHHHHHHHHHcCCeEe
Confidence            998554  5444433  33333345667999999984

>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase

Probab=98.96  E-value=2.5e-09  Score=100.73  Aligned_cols=90  Identities=18%  Similarity=0.225  Sum_probs=73.1

Q ss_pred             EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914         189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF  268 (365)
Q Consensus       189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l  268 (365)
                      +++.++|.|||+|||||++++++...+||  +..|.-++++-.+|.                ..-..++.+.|.++|++|
T Consensus         2 v~~RfAPsPtG~LHlG~~~~al~n~l~ar--~~~G~~ilRieDtd~----------------~r~~~~~~~~i~~dL~wl   63 (239)
T cd00808           2 VRTRFAPSPTGFLHIGGARTALFNYLFAR--KHGGKFILRIEDTDQ----------------ERSVPEAEEAILEALKWL   63 (239)
T ss_pred             ceEEeCCCCCCcccHHHHHHHHHHHHHHH--HcCCeEEEEECcCCC----------------CCCchHHHHHHHHHHHHc
Confidence            57899999999999999999999999999  778988888888774                122357789999999999


Q ss_pred             CCCccCCC---------cccccChhhHHHHHHHHHHHHHCC
Q psy7914         269 GCKFNWES---------ELATCDPKYYKWTQALFLDLYHAG  300 (365)
Q Consensus       269 gI~~D~~~---------~~~t~d~~~~~~v~~~f~~L~~kG  300 (365)
                      ||.+|  .         .+..++  ..+...+++++|.++|
T Consensus        64 Gl~~d--~~~~~~g~~~~~~QS~--r~~~y~~~~~~L~~~g  100 (239)
T cd00808          64 GLDWD--EGPDVGGPYGPYRQSE--RLEIYRKYAEKLLEKG  100 (239)
T ss_pred             CCCCC--cCCccCCCCCCEeeeC--CHHHHHHHHHHHHHcC
Confidence            99666  5         344443  4556678889999888

Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>KOG1147|consensus

Probab=98.75  E-value=5.3e-08  Score=98.89  Aligned_cols=101  Identities=21%  Similarity=0.269  Sum_probs=85.6

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      +.+++.+||-|+|.||||||..+++.--++-  +.+|.-+.+.-.+|.                ..=.+++.+.|.+|+.
T Consensus       199 GkVv~RFPPEpSGyLHIGHAKAALLNqYfa~--~~~G~LIvRFDDTNP----------------aKE~~eFe~~IleDl~  260 (712)
T KOG1147|consen  199 GKVVTRFPPEPSGYLHIGHAKAALLNQYFAQ--AYQGKLIVRFDDTNP----------------AKENEEFEDVILEDLS  260 (712)
T ss_pred             CceEEecCCCCCceeehhhHHHHHHHHHHHH--hcCceEEEEecCCCc----------------chhhHHHHHHHHHHHH
Confidence            4689999999999999999999999999887  888988888766664                3334688899999999


Q ss_pred             hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcce
Q psy7914         267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATV  309 (365)
Q Consensus       267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v  309 (365)
                      .|||..|    ..|+.+.|-+.+.....+|.+.|-+|..+.+.
T Consensus       261 ~LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp~  299 (712)
T KOG1147|consen  261 LLGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPT  299 (712)
T ss_pred             HhCcCcc----eeeechhhHHHHHHHHHHHHhcCcccccCCcH
Confidence            9999998    44666778899999999999999999766543

>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6

Probab=98.47  E-value=2.3e-07  Score=91.74  Aligned_cols=149  Identities=16%  Similarity=0.110  Sum_probs=85.2

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCC--------chHHHHHHHcCCC---------
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFG--------LPAENAAHQHGID---------  249 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G--------~~I~~~A~~~g~~---------  249 (365)
                      ..+++...-.|+|.+|||++|..+.+|+++|-||.+|++|.+++.+||.+        .|-...++-.|..         
T Consensus        23 ~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~G  102 (360)
T PF01921_consen   23 EPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPFG  102 (360)
T ss_dssp             SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TTS
T ss_pred             ccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCCC
Confidence            35667777789999999999999999999999999999999999999986        2111011111211         


Q ss_pred             -HHHHHHHHHHHHHHHHHhcCCCccCCCcccccC----h----------hhHHHHHHHHHHHHHCCCEEEeCc--ceeec
Q psy7914         250 -PREWTVGNIATMKSQLQGFGCKFNWESELATCD----P----------KYYKWTQALFLDLYHAGLVYRKEA--TVNWD  312 (365)
Q Consensus       250 -~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d----~----------~~~~~v~~~f~~L~~kG~Iy~~~~--~v~yc  312 (365)
                       ...|++.+...+.+.|+.|||.++   ++++++    -          .....+.+++.......  ...+.  ...+|
T Consensus       103 ~~~SyaeH~~~~~~~~L~~~gie~e---~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~--~~~~y~Pf~piC  177 (360)
T PF01921_consen  103 CHESYAEHFNAPFEEFLDEFGIEYE---FISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRE--RPETYSPFLPIC  177 (360)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTT---E---EEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT----TT--SEEEEE
T ss_pred             CCccHHHHHHHHHHHHHHHcCCceE---EEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcC--CCCCeeeeeeec
Confidence             256899999999999999999886   222222    1          23444555555554333  12221  23679


Q ss_pred             CCCCccccccccc-------cCCCccCCCCccEEE
Q psy7914         313 PIDNTVLADEQVD-------EQGISWRSGARVEKR  340 (365)
Q Consensus       313 ~~~~t~Ls~~eve-------~~~~c~~~g~~~e~~  340 (365)
                      +.|++.+.-.=++       +..+|..||+..+..
T Consensus       178 ~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~  212 (360)
T PF01921_consen  178 EKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVD  212 (360)
T ss_dssp             TTTEE--EEEEEEE--SSSEEEEE--TTS---EEE
T ss_pred             cccCCcccceeeEeecCCCEEEEEecCCCCEEEEe
Confidence            9999865432222       234788999977643

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.

>KOG1149|consensus

Probab=98.30  E-value=1.9e-06  Score=85.99  Aligned_cols=121  Identities=16%  Similarity=0.206  Sum_probs=87.7

Q ss_pred             EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914         189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF  268 (365)
Q Consensus       189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l  268 (365)
                      +-+.+.|-|||.||+|-+|++.+.-.+||  ...|..++++-.+|-                ...+....+.|.++|+++
T Consensus        34 VRvRFAPSPTGfLHlGgLRTALfNYLfAr--k~gGkFiLRiEDTDq----------------~R~v~gs~e~i~~~L~w~   95 (524)
T KOG1149|consen   34 VRVRFAPSPTGFLHLGGLRTALFNYLFAR--KKGGKFILRIEDTDQ----------------KRLIRGSEEAIYEDLKWA   95 (524)
T ss_pred             eEEeecCCCCcceehhhHHHHHHHHHHHH--hcCCeEEEEeccccc----------------cccccchHHHHHHHHHhc
Confidence            56788999999999999999999999999  889999999999984                233445567899999999


Q ss_pred             CCCccCCC----cccccC-hhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccc------cccc-cCCCccC
Q psy7914         269 GCKFNWES----ELATCD-PKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLAD------EQVD-EQGISWR  332 (365)
Q Consensus       269 gI~~D~~~----~~~t~d-~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~------~eve-~~~~c~~  332 (365)
                      ||.+|-..    .+-++. ..-.++-.+..++|.+.|.+|+     +||.....-+-.      .++- |+.+|..
T Consensus        96 nl~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYr-----CFCs~~rL~~lrk~A~k~~~~p~YD~kca~  166 (524)
T KOG1149|consen   96 NLDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYR-----CFCSEERLDLLRKSALKKHEIPRYDRKCAN  166 (524)
T ss_pred             CCCcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeE-----eccCHHHHHHHHHhhhccCCCCcccchhcc
Confidence            99887111    011121 2344566788889999999985     577765433322      2222 5666653

>KOG1148|consensus

Probab=98.25  E-value=2.7e-06  Score=87.49  Aligned_cols=96  Identities=21%  Similarity=0.299  Sum_probs=79.0

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      +.+++.+||-|||.|||||+-..-+.=-||+  .+.|..-++.-.+|                |+.=.+++.+.|++.-+
T Consensus       247 GkV~TRFPPEPNG~LHIGHaKAInvNFgyAk--~~~G~cyLRfDDTN----------------PEkEee~yf~sI~e~V~  308 (764)
T KOG1148|consen  247 GKVVTRFPPEPNGILHIGHAKAINVNFGYAK--AHGGVCYLRFDDTN----------------PEKEEEEYFESIKEMVA  308 (764)
T ss_pred             CeeEEeCCCCCCceeeecchhheeechhhhh--hhCCeEEEecCCCC----------------cchhhHHHHHHHHHHHH
Confidence            4689999999999999999998777777888  56888888875555                34445789999999999


Q ss_pred             hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914         267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  304 (365)
Q Consensus       267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~  304 (365)
                      |||..    .+..|+++.|-...-+.-..|+++|++|.
T Consensus       309 WLG~~----P~kvTysSDyFdqLy~~av~LIrkG~AYV  342 (764)
T KOG1148|consen  309 WLGFE----PYKVTYSSDYFDQLYELAVELIRKGKAYV  342 (764)
T ss_pred             HhCCC----ceeeecchhHHHHHHHHHHHHHhcCceeE
Confidence            99984    34668888888888888889999999984

>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]

Probab=98.15  E-value=7.3e-06  Score=83.79  Aligned_cols=86  Identities=23%  Similarity=0.320  Sum_probs=69.9

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCC--------chHHHHHHH-cCCC---------
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFG--------LPAENAAHQ-HGID---------  249 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G--------~~I~~~A~~-~g~~---------  249 (365)
                      .++...--.|+|.+|||++|..+.+|+++|-||.+|++|.+++=+||+.        +|-....++ .|+.         
T Consensus        20 ~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~G   99 (521)
T COG1384          20 EYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPFG   99 (521)
T ss_pred             cEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCcc
Confidence            4666677789999999999999999999999999999999999999987        222122222 2322         


Q ss_pred             -HHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914         250 -PREWTVGNIATMKSQLQGFGCKFN  273 (365)
Q Consensus       250 -~~e~~~~~~~~i~~~l~~lgI~~D  273 (365)
                       ...+++.+...+.+-|+.|||.+.
T Consensus       100 ~~~Sya~hf~~~f~~~l~~~Gi~~E  124 (521)
T COG1384         100 CCDSYAEHFLRPFEEFLDEFGIEVE  124 (521)
T ss_pred             ccchHHHHHHHHHHHHHHhcCCceE
Confidence             356889999999999999999876

>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family

Probab=97.95  E-value=0.00025  Score=79.07  Aligned_cols=245  Identities=14%  Similarity=0.085  Sum_probs=121.9

Q ss_pred             cceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCccccccccccccCcceeEEEccchhhhhcC
Q psy7914          51 NGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKSIVSS  130 (365)
Q Consensus        51 ~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~~~gf~n~~i~n~~~~~~~~  130 (365)
                      +++.|.|++.+.          ...|.|+|++|+|+++.+    .+++.|++..+..++.+    -.+.+......    
T Consensus       197 ~~~~ikf~~~~~----------~~~l~~aTtRPETl~g~t----av~V~P~~~Y~~~~~~~----e~~i~s~~~~~----  254 (938)
T TIGR00395       197 EYILIKFELEDG----------AFYFVAATLRPETVYGVT----NCWVNPTITYVIAEVGG----EKWITSKEAFE----  254 (938)
T ss_pred             eEEEEEEEcCCC----------ceEEEEeeCCcchhhcce----eEEECCCCcEEEEEeCC----cEEEEeHHHHH----
Confidence            568889987531          235999999999999999    99999999866554332    12222322222    


Q ss_pred             CcccccCCCCcccchhhHHHHHHhhhHHHHHhhcCCCCCccccCCCCCcCCCCCCCceEEE---ec-CCCCCCCCch--H
Q psy7914         131 DPMLRDRKKPVCGESLNQVLKLVCDGVYRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVL---SM-FPYPSGSLHM--G  204 (365)
Q Consensus       131 ~p~~r~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~---~~-~PnpnG~LHi--G  204 (365)
                        .++.....        + +++.        .+...+..|..-    ..|..++ .+.|+   ++ +-.-||-.|.  +
T Consensus       255 --~~~~q~~~--------~-~~~~--------~~~g~~l~G~~~----~~P~~~~-~ipil~~~~V~~~~GTGvV~~~Pa  310 (938)
T TIGR00395       255 --NLSYQKLK--------Y-KPIE--------EVPGKQFIGKKV----HNPVVGP-EVPILPAEFVDTTKGTGVVMSVPA  310 (938)
T ss_pred             --hhhhcccc--------e-eEEE--------EEchHhccCCEE----ECCCCCC-eeEEeecceeecCCCcceEEeCCC
Confidence              01100000        0 0000        000011112110    0111121 23333   22 5578899887  7


Q ss_pred             HHHH-H-HHhhHHHHHHHHC-------CCcEEeccCCCCCC-chHHHHHHHcCCCHH----HHHHHHHHHHHHHHHhcCC
Q psy7914         205 HVRV-Y-TISDTLARYYAMN-------GKNVFQPMGWDAFG-LPAENAAHQHGIDPR----EWTVGNIATMKSQLQGFGC  270 (365)
Q Consensus       205 Har~-~-v~~DvlaR~lr~~-------G~~V~~~~g~Dd~G-~~I~~~A~~~g~~~~----e~~~~~~~~i~~~l~~lgI  270 (365)
                      |+-. + ++.|.-.| ++.-       ..+..-+..+|..| .+......+.|+.-.    .+.+..-..+++.+ .-|+
T Consensus       311 h~p~Dy~~~~~l~~~-~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f-~~G~  388 (938)
T TIGR00395       311 HAPDDYIALEDLLHD-PEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEY-HTGV  388 (938)
T ss_pred             CCHHHHHHHHHhhhc-chhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhc-cCce
Confidence            7764 3 33443322 1111       23334455566667 444444445443211    11110011111111 0233


Q ss_pred             CccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEE-EeeeeeEeC
Q psy7914         271 KFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKR-RLSQWFIRT  349 (365)
Q Consensus       271 ~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~-~~~~~ff~L  349 (365)
                      ..+-...+.-.  .-.+.-..+.+.|.++|++....     .+      +    + .+.|.+||.+++.+ ..++|||++
T Consensus       389 m~~~~~~~~G~--~v~ear~~i~~~L~~~g~~~~~~-----~~------~----~-~~v~~R~g~~~vv~~~~~QWFi~~  450 (938)
T TIGR00395       389 MIYNIPPYKGM--KVSEAKEKVKADLIDAGLADVMY-----EF------S----E-SPVICRCGTDCIVKVVEDQWFVKY  450 (938)
T ss_pred             eccCCcccCCc--CHHHhHHHHHHHHHHCCCceEee-----ec------C----C-CCcEecCCCeEEEeccCCCCeEEc
Confidence            22100001111  11233467788899999876532     11      1    1 24466999999987 999999999


Q ss_pred             c--hhHHHHHhhhc
Q psy7914         350 T--RLANLVSLVDS  361 (365)
Q Consensus       350 s--~~~~~L~~~~~  361 (365)
                      +  ++++++.+++.
T Consensus       451 ~~~~~k~~~~~~l~  464 (938)
T TIGR00395       451 SDESWKELAHECLE  464 (938)
T ss_pred             CcHHHHHHHHHHHh
Confidence            9  59998887654

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.

>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed

Probab=97.72  E-value=0.00018  Score=80.50  Aligned_cols=58  Identities=21%  Similarity=0.419  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhh
Q psy7914         288 WTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVD  360 (365)
Q Consensus       288 ~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~  360 (365)
                      .-..+++.|.++|++.......      .         .-|.|++||.+++.+.+++|||++++++++|.++.
T Consensus       364 A~~~Ii~~L~~~g~l~~~~~~~------h---------~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~  421 (975)
T PRK06039        364 ADKEIIRDLKERGLLFKAETYE------H---------SYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELN  421 (975)
T ss_pred             hhHHHHHHHHhCCCEeeeeeec------C---------CCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhh
Confidence            3467888899999886543211      0         13789999999999999999999999999988765

>TIGR00392 ileS isoleucyl-tRNA synthetase

Probab=97.53  E-value=0.0011  Score=73.55  Aligned_cols=59  Identities=22%  Similarity=0.356  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914         288 WTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDS  361 (365)
Q Consensus       288 ~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~  361 (365)
                      .-..+++.|.++|++........               .-|.|++||.+++.+.+++||++++++++++.+.+.
T Consensus       382 a~~~ii~~L~~~g~l~~~~~~~h---------------~~p~~~R~~~~v~~~~~~QWFi~~~~~k~~~l~~~~  440 (861)
T TIGR00392       382 ANKIIIEQLKDKGLLLKAEKITH---------------SYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQIK  440 (861)
T ss_pred             hHHHHHHHHHhCCCeeeeeeEec---------------CCCccCCCCCEEEEecCccccEEcHHHHHHHHHHhC
Confidence            44678888999998754322111               125799999999999999999999999999887653

The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.

>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed

Probab=97.49  E-value=0.00065  Score=75.62  Aligned_cols=58  Identities=21%  Similarity=0.301  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCch--hHHHHHhhh
Q psy7914         288 WTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTR--LANLVSLVD  360 (365)
Q Consensus       288 ~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~--~~~~L~~~~  360 (365)
                      .-..+++.|.++|++.......      .         .-|.|++||.+++.+.+++||+++++  +++++.+.+
T Consensus       371 a~~~Ii~~L~~~g~l~~~~~~~------h---------~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~  430 (912)
T PRK05743        371 ANPKIIEKLEEKGALLKEEKIT------H---------SYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAI  430 (912)
T ss_pred             hHHHHHHHHHhCCCeeeeeeee------c---------cCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHH
Confidence            3467888899998875543211      0         12679999999999999999999998  888776654

>PTZ00419 valyl-tRNA synthetase-like protein; Provisional

Probab=97.28  E-value=0.0021  Score=72.33  Aligned_cols=59  Identities=20%  Similarity=0.227  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914         288 WTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDS  361 (365)
Q Consensus       288 ~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~  361 (365)
                      .-..+++.|.++|++.+....            ..   .-|.|.+||.++|.+.+++||++++++++++.+++.
T Consensus       362 ar~~ii~~L~~~g~l~~~~~~------------~~---~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~  420 (995)
T PTZ00419        362 CRRKIEEELKEMGLLRDKVPN------------PM---RLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVR  420 (995)
T ss_pred             HHHHHHHHHHhcCCEEeeEEe------------ec---CCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhh
Confidence            446778889999988654211            00   127799999999999999999999999999888764

>PRK12300 leuS leucyl-tRNA synthetase; Reviewed

Probab=97.15  E-value=0.0085  Score=66.78  Aligned_cols=45  Identities=7%  Similarity=-0.124  Sum_probs=36.0

Q ss_pred             ccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCccccccccc
Q psy7914          50 PNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTK  109 (365)
Q Consensus        50 ~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~  109 (365)
                      ++++.|.|+ .+.          +..|.|||++|+|+++.+    .+++.|++..+..++
T Consensus       157 ~~~~~ikf~-~~~----------~~~l~~~TtrPeTl~g~t----ai~V~P~~~Y~~~~~  201 (897)
T PRK12300        157 VEYTLIKFE-ESE----------DLILPAATLRPETIFGVT----NLWVNPDATYVKAEV  201 (897)
T ss_pred             ceEEEEEEe-CCC----------ceEEEEEECCcchhccce----EEEECCCCcEEEEEE
Confidence            566788897 221          345999999999999999    999999998766553

>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional

Probab=96.99  E-value=0.0068  Score=67.97  Aligned_cols=58  Identities=28%  Similarity=0.335  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCch-------hHHHHHhhh
Q psy7914         288 WTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTR-------LANLVSLVD  360 (365)
Q Consensus       288 ~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~-------~~~~L~~~~  360 (365)
                      .-..+++.|.++|++.......      .         .-|.|++||.|++.+.+++||++++.       +++++.+.+
T Consensus       402 a~~~Ii~~L~~~g~l~~~~~~~------h---------~yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~al~~i  466 (961)
T PRK13804        402 ANKAVIEKLIEAGLLLARGRLK------H---------SYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRALDAI  466 (961)
T ss_pred             hhHHHHHHHHhCCCccccccee------c---------CCCccCCCCCeEEEeccccccEEcCCcccchHHHHHHHHHHH
Confidence            3467788899988876432211      0         13679999999999999999999998       888766543

>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6

Probab=96.66  E-value=0.025  Score=60.35  Aligned_cols=59  Identities=24%  Similarity=0.355  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhh
Q psy7914         287 KWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVD  360 (365)
Q Consensus       287 ~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~  360 (365)
                      +.-..+++.|.++|++.......      .         .-+.|.+||.+++.+-.++||++++++++++.+..
T Consensus       335 ~ar~~ii~~L~~~g~l~~~~~~~------~---------~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~  393 (601)
T PF00133_consen  335 EAREKIIEDLKEKGLLLKIEEIE------H---------SYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEAL  393 (601)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEEEE------E---------EEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred             eccHHHHHHHHHhhhhccccccc------c---------ccceecCCCCEEEecccceeEEecHHhHHHHHhhc
Confidence            34578888899999876432110      0         12468899999999999999999999988866544

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....

>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=96.23  E-value=0.038  Score=61.25  Aligned_cols=53  Identities=21%  Similarity=0.412  Sum_probs=41.9

Q ss_pred             HHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCchhHHHHH
Q psy7914         290 QALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVS  357 (365)
Q Consensus       290 ~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~  357 (365)
                      ..+++.|.++|.+.......      .         -=|.|++|+.|+.+|.+++||..++++++++.
T Consensus       378 ~~Ii~~Lk~~g~Ll~~e~i~------H---------sYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l  430 (933)
T COG0060         378 KKIIEDLKEKGNLLKSEKIE------H---------SYPHCWRTKTPLIYRATPQWFVSVDKLRDKML  430 (933)
T ss_pred             HHHHHHHHhCCceeeeeeEE------e---------CCCcccCCCCeeEEeecchheeEHHHHHHHHH
Confidence            67788888888765442211      1         13689999999999999999999999999976

>PLN02882 aminoacyl-tRNA ligase

Probab=96.04  E-value=0.028  Score=64.18  Aligned_cols=56  Identities=13%  Similarity=0.345  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCchhHHHHHhh
Q psy7914         289 TQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLV  359 (365)
Q Consensus       289 v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~  359 (365)
                      -..+++.|.++|++.......               -.=|.|++||.|++.+..++||++++++++++.+.
T Consensus       386 ~~~Ii~~Lk~~g~L~~~~~~~---------------Hsyp~cwR~~tpli~~a~~qWFi~~~~~k~~~l~~  441 (1159)
T PLN02882        386 DKDIIAAIKAKGRLVKSGSIT---------------HSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLEN  441 (1159)
T ss_pred             hHHHHHHHHHCCCccceeeee---------------cCCCEeeCCCCEEEEEecceeEEEcHHHHHHHHHh
Confidence            367888899999876532211               01278999999999999999999999999998763

>PLN02381 valyl-tRNA synthetase

Probab=95.34  E-value=0.13  Score=58.38  Aligned_cols=59  Identities=20%  Similarity=0.238  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhh
Q psy7914         287 KWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVD  360 (365)
Q Consensus       287 ~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~  360 (365)
                      +.-..+++.|.++|++........               .-|.|++|+.++|.+-.++||++++.++++..+.+
T Consensus       428 eAr~~Ii~~L~~~g~l~~~~~~~h---------------~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av  486 (1066)
T PLN02381        428 AAREAVIEALQKKGLYRGAKNNEM---------------RLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAA  486 (1066)
T ss_pred             HHHHHHHHHHHhCCCEecceeeec---------------CCCeeCCCCceEEEeecccceEEchHHHHHHHHHH
Confidence            344678888999998875432110               13789999999999999999999999999876654

>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6

Probab=91.75  E-value=0.035  Score=43.71  Aligned_cols=35  Identities=6%  Similarity=-0.077  Sum_probs=29.4

Q ss_pred             CCCchhhhccccceEEEecCccccccccccccCcceeEEE
Q psy7914          81 PEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQI  120 (365)
Q Consensus        81 ~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~~~gf~n~~i  120 (365)
                      .+|..++...    .-.+..+..+.+.++++ |||+||+|
T Consensus        51 ~~P~~iA~~i----~~~l~~~~~i~~vev~g-pGFiN~~L   85 (85)
T PF03485_consen   51 KNPREIAEEI----AEKLEKSPIIEKVEVAG-PGFINFFL   85 (85)
T ss_dssp             S-HHHHHHHH----HHCHCTTTTEEEEEEET-TTEEEEEE
T ss_pred             CCHHHHHHHH----HHhcCCCCCEEEEEEcC-CcEEEEeC
Confidence            5789999888    67777777799999999 99999986

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found at the N terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition [].; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1F7V_A 1F7U_A 1BS2_A 2ZUE_A 2ZUF_A 1IQ0_A 3GDZ_B.

>PRK12285 tryptophanyl-tRNA synthetase; Reviewed

Probab=91.22  E-value=1.4  Score=44.35  Aligned_cols=74  Identities=26%  Similarity=0.294  Sum_probs=43.1

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      ++.+.++ --|||.|||||..   ....+.++.. .|++|....+=+ |..      ...+.++.+.. ++...+..++.
T Consensus        66 ~~~iytG-~~PSG~lHLGh~~---~~~~~~~lQ~-~g~~~~i~IaD~-ha~------~~~~~~~e~~~-~~~~~~~~~~l  132 (368)
T PRK12285         66 PFAVYTG-FMPSGPMHIGHKM---VFDELKWHQE-FGANVYIPIADD-EAY------AARGLSWEETR-EWAYEYILDLI  132 (368)
T ss_pred             CeEEEEc-cCCCCCccHHHHH---HHHHHHHHHh-cCCCEEEEecch-HHH------hcCCCCHHHHH-HHHHHHHHHHH
Confidence            4555444 3466999999964   3344555554 788876654433 221      11145555544 34444667888


Q ss_pred             hcCCCcc
Q psy7914         267 GFGCKFN  273 (365)
Q Consensus       267 ~lgI~~D  273 (365)
                      ++|+..+
T Consensus       133 A~G~Dp~  139 (368)
T PRK12285        133 ALGFDPD  139 (368)
T ss_pred             HhCCCcc
Confidence            9999766

>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase

Probab=91.04  E-value=0.97  Score=43.68  Aligned_cols=67  Identities=24%  Similarity=0.235  Sum_probs=41.0

Q ss_pred             CCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914         196 YPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN  273 (365)
Q Consensus       196 npnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D  273 (365)
                      -|||.|||||..+++..  +.+ +...|+++.+..+ |.|..-      ....+++ -..++...+.+++.++|+..+
T Consensus         7 ~PTG~lHLG~~~~al~~--~~~-lQ~ag~~~~~~Ia-D~ha~t------~~~~~~~-~~~~~~~~~~~~~lA~G~dp~   73 (280)
T cd00806           7 QPSGSLHLGHYLGAFRF--WVW-LQEAGYELFFFIA-DLHALT------VKQLDPE-ELRQNTRENAKDYLACGLDPE   73 (280)
T ss_pred             CCCchhhHHHHHHHHHH--HHH-HHhCCCCEEEEec-chHHHh------CCCCCHH-HHHHHHHHHHHHHHHcCCCcc
Confidence            58999999999886543  222 2334888766643 222220      0112443 345666778888999999665

Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding

>PRK12284 tryptophanyl-tRNA synthetase; Reviewed

Probab=90.87  E-value=0.96  Score=46.35  Aligned_cols=84  Identities=14%  Similarity=0.051  Sum_probs=48.5

Q ss_pred             CCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914         194 FPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN  273 (365)
Q Consensus       194 ~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D  273 (365)
                      ---|||.|||||..+++-.  ..+.+...|+++.+.. .|-|-.-       ...+|.++.+. ...+..++-+.|+..+
T Consensus         8 GiqPTG~lHLGNylGaik~--~v~lq~q~~~~~~~~I-ADlHAlT-------~~~dp~~lr~~-~~e~aa~~LA~GlDPe   76 (431)
T PRK12284          8 GITTTGTPHLGNYAGAIRP--AIAASRQPGVESFYFL-ADYHALI-------KCDDPARIQRS-TLEIAATWLAAGLDPE   76 (431)
T ss_pred             EecCCCcchHHHHHHHHHH--HHHHHHhCCCcEEEEe-echhhcc-------CCCCHHHHHHH-HHHHHHHHHHhCCCcc
Confidence            3458999999998887653  2333344588865542 2333221       12456555544 3447888899999776


Q ss_pred             CCCcccccC-hhhHHH
Q psy7914         274 WESELATCD-PKYYKW  288 (365)
Q Consensus       274 ~~~~~~t~d-~~~~~~  288 (365)
                      -..++..++ +.|.+.
T Consensus        77 k~~if~QSdvpeh~EL   92 (431)
T PRK12284         77 RVTFYRQSDIPEIPEL   92 (431)
T ss_pred             ceEEEECCcchhHHHH
Confidence            222333444 454433

>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase

Probab=90.76  E-value=0.47  Score=45.56  Aligned_cols=72  Identities=24%  Similarity=0.254  Sum_probs=44.1

Q ss_pred             CCCCC-CCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCC--CchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC
Q psy7914         195 PYPSG-SLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAF--GLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCK  271 (365)
Q Consensus       195 PnpnG-~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~--G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~  271 (365)
                      --||| .|||||..+.   -.+.+++++ |++|....+=.++  |.+.-...++.+.++.+ ...+...+.+++.++|..
T Consensus         7 ~~PTg~~lHLG~~~~~---~~~~~lq~~-g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~-i~~~~~~~~~~~~a~g~~   81 (269)
T cd00805           7 FDPTAPSLHLGHLVPL---MKLRDFQQA-GHEVIVLIGDATAMIGDPSGKSEERKLLDLEL-IRENAKYYKKQLKAILDF   81 (269)
T ss_pred             eCCCCCcccHHHHHHH---HHHHHHHHC-CCeEEEEECCCeeecCCCCCccccccCCCHHH-HHHHHHHHHHHHHHHHcc
Confidence            45899 8999998764   356666664 9887776654332  11221112222344443 356667788889998875

Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.

>COG1656 Uncharacterized conserved protein [Function unknown]

Probab=90.68  E-value=0.33  Score=43.21  Aligned_cols=93  Identities=14%  Similarity=0.038  Sum_probs=47.5

Q ss_pred             HHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHH
Q psy7914         214 TLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALF  293 (365)
Q Consensus       214 vlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f  293 (365)
                      -|||+||+.||++.+..-.  ....|...+.+.|.=   +...-...++..  ++|+..     +...+....+.+.+++
T Consensus        17 ~LARwLRllGydt~~~~~~--~d~~i~~i~~~e~rI---llTRDr~L~~r~--k~g~~~-----i~i~~~s~~~Ql~e~~   84 (165)
T COG1656          17 KLARWLRLLGYDTVYSSNE--SDDEIILIAKKEGRI---LLTRDRELYKRA--KLGIKA-----ILIRSDSIEEQLAEFL   84 (165)
T ss_pred             HHHHHHHHcCCceeeeccC--CcHHHHHHHhcCCeE---EEeccHHHHHHh--hccCce-----EEEeCCCHHHHHHHHH
Confidence            3799999999999999722  223455555554410   000011222222  456632     2222333455666666


Q ss_pred             HHHHHCCCEEEeCcceeecCCCCccccc
Q psy7914         294 LDLYHAGLVYRKEATVNWDPIDNTVLAD  321 (365)
Q Consensus       294 ~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~  321 (365)
                      .++-.++.+...   .-=||.|+..|..
T Consensus        85 ~~~~l~~~~~~e---~~RCp~CN~~L~~  109 (165)
T COG1656          85 ARLGLKPRLFPE---FSRCPECNGELEK  109 (165)
T ss_pred             HHhccchhcccc---cccCcccCCEecc
Confidence            666555422221   2237778776553

>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase

Probab=90.32  E-value=1.2  Score=42.82  Aligned_cols=71  Identities=27%  Similarity=0.315  Sum_probs=41.0

Q ss_pred             CCCC-CCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCC--CchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC
Q psy7914         196 YPSG-SLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAF--GLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCK  271 (365)
Q Consensus       196 npnG-~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~--G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~  271 (365)
                      -||| .|||||..+   -..+.++. ..|+++.+..|=.++  |.|.-...++.-.++ +-+.++...+.+++.++|+.
T Consensus         7 ~PTg~~lHlGh~~~---l~~~~~lq-~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~-~~i~~n~~~~~~~~~a~g~d   80 (273)
T cd00395           7 DPTADSLHIGHLIG---LLTFRRFQ-HAGHRPIFLIGGQTGIIGDPSGKKSERTLNDP-EEVRQNIRRIAAQYLAVGIF   80 (273)
T ss_pred             cCCCCCccHHHHHH---HHHHHHHH-HCCCCEEEEEecCceeeCCCCCccccccCCCH-HHHHHHHHHHHHHHHHhcCc
Confidence            4899 699999777   23344443 368888776652211  111101111111233 44456678899999999986

Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.

>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function

Probab=90.15  E-value=0.53  Score=41.04  Aligned_cols=31  Identities=23%  Similarity=0.282  Sum_probs=23.3

Q ss_pred             HHHHHHHCCCcEEeccCCCCCCchHHHHHHHcC
Q psy7914         215 LARYYAMNGKNVFQPMGWDAFGLPAENAAHQHG  247 (365)
Q Consensus       215 laR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g  247 (365)
                      +||+||+.|++|.+....+|  ..|...|.+++
T Consensus        12 Lar~LR~lG~Dt~~~~~~~D--~~il~~A~~e~   42 (147)
T PF01927_consen   12 LARWLRLLGYDTLYSRDIDD--DEILELAREEG   42 (147)
T ss_pred             HHHHHHHCCCcEEEeCCCCh--HHHHHHhhhCC
Confidence            79999999999999887654  44555555544

The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=88.54  E-value=0.81  Score=40.52  Aligned_cols=54  Identities=9%  Similarity=0.010  Sum_probs=37.9

Q ss_pred             CCCEEEeCcceeecCCCCcccccccc-ccCCCccCCCCccEEEEeeeeeEeCchhHHHHHhh
Q psy7914         299 AGLVYRKEATVNWDPIDNTVLADEQV-DEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLV  359 (365)
Q Consensus       299 kG~Iy~~~~~v~yc~~~~t~Ls~~ev-e~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~  359 (365)
                      +-+-++.+...|.||.|+.-++-.++ +.+..|+.||.+++.       ++=+...+.|++-
T Consensus        99 ~~l~~e~~~~~Y~Cp~c~~r~tf~eA~~~~F~Cp~Cg~~L~~-------~dn~~~i~~l~~~  153 (158)
T TIGR00373        99 EKLEFETNNMFFICPNMCVRFTFNEAMELNFTCPRCGAMLDY-------LDNSEAIEKLEEQ  153 (158)
T ss_pred             HHHhhccCCCeEECCCCCcEeeHHHHHHcCCcCCCCCCEeee-------ccCHHHHHHHHHH
Confidence            33555667788899999987776665 357899999999875       3444555555443

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PLN02886 aminoacyl-tRNA ligase

Probab=87.90  E-value=2  Score=43.62  Aligned_cols=66  Identities=18%  Similarity=0.183  Sum_probs=40.0

Q ss_pred             CCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914         195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN  273 (365)
Q Consensus       195 PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D  273 (365)
                      --|||.+||||..+++  .-+..+.  .|+++.+. =.|-|-.       ....++.++. ++...+..+|-++|+..+
T Consensus        53 iqPSG~lHLGnylGai--~~~v~lQ--~~~~~~~~-IADlHAl-------t~~~~~~~lr-~~~~~~~a~~lA~GlDP~  118 (389)
T PLN02886         53 VQPTGSIHLGNYLGAI--KNWVALQ--ETYDTFFC-VVDLHAI-------TLPHDPRELG-KATRSTAAIYLACGIDPS  118 (389)
T ss_pred             ECCCCccHHHHHHHHH--HHHHHHh--ccCCEEEE-EecHHHh-------hCCCCHHHHH-HHHHHHHHHHHHcCcCcc
Confidence            3578999999988876  2333443  37776433 3333322       1123555444 444557788899999776

>PRK05912 tyrosyl-tRNA synthetase; Validated

Probab=87.08  E-value=1.8  Score=44.17  Aligned_cols=72  Identities=26%  Similarity=0.281  Sum_probs=40.7

Q ss_pred             EecCCCCCCC-CchHHHHHHHHhhHHHHHHHHCCCcEEeccCC------CCCCchHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy7914         191 LSMFPYPSGS-LHMGHVRVYTISDTLARYYAMNGKNVFQPMGW------DAFGLPAENAAHQHGIDPREWTVGNIATMKS  263 (365)
Q Consensus       191 ~~~~PnpnG~-LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~------Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~  263 (365)
                      .+..--|||+ |||||...   -..+.++ ...|+++.+..|-      |+.|...+.    ...+ .+.+..+...|++
T Consensus        36 vy~G~dPTg~slHlGhlv~---l~~l~~l-Q~~G~~~~~ligd~ta~igDpsgk~~~r----~~l~-~e~i~~n~~~i~~  106 (408)
T PRK05912         36 IYLGFDPTAPSLHLGHLVP---LLKLRRF-QDAGHKPIALIGGFTGMIGDPSGKSETR----KLLT-REQVAENAETIKE  106 (408)
T ss_pred             EEEeecCCCCCccHHhHHH---HHHHHHH-HHCCCcEEEEEcCceeEcCCCCCCchhh----ccCC-HHHHHHHHHHHHH
Confidence            4445568995 99999763   3344444 4468887777643      344433222    2223 3334456666777


Q ss_pred             HHHhcCCCc
Q psy7914         264 QLQGFGCKF  272 (365)
Q Consensus       264 ~l~~lgI~~  272 (365)
                      ++ +.|+.+
T Consensus       107 ql-~~~ld~  114 (408)
T PRK05912        107 QL-FKFLDF  114 (408)
T ss_pred             HH-HHhcCc
Confidence            77 444443

>TIGR00233 trpS tryptophanyl-tRNA synthetase

Probab=87.04  E-value=2.1  Score=42.33  Aligned_cols=87  Identities=16%  Similarity=0.203  Sum_probs=47.0

Q ss_pred             cCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCc
Q psy7914         193 MFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKF  272 (365)
Q Consensus       193 ~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~  272 (365)
                      ..--|||.|||||..+++..=    ++...|++|.+...=. |..-.     ..+.++.. .......+..++-++|+..
T Consensus         7 ~G~~PTG~~HlG~~l~~~~~~----~~~q~~~~~~i~IaD~-ha~t~-----~~~~~~~~-~~~~~~~~~~~~lA~GlDp   75 (328)
T TIGR00233         7 TGIQPSGKMHLGHYLGAIQTK----WLQQFGVELFICIADL-HAITV-----KDNTDPDA-LRKAREELAADILAVGLDP   75 (328)
T ss_pred             EeeCCCcHhHHHHHHHHHHHH----HHHhCCCCEEEEeecc-hhhcC-----CCCCCHHH-HHHHHHHHHHHHHHhCcCh
Confidence            344588999999988765543    3335788876654332 22110     01112333 3444555677788899987


Q ss_pred             cCCCcccccC-hhhHHHHH
Q psy7914         273 NWESELATCD-PKYYKWTQ  290 (365)
Q Consensus       273 D~~~~~~t~d-~~~~~~v~  290 (365)
                      +-..++..++ +.|.+.++
T Consensus        76 ~k~~if~qS~~~e~~el~~   94 (328)
T TIGR00233        76 KKTFIFLQSDYPEHYELAW   94 (328)
T ss_pred             hheEEEEcCCcHHHHHHHH
Confidence            7212222333 45554444

This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.

>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=86.97  E-value=2.2  Score=42.05  Aligned_cols=74  Identities=19%  Similarity=0.083  Sum_probs=44.2

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCC-cEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGK-NVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~-~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      +.|+++ --|||.|||||..+++..    +++...++ ++.+. =.|.|..-      ..+..+.+-.......+-.++-
T Consensus         6 ~~vlSG-~~PSG~lHLGny~ga~~~----~v~~q~~~~~~f~~-IaDlha~t------~~~~~~~~~l~~~~~e~~a~~L   73 (314)
T COG0180           6 FRVLSG-IQPSGKLHLGNYLGAIRN----WVLLQEEYYECFFF-IADLHAIT------VRQDPTEEDLRQATREVAADYL   73 (314)
T ss_pred             ceEEec-CCCCCCcchhHhHHHHHH----HHHHhcccCceEEE-EecHHHhh------cCCCChHHHHHHHHHHHHHHHH
Confidence            344443 358999999999887543    44445564 55443 34443321      1222333445666677777888


Q ss_pred             hcCCCcc
Q psy7914         267 GFGCKFN  273 (365)
Q Consensus       267 ~lgI~~D  273 (365)
                      ++||..+
T Consensus        74 A~GiDP~   80 (314)
T COG0180          74 AVGLDPE   80 (314)
T ss_pred             HhccCcc
Confidence            8999877

>PLN02486 aminoacyl-tRNA ligase

Probab=86.72  E-value=7.8  Score=39.28  Aligned_cols=75  Identities=16%  Similarity=0.070  Sum_probs=42.6

Q ss_pred             ceEEEecCCCCCCC-CchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGS-LHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL  265 (365)
Q Consensus       187 ~~~I~~~~PnpnG~-LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l  265 (365)
                      ++++ +..--|||+ |||||.-   ....+..+.+..|..+... -+|+     +..+. .+.+.++. .++.....+++
T Consensus        73 ~~~v-YtG~~PSg~~lHlGHlv---~~~~~~~lQ~~~~~~~~I~-iaD~-----e~~~~-~~~~~e~i-~~~~~en~~~i  140 (383)
T PLN02486         73 KFYL-YTGRGPSSEALHLGHLI---PFMFTKYLQDAFKVPLVIQ-LTDD-----EKFLW-KNLSVEES-QRLARENAKDI  140 (383)
T ss_pred             CeEE-EeCCCCCCccccHHHHH---HHHHHHHHHHhCCCeEEEE-ecCH-----HHHhh-cCCCHHHH-HHHHHHHHHHH
Confidence            4444 444568995 9999954   4444444444556555444 4454     22222 34555444 44555567777


Q ss_pred             HhcCCCcc
Q psy7914         266 QGFGCKFN  273 (365)
Q Consensus       266 ~~lgI~~D  273 (365)
                      .++|+..+
T Consensus       141 iA~G~dp~  148 (383)
T PLN02486        141 IACGFDVE  148 (383)
T ss_pred             HHhCCCCc
Confidence            77898765

>PTZ00427 isoleucine-tRNA ligase, putative; Provisional

Probab=86.00  E-value=1.2  Score=51.28  Aligned_cols=56  Identities=20%  Similarity=0.350  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeeeeEeCchhHHHHHhh
Q psy7914         289 TQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLANLVSLV  359 (365)
Q Consensus       289 v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~  359 (365)
                      -..+++.|.++|++.......      .         .=|.|++||.|++.+..++||++++++++++.+.
T Consensus       490 ~~~Ii~~Lk~~g~L~~~e~~~------H---------~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~~  545 (1205)
T PTZ00427        490 DNVIKKKLKNENRLLSNNTIV------H---------SYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKN  545 (1205)
T ss_pred             HHHHHHHHHhCCCeeeeeeee------c---------cCCEeCCCCCEEEEEecceeEEeCcHHHHHHHHc
Confidence            367788899999887553211      0         1377999999999999999999999999987763

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=85.71  E-value=0.71  Score=41.73  Aligned_cols=45  Identities=11%  Similarity=-0.008  Sum_probs=33.9

Q ss_pred             CCEEEeCcceeecCCCCcccccccc-ccCCCccCCCCccEEEEeee
Q psy7914         300 GLVYRKEATVNWDPIDNTVLADEQV-DEQGISWRSGARVEKRRLSQ  344 (365)
Q Consensus       300 G~Iy~~~~~v~yc~~~~t~Ls~~ev-e~~~~c~~~g~~~e~~~~~~  344 (365)
                      -+-++.+...|.||.|+.-++-.++ +.+..|+.||.+++......
T Consensus       108 ~l~~e~~~~~Y~Cp~C~~rytf~eA~~~~F~Cp~Cg~~L~~~dn~~  153 (178)
T PRK06266        108 QLEEEENNMFFFCPNCHIRFTFDEAMEYGFRCPQCGEMLEEYDNSE  153 (178)
T ss_pred             HhhhccCCCEEECCCCCcEEeHHHHhhcCCcCCCCCCCCeecccHH
Confidence            3556677788999999987776665 45789999999998754433

>PRK12556 tryptophanyl-tRNA synthetase; Provisional

Probab=85.57  E-value=3.2  Score=41.21  Aligned_cols=68  Identities=15%  Similarity=0.121  Sum_probs=38.4

Q ss_pred             CCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914         195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN  273 (365)
Q Consensus       195 PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D  273 (365)
                      --|||.|||||..+++-.  ..+++...|.++.+.. .|-|-+   .    ...++.++. ++......++-++|+..+
T Consensus        10 iqPTG~~HLGnylga~k~--~~~lq~~~~~~~~~~I-ADlHal---t----~~~~~~~l~-~~~~~~~~~~lA~GlDP~   77 (332)
T PRK12556         10 IKPTGYPHLGNYIGAIKP--ALQMAKNYEGKALYFI-ADYHAL---N----AVHDPEQFR-SYTREVAATWLSLGLDPE   77 (332)
T ss_pred             ECCCCcchHHHHHHHHHH--HHHHHHhcCCeEEEEE-echhhc---c----CCCCHHHHH-HHHHHHHHHHhheeeccc
Confidence            347899999998886543  2223333455454442 232222   0    112555543 444556778889999776

>PRK00927 tryptophanyl-tRNA synthetase; Reviewed

Probab=85.51  E-value=2  Score=42.53  Aligned_cols=66  Identities=20%  Similarity=0.229  Sum_probs=39.2

Q ss_pred             CCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914         195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN  273 (365)
Q Consensus       195 PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D  273 (365)
                      --|||.|||||..+++-.  +.++..  +++|.+..+ |-|-.       -...++.++ ..+...+..++.++|+..+
T Consensus         8 ~~PTG~lHLG~~~g~~~~--~~~lQ~--~~~~~~~Ia-D~ha~-------t~~~~~~~i-~~~~~~~~~~~lA~GlDp~   73 (333)
T PRK00927          8 IQPTGKLHLGNYLGAIKN--WVELQD--EYECFFCIA-DLHAL-------TVPQDPEEL-RENTRELAADYLACGIDPE   73 (333)
T ss_pred             eCCCccchHHhHHHHHHH--HHHHHh--cCCeEEEEe-cHHHH-------hCCCCHHHH-HHHHHHHHHHHHeEccChh
Confidence            348999999999887532  444444  366665543 21111       011244433 4445567778888999766

>PRK08560 tyrosyl-tRNA synthetase; Validated

Probab=85.34  E-value=3  Score=41.27  Aligned_cols=70  Identities=20%  Similarity=0.125  Sum_probs=40.2

Q ss_pred             ecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC
Q psy7914         192 SMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCK  271 (365)
Q Consensus       192 ~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~  271 (365)
                      ...--|||.|||||.. .+.  -++++.+ .|++|.+..+ |.|..-.      ...++. -+..+...+..++.++|+.
T Consensus        34 ~~G~~PTG~lHLG~~~-~~~--~~~~lq~-~g~~~~i~Ia-D~ha~~~------~~~~~~-~i~~~~~~~~~~~~A~G~d  101 (329)
T PRK08560         34 YIGFEPSGKIHLGHLL-TMN--KLADLQK-AGFKVTVLLA-DWHAYLN------DKGDLE-EIRKVAEYNKKVFEALGLD  101 (329)
T ss_pred             EEccCCCCcchhhhhH-HHH--HHHHHHH-CCCeEEEEEc-cchhhcC------CCCCHH-HHHHHHHHHHHHHHHcCCC
Confidence            3445678999999954 222  2555554 4887655543 3332210      012333 3345556688888889986


Q ss_pred             cc
Q psy7914         272 FN  273 (365)
Q Consensus       272 ~D  273 (365)
                      .+
T Consensus       102 p~  103 (329)
T PRK08560        102 PD  103 (329)
T ss_pred             hh
Confidence            55

>PRK13354 tyrosyl-tRNA synthetase; Provisional

Probab=84.74  E-value=3  Score=42.59  Aligned_cols=76  Identities=18%  Similarity=0.175  Sum_probs=42.3

Q ss_pred             EEecCCCCCCC-CchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCC--CCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         190 VLSMFPYPSGS-LHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDA--FGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       190 I~~~~PnpnG~-LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd--~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      ..+..--|||+ |||||+-.   --.+. ++...|+.+....|--.  -|.|--....+...+.++. .++...++.++.
T Consensus        35 ~iy~G~dPT~~sLHlGhlv~---l~~l~-~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i-~~n~~~i~~q~~  109 (410)
T PRK13354         35 TLYLGFDPTAPSLHIGHLVP---LMKLK-RFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQV-QHNAKTYTEQIF  109 (410)
T ss_pred             EEEEcccCCCCCcchhhHHH---HHHHH-HHHHcCCeEEEEEcccccccCCCCcccccccCCCHHHH-HHHHHHHHHHHH
Confidence            34555668995 99999444   23344 44557898887776444  3333322222233443333 455667777766


Q ss_pred             hcCCC
Q psy7914         267 GFGCK  271 (365)
Q Consensus       267 ~lgI~  271 (365)
                      + ++.
T Consensus       110 ~-~ld  113 (410)
T PRK13354        110 K-LFD  113 (410)
T ss_pred             H-hcC
Confidence            5 443

>PRK12283 tryptophanyl-tRNA synthetase; Reviewed

Probab=81.45  E-value=6.9  Score=39.81  Aligned_cols=65  Identities=22%  Similarity=0.222  Sum_probs=39.2

Q ss_pred             CCCCCCchHHHHHHHHhhHHHHHHH-HCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914         196 YPSGSLHMGHVRVYTISDTLARYYA-MNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN  273 (365)
Q Consensus       196 npnG~LHiGHar~~v~~DvlaR~lr-~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D  273 (365)
                      -|||.+||||..+++.     .|.. ..|+++.+ +=.|.|-.-      ....++.++. ++...+..++.++|+..+
T Consensus        10 qPSG~~HLGnylG~ik-----~wv~lq~~~~~~~-~IADlHAlt------~~~~d~~~ir-~~~~~~~a~~lA~GlDP~   75 (398)
T PRK12283         10 RPTGRLHLGHYHGVLK-----NWVKLQHEYECFF-FVADWHALT------THYETPEVIE-KNVWDMVIDWLAAGVDPA   75 (398)
T ss_pred             CCCCcchHHHHHHHHH-----HHHHHhcCCcEEE-EeecHHHHh------CCCCCHHHHH-HHHHHHHHHHHHcCCCcc
Confidence            4899999999988653     3333 34766543 333433221      0112454443 444567889999999776

>PTZ00126 tyrosyl-tRNA synthetase; Provisional

Probab=81.23  E-value=3.1  Score=42.17  Aligned_cols=74  Identities=14%  Similarity=0.012  Sum_probs=40.0

Q ss_pred             EecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7914         191 LSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC  270 (365)
Q Consensus       191 ~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI  270 (365)
                      ....--|||.|||||  +++..--+..+ ...|++|.+..+- -|..-.    ...|.++.++ ......+.+.+.++|+
T Consensus        69 v~~G~~PTG~lHLG~--g~i~~~~~~~l-q~~G~~v~~~IaD-~hA~~~----~~~g~~l~~i-~~~~~~~~~~~~A~Gl  139 (383)
T PTZ00126         69 CYDGFEPSGRMHIAQ--GILKAINVNKL-TKAGCVFVFWVAD-WFALLN----NKMGGDLEKI-RKVGEYFIEVWKAAGM  139 (383)
T ss_pred             EEEEECCCCcccccc--hHhHhHHHHHH-HhCCCeEEEEEcc-ceeecC----CCCCCCHHHH-HHHHHHHHHHHHHhCC
Confidence            344445899999999  33222233443 3458887666432 221100    0123344443 4455556777888888


Q ss_pred             Ccc
Q psy7914         271 KFN  273 (365)
Q Consensus       271 ~~D  273 (365)
                      ..+
T Consensus       140 Dp~  142 (383)
T PTZ00126        140 DMD  142 (383)
T ss_pred             Ccc
Confidence            765

>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=81.06  E-value=5.8  Score=40.45  Aligned_cols=104  Identities=20%  Similarity=0.229  Sum_probs=54.9

Q ss_pred             EEecCCCCCC-CCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCC--CCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         190 VLSMFPYPSG-SLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDA--FGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       190 I~~~~PnpnG-~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd--~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      ..+.-.-||| .|||||.-.   --.++|+ ...|++|....|-=+  -|.|--...... .-..+.+.++.+.|++++.
T Consensus        34 ~~Y~GfDPTa~slHlGhlv~---l~kL~~f-Q~aGh~~ivLigd~ta~IgDpsGk~e~r~-~l~~e~v~~n~~~i~~ql~  108 (401)
T COG0162          34 RVYIGFDPTAPSLHLGHLVP---LMKLRRF-QDAGHKPIVLIGDATAMIGDPSGKSEERK-LLTRETVLENAETIKKQLG  108 (401)
T ss_pred             eEEEeeCCCCCccchhhHHH---HHHHHHH-HHCCCeEEEEecccceecCCCCCCHHHHh-hccHHHHHHHHHHHHHHhc
Confidence            3445566899 799999754   3344444 668999888876432  134421111111 1123445566666666665


Q ss_pred             hc-----CCCccCCCcccccChhhHHHHHHH-----HHHHHHCCC
Q psy7914         267 GF-----GCKFNWESELATCDPKYYKWTQAL-----FLDLYHAGL  301 (365)
Q Consensus       267 ~l-----gI~~D~~~~~~t~d~~~~~~v~~~-----f~~L~~kG~  301 (365)
                      .+     -+.+   +.-...+.+|...+..+     +.+|.++.-
T Consensus       109 ~~ld~k~~~v~---ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~  150 (401)
T COG0162         109 KFLDNKAEFVN---NSDWLKKLNYLDFLRDVGKHFSVNRMLRRDD  150 (401)
T ss_pred             ccCCcceEEEe---chHHhCcCCHHHHHHHHHhHccHHHHHHhhh
Confidence            42     1212   12224445566665555     555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	365
4aq7_A	880	Ternary Complex Of E. Coli Leucyl-Trna Synthetase,		3e-54
1obh_A	878	Leucyl-Trna Synthetase From Thermus Thermophilus Co		2e-48
2v0c_A	878	Leucyl-Trna Synthetase From Thermus Thermophilus Co		2e-48
3ziu_A	637	Crystal Structure Of Mycoplasma Mobile Leucyl-trna		8e-39
1wz2_A	967	The Crystal Structure Of Leucyl-Trna Synthetase And		8e-16
1wkb_A	810	Crystal Structure Of Leucyl-Trna Synthetase From Th		1e-15
1qu2_A	917	Insights Into Editing From An Ile-Trna Synthetase S		4e-13
1gax_A	862	Crystal Structure Of Thermus Thermophilus Valyl-Trn		3e-10
2csx_A	497	Crystal Structure Of Aquifex Aeolicus Methionyl-Trn		1e-09
4dlp_A	536	Crystal Structure Of Methionyl-Trna Synthetase Metr		3e-09
3kfl_A	564	Leishmania Major Methionyl-Trna Synthetase In Compl		4e-08
1rqg_A	722	Methionyl-Trna Synthetase From Pyrococcus Abyssi Le		7e-08
2x1l_A	524	Crystal Structure Of Mycobacterium Smegmatis Methio		5e-07
2d54_A	502	Crystal Structure Of Methionyl Trna Synthetase Y225		2e-06
1a8h_A	500	Methionyl-Trna Synthetase From Thermus Thermophilus		3e-06
1woy_A	500	Crystal Structure Of Methionyl Trna Synthetase Y225		3e-06
3tun_A	542	Trypanosoma Brucei Methionyl-Trna Synthetase In Com		6e-06
4eg5_A	542	Trypanosoma Brucei Methionyl-Trna Synthetase In Com		8e-06
1p7p_A	551	Methionyl-trna Synthetase From Escherichia Coli Com		8e-06
1f4l_A	551	Crystal Structure Of The E.Coli Methionyl-Trna Synt		9e-06
1qqt_A	551	Methionyl-Trna Synthetase From Escherichia Coli Len		9e-06
4eg1_A	542	Trypanosoma Brucei Methionyl-Trna Synthetase In Com		1e-05
3h9c_A	547	Structure Of Methionyl-Trna Synthetase: Crystal For		1e-05
3h97_A	560	Structure Of A Mutant Methionyl-trna Synthetase Wit		1e-05
1jzq_A	821	Isoleucyl-Trna Synthetase Complexed With Isoleucyl-		7e-05

>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase, Trna(Leu) And Leucyl-Adenylate Analogue In The Aminoacylation Conformation Length = 880

Iteration: 1
 Score =  208 bits (530), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 119/170 (70%), Gaps = 1/170 (0%)
Query: 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAH 244
           ++ +Y LSM PYPSG LHMGHVR YTI D +ARY  M GKNV QP+GWDAFGLPAE AA 
Sbjct: 52  KEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAV 111
Query: 245 QHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 304
           ++   P  WT  NIA MK+QL+  G  ++W  ELATC P+YY+W Q  F +LY  GLVY+
Sbjct: 112 KNNTAPAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYK 171
Query: 305 KEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLAN 354
           K + VNW P D TVLA+EQV + G  WR   +VE++ + QWFI+ T  A+
Sbjct: 172 KTSAVNWCPNDQTVLANEQVID-GCCWRCDTKVERKEIPQWFIKITAYAD 220

>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Pre-Transfer Editing Substrate Analogue In Both Synthetic Active Site And Editing Site Length = 878

Iteration: 1
 Score =  189 bits (480), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 88/167 (52%), Positives = 111/167 (66%), Gaps = 2/167 (1%)
Query: 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGI 248
           YVL MFPYPSG LHMGH++ YT+ D LAR+  M G  V  PMGWDAFGLPAENAA + G+
Sbjct: 36  YVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGV 95
Query: 249 DPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEAT 308
            P++WT  NI   K  L+  G  ++W+ E+ TC+P+YY+W Q +FL ++  GL YR +  
Sbjct: 96  HPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGL 155
Query: 309 VNWDPIDNTVLADEQVDEQGISWR-SGARVEKRRLSQWFIRTTRLAN 354
           VNW P   TVLA+EQV E G  WR     VEKR L QW++R T  A 
Sbjct: 156 VNWCPKCQTVLANEQVVE-GRCWRHEDTPVEKRELEQWYLRITAYAE 201

>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Sulphamoyl Analogue Of Leucyl-Adenylate In The Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3- Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The Editing Site Length = 878

Iteration: 1
 Score =  189 bits (480), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 88/167 (52%), Positives = 111/167 (66%), Gaps = 2/167 (1%)
Query: 189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGI 248
           YVL MFPYPSG LHMGH++ YT+ D LAR+  M G  V  PMGWDAFGLPAENAA + G+
Sbjct: 36  YVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGV 95
Query: 249 DPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEAT 308
            P++WT  NI   K  L+  G  ++W+ E+ TC+P+YY+W Q +FL ++  GL YR +  
Sbjct: 96  HPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGL 155
Query: 309 VNWDPIDNTVLADEQVDEQGISWR-SGARVEKRRLSQWFIRTTRLAN 354
           VNW P   TVLA+EQV E G  WR     VEKR L QW++R T  A 
Sbjct: 156 VNWCPKCQTVLANEQVVE-GRCWRHEDTPVEKRELEQWYLRITAYAE 201

>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna Synthetase With Leu-ams In The Active Site Length = 637

Iteration: 1
 Score =  157 bits (397), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 82/195 (42%), Positives = 114/195 (58%), Gaps = 12/195 (6%)
Query: 183 RREDNFYVLSMFPYPSGS-LHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAEN 241
           + +D FY L MFPYPSGS LH+GH   YT +D ++RY  + G +V  P+GWDAFGLPAE 
Sbjct: 33  KSKDKFYALDMFPYPSGSGLHVGHPEGYTATDIISRYKRLKGFDVLHPIGWDAFGLPAEQ 92
Query: 242 AAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGL 301
            A   G  P+ +T+ NI   + QL+  G  F++E E+ T DP YY+WTQ +F  +Y  GL
Sbjct: 93  YALSSGKHPQPFTLKNIENFRRQLKSLGFSFDYEKEVNTTDPSYYRWTQWIFKQIYKKGL 152
Query: 302 VYRKEATVNWDPIDNTVLADEQVDE----QGISWRSGARVEKRRLSQWFIRTTRLA---- 353
              +E  VNW P   TVLA+E++ E    + +S R    V K+ + QW ++ T  A    
Sbjct: 153 AEIREVDVNWCPGLGTVLANEEIVENDKGEMVSERGSFPVYKKPMKQWVLKITNYADRLL 212
Query: 354 ---NLVSLVDSVSAL 365
              NL+   DS+  L
Sbjct: 213 EDLNLLDWPDSLKKL 227

>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And Trna(Leucine) Complex Length = 967

Iteration: 1
 Score = 81.3 bits (199), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 74/174 (42%), Gaps = 26/174 (14%)
Query: 179 LEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLP 238
           +  K +E  FY+   FPY SG LH+GH R YTI D +AR+  M G NV  PM W   G P
Sbjct: 27  IRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSP 86
Query: 239 AENAAHQ-HGIDPRE---------------WTVG---NIAT--MKSQLQGF---GCKFNW 274
               A +    DP+                WT     NI    MK+  + F   G   +W
Sbjct: 87  IVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDW 146
Query: 275 ESELATCD--PKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDE 326
             E  T    P + K+ +  F  L   G + +    V WDP+  T L D  + E
Sbjct: 147 SREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLME 200

>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The Archaeon Pyrococcus Horikoshii Reveals A Novel Editing Domain Orientation Length = 810

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 74/174 (42%), Gaps = 26/174 (14%)
Query: 179 LEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLP 238
           +  K +E  FY+   FPY SG LH+GH R YTI D +AR+  M G NV  PM W   G P
Sbjct: 27  IRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSP 86
Query: 239 AENAAHQ-HGIDPRE---------------WTVG---NIAT--MKSQLQGF---GCKFNW 274
               A +    DP+                WT     NI    MK+  + F   G   +W
Sbjct: 87  IVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDW 146
Query: 275 ESELATCD--PKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDE 326
             E  T    P + K+ +  F  L   G + +    V WDP+  T L D  + E
Sbjct: 147 SREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLME 200

>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase Structure With Trna(Ile) And Mupirocin Length = 917

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 12/159 (7%)
Query: 179 LEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLP 238
           LE  +  + F +    PY +G+LHMGH     + D + RY  M G       GWD  GLP
Sbjct: 41  LEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLP 100
Query: 239 AENAAHQHGIDP------------REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYY 286
            E A  + G+D             +E+ +  I   K   +  G + ++     T  P+Y 
Sbjct: 101 IEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYE 160
Query: 287 KWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD 325
                +F ++   GL+Y+ +  V W P   + LA+ +++
Sbjct: 161 AAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIE 199

>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna Synthetase Complexed With Trna(Val) And Valyl-Adenylate Analogue Length = 862

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 63/156 (40%), Gaps = 16/156 (10%)
Query: 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAE------- 240
           F +    P  +GSLHMGH    ++ D L RY  M G       G D  G+  +       
Sbjct: 36  FVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLL 95
Query: 241 ----NAAHQHGIDPR-----EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQA 291
                  H  G +       +W   +  T+  QL+  G   +W  E  T D K  +  + 
Sbjct: 96  LKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRY 155
Query: 292 LFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQ 327
            F   YH GL YR    VNW P   T L+D +V+ +
Sbjct: 156 AFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETE 191

>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna Synthetase Complexed With Trna(Met) Length = 497

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH 246
            FYV +   Y +   H+GH      +DT+ARYY +   +VF   G D  GL  +  A + 
Sbjct: 6   KFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEEL 65
Query: 247 GIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE 306
           GI P+E    N    K +L  F  K  +   + T DP + K+ Q +F + Y  G +Y  E
Sbjct: 66  GISPKELVDRNAERFK-KLWEF-LKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGE 123

>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From Brucella Melitensis Bound To Selenomethionine Length = 536

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 8/134 (5%)
Query: 177 GTLE------GKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPM 230
           GTLE      G    + +Y+ +   YP+G  H+GH      +D +AR+  +NG +V+   
Sbjct: 10  GTLEAQTQGPGSMSREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLT 69
Query: 231 GWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQ 290
           G D  G+    +A + GI PR+    N +  +   +      + +  + T + ++YK +Q
Sbjct: 70  GTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVLNS--SNDDYIRTSEERHYKASQ 127
Query: 291 ALFLDLYHAGLVYR 304
           A++  +   G +Y+
Sbjct: 128 AIWQAMVANGDIYK 141

>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With Methionyladenylate And Pyrophosphate Length = 564

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 177 GTLEGK-------RREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQP 229
           GTLE +       +++  F+  +   Y + S H+GHV    I D L RY+ + G+ VF  
Sbjct: 10  GTLEAQTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVM 69
Query: 230 MGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWT 289
            G D  G     AA + G+ P ++T    +  K   Q      N+   + T +P + K  
Sbjct: 70  TGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEMNYDMNY--FIRTTNPTHEKLV 127
Query: 290 QALFLDLYHAGLVY 303
           Q ++  L   G +Y
Sbjct: 128 QDIWKKLAAKGDIY 141

>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi Length = 722

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 59/140 (42%), Gaps = 7/140 (5%)
Query: 188 FYVLSMFPYPSGSLHMGHVR-VYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH 246
           + V S  PY +G +H GH+   Y  +D   RY  + G++V    G D  G P    A + 
Sbjct: 4   YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE 63
Query: 247 GIDPREWTVGNIATMKSQLQGFGCKFNW--ESELATCDPKYYKWTQALFLDLYHAGLVYR 304
           G  PRE        +K   Q     F++   +EL    P +YK +Q  FL  Y  G + +
Sbjct: 64  GRSPREIVDEFHEQIKITFQRAKISFDFFGRTEL----PIHYKLSQEFFLKAYENGHLVK 119
Query: 305 KEATVNWDPIDNTVLADEQV 324
           K     +   D   L D  V
Sbjct: 120 KVTKQAYCEHDKMFLPDRFV 139

>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Methionyl-Trna Synthetase In Complex With Methionine And Adenosine Length = 524

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 12/177 (6%)
Query: 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHG 247
           FY+ +   YP+G  H+GH   Y  +D +AR+  ++G +V    G D  G      A + G
Sbjct: 14  FYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEG 73
Query: 248 IDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEA 307
           I   E    N    +   +     F+    + T D  +Y+ ++A++  +  AG +Y  +A
Sbjct: 74  IPAAELARRNSDVFQRLQEKLNISFD--RFIRTSDADHYEASKAIWKRMADAGDIY-LDA 130
Query: 308 TVNWDPIDNTVL-----ADEQVDEQGISWRSGARVEKRRLSQWFIR----TTRLANL 355
              W  I +          EQ D   I+  +GA V       +F R    T RL  L
Sbjct: 131 YKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLAL 187

>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a Mutant From Thermus Thermophilus Length = 502

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 3/167 (1%)
Query: 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAH 244
           E  FYV +   Y +   H+GH     ++D LAR++ ++G   F   G D  G     AA 
Sbjct: 2   EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQ 61
Query: 245 QHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 304
             G DP+ +        K      G  ++    + T + ++ K  Q +   +Y AG +Y 
Sbjct: 62  AAGEDPKAFVDRVSGRFKRAWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYY 119
Query: 305 KEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTR 351
            E    +         ++++ E G+    G  VE+R+   +F R  +
Sbjct: 120 GEYEGLYCVSCERFYTEKELVE-GLCPIHGRPVERRKEGNYFFRMEK 165

>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus Length = 500

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 3/167 (1%)
Query: 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAH 244
           E  FYV +   Y +   H+GH     ++D LAR++ ++G   F   G D  G     AA 
Sbjct: 2   EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQ 61
Query: 245 QHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 304
             G DP+ +        K      G  ++    + T + ++ K  Q +   +Y AG +Y 
Sbjct: 62  AAGEDPKAFVDRVSGRFKRAWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYY 119
Query: 305 KEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTR 351
            E    +         ++++ E G+    G  VE+R+   +F R  +
Sbjct: 120 GEYEGLYCVSCERFYTEKELVE-GLCPIHGRPVERRKEGNYFFRMEK 165

>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f Mutant From Thermus Thermophilus Length = 500

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 3/167 (1%)
Query: 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAH 244
           E  FYV +   Y +   H+GH     ++D LAR++ ++G   F   G D  G     AA 
Sbjct: 2   EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQ 61
Query: 245 QHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 304
             G DP+ +        K      G  ++    + T + ++ K  Q +   +Y AG +Y 
Sbjct: 62  AAGEDPKAFVDRVSGRFKRAWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYY 119
Query: 305 KEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTR 351
            E    +         ++++ E G+    G  VE+R+   +F R  +
Sbjct: 120 GEYEGLYCVSCERFYTEKELVE-GLCPIHGRPVERRKEGNYFFRMEK 165

>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1356 Length = 542

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 38/82 (46%)
Query: 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAH 244
           E  F+V S   Y + + H+GHV    I+D + RY+ + G+ VF   G D  G     AA 
Sbjct: 8   EKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAK 67
Query: 245 QHGIDPREWTVGNIATMKSQLQ 266
           Q  + P ++T       K   +
Sbjct: 68  QKQVSPYDFTTAVAGEFKKXFE 89

>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1312 Length = 542

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 38/82 (46%)
Query: 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAH 244
           E  F+V S   Y + + H+GHV    I+D + RY+ + G+ VF   G D  G     AA 
Sbjct: 8   EKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAK 67
Query: 245 QHGIDPREWTVGNIATMKSQLQ 266
           Q  + P ++T       K   +
Sbjct: 68  QKQVSPYDFTTAVAGEFKKCFE 89

>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed With Methionine Phosphonate Length = 551

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 2/135 (1%)
Query: 190 VLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGID 249
           V    PY +GS+H+GH+  +  +D   RY  M G  V      DA G P    A Q GI 
Sbjct: 9   VTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGIT 68
Query: 250 PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATV 309
           P E  +G + + + Q    G   ++++  +T   +  + ++ ++  L   G +  +  + 
Sbjct: 69  P-EQMIGEM-SQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQ 126
Query: 310 NWDPIDNTVLADEQV 324
            +DP     L D  V
Sbjct: 127 LYDPEKGMFLPDRFV 141

>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase Complexed With Methionine Length = 551

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 2/135 (1%)
Query: 190 VLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGID 249
           V    PY +GS+H+GH+  +  +D   RY  M G  V      DA G P    A Q GI 
Sbjct: 10  VTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGIT 69
Query: 250 PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATV 309
           P E  +G + + + Q    G   ++++  +T   +  + ++ ++  L   G +  +  + 
Sbjct: 70  P-EQMIGEM-SQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQ 127
Query: 310 NWDPIDNTVLADEQV 324
            +DP     L D  V
Sbjct: 128 LYDPEKGMFLPDRFV 142

>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Length = 551

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 2/135 (1%)
Query: 190 VLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGID 249
           V    PY +GS+H+GH+  +  +D   RY  M G  V      DA G P    A Q GI 
Sbjct: 9   VTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGIT 68
Query: 250 PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATV 309
           P E  +G + + + Q    G   ++++  +T   +  + ++ ++  L   G +  +  + 
Sbjct: 69  P-EQMIGEM-SQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQ 126
Query: 310 NWDPIDNTVLADEQV 324
            +DP     L D  V
Sbjct: 127 LYDPEKGMFLPDRFV 141

>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Substrate Methionine Length = 542

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 38/82 (46%)
Query: 185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAH 244
           E  F+V S   Y + + H+GHV    I+D + RY+ + G+ VF   G D  G     AA 
Sbjct: 8   EKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAK 67
Query: 245 QHGIDPREWTVGNIATMKSQLQ 266
           Q  + P ++T       K   +
Sbjct: 68  QKQVSPYDFTTAVAGEFKKCFE 89

>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2 Length = 547

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 2/135 (1%)
Query: 190 VLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGID 249
           V    PY +GS+H+GH+  +  +D   RY  M G  V      DA G P    A Q GI 
Sbjct: 9   VTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGIT 68
Query: 250 PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATV 309
           P E  +G + + + Q    G   ++++  +T   +  + ++ ++  L   G +  +  + 
Sbjct: 69  P-EQMIGEM-SQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQ 126
Query: 310 NWDPIDNTVLADEQV 324
            +DP     L D  V
Sbjct: 127 LYDPEKGMFLPDRFV 141

>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With Modified Specificity Length = 560

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 2/130 (1%)
Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWT 254
           PY +GS+H+GH+  +  +D   RY  M G  V      DA G P    A Q GI P E  
Sbjct: 27  PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITP-EQM 85
Query: 255 VGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPI 314
           +G + + + Q    G   ++++  +T   +  + ++ ++  L   G +  +  +  +DP 
Sbjct: 86  IGEM-SQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPE 144
Query: 315 DNTVLADEQV 324
               L D  V
Sbjct: 145 KGMFLPDRFV 154

>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl- Adenylate Analogue Length = 821

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 17/164 (10%)
Query: 178 TLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGL 237
           ++E ++    + V    P  +G  H+GH +  +  D   RY  M G    +  GWD  GL
Sbjct: 30  SVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGL 89
Query: 238 PAENAAHQ------------HGIDP-REWTVGNIATMKSQLQGFGCKFNW----ESELAT 280
           P E    +            +GI+   +    ++ T + + + F  +  +    E   AT
Sbjct: 90  PVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYAT 149
Query: 281 CDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQV 324
            +P Y +       +L+  GL+YR    V + P   T L+  +V
Sbjct: 150 LEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEV 193

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	365
4arc_A	880	Leucine--tRNA ligase; ligase-RNA complex, nucleoti	1e-110
2v0c_A	878	Aminoacyl-tRNA synthetase; ligase, nucleotide-bind	1e-106
1wkb_A	810	Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e	1e-61
1wz2_A	967	Leucyl-tRNA synthetase; ligase, riken structural g	2e-58
1rqg_A	722	Methionyl-tRNA synthetase; translation, dimerizati	7e-19
3tun_A	542	Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta	4e-17
3h99_A	560	Methionyl-tRNA synthetase; rossmann fold, aminoacy	9e-17
1gax_A	862	Valrs, valyl-tRNA synthetase; protein-RNA complex,	4e-16
2csx_A	497	Methionyl-tRNA synthetase; ligase, riken structura	1e-14
2d5b_A	500	Methionyl-tRNA synthetase; rossmann fold, class 1A	5e-14
4dlp_A	536	Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA	6e-14
2x1l_A	524	Methionyl-tRNA synthetase; nucleotide-binding, pro	1e-13
3kfl_A	564	Methionyl-tRNA synthetase; parasite, aminoacyl-tRN	6e-13
1ile_A	821	Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s	2e-12
1ffy_A	917	Isoleucyl-tRNA synthetase; protein-RNA complex, me	3e-09

>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880

 Score =  342 bits (879), Expect = e-110
 Identities = 94/163 (57%), Positives = 114/163 (69%), Gaps = 1/163 (0%)

Query: 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHG 247
           +Y LSM PYPSG LHMGHVR YTI D +ARY  M GKNV QP+GWDAFGLPAE AA ++ 
Sbjct: 55  YYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNN 114

Query: 248 IDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEA 307
             P  WT  NIA MK+QL+  G  ++W  ELATC P+YY+W Q  F +LY  GLVY+K +
Sbjct: 115 TAPAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTS 174

Query: 308 TVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTT 350
            VNW P D TVLA+EQV   G  WR   +VE++ + QWFI+ T
Sbjct: 175 AVNWCPNDQTVLANEQV-IDGCCWRCDTKVERKEIPQWFIKIT 216

>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878

 Score =  330 bits (848), Expect = e-106
 Identities = 86/174 (49%), Positives = 111/174 (63%), Gaps = 2/174 (1%)

Query: 178 TLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGL 237
             +        YVL MFPYPSG LHMGH++ YT+ D LAR+  M G  V  PMGWDAFGL
Sbjct: 25  AKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGL 84

Query: 238 PAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLY 297
           PAENAA + G+ P++WT  NI   K  L+  G  ++W+ E+ TC+P+YY+W Q +FL ++
Sbjct: 85  PAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMW 144

Query: 298 HAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWR-SGARVEKRRLSQWFIRTT 350
             GL YR +  VNW P   TVLA+EQV  +G  WR     VEKR L QW++R T
Sbjct: 145 EKGLAYRAKGLVNWCPKCQTVLANEQV-VEGRCWRHEDTPVEKRELEQWYLRIT 197

>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810

 Score =  210 bits (536), Expect = 1e-61
 Identities = 50/198 (25%), Positives = 66/198 (33%), Gaps = 33/198 (16%)

Query: 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ-- 245
           FY+   FPY SG LH+GH R YTI D +AR+  M G NV  PM W   G P    A +  
Sbjct: 36  FYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIK 95

Query: 246 ----------------------HGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCD- 282
                                    DP       +   K      G   +W  E  T   
Sbjct: 96  NRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSL 155

Query: 283 -PKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRR 341
            P + K+ +  F  L   G + +    V WDP+  T L D  +         G  V    
Sbjct: 156 FPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDL-------MEGEDVPILD 208

Query: 342 LSQWFIRTTRLANLVSLV 359
                        ++ L 
Sbjct: 209 YIIIKFELRENGEVIYLP 226

>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967

 Score =  202 bits (515), Expect = 2e-58
 Identities = 50/198 (25%), Positives = 66/198 (33%), Gaps = 33/198 (16%)

Query: 188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ-- 245
           FY+   FPY SG LH+GH R YTI D +AR+  M G NV  PM W   G P    A +  
Sbjct: 36  FYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIK 95

Query: 246 ----------------------HGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCD- 282
                                    DP       +   K      G   +W  E  T   
Sbjct: 96  NRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSL 155

Query: 283 -PKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRR 341
            P + K+ +  F  L   G + +    V WDP+  T L D  +         G  V    
Sbjct: 156 FPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDL-------MEGEDVPILD 208

Query: 342 LSQWFIRTTRLANLVSLV 359
                        ++ L 
Sbjct: 209 YIIIKFELRENGEVIYLP 226

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722

 Score = 87.1 bits (216), Expect = 7e-19
 Identities = 39/140 (27%), Positives = 55/140 (39%), Gaps = 5/140 (3%)

Query: 187 NFYVLSMFPYPSGSLHMGHVRVYTIS-DTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ 245
            + V S  PY +G +H GH+    +  D   RY  + G++V    G D  G P    A +
Sbjct: 3   RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK 62

Query: 246 HGIDPREWTVGNIATMKSQLQGFGCKF-NWESELATCDPKYYKWTQALFLDLYHAGLVYR 304
            G  PRE        +K   Q     F  +     T  P +YK +Q  FL  Y  G + +
Sbjct: 63  EGRSPREIVDEFHEQIKITFQRAKISFDFFGR---TELPIHYKLSQEFFLKAYENGHLVK 119

Query: 305 KEATVNWDPIDNTVLADEQV 324
           K     +   D   L D  V
Sbjct: 120 KVTKQAYCEHDKMFLPDRFV 139

>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542

 Score = 81.6 bits (201), Expect = 4e-17
 Identities = 38/180 (21%), Positives = 68/180 (37%), Gaps = 14/180 (7%)

Query: 185 EDNFYVLSMFPYPSGSLHMGHVRVYT--ISDTLARYYAMNGKNVFQPMGWDAFGLPAENA 242
           E  F+V S   Y + + H+GH  VY+  I+D + RY+ + G+ VF   G D  G     A
Sbjct: 8   EKVFFVTSPIYYVNAAPHIGH--VYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEA 65

Query: 243 AHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLV 302
           A Q  + P ++T       K   +      +    + T + ++    + L+  L   G +
Sbjct: 66  AKQKQVSPYDFTTAVAGEFKKXFEQMDYSID--YFIRTTNEQHKAVVKELWTKLEQKGDI 123

Query: 303 YRKEATVNWDPIDNTVLADEQVDE--------QGISWRSGARVEKRRLSQWFIRTTRLAN 354
           Y       +   D + L  + + +          +S  SG  V       +  R +    
Sbjct: 124 YLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAFRE 183

>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560

 Score = 80.7 bits (200), Expect = 9e-17
 Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 4/136 (2%)

Query: 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH 246
              V    PY +GS+H+GH+  +  +D   RY  M G  V      DA G P    A Q 
Sbjct: 19  KILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 78

Query: 247 GIDPREWTVGNIATMKSQLQGFGCKF-NWESELATCDPKYYKWTQALFLDLYHAGLVYRK 305
           GI P +         ++   GF   + N+ S   T   +  + ++ ++  L   G +  +
Sbjct: 79  GITPEQMIGEMSQEHQTDFAGFNISYDNYHS---THSEENRQLSELIYSRLKENGFIKNR 135

Query: 306 EATVNWDPIDNTVLAD 321
             +  +DP     L D
Sbjct: 136 TISQLYDPEKGMFLPD 151

>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862

 Score = 79.1 bits (196), Expect = 4e-16
 Identities = 46/151 (30%), Positives = 60/151 (39%), Gaps = 23/151 (15%)

Query: 199 GSLHMGHVRVYTISDTLARYYAMNGKNV-FQPMGWDAFGLPA-----ENAAHQHGIDPR- 251
           GSLHMGH    ++ D L RY  M G    + P G D  G+ A     E    + G     
Sbjct: 47  GSLHMGHALDNSLQDALIRYKRMRGFEAVWLP-GTDHAGI-ATQVVVERLLLKEGKTRHD 104

Query: 252 -----------EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAG 300
                      +W   +  T+  QL+  G   +W  E  T D K  +  +  F   YH G
Sbjct: 105 LGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEG 164

Query: 301 LVYRKEATVNWDPIDNTVLADEQV---DEQG 328
           L YR    VNW P   T L+D +V      G
Sbjct: 165 LAYRAPRLVNWCPRCETTLSDLEVETEPTPG 195

>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 15/170 (8%)

Query: 186 DNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ 245
             FYV +   Y +   H+GH      +DT+ARYY +   +VF   G D  GL  +  A +
Sbjct: 5   KKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEE 64

Query: 246 HGIDPREWTVGNIATMKSQLQGFGC---KFNWESELATCDPKYYKWTQALFLDLYHAGLV 302
            GI P+E    N    K   +       KF     + T DP + K+ Q +F + Y  G +
Sbjct: 65  LGISPKELVDRNAERFKKLWEFLKIEYTKF-----IRTTDPYHVKFVQKVFEECYKRGDI 119

Query: 303 YRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKR-------RLSQW 345
           Y  E    +        ++ ++ E         + E         RLS++
Sbjct: 120 YLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKY 169

>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500

 Score = 71.9 bits (177), Expect = 5e-14
 Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 12/127 (9%)

Query: 185 EDNFYVLSMFPYPSGSLHMGHVRVYT--ISDTLARYYAMNGKNVFQPMGWDAFGLPAENA 242
           E  FYV +   Y +   H+GH   YT  ++D LAR++ ++G   F   G D  G     A
Sbjct: 2   EKVFYVTTPIYYVNAEPHLGH--AYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRA 59

Query: 243 AHQHGIDPREWTVGNIATMKSQLQGFGC---KFNWESELATCDPKYYKWTQALFLDLYHA 299
           A   G DP+ +        K      G     F     + T + ++ K  Q +   +Y A
Sbjct: 60  AQAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDF-----IRTTEERHKKVVQLVLKKVYEA 114

Query: 300 GLVYRKE 306
           G +Y  E
Sbjct: 115 GDIYYGE 121

>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536

 Score = 71.9 bits (177), Expect = 6e-14
 Identities = 30/127 (23%), Positives = 60/127 (47%), Gaps = 12/127 (9%)

Query: 185 EDNFYVLSMFPYPSGSLHMGHVRVYT--ISDTLARYYAMNGKNVFQPMGWDAFGLPAENA 242
            + +Y+ +   YP+G  H+GH   Y    +D +AR+  +NG +V+   G D  G+    +
Sbjct: 24  REKYYITTAIAYPNGKPHIGH--AYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQS 81

Query: 243 AHQHGIDPREWTVGNIATMKSQLQGFGC---KFNWESELATCDPKYYKWTQALFLDLYHA 299
           A + GI PR+    N +  +   +        +     + T + ++YK +QA++  +   
Sbjct: 82  ARKEGITPRDLADRNTSAFRRMAEVLNSSNDDY-----IRTSEERHYKASQAIWQAMVAN 136

Query: 300 GLVYRKE 306
           G +Y+  
Sbjct: 137 GDIYKGG 143

>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524

 Score = 71.1 bits (175), Expect = 1e-13
 Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 12/134 (8%)

Query: 178 TLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYT--ISDTLARYYAMNGKNVFQPMGWDAF 235
                   + FY+ +   YP+G  H+GH   Y    +D +AR+  ++G +V    G D  
Sbjct: 4   HHHHHGGSEPFYITTAIAYPNGVPHIGH--AYEYIATDAIARFKRLDGYDVRYLTGTDVH 61

Query: 236 GLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC---KFNWESELATCDPKYYKWTQAL 292
           G      A + GI   E    N    +   +       +F     + T D  +Y+ ++A+
Sbjct: 62  GQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNISFDRF-----IRTSDADHYEASKAI 116

Query: 293 FLDLYHAGLVYRKE 306
           +  +  AG +Y   
Sbjct: 117 WKRMADAGDIYLDA 130

>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564

 Score = 68.9 bits (169), Expect = 6e-13
 Identities = 43/183 (23%), Positives = 70/183 (38%), Gaps = 27/183 (14%)

Query: 183 RREDNFYVLSMFPYPSGSLHMGHVRVYT--ISDTLARYYAMNGKNVFQPMGWDAFGLPAE 240
           +++  F+  +   Y + S H+GH  VY+  I D L RY+ + G+ VF   G D  G    
Sbjct: 23  KKQKVFFATTPIYYVNASPHIGH--VYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVA 80

Query: 241 NAAHQHGIDPREWTVGNIATMKSQLQGFGC---KFNWESELATCDPKYYKWTQALFLDLY 297
            AA + G+ P ++T    +  K   Q        F     + T +P + K  Q ++  L 
Sbjct: 81  EAAAKQGVSPMDFTTSVSSEFKQCFQEMNYDMNYF-----IRTTNPTHEKLVQDIWKKLA 135

Query: 298 HAGLVYRKEAT----VN----WDPIDNTVLADEQVDEQGISWRSGARVEKR-------RL 342
             G +Y  +      V+        +     D       +S  SG  V          RL
Sbjct: 136 AKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRL 195

Query: 343 SQW 345
           S +
Sbjct: 196 SAF 198

>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821

 Score = 67.6 bits (166), Expect = 2e-12
 Identities = 36/147 (24%), Positives = 54/147 (36%), Gaps = 23/147 (15%)

Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAA----------- 243
           P  +G  H+GH +  +  D   RY  M G    +  GWD  GLP E              
Sbjct: 47  PTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKRE 106

Query: 244 -HQHGIDP-----REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYK---WTQALFL 294
              +GI+      RE         ++  +      + E   AT +P Y +   W      
Sbjct: 107 IEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWW---SLK 163

Query: 295 DLYHAGLVYRKEATVNWDPIDNTVLAD 321
           +L+  GL+YR    V + P   T L+ 
Sbjct: 164 NLFDRGLLYRDHKVVPYCPRCGTPLSS 190

>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Length = 917

 Score = 57.6 bits (140), Expect = 3e-09
 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 14/140 (10%)

Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNV-FQPMGWDAFGLPAENAAHQHGIDP--- 250
           PY +G+LHMGH     + D + RY  M G    + P GWD  GLP E A  + G+D    
Sbjct: 57  PYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVP-GWDTHGLPIEQALTKKGVDRKKM 115

Query: 251 ---------REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGL 301
                    +E+ +  I   K   +  G + ++     T  P+Y      +F ++   GL
Sbjct: 116 STAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGL 175

Query: 302 VYRKEATVNWDPIDNTVLAD 321
           +Y+ +  V W P   + LA+
Sbjct: 176 IYKGKKPVYWSPSSESSLAE 195

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	365
4arc_A	880	Leucine--tRNA ligase; ligase-RNA complex, nucleoti	100.0
3u1f_A	542	Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta	100.0
2v0c_A	878	Aminoacyl-tRNA synthetase; ligase, nucleotide-bind	100.0
1rqg_A	722	Methionyl-tRNA synthetase; translation, dimerizati	100.0
3h99_A	560	Methionyl-tRNA synthetase; rossmann fold, aminoacy	100.0
4dlp_A	536	Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA	100.0
2d5b_A	500	Methionyl-tRNA synthetase; rossmann fold, class 1A	100.0
2x1l_A	524	Methionyl-tRNA synthetase; nucleotide-binding, pro	100.0
3kfl_A	564	Methionyl-tRNA synthetase; parasite, aminoacyl-tRN	100.0
2csx_A	497	Methionyl-tRNA synthetase; ligase, riken structura	100.0
1ffy_A	917	Isoleucyl-tRNA synthetase; protein-RNA complex, me	100.0
1gax_A	862	Valrs, valyl-tRNA synthetase; protein-RNA complex,	100.0
1ile_A	821	Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s	100.0
1wkb_A	810	Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e	99.97
1wz2_A	967	Leucyl-tRNA synthetase; ligase, riken structural g	99.97
2zue_A	629	Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase	99.93
1f7u_A	607	Arginyl-tRNA synthetase; RNA-protein complex, amin	99.92
1iq0_A	592	Arginyl-tRNA synthetase; riken structural genomics	99.91
3tqo_A	462	Cysteinyl-tRNA synthetase; protein synthesis, liga	99.9
3c8z_A	414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	99.9
1li5_A	461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	99.89
3sp1_A	501	Cysteinyl-tRNA synthetase; structural genomics, se	99.88
3fnr_A	464	Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX	99.85
3aii_A	553	Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta	99.75
1irx_A	523	Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin	99.71
4arc_A	880	Leucine--tRNA ligase; ligase-RNA complex, nucleoti	99.53
2o5r_A	481	Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g	99.31
2v0c_A	878	Aminoacyl-tRNA synthetase; ligase, nucleotide-bind	99.3
3al0_C	592	Glutamyl-tRNA(Gln) amidotransferase subunit C, GL	99.27
1qtq_A	553	GLNRS, protein (glutaminyl-tRNA synthetase); gluta	99.25
1nzj_A	298	Hypothetical protein YADB; Zn cluster, glutamyl T-	99.24
4g6z_A	490	Glutamate-tRNA ligase; aminoacyl-tRNA synthetase,	99.2
2hz7_A	851	Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c	99.18
2cfo_A	492	Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s	99.13
3afh_A	488	Glutamyl-tRNA synthetase 2; protein-substrate comp	99.13
4gri_A	512	Glutamate--tRNA ligase; structural genomics, seatt	99.11
1j09_A	468	Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r	99.04
2ja2_A	498	Glutamyl-tRNA synthetase; non-discriminating gluta	99.01
3o0a_A	219	Leucyl-tRNA synthetase subunit alpha; CP1 hydrolyt	98.11
1wkb_A	810	Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e	97.55
2ajg_A	196	Leucyl-tRNA synthetase; editing domain, ligase; 2.	97.3
1wny_A	186	Isoleucyl-tRNA synthetase; ligase, structural geno	97.07
1wka_A	147	Valyl-tRNA synthetase; editing, CP1, fidelity, the	95.88
3gdz_A	109	Arginyl-tRNA synthetase; klebsiella pneumoniae sub	95.86
2dlc_X	394	Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas	95.51
1n3l_A	372	Tyrosyl-tRNA synthetase; rossmann fold AS catalyti	94.59
3tzl_A	322	Tryptophanyl-tRNA synthetase; structural genomics,	94.59
2cyb_A	323	Tyrosyl-tRNA synthetase; rossmann-fold, structural	94.45
2wfd_A	252	Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRN	93.66
2wfg_A	261	Cytosolic leucyl-tRNA synthetase; ligase, editing	93.35
1i6k_A	328	TRPRS, tryptophanyl-tRNA synthetase; class I tRNA	93.17
2el7_A	337	Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth	92.69
2g36_A	340	Tryptophanyl-tRNA synthetase; TM0492, structural g	92.59
3a04_A	372	Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR	92.02
3jxe_A	392	Tryptophanyl-tRNA synthetase; adenosine triphospha	91.75
2zp1_A	314	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	91.58
2cya_A	364	Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st	91.34
3sz3_A	341	Tryptophanyl-tRNA synthetase; structural genomics,	90.52
3prh_A	388	Tryptophanyl-tRNA synthetase; TRPRS, protein biosy	89.45
3n9i_A	346	Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga	88.12
1yi8_B	351	Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.	87.82
3vgj_A	373	Tyrosyl-tRNA synthetase, putative; tyrrs, ligase;	87.58
3hzr_A	386	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str	87.4
2yy5_A	348	Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt	87.14
1wz2_A	967	Leucyl-tRNA synthetase; ligase, riken structural g	86.51
2cyc_A	375	Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy	86.36
3hv0_A	393	Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin	86.16
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	85.34
1jil_A	420	Tyrrs, tyrosyl-tRNA synthetase; truncation, based	84.72
2ip1_A	432	Tryptophanyl-tRNA synthetase; rossmann fold, struc	82.7
2j5b_A	348	Tyrosyl-tRNA synthetase; ligase, protein biosynthe	82.47
1y42_X	392	Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR	82.3
3foc_A	451	Tryptophanyl-tRNA synthetase; structural genomics,	82.28
1r6t_A	477	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	80.13

>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*

Probab=100.00  E-value=1.7e-41  Score=366.58  Aligned_cols=176  Identities=54%  Similarity=1.012  Sum_probs=142.2

Q ss_pred             CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy7914         184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKS  263 (365)
Q Consensus       184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~  263 (365)
                      ++++++|+++||||||+|||||+|+++++|+++||+||+||+|++++|+|+||+||+..|.+.|++|.+++.++.+.|++
T Consensus        51 ~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~  130 (880)
T 4arc_A           51 SKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKN  130 (880)
T ss_dssp             TSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEee
Q psy7914         264 QLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLS  343 (365)
Q Consensus       264 ~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~  343 (365)
                      +|++||+++||+++++|+++.|.+.++++|.+|+++|+||++.+.+||||.|+|+|++.||. +|+|++||.++|+++++
T Consensus       131 ~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~-~g~~~~~g~~ve~~~~~  209 (880)
T 4arc_A          131 QLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVI-DGCCWRCDTKVERKEIP  209 (880)
T ss_dssp             HHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC-------------------------------CEE
T ss_pred             HHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhh-cCcCcCCCCccEEEEcc
Confidence            99999999999999999999999999999999999999999999999999999999999994 89999999999999999


Q ss_pred             eeeEeCchhHHHHHhhh
Q psy7914         344 QWFIRTTRLANLVSLVD  360 (365)
Q Consensus       344 ~~ff~Ls~~~~~L~~~~  360 (365)
                      +|||+|++|+++|.++.
T Consensus       210 ~~f~~i~~y~~~Ll~~l  226 (880)
T 4arc_A          210 QWFIKITAYADELLNDL  226 (880)
T ss_dssp             EEEECGGGGHHHHHHHG
T ss_pred             ceEEeechhHHHHHHHH
Confidence            99999999999998775

>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*

Probab=100.00  E-value=7e-41  Score=346.05  Aligned_cols=175  Identities=21%  Similarity=0.306  Sum_probs=166.7

Q ss_pred             CCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy7914         185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ  264 (365)
Q Consensus       185 ~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~  264 (365)
                      .++|+|++|+|||||.||||||++++++|+++||+||+||+|++++|+||||++|+.+|+++|++|+++++++.+.|+++
T Consensus         8 ~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~   87 (542)
T 3u1f_A            8 EKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKC   87 (542)
T ss_dssp             CCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc--------cCCCccCCCCc
Q psy7914         265 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD--------EQGISWRSGAR  336 (365)
Q Consensus       265 l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve--------~~~~c~~~g~~  336 (365)
                      +++|||++||  +++|+++.|.+.|+++|.+|+++|+||++.+.++||++|++||++++|+        .++.|..||.+
T Consensus        88 ~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~~~~~sg~~  165 (542)
T 3u1f_A           88 FEQMDYSIDY--FIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLESGHV  165 (542)
T ss_dssp             HHHHTCCCSE--EEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTCCB
T ss_pred             HHHhCCccCc--CccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCccccccCCCCCc
Confidence            9999999995  5789999999999999999999999999999999999999999999986        23468899999


Q ss_pred             cEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914         337 VEKRRLSQWFIRTTRLANLVSLVDS  361 (365)
Q Consensus       337 ~e~~~~~~~ff~Ls~~~~~L~~~~~  361 (365)
                      +|.+.+++|||++++|+++|.++..
T Consensus       166 ve~~~~~~~f~~l~~~~~~l~~~~~  190 (542)
T 3u1f_A          166 VTWVSEENYMFRLSAFRERLLEWYH  190 (542)
T ss_dssp             EEEEEEEEEEECGGGGHHHHHHHHH
T ss_pred             ceeeccccceecchhHHHHHHHHHh
Confidence            9999999999999999999998764

>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*

Probab=100.00  E-value=1.6e-39  Score=352.42  Aligned_cols=176  Identities=49%  Similarity=0.964  Sum_probs=169.2

Q ss_pred             CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy7914         184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKS  263 (365)
Q Consensus       184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~  263 (365)
                      ++++++++++||||||+|||||+|+++++|+++||+||+||+|++++|+||||+||+..|.+.|++|+++++++.+.|++
T Consensus        31 ~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~  110 (878)
T 2v0c_A           31 GRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKE  110 (878)
T ss_dssp             ---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccC-CCCccEEEEe
Q psy7914         264 QLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWR-SGARVEKRRL  342 (365)
Q Consensus       264 ~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~-~g~~~e~~~~  342 (365)
                      +|++|||++||++++.|+++.|.+.++++|.+|+++|+||++.+.++||+.|+|+|++.||+ +|+|+. ||.+++++++
T Consensus       111 ~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~-~g~~~~~~~~~~~~~~~  189 (878)
T 2v0c_A          111 SLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVV-EGRCWRHEDTPVEKREL  189 (878)
T ss_dssp             HHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEE-TTEESSCTTCBCEEEEE
T ss_pred             HHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHh-cCCCcccCCCceEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999996 889999 9999999999


Q ss_pred             eeeeEeCchhHHHHHhhh
Q psy7914         343 SQWFIRTTRLANLVSLVD  360 (365)
Q Consensus       343 ~~~ff~Ls~~~~~L~~~~  360 (365)
                      ++|||+|++|+++|.++.
T Consensus       190 ~~~f~~l~~~~~~L~~~l  207 (878)
T 2v0c_A          190 EQWYLRITAYAERLLKDL  207 (878)
T ss_dssp             EEEEECGGGGHHHHHHTT
T ss_pred             ceeeEecchhHHHHHHHh
Confidence            999999999999988765

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1

Probab=100.00  E-value=1.9e-39  Score=345.84  Aligned_cols=174  Identities=25%  Similarity=0.335  Sum_probs=165.6

Q ss_pred             CceEEEecCCCCCCCCchHHHHH-HHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy7914         186 DNFYVLSMFPYPSGSLHMGHVRV-YTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ  264 (365)
Q Consensus       186 ~~~~I~~~~PnpnG~LHiGHar~-~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~  264 (365)
                      ++++|++++|||||+|||||+++ ++++|+++||+||+||+|++++|+|+||+||+.+|++.|++|+++++++.+.|+++
T Consensus         2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~   81 (722)
T 1rqg_A            2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKIT   81 (722)
T ss_dssp             CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            47999999999999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc-------------------
Q psy7914         265 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD-------------------  325 (365)
Q Consensus       265 l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve-------------------  325 (365)
                      +++|||++|  .+++|+++.|.+.++++|.+|+++|+||++.+.+|||+.|++||+|++|+                   
T Consensus        82 ~~~lgis~D--~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~  159 (722)
T 1rqg_A           82 FQRAKISFD--FFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVC  159 (722)
T ss_dssp             HHHHTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSS
T ss_pred             HHHhCCCCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhc
Confidence            999999988  46889999999999999999999999999999999999999999998764                   


Q ss_pred             ---------cCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914         326 ---------EQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDS  361 (365)
Q Consensus       326 ---------~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~  361 (365)
                               .+|+|++||.+++++.++||||+|++|+++|.+++.
T Consensus       160 G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~  204 (722)
T 1rqg_A          160 GRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIE  204 (722)
T ss_dssp             CCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHH
T ss_pred             ccccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHH
Confidence                     246788899999999999999999999999998873

>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A

Probab=100.00  E-value=7.4e-38  Score=325.10  Aligned_cols=180  Identities=22%  Similarity=0.313  Sum_probs=165.0

Q ss_pred             CCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHH
Q psy7914         180 EGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIA  259 (365)
Q Consensus       180 ~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~  259 (365)
                      .++.++++++|+.++|||||+|||||+|+++++|+++||+|++|++|.+++|+||||++|+..|++.|+++.++++++.+
T Consensus        12 ~~~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~   91 (560)
T 3h99_A           12 SMTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQ   91 (560)
T ss_dssp             -----CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             CCCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHH
Confidence            34556778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc--------------
Q psy7914         260 TMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD--------------  325 (365)
Q Consensus       260 ~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve--------------  325 (365)
                      .|+++|++|||++|  .+++|+++.|.+.++++|.+|.++|+||++++.+|||+.|+++|++.+|+              
T Consensus        92 ~~~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd  169 (560)
T 3h99_A           92 EHQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGD  169 (560)
T ss_dssp             HHHHHHHHTTCCCS--EEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETT
T ss_pred             HHHHHHHHcCCCCC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccc
Confidence            99999999999888  77889999999999999999999999999999999999999999998874              


Q ss_pred             --------------cCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914         326 --------------EQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDS  361 (365)
Q Consensus       326 --------------~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~  361 (365)
                                    .+++|.+||.+++++.+++|||+|++|+++|.++..
T Consensus       170 ~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~  219 (560)
T 3h99_A          170 NCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTR  219 (560)
T ss_dssp             BCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHH
T ss_pred             hhhhccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHH
Confidence                          123456677899999999999999999999988874

>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}

Probab=100.00  E-value=3.2e-37  Score=318.74  Aligned_cols=175  Identities=21%  Similarity=0.388  Sum_probs=167.0

Q ss_pred             CCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy7914         185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ  264 (365)
Q Consensus       185 ~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~  264 (365)
                      +++++|+.|+|||||+|||||+|+++++|+++||+|++|++|.+++|+||||++|+..|.+.|.+|.++++++.+.|+++
T Consensus        24 ~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~  103 (536)
T 4dlp_A           24 REKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRM  103 (536)
T ss_dssp             CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccC--C-CccCCCCccEEEE
Q psy7914         265 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQ--G-ISWRSGARVEKRR  341 (365)
Q Consensus       265 l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~--~-~c~~~g~~~e~~~  341 (365)
                      |++|||++|  .+++|+++.|.+.++++|.+|.++|++|++++.+|||+.|++++++.+++.+  | .|..||.++|++.
T Consensus       104 l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~~~  181 (536)
T 4dlp_A          104 AEVLNSSND--DYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVE  181 (536)
T ss_dssp             HHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCEEEE
T ss_pred             HHHcCCCCC--cceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcceEEe
Confidence            999999998  6788999999999999999999999999999999999999999999999642  3 5899999999999


Q ss_pred             eeeeeEeCchhHHHHHhhhc
Q psy7914         342 LSQWFIRTTRLANLVSLVDS  361 (365)
Q Consensus       342 ~~~~ff~Ls~~~~~L~~~~~  361 (365)
                      +++|||+|++|+++|.++..
T Consensus       182 ~~~~f~~l~~~~~~l~~~~~  201 (536)
T 4dlp_A          182 EESYFFRLSAYQDKLLDLYE  201 (536)
T ss_dssp             EEEEEECGGGGHHHHHHHHH
T ss_pred             ccceEEecHHHHHHHHHHHH
Confidence            99999999999999988864

>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A

Probab=100.00  E-value=3.7e-37  Score=315.32  Aligned_cols=174  Identities=22%  Similarity=0.331  Sum_probs=166.5

Q ss_pred             CCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy7914         185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ  264 (365)
Q Consensus       185 ~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~  264 (365)
                      +++++|+.|+|||||+|||||+|+++++|+++||+|++|++|++++|+|+||++|+..|++.|+++.++++++.+.|+++
T Consensus         2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~   81 (500)
T 2d5b_A            2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRA   81 (500)
T ss_dssp             CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeee
Q psy7914         265 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQ  344 (365)
Q Consensus       265 l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~  344 (365)
                      |++|||++|  .+++|+++.|.+.++++|.+|+++|+||++++.++||+.|++++++.++. +|.|+.||.+++.+.+++
T Consensus        82 ~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~-~g~c~~~~~~v~~~~~~~  158 (500)
T 2d5b_A           82 WDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELV-EGLCPIHGRPVERRKEGN  158 (500)
T ss_dssp             HHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSB-TTBCTTTCSBCEEEEEEE
T ss_pred             HHHhCCcCC--CCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhcc-CCcCCCCCCeeeEEecCc
Confidence            999999888  66889999999999999999999999999999999999999999999984 789999999999999999


Q ss_pred             eeEeCchhHHHHHhhhc
Q psy7914         345 WFIRTTRLANLVSLVDS  361 (365)
Q Consensus       345 ~ff~Ls~~~~~L~~~~~  361 (365)
                      |||+|++|+++|.++..
T Consensus       159 wf~~l~~~~~~l~~~~~  175 (500)
T 2d5b_A          159 YFFRMEKYRPWLQEYIQ  175 (500)
T ss_dssp             EEECGGGGHHHHHHHHH
T ss_pred             eEEEcHHHHHHHHHHHH
Confidence            99999999999887654

>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*

Probab=100.00  E-value=3.9e-37  Score=317.10  Aligned_cols=176  Identities=22%  Similarity=0.354  Sum_probs=166.4

Q ss_pred             CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy7914         184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKS  263 (365)
Q Consensus       184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~  263 (365)
                      ++++++|++++|||||+|||||+|+++++|+++||+|++|++|.+++|+|+||++|+..|++.|.+|.++++++.+.|++
T Consensus        10 ~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~   89 (524)
T 2x1l_A           10 GSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQR   89 (524)
T ss_dssp             -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            34579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccC---CCcc-CCCCccEE
Q psy7914         264 QLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQ---GISW-RSGARVEK  339 (365)
Q Consensus       264 ~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~---~~c~-~~g~~~e~  339 (365)
                      ++++|||++|  .+++|+++.|.+.++++|.+|+++|+||++++.+|||+.|++++++.+++..   ..|+ .||.+++.
T Consensus        90 ~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~  167 (524)
T 2x1l_A           90 LQEKLNISFD--RFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTW  167 (524)
T ss_dssp             HHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEE
T ss_pred             HHHHcCCcCC--CCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceE
Confidence            9999999988  7788999999999999999999999999999999999999999999998642   3588 99999999


Q ss_pred             EEeeeeeEeCchhHHHHHhhhc
Q psy7914         340 RRLSQWFIRTTRLANLVSLVDS  361 (365)
Q Consensus       340 ~~~~~~ff~Ls~~~~~L~~~~~  361 (365)
                      +.+++|||+|++|+++|.++..
T Consensus       168 ~~~~qwF~~l~~~~~~l~~~~~  189 (524)
T 2x1l_A          168 TEEQTYFFRLSAYTDRLLALYE  189 (524)
T ss_dssp             EEEEEEEECGGGSHHHHHHHHH
T ss_pred             EecCCeEeeHHHHHHHHHHHHH
Confidence            9999999999999999987764

>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}

Probab=100.00  E-value=2.3e-37  Score=321.83  Aligned_cols=175  Identities=23%  Similarity=0.317  Sum_probs=165.2

Q ss_pred             CCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy7914         185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ  264 (365)
Q Consensus       185 ~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~  264 (365)
                      +++++|+.++|||||+|||||+|+++++|+++||+|++|++|.+++|+||||++|+..|++.|.+|+++++++.+.|+++
T Consensus        25 ~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~  104 (564)
T 3kfl_A           25 QKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQC  104 (564)
T ss_dssp             CCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccC-----CCc---cCCCCc
Q psy7914         265 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQ-----GIS---WRSGAR  336 (365)
Q Consensus       265 l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~-----~~c---~~~g~~  336 (365)
                      |++|||++|  .+++|+++.|.+.++++|++|.++|+||++.+.+|||+.|+++|++.++...     ..|   ..||.+
T Consensus       105 ~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~g~~c~~~~~~g~~  182 (564)
T 3kfl_A          105 FQEMNYDMN--YFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHV  182 (564)
T ss_dssp             HHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTSCB
T ss_pred             HHHcCCCCC--ccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCCCCEeccccCCCCc
Confidence            999999999  6788999999999999999999999999999999999999999999998522     345   248999


Q ss_pred             cEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914         337 VEKRRLSQWFIRTTRLANLVSLVDS  361 (365)
Q Consensus       337 ~e~~~~~~~ff~Ls~~~~~L~~~~~  361 (365)
                      ++++.+++|||+|++|+++|.+++.
T Consensus       183 ~~~~~~~~~f~~l~~~~~~l~~~~~  207 (564)
T 3kfl_A          183 VTWVEEENYMFRLSAFRERLLKYFH  207 (564)
T ss_dssp             CEEEEEEEEEECGGGGHHHHHHHHH
T ss_pred             cEEEecceeEEEHHHHHHHHHHHHH
Confidence            9999999999999999999998874

>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*

Probab=100.00  E-value=1.3e-37  Score=318.75  Aligned_cols=175  Identities=23%  Similarity=0.325  Sum_probs=136.2

Q ss_pred             CCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy7914         185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ  264 (365)
Q Consensus       185 ~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~  264 (365)
                      +++++|+.++|||||+|||||+|+++++|+++||+|++|++|++++|+|+||++|+.+|++.|.+|.++++++.+.|+++
T Consensus         4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~   83 (497)
T 2csx_A            4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKL   83 (497)
T ss_dssp             SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeee
Q psy7914         265 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQ  344 (365)
Q Consensus       265 l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~  344 (365)
                      +++|||++|  .+++|+++.|.+.++++|.+|+++|+||++.+.++||+.|++++++.++...|.|+.||.+++.+.+.+
T Consensus        84 ~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~  161 (497)
T 2csx_A           84 WEFLKIEYT--KFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPS  161 (497)
T ss_dssp             HHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------------------------------CCEE
T ss_pred             HHHhCCcCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecCc
Confidence            999999888  678899999999999999999999999999999999999999999999964489999999999999999


Q ss_pred             eeEeCchhHHHHHhhhc
Q psy7914         345 WFIRTTRLANLVSLVDS  361 (365)
Q Consensus       345 ~ff~Ls~~~~~L~~~~~  361 (365)
                      |||+|++|+++|.++..
T Consensus       162 wf~~l~~~~~~l~~~~~  178 (497)
T 2csx_A          162 YFFRLSKYQDKLLELYE  178 (497)
T ss_dssp             EEECTTSSHHHHHHHHH
T ss_pred             eEEEcHHHHHHHHHHHH
Confidence            99999999999887754

>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*

Probab=100.00  E-value=6.8e-37  Score=333.15  Aligned_cols=142  Identities=28%  Similarity=0.570  Sum_probs=136.6

Q ss_pred             CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCH------------H
Q psy7914         184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDP------------R  251 (365)
Q Consensus       184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~------------~  251 (365)
                      ++++|+|+++||||||.|||||+++++++|+++||+||+|++|++++|||+||+||+.+|++.|+++            +
T Consensus        46 ~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~  125 (917)
T 1ffy_A           46 GNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCK  125 (917)
T ss_dssp             TSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHH
T ss_pred             CCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHH
Confidence            4467999999999999999999999999999999999999999999999999999999999999875            5


Q ss_pred             HHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc
Q psy7914         252 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD  325 (365)
Q Consensus       252 e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve  325 (365)
                      +|+.++.+.++++|++||+++||++++.|+++.|.+.++++|.+|+++|+||++.++++|||.|+|+|+++||+
T Consensus       126 ~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVe  199 (917)
T 1ffy_A          126 EFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIE  199 (917)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEE
T ss_pred             HHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCCcCcchhhhh
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999885

>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A

Probab=100.00  E-value=2.6e-36  Score=326.45  Aligned_cols=142  Identities=31%  Similarity=0.480  Sum_probs=133.3

Q ss_pred             CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH----cCCCH---------
Q psy7914         184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ----HGIDP---------  250 (365)
Q Consensus       184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~----~g~~~---------  250 (365)
                      ++++++|++|||||||.|||||+++++++|+++||+||+|++|++++|+|+||+|++.++++    .|+++         
T Consensus        32 ~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~  111 (862)
T 1gax_A           32 GKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFL  111 (862)
T ss_dssp             CSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHH
T ss_pred             CCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHH
Confidence            45689999999999999999999999999999999999999999999999999999998874    46554         


Q ss_pred             ---HHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc
Q psy7914         251 ---REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD  325 (365)
Q Consensus       251 ---~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve  325 (365)
                         ++|++++.+.|+++|++||+++||++++.|+|+.|.+.|+++|.+|+++|+||++.+.++|||.|+|+||+.||+
T Consensus       112 ~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV~  189 (862)
T 1gax_A          112 ERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVE  189 (862)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEEECGGGEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecccccccCCCcCccccccccc
Confidence               467899999999999999999999999999999999999999999999999999999999999999999998764

>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*

Probab=100.00  E-value=1.1e-36  Score=328.79  Aligned_cols=141  Identities=26%  Similarity=0.404  Sum_probs=134.0

Q ss_pred             CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc-CCCH------------
Q psy7914         184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH-GIDP------------  250 (365)
Q Consensus       184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~-g~~~------------  250 (365)
                      ++++++|+.+||||||+|||||+++++++|+++||+||+|++|++++|+|+||+||+..|++. |.++            
T Consensus        36 ~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f  115 (821)
T 1ile_A           36 GGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERF  115 (821)
T ss_dssp             TSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHH
T ss_pred             CCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHH
Confidence            346799999999999999999999999999999999999999999999999999999999985 8763            


Q ss_pred             ----HHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccccccc
Q psy7914         251 ----REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQV  324 (365)
Q Consensus       251 ----~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~ev  324 (365)
                          +++++++.+.++++|++||+++||+++++|+|+.|.+.++++|.+|+++|+||++.++++|||.|+|+|+|.||
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev  193 (821)
T 1ile_A          116 NQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEV  193 (821)
T ss_dssp             HHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeeecCcceEecCCCCCcccHhHh
Confidence                46788899999999999999999999999999999999999999999999999999999999999999999888

>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}

Probab=99.97  E-value=5.3e-32  Score=292.04  Aligned_cols=143  Identities=34%  Similarity=0.609  Sum_probs=134.8

Q ss_pred             CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc-----------------
Q psy7914         184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH-----------------  246 (365)
Q Consensus       184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~-----------------  246 (365)
                      ++++++|+++||||||+|||||+++++++|+++||+||+||+|++++|+|+||+||+..|.+.                 
T Consensus        32 ~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~  111 (810)
T 1wkb_A           32 KEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKV  111 (810)
T ss_dssp             GGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCC
T ss_pred             CCCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCC
Confidence            346899999999999999999999999999999999999999999999999999999887531                 


Q ss_pred             -------CCCHHHHHHHHHHHHHHHHHhcCCCccCCCcccccC--hhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCc
Q psy7914         247 -------GIDPREWTVGNIATMKSQLQGFGCKFNWESELATCD--PKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNT  317 (365)
Q Consensus       247 -------g~~~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d--~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t  317 (365)
                             +.+++++++++.+.|+++|++|||++||++++.|++  +.|.+.++++|.+|+++|+||++.+++||||.|+|
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t  191 (810)
T 1wkb_A          112 PEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGT  191 (810)
T ss_dssp             CHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCCCEEECCeeeeccCCcCC
Confidence                   346788999999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             ccccccccc
Q psy7914         318 VLADEQVDE  326 (365)
Q Consensus       318 ~Ls~~eve~  326 (365)
                      +|++.||++
T Consensus       192 ~La~~ev~~  200 (810)
T 1wkb_A          192 PLGDHDLME  200 (810)
T ss_dssp             ECCTTCCSB
T ss_pred             CccHHHHhc
Confidence            999999974

>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}

Probab=99.97  E-value=3.3e-32  Score=298.23  Aligned_cols=141  Identities=34%  Similarity=0.613  Sum_probs=134.1

Q ss_pred             CceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc---------------C---
Q psy7914         186 DNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH---------------G---  247 (365)
Q Consensus       186 ~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~---------------g---  247 (365)
                      ++++|+++||||||.|||||+++++++|+++||+||+||+|++.+|||+||+||+..|.+.               |   
T Consensus        34 ~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~  113 (967)
T 1wz2_A           34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPE  113 (967)
T ss_dssp             GCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCH
T ss_pred             CcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCH
Confidence            5799999999999999999999999999999999999999999999999999999887542               3   


Q ss_pred             ------CCHHHHHHHHHHHHHHHHHhcCCCccCCCcccccC--hhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccc
Q psy7914         248 ------IDPREWTVGNIATMKSQLQGFGCKFNWESELATCD--PKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVL  319 (365)
Q Consensus       248 ------~~~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d--~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~L  319 (365)
                            .+|++|++++.+.++++|++||+++||++++.|+|  |.|.+.++++|.+|+++|+||++.++++|||.|+|+|
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~L  193 (967)
T 1wz2_A          114 EILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPL  193 (967)
T ss_dssp             HHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEECCCCCEECTTTSCBC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEEeceEecccCCCCCCc
Confidence                  35788999999999999999999999999999999  9999999999999999999999999999999999999


Q ss_pred             ccccccc
Q psy7914         320 ADEQVDE  326 (365)
Q Consensus       320 s~~eve~  326 (365)
                      +|.||++
T Consensus       194 ad~Ev~~  200 (967)
T 1wz2_A          194 GDHDLME  200 (967)
T ss_dssp             CSSSCSS
T ss_pred             chhhhcc
Confidence            9999974

>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A

Probab=99.93  E-value=1.3e-26  Score=243.55  Aligned_cols=195  Identities=15%  Similarity=0.075  Sum_probs=149.8

Q ss_pred             CCCCchhhhccccceEEEecC--ccccccccccccCcceeEEEccchhhhhcCCcccccCCCCcccchhhHHHHHHhhhH
Q psy7914          80 LPEDTIEDVAKSQGQYITVKS--SHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLKLVCDGV  157 (365)
Q Consensus        80 t~~p~~~~~~~~~g~f~~l~~--~h~l~~~~~a~~~gf~n~~i~n~~~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~l  157 (365)
                      -++|..|+...    ...|..  +..+.+.+++|  |||||+|....+.                       ..++..++
T Consensus        54 ~~~P~~iA~~i----~~~l~~~~~~~i~~vevag--GfiN~~l~~~~~~-----------------------~~~~~~i~  104 (629)
T 2zue_A           54 KRPPIEIAEKI----VEKLKLNLPEGIKDVKAVN--GYINVFIDYPHFA-----------------------RILINDIL  104 (629)
T ss_dssp             TSCHHHHHHHH----HHHHTTSCCTTEEEEEEET--TEEEEEECHHHHH-----------------------HHHHHHHH
T ss_pred             CCCHHHHHHHH----HHHhhhccCCCeEEEEEcC--CEEEEEECHHHHH-----------------------HHHHHHHH
Confidence            35799999888    555654  45678899999  9999999999544                       04444443


Q ss_pred             HHHHhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCc
Q psy7914         158 YRRRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGL  237 (365)
Q Consensus       158 y~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~  237 (365)
                             ..++.||.+..+++.       ++.|.+.+|||||||||||+|++|++|+++|++++.||+|.+++++||+|.
T Consensus       105 -------~~~~~yG~~~~~~~~-------~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~  170 (629)
T 2zue_A          105 -------AKGDRFGSSEIGKGK-------KVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGI  170 (629)
T ss_dssp             -------HHGGGTTCCCTTTTC-------EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSH
T ss_pred             -------hcchhcCCCccCCCC-------EEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhH
Confidence                   345578876544333       688889999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHH---------------------------------------HcC--------------------CCHHHHHHHHH
Q psy7914         238 PAENAAH---------------------------------------QHG--------------------IDPREWTVGNI  258 (365)
Q Consensus       238 ~I~~~A~---------------------------------------~~g--------------------~~~~e~~~~~~  258 (365)
                      |+...+.                                       +.+                    ...+++++.+.
T Consensus       171 Q~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~  250 (629)
T 2zue_A          171 QFAQVYWGYLRLKEEFERIMNELRERGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVV  250 (629)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCcchhhhhhhcccccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            9654432                                       111                    22267789999


Q ss_pred             HHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE---eCcceeecCCCCccc
Q psy7914         259 ATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR---KEATVNWDPIDNTVL  319 (365)
Q Consensus       259 ~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~---~~~~v~yc~~~~t~L  319 (365)
                      +.|++++++|||.+|  .+.++++..+...+.+++++|.++|++|+   +....+||..+..+-
T Consensus       251 ~~f~~~~~~L~I~~D--~~~~es~~~~~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~~g  312 (629)
T 2zue_A          251 RAQMVTTYKLGVKYD--LLVWESDIVRRKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRKLF  312 (629)
T ss_dssp             HHHHHHHHHHTCCCS--EEEEHHHHHHTTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTTTC
T ss_pred             HHHHHHHHHcCCccc--cccCcCccccchhHHHHHHHHHHCCCccccccCCcCCcEEEECcccC
Confidence            999999999999998  55666666567889999999999999992   333344444555543

>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*

Probab=99.92  E-value=2.1e-25  Score=233.14  Aligned_cols=186  Identities=14%  Similarity=0.116  Sum_probs=146.5

Q ss_pred             CCCchhhhccccceEEEecCccccccccccccCcceeEEEccchhhhhcCCcccccCCCCcccchhhHHHH-HHhhhHHH
Q psy7914          81 PEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLK-LVCDGVYR  159 (365)
Q Consensus        81 ~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~~~gf~n~~i~n~~~~~~~~~p~~r~~~~~~~~~~~~~~~~-~~~~~ly~  159 (365)
                      ++|..|+...    ...+..+..+.+.+++| | ||||++....+.                        + ++...+  
T Consensus        81 ~~P~~iA~~i----~~~l~~~~~i~~ve~ag-~-fiN~~l~~~~~~------------------------~~~~~~i~--  128 (607)
T 1f7u_A           81 ANPKDLAVQW----AEKFPCGDFLEKVEANG-P-FIQFFFNPQFLA------------------------KLVIPDIL--  128 (607)
T ss_dssp             CCHHHHHHHH----HHTCCCTTTEEEEEEET-T-EEEEEECHHHHH------------------------HHHHHHHH--
T ss_pred             CCHHHHHHHH----HHhccccCceeEEEEcC-C-EEEEEECHHHHH------------------------HHHHHHHH--
Confidence            4799999888    55565555678889999 4 999999999988                        4 233333  


Q ss_pred             HHhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchH
Q psy7914         160 RRRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPA  239 (365)
Q Consensus       160 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I  239 (365)
                           ..++.||.+..+.+       ++++|.+.+|||||||||||+|+++++|+++|++++.||+|.++++++|+|.||
T Consensus       129 -----~~~~~~G~~~~~~~-------~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~  196 (607)
T 1f7u_A          129 -----TRKEDYGSCKLVEN-------KKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQF  196 (607)
T ss_dssp             -----HHGGGTTCCCCSSC-------CEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHH
T ss_pred             -----hhhhhcCCCcccCC-------CeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHH
Confidence                 23456887543332       368888999999999999999999999999999999999999999999999997


Q ss_pred             HHHH------------------------------------------------HH------cCCC-----HHHHHHHHHHH
Q psy7914         240 ENAA------------------------------------------------HQ------HGID-----PREWTVGNIAT  260 (365)
Q Consensus       240 ~~~A------------------------------------------------~~------~g~~-----~~e~~~~~~~~  260 (365)
                      ...+                                                ++      .|.+     .+++++...+.
T Consensus       197 ~~l~~~~~~~g~~~~~~~~~i~~l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~  276 (607)
T 1f7u_A          197 GLLAVGFERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEK  276 (607)
T ss_dssp             HHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCchhhccCCChHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence            5443                                                11      2332     24568899999


Q ss_pred             HHHHHHhcCCCccCCCcccccChhhH-HHHHHHHHHHHHCCCEEEeCcceeecCC
Q psy7914         261 MKSQLQGFGCKFNWESELATCDPKYY-KWTQALFLDLYHAGLVYRKEATVNWDPI  314 (365)
Q Consensus       261 i~~~l~~lgI~~D~~~~~~t~d~~~~-~~v~~~f~~L~~kG~Iy~~~~~v~yc~~  314 (365)
                      |++++++|||.+|  .+...++  |. ..+.++++.|.++|++|+.++.+|++..
T Consensus       277 ~~~~~~~L~V~fD--~~~~ES~--~~~~~~~~vi~~L~~kG~~ye~dGa~~~~~~  327 (607)
T 1f7u_A          277 YIDTYARLNIKYD--VYSGESQ--VSKESMLKAIDLFKEKGLTHEDKGAVLIDLT  327 (607)
T ss_dssp             HHHHHHHTTCCCS--EEEEGGG--CCHHHHHHHHHHHHHTTCEEEETTEEEEEGG
T ss_pred             HHHHHHHcCCcce--eecCcch--hhhhHHHHHHHHHHhCCCEEEECCcEEEEec
Confidence            9999999999998  2222222  33 5789999999999999999999998754

>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1

Probab=99.91  E-value=3.4e-25  Score=231.46  Aligned_cols=178  Identities=15%  Similarity=0.121  Sum_probs=142.7

Q ss_pred             CCCchhhhccccceEEEecCccccccccccccCcceeEEEccchhhhhcCCcccccCCCCcccchhhHHHHHHhhhHHHH
Q psy7914          81 PEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKSIVSSDPMLRDRKKPVCGESLNQVLKLVCDGVYRR  160 (365)
Q Consensus        81 ~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~~~gf~n~~i~n~~~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~ly~~  160 (365)
                      ++|..|+...    ...+..+..+.+.+++|  |||||+|....+.                       ..+....+   
T Consensus        49 ~~P~~iA~~i----~~~l~~~~~~~~~~~~g--gfiN~~l~~~~~~-----------------------~~~~~~~~---   96 (592)
T 1iq0_A           49 KPPQAIAQEL----KDRLPLPEFVEEAVPVG--GYLNFRLRTEALL-----------------------REALRPKA---   96 (592)
T ss_dssp             SCHHHHHHHH----HHTCCCCTTEEEEEEET--TEEEEEECHHHHH-----------------------HHHHSCCC---
T ss_pred             CCHHHHHHHH----HHhccccCcEEEEEEcC--CEEEEEECHHHHH-----------------------HHHHHHHH---
Confidence            5799999888    55565555678889999  9999999999644                       03333333   


Q ss_pred             HhhcCCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHH
Q psy7914         161 RRSISSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAE  240 (365)
Q Consensus       161 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~  240 (365)
                          ..++.||               ++.|++++|||||||||||+|++|++|+++|++++.||+|.+++++||+|.|+.
T Consensus        97 ----~~~~~~g---------------~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~  157 (592)
T 1iq0_A           97 ----PFPRRPG---------------VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAA  157 (592)
T ss_dssp             ----CCCCEEE---------------EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHH
T ss_pred             ----hcCcccC---------------eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHH
Confidence                3455565               389999999999999999999999999999999999999999999999998764


Q ss_pred             HHH----------------------------------------------HHcCCCHHHHHHHHHHHHHHHHHhcCCCccC
Q psy7914         241 NAA----------------------------------------------HQHGIDPREWTVGNIATMKSQLQGFGCKFNW  274 (365)
Q Consensus       241 ~~A----------------------------------------------~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D~  274 (365)
                      ...                                              .+.|. .+++++.+.+.|+++|++|||.+| 
T Consensus       158 ~li~~~~~~g~d~~~~~~~d~~~g~~y~~~~~~~~~~~~~~~a~~~~~~~e~g~-~~~~~~~~~~~~~~~~~~LgI~~D-  235 (592)
T 1iq0_A          158 ETLFALRHYGLTWDGKEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGE-LREEVNRILLAQMATMHALNARYD-  235 (592)
T ss_dssp             HHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHCTTTGGGHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHHHHTTCCCS-
T ss_pred             HHHHHHHHhCCcccCCCCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHhCCchH-HHHHHHHHHHHHHHHHHHcCCEeE-
Confidence            432                                              22333 277889999999999999999998 


Q ss_pred             CCcccccChhhHHHHHHHHHHHHHCCCEE-----EeCcceeec
Q psy7914         275 ESELATCDPKYYKWTQALFLDLYHAGLVY-----RKEATVNWD  312 (365)
Q Consensus       275 ~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy-----~~~~~v~yc  312 (365)
                       .+.++++..+...+++++++|.++|++|     +.++..|+.
T Consensus       236 -~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g~~~G~~~~~  277 (592)
T 1iq0_A          236 -LLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMD  277 (592)
T ss_dssp             -EEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSSTTTTCEEEE
T ss_pred             -EeccCCcccccchHHHHHHHHHHCCCcccCcccCcCCCEEEe
Confidence             5566766666788999999999999999     556555543

>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}

Probab=99.90  E-value=1.5e-23  Score=212.31  Aligned_cols=128  Identities=16%  Similarity=0.111  Sum_probs=117.4

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      ++-+...+|||+|++||||+|++|++|+++||+|++||+|.++.|+||+|.+|..+|.+.|.+++++++++.+.|+++++
T Consensus        25 ~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~  104 (462)
T 3tqo_A           25 KVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEK  104 (462)
T ss_dssp             EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            45556679999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEe-CcceeecCCCCc
Q psy7914         267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK-EATVNWDPIDNT  317 (365)
Q Consensus       267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~-~~~v~yc~~~~t  317 (365)
                      +|||.+|+..   +....|...++++|++|+++|++|+. .+.||||+++..
T Consensus       105 ~LgI~~d~~~---praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~  153 (462)
T 3tqo_A          105 ALRVLSPDQE---PRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFK  153 (462)
T ss_dssp             HHTCCCCSBC---CBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCT
T ss_pred             HcCCCCCccc---cChhhHHHHHHHHHHHHHHCCCEEEecCCcEEecccccc
Confidence            9999998433   23347999999999999999999999 799999998763

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}

Probab=99.90  E-value=1.3e-23  Score=210.68  Aligned_cols=125  Identities=18%  Similarity=0.161  Sum_probs=115.0

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      ++.+...+|+|+|++||||+|+++++|+++||+|+.||+|.+++|+||+|.+|+..|.+.|.++.++++.+.+.|+++|+
T Consensus        39 ~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~  118 (414)
T 3c8z_A           39 TATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMA  118 (414)
T ss_dssp             EEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            34555668999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCC-ccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeC----cceeecCCC
Q psy7914         267 GFGCK-FNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE----ATVNWDPID  315 (365)
Q Consensus       267 ~lgI~-~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~----~~v~yc~~~  315 (365)
                      +|||. +|  .+.++++  |...++++|++|.++|++|+++    +.+||+.+.
T Consensus       119 ~Lgi~~~d--~~~r~t~--~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~  168 (414)
T 3c8z_A          119 ALRVLPPH--DYVAATD--AIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADA  168 (414)
T ss_dssp             HTTCCCCS--EEEEGGG--CHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTS
T ss_pred             HcCCCCCc--ceecccc--hHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchh
Confidence            99998 88  4555654  8889999999999999999999    889998764

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B

Probab=99.89  E-value=8.7e-23  Score=207.35  Aligned_cols=126  Identities=17%  Similarity=0.097  Sum_probs=115.2

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      ++-+...+|+|+|++||||+|++|++|+++||+|+.||+|.+++++||+|.+|...|.+.|.+++++++.+.+.|+++++
T Consensus        22 ~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~~  101 (461)
T 1li5_A           22 EVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFD  101 (461)
T ss_dssp             EEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            35555668999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCc-cCCCcccccChhhHHHHHHHHHHHHHCCCEEEe-CcceeecCCCC
Q psy7914         267 GFGCKF-NWESELATCDPKYYKWTQALFLDLYHAGLVYRK-EATVNWDPIDN  316 (365)
Q Consensus       267 ~lgI~~-D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~-~~~v~yc~~~~  316 (365)
                      +|||.+ |  .+.++++  |.+.+++++++|.++|++|+. ++.+|||+.+.
T Consensus       102 ~LgI~~~d--~~~r~t~--~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~  149 (461)
T 1li5_A          102 ALNILRPD--MEPRATH--HIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD  149 (461)
T ss_dssp             HTTCCCCS--BCCBGGG--CHHHHHHHHHHHHHTTSEEECTTSCEEECGGGC
T ss_pred             HcCCCCCc--ccccccc--hHHHHHHHHHHHHHCCCEEEecCCCEEEecccc
Confidence            999998 5  3344443  889999999999999999999 99999998863

>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}

Probab=99.88  E-value=6.6e-23  Score=208.88  Aligned_cols=125  Identities=16%  Similarity=0.117  Sum_probs=101.0

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCC----------CCCCchHHHHHHHcCCCHHHHHHHH
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGW----------DAFGLPAENAAHQHGIDPREWTVGN  257 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~----------Dd~G~~I~~~A~~~g~~~~e~~~~~  257 (365)
                      +-+...+|+|+|++||||+|++|++|+++||+|++||+|.++.|+          |+||++|+.+|++.|++|+++++++
T Consensus        43 v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~~  122 (501)
T 3sp1_A           43 VKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFF  122 (501)
T ss_dssp             EEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHHH
T ss_pred             ceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHHH
Confidence            444556799999999999999999999999999999999999665          5559999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCC
Q psy7914         258 IATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPID  315 (365)
Q Consensus       258 ~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~  315 (365)
                      .+.|++++++|||.+||  +. +.++.|+..++++|++|+++|++|++++.||||+++
T Consensus       123 ~~~f~~d~~~Lgi~~d~--~~-~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~  177 (501)
T 3sp1_A          123 TEAFFNDCRKLNIVYPD--KV-LVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC  177 (501)
T ss_dssp             HHHHHHHHHHTTCCCCS--EE-EEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG
T ss_pred             HHHHHHHHHHcCCCCCC--cc-cCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc
Confidence            99999999999999994  23 557899999999999999999999999999999987

>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}

Probab=99.85  E-value=2.8e-21  Score=196.18  Aligned_cols=137  Identities=21%  Similarity=0.268  Sum_probs=109.7

Q ss_pred             CCCCCccccCCCCCcCCCCCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHH
Q psy7914         165 SSPSDFGVSSVGGTLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAH  244 (365)
Q Consensus       165 ~~~~~~g~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~  244 (365)
                      ..++.||+... ++       ++++|+++|||||||||+||+|+++++|+++|++++.||+|++++++||+|+||...+.
T Consensus        17 ~~~~~yG~~~~-~~-------~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~   88 (464)
T 3fnr_A           17 TNPNDFTKGEK-KQ-------ESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGL   88 (464)
T ss_dssp             HSGGGTTCCCC-CS-------CEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHH
T ss_pred             HhHHhcCCCCC-CC-------CEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHH
Confidence            45667887643 22       37899999999999999999999999999999999999999999999999999966642


Q ss_pred             -------H--cCCC---H---------------------------------HHH-HHHHHHHHHHHHHhcCCCcc-CCCc
Q psy7914         245 -------Q--HGID---P---------------------------------REW-TVGNIATMKSQLQGFGCKFN-WESE  277 (365)
Q Consensus       245 -------~--~g~~---~---------------------------------~e~-~~~~~~~i~~~l~~lgI~~D-~~~~  277 (365)
                             +  .|.+   |                                 +++ ++..++.|+++|++|||.|| |+.+
T Consensus        89 ~~~~~y~~~~~~~~~~~p~~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~E  168 (464)
T 3fnr_A           89 SILLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSE  168 (464)
T ss_dssp             HHHHHHHHHTSCCCCCCCSSCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEG
T ss_pred             HHHHHHHHHhcCCCCCCchhhcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCH
Confidence                   1  1211   0                                 111 35567889999999999999 6555


Q ss_pred             ccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCC
Q psy7914         278 LATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPI  314 (365)
Q Consensus       278 ~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~  314 (365)
                      .+.++     .+.++++.|.++|++|+++++.|+...
T Consensus       169 ss~~~-----~~~~vv~~L~~~g~~~e~dGa~~~~~~  200 (464)
T 3fnr_A          169 RSYYD-----ALNATLESLKEHKGIYEQEGKIWLASS  200 (464)
T ss_dssp             GGGST-----THHHHHHHHHHTTCEEEETTEEEECGG
T ss_pred             HHHHH-----HHHHHHHHHHHCCCEEEeCCeEEEEec
Confidence            44333     679999999999999999999998653

>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.75  E-value=1.8e-18  Score=177.42  Aligned_cols=162  Identities=17%  Similarity=0.163  Sum_probs=87.9

Q ss_pred             hhhcCCcccccCCCCcccchhhHHHHHHhhhHHHHHhhcCC--CCCcc-ccCCCCCcCCCCCCCceEEEecCCCCCCCCc
Q psy7914         126 SIVSSDPMLRDRKKPVCGESLNQVLKLVCDGVYRRRRSISS--PSDFG-VSSVGGTLEGKRREDNFYVLSMFPYPSGSLH  202 (365)
Q Consensus       126 ~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~--~~~~g-~~~~~~~~~~~~~~~~~~I~~~~PnpnG~LH  202 (365)
                      .|||++|+||++++++.+.+++.+.+++.+++.++...++.  ++.+. +.+..++.++.++..+-+++.++|+|||+||
T Consensus        31 ~~~~~~pelr~~~~e~~~~~~~~v~~vn~~~~e~~~~~l~~~~pe~~~~~~~~~~~~~~L~~~~g~v~tRFaPsPtG~LH  110 (553)
T 3aii_A           31 AVMSNEPELRKMAPQVKEAVEAAVERVNSLSPEEQQQEMERLGLEITERKQKKRKGLRELAGVKGEVVLRFAPNPSGPLH  110 (553)
T ss_dssp             --------------------------------------------------------CCCCSSCCSCCEEEECCCSSSSCB
T ss_pred             hhhccChhhhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHhChhhhhhhhhhcccCCCCCCCCCceEEEeCCCCCCCcc
Confidence            48999999999999999999999999999999888777653  44443 2222334455555555689999999999999


Q ss_pred             hHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCccCCCcccccC
Q psy7914         203 MGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCD  282 (365)
Q Consensus       203 iGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d  282 (365)
                      |||+|++++...+||  .+.|.-++++..+|+.                .-..++.+.|.++|++||+.+|  ..  +..
T Consensus       111 IGhaRtal~n~l~Ar--~~~G~~iLRieDtD~~----------------R~~~e~~~~I~edL~wLGl~wd--~~--~~q  168 (553)
T 3aii_A          111 IGHARAAILNHEYAR--KYDGRLILRIEDTDPR----------------RVDPEAYDMIPADLEWLGVEWD--ET--VIQ  168 (553)
T ss_dssp             HHHHHHHHHHHHHHH--HTTCEEEEEECCCCGG----------------GCCTTHHHHHHHHHHHHTCCCS--EE--EEG
T ss_pred             HHHHHHHHHHHHHHH--HcCCEEEEEECcCCcc----------------cccHHHHHHHHHHHHHcCCCCC--CC--ccc
Confidence            999999999999998  6788888888888752                1135789999999999999666  43  344


Q ss_pred             hhhHHHHHHHHHHHHHCCCEEEeCcceeecCC
Q psy7914         283 PKYYKWTQALFLDLYHAGLVYRKEATVNWDPI  314 (365)
Q Consensus       283 ~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~  314 (365)
                      ..|.....+++.+|.++|++|.     +||..
T Consensus       169 Sdr~~~y~~~~~~Li~~G~AY~-----c~cs~  195 (553)
T 3aii_A          169 SDRMETYYEYTEKLIERGGAYV-----CTCRP  195 (553)
T ss_dssp             GGGHHHHHHHHHHHHHTTSEEE-----ECSCH
T ss_pred             ccCHHHHHHHHHHHHHcCCcee-----CCCCH
Confidence            4578888999999999999996     55544

>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1

Probab=99.71  E-value=4.3e-18  Score=175.34  Aligned_cols=112  Identities=13%  Similarity=0.186  Sum_probs=95.8

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCC--chH---HHHHHHc--CCCH----------
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFG--LPA---ENAAHQH--GIDP----------  250 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G--~~I---~~~A~~~--g~~~----------  250 (365)
                      .+|....|||||+|||||+|+++++|+++|+++++|++|.+++++||+|  .+|   ...|.+.  |.++          
T Consensus        21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~  100 (523)
T 1irx_A           21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH  100 (523)
T ss_dssp             EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred             eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence            5777778999999999999999999999999999999999999999999  777   4455555  8887          


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHH-HHHHHHHHHHHCC-CEE
Q psy7914         251 REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYK-WTQALFLDLYHAG-LVY  303 (365)
Q Consensus       251 ~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~-~v~~~f~~L~~kG-~Iy  303 (365)
                      +++++.+.+.|+++|++|||.+|  .+ ++++. |.. .+++++++|.++| .||
T Consensus       101 ~~~~~~~~~~~~~~l~~Lgi~~D--~~-~~se~-~~~g~~~~~i~~L~~~G~~iy  151 (523)
T 1irx_A          101 ESYAEHFMRKFEEEVEKLGIEVD--LL-YASEL-YKRGEYSEEIRLAFEKRDKIM  151 (523)
T ss_dssp             SSHHHHHHHHHHHHHHTTTCCCE--EE-EHHHH-HHTTTTHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCce--EE-echhh-ccchHHHHHHHHHHHchHHHH
Confidence            88999999999999999999887  33 44433 666 7889999999999 444

>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*

Probab=99.53  E-value=4.4e-15  Score=160.73  Aligned_cols=77  Identities=29%  Similarity=0.513  Sum_probs=70.2

Q ss_pred             hhhhHHHHHhccCCCCCCCChh-HHHHHhcccccccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceE
Q psy7914          17 GRAGAMDLYEGLSDPILQDWKD-IVNLQKHWIGEPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQY   95 (365)
Q Consensus        17 ~~~ya~~Ll~~l~~~~l~~w~~-v~~mQ~nWIG~~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f   95 (365)
                      -++||++|+++|+.  +++||+ |++||+||||||+|+.|.|++.+.          +..|.||||+|+||++++    |
T Consensus       215 i~~y~~~Ll~~l~~--~~~wp~~v~~~~~~wig~s~g~~v~f~~~~~----------~~~i~v~TTrP~Tl~g~t----~  278 (880)
T 4arc_A          215 ITAYADELLNDLDK--LDHWPDTVKTMQRNWIGRSEGVEITFNVNDY----------DNTLTVYTTRPDTFMGCT----Y  278 (880)
T ss_dssp             GGGGHHHHHHHGGG--CTTSCHHHHHHHHHHHCEEEEEEEEEEETTC----------SSEEEEEESCGGGGGGCC----E
T ss_pred             echhHHHHHHHHhh--cccccHHHHHHHHhhhccccceEEEEEecCC----------CceEEEEeCCchhhcCCe----E
Confidence            47899999999998  889999 999999999999999999999642          356999999999999999    9


Q ss_pred             EEecCccccccccc
Q psy7914          96 ITVKSSHILASKTK  109 (365)
Q Consensus        96 ~~l~~~h~l~~~~~  109 (365)
                      ++++|+|+++...+
T Consensus       279 vav~Pe~~~~~~~~  292 (880)
T 4arc_A          279 LAVAAGHPLAQKAA  292 (880)
T ss_dssp             EEECTTCHHHHHHG
T ss_pred             EEECCCcHHHHHHh
Confidence            99999999987654

>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}

Probab=99.31  E-value=4.2e-12  Score=129.31  Aligned_cols=105  Identities=16%  Similarity=0.166  Sum_probs=81.8

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      .++++.++|+|||+|||||+|+++++|.+||.  ..|..|+++..+|.                ....+.+.+.|.++|+
T Consensus        12 ~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRieDtD~----------------~r~~~~~~~~I~~~l~   73 (481)
T 2o5r_A           12 HMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIEDTDL----------------ERSEREYEEKLMESLR   73 (481)
T ss_dssp             -CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCSSC----------------CSGGGHHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEecCCc----------------cccHHHHHHHHHHHHH
Confidence            48899999999999999999999999999995  79999999876663                2233567888999999


Q ss_pred             hcCCCccCCCcc-------cccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCC
Q psy7914         267 GFGCKFNWESEL-------ATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDN  316 (365)
Q Consensus       267 ~lgI~~D~~~~~-------~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~  316 (365)
                      +||+.+|  ...       ......+.+...++.++|.++|.+|     .+||...+
T Consensus        74 wlGl~~d--e~p~~gg~~g~y~QS~r~~~y~~~a~~L~~~G~aY-----~c~ct~ee  123 (481)
T 2o5r_A           74 WLGLLWD--EGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAY-----YVYAYPEE  123 (481)
T ss_dssp             HHTCCCS--BBTTTBCTTCCCBGGGGHHHHHHHHHHHHHTTSEE-----EECCCSTT
T ss_pred             HcCCCCC--CCcccCCCCCceeeeccHHHHHHHHHHHHHCCCee-----EecCCHHH
Confidence            9999766  310       1123445677788999999999987     34665543

>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*

Probab=99.30  E-value=1.5e-12  Score=141.44  Aligned_cols=76  Identities=20%  Similarity=0.369  Sum_probs=68.3

Q ss_pred             chhhhHHHHHhccCCCCCCCChh-HHHHHhcccccccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccce
Q psy7914          16 SGRAGAMDLYEGLSDPILQDWKD-IVNLQKHWIGEPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQ   94 (365)
Q Consensus        16 ~~~~ya~~Ll~~l~~~~l~~w~~-v~~mQ~nWIG~~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~   94 (365)
                      ..++||++|+++|++  +. ||+ |++||+||||+|.|+.|.|++.+.          +..|.||||+|+||++++    
T Consensus       195 ~l~~~~~~L~~~l~~--~~-~p~~~~~~~~~wi~~s~g~~v~f~~~~~----------~~~l~v~TTrP~Tl~g~~----  257 (878)
T 2v0c_A          195 RITAYAERLLKDLEG--LN-WPEKVKAMQRAWIGRSEGAEILFPVEGK----------EVRIPVFTTRPDTLFGAT----  257 (878)
T ss_dssp             CGGGGHHHHHHTTTT--CB-SCHHHHHHHHHHHCEEEEEEEEEEBTTS----------SCEEEEEESCGGGGGGCC----
T ss_pred             ecchhHHHHHHHhhh--cC-CCHHHHHHHHHHhccccCceEEEEecCC----------CceEEEEeCCchhhhCcE----
Confidence            357899999999997  65 999 999999999999999999998642          456999999999999999    


Q ss_pred             EEEecCcccccccc
Q psy7914          95 YITVKSSHILASKT  108 (365)
Q Consensus        95 f~~l~~~h~l~~~~  108 (365)
                      +++++|+|+++...
T Consensus       258 ~vav~pe~~~~~~~  271 (878)
T 2v0c_A          258 FLVLAPEHPLTLEL  271 (878)
T ss_dssp             EEEECTTSHHHHHH
T ss_pred             EEEEcCCCeeeehh
Confidence            99999999988654

>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}

Probab=99.27  E-value=9.7e-12  Score=129.45  Aligned_cols=94  Identities=17%  Similarity=0.194  Sum_probs=77.0

Q ss_pred             EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914         189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF  268 (365)
Q Consensus       189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l  268 (365)
                      +++.++|+|||+|||||+|++++++.+||  ...|..++++-.+|.                ..-...+.+.|.++|++|
T Consensus       130 v~~RFaPsPTG~LHiG~artAl~n~l~Ar--~~~G~~ilRieDtD~----------------~r~~~~~~~~I~~dL~wl  191 (592)
T 3al0_C          130 VRVRFAPSPTGHLHVGGARTALFNWMFAR--KEGGKFILRIEDTDT----------------ERSSREYEQQILESLRWC  191 (592)
T ss_dssp             CEEEECCCSSSCCBHHHHHHHHHHHHHHH--HHTCEEEECBCCCCS----------------SSCCHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHHHHH--hcCCcEEEEecCcCh----------------hhccHHHHHHHHHHHHHc
Confidence            66777799999999999999999999999  579999999977773                122357889999999999


Q ss_pred             CCCccCCCc---------ccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914         269 GCKFNWESE---------LATCDPKYYKWTQALFLDLYHAGLVYR  304 (365)
Q Consensus       269 gI~~D~~~~---------~~t~d~~~~~~v~~~f~~L~~kG~Iy~  304 (365)
                      ||.+|  ..         ++.+  .+.+...+++.+|.++|++|.
T Consensus       192 Gl~~D--~~~~~gG~~gp~~qS--er~~~y~~~~~~L~~~G~aY~  232 (592)
T 3al0_C          192 GLDWD--EGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYY  232 (592)
T ss_dssp             TCCCS--BBTTTBCTTCCCBST--TCHHHHHHHHHHHHHTTTEEE
T ss_pred             CCCCC--CCCCcCCCCCCeeee--CCHHHHHHHHHHHHHcCCceE
Confidence            99776  42         2333  345777899999999999995

>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A

Probab=99.25  E-value=1.5e-11  Score=126.25  Aligned_cols=96  Identities=18%  Similarity=0.345  Sum_probs=79.5

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG  267 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~  267 (365)
                      -+++.++|.|||+|||||||++++...+||  .+.|.-|+++..+|+                .....++.+.|.++|++
T Consensus        26 ~v~tRFaPSPtG~LHIGhaRtal~n~l~Ar--~~gG~fiLRieDTD~----------------~R~~~e~~~~I~edL~w   87 (553)
T 1qtq_A           26 TVHTRFPPEPNGYLHIGHAKSICLNFGIAQ--DYKGQCNLRFDDTNP----------------VKEDIEYVESIKNDVEW   87 (553)
T ss_dssp             SCEEEECCCTTSCCBHHHHHHHHHHHHHHH--HTTCEEEEEECCCCG----------------GGCCHHHHHHHHHHHHH
T ss_pred             ceEEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCCc----------------hhcCHHHHHHHHHHHHH
Confidence            378999999999999999999999999999  778999999988886                12346889999999999


Q ss_pred             cCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914         268 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  304 (365)
Q Consensus       268 lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~  304 (365)
                      ||+.+|  .. .+....|.....+...+|.++|++|.
T Consensus        88 LGl~wd--e~-~~~qSer~~~~~~~a~~Li~~G~AY~  121 (553)
T 1qtq_A           88 LGFHWS--GN-VRYSSDYFDQLHAYAIELINKGLAYV  121 (553)
T ss_dssp             TTCCCS--SS-CEEGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred             cCCCCC--CC-CeehcccHHHHHHHHHHHHHCCCcee
Confidence            999775  22 23344566667788889999999996

>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*

Probab=99.24  E-value=1.3e-11  Score=118.51  Aligned_cols=95  Identities=25%  Similarity=0.264  Sum_probs=77.3

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG  267 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~  267 (365)
                      -+++.++|+|||+|||||+|++++...+||  ...|.-++++..+|+-                .-..++.+.|.++|++
T Consensus         5 ~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar--~~~g~~ilRieDtD~~----------------R~~~~~~~~I~~dL~~   66 (298)
T 1nzj_A            5 QYIGRFAPSPSGELHFGSLIAALGSYLQAR--ARQGRWLVRIEDIDPP----------------REVPGAAETILRQLEH   66 (298)
T ss_dssp             CCEEEECCCTTSCCCHHHHHHHHHHHHHHH--HTTCEEEEEECCSCGG----------------GSCTTHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCCccHHHHHHHHHHHHHHH--hcCCeEEEEEecCCch----------------hhHHHHHHHHHHHHHH
Confidence            378899999999999999999999988888  5678888888877742                1125789999999999


Q ss_pred             cCCCccCCC-cccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914         268 FGCKFNWES-ELATCDPKYYKWTQALFLDLYHAGLVYR  304 (365)
Q Consensus       268 lgI~~D~~~-~~~t~d~~~~~~v~~~f~~L~~kG~Iy~  304 (365)
                      |||.+|  . .++.+  ++.+...+++++|.++|++|.
T Consensus        67 LGl~~D--~~~~~qS--er~~~y~~~~~~L~~~G~aY~  100 (298)
T 1nzj_A           67 YGLHWD--GDVLWQS--QRHDAYREALAWLHEQGLSYY  100 (298)
T ss_dssp             TTCCCS--SCCEEGG--GCHHHHHHHHHHHHHTTCEEE
T ss_pred             cCCCCC--CCCeeee--CCHHHHHHHHHHHHHcCCccc
Confidence            999777  3 23333  356778899999999999995

>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}

Probab=99.20  E-value=3.2e-11  Score=122.62  Aligned_cols=103  Identities=17%  Similarity=0.268  Sum_probs=81.2

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG  267 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~  267 (365)
                      .+++.++|.|||+|||||+|++++.+.++|  ...|..++++..+|.                .....++.+.|.++|++
T Consensus        25 ~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar--~~~G~filRieDtD~----------------~R~~~~~~~~i~~dl~w   86 (490)
T 4g6z_A           25 PVRTRFAPSPTGFIHLGNIRSALYPWAFAR--KMKGTFVLRIEDTDV----------------ERSSQEAVDAILEGMAW   86 (490)
T ss_dssp             CCEEEECCCCCSCCBHHHHHHHHHHHHHHH--HTTCEEEEEECCCCG----------------GGCCHHHHHHHHHHHHH
T ss_pred             CceEEeCCCCCCCccHHHHHHHHHHHHHHH--hcCCeEEEEeCCCCc----------------ccccHHHHHHHHHHHHH
Confidence            477899999999999999999999999999  578999999988885                12236889999999999


Q ss_pred             cCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCC
Q psy7914         268 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDN  316 (365)
Q Consensus       268 lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~  316 (365)
                      |||.+|  .. ......+.+...+++.+|.++|++|     .|||...+
T Consensus        87 lGl~~d--~~-~~~qS~r~~~y~~~~~~Li~~G~aY-----~C~ct~ee  127 (490)
T 4g6z_A           87 LGLDYD--EG-PYYQMQRMDRYREVLAQMQEKGLVY-----PCYMSTEE  127 (490)
T ss_dssp             TTCCCS--EE-EEEGGGCHHHHHHHHHHHHHTTSEE-----EECC----
T ss_pred             cCCCCC--CC-CcccccCHHHHHHHHHHHHHCCCEE-----eCCCCHHH
Confidence            999766  32 1234456777889999999999998     34665544

>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}

Probab=99.18  E-value=4.3e-11  Score=127.95  Aligned_cols=96  Identities=20%  Similarity=0.206  Sum_probs=81.1

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG  267 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~  267 (365)
                      .+++.++|.|||+|||||+|++++...+||  .+.|.-|+++..+|+.                .-..++.+.|.++|++
T Consensus        66 ~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar--~~gG~fiLRIEDTD~~----------------R~~~e~~~~IledL~w  127 (851)
T 2hz7_A           66 RVVTRFPPDPSGYAHLGHVFASLLDFNTAR--QYGGQFNLRMDDTNPE----------------LARQEYVDSIADDLKW  127 (851)
T ss_dssp             SCEEEECCCSSSCCBHHHHHHHHHHHHHHH--HTTCEEEEEECCCCTT----------------TCCHHHHHHHHHHHHH
T ss_pred             ceEEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECcCCcc----------------cccHHHHHHHHHHHHH
Confidence            378999999999999999999999999999  6789999999888862                1146889999999999


Q ss_pred             cCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914         268 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR  304 (365)
Q Consensus       268 lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~  304 (365)
                      ||+.+|  .. .+....|.....+++.+|.++|++|.
T Consensus       128 LGl~wd--e~-~~~qSer~d~y~e~a~~LI~~G~AY~  161 (851)
T 2hz7_A          128 LGLDWG--EH-FYYASDYFDRYYAYAEQLIRQGDAYV  161 (851)
T ss_dssp             HTCCCT--TC-EEEGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred             cCCCCC--CC-cccHhhhHHHHHHHHHHHHHCCCcEe
Confidence            999765  22 23445678888999999999999996

>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}

Probab=99.13  E-value=8.8e-11  Score=119.82  Aligned_cols=100  Identities=19%  Similarity=0.229  Sum_probs=80.7

Q ss_pred             EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914         189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF  268 (365)
Q Consensus       189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l  268 (365)
                      +++.++|.|||+|||||+|++++...+||  ...|.-|+++..+|..-.                ..++.+.|.++|++|
T Consensus         2 v~~RFAPSPtG~lHiG~artal~n~l~Ar--~~~G~filRieDtD~~R~----------------~~~~~~~i~~dL~wL   63 (492)
T 2cfo_A            2 VRVRLAPSPTGNLHIGTARTAVFNWLYAR--HRGGKFILRIEDTDRERS----------------RPEYTENILEGLQWL   63 (492)
T ss_dssp             CEEEECCCTTSCCBHHHHHHHHHHHHHHH--HTTCEEEEEECCCSSSSC----------------CHHHHHHHHHHHHHT
T ss_pred             ceEEeCCCCCCCccHHHHHHHHHHHHHHH--hcCCeEEEEEeeCCcccc----------------chHHHHHHHHHHHHc
Confidence            56899999999999999999999999998  678999999998885111                257889999999999


Q ss_pred             CCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCC
Q psy7914         269 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPI  314 (365)
Q Consensus       269 gI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~  314 (365)
                      ||.+|  .. ......+.+...+++++|.++|++|.     |||..
T Consensus        64 Gl~wd--e~-~~~QS~r~~~y~~~~~~Li~~G~AY~-----c~ct~  101 (492)
T 2cfo_A           64 GLTWD--EG-PYFQSDRLDLYRQAIQTLLDKGLAYY-----CYCTP  101 (492)
T ss_dssp             TCCCS--EE-EEEGGGCHHHHHHHHHHHHHTTSEEE-----ECCCH
T ss_pred             CCCCC--CC-CccccCCHHHHHHHHHHHHHCCCceE-----ecCCH
Confidence            99666  41 12334466777899999999999996     56654

>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*

Probab=99.13  E-value=1.4e-10  Score=118.11  Aligned_cols=101  Identities=16%  Similarity=0.150  Sum_probs=82.2

Q ss_pred             EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914         189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF  268 (365)
Q Consensus       189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l  268 (365)
                      +++.++|.|||+|||||+|++++...+||  ...|.-++++-.+|..                .-..++.+.|.++|++|
T Consensus        26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar--~~~G~filRieDtD~~----------------R~~~~~~~~I~~dL~wl   87 (488)
T 3afh_A           26 VRVRFAPSPTGHLHVGGARTALFNWMFAR--KEGGKFILRIEDTDTE----------------RSSREYEQQILESLRWC   87 (488)
T ss_dssp             CEEEECCCCSSSCBHHHHHHHHHHHHHHH--HHTCEEEECBCCCCTT----------------TCCHHHHHHHHHHHHHT
T ss_pred             ceEEECCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEEeeCCcc----------------cccHHHHHHHHHHHHHc
Confidence            78999999999999999999999999999  7899999999888852                22357889999999999


Q ss_pred             CCCccCCCc---------ccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCC
Q psy7914         269 GCKFNWESE---------LATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDN  316 (365)
Q Consensus       269 gI~~D~~~~---------~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~  316 (365)
                      ||.+|  ..         ++.  +.+.+...+++++|.++|++|.     +||...+
T Consensus        88 Gl~wD--e~~~~gG~~gp~~Q--Ser~~~y~~~~~~L~~~G~aY~-----c~ct~ee  135 (488)
T 3afh_A           88 GLDWD--EGPDIGGDFGPYRQ--SERLEIYREYAEKLVEDKRAYY-----VVYDKED  135 (488)
T ss_dssp             TCCCS--BBTTTBCTTCCCBG--GGCHHHHHHHHHHHHHTTSEEE-----EEECSSS
T ss_pred             CCCCC--cCCCCCCCCCCeee--eCCHHHHHHHHHHHHHcCCeEe-----cCCCHHH
Confidence            99776  42         233  3455677899999999999995     3555443

>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}

Probab=99.11  E-value=1.3e-10  Score=119.40  Aligned_cols=99  Identities=18%  Similarity=0.208  Sum_probs=77.8

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG  267 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~  267 (365)
                      .+.+.++|.|||+|||||+|++++...+||  +..|.-++++-.||.                .....++.+.|.++|+|
T Consensus        24 ~vrtRFAPsPtG~LHiG~artAl~n~~~Ar--~~~G~fiLRieDtD~----------------~R~~~~~~~~I~~~L~w   85 (512)
T 4gri_A           24 STRVRYAPSPTGLQHIGGIRTALFNYFFAK--SCGGKFLLRIEDTDQ----------------SRYSPEAENDLYSSLKW   85 (512)
T ss_dssp             CCEEEECCCSSSCCBHHHHHHHHHHHHHHH--HTTCEEEECBCCCCT----------------TSCCHHHHHHHHHHHHH
T ss_pred             ceeEEeCcCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCC----------------CcCCHHHHHHHHHHHHH
Confidence            477899999999999999999999999999  789999999988874                22235788999999999


Q ss_pred             cCCCccCCCc----cc-ccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914         268 FGCKFNWESE----LA-TCDPKYYKWTQALFLDLYHAGLVYR  304 (365)
Q Consensus       268 lgI~~D~~~~----~~-t~d~~~~~~v~~~f~~L~~kG~Iy~  304 (365)
                      ||+.+|-...    +. .....+.+.-.+++++|.++|++|.
T Consensus        86 lGl~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~  127 (512)
T 4gri_A           86 LGISFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYY  127 (512)
T ss_dssp             HTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred             cCCCCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCccc
Confidence            9997761110    00 1223345566789999999999984

>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A

Probab=99.04  E-value=2.6e-10  Score=115.75  Aligned_cols=96  Identities=19%  Similarity=0.270  Sum_probs=77.9

Q ss_pred             EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914         189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF  268 (365)
Q Consensus       189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l  268 (365)
                      +++.++|.|||+|||||+|++++...+||  ...|.-++++-.+|..                .-..++.+.|.++|++|
T Consensus         2 v~~RFaPsPtG~LHiG~~rtal~n~l~Ar--~~~G~filRieDtD~~----------------R~~~~~~~~I~~dl~wl   63 (468)
T 1j09_A            2 VVTRIAPSPTGDPHVGTAYIALFNYAWAR--RNGGRFIVRIEDTDRA----------------RYVPGAEERILAALKWL   63 (468)
T ss_dssp             CEEEECCCCSSSCBHHHHHHHHHHHHHHH--HTTCEEEECBCCCCTT----------------SCCTTHHHHHHHHHHHT
T ss_pred             ceEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCCc----------------ccChHHHHHHHHHHHHc
Confidence            56899999999999999999999999999  7789999999888852                11347789999999999


Q ss_pred             CCCccCCCcc-------cccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914         269 GCKFNWESEL-------ATCDPKYYKWTQALFLDLYHAGLVYR  304 (365)
Q Consensus       269 gI~~D~~~~~-------~t~d~~~~~~v~~~f~~L~~kG~Iy~  304 (365)
                      |+.+|  ...       ....+.+.+...+++.+|.++|++|.
T Consensus        64 Gl~wd--~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~  104 (468)
T 1j09_A           64 GLSYD--EGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYR  104 (468)
T ss_dssp             TCCCS--BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEE
T ss_pred             CCCCC--CCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEE
Confidence            99766  431       12334456677899999999999984

>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A

Probab=99.01  E-value=7.1e-10  Score=113.16  Aligned_cols=94  Identities=21%  Similarity=0.291  Sum_probs=78.5

Q ss_pred             EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914         189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF  268 (365)
Q Consensus       189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l  268 (365)
                      +++.++|.|||+|||||+|++++.-.+||  ...|.-++++-.+|.                .....++.+.|.++|+||
T Consensus         7 vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar--~~gG~fiLRieDtD~----------------~R~~~~~~~~I~~~L~wl   68 (498)
T 2ja2_A            7 VRVRFCPSPTGTPHVGLVRTALFNWAYAR--HTGGTFVFRIEDTDA----------------QRDSEESYLALLDALRWL   68 (498)
T ss_dssp             CEEEECCCSSSSCBHHHHHHHHHHHHHHH--HHTCEEEECBCCCCT----------------TTCCHHHHHHHHHHHHHH
T ss_pred             eeEEECcCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECcCCC----------------cccChHHHHHHHHHHHHc
Confidence            78899999999999999999999999999  789999999988874                222357889999999999


Q ss_pred             CCCccCCC---------cccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914         269 GCKFNWES---------ELATCDPKYYKWTQALFLDLYHAGLVYR  304 (365)
Q Consensus       269 gI~~D~~~---------~~~t~d~~~~~~v~~~f~~L~~kG~Iy~  304 (365)
                      |+.+|  .         .++.  +.+.+...+++.+|.++|++|.
T Consensus        69 Gl~wD--egp~~gG~~~~~~Q--S~r~~~y~~~~~~L~~~g~aY~  109 (498)
T 2ja2_A           69 GLDWD--EGPEVGGPYGPYRQ--SQRAEIYRDVLARLLAAGEAYH  109 (498)
T ss_dssp             TCCCS--BBTTTBCTTCCCBG--GGCHHHHHHHHHHHHHTTSEEE
T ss_pred             CCCcC--CCcCcCCCCCCeee--ecCHHHHHHHHHHHHHcCCeEE
Confidence            99766  4         2333  3456667899999999999983

>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A

Probab=98.11  E-value=1.6e-06  Score=79.43  Aligned_cols=59  Identities=10%  Similarity=0.095  Sum_probs=40.3

Q ss_pred             ccccceEEEEEeCCCCCCC----C-------CCCCCCCcEEEECCCCchhhhccccceEEEecCcccccccccc
Q psy7914          48 GEPNGVRFEFQILPQPEGT----S-------NSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTKE  110 (365)
Q Consensus        48 G~~~g~~~~f~~~~~~~~~----~-------~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a  110 (365)
                      |||+|++|.|++.+....-    .       ........|.||||+|.||++.+    |++++|+|+++.....
T Consensus         1 gkS~G~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vwTTtPwTL~gn~----~iav~pe~~yv~~~~~   70 (219)
T 3o0a_A            1 GRSEGALIRFYVEIEEPEKFLNCVPEELKETLLKEKRIYIDVFTTRPDTVFGAT----FVVLAPEHPLVPVLAC   70 (219)
T ss_dssp             ---CCEEEEEEEECSCGGGTGGGSCHHHHHHHHHHSEEEEEEEESCGGGGGGCC----EEEECTTCTHHHHHHH
T ss_pred             CceeEEEEEEEecCCccccccccccchhhhhcccCCCCEEEEEECCcchhhccc----EEEECCCCcEEEEEec
Confidence            8999999999996421000    0       00000146999999999999999    9999999999877543

>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}

Probab=97.55  E-value=8.6e-05  Score=79.96  Aligned_cols=44  Identities=7%  Similarity=-0.040  Sum_probs=34.6

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCcccccccc
Q psy7914          53 VRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKT  108 (365)
Q Consensus        53 ~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~  108 (365)
                      +.|.|++.+..        .+..|.||||+|+||++.+    ++++.|+|+.+...
T Consensus       210 ~~v~f~~~~~~--------~~~~l~v~TTrP~Tl~g~~----av~v~P~~~y~~~~  253 (810)
T 1wkb_A          210 IIIKFELRENG--------EVIYLPAATLRPETVYGVT----NMWVNPNATYVKAK  253 (810)
T ss_dssp             EEEEEECCSSC--------SCCEEEEEESCGGGGGGCC----EEEECTTSCEEEEE
T ss_pred             EEEEEEccCCC--------CceEEEEEcCCchHhhhhh----EEEECCCCcEEEEE
Confidence            56778774320        0245999999999999999    99999999987654

>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A

Probab=97.30  E-value=0.0002  Score=64.33  Aligned_cols=45  Identities=24%  Similarity=0.378  Sum_probs=38.5

Q ss_pred             ccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCcccccccc
Q psy7914          50 PNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKT  108 (365)
Q Consensus        50 ~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~  108 (365)
                      -.|+.|.|++.+.          +..|.||||+|+||++.+    +++++|+|+++...
T Consensus        10 ~~g~~v~F~~~~~----------~~~l~i~TTrP~TL~g~~----avav~P~~~yv~~~   54 (196)
T 2ajg_A           10 GEGVEITFNVNDY----------DNTLTVYTTRPDTFMGCT----YLAVAAGHPLAQKA   54 (196)
T ss_dssp             -CEEEEEEEBTTC----------SSEEEEEESCGGGGGGCC----EEEECTTSHHHHHH
T ss_pred             CceEEEEEEeCCC----------CcEEEEEECChhhhcCcc----EEEECCCCcEEEEE
Confidence            3699999998542          456999999999999999    99999999987764

>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A

Probab=97.07  E-value=0.0004  Score=61.74  Aligned_cols=53  Identities=13%  Similarity=0.065  Sum_probs=40.8

Q ss_pred             cccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCccccccccc
Q psy7914          49 EPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTK  109 (365)
Q Consensus        49 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~  109 (365)
                      +|.|+.|.|++.+...    ....+..|.||||+|+||++..    +++++|+|+++...+
T Consensus         2 ~S~~i~V~F~~~~~~~----~~~~~~~l~i~TTrP~Tl~g~~----aiav~p~~~y~~~~~   54 (186)
T 1wny_A            2 QDPSVYVRFPLKEPKK----LGLEKASLLIWTTTPWTLPGNV----AAAVHPEYTYAAFQV   54 (186)
T ss_dssp             -CCEEEEEEEBSCGGG----GTCSSEEEEEEESCGGGGGGCC----EEEECTTSEEEEEEE
T ss_pred             ccceEEEEEEeCCCcc----ccCCCcEEEEEECCcchhhcce----EEEECCCCcEEEEEe
Confidence            5899999999864200    0001245999999999999999    999999999988764

>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*

Probab=95.88  E-value=0.0083  Score=51.21  Aligned_cols=36  Identities=8%  Similarity=0.065  Sum_probs=30.9

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCccc
Q psy7914          53 VRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHI  103 (365)
Q Consensus        53 ~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~  103 (365)
                      +.|.|++ +.          +..|.||||+|+||++..    +++++|+|+
T Consensus         7 ~~v~F~~-~~----------~~~l~i~TTrP~Tl~g~~----aiav~P~~~   42 (147)
T 1wka_A            7 YTLRYEV-EG----------GGFIEIATVRPETVFADQ----AIAVHPEDE   42 (147)
T ss_dssp             EEEEEEB-TT----------SCEEEEEESCGGGGGGCC----EEEECTTCT
T ss_pred             EEEEEEC-CC----------CcEEEEEECCceecccce----EEEECCCCc
Confidence            5788888 32          346999999999999999    999999985

>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}

Probab=95.86  E-value=0.0017  Score=52.76  Aligned_cols=43  Identities=2%  Similarity=-0.140  Sum_probs=35.7

Q ss_pred             ECCCCchhhhccccceEEEecCccccccccccccCcceeEEEccchhh
Q psy7914          79 WLPEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKS  126 (365)
Q Consensus        79 ~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~~~gf~n~~i~n~~~~  126 (365)
                      +-++|+.|+...    ...+..+..+.+.+++| ||||||++...++.
T Consensus        54 ~~~~P~~iA~~i----~~~l~~~~~i~~vevag-pGFINf~l~~~~~~   96 (109)
T 3gdz_A           54 LGMAPRQLAEQV----LSHLDLNGIANKVEIAG-PGFINIFLDPAFLA   96 (109)
T ss_dssp             TTSCHHHHHHHH----HHHCCCTTTEEEEEEET-TTEEEEEECHHHHH
T ss_pred             hCCCHHHHHHHH----HHhcCcCCcEeEEEEeC-CCeEEEEECHHHHH
Confidence            346899999887    55566666688899999 99999999999988

>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}

Probab=95.51  E-value=0.028  Score=55.47  Aligned_cols=74  Identities=19%  Similarity=0.153  Sum_probs=41.4

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccC-----CCCCCchHHHHHHHcCCCHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMG-----WDAFGLPAENAAHQHGIDPREWTVGNIATM  261 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g-----~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i  261 (365)
                      ++.|..+ --|||.|||||.++++..   .++++ .|+++.+..+     +++...+.+.        .+..+..+...+
T Consensus        39 p~~vy~G-~~PTG~LHlG~~~~al~~---~~~~q-~g~~~ii~I~D~ha~t~~~~~~~e~--------~~~~~~~~~~~i  105 (394)
T 2dlc_X           39 HLKLYWG-TAPTGRPHCGYFVPMTKL---ADFLK-AGCEVTVLLADLHAFLDNMKAPLEV--------VNYRAKYYELTI  105 (394)
T ss_dssp             CCEEEEE-ECCCSCCBGGGHHHHHHH---HHHHH-TTCEEEEEECHHHHHHTTTSSCTTH--------HHHHHHHHHHHH
T ss_pred             CeEEEEE-eCCCCCccHHHHHHHHHH---HHHHH-cCCcEEEEEcCCccccCCCCCcHHH--------HHHHHHHHHHHH
Confidence            4444433 123899999999887653   33344 6777655543     3321111110        122234455667


Q ss_pred             HHHHHhcCCCcc
Q psy7914         262 KSQLQGFGCKFN  273 (365)
Q Consensus       262 ~~~l~~lgI~~D  273 (365)
                      ...|.++|+..|
T Consensus       106 ~~~l~a~Gldp~  117 (394)
T 2dlc_X          106 KAILRSINVPIE  117 (394)
T ss_dssp             HHHHHHTTCCCT
T ss_pred             HHHHHHcCCChh
Confidence            778899999665

>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*

Probab=94.59  E-value=0.089  Score=51.48  Aligned_cols=68  Identities=18%  Similarity=0.239  Sum_probs=40.3

Q ss_pred             EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccC-----CCCCCchHHHHHHHcCCCHHHH---HHHHHHH
Q psy7914         189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMG-----WDAFGLPAENAAHQHGIDPREW---TVGNIAT  260 (365)
Q Consensus       189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g-----~Dd~G~~I~~~A~~~g~~~~e~---~~~~~~~  260 (365)
                      .|..+.- |||.|||||..+++.   +.++++ .|+++.+..+     +++-            .++.++   +..+.+.
T Consensus        37 ~vy~G~~-PTG~lHlG~~~~~l~---~~~~~q-~g~~~i~~I~D~ha~t~~~------------~~~~~l~~~~~~~~~~   99 (372)
T 1n3l_A           37 KIYWGTA-TTGKPHVAYFVPMSK---IADFLK-AGCEVTILFADLHAYLDNM------------KAPWELLELRVSYYEN   99 (372)
T ss_dssp             EEEEEEC-CSSCCBGGGHHHHHH---HHHHHH-TTCEEEEEECHHHHHHTTT------------TSCHHHHHHHHHHHHH
T ss_pred             EEEeCcC-CCCcccHHHHHHHHH---HHHHHH-CCCCEEEEEcCCceeeCCC------------CCHHHHHHHHHHHHHH
Confidence            4444432 789999999988766   444444 6887665544     3221            122332   3344444


Q ss_pred             -HHHHHHhcCCCcc
Q psy7914         261 -MKSQLQGFGCKFN  273 (365)
Q Consensus       261 -i~~~l~~lgI~~D  273 (365)
                       +...|.++|+..+
T Consensus       100 ~i~~~lla~Gldp~  113 (372)
T 1n3l_A          100 VIKAMLESIGVPLE  113 (372)
T ss_dssp             HHHHHHHHHTCCCT
T ss_pred             HHHHHHHHcCCChh
Confidence             6666788999765

>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*

Probab=94.59  E-value=0.03  Score=53.80  Aligned_cols=65  Identities=15%  Similarity=0.195  Sum_probs=41.4

Q ss_pred             CCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914         196 YPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN  273 (365)
Q Consensus       196 npnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D  273 (365)
                      -|||.|||||..+++..  +.++.+  |+++.+..+ |.|+.-       ...++.++ .++...+..++.++|+..+
T Consensus        11 ~PTg~lHlG~~lg~l~~--~~~lQ~--g~~~~~~ia-D~ha~~-------~~~~~~~l-~~~~~~~~~~~lA~Gldp~   75 (322)
T 3tzl_A           11 QPSGDLHIGNYFGAIKQ--MVDAQE--KSQMFMFIA-NYHAMT-------SSQDGEKL-KQNSLKAAAAFLSLGIDPQ   75 (322)
T ss_dssp             CCSSCCBHHHHHHTHHH--HHHTTT--TSCCEEEEC-HHHHTT-------TCCCHHHH-HHHHHHHHHHHHHTTCCTT
T ss_pred             CCCccccHHHHHHHHHH--HHHHhc--CCCEEEEEe-cCeeec-------CCCCHHHH-HHHHHHHHHHHHHcCCCcc
Confidence            47899999999886544  445443  998877655 444331       11244443 4455567778888998765

>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}

Probab=94.45  E-value=0.17  Score=48.40  Aligned_cols=73  Identities=15%  Similarity=0.117  Sum_probs=42.2

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG  267 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~  267 (365)
                      ..|..+. -|||+|||||+ +++.  .+.++ ...|+++.+..+=. |+.    .  ....++++ +..+...+.++|.+
T Consensus        33 ~~vy~G~-~PTg~lHlG~l-~~l~--~~~~l-q~~g~~~~~~i~D~-~a~----~--~d~~~~~~-i~~~~~~~~~~~~a   99 (323)
T 2cyb_A           33 PRAYVGY-EPSGEIHLGHM-MTVQ--KLMDL-QEAGFEIIVLLADI-HAY----L--NEKGTFEE-IAEVADYNKKVFIA   99 (323)
T ss_dssp             CEEEEEE-CCCSCCBHHHH-HHHH--HHHHH-HHTTCEEEEEECHH-HHH----H--TTCCCHHH-HHHHHHHHHHHHHH
T ss_pred             CEEEECc-CCCCcchHHHH-HHHH--HHHHH-HHCCCcEEEEECCc-eeE----c--CCCCCHHH-HHHHHHHHHHHHHH
Confidence            3444442 47899999996 4433  33333 34588876654321 111    0  00114443 46677888889999


Q ss_pred             cCCCcc
Q psy7914         268 FGCKFN  273 (365)
Q Consensus       268 lgI~~D  273 (365)
                      +|+..|
T Consensus       100 ~Gldp~  105 (323)
T 2cyb_A          100 LGLDES  105 (323)
T ss_dssp             TTCCTT
T ss_pred             hCCCcc
Confidence            999665

>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}

Probab=93.66  E-value=0.035  Score=51.53  Aligned_cols=32  Identities=6%  Similarity=-0.288  Sum_probs=28.8

Q ss_pred             CcEEEECCCCchhhhccccceEEEecCccccccccc
Q psy7914          74 DTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTK  109 (365)
Q Consensus        74 ~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~  109 (365)
                      ..|.||||+|+||++.+    +++++|+|+++....
T Consensus        30 ~~l~v~TTrP~TL~g~t----alav~Pe~~yv~~~~   61 (252)
T 2wfd_A           30 IFLVAATLRPETMFGQT----NCWVRPDMKYIGFET   61 (252)
T ss_dssp             EEEEEEESCGGGGGGCC----EEEECSSSCCEEEEC
T ss_pred             CEEEEEECChHHHhhhh----eEEECCCCcEEEEEe
Confidence            35999999999999999    999999999987654

>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*

Probab=93.35  E-value=0.04  Score=51.38  Aligned_cols=32  Identities=6%  Similarity=-0.298  Sum_probs=29.0

Q ss_pred             CcEEEECCCCchhhhccccceEEEecCccccccccc
Q psy7914          74 DTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTK  109 (365)
Q Consensus        74 ~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~  109 (365)
                      ..|.||||+|+||++.+    +++++|+|+++...+
T Consensus        33 ~~l~v~TTrP~TL~g~t----alav~Pe~~yv~v~~   64 (261)
T 2wfg_A           33 VYLVAATLRPETMYGQT----CCFVSPKIDYGVFDA   64 (261)
T ss_dssp             EEEEEEESCGGGGGGCC----EEEECTTCEEEEEEC
T ss_pred             CEEEEEECCchHHhhhh----eEEECCCCceEEEEe
Confidence            35999999999999999    999999999987654

>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A

Probab=93.17  E-value=0.096  Score=50.38  Aligned_cols=65  Identities=18%  Similarity=0.215  Sum_probs=40.3

Q ss_pred             CCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914         196 YPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN  273 (365)
Q Consensus       196 npnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D  273 (365)
                      -|||.|||||..+++..  +.++  ..|+++.+..+ |.|+.-.       ..+++++ .++...+.++|.++|+..+
T Consensus         9 ~PTG~lHlGn~vg~l~~--~~~l--Q~g~~~~~~Ia-D~ha~~~-------~~~~e~i-~~~~~~~~~~~la~Gldp~   73 (328)
T 1i6k_A            9 QPSGVITIGNYIGALRQ--FVEL--QHEYNCYFCIV-DQHAITV-------WQDPHEL-RQNIRRLAALYLAVGIDPT   73 (328)
T ss_dssp             CCCSCCBHHHHHHTHHH--HHHH--TTTSEEEEEEC-HHHHTTS-------CCCHHHH-HHHHHHHHHHHHHTTCCTT
T ss_pred             CCCCcccHHHHHHHHHH--HHHH--HcCCcEEEEEe-CceeecC-------CCCHHHH-HHHHHHHHHHHHHhCCChh
Confidence            36799999999887632  2232  33888866544 3222210       1344433 4555678889999999765

>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}

Probab=92.69  E-value=0.15  Score=49.12  Aligned_cols=68  Identities=16%  Similarity=0.105  Sum_probs=39.1

Q ss_pred             CCCCCCchHHHHHHHHhhHHHHHHHHCC-CcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914         196 YPSGSLHMGHVRVYTISDTLARYYAMNG-KNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN  273 (365)
Q Consensus       196 npnG~LHiGHar~~v~~DvlaR~lr~~G-~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D  273 (365)
                      -|||+|||||..+++.  -+.++.+ .| ++|.+..+ |.|+.-..     .+.++.+ ..++...+..++.++|+..+
T Consensus         9 ~PTg~lHlGh~~g~l~--~~~~lQ~-~G~~~~~~~Ia-D~~a~~~~-----~~~~~~~-i~~~~~~~~~~~la~Gldp~   77 (337)
T 2el7_A            9 QPSGEIHIGNYLGAIK--QWVAIGE-KLGRDAFFCIV-DYHALTNP-----LAYDPST-LAQRTFEAALVNIAAGLDPE   77 (337)
T ss_dssp             CSCSCCBHHHHHTHHH--HHHHHHH-HHGGGEEEEEC-GGGGGGST-----TTSCHHH-HHHHHHHHHHHHHHHTCCTT
T ss_pred             CCCCcccHHHHHHHHH--HHHHHHh-cCCCCEEEEEe-CceeecCC-----CCCCHHH-HHHHHHHHHHHHHHhCCChh
Confidence            3679999999987752  2334433 46 88765544 22333110     0133433 34555566778888998665

>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}

Probab=92.59  E-value=0.16  Score=49.11  Aligned_cols=67  Identities=19%  Similarity=0.194  Sum_probs=40.0

Q ss_pred             CCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914         196 YPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN  273 (365)
Q Consensus       196 npnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D  273 (365)
                      -|||.|||||..+++.  -+. .+...|++|.+.. .|.|+.-      ....+|.+. .+......+++.++|+..+
T Consensus        20 ~PTG~lHLGn~~g~l~--~~~-~lQ~~G~~~~~~I-aD~ha~t------~~~~dp~~~-~~~~~~~~~~~lA~Gldp~   86 (340)
T 2g36_A           20 RPTGKLHIGHLVGALE--NWV-KLQEEGNECFYFV-ADWHALT------THYDDVSKL-KEYTRDLVRGFLACGIDPE   86 (340)
T ss_dssp             CCCSSCBHHHHHTHHH--HHH-HHHHTTCEEEEEE-CHHHHHH------HHTTCCTTH-HHHHHHHHHHHHHTTCCTT
T ss_pred             CCCCcccHHhHHHHHH--HHH-HHHHCCCCEEEEE-ecceeec------CCCCCHHHH-HHHHHHHHHHHHHhCCChh
Confidence            3678999999988653  233 3345689988775 2322221      012344443 3444555667888999665

>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*

Probab=92.02  E-value=0.51  Score=46.08  Aligned_cols=75  Identities=25%  Similarity=0.328  Sum_probs=45.4

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      ++.|.++. -|||+|||||..++.    -.+++...|++|.+... |.|..      .-......+...........++-
T Consensus        70 ~~~v~sG~-~PTG~lHLGhyv~~~----~~~~lq~~~~~~~~~Ia-D~ha~------t~~~~~~~e~~r~~~~~~~~~~l  137 (372)
T 3a04_A           70 RVAVLTGF-MPSGKFHFGHKLTVD----QLIYLQKNGFKVFVAIA-DAEAF------AVRRIGREEAVRIAVEEYIANMI  137 (372)
T ss_dssp             CCEEEEEE-CCCSCCBHHHHHHHH----HHHHHHHTTCEEEEEEC-HHHHH------HTTCCCHHHHHHHHHHTTHHHHH
T ss_pred             CCEEEeCc-CCCcHhHHHHHHHHH----HHHHHHhCCCeEEEEEe-cchhh------ccCCCCCHHHHHHHHHHHHHHHH
Confidence            56777662 468999999987543    24455557999876543 33221      11122333434455556667778


Q ss_pred             hcCCCcc
Q psy7914         267 GFGCKFN  273 (365)
Q Consensus       267 ~lgI~~D  273 (365)
                      ++|+..+
T Consensus       138 A~GlDP~  144 (372)
T 3a04_A          138 ALGLDPK  144 (372)
T ss_dssp             HHTCCTT
T ss_pred             HcCCChH
Confidence            8898766

>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}

Probab=91.75  E-value=0.27  Score=48.44  Aligned_cols=75  Identities=15%  Similarity=0.243  Sum_probs=45.1

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHH-CCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAM-NGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL  265 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~-~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l  265 (365)
                      ++.|..+. -|||.|||||..+++.    .|++.. .|++|.+..+ |.|+.-     .....++.+. .++...+.+++
T Consensus        73 p~~i~sG~-~PTG~lHLGh~v~~~~----~~~lQ~~~g~~~~i~Ia-D~ha~~-----~~~~~~~e~i-~~~~~~~~~~~  140 (392)
T 3jxe_A           73 GFFLYTGR-GPSGPMHIGHIIPFFA----TKWLQEKFGVNLYIQIT-DDEKFL-----FKENLTFDDT-KRWAYDNILDI  140 (392)
T ss_dssp             CCEEEEEE-CCSSCCBHHHHHHHHH----HHHHHHHHCCEEEEEEC-HHHHHH-----HCSSCCHHHH-HHHHHHHHHHH
T ss_pred             CeEEEecc-CCCCchhHHHHHHHHH----HHHHHHhcCCceEEEec-chHHhh-----cCCCCCHHHH-HHHHHHHHHHH
Confidence            45555552 2569999999887752    233433 6888887766 433210     0113555544 44455677788


Q ss_pred             HhcCCCcc
Q psy7914         266 QGFGCKFN  273 (365)
Q Consensus       266 ~~lgI~~D  273 (365)
                      .++|+..+
T Consensus       141 lA~GlDp~  148 (392)
T 3jxe_A          141 IAVGFDPD  148 (392)
T ss_dssp             HTTCCCTT
T ss_pred             HHhCcCcc
Confidence            88999765

>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*

Probab=91.58  E-value=0.34  Score=46.16  Aligned_cols=71  Identities=14%  Similarity=0.028  Sum_probs=40.8

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG  267 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~  267 (365)
                      +.|..+ --|||+||||| .+.+.  .+.++ ...|+++.+..+=+ |+.-    .  ...+++ -+.++...+.+++.+
T Consensus        29 ~~vy~G-~~PTg~lHlGh-l~~l~--~~~~l-Q~~g~~~~~~i~D~-~a~~----~--~~~~~e-~i~~~~~~~~~~~~a   95 (314)
T 2zp1_A           29 KSAYIG-FEPSGKIHLGH-YLQIK--KMIDL-QNAGFDIIILLADL-AAYL----N--QKGELD-EIRKIGDYNKKVFEA   95 (314)
T ss_dssp             EEEEEE-ECCCSSCBHHH-HHHHH--HHHHH-HHTTEEEEEEECHH-HHHH----T--TCCCHH-HHHHHHHHHHHHHHH
T ss_pred             CEEEEc-cCCCCCcchhh-HHHHH--HHHHH-HHCCCCEEEEEecc-eEec----C--CCCCHH-HHHHHHHHHHHHHHh
Confidence            444433 22479999999 66543  23333 34588877765422 1110    0  011333 345566889999999


Q ss_pred             cCCC
Q psy7914         268 FGCK  271 (365)
Q Consensus       268 lgI~  271 (365)
                      +|+.
T Consensus        96 ~G~d   99 (314)
T 2zp1_A           96 MGLK   99 (314)
T ss_dssp             TTCC
T ss_pred             cCCC
Confidence            9985

>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}

Probab=91.34  E-value=0.2  Score=48.82  Aligned_cols=75  Identities=13%  Similarity=0.078  Sum_probs=42.7

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG  267 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~  267 (365)
                      ..+..+ --|||+||||| .+.+.  .+.++ ...|+++.+..+ |.|+.-    ....|.+++++ ..+...+.+++.+
T Consensus        36 ~~iy~G-~~PTg~lHlG~-l~~l~--~~~~l-Q~~G~~~~~~ia-D~~a~~----~~ps~~~~e~i-~~~~~~~~~~~la  104 (364)
T 2cya_A           36 IKGYIG-YEPSGVAHIGW-LVWMY--KVKDL-VEAGVDFSVLEA-TWHAYI----NDKLGGDMDLI-RAAARIVRRVMEA  104 (364)
T ss_dssp             CEEEEE-ECCCSSCBTHH-HHHHH--HHHHH-HHTTCEEEEEEC-HHHHHH----TTGGGGCHHHH-HHHHHHHHHHHHH
T ss_pred             CEEEec-cCCCCCccHhH-HHHHH--HHHHH-HHCCCCEEEEEe-Ccchhh----CCCCCCCHHHH-HHHHHHHHHHHHH
Confidence            344433 24579999999 65543  23333 345888877755 222221    01112344444 3445677889999


Q ss_pred             cCCCcc
Q psy7914         268 FGCKFN  273 (365)
Q Consensus       268 lgI~~D  273 (365)
                      +|+..+
T Consensus       105 ~G~dp~  110 (364)
T 2cya_A          105 AGVPVE  110 (364)
T ss_dssp             TTCCGG
T ss_pred             hCCCcc
Confidence            999765

>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}

Probab=90.52  E-value=0.27  Score=47.50  Aligned_cols=65  Identities=14%  Similarity=0.075  Sum_probs=40.8

Q ss_pred             CCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914         196 YPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN  273 (365)
Q Consensus       196 npnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D  273 (365)
                      -|||+|||||..+++-  -+.++..  ++++.+..+ |.|..-       ...++.++ .++...+..++.++|+..+
T Consensus        14 ~PTG~lHLGhy~g~l~--~~~~lQ~--~~~~~~~ia-D~ha~~-------~~~~~~~~-~~~~~~~~~~~lA~GlDp~   78 (341)
T 3sz3_A           14 QPSGELSIGNYLGALR--QWQQMQD--DYDCQYCVV-DLHAIT-------VRQDPQAL-HEATLDALAICLAVGVDPK   78 (341)
T ss_dssp             CSSSCCBHHHHHHTGG--GHHHHHH--HSEEEEEEC-HHHHTT-------SCCCHHHH-HHHHHHHHHHHHHTTCCTT
T ss_pred             CCCCcccHHHHHHHHH--HHHHHHh--cCeEEEEEe-cceeEc-------CCCCHHHH-HHHHHHHHHHHHHcCCChh
Confidence            4789999999988762  2334443  577766543 433321       12455443 4555677788888999776

>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}

Probab=89.45  E-value=0.34  Score=47.67  Aligned_cols=70  Identities=19%  Similarity=0.172  Sum_probs=43.0

Q ss_pred             EEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcC
Q psy7914         190 VLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG  269 (365)
Q Consensus       190 I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lg  269 (365)
                      |..+ --|||+|||||..+++..  +.++  ..|++|.+..+ |.|..-       ...++.++ .++...+..++.+.|
T Consensus        38 i~sG-~~PTG~lHLGhyvGal~~--~~~L--Q~~~~~~~~Ia-D~hAlt-------~~~~~~~l-r~~~~~~aa~~lA~G  103 (388)
T 3prh_A           38 IFSG-IQPSGSVTLGNYIGAMKQ--FVEL--QHDYNSYFCIV-DQHAIT-------VPQDRLEL-RKNIRNLAALYLAVG  103 (388)
T ss_dssp             EEEE-ECCCSCCBHHHHHHTHHH--HHHT--TTTSEEEEEEC-HHHHTT-------SCCCHHHH-HHHHHHHHHHHHHTT
T ss_pred             EEEe-eCCCCcchHHHHHHHHHH--HHHH--HccCcEEEEEe-cceeee-------cCCCHHHH-HHHHHHHHHHHHHhC
Confidence            4433 357899999999887642  1222  24898876653 443321       13455544 444556778888899


Q ss_pred             CCcc
Q psy7914         270 CKFN  273 (365)
Q Consensus       270 I~~D  273 (365)
                      +..+
T Consensus       104 lDp~  107 (388)
T 3prh_A          104 LDPE  107 (388)
T ss_dssp             CCTT
T ss_pred             CChh
Confidence            9776

>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1

Probab=88.12  E-value=0.57  Score=45.34  Aligned_cols=65  Identities=14%  Similarity=0.101  Sum_probs=39.0

Q ss_pred             CCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914         196 YPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN  273 (365)
Q Consensus       196 npnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D  273 (365)
                      -|||+|||||..+++-.  +.++  ..++++.+..+ |.|..-       ...+|.++ .++...+.+++.++|+..+
T Consensus        23 ~PTG~lHLGh~vg~l~~--~~~l--Q~~~~~~~~ia-D~hA~t-------~~~~~~~~-~~~~~~~~~~~lA~GlDp~   87 (346)
T 3n9i_A           23 QPSGELTIGNYMGALRQ--WVQM--QDDYDCIYCIV-DLHAIT-------ARQDPALL-RKRTLDTLALYLACGIDPK   87 (346)
T ss_dssp             CSCSCCBHHHHHHTHHH--HHTT--TTTSEEEEEEC-HHHHTT-------SCCCHHHH-HHHHHHHHHHHHHHTCCTT
T ss_pred             CCCCcccHHHHHHHHHH--HHHH--HhhCcEEEEEe-cceeec-------CCCCHHHH-HHHHHHHHHHHHHcCCCcc
Confidence            46799999998877521  1222  24677765543 443321       12455443 4455567778888999776

>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*

Probab=87.82  E-value=0.43  Score=46.28  Aligned_cols=65  Identities=22%  Similarity=0.286  Sum_probs=37.7

Q ss_pred             CCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914         197 PSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN  273 (365)
Q Consensus       197 pnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D  273 (365)
                      |||+|||||..+++.  -+.++.  ..+++.+.. .|.|+.-.      ...+++++ .++...+.+++.++|+..+
T Consensus        31 PTG~lHLGn~~g~l~--~~~~lQ--~~~~~~~~I-aD~ha~~~------~~~~~e~i-~~~~~~~~~~~la~Gldp~   95 (351)
T 1yi8_B           31 PTGALHLGHLAGSLQ--NRVRLQ--DEAELFVLL-ADVQALTD------HFDRPEQV-RENVLAVALDYLAAGLDPQ   95 (351)
T ss_dssp             CSSCCBHHHHHHTHH--HHHHHT--SSSEEEEEE-CHHHHHHH------HTTCHHHH-HHHHHHHHHHHHHHTCCTT
T ss_pred             CCCCccHHHHHHHHH--HHHHHH--HhCCeEEEE-ecchhhcC------CCCCHHHH-HHHHHHHHHHHHHhCCChh
Confidence            479999999988652  222222  236765543 33333211      13555544 4445567778889999655

>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}

Probab=87.58  E-value=0.55  Score=45.90  Aligned_cols=70  Identities=16%  Similarity=0.121  Sum_probs=37.0

Q ss_pred             CCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914         195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN  273 (365)
Q Consensus       195 PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D  273 (365)
                      --|||.|||||  +.+..-.+.++ ...|++|.+..+ |-|+.-    ....+.++.++ ..+...+.+.+.++|+..+
T Consensus        63 ~~PTg~lHlG~--gvl~~~~~~~l-Q~~G~~~~~lIa-D~ha~i----~d~~~~~~~~i-~~~~~~~~~~~~a~G~dp~  132 (373)
T 3vgj_A           63 FEPSGRMHIAQ--GLLKSIIVNKL-TSNGCTFIFWIA-DWFAHL----NNKMSGDLKKI-KKVGSYFIEVWKSCGMNME  132 (373)
T ss_dssp             ECCCSSCBHHH--HHHHHHHHHHH-HTTTCEEEEEEC-HHHHHH----TTGGGGCHHHH-HHHHHHHHHHHHHTTCCST
T ss_pred             CCCCCCceehh--hHHHHHHHHHH-HHCCCcEEEEEe-cceeEe----cCCCCCCHHHH-HHHHHHHHHHHHHcCCChh
Confidence            34678999999  32222224444 345998877765 333320    00112333332 3334445667777887554

>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}

Probab=87.40  E-value=1.7  Score=42.60  Aligned_cols=75  Identities=9%  Similarity=0.052  Sum_probs=42.7

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      ++.|..+ --|||+|||||..++.   .+.++.+..|..|....+-+ +      +......+++++. ++...+.+++-
T Consensus        82 ~~~vysG-~~PTG~lHLGh~v~~~---~~~~lQ~~~g~~v~i~I~D~-~------a~~~r~~~~e~i~-~~~~~~~~~~l  149 (386)
T 3hzr_A           82 PTFIFIQ-KYPQKEVALEEYITLE---FARYLQDAFNIQVIIQILDD-I------KVLNREATINEAS-KMSNDLMKYIL  149 (386)
T ss_dssp             CEEEEEE-ECCCSSCBGGGHHHHH---HHHHHHHHHCCEEEEEECHH-H------HHHTTSCCHHHHH-HHHHHHHHHHH
T ss_pred             CeEEEec-cCCCCCccHHHHHHHH---HHHHHHHhcCCeEEEEeCch-H------HhhcCCCCHHHHH-HHHHHHHHHHH
Confidence            4444444 4578999999977652   23334444577777762221 1      1111225655554 34446667788


Q ss_pred             hcCCCcc
Q psy7914         267 GFGCKFN  273 (365)
Q Consensus       267 ~lgI~~D  273 (365)
                      ++|+..+
T Consensus       150 A~GlDp~  156 (386)
T 3hzr_A          150 AFGFNED  156 (386)
T ss_dssp             HTCCCGG
T ss_pred             HcCCCCc
Confidence            8888665

>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}

Probab=87.14  E-value=0.92  Score=43.85  Aligned_cols=64  Identities=19%  Similarity=0.200  Sum_probs=38.7

Q ss_pred             CCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914         197 PSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN  273 (365)
Q Consensus       197 pnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D  273 (365)
                      |||.|||||..+++..  +.++..  |+++.+..+ |.|+.-       ...+|+++ .++...+.+++.++|+..+
T Consensus        13 PTG~lHLGn~vg~l~~--~~~lQ~--~~~~~~~Ia-D~ha~~-------~~~d~~~i-~~~~~~~~~~~lA~Gldp~   76 (348)
T 2yy5_A           13 ASGKQHLGNYLGVMQS--LIELQE--QCQLFVFVA-DLHSIT-------VDFQPQAL-KQNNFDLVRTLLAVGLDPQ   76 (348)
T ss_dssp             CCTTCBHHHHHHTGGG--HHHHHH--HSEEEEEEC-HHHHTT-------SCCCHHHH-HHHHHHHHHHHHHTTCCTT
T ss_pred             CCCcccHHHHHHHHHH--HHHHHh--CCcEEEEEc-Chhhcc-------CCCCHHHH-HHHHHHHHHHHHHhCCChh
Confidence            6699999999987632  223333  787765543 222221       01445444 3455667778888999766

>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}

Probab=86.51  E-value=0.64  Score=50.90  Aligned_cols=46  Identities=7%  Similarity=-0.080  Sum_probs=36.0

Q ss_pred             ceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCccccccccc
Q psy7914          52 GVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTK  109 (365)
Q Consensus        52 g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~  109 (365)
                      .+.|.|++.+..        .+..|.||||+|+|+++.+    ++++.|+|+.+...+
T Consensus       209 ~~~v~f~~~~~~--------~~~~l~i~TTrPeTl~g~~----avav~P~~~Y~~~~~  254 (967)
T 1wz2_A          209 YIIIKFELRENG--------EVIYLPAATLRPETVYGVT----NMWVNPNATYVKAKV  254 (967)
T ss_dssp             CEEEEEECCCSS--------SCCEEEEEESCGGGGGGCC----EEEECSSSCEEEEEE
T ss_pred             eEEEEEEecCCC--------CceEEEEEcCCchHhhhhe----EEEECCCCcEEEEEe
Confidence            367888875420        0245999999999999999    999999998876543

>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}

Probab=86.36  E-value=1.1  Score=43.81  Aligned_cols=70  Identities=14%  Similarity=0.033  Sum_probs=38.8

Q ss_pred             CCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHH----HHHHHHHHHHHHhcCCC
Q psy7914         196 YPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWT----VGNIATMKSQLQGFGCK  271 (365)
Q Consensus       196 npnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~----~~~~~~i~~~l~~lgI~  271 (365)
                      -|||.|||||....+.  .+.++. ..|+++.+..+=. |+.    .....|.+++++.    ..+...+.+++.++|+.
T Consensus        41 ~PTg~lHlG~yl~~l~--~~~~lQ-~~G~~~~~~iaD~-ha~----~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~d  112 (375)
T 2cyc_A           41 EISGYIHLGTGLMAGA--KIADFQ-KAGIKTRVFLADW-HSW----INDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGD  112 (375)
T ss_dssp             CCCSCCBHHHHHHHHH--HHHHHH-HTTCBCEEEECHH-HHH----HTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTCC
T ss_pred             CCCCCcCchHHHHHHH--HHHHHH-HCCCcEEEEecCc-EEE----cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4678999999666443  234444 4588877765422 111    1111233444333    33334444889999997


Q ss_pred             cc
Q psy7914         272 FN  273 (365)
Q Consensus       272 ~D  273 (365)
                      .+
T Consensus       113 p~  114 (375)
T 2cyc_A          113 PK  114 (375)
T ss_dssp             GG
T ss_pred             cc
Confidence            65

>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0

Probab=86.16  E-value=1.9  Score=42.30  Aligned_cols=75  Identities=16%  Similarity=0.115  Sum_probs=43.5

Q ss_pred             ceEEEecCCCCC-CCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc-CCCHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPS-GSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH-GIDPREWTVGNIATMKSQ  264 (365)
Q Consensus       187 ~~~I~~~~Pnpn-G~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~-g~~~~e~~~~~~~~i~~~  264 (365)
                      ++.+..+ --|| |.|||||..+++   .+.++++.-|..|....| |.      .+.... ..+++++ .++...+.++
T Consensus        74 ~~~vy~G-~~PTa~~lHlGh~v~~~---~~~~lQ~~~~~~v~i~I~-D~------~~~~~r~~~~~e~i-~~~~~~~~~~  141 (393)
T 3hv0_A           74 LFYLYTG-RGPSSESLHVGHLVPFL---FTKYLQDTFKVPLVIQLT-DD------EKFIFKSNLTLEET-HNYAYENMKD  141 (393)
T ss_dssp             CCEEEEE-ECCSSSSCBSTTHHHHH---HHHHHHHHHCCCEEEEEC-HH------HHHHHCTTCCHHHH-HHHHHHHHHH
T ss_pred             CeEEEeC-CCCCCCCccHHHHHHHH---HHHHHHHhcCCCeEeecc-Ch------HHHhhccCCCHHHH-HHHHHHHHHH
Confidence            3444444 3477 689999966654   344555655777666322 21      122223 5565544 4455567788


Q ss_pred             HHhcCCCcc
Q psy7914         265 LQGFGCKFN  273 (365)
Q Consensus       265 l~~lgI~~D  273 (365)
                      +.++|+..+
T Consensus       142 ~lA~GlDp~  150 (393)
T 3hv0_A          142 IIACGFDPE  150 (393)
T ss_dssp             HHTTCCCTT
T ss_pred             HHHcCCCCc
Confidence            888898655

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*

Probab=85.34  E-value=1.6  Score=46.06  Aligned_cols=71  Identities=14%  Similarity=0.063  Sum_probs=40.1

Q ss_pred             CCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914         194 FPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN  273 (365)
Q Consensus       194 ~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D  273 (365)
                      .--|||.|||||  +.+..-.+.+++ ..|++|.+..+ |-|+.-.    ...+.+++++ ..+...+.+++.++|+..+
T Consensus        46 G~~PTg~lHLG~--~v~~~~~~~~lQ-~~G~~~~~lIa-D~ha~~~----d~~~~~~e~i-~~~~~~~~~~~lA~GlDp~  116 (690)
T 3p0j_A           46 GFEPSGRMHIAQ--GIFKAVNVNKCT-AAGCEFVFWVA-DWFALMN----DKVGGELEKI-RIVGRYLIEVWKAAGMDMD  116 (690)
T ss_dssp             EECCCSCCBHHH--HHHHHHHHHHHH-HTTEEEEEEEC-CGGGGGG----CTTTTHHHHH-HHHHHHHHHHHHHTTCCGG
T ss_pred             eecCCCcchhHh--hHHHHHHHHHHH-HCCCcEEEEEe-eeEEEec----CCCcchHHHH-HHHHHHHHHHHHHcCCChH
Confidence            335788999999  222222244444 46998877766 4454311    0122333333 3444566778888898655

>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*

Probab=84.72  E-value=0.93  Score=44.96  Aligned_cols=74  Identities=22%  Similarity=0.301  Sum_probs=40.3

Q ss_pred             cCCCCCCC-CchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCC--CCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcC
Q psy7914         193 MFPYPSGS-LHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDA--FGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG  269 (365)
Q Consensus       193 ~~PnpnG~-LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd--~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lg  269 (365)
                      .---|||+ |||||...   --.+.++. ..|+++.+..|=.+  .|.|--....+.-++++++ .++...+++++.++ 
T Consensus        37 ~G~dPTg~sLHlGh~v~---l~~~~~lQ-~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i-~~n~~~~~~~~~~~-  110 (420)
T 1jil_A           37 CGADPTADSLHIGHLLP---FLTLRRFQ-EHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQV-DKNIEGISKQMHNI-  110 (420)
T ss_dssp             EEECCSSSSCBHHHHHH---HHHHHHHH-HTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHH-HHHHHHHHHHHHHH-
T ss_pred             EeeCCCCCCccHHHHHH---HHHHHHHH-HCCCcEEEEEcCceeEecCCCccccccccCCHHHH-HHHHHHHHHHHHHH-
Confidence            33457899 99999663   22344444 46999887765332  1222111111112344444 45667777777777 


Q ss_pred             CCc
Q psy7914         270 CKF  272 (365)
Q Consensus       270 I~~  272 (365)
                      +.+
T Consensus       111 ld~  113 (420)
T 1jil_A          111 FEF  113 (420)
T ss_dssp             SCC
T ss_pred             hCC
Confidence            544

>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*

Probab=82.70  E-value=3.3  Score=41.18  Aligned_cols=76  Identities=13%  Similarity=0.195  Sum_probs=42.7

Q ss_pred             ceEEEecCCCCC-CCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPS-GSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL  265 (365)
Q Consensus       187 ~~~I~~~~Pnpn-G~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l  265 (365)
                      ++.|..+ --|| |.|||||..+++.   +.++....|+.+.+..| |.++.-     .....++.+ +.++...+.+++
T Consensus       102 ~~~vy~G-~dPTag~LHLGh~v~~~~---l~~lQ~~~g~~~i~lI~-D~ta~l-----~~~~~t~e~-i~~~~~~~~~~~  170 (432)
T 2ip1_A          102 PFFLYTG-RGPSSDSMHLGHMIPFVF---TKWLQEVFDVPLVIELT-DDEKFL-----FKHKLTIND-VKNFARENAKDI  170 (432)
T ss_dssp             CCEEEEE-ECCCSSCCBGGGHHHHHH---HHHHHHHHTCCEEEEEC-HHHHHH-----HCTTCCHHH-HHHHHHHHHHHH
T ss_pred             CeEEEEe-ecCCCCCccHHHHHHHHH---HHHHHHHcCCeEEEEEe-ccccee-----CCCCCCHHH-HHHHHHHHHHHH
Confidence            3444444 3467 8999999887652   33444436888777766 322210     001245443 344445556677


Q ss_pred             HhcCCCcc
Q psy7914         266 QGFGCKFN  273 (365)
Q Consensus       266 ~~lgI~~D  273 (365)
                      .++|+..+
T Consensus       171 lA~GlDp~  178 (432)
T 2ip1_A          171 IAVGFDPK  178 (432)
T ss_dssp             HTTTCCGG
T ss_pred             HHhCCCCC
Confidence            78888654

>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}

Probab=82.47  E-value=2.2  Score=41.13  Aligned_cols=76  Identities=12%  Similarity=0.059  Sum_probs=41.8

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG  267 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~  267 (365)
                      ..+..+ --|||.|||||....+  -.+.++. ..|+++.+..+=. |+.    .....+.++++ +.++...+.+++.+
T Consensus        41 ~~vy~G-~~PTg~lHlGhyl~~l--~~~~~lQ-~~G~~~~~~i~D~-~a~----~~~~~~~~~e~-i~~~~~~~~~~~la  110 (348)
T 2j5b_A           41 FTAYNG-FEPSGRIHIAQALITV--MNTNNMI-ECGGQMIIYIADW-FAK----MNLKMNGDINK-IRELGRYFIEVFKA  110 (348)
T ss_dssp             EEEEEE-ECCCSSCBHHHHHHHH--HHHHHHH-HTTEEEEEEECHH-HHH----HTTGGGGCHHH-HHHHHHHHHHHHHH
T ss_pred             CEEEec-cCCCCCCchhHHHHHH--HHHHHHH-HcCCcEEEEeccc-hhh----hCCCCCCCHHH-HHHHHHHHHHHHHH
Confidence            444433 2456999999944433  2344444 3588877765422 221    00111234433 34555677778888


Q ss_pred             cCCCcc
Q psy7914         268 FGCKFN  273 (365)
Q Consensus       268 lgI~~D  273 (365)
                      +|+..+
T Consensus       111 ~Gldp~  116 (348)
T 2j5b_A          111 CGINLD  116 (348)
T ss_dssp             TTCCGG
T ss_pred             hcCCcc
Confidence            898765

>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A

Probab=82.30  E-value=1.3  Score=43.47  Aligned_cols=34  Identities=29%  Similarity=0.430  Sum_probs=22.8

Q ss_pred             CCCCCCC-CchHHHHHHHHhhHHHHHHHHCCCcEEeccC
Q psy7914         194 FPYPSGS-LHMGHVRVYTISDTLARYYAMNGKNVFQPMG  231 (365)
Q Consensus       194 ~PnpnG~-LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g  231 (365)
                      ---|||+ |||||... +  -.+.++.+ .|+++.+..|
T Consensus        70 G~dPTg~sLHlGhlv~-l--~~l~~lQ~-~G~~~~~lIg  104 (392)
T 1y42_X           70 GIDPTAPSLHVGHLLP-L--MPLFWMYL-EGYKAFTLIG  104 (392)
T ss_dssp             EECCCSSSCBGGGHHH-H--HHHHHHHH-HTCEEEEEEC
T ss_pred             eecCCCCCccHHHHHH-H--HHHHHHHH-cCCcEEEEEc
Confidence            3457899 99999773 2  23555544 4898877765

>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}

Probab=82.28  E-value=3.1  Score=41.62  Aligned_cols=76  Identities=16%  Similarity=0.139  Sum_probs=43.2

Q ss_pred             ceEEEecCCCCC-CCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPS-GSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL  265 (365)
Q Consensus       187 ~~~I~~~~Pnpn-G~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l  265 (365)
                      ++.|..+ --|| |.|||||..+++   .+.+++..-|..|....|     .+ .....+...+++++ .++...+.+++
T Consensus        91 p~~vytG-~dPTagsLHLGH~v~~~---~l~~lQ~~~g~~v~I~Ig-----D~-~a~~~r~~lt~E~I-~~n~~~~~~~~  159 (451)
T 3foc_A           91 PIYIYTG-RGPSSGALHLGHLLPFI---FTKYLQDAFKCYVVIQIT-----DD-EKFLRNRSLSYAEV-DSYTRENIKDI  159 (451)
T ss_dssp             CEEEEEE-ECCCSSCCBHHHHHHHH---HHHHHHHHHTCEEEEEEC-----HH-HHHHHCTTCCHHHH-HHHHHHHHHHH
T ss_pred             CeEEEec-CCCCCCCccHHHHHHHH---HHHHHHHccCceEEEEee-----Cc-HHhhcccCCCHHHH-HHHHHHHHHHH
Confidence            4554444 4577 889999976653   334455555777776422     22 11111224565554 44555677788


Q ss_pred             HhcCCCcc
Q psy7914         266 QGFGCKFN  273 (365)
Q Consensus       266 ~~lgI~~D  273 (365)
                      -++|+..+
T Consensus       160 lA~GlDpe  167 (451)
T 3foc_A          160 IACGFDPD  167 (451)
T ss_dssp             HTTTCCGG
T ss_pred             HHcCCCCC
Confidence            88888654

>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A

Probab=80.13  E-value=1.9  Score=43.47  Aligned_cols=75  Identities=16%  Similarity=0.213  Sum_probs=42.3

Q ss_pred             ceEEEecCCCCC-CCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPS-GSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL  265 (365)
Q Consensus       187 ~~~I~~~~Pnpn-G~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l  265 (365)
                      ++.|..+ --|| |.|||||..+++.   +.++....|+.|.+..|=.+ +.-    .  ..++++++ .++...+..++
T Consensus       155 ~~~vy~G-~dPTag~LHLGh~v~~~~---~~~lQ~~~g~~~iilI~D~~-a~i----g--d~lt~e~i-~~n~~~~~~~~  222 (477)
T 1r6t_A          155 PFYLYTG-RGPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMTDDE-KYL----W--KDLTLDQA-YGDAVENAKDI  222 (477)
T ss_dssp             CEEEEEE-ECCCTTCCBGGGHHHHHH---HHHHHHHHTCCEEEEECHHH-HHH----H--SSCCHHHH-HHHHHHHHHHH
T ss_pred             CcEEEEc-ccCCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEecce-eee----c--CCCCHHHH-HHHHHHHHHHH
Confidence            4444444 3477 8999999988653   23344336888766655322 110    0  03454443 44444566777


Q ss_pred             HhcCCCcc
Q psy7914         266 QGFGCKFN  273 (365)
Q Consensus       266 ~~lgI~~D  273 (365)
                      .++|+..+
T Consensus       223 lA~GlDp~  230 (477)
T 1r6t_A          223 IACGFDIN  230 (477)
T ss_dssp             HTTCCCTT
T ss_pred             HHhCCCCC
Confidence            78888654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	365
d1h3na3	494	c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas	7e-49
d1pfva2	350	c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe	5e-45
d1rqga2	361	c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe	2e-36
d2d5ba2	348	c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR	1e-35
d1ilea3	452	c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe	3e-35
d1ivsa4	425	c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase	2e-34
d1ffya3	450	c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe	2e-31
d1irxa2	317	c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {	6e-12
d1li5a2	315	c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR	7e-10
d1iq0a2	370	c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS	5e-04
d1f7ua2	348	c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgR	0.003

>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Leucyl-tRNA synthetase (LeuRS)
species: Thermus thermophilus [TaxId: 274]

 Score =  169 bits (428), Expect = 7e-49
 Identities = 85/177 (48%), Positives = 109/177 (61%)

Query: 178 TLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGL 237
             +        YVL MFPYPSG LHMGH++ YT+ D LAR+  M G  V  PMGWDAFGL
Sbjct: 25  AKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGL 84

Query: 238 PAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLY 297
           PAENAA + G+ P++WT  NI   K  L+  G  ++W+ E+ TC+P+YY+W Q +FL ++
Sbjct: 85  PAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMW 144

Query: 298 HAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLAN 354
             GL YR +  VNW P   TVLA+EQV E          VEKR L QW++R T  A 
Sbjct: 145 EKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAE 201

>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Escherichia coli [TaxId: 562]

 Score =  155 bits (393), Expect = 5e-45
 Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 9/168 (5%)

Query: 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH 246
              V    PY +GS+H+GH+  +  +D   RY  M G  V      DA G P    A Q 
Sbjct: 3   KILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 62

Query: 247 GIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE 306
           GI P +         ++   GF    ++++  +T   +  + ++ ++  L   G +  + 
Sbjct: 63  GITPEQMIGEMSQEHQTDFAGFNI--SYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 120

Query: 307 ATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLAN 354
            +  +DP     L D  V        SGA    R    +F      + 
Sbjct: 121 ISQLYDPEKGMFLPDRFVV-------SGATPVMRDSEHFFFDLPSFSE 161

>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Pyrococcus abyssi [TaxId: 29292]

 Score =  133 bits (334), Expect = 2e-36
 Identities = 42/165 (25%), Positives = 64/165 (38%), Gaps = 10/165 (6%)

Query: 188 FYVLSMFPYPSGSLHMGHVR-VYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH 246
           + V S  PY +G +H GH+   Y  +D   RY  + G++V    G D  G P    A + 
Sbjct: 4   YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE 63

Query: 247 GIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE 306
           G  PRE        +K   Q     F++     T  P +YK +Q  FL  Y  G + +K 
Sbjct: 64  GRSPREIVDEFHEQIKITFQRAKISFDFFGR--TELPIHYKLSQEFFLKAYENGHLVKKV 121

Query: 307 ATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTR 351
               +   D   L D            G  +  R  + ++I+   
Sbjct: 122 TKQAYCEHDKMFLPDRF-------AICGRPISFRDSAHYYIKMQD 159

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Thermus thermophilus [TaxId: 274]

 Score =  130 bits (328), Expect = 1e-35
 Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 3/168 (1%)

Query: 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH 246
            FYV +   Y +   H+GH     ++D LAR++ ++G   F   G D  G     AA   
Sbjct: 4   VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAA 63

Query: 247 GIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE 306
           G DP+ +        K      G  ++    + T + ++ K  Q +   +Y AG +Y  E
Sbjct: 64  GEDPKAFVDRVSGRFKRAWDLLGIAYDD--FIRTTEERHKKVVQLVLKKVYEAGDIYYGE 121

Query: 307 ATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQWFIRTTRLAN 354
               +         ++++ E  +    G  VE+R+   +F R  +   
Sbjct: 122 YEGLYCVSCERFYTEKELVEG-LCPIHGRPVERRKEGNYFFRMEKYRP 168

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Thermus thermophilus [TaxId: 274]

 Score =  131 bits (330), Expect = 3e-35
 Identities = 42/195 (21%), Positives = 67/195 (34%), Gaps = 18/195 (9%)

Query: 178 TLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGL 237
           ++E ++    + V    P  +G  H+GH +  +  D   RY  M G    +  GWD  GL
Sbjct: 30  SVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGL 89

Query: 238 PAENAAHQHGIDP-----------------REWTVGNIATMKSQLQGFGCKFNWESELAT 280
           P E    +                      RE         ++  +      + E   AT
Sbjct: 90  PVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYAT 149

Query: 281 CDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLA-DEQVDEQGISWRSGARVEK 339
            +P Y +       +L+  GL+YR    V + P   T L+  E        WR    +  
Sbjct: 150 LEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYPHCWRCSTPLMY 209

Query: 340 RRLSQWFIRTTRLAN 354
                WFI+ T   +
Sbjct: 210 YATESWFIKNTLFKD 224

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Valyl-tRNA synthetase (ValRS)
species: Thermus thermophilus [TaxId: 274]

 Score =  129 bits (325), Expect = 2e-34
 Identities = 51/185 (27%), Positives = 70/185 (37%), Gaps = 19/185 (10%)

Query: 182 KRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLP--- 238
           K  +  F +    P  +GSLHMGH    ++ D L RY  M G       G D  G+    
Sbjct: 30  KSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQV 89

Query: 239 -AENAAHQHGIDP------------REWTVGNIATMKSQLQGFGCKFNWESELATCDPKY 285
             E    + G                +W   +  T+  QL+  G   +W  E  T D K 
Sbjct: 90  VVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKR 149

Query: 286 YKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQW 345
            +  +  F   YH GL YR    VNW P   T L+D +        R G  +E     QW
Sbjct: 150 SRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLE---VETCSRCGTPIEYAIFPQW 206

Query: 346 FIRTT 350
           ++R  
Sbjct: 207 WLRMR 211

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

 Score =  121 bits (304), Expect = 2e-31
 Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 13/183 (7%)

Query: 178 TLEGKRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGL 237
            LE  +  + F +    PY +G+LHMGH     + D + RY  M G       GWD  GL
Sbjct: 40  ALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGL 99

Query: 238 PAENAAHQHGIDPREWTV------------GNIATMKSQLQGFGCKFNWESELATCDPKY 285
           P E A  + G+D ++ +               I   K   +  G + ++     T  P+Y
Sbjct: 100 PIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEY 159

Query: 286 YKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQW 345
                 +F ++   GL+Y+ +  V W P   + LA+ +  E    WR+   V  R   QW
Sbjct: 160 EAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAE-IEYPHDWRTKKPVIFRATPQW 218

Query: 346 FIR 348
           F  
Sbjct: 219 FAS 221

>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Class I lysyl-tRNA synthetase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 63.6 bits (153), Expect = 6e-12
 Identities = 14/72 (19%), Positives = 24/72 (33%)

Query: 182 KRREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAEN 241
           +R E   YV+     PSG +H+G+ R    +  +       G  V     WD +    + 
Sbjct: 13  ERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKV 72

Query: 242 AAHQHGIDPREW 253
             +         
Sbjct: 73  PRNVPQEWKDYL 84

>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Cysteinyl-tRNA synthetase (CysRS)
species: Escherichia coli [TaxId: 562]

 Score = 57.3 bits (137), Expect = 7e-10
 Identities = 27/153 (17%), Positives = 42/153 (27%), Gaps = 5/153 (3%)

Query: 187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH 246
             YV  +  Y     H+GH R +   D +ARY    G  +                A+++
Sbjct: 24  GMYVCGITVY--DLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANEN 81

Query: 247 GIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE 306
           G          IA M                 AT    +      L   L   G  Y  +
Sbjct: 82  GESFVAMVDRMIAEMHKDFDALNILRPDMEPRATH---HIAEIIELTEQLIAKGHAYVAD 138

Query: 307 ATVNWDPIDNTVLADEQVDEQGISWRSGARVEK 339
                  +           +     ++GARV+ 
Sbjct: 139 NGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDV 171

>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Length = 370

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Thermus thermophilus [TaxId: 274]

 Score = 39.5 bits (91), Expect = 5e-04
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNV 226
             P+  LH+GH+R   + D +AR  A  G+ V
Sbjct: 16  VNPNKELHVGHLRNIALGDAIARILAYAGREV 47

>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 348

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 11/32 (34%), Positives = 13/32 (40%)

Query: 195 PYPSGSLHMGHVRVYTISDTLARYYAMNGKNV 226
           P  +   H GH+R   I   LA  Y   G  V
Sbjct: 17  PNIAKPFHAGHLRSTIIGGFLANLYEKLGWEV 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	365
d1h3na3	494	Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil	100.0
d1ffya3	450	Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus	100.0
d1pfva2	350	Methionyl-tRNA synthetase (MetRS) {Escherichia col	100.0
d1ilea3	452	Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop	100.0
d1ivsa4	425	Valyl-tRNA synthetase (ValRS) {Thermus thermophilu	100.0
d2d5ba2	348	Methionyl-tRNA synthetase (MetRS) {Thermus thermop	99.97
d1rqga2	361	Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys	99.97
d1li5a2	315	Cysteinyl-tRNA synthetase (CysRS) {Escherichia col	99.84
d1f7ua2	348	Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa	99.82
d1iq0a2	370	Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi	99.74
d1irxa2	317	Class I lysyl-tRNA synthetase {Archaeon Pyrococcus	99.54
d1gtra2	331	Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co	99.31
d1j09a2	305	Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph	99.29
d1nzja_	286	Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c	99.26
d1h3na2	192	Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil	97.82
d1wkaa1	143	Valyl-tRNA synthetase (ValRS) {Thermus thermophilu	96.5
d1udza_	179	Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop	94.32
d1j1ua_	306	Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc	94.08
d1n3la_	339	Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie	93.21
d1ffya2	194	Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus	89.61
d1i6la_	326	Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste	89.48
d1r6ta2	386	Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo	88.66
d1f7ua3	134	Arginyl-tRNA synthetase (ArgRS), N-terminal 'addit	88.39
d1h3fa1	343	Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi	88.25
d2ts1a_	319	Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth	86.08
d1iq0a3	96	Arginyl-tRNA synthetase (ArgRS), N-terminal 'addit	84.61

>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Leucyl-tRNA synthetase (LeuRS)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.3e-39  Score=327.60  Aligned_cols=180  Identities=47%  Similarity=0.882  Sum_probs=170.3

Q ss_pred             CCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHH
Q psy7914         183 RREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMK  262 (365)
Q Consensus       183 ~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~  262 (365)
                      .++++++|+.||||+||.||||||++++++|+++||+||+|++|++++|+||||+||+..|++.+..|+++++++...|+
T Consensus        30 ~~~~~~~i~~~pP~~nG~lHiGH~~~~~~~D~~~R~~rm~G~~v~~~~G~D~~G~~~e~~~~k~~~~~~~~~~~~~~~~~  109 (494)
T d1h3na3          30 GGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAK  109 (494)
T ss_dssp             CTTCEEEEEECCCCSSSCCBHHHHHHHHHHHHHHHHHHHTTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEeCCCCCCCchhhhHHHHHHHHHHHHHHHHccCCcccCcCCcCcchHHHHHHHHHhCCChHHHHHHHHHHhH
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEe
Q psy7914         263 SQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRL  342 (365)
Q Consensus       263 ~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~  342 (365)
                      +++++||+++||+++++|+|+.|.+.++++|.+|+++|+||++.++++||+.|+|+|++.||+....|..|+.+++.+++
T Consensus       110 ~~~~~~g~~~d~~~~~~T~d~~~~~~~~~~f~~l~~~g~iy~~~~~~~~~~~~~t~l~~~ev~~~~~~~~~~~~v~~~~~  189 (494)
T d1h3na3         110 ESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKREL  189 (494)
T ss_dssp             HHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTSBCEEEEE
T ss_pred             HHHHhcCcccCCCCceecCCccccchHHHHHHHhhhCCcEEeeeEEEEeecCccceecchhcccCccccccCceEEeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999644456668889999999


Q ss_pred             eeeeEeCchhHHHHHhhhcc
Q psy7914         343 SQWFIRTTRLANLVSLVDSV  362 (365)
Q Consensus       343 ~~~ff~Ls~~~~~L~~~~~~  362 (365)
                      ++|||+++.+++.+..+...
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~  209 (494)
T d1h3na3         190 EQWYLRITAYAERLLKDLEG  209 (494)
T ss_dssp             EEEEECGGGGHHHHHHTTTT
T ss_pred             Cchhhhhhcccccccccccc
Confidence            99999999999998877543

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=1.9e-37  Score=311.36  Aligned_cols=176  Identities=27%  Similarity=0.522  Sum_probs=166.1

Q ss_pred             CCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCH------------HH
Q psy7914         185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDP------------RE  252 (365)
Q Consensus       185 ~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~------------~e  252 (365)
                      +++|+|+++||||||.|||||+++++++|+++||+||+|++|++++|+|+||+||+.+|.+.+.++            ++
T Consensus        47 ~~~f~~~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~rm~G~~V~~~~G~D~~G~pie~~~~~~~~~~~~~~~~~~~~~~~~  126 (450)
T d1ffya3          47 NETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKE  126 (450)
T ss_dssp             SCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHH
T ss_pred             CCcEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCccccccccccCCcHHHHHHHhhCCccccccHHHHhhhcch
Confidence            457999999999999999999999999999999999999999999999999999999999887664            44


Q ss_pred             HHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccC
Q psy7914         253 WTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWR  332 (365)
Q Consensus       253 ~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~  332 (365)
                      ++.++.+.+++++++||+++||+.++.|+++.|.+.++++|.+|+++|+||++.++++|||.|+++|++.+++ .+.|.+
T Consensus       127 ~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~v~~~f~~l~~~G~iy~~~~~v~~~p~~~~~~~~~e~~-~~~~~r  205 (450)
T d1ffya3         127 FALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIE-YPHDWR  205 (450)
T ss_dssp             HHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEE-EEEETT
T ss_pred             hhhhhhhhHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHcCCeeccccccccccccCccccccccc-cccccc
Confidence            5788899999999999999999999999999999999999999999999999999999999999999999996 788999


Q ss_pred             CCCccEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914         333 SGARVEKRRLSQWFIRTTRLANLVSLVDS  361 (365)
Q Consensus       333 ~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~  361 (365)
                      |+.+++.+..++||++++.+++.+.++..
T Consensus       206 ~~~~~~~~~~~qwf~~~~~~~~~~~~~~~  234 (450)
T d1ffya3         206 TKKPVIFRATPQWFASISKVRQDILDAIE  234 (450)
T ss_dssp             TCCBCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred             ccCCceeeccccceeccccccccchhhcc
Confidence            99999999999999999999999887654

>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.3e-36  Score=287.71  Aligned_cols=168  Identities=23%  Similarity=0.359  Sum_probs=160.6

Q ss_pred             CceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy7914         186 DNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL  265 (365)
Q Consensus       186 ~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l  265 (365)
                      ++++|+.++|||||+|||||+|+++++|+++||+|++|++|.+++|+||||++|+..|.+.|+++.++++.+...+.+++
T Consensus         2 ~~~~i~~~~P~~nG~lHiGHar~~v~~D~l~R~lr~~G~~V~~v~~~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~~   81 (350)
T d1pfva2           2 KKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDF   81 (350)
T ss_dssp             CEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             CeEEEeCCCCCCCCCccccccHHHHHHHHHHHHHHhcCCceEecCccCCccHHHHHHHHHcCCCHHHHHHhHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeeee
Q psy7914         266 QGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQW  345 (365)
Q Consensus       266 ~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~~  345 (365)
                      +.|+|..+  ..+.|.++.|.+.+++++.+|.++|++|++...++||+.|+++|++.++       .||.+++.+++++|
T Consensus        82 ~~l~i~~~--~~~~t~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~l~d~~~-------~~g~~~~~~~~~~~  152 (350)
T d1pfva2          82 AGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFV-------VSGATPVMRDSEHF  152 (350)
T ss_dssp             HHTTCCCS--EEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGT-------TTCCCCEEEEEEEE
T ss_pred             HHcCCCcc--cCCCcCCcccchHHHHHHHHHhhccceeeccceEEEeCCCCeEcCCcee-------ccCCCccceecchh
Confidence            99999666  7788999999999999999999999999999999999999999999876       68999999999999


Q ss_pred             eEeCchhHHHHHhhhcc
Q psy7914         346 FIRTTRLANLVSLVDSV  362 (365)
Q Consensus       346 ff~Ls~~~~~L~~~~~~  362 (365)
                      ||+|++|++.|.++...
T Consensus       153 f~~l~~~~~~l~~~~~~  169 (350)
T d1pfva2         153 FFDLPSFSEMLQAWTRS  169 (350)
T ss_dssp             EECGGGGHHHHHHHHTT
T ss_pred             eeehHHHHHHHHHHhhc
Confidence            99999999999887643

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.9e-36  Score=301.44  Aligned_cols=178  Identities=23%  Similarity=0.336  Sum_probs=164.9

Q ss_pred             CCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCC--------------
Q psy7914         184 REDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGID--------------  249 (365)
Q Consensus       184 ~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~--------------  249 (365)
                      ++++|+|+.+||||||+|||||+|+++++|+++||+|++|++|++++|+|+||++|+.+|++.+..              
T Consensus        36 ~~~~f~i~~~pPy~nG~lHiGH~~~~v~~Dv~~Ry~r~~G~~V~~v~G~D~hG~~i~~~a~~~~~~~~~~~~~~~~~~~~  115 (452)
T d1ilea3          36 GGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERF  115 (452)
T ss_dssp             TSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHH
T ss_pred             CCCCEEEecCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCCceeccCCcCCCCHHHHHHHHHhhccccccchhHHHHHHH
Confidence            456799999999999999999999999999999999999999999999999999999999887643              


Q ss_pred             ---HHHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccc-
Q psy7914         250 ---PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVD-  325 (365)
Q Consensus       250 ---~~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve-  325 (365)
                         +.+++..+.+.+.+++.+||++.||..++.|+++.|.+.++++|.+|+++|++|++...++||+.|++++++.+++ 
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~T~~~~~~~~~~~~f~~l~~~G~iy~~~~~~~~~~~~~~~~~~~~~~~  195 (452)
T d1ilea3         116 NQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVAL  195 (452)
T ss_dssp             HHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHHHH
T ss_pred             HHHHhhHHhhhhhhHHHHHhhhccccccchhhhcCChHHHHHHHHHHHHHHhcCCcccccccchhhcccccccccccccc
Confidence               2445566778888999999999999899999999999999999999999999999999999999999999999987 


Q ss_pred             cCCCccCCCCccEEEEeeeeeEeCchhHHHHHhhhc
Q psy7914         326 EQGISWRSGARVEKRRLSQWFIRTTRLANLVSLVDS  361 (365)
Q Consensus       326 ~~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~~  361 (365)
                      .++.|++||.+++.+++.+||++++.+++.+..+..
T Consensus       196 ~~p~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (452)
T d1ilea3         196 GYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQ  231 (452)
T ss_dssp             TEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHH
T ss_pred             cCCCccCcCCceEEeeccchhhhhccchhhhhhhhc
Confidence            578999999999999999999999999999988764

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Valyl-tRNA synthetase (ValRS)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=4.3e-35  Score=289.72  Aligned_cols=175  Identities=30%  Similarity=0.450  Sum_probs=159.9

Q ss_pred             CCCCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHc----CCCH--------
Q psy7914         183 RREDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQH----GIDP--------  250 (365)
Q Consensus       183 ~~~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~----g~~~--------  250 (365)
                      .++++++|+++||||||+|||||+|+++++|+++||+|++||+|++++|+|+||++|+..|++.    +..+        
T Consensus        31 ~~~~~f~i~~~pPy~NG~lHlGH~~~yv~~Dv~~Ry~r~~G~~V~~v~g~D~hG~~i~~~aek~~~~~~~~~~~~~~~~~  110 (425)
T d1ivsa4          31 SGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKF  110 (425)
T ss_dssp             CCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHHHHHTTTCCGGGSTTTHH
T ss_pred             CCCCcEEEEcCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCceeecCcccCCcchHHHHHHHhhcccCCChHHhcHHHH
Confidence            4456899999999999999999999999999999999999999999999999999999998874    3333        


Q ss_pred             ----HHHHHHHHHHHHHHHHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCcccccccccc
Q psy7914         251 ----REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDE  326 (365)
Q Consensus       251 ----~e~~~~~~~~i~~~l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~  326 (365)
                          ..++..+.+.|+++|++||+.+||+.+++|+++.|.+.++++|.+|.++|++|++++.++||+.|+++|++.+++ 
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~lg~~~d~~~~~~t~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~~c~~~~~~l~~~~~~-  189 (425)
T d1ivsa4         111 LERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVE-  189 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEECCGGGEE-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCccCcchhhcccchhhhhhhHHHHhhhhccCcccccceeecccccccccccccccc-
Confidence                234677889999999999999998889999999999999999999999999999999999999999999999985 


Q ss_pred             CCCccCCCCccEEEEeeeeeEeCchhHHHHHhhh
Q psy7914         327 QGISWRSGARVEKRRLSQWFIRTTRLANLVSLVD  360 (365)
Q Consensus       327 ~~~c~~~g~~~e~~~~~~~ff~Ls~~~~~L~~~~  360 (365)
                        .|..||.+++.+.+++||++++++.+.+..+.
T Consensus       190 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (425)
T d1ivsa4         190 --TCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGL  221 (425)
T ss_dssp             --EETTTCSBCEEEECCEEEECHHHHHHHHHHHH
T ss_pred             --cccccCcccccccccchhhccchhhccchhhh
Confidence              46679999999999999999999999887665

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=1.6e-31  Score=255.75  Aligned_cols=175  Identities=22%  Similarity=0.327  Sum_probs=165.7

Q ss_pred             CCceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy7914         185 EDNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ  264 (365)
Q Consensus       185 ~~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~  264 (365)
                      +++++|++|+|||||+|||||+|+++++|+++|+||++||+|.+++|+||+|++|+..|.++|+++++++..+...++++
T Consensus         2 ~~~~~~~~~~PypnG~lHiGH~r~~v~~D~l~R~lr~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~   81 (348)
T d2d5ba2           2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRA   81 (348)
T ss_dssp             CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEecCCCCCCCCcccccCHHHHHHHHHHHHHHhcCCCeEecCcCCCCCHHHHHHHHHcCCCHHHhhhhHHHHHHHH
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeee
Q psy7914         265 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQ  344 (365)
Q Consensus       265 l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~  344 (365)
                      ++.+||.+|  .+.++..+.+...++.++.++.++|++|++...++||+.|++++.+.++ .+..|..||..++.....+
T Consensus        82 ~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  158 (348)
T d2d5ba2          82 WDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKEL-VEGLCPIHGRPVERRKEGN  158 (348)
T ss_dssp             HHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTS-BTTBCTTTCSBCEEEEEEE
T ss_pred             HHhcCcccc--ceeecccchhhHHHHHHHHHHHhhCccccccccccccccccceeccccc-cccccccCCCceEEecccc
Confidence            999999888  6678888889999999999999999999999999999999999999888 5788999999999999999


Q ss_pred             eeEeCchhHHHHHhhhcc
Q psy7914         345 WFIRTTRLANLVSLVDSV  362 (365)
Q Consensus       345 ~ff~Ls~~~~~L~~~~~~  362 (365)
                      +|++++.|.+.+.+....
T Consensus       159 ~~~~~~~~~~~~~~~~~~  176 (348)
T d2d5ba2         159 YFFRMEKYRPWLQEYIQE  176 (348)
T ss_dssp             EEECGGGGHHHHHHHHHT
T ss_pred             cccchHhhhhhHHHhhhc
Confidence            999999999998887543

>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.97  E-value=6.6e-31  Score=252.69  Aligned_cols=168  Identities=26%  Similarity=0.350  Sum_probs=157.4

Q ss_pred             CceEEEecCCCCCCCCchHHHHH-HHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy7914         186 DNFYVLSMFPYPSGSLHMGHVRV-YTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ  264 (365)
Q Consensus       186 ~~~~I~~~~PnpnG~LHiGHar~-~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~  264 (365)
                      .+++|+.+||||||+|||||+|+ ++.+|+++||+|++||+|++++|+||+|++|+.+|.+.|++|+++++.+...+.++
T Consensus         2 ~~~~v~~~~P~p~G~lHiGH~~~~~i~~Dil~R~~r~~G~~V~~v~g~D~~g~~i~~~A~~~g~~~~~~~~~~~~~~~~~   81 (361)
T d1rqga2           2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKIT   81 (361)
T ss_dssp             CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             ceEEEecCCCCCCCCcccccccccHHHHHHHHHHHHhcCCceEecCccCcccHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence            37999999999999999999886 78899999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCCCCccccccccccCCCccCCCCccEEEEeee
Q psy7914         265 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPIDNTVLADEQVDEQGISWRSGARVEKRRLSQ  344 (365)
Q Consensus       265 l~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~~~t~Ls~~eve~~~~c~~~g~~~e~~~~~~  344 (365)
                      +..+++.++  .+..|.++.+...++.++..+.++|.+|++...++||+.|++++..       .|..||.+++++..++
T Consensus        82 ~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~~~  152 (361)
T d1rqga2          82 FQRAKISFD--FFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPD-------RFAICGRPISFRDSAH  152 (361)
T ss_dssp             HHHHTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCG-------GGTTTCCBCEEEEEEE
T ss_pred             ccccccccc--cccccccchhhhhhhhhhhhccccCceeeeeeeeecccccceeccc-------ccccCCCcccccccce
Confidence            999999877  6778999999999999999999999999999999999999998654       5778999999999999


Q ss_pred             eeEeCchhHHHHHhhhcc
Q psy7914         345 WFIRTTRLANLVSLVDSV  362 (365)
Q Consensus       345 ~ff~Ls~~~~~L~~~~~~  362 (365)
                      |||+++.|+++|.+....
T Consensus       153 ~f~~~~~~~~~l~~~~~~  170 (361)
T d1rqga2         153 YYIKMQDFAERLKRWIEK  170 (361)
T ss_dssp             EEECGGGTHHHHHHHHHS
T ss_pred             EEEecchhhhhhhhcccc
Confidence            999999999998876543

>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Cysteinyl-tRNA synthetase (CysRS)
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=3.6e-21  Score=182.89  Aligned_cols=124  Identities=16%  Similarity=0.073  Sum_probs=108.6

Q ss_pred             CceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy7914         186 DNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL  265 (365)
Q Consensus       186 ~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l  265 (365)
                      .+++|+  .|+|||++||||+|++|++|+++|+||+.|++|.+++|+||||.||...|++.+.++.++++.+...+.+++
T Consensus        23 ~~~yv~--Gptv~g~~HIGH~R~av~gD~laR~lr~~G~~V~~~~~~dd~G~~i~~~a~~~~~~~~e~~~~~~~~~~~~~  100 (315)
T d1li5a2          23 VGMYVC--GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDF  100 (315)
T ss_dssp             EEEEEC--CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEec--CCcCCCCcccchhHHHHHHHHHHHHHHHcCCcEEEEecccchhHHHHHHHhhhhhccccccccchhhhhhhH
Confidence            345553  579999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCC
Q psy7914         266 QGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPI  314 (365)
Q Consensus       266 ~~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~  314 (365)
                      +.++|..+  .++.+. ..+...+...+.+|..+|.+|......+||..
T Consensus       101 ~~~~i~~~--~~~~~~-~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~  146 (315)
T d1li5a2         101 DALNILRP--DMEPRA-THHIAEIIELTEQLIAKGHAYVADNGDVMFDV  146 (315)
T ss_dssp             HHTTCCCC--SBCCBG-GGCHHHHHHHHHHHHHTTSEEECTTSCEEECG
T ss_pred             HhcCCCCC--cEEEec-chhhhhhhhHHHHhhccCceeccccceEEeec
Confidence            99999876  333333 45667788889999999999988777666644

>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=3.1e-20  Score=179.71  Aligned_cols=125  Identities=18%  Similarity=0.141  Sum_probs=102.2

Q ss_pred             CceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH---cC---------------
Q psy7914         186 DNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ---HG---------------  247 (365)
Q Consensus       186 ~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~---~g---------------  247 (365)
                      ++++|++++|||||||||||+|++++||+|+|+|+..||+|.+++|+||+|.||...+..   .+               
T Consensus         8 kki~vE~~SaNpt~plHvGH~R~aiiGd~larlL~~~G~~V~re~yvnD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~l~~   87 (348)
T d1f7ua2           8 KKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLFD   87 (348)
T ss_dssp             CEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHHH
T ss_pred             CEEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHCCCeEEEEEEECCchHHHHHHHHHHHHhccccccccccchhHHH
Confidence            379999999999999999999999999999999999999999999999999999877632   00               


Q ss_pred             ------------C-----------------------CH------HHHHHHHHHHHHHHHHhcCCCcc-CCCcccccChhh
Q psy7914         248 ------------I-----------------------DP------REWTVGNIATMKSQLQGFGCKFN-WESELATCDPKY  285 (365)
Q Consensus       248 ------------~-----------------------~~------~e~~~~~~~~i~~~l~~lgI~~D-~~~~~~t~d~~~  285 (365)
                                  .                       ++      ..+++..++.+++++++|||.+| |+.+...    +
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~~~l~i~fD~~~~Es~~----~  163 (348)
T d1f7ua2          88 VYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQV----S  163 (348)
T ss_dssp             HHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGC----C
T ss_pred             HHHHHHhhhcccchhhhhhhhhHhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc----c
Confidence                        0                       00      12356777899999999999999 5444332    2


Q ss_pred             HHHHHHHHHHHHHCCCEEEeCcceeecCC
Q psy7914         286 YKWTQALFLDLYHAGLVYRKEATVNWDPI  314 (365)
Q Consensus       286 ~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~  314 (365)
                      ......++..|.++|++|+.+++.|++..
T Consensus       164 ~~~~~~v~~~L~~~~~~~~~~ga~~~~~~  192 (348)
T d1f7ua2         164 KESMLKAIDLFKEKGLTHEDKGAVLIDLT  192 (348)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETTEEEEEGG
T ss_pred             ccchHHHHHHHHhhccccccCCcccccch
Confidence            33445788999999999999999999753

>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=2e-18  Score=168.16  Aligned_cols=126  Identities=21%  Similarity=0.223  Sum_probs=99.0

Q ss_pred             CceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHH---cCC------CH------
Q psy7914         186 DNFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQ---HGI------DP------  250 (365)
Q Consensus       186 ~~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~---~g~------~~------  250 (365)
                      ++++|.+.||||+|||||||+|++++||+|+|+|+..||+|+++++++|+|+||...+..   .+.      .+      
T Consensus         7 ~~i~vEf~SpN~~kplHvGHlRs~iiGd~laril~~~G~~V~r~nyigD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~~~~   86 (370)
T d1iq0a2           7 GVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGR   86 (370)
T ss_dssp             EEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHH
T ss_pred             CeEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHcCCEEEEEEeECCchHHHHHHHHHHHHhccccccccchhhhhhh
Confidence            368888999999999999999999999999999999999999999999999999876532   110      00      


Q ss_pred             ------------------------------HHHHHHHHHHHHHHHHhcCCCcc-CCCcccccChhhHHHHHHHHHHHHHC
Q psy7914         251 ------------------------------REWTVGNIATMKSQLQGFGCKFN-WESELATCDPKYYKWTQALFLDLYHA  299 (365)
Q Consensus       251 ------------------------------~e~~~~~~~~i~~~l~~lgI~~D-~~~~~~t~d~~~~~~v~~~f~~L~~k  299 (365)
                                                    ++....+...++++|.+||+.|| |+.+.   +-.+...+..++..|.++
T Consensus        87 ~y~~~~~~~~~~~~~~~~~e~~~~le~~~~~~~~~~~l~~~~~~l~~l~v~fD~~~~Es---~l~~~~~~~~~i~~l~~~  163 (370)
T d1iq0a2          87 AYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLVWES---DIVRAGLLQKALALLEQS  163 (370)
T ss_dssp             HHHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSEEEEHH---HHHHTTHHHHHHHHHTTS
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccceeeceeeeec---ccccccchhhhHhhhhhc
Confidence                                          12245666778899999999999 44333   322344568899999999


Q ss_pred             CCEEEeC-----cceeecCC
Q psy7914         300 GLVYRKE-----ATVNWDPI  314 (365)
Q Consensus       300 G~Iy~~~-----~~v~yc~~  314 (365)
                      |.+|+.+     +.+|.+..
T Consensus       164 ~~~~~~~~~~~~ga~~~d~~  183 (370)
T d1iq0a2         164 PHVFRPREGKYAGALVMDAS  183 (370)
T ss_dssp             TTEECCSSSTTTTCEEEECT
T ss_pred             cceeeccccccceEEEecCc
Confidence            9999876     56666543

>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Class I lysyl-tRNA synthetase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.54  E-value=1.2e-15  Score=140.04  Aligned_cols=57  Identities=21%  Similarity=0.250  Sum_probs=51.9

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAA  243 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A  243 (365)
                      +.+|+.++|||||+|||||+|+++++|+++|++|+.|++|.+++|+||+|.++...+
T Consensus        18 ~~~v~~~~~~PnG~lHIGHlr~~i~gD~laR~lr~~G~~V~~~~~~dd~g~~~~~~~   74 (317)
T d1irxa2          18 EKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPR   74 (317)
T ss_dssp             SEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCS
T ss_pred             CeEEEECCCCCCCCccccccHHHHHHHHHHHHHHHcCCCEEEEEEeccCcchhhhHH
Confidence            345555789999999999999999999999999999999999999999999887665

>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutaminyl-tRNA synthetase (GlnRS)
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=1.6e-12  Score=124.20  Aligned_cols=102  Identities=18%  Similarity=0.287  Sum_probs=82.9

Q ss_pred             ceEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ  266 (365)
Q Consensus       187 ~~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~  266 (365)
                      +-+++.++|.|||+|||||+|+++++-.+||  +..|.-++++-.+|-                .....++.+.|.++|+
T Consensus        18 ~~v~tRFAPSPTG~LHiG~~rtal~n~l~Ak--~~~G~fiLRIEDtD~----------------~R~~~~~~~~I~~dL~   79 (331)
T d1gtra2          18 TTVHTRFPPEPNGYLHIGHAKSICLNFGIAQ--DYKGQCNLRFDDTNP----------------VKEDIEYVESIKNDVE   79 (331)
T ss_dssp             SSCEEEECCCSSSCCBHHHHHHHHHHHHHHH--HTTCEEEEEECCCCG----------------GGCCHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC----------------CcccchHHHHHHHHHH
Confidence            3589999999999999999999999999999  789999999988874                3334688999999999


Q ss_pred             hcCCCccCCCcccccChhhHHHHHHHHHHHHHCCCEEEeCcceeecCC
Q psy7914         267 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEATVNWDPI  314 (365)
Q Consensus       267 ~lgI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy~~~~~v~yc~~  314 (365)
                      ||||.+|.. .++.  ..+.+.-++++.+|.++|++|     .|||..
T Consensus        80 WLGl~wD~~-~~~Q--S~r~~~Y~~~~~~L~~~G~aY-----~C~cs~  119 (331)
T d1gtra2          80 WLGFHWSGN-VRYS--SDYFDQLHAYAIELINKGLAY-----VDELTP  119 (331)
T ss_dssp             HTTCCCSSS-CEEG--GGGHHHHHHHHHHHHHTTSEE-----EECCCH
T ss_pred             HHhcccccc-ceec--chHHHHHHHHHHhhhhcCCcc-----cccccH
Confidence            999977722 2222  334556688999999999998     456653

>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutamyl-tRNA synthetase (GluRS)
species: Thermus thermophilus [TaxId: 274]

Probab=99.29  E-value=1.7e-12  Score=122.65  Aligned_cols=98  Identities=18%  Similarity=0.253  Sum_probs=78.5

Q ss_pred             EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914         189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF  268 (365)
Q Consensus       189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l  268 (365)
                      +||.++|.|||+|||||+|++++.+.+||  ...|.-++++-.+|.                .....++.+.|.++|++|
T Consensus         2 vvtRfaPsPtG~lHiG~~rtal~n~~~Ak--~~~G~~iLRidDtD~----------------~R~~~~~~~~I~~dL~wL   63 (305)
T d1j09a2           2 VVTRIAPSPTGDPHVGTAYIALFNYAWAR--RNGGRFIVRIEDTDR----------------ARYVPGAEERILAALKWL   63 (305)
T ss_dssp             CEEEECCCCSSSCBHHHHHHHHHHHHHHH--HTTCEEEECBCCCCT----------------TSCCTTHHHHHHHHHHHT
T ss_pred             eEEecCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCC----------------ccCchHHHHHHHHHHHHH
Confidence            68999999999999999999999999999  789988999877763                112246889999999999


Q ss_pred             CCCcc-CCC----cccccChhhHHHHHHHHHHHHHCCCEEE
Q psy7914         269 GCKFN-WES----ELATCDPKYYKWTQALFLDLYHAGLVYR  304 (365)
Q Consensus       269 gI~~D-~~~----~~~t~d~~~~~~v~~~f~~L~~kG~Iy~  304 (365)
                      ||.+| +..    ........+.+...+++.+|.++|++|.
T Consensus        64 gi~wD~~p~~~~~~~~~~qS~r~~~y~~~~~~Li~~g~aY~  104 (305)
T d1j09a2          64 GLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYR  104 (305)
T ss_dssp             TCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEE
T ss_pred             hcCcccCCcCCCCCcceeeecchhHHHHHHHHHHHcCCeee
Confidence            99877 110    0112345667778899999999999984

>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutamyl-Q tRNA-Asp synthetase YadB
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=4.4e-12  Score=118.67  Aligned_cols=94  Identities=24%  Similarity=0.311  Sum_probs=77.0

Q ss_pred             EEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914         189 YVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF  268 (365)
Q Consensus       189 ~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l  268 (365)
                      +|+.++|.|||+|||||+|++++.-.+||  +..|.-++++-.+|.                .....++.+.|.++|++|
T Consensus         3 ~~tRFAPsPtG~lHiG~~rtal~n~~~Ak--~~~G~~iLRieDtD~----------------~R~~~~~~~~I~~dL~wl   64 (286)
T d1nzja_           3 YIGRFAPSPSGELHFGSLIAALGSYLQAR--ARQGRWLVRIEDIDP----------------PREVPGAAETILRQLEHY   64 (286)
T ss_dssp             CEEEECCCTTSCCCHHHHHHHHHHHHHHH--HTTCEEEEEECCSCG----------------GGSCTTHHHHHHHHHHHT
T ss_pred             ceEeeCcCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCCCCC----------------CcCCHHHHHHHHHHHHHh
Confidence            78999999999999999999999999999  789999999988874                222247899999999999


Q ss_pred             CCCccCCCcccccChhhHHHHHHHHHHHHHCCCEE
Q psy7914         269 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVY  303 (365)
Q Consensus       269 gI~~D~~~~~~t~d~~~~~~v~~~f~~L~~kG~Iy  303 (365)
                      |+.+|  .... ....+.+...+++.+|.++|++|
T Consensus        65 gl~~d--~~~~-~QS~r~~~Y~~~~~~L~~~g~aY   96 (286)
T d1nzja_          65 GLHWD--GDVL-WQSQRHDAYREALAWLHEQGLSY   96 (286)
T ss_dssp             TCCCS--SCCE-EGGGCHHHHHHHHHHHHHTTCEE
T ss_pred             hhccc--cccc-hhHHHHHHHHHHHHHHHHcCCcc
Confidence            99777  3222 22234455678999999999998

>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: ValRS/IleRS/LeuRS editing domain
superfamily: ValRS/IleRS/LeuRS editing domain
family: ValRS/IleRS/LeuRS editing domain
domain: Leucyl-tRNA synthetase (LeuRS)
species: Thermus thermophilus [TaxId: 274]

Probab=97.82  E-value=5.6e-06  Score=71.91  Aligned_cols=48  Identities=10%  Similarity=0.182  Sum_probs=41.7

Q ss_pred             cccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCcccccccccc
Q psy7914          49 EPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTKE  110 (365)
Q Consensus        49 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a  110 (365)
                      ||+|++|.|++.+.          +..|.||||+|.||++..    +++++++|+++.....
T Consensus         1 rS~g~~V~F~v~~~----------~~~l~iwTTtPwTlpgn~----avav~p~~~y~~~~~~   48 (192)
T d1h3na2           1 RSEGAEILFPVEGK----------EVRIPVFTTRPDTLFGAT----FLVLAPEHPLTLELAA   48 (192)
T ss_dssp             EEEEEEEEEEBTTS----------SCEEEEEESCGGGGGGCC----EEEECTTSHHHHHTSC
T ss_pred             CCceEEEEEEecCC----------CcEEEEEeCCcchhhhcc----EEEECCchhHHHHHhh
Confidence            79999999999653          456999999999999999    9999999999865443

>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: ValRS/IleRS/LeuRS editing domain
superfamily: ValRS/IleRS/LeuRS editing domain
family: ValRS/IleRS/LeuRS editing domain
domain: Valyl-tRNA synthetase (ValRS)
species: Thermus thermophilus [TaxId: 274]

Probab=96.50  E-value=0.0013  Score=54.06  Aligned_cols=38  Identities=8%  Similarity=-0.002  Sum_probs=32.1

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCccccc
Q psy7914          53 VRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILA  105 (365)
Q Consensus        53 ~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~  105 (365)
                      ..|.|++.+           ++.|.||||+|+||++..    +++++|+++..
T Consensus         4 ~yvkf~~~~-----------~~~i~i~TTrP~Tl~g~~----avav~P~d~~~   41 (143)
T d1wkaa1           4 YTLRYEVEG-----------GGFIEIATVRPETVFADQ----AIAVHPEDERY   41 (143)
T ss_dssp             EEEEEEBTT-----------SCEEEEEESCGGGGGGCC----EEEECTTCTTT
T ss_pred             EEEEEEeCC-----------CCEEEEEECCcchhcCce----EEEEecccccc
Confidence            358888854           456999999999999999    99999987654

>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: ValRS/IleRS/LeuRS editing domain
superfamily: ValRS/IleRS/LeuRS editing domain
family: ValRS/IleRS/LeuRS editing domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Thermus thermophilus [TaxId: 274]

Probab=94.32  E-value=0.015  Score=48.98  Aligned_cols=51  Identities=14%  Similarity=0.062  Sum_probs=37.6

Q ss_pred             eEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCccccccccccc
Q psy7914          53 VRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTKEK  111 (365)
Q Consensus        53 ~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~  111 (365)
                      +.|.|++.+...    ....+..+.||||+|.||++..    +++++++++.+......
T Consensus         3 i~V~F~l~~~~~----~~~~~~~l~iwTTtPwTLp~n~----avav~p~~~y~~~~~~~   53 (179)
T d1udza_           3 VYVRFPLKEPKK----LGLEKASLLIWTTTPWTLPGNV----AAAVHPEYTYAAFQVGD   53 (179)
T ss_dssp             EEEEEEBSCGGG----GTCSSEEEEEEESCGGGGGGCC----EEEECTTSEEEEEEETT
T ss_pred             EEEEEEecCCcc----ccCCCceEEEEeCCcchhhcce----eeecCCCCcceEEEEee
Confidence            568999864311    0011345999999999999999    99999999887665443

>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.08  E-value=0.089  Score=47.60  Aligned_cols=68  Identities=16%  Similarity=0.068  Sum_probs=41.3

Q ss_pred             CCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914         194 FPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN  273 (365)
Q Consensus       194 ~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D  273 (365)
                      .--|||+|||||...   ...+.++++ .|++|.+..+=. |       |.-...+..+....+.+.....+.++|+...
T Consensus        34 G~~PTG~lHlGh~v~---~~~~~~lq~-~g~~~~~~IaD~-~-------a~~~~~~~~~~~~~~~~~~~~~~~a~G~~~~  101 (306)
T d1j1ua_          34 GFEPSGKIHLGHYLQ---IKKMIDLQN-AGFDIIILLADL-H-------AYLNQKGELDEIRKIGDYNKKVFEAMGLKAK  101 (306)
T ss_dssp             EECCCSSCBHHHHHH---HHHHHHHHH-TTEEEEEEECHH-H-------HHHTTCCCHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred             eECCCCcchHHHHHH---HHHHHHHHH-CCCcEEEEeccH-H-------HHhhhccchhhhhhhhhHHHHHHHhhhcccc
Confidence            344579999999762   234555555 499988875521 1       1111112234445566677788889999665

>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.21  E-value=0.17  Score=46.23  Aligned_cols=76  Identities=11%  Similarity=0.024  Sum_probs=43.6

Q ss_pred             eEEEecCCCCCCCCchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCCCCchHHHHHHHcCC-CH-HHHHHHHHHHHHHHH
Q psy7914         188 FYVLSMFPYPSGSLHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDAFGLPAENAAHQHGI-DP-REWTVGNIATMKSQL  265 (365)
Q Consensus       188 ~~I~~~~PnpnG~LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd~G~~I~~~A~~~g~-~~-~e~~~~~~~~i~~~l  265 (365)
                      +.|..+. -|||+|||||..+++.   +.+++ ..|++|.+..+=.++ .    .....+. .. ....+.+...+...+
T Consensus        33 ~~vy~G~-~PTg~lHlG~~l~~~~---l~~~q-~~g~~~~~~IaD~~a-~----~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (339)
T d1n3la_          33 LKIYWGT-ATTGKPHVAYFVPMSK---IADFL-KAGCEVTILFADLHA-Y----LDNMKAPWELLELRVSYYENVIKAML  102 (339)
T ss_dssp             CEEEEEE-CCSSCCBGGGHHHHHH---HHHHH-HTTCEEEEEECHHHH-H----HTTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEee-CCCCccHHHHHHHHHH---HHHHH-HCCCcEEEEecchhh-h----ccCCCCchHHHHHHHHHHHHHHHHHH
Confidence            4444442 3689999999888654   44444 469998877553221 0    0000000 00 122355566778888


Q ss_pred             HhcCCCcc
Q psy7914         266 QGFGCKFN  273 (365)
Q Consensus       266 ~~lgI~~D  273 (365)
                      .++|+.++
T Consensus       103 ~a~g~d~~  110 (339)
T d1n3la_         103 ESIGVPLE  110 (339)
T ss_dssp             HHHTCCCT
T ss_pred             HhhccChH
Confidence            89999776

>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: ValRS/IleRS/LeuRS editing domain
superfamily: ValRS/IleRS/LeuRS editing domain
family: ValRS/IleRS/LeuRS editing domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.61  E-value=0.022  Score=48.35  Aligned_cols=55  Identities=11%  Similarity=0.101  Sum_probs=40.3

Q ss_pred             cccceEEEEEeCCCCCCCCCCCCCCCcEEEECCCCchhhhccccceEEEecCccccccccccc
Q psy7914          49 EPNGVRFEFQILPQPEGTSNSAPTADTLSIWLPEDTIEDVAKSQGQYITVKSSHILASKTKEK  111 (365)
Q Consensus        49 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~v~t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~  111 (365)
                      +|.++.|.|++.....    ....+..+-||||+|.||++..    ++++++++.....+...
T Consensus         4 ~s~sv~v~F~i~~~~~----~~~~~~~l~iwTTtPwTlp~n~----alav~p~~~y~~~~~~~   58 (194)
T d1ffya2           4 RSASIYVAFNVKDDKG----VVDADAKFIIWTTTPWTIPSNV----AITVHPELKYGQYNVNG   58 (194)
T ss_dssp             EEEEEECCBCCCSSTT----GGGTTCCBCCEESCGGGSSCCB----CCCCCTTCCCCCCCTTT
T ss_pred             cCCEEEEEEEEcCCCC----ccCCCCeEEEecCCCchhhhhh----heeeCCccccceeeeec
Confidence            5788999999864311    0111345899999999999999    99999998765555433

>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.48  E-value=0.28  Score=44.45  Aligned_cols=63  Identities=19%  Similarity=0.210  Sum_probs=38.8

Q ss_pred             CCCCCchHHHHHHHHhhHHHHHHH-HCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q psy7914         197 PSGSLHMGHVRVYTISDTLARYYA-MNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN  273 (365)
Q Consensus       197 pnG~LHiGHar~~v~~DvlaR~lr-~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~lgI~~D  273 (365)
                      |||.|||||..+++     ..+.. ..|+++.+. =.|.|..       -...++.++ .++...+..++-++|+..+
T Consensus        10 PSG~~HlG~~~g~i-----~~~~~lq~~~~~~i~-iAD~hal-------t~~~~~~~l-~~~~~~~~~~~lA~G~dp~   73 (326)
T d1i6la_          10 PSGVITIGNYIGAL-----RQFVELQHEYNCYFC-IVDQHAI-------TVWQDPHEL-RQNIRRLAALYLAVGIDPT   73 (326)
T ss_dssp             CCSCCBHHHHHHTH-----HHHHHHTTTSEEEEE-ECHHHHT-------TSCCCHHHH-HHHHHHHHHHHHHTTCCTT
T ss_pred             CCCccHHHHHHHHH-----HHHHHHhCCCCEEEE-eehHHhh-------ccCCCHHHH-HHHHHHHHHHhhhhhcccc
Confidence            59999999977653     23322 348887544 3354432       122345444 3455666788999999877

>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.66  E-value=0.36  Score=44.99  Aligned_cols=74  Identities=15%  Similarity=0.227  Sum_probs=45.0

Q ss_pred             ceEEEecCCCCCCC-CchHHHHHHHHhhHHHHHHH-HCCCcEEeccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy7914         187 NFYVLSMFPYPSGS-LHMGHVRVYTISDTLARYYA-MNGKNVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ  264 (365)
Q Consensus       187 ~~~I~~~~PnpnG~-LHiGHar~~v~~DvlaR~lr-~~G~~V~~~~g~Dd~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~  264 (365)
                      ++.|.++ --|||+ |||||..++..    .|++. ..|..|... ..|+|      +......++.+.. ++.....++
T Consensus        74 p~~vytG-~~PSg~~lHlGh~v~~~~----~~~~q~~~~~~v~i~-iaD~~------a~~~~~~~~~e~~-~~~~e~~~~  140 (386)
T d1r6ta2          74 PFYLYTG-RGPSSEAMHVGHLIPFIF----TKWLQDVFNVPLVIQ-MTDDE------KYLWKDLTLDQAY-GDAVENAKD  140 (386)
T ss_dssp             CEEEEEE-ECCCTTCCBGGGHHHHHH----HHHHHHHHTCCEEEE-ECHHH------HHHHSSCCHHHHH-HHHHHHHHH
T ss_pred             CeEEEec-cCCCCchhHHHHHHHHHH----HHHHHHhcccceEEE-ecchH------hhhcccCCHHHHH-HHHHHHHHH
Confidence            5666655 347895 89999987654    34544 457777664 33432      1122355665554 444566667


Q ss_pred             HHhcCCCcc
Q psy7914         265 LQGFGCKFN  273 (365)
Q Consensus       265 l~~lgI~~D  273 (365)
                      +-++|+..+
T Consensus       141 ~lA~GlDp~  149 (386)
T d1r6ta2         141 IIACGFDIN  149 (386)
T ss_dssp             HHTTCCCTT
T ss_pred             HHHhCCCcc
Confidence            778998776

>d1f7ua3 d.67.2.1 (A:2-135) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
family: Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
domain: Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.39  E-value=0.027  Score=45.40  Aligned_cols=41  Identities=5%  Similarity=-0.056  Sum_probs=33.8

Q ss_pred             CCCCchhhhccccceEEEecCccccccccccccCcceeEEEccchhh
Q psy7914          80 LPEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKS  126 (365)
Q Consensus        80 t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~~~gf~n~~i~n~~~~  126 (365)
                      =++|..++...    ...+..+..+.+.+++| | |+||++..+.+.
T Consensus        79 gknP~eiA~el----a~~l~~~~~i~~v~~~G-p-FINf~l~~~~l~  119 (134)
T d1f7ua3          79 GANPKDLAVQW----AEKFPCGDFLEKVEANG-P-FIQFFFNPQFLA  119 (134)
T ss_dssp             TCCHHHHHHHH----HHTCCCTTTEEEEEEET-T-EEEEEECHHHHH
T ss_pred             CCCHHHHHHHH----HHHcCCCCceeeEEeeC-C-eEEEEECHHHHH
Confidence            35799999887    55666667788899999 6 999999999876

>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Thermus thermophilus [TaxId: 274]

Probab=88.25  E-value=0.18  Score=46.26  Aligned_cols=40  Identities=28%  Similarity=0.369  Sum_probs=26.9

Q ss_pred             ceEEEecCCCCCCC-CchHHHHHHHHhhHHHHHHHHCCCcEEeccC
Q psy7914         187 NFYVLSMFPYPSGS-LHMGHVRVYTISDTLARYYAMNGKNVFQPMG  231 (365)
Q Consensus       187 ~~~I~~~~PnpnG~-LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g  231 (365)
                      ++.|..+ --|||+ |||||..+...    .+++...|+++.+..+
T Consensus        33 ~~~vY~G-~~PTg~sLHlGh~v~~~~----~~~lq~~g~~~~~~ia   73 (343)
T d1h3fa1          33 PLTVKLG-ADPTRPDLHLGHAVVLRK----MRQFQELGHKVVLIIG   73 (343)
T ss_dssp             CCEEEEE-ECTTCCSCBHHHHHHHHH----HHHHHHTTCEEEEEEC
T ss_pred             CCEEEEe-ecCCCCcccHHHHHHHHH----HHHHHHCCCceEEEEe
Confidence            3444433 348996 99999887432    5555667999888764

>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=86.08  E-value=0.33  Score=44.21  Aligned_cols=69  Identities=23%  Similarity=0.370  Sum_probs=45.2

Q ss_pred             CCCCCC-CchHHHHHHHHhhHHHHHHHHCCCcEEeccCCCC--CCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q psy7914         195 PYPSGS-LHMGHVRVYTISDTLARYYAMNGKNVFQPMGWDA--FGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF  268 (365)
Q Consensus       195 PnpnG~-LHiGHar~~v~~DvlaR~lr~~G~~V~~~~g~Dd--~G~~I~~~A~~~g~~~~e~~~~~~~~i~~~l~~l  268 (365)
                      --||++ |||||+....    ..|++...|+.|....|-..  -|.|-.... ++.....+-.+.+...+++++.++
T Consensus        37 ~DPTa~sLHlGhlv~l~----~l~~~q~~Gh~~i~LiG~~T~~IGDPsgk~~-eR~~l~~e~i~~n~~~~~~q~~~~  108 (319)
T d2ts1a_          37 FDPTADSLHIGHLATIL----TMRRFQQAGHRPIALVGGATGLIGDPSGKKS-ERTLNAKETVEAWSARIKEQLGRF  108 (319)
T ss_dssp             ECCSSSSCBGGGHHHHH----HHHHHHHTTCEEEEEECTTGGGTCCCTTCSS-CCCCCCHHHHHHHHHHHHHHHTTS
T ss_pred             ecCCCCcchHHHHHHHH----HHHHHHHcCCceeEEeeehhhccCCCcccch-hhhcCCHHHHHHHHHHHHHHHHHh
Confidence            346777 9999998764    45677789999998888665  244432221 122333555677777788887765

>d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
family: Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
domain: Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
species: Thermus thermophilus [TaxId: 274]

Probab=84.61  E-value=0.062  Score=40.37  Aligned_cols=41  Identities=0%  Similarity=-0.148  Sum_probs=33.1

Q ss_pred             CCCCchhhhccccceEEEecCccccccccccccCcceeEEEccchhh
Q psy7914          80 LPEDTIEDVAKSQGQYITVKSSHILASKTKEKLTENVKHQIENKYKS  126 (365)
Q Consensus        80 t~~p~~~~~~~~~g~f~~l~~~h~l~~~~~a~~~gf~n~~i~n~~~~  126 (365)
                      -++|..|+...    ...+..+..+.+.+++| | |+||++...++.
T Consensus        48 ~k~P~~iA~~I----~~~l~~~~~i~~v~~~g-p-FiNf~l~~~~l~   88 (96)
T d1iq0a3          48 RKPPQAIAQEL----KDRLPLPEFVEEAVPVG-G-YLNFRLRTEALL   88 (96)
T ss_dssp             TSCHHHHHHHH----HHTCCCCTTEEEEEEET-T-EEEEEECHHHHH
T ss_pred             CCCHHHHHHHH----HHHhccCcccceeEeeC-C-eEEEEECHHHHH
Confidence            35899999988    66676666678888888 5 999999998865