Psyllid ID: psy7945

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MLHSAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIKEQTTKLHTGDSDNDLDADDDDKSTTSDDPNFSGDYYNEIIIDPEDEKALSLFMNKHPGPQLTLRDILREKITEKHTELDTQFSDAASVQIDNLDPKIKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQSLLTFAQRYKQDTSAQNRGKPCSIYSGLNPIQPLPWKYDGNFRAPSVEMWN
Secondary Structure (PSIPRED)
cccHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHccccccccccEEEEEccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHcccccccHHHHHHHHHcHccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccEEccc
Coil and Loop (DISEMBL)
MLHSAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIKEQTtklhtgdsdndldaddddksttsddpnfsgdyyneiiidpeDEKALSLfmnkhpgpqltlRDILREKITEKHteldtqfsdaasvqidnldPKIKQMYEGVRDVLSKyrsgklpkafkivpklrNWEQILYVTAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRferedrelpvlWHQSLLTFAQRYKqdtsaqnrgkpcsiysglnpiqplpwkydgnfrapsvemwn
Flexible Loop (DISEMBL)
MLHSAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIKeqttklhtgdsdndldaddddksttsddpnfsgdyYNEIIIDPEDEKALSLFMNKHPGPQLTLRDILREKITEKHteldtqfsdaasvqidnldPKIKQMYEGVRDVLskyrsgklpkafkivpklrnwEQILYVTAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQSLLTFAQRYKQDTSAQNRGKPCSIYSGLNPIQPLPWKYDGNFRAPSVEMWN
Low Complexity Region (SEG)
MLHSAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIKEQTTKLHtgdsdndldaddddksttsddPNFSGDYYNEIIIDPEDEKALSLFMNKHPGPQLTLRDILREKITEKHTELDTQFSDAASVQIDNLDPKIKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQSLLTFAQRYKQDTSAQNRGKPCSIYSGLNPIQPLPWKYDGNFRAPSVEMWN
Disordered region (IsUnstruct)
******ALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIK*********************************DYYNEIIIDPEDEKALSLFMN*****QLTLRDILREKIT*************ASVQIDNLDPKIKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQSLLTFAQRYKQ*********PCSIYSGLNPIQPLPWKYDGNF*********
Disordered Region (DISOPRED)
*LHSAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAI*******************DDDKSTTSDDPNFSGDYYNEIIIDPEDE****************LRDILR***************************KIKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQSLLTFAQRYKQDTSAQNRGKPCSIYSGLNPIQPLPWKYDGNFRAPSVEMWN
Disordered Region (DISEMBL)
MLHSAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIKEQTTKLHTGDSDNDLD***********DPNFSGDYYNEIIIDPEDEKALSLFMNKHPGPQLTLRDILREKITEKHTELDTQFSDAASVQIDNLDPKIKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQSLLTFAQRYK*********KPCSIYSGLNPIQPLPWKYDGNFRAPSVEMWN
Disordered Region (DISPRO)
MLHSAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIKEQTTKLHTG*********DDDKSTTSDDPNFSGDYYNEIIIDPEDEKALSLFMNKHPGPQLTLRDILREKITEKHTELDTQFSDAASVQIDNLDPKIKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQSLLTFAQRYKQDTSAQNRGKPCSIYSGLNPIQPLPWKYDGNFRAPSVEMWN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLHSAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIKEQTTKLHTGDSDNDLDADDDDKSTTSDDPNFSGDYYNEIIIDPEDEKALSLFMNKHPGPQLTLRDILREKITEKHTELDTQFSDAASVQIDNLDPKIKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQSLLTFAQRYKQDTSAQNRGKPCSIYSGLNPIQPLPWKYDGNFRAPSVEMWN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	288	2.2.26 [Sep-21-2011]
O54825	436	Bystin OS=Mus musculus GN	yes	N/A	0.475	0.314	0.485	5e-34
Q5E9N0	435	Bystin OS=Bos taurus GN=B	yes	N/A	0.468	0.310	0.485	3e-33
Q13895	437	Bystin OS=Homo sapiens GN	yes	N/A	0.482	0.318	0.478	4e-33
Q80WL2	436	Bystin OS=Rattus norvegic	yes	N/A	0.475	0.314	0.463	9e-32
P51406	436	Bystin OS=Drosophila mela	yes	N/A	0.246	0.162	0.753	3e-29
A7S7F2	430	Bystin OS=Nematostella ve	N/A	N/A	0.239	0.160	0.688	1e-26
A9UNU6	414	Bystin OS=Monosiga brevic	N/A	N/A	0.270	0.188	0.670	5e-25
Q20932	449	Cell adhesion protein byn	yes	N/A	0.274	0.175	0.592	6e-25
Q54IS0	475	Bystin OS=Dictyostelium d	yes	N/A	0.274	0.166	0.55	7e-21
O60071	449	Uncharacterized protein C	yes	N/A	0.256	0.164	0.558	2e-19

>sp|O54825|BYST_MOUSE Bystin OS=Mus musculus GN=Bysl PE=1 SV=3

 Score =  144 bits (364), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/138 (48%), Positives = 97/138 (70%), Gaps = 1/138 (0%)

Query: 43  KEQTTKLHTGDSDNDLDADDDDKSTTSDDPNFSG-DYYNEIIIDPEDEKALSLFMNKHPG 101
           +E+ T+L  G   +  D +D++  T       +G D+  E+I+DPEDE+A+ +FMNK+P 
Sbjct: 82  RERATRLGPGLPQDGSDEEDEEWPTLEKAAKMAGVDHQAEVIVDPEDERAIEMFMNKNPP 141

Query: 102 PQLTLRDILREKITEKHTELDTQFSDAASVQIDNLDPKIKQMYEGVRDVLSKYRSGKLPK 161
            + TL DI+ EK+TEK TE++T  S+ +   +  LDP++ ++Y GVR+VL KYRSGKLPK
Sbjct: 142 VRRTLADIIMEKLTEKQTEVETVMSEVSGFPMPQLDPRVLEVYRGVREVLCKYRSGKLPK 201

Query: 162 AFKIVPKLRNWEQILYVT 179
           AFK++P L NWEQILYVT
Sbjct: 202 AFKVIPALSNWEQILYVT 219

Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits.
Mus musculus (taxid: 10090)

>sp|Q5E9N0|BYST_BOVIN Bystin OS=Bos taurus GN=BYSL PE=2 SV=1

 Score =  142 bits (357), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/138 (48%), Positives = 98/138 (71%), Gaps = 3/138 (2%)

Query: 43  KEQTTKLHTGDSDNDLDADDDDKSTTSDDPNFSG-DYYNEIIIDPEDEKALSLFMNKHPG 101
           +E+TT+L  G   +   +DD++  T       +G  Y  E+++DPEDE+A+ +FMN++P 
Sbjct: 83  RERTTRLGPGVPQDG--SDDEEWPTLEQAAARAGPGYQAEVVVDPEDERAIEMFMNQNPP 140

Query: 102 PQLTLRDILREKITEKHTELDTQFSDAASVQIDNLDPKIKQMYEGVRDVLSKYRSGKLPK 161
            + TL DI+ EK+TEK TE++T  S+ +   +  LDP++ ++Y GVR+VLSKYRSGKLPK
Sbjct: 141 ARRTLADIIMEKLTEKQTEVETVMSEVSGFPVPQLDPRVLEVYRGVREVLSKYRSGKLPK 200

Query: 162 AFKIVPKLRNWEQILYVT 179
           AFKI+P L NWEQILY+T
Sbjct: 201 AFKIIPALSNWEQILYIT 218

Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits.

Bos taurus (taxid: 9913)

>sp|Q13895|BYST_HUMAN Bystin OS=Homo sapiens GN=BYSL PE=1 SV=3

 Score =  141 bits (356), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 98/140 (70%), Gaps = 1/140 (0%)

Query: 41  AIKEQTTKLHTGDSDNDLDADDDDKSTTSDDPNFSG-DYYNEIIIDPEDEKALSLFMNKH 99
           A +E+TT+L      +  D +D++  T       +   ++ E+++DPEDE+A+ +FMNK+
Sbjct: 81  APRERTTRLGPRMPQDGSDDEDEEWPTLEKAATMTAAGHHAEVVVDPEDERAIEMFMNKN 140

Query: 100 PGPQLTLRDILREKITEKHTELDTQFSDAASVQIDNLDPKIKQMYEGVRDVLSKYRSGKL 159
           P  + TL DI+ EK+TEK TE++T  S+ +   +  LDP++ ++Y GVR+VLSKYRSGKL
Sbjct: 141 PPARRTLADIIMEKLTEKQTEVETVMSEVSGFPMPQLDPRVLEVYRGVREVLSKYRSGKL 200

Query: 160 PKAFKIVPKLRNWEQILYVT 179
           PKAFKI+P L NWEQILYVT
Sbjct: 201 PKAFKIIPALSNWEQILYVT 220

Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits. May be required for trophinin-dependent regulation of cell adhesion during implantation of human embryos.

Homo sapiens (taxid: 9606)

>sp|Q80WL2|BYST_RAT Bystin OS=Rattus norvegicus GN=Bysl PE=2 SV=3

 Score =  137 bits (345), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 64/138 (46%), Positives = 95/138 (68%), Gaps = 1/138 (0%)

Query: 43  KEQTTKLHTGDSDNDLDADDDDKSTTSDDPNFSG-DYYNEIIIDPEDEKALSLFMNKHPG 101
           +E+ T+L  G   +  D +D++  T       +  ++  E+++DPEDE+A+ +FMNK+P 
Sbjct: 82  RERATRLGPGVPQDGSDEEDEEWPTLEKAAKMTVVNHQAEVVVDPEDERAIEMFMNKNPP 141

Query: 102 PQLTLRDILREKITEKHTELDTQFSDAASVQIDNLDPKIKQMYEGVRDVLSKYRSGKLPK 161
            + TL DI+ EK+TEK TE++T  S+ +   +  LDP++ ++Y GVR+VL KYRSG LPK
Sbjct: 142 VRRTLADIIMEKLTEKQTEVETVMSEVSGFPMPQLDPRVLEVYRGVREVLCKYRSGILPK 201

Query: 162 AFKIVPKLRNWEQILYVT 179
           AFKI+P L NWEQILYVT
Sbjct: 202 AFKIIPALSNWEQILYVT 219

Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits.

Rattus norvegicus (taxid: 10116)

>sp|P51406|BYS_DROME Bystin OS=Drosophila melanogaster GN=bys PE=1 SV=2

 Score =  129 bits (323), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/77 (75%), Positives = 66/77 (85%)

Query: 179 TAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQS 238
           ++A LLKI EM Y+GANSIF+R  LDK+YALPYRVVDA VFHFLRFE + RELPVLWHQS
Sbjct: 303 SSACLLKICEMAYSGANSIFIRYFLDKRYALPYRVVDAAVFHFLRFENDKRELPVLWHQS 362

Query: 239 LLTFAQRYKQDTSAQNR 255
           LLTFAQRYK D S++ R
Sbjct: 363 LLTFAQRYKNDISSEQR 379

Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits.

Drosophila melanogaster (taxid: 7227)

>sp|A7S7F2|BYST_NEMVE Bystin OS=Nematostella vectensis GN=bysl PE=3 SV=1

 Score =  120 bits (300), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/77 (68%), Positives = 64/77 (83%)

Query: 179 TAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQS 238
           ++A +LKIAEM Y+GANSIFLR L DKKYALPYRV+DA V+HFLRF  + R LPVLWHQ 
Sbjct: 314 SSAVILKIAEMNYSGANSIFLRTLFDKKYALPYRVIDAAVYHFLRFLTDKRTLPVLWHQC 373

Query: 239 LLTFAQRYKQDTSAQNR 255
           LLTF QRYK+D S++ +
Sbjct: 374 LLTFVQRYKEDISSEQK 390

Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits.

Nematostella vectensis (taxid: 45351)

>sp|A9UNU6|BYST_MONBE Bystin OS=Monosiga brevicollis GN=bysl PE=3 SV=1

 Score =  115 bits (287), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 53/79 (67%), Positives = 65/79 (82%), Gaps = 1/79 (1%)

Query: 179 TAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQS 238
           ++AA+LK+AEM Y+GA SIFLR+LLDKKY+LP+RVVDA+V HF RF  + R+LPVLWHQ 
Sbjct: 298 SSAAMLKMAEMPYSGATSIFLRVLLDKKYSLPFRVVDAVVAHFYRFNADHRQLPVLWHQC 357

Query: 239 LLTFAQRYKQD-TSAQNRG 256
           LL F QRYK+D TS Q R 
Sbjct: 358 LLVFVQRYKEDITSEQKRA 376

Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits.

Monosiga brevicollis (taxid: 81824)

>sp|Q20932|BYN1_CAEEL Cell adhesion protein byn-1 OS=Caenorhabditis elegans GN=byn-1 PE=3 SV=2

 Score =  114 bits (286), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 48/81 (59%), Positives = 65/81 (80%)

Query: 176 LYVTAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLW 235
           ++ +AAA+L+IAEMEY GANS+FLR L+DKKYALPYR VD +V HF+R + ++R++PVLW
Sbjct: 321 IFHSAAAMLRIAEMEYTGANSVFLRALIDKKYALPYRAVDGVVNHFIRLKTDERDMPVLW 380

Query: 236 HQSLLTFAQRYKQDTSAQNRG 256
           HQ LL   QRYK D +A+ + 
Sbjct: 381 HQCLLALCQRYKNDLNAEQKA 401

Caenorhabditis elegans (taxid: 6239)

>sp|Q54IS0|BYST_DICDI Bystin OS=Dictyostelium discoideum GN=bysl PE=3 SV=1

 Score =  101 bits (251), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 63/80 (78%), Gaps = 1/80 (1%)

Query: 179 TAAALLKIAEM-EYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQ 237
           ++ AL+K++++  YNGA S+F+R+L DKKYALPYRV+D +V HF+ F+ E RELPVLWH+
Sbjct: 352 SSVALMKLSQLTRYNGATSMFIRMLCDKKYALPYRVIDGLVDHFVMFDEEVRELPVLWHR 411

Query: 238 SLLTFAQRYKQDTSAQNRGK 257
           +LL+F QRYK D +   + K
Sbjct: 412 ALLSFVQRYKTDITKDQKEK 431

Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits.

Dictyostelium discoideum (taxid: 44689)

>sp|O60071|YBB9_SCHPO Uncharacterized protein C13G1.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC13G1.09 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 63/77 (81%)

Query: 179 TAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQS 238
           +AAALL++ E + +GA S+F+RILLDKKYALPY+V+D++VF+F+R++  +R L VL HQS
Sbjct: 334 SAAALLRLTEFDLSGATSVFIRILLDKKYALPYKVLDSLVFYFMRWKSLERPLAVLEHQS 393

Query: 239 LLTFAQRYKQDTSAQNR 255
           +L FAQRYK D + + +
Sbjct: 394 MLVFAQRYKFDITPEQK 410

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
344249650	271	Bystin [Cricetulus griseus]	0.621	0.660	0.575	1e-58
307176126	434	Bystin [Camponotus floridanus]	0.527	0.350	0.532	1e-35
340712187	430	PREDICTED: bystin-like [Bombus terrestri	0.406	0.272	0.606	1e-35
332020931	434	Bystin [Acromyrmex echinatior]	0.524	0.347	0.538	2e-35
383850214	432	PREDICTED: bystin-like [Megachile rotund	0.420	0.280	0.603	2e-35
239790449	422	ACYPI001328 [Acyrthosiphon pisum]	0.555	0.379	0.464	4e-34
193631851	422	PREDICTED: bystin-like [Acyrthosiphon pi	0.555	0.379	0.464	4e-34
357624811	426	bystin [Danaus plexippus]	0.531	0.359	0.479	8e-34
332376039	428	unknown [Dendroctonus ponderosae]	0.447	0.301	0.528	2e-33
149732524	437	PREDICTED: bystin [Equus caballus]	0.486	0.320	0.496	2e-33

>gi|344249650|gb|EGW05754.1| Bystin [Cricetulus griseus]

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 111/193 (57%), Positives = 143/193 (74%), Gaps = 14/193 (7%)

Query: 77  DYYNEIIIDPEDEKALSLFMNKHPGPQLTLRDILREKITEKHTELDTQFSDAASVQIDNL 136
           D+  E+++DP+DE+A+ +FM K+P  + TL DI+ EK+TEK  E++T  SD +   +  L
Sbjct: 20  DHQAEVVVDPDDERAIEMFMKKNPPTRHTLADIIMEKLTEKQREVETVMSDVSGFPMPQL 79

Query: 137 DPKIKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILY--------------VTAAA 182
           DP++ ++Y GVR+VLSKYRSGKLPKAFKI+P L NWEQILY               T+AA
Sbjct: 80  DPRVLEVYRGVREVLSKYRSGKLPKAFKIIPALSNWEQILYFTEPEAWTAAAMYQATSAA 139

Query: 183 LLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQSLLTF 242
           +LKIAEMEY+GANSIFLR+LLDKKYALPYRV+DA+V+HFL F  E R+LPVLWHQ LLT 
Sbjct: 140 MLKIAEMEYSGANSIFLRLLLDKKYALPYRVLDALVYHFLGFWTEKRQLPVLWHQCLLTL 199

Query: 243 AQRYKQDTSAQNR 255
           AQ YK D +   +
Sbjct: 200 AQGYKADLATDQK 212

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|307176126|gb|EFN65824.1| Bystin [Camponotus floridanus]

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/154 (53%), Positives = 107/154 (69%), Gaps = 2/154 (1%)

Query: 61  DDDDKSTTSDDPNFSGDYYNEIIIDPEDEKALSLFMNKHPGPQLTLRDILREKITEKHTE 120
           D +D+S+  ++P  +  YY +I I+ +DE+AL +FM+K P P  TL DI+ EK+TEK TE
Sbjct: 92  DVEDRSSDDEEPVDNVHYYEDIQINEDDERALQMFMSKDPVPTRTLADIIMEKLTEKKTE 151

Query: 121 LDTQFSDAASVQIDNLDPKIKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTA 180
           ++TQFSDA ++Q+ +LDP++K MYEGVRDVL KYRSGKLPKAFKIVP L+NWEQILY+T 
Sbjct: 152 IETQFSDAGTIQLQDLDPRVKAMYEGVRDVLVKYRSGKLPKAFKIVPSLKNWEQILYITD 211

Query: 181 AALLKIAEMEYNGANSIFLRILLDKKYALPYRVV 214
                 A M    A  IF   L DK     Y +V
Sbjct: 212 PPKWSAAAM--YQATRIFASNLKDKMAQRFYNLV 243

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712187|ref|XP_003394645.1| PREDICTED: bystin-like [Bombus terrestris]

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/117 (60%), Positives = 91/117 (77%)

Query: 63  DDKSTTSDDPNFSGDYYNEIIIDPEDEKALSLFMNKHPGPQLTLRDILREKITEKHTELD 122
           D +  +S+D   +  YY  I I+ EDE+A+ +FM+K   P  TL DI+ EK+TEK TE++
Sbjct: 93  DSEEVSSEDEQDTAQYYEHIEINEEDERAIQMFMSKDAAPTKTLADIILEKLTEKKTEIE 152

Query: 123 TQFSDAASVQIDNLDPKIKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVT 179
           TQFSDA S+Q+  LDP++K MYEGVRDVL+KYRSGKLPKAFKIVP L+NWEQILY+T
Sbjct: 153 TQFSDAGSIQMQELDPRVKAMYEGVRDVLTKYRSGKLPKAFKIVPNLKNWEQILYIT 209

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020931|gb|EGI61325.1| Bystin [Acromyrmex echinatior]

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/154 (53%), Positives = 106/154 (68%), Gaps = 3/154 (1%)

Query: 61  DDDDKSTTSDDPNFSGDYYNEIIIDPEDEKALSLFMNKHPGPQLTLRDILREKITEKHTE 120
           D++D+S+   +P     YY  I ID +DE+AL +FM+K   P  TL DI+ EK+TEK TE
Sbjct: 93  DEEDQSSDDGEP-VEDVYYENINIDEDDERALQMFMSKDAAPMRTLADIIMEKLTEKKTE 151

Query: 121 LDTQFSDAASVQIDNLDPKIKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTA 180
           +DTQFSDA ++Q+ +LDP++K MYEGVRDVL+KYRSGKLPKAFK+VP L+NWEQILY+T 
Sbjct: 152 IDTQFSDAGTIQLQDLDPRVKAMYEGVRDVLAKYRSGKLPKAFKLVPTLKNWEQILYITD 211

Query: 181 AALLKIAEMEYNGANSIFLRILLDKKYALPYRVV 214
                 A M Y G   IF   L DK     Y +V
Sbjct: 212 PTKWSAAAM-YQGTR-IFASNLKDKMAQRFYNLV 243

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850214|ref|XP_003700691.1| PREDICTED: bystin-like [Megachile rotundata]

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/121 (60%), Positives = 92/121 (76%)

Query: 59  DADDDDKSTTSDDPNFSGDYYNEIIIDPEDEKALSLFMNKHPGPQLTLRDILREKITEKH 118
           D   D +  +S+D      +Y +I I+ EDE+A+ +FM+K P P  TL DI+ EK+TEK 
Sbjct: 91  DEFSDTEEQSSEDELDDSQFYEDIQINEEDERAIEMFMSKDPAPMKTLADIILEKLTEKK 150

Query: 119 TELDTQFSDAASVQIDNLDPKIKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYV 178
           TE++TQFSD  S+Q+  LDP++K MYEGVRDVLSKYRSGKLPKAFKIVP LRNWEQILY+
Sbjct: 151 TEIETQFSDVGSMQMQELDPRVKTMYEGVRDVLSKYRSGKLPKAFKIVPSLRNWEQILYI 210

Query: 179 T 179
           T
Sbjct: 211 T 211

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239790449|dbj|BAH71785.1| ACYPI001328 [Acyrthosiphon pisum]

 Score =  151 bits (381), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 112/170 (65%), Gaps = 10/170 (5%)

Query: 34  LPYRVVDAIKEQTTKLHTGDSDN-----DLDADDDDKSTTSDDPNFSG----DYYNEIII 84
           L  R++D ++EQ  ++   +  N      L +  D +    + P F      DYY ++ I
Sbjct: 53  LSRRILDQVREQKQEIAESEGTNKNLLTSLGSGSDSEEDEEEKPMFGEGEDEDYYEQLEI 112

Query: 85  DPEDEKALSLFMNKHPGPQLTLRDILREKITEKHTELDTQFSDAASVQIDNLDPKIKQMY 144
           + +DEKAL +FM+K P  +LTL D++ EKITEK TE+ TQF+DA SVQ+ ++DP++ QMY
Sbjct: 113 NADDEKALEMFMSKKPEARLTLADMILEKITEKQTEIQTQFTDAESVQLQDVDPRVIQMY 172

Query: 145 EGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTAAALLKIAEMEYNGA 194
           +GV+ VL+ YRSGKLPKAFK++PKLRNWEQILY+T  +    A M Y G 
Sbjct: 173 KGVKQVLTTYRSGKLPKAFKLIPKLRNWEQILYITEPSTWSAAAM-YQGV 221

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193631851|ref|XP_001944953.1| PREDICTED: bystin-like [Acyrthosiphon pisum]

 Score =  151 bits (381), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 112/170 (65%), Gaps = 10/170 (5%)

Query: 34  LPYRVVDAIKEQTTKLHTGDSDN-----DLDADDDDKSTTSDDPNFSG----DYYNEIII 84
           L  R++D ++EQ  ++   +  N      L +  D +    + P F      DYY ++ I
Sbjct: 53  LSRRILDQVREQKQEITESEGTNKNLLTSLGSGSDSEEDEEEKPMFGEGEDEDYYEQLEI 112

Query: 85  DPEDEKALSLFMNKHPGPQLTLRDILREKITEKHTELDTQFSDAASVQIDNLDPKIKQMY 144
           + +DEKAL +FM+K P  +LTL D++ EKITEK TE+ TQF+DA SVQ+ ++DP++ QMY
Sbjct: 113 NADDEKALEMFMSKKPEARLTLADMILEKITEKQTEIQTQFTDAESVQLQDVDPRVIQMY 172

Query: 145 EGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTAAALLKIAEMEYNGA 194
           +GV+ VL+ YRSGKLPKAFK++PKLRNWEQILY+T  +    A M Y G 
Sbjct: 173 KGVKQVLTTYRSGKLPKAFKLIPKLRNWEQILYITEPSTWSAAAM-YQGV 221

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357624811|gb|EHJ75443.1| bystin [Danaus plexippus]

 Score =  150 bits (378), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 80/167 (47%), Positives = 109/167 (65%), Gaps = 14/167 (8%)

Query: 34  LPYRVVDAIKEQTTKLHTGDSD----------NDLDADDDDKSTTSD-DPNFSGDYYNEI 82
           L  +++ A ++Q T+L  G +           ND  +D DD S   D +P+    YY+ I
Sbjct: 51  LSKKILKAARKQQTELTDGVASVSASLTSTIFNDSTSDPDDGSEKDDLEPD---TYYDTI 107

Query: 83  IIDPEDEKALSLFMNKHPGPQLTLRDILREKITEKHTELDTQFSDAASVQIDNLDPKIKQ 142
            I+ +DE+AL +FMN  PG   TL DI+++KIT K TE+ TQFSD  ++++ N+DP+IK 
Sbjct: 108 EINEDDEEALKMFMNAKPGKTRTLADIIKDKITNKQTEILTQFSDVETLKLQNIDPRIKS 167

Query: 143 MYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTAAALLKIAEM 189
           MYEGVRDVL KYRSGKLPKAFK++P L+NWEQILY+T       A M
Sbjct: 168 MYEGVRDVLKKYRSGKLPKAFKMIPHLQNWEQILYITEPTTWSAAAM 214

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376039|gb|AEE63160.1| unknown [Dendroctonus ponderosae]

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/142 (52%), Positives = 96/142 (67%), Gaps = 13/142 (9%)

Query: 53  DSDNDLDADDDDKSTTSDDPNFSGDYYNEIIIDPEDEKALSLFMNKHPGPQLTLRDILRE 112
           +SD +LD+   D             +Y ++ ++ +DEKA+ LFM+K+P PQ TL DI+ E
Sbjct: 92  ESDEELDSQPTDT------------FYEDVQVNEDDEKAMQLFMSKNPVPQRTLADIILE 139

Query: 113 KITEKHTELDTQFSDAASVQIDNLDPKIKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNW 172
           KITE+ TELDTQFSDA  +QI N+DPK+  +YEGVRDVL  YRSGKLPKAFKI+P L NW
Sbjct: 140 KITERQTELDTQFSDAGEIQIQNVDPKLTTLYEGVRDVLKIYRSGKLPKAFKIIPTLLNW 199

Query: 173 EQILYVTAAALLKIAEMEYNGA 194
           EQ+LY+T       A M Y G 
Sbjct: 200 EQMLYITEPQCWSAASM-YQGT 220

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149732524|ref|XP_001501285.1| PREDICTED: bystin [Equus caballus]

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/141 (49%), Positives = 100/141 (70%), Gaps = 1/141 (0%)

Query: 40  DAIKEQTTKLHTGDSDNDLDADDDDKSTTSDDPNFSG-DYYNEIIIDPEDEKALSLFMNK 98
            A +E+TT+L  G   +  D +D++  T       +G  ++ E+I+DPEDE+A+ +FMNK
Sbjct: 80  SAPRERTTRLGPGVPQDGSDDEDEEWPTLEKAATMTGAGHHAEVIVDPEDERAMEMFMNK 139

Query: 99  HPGPQLTLRDILREKITEKHTELDTQFSDAASVQIDNLDPKIKQMYEGVRDVLSKYRSGK 158
           +P  + TL DI+ EK+TEK TE++T  S+ +   +  LDP++ ++Y GVR+VLSKYRSGK
Sbjct: 140 NPPARRTLADIIMEKLTEKQTEVETVMSEVSGFPMPQLDPRVLEVYRGVREVLSKYRSGK 199

Query: 159 LPKAFKIVPKLRNWEQILYVT 179
           LPKAFKI+P L NWEQILYVT
Sbjct: 200 LPKAFKIIPALSNWEQILYVT 220

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
UNIPROTKB|F1RUW0	433	BYSL "Uncharacterized protein"	0.267	0.177	0.753	4.8e-52
WB|WBGene00000276	449	byn-1 [Caenorhabditis elegans	0.277	0.178	0.6	6e-45
POMBASE|SPBC13G1.09	449	SPBC13G1.09 "bystin family U3	0.267	0.171	0.558	4.2e-35
DICTYBASE|DDB_G0288565	475	bysl "bystin" [Dictyostelium d	0.274	0.166	0.55	6.1e-35
UNIPROTKB|Q13895	437	BYSL "Bystin" [Homo sapiens (t	0.468	0.308	0.496	4.2e-31
UNIPROTKB|Q5E9N0	435	BYSL "Bystin" [Bos taurus (tax	0.468	0.310	0.489	5.4e-31
MGI|MGI:1858419	436	Bysl "bystin-like" [Mus muscul	0.472	0.311	0.492	8.8e-31
RGD|727959	436	Bysl "bystin-like" [Rattus nor	0.458	0.302	0.492	2.1e-29
UNIPROTKB|F1NPV8	417	BYSL "Uncharacterized protein"	0.458	0.316	0.492	1.9e-28
FB|FBgn0010292	436	bys "by S6" [Drosophila melano	0.267	0.176	0.753	1.7e-27

UNIPROTKB|F1RUW0 BYSL "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 310 (114.2 bits), Expect = 4.8e-52, Sum P(2) = 4.8e-52
 Identities = 58/77 (75%), Positives = 67/77 (87%)

Query:   179 TAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQS 238
             T+AA+LKIAEMEY+GANSIFLR+LLDKKYALPYRV+DA+VFHFLRF  E RELPVLWHQ 
Sbjct:   318 TSAAMLKIAEMEYSGANSIFLRLLLDKKYALPYRVLDALVFHFLRFRTEKRELPVLWHQC 377

Query:   239 LLTFAQRYKQDTSAQNR 255
             LLT  QRYK D + + +
Sbjct:   378 LLTLVQRYKADLATEQK 394

GO:0005730 "nucleolus" evidence=IEA

WB|WBGene00000276 byn-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 276 (102.2 bits), Expect = 6.0e-45, Sum P(2) = 6.0e-45
 Identities = 48/80 (60%), Positives = 65/80 (81%)

Query:   176 LYVTAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLW 235
             ++ +AAA+L+IAEMEY GANS+FLR L+DKKYALPYR VD +V HF+R + ++R++PVLW
Sbjct:   321 IFHSAAAMLRIAEMEYTGANSVFLRALIDKKYALPYRAVDGVVNHFIRLKTDERDMPVLW 380

Query:   236 HQSLLTFAQRYKQDTSAQNR 255
             HQ LL   QRYK D +A+ +
Sbjct:   381 HQCLLALCQRYKNDLNAEQK 400

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0007276 "gamete generation" evidence=IMP

POMBASE|SPBC13G1.09 SPBC13G1.09 "bystin family U3 and U14 snoRNA associated protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 233 (87.1 bits), Expect = 4.2e-35, Sum P(2) = 4.2e-35
 Identities = 43/77 (55%), Positives = 63/77 (81%)

Query:   179 TAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQS 238
             +AAALL++ E + +GA S+F+RILLDKKYALPY+V+D++VF+F+R++  +R L VL HQS
Sbjct:   334 SAAALLRLTEFDLSGATSVFIRILLDKKYALPYKVLDSLVFYFMRWKSLERPLAVLEHQS 393

Query:   239 LLTFAQRYKQDTSAQNR 255
             +L FAQRYK D + + +
Sbjct:   394 MLVFAQRYKFDITPEQK 410

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO

GO:0006364 "rRNA processing" evidence=ISO

GO:0030515 "snoRNA binding" evidence=ISO

DICTYBASE|DDB_G0288565 bysl "bystin" [Dictyostelium discoideum (taxid:44689)]

 Score = 246 (91.7 bits), Expect = 6.1e-35, Sum P(2) = 6.1e-35
 Identities = 44/80 (55%), Positives = 63/80 (78%)

Query:   179 TAAALLKIAEM-EYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQ 237
             ++ AL+K++++  YNGA S+F+R+L DKKYALPYRV+D +V HF+ F+ E RELPVLWH+
Sbjct:   352 SSVALMKLSQLTRYNGATSMFIRMLCDKKYALPYRVIDGLVDHFVMFDEEVRELPVLWHR 411

Query:   238 SLLTFAQRYKQDTSAQNRGK 257
             +LL+F QRYK D +   + K
Sbjct:   412 ALLSFVQRYKTDITKDQKEK 431

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q13895 BYSL "Bystin" [Homo sapiens (taxid:9606)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 68/137 (49%), Positives = 94/137 (68%)

Query:    78 YYNEIIIDPEDEKALSLFMNKHPGPQLTLRDILREKITEKHTELDTQFSDAASVQIDNLD 137
             ++ E+++DPEDE+A+ +FMNK+P  + TL DI+ EK+TEK TE++T  S+ +   +  LD
Sbjct:   119 HHAEVVVDPEDERAIEMFMNKNPPARRTLADIIMEKLTEKQTEVETVMSEVSGFPMPQLD 178

Query:   138 PKIKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTAAALLKIAEMEYNGANSI 197
             P++ ++Y GVR+VLSKYRSGKLPKAFKI+P L NWEQILYVT       A M Y  A  I
Sbjct:   179 PRVLEVYRGVREVLSKYRSGKLPKAFKIIPALSNWEQILYVTEPEAWTAAAM-YQ-ATRI 236

Query:   198 FLRILLDKKYALPYRVV 214
             F   L ++     Y +V
Sbjct:   237 FASNLKERMAQRFYNLV 253

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007155 "cell adhesion" evidence=TAS

GO:0007565 "female pregnancy" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|Q5E9N0 BYSL "Bystin" [Bos taurus (taxid:9913)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 67/137 (48%), Positives = 93/137 (67%)

Query:    78 YYNEIIIDPEDEKALSLFMNKHPGPQLTLRDILREKITEKHTELDTQFSDAASVQIDNLD 137
             Y  E+++DPEDE+A+ +FMN++P  + TL DI+ EK+TEK TE++T  S+ +   +  LD
Sbjct:   117 YQAEVVVDPEDERAIEMFMNQNPPARRTLADIIMEKLTEKQTEVETVMSEVSGFPVPQLD 176

Query:   138 PKIKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTAAALLKIAEMEYNGANSI 197
             P++ ++Y GVR+VLSKYRSGKLPKAFKI+P L NWEQILY+T       A M Y  A  I
Sbjct:   177 PRVLEVYRGVREVLSKYRSGKLPKAFKIIPALSNWEQILYITEPEAWTAAAM-YQ-ATRI 234

Query:   198 FLRILLDKKYALPYRVV 214
             F   L ++     Y +V
Sbjct:   235 FASNLKERMAQRFYNLV 251

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

MGI|MGI:1858419 Bysl "bystin-like" [Mus musculus (taxid:10090)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 68/138 (49%), Positives = 93/138 (67%)

Query:    77 DYYNEIIIDPEDEKALSLFMNKHPGPQLTLRDILREKITEKHTELDTQFSDAASVQIDNL 136
             D+  E+I+DPEDE+A+ +FMNK+P  + TL DI+ EK+TEK TE++T  S+ +   +  L
Sbjct:   117 DHQAEVIVDPEDERAIEMFMNKNPPVRRTLADIIMEKLTEKQTEVETVMSEVSGFPMPQL 176

Query:   137 DPKIKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTAAALLKIAEMEYNGANS 196
             DP++ ++Y GVR+VL KYRSGKLPKAFK++P L NWEQILYVT       A M Y  A  
Sbjct:   177 DPRVLEVYRGVREVLCKYRSGKLPKAFKVIPALSNWEQILYVTEPEAWTAAAM-YQ-ATR 234

Query:   197 IFLRILLDKKYALPYRVV 214
             IF   L ++     Y +V
Sbjct:   235 IFASNLKERMAQRFYNLV 252

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001825 "blastocyst formation" evidence=IMP

GO:0001829 "trophectodermal cell differentiation" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007155 "cell adhesion" evidence=ISS

GO:0008283 "cell proliferation" evidence=IMP

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0045177 "apical part of cell" evidence=IDA

RGD|727959 Bysl "bystin-like" [Rattus norvegicus (taxid:10116)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 66/134 (49%), Positives = 90/134 (67%)

Query:    81 EIIIDPEDEKALSLFMNKHPGPQLTLRDILREKITEKHTELDTQFSDAASVQIDNLDPKI 140
             E+++DPEDE+A+ +FMNK+P  + TL DI+ EK+TEK TE++T  S+ +   +  LDP++
Sbjct:   121 EVVVDPEDERAIEMFMNKNPPVRRTLADIIMEKLTEKQTEVETVMSEVSGFPMPQLDPRV 180

Query:   141 KQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTAAALLKIAEMEYNGANSIFLR 200
              ++Y GVR+VL KYRSG LPKAFKI+P L NWEQILYVT       A M Y  A  IF  
Sbjct:   181 LEVYRGVREVLCKYRSGILPKAFKIIPALSNWEQILYVTEPEAWTAAAM-YQ-ATRIFAS 238

Query:   201 ILLDKKYALPYRVV 214
              L ++     Y +V
Sbjct:   239 NLKERMAQRFYNLV 252

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001825 "blastocyst formation" evidence=ISO

GO:0001829 "trophectodermal cell differentiation" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005881 "cytoplasmic microtubule" evidence=IDA

GO:0007420 "brain development" evidence=IEP

GO:0008283 "cell proliferation" evidence=ISO

GO:0030182 "neuron differentiation" evidence=IEP

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0042995 "cell projection" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0045177 "apical part of cell" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEP

GO:0071347 "cellular response to interleukin-1" evidence=IEP

GO:0071363 "cellular response to growth factor stimulus" evidence=IEP

GO:0071407 "cellular response to organic cyclic compound" evidence=IEP

UNIPROTKB|F1NPV8 BYSL "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 66/134 (49%), Positives = 89/134 (66%)

Query:    81 EIIIDPEDEKALSLFMNKHPGPQLTLRDILREKITEKHTELDTQFSDAASVQIDNLDPKI 140
             ++ +DPEDEKAL +FM++ P  + TL D++ EKITEK TE+ T  S+ +   +  LDP++
Sbjct:    99 DVEVDPEDEKALEVFMSRAPPLRRTLADVIMEKITEKQTEVQTALSELSGRPMPQLDPRV 158

Query:   141 KQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVTAAALLKIAEMEYNGANSIFLR 200
              ++Y GVR+VLSKYRSGKLPKAFKI+P L NWEQILY+T       A M Y  A  IF  
Sbjct:   159 LEVYRGVREVLSKYRSGKLPKAFKIIPALSNWEQILYITEPETWTAAAM-YQ-ATRIFSS 216

Query:   201 ILLDKKYALPYRVV 214
              L ++     Y +V
Sbjct:   217 NLKERMAQRFYNLV 230

GO:0005730 "nucleolus" evidence=IEA

FB|FBgn0010292 bys "by S6" [Drosophila melanogaster (taxid:7227)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 58/77 (75%), Positives = 66/77 (85%)

Query:   179 TAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQS 238
             ++A LLKI EM Y+GANSIF+R  LDK+YALPYRVVDA VFHFLRFE + RELPVLWHQS
Sbjct:   303 SSACLLKICEMAYSGANSIFIRYFLDKRYALPYRVVDAAVFHFLRFENDKRELPVLWHQS 362

Query:   239 LLTFAQRYKQDTSAQNR 255
             LLTFAQRYK D S++ R
Sbjct:   363 LLTFAQRYKNDISSEQR 379

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	288
pfam05291	303	pfam05291, Bystin, Bystin	6e-42
pfam05291	303	pfam05291, Bystin, Bystin	3e-29
pfam05291	303	pfam05291, Bystin, Bystin	2e-19

>gnl|CDD|218540 pfam05291, Bystin, Bystin

 Score =  145 bits (369), Expect = 6e-42
 Identities = 58/71 (81%), Positives = 67/71 (94%)

Query: 179 TAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQS 238
           ++AALLK+AEM+YNGA S+F+R+LLDKKYALPYRVVDA+VFHFLRFE E+R LPVLWHQS
Sbjct: 189 SSAALLKLAEMDYNGATSVFIRVLLDKKYALPYRVVDALVFHFLRFENEERVLPVLWHQS 248

Query: 239 LLTFAQRYKQD 249
           LLTFAQRYK D
Sbjct: 249 LLTFAQRYKND 259

Trophinin and tastin form a cell adhesion molecule complex that potentially mediates an initial attachment of the blastocyst to uterine epithelial cells at the time of implantation. Trophinin and tastin bind to an intermediary cytoplasmic protein called bystin. Bystin may be involved in implantation and trophoblast invasion because bystin is found with trophinin and tastin in the cells at human implantation sites and also in the intermediate trophoblasts at invasion front in the placenta from early pregnancy. This family also includes the yeast protein ENP1. ENP1 is an essential protein in Saccharomyces cerevisiae and is localised in the nucleus. It is thought that ENP1 plays a direct role in the early steps of rRNA processing as enp1 defective yeast cannot synthesise 20S pre-rRNA and hence 18S rRNA, which leads to reduced formation of 40S ribosomal subunits. Length = 303

>gnl|CDD|218540 pfam05291, Bystin, Bystin

 Score =  112 bits (282), Expect = 3e-29
 Identities = 45/87 (51%), Positives = 55/87 (63%), Gaps = 2/87 (2%)

Query: 95  FMNKHPGPQLTLRDILREKITEKHTELDTQFSDAASVQI--DNLDPKIKQMYEGVRDVLS 152
           FMNK  G   TL DI+ EKI EK         D          LDPK+ ++YE V ++LS
Sbjct: 1   FMNKDDGGTRTLADIIMEKIQEKEASGQGAGRDEEGNPSPEIKLDPKVIEVYEKVGELLS 60

Query: 153 KYRSGKLPKAFKIVPKLRNWEQILYVT 179
           +Y+SGKLPKAFKI+PKL NWE ILY+T
Sbjct: 61  RYKSGKLPKAFKIIPKLSNWEDILYLT 87

Trophinin and tastin form a cell adhesion molecule complex that potentially mediates an initial attachment of the blastocyst to uterine epithelial cells at the time of implantation. Trophinin and tastin bind to an intermediary cytoplasmic protein called bystin. Bystin may be involved in implantation and trophoblast invasion because bystin is found with trophinin and tastin in the cells at human implantation sites and also in the intermediate trophoblasts at invasion front in the placenta from early pregnancy. This family also includes the yeast protein ENP1. ENP1 is an essential protein in Saccharomyces cerevisiae and is localised in the nucleus. It is thought that ENP1 plays a direct role in the early steps of rRNA processing as enp1 defective yeast cannot synthesise 20S pre-rRNA and hence 18S rRNA, which leads to reduced formation of 40S ribosomal subunits. Length = 303

>gnl|CDD|218540 pfam05291, Bystin, Bystin

 Score = 86.2 bits (214), Expect = 2e-19
 Identities = 33/41 (80%), Positives = 40/41 (97%)

Query: 1   MLHSAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDA 41
           +LHS+AALLK+AEM+YNGA S+F+R+LLDKKYALPYRVVDA
Sbjct: 186 VLHSSAALLKLAEMDYNGATSVFIRVLLDKKYALPYRVVDA 226

Trophinin and tastin form a cell adhesion molecule complex that potentially mediates an initial attachment of the blastocyst to uterine epithelial cells at the time of implantation. Trophinin and tastin bind to an intermediary cytoplasmic protein called bystin. Bystin may be involved in implantation and trophoblast invasion because bystin is found with trophinin and tastin in the cells at human implantation sites and also in the intermediate trophoblasts at invasion front in the placenta from early pregnancy. This family also includes the yeast protein ENP1. ENP1 is an essential protein in Saccharomyces cerevisiae and is localised in the nucleus. It is thought that ENP1 plays a direct role in the early steps of rRNA processing as enp1 defective yeast cannot synthesise 20S pre-rRNA and hence 18S rRNA, which leads to reduced formation of 40S ribosomal subunits. Length = 303

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	288
KOG3871|consensus	449		100.0
PF05291	301	Bystin: Bystin; InterPro: IPR007955 Trophinin and	100.0
KOG3871|consensus	449		99.8
PF05291	301	Bystin: Bystin; InterPro: IPR007955 Trophinin and	99.73
PF11510	263	FA_FANCE: Fanconi Anaemia group E protein FANCE; I	80.27

>KOG3871|consensus

Probab=100.00  E-value=4.1e-79  Score=581.74  Aligned_cols=230  Identities=48%  Similarity=0.766  Sum_probs=203.1

Q ss_pred             hhccccCCCCCCCCCCCc---CCCCCCCCCCCCCCCcccccccCHHhHHHHHHhhcCCCCCCcchHHHHHHHhhhhhhhh
Q psy7945          45 QTTKLHTGDSDNDLDADD---DDKSTTSDDPNFSGDYYNEIIIDPEDEKALSLFMNKHPGPQLTLRDILREKITEKHTEL  121 (288)
Q Consensus        45 ~FtKf~~~~~~~~~~ded---eE~P~~~~~~e~e~~~~~e~eid~eDe~~l~~Fm~~~~~~~~tLaDiI~eKi~ek~~~~  121 (288)
                      .+.+++..+-+++.+.++   |+...+....+..+.+++.+|||++|++.+++|++++++..+||+||||+||+|||+++
T Consensus        83 ~~~~~~~~~~~ee~~i~~~~eddi~D~~~~~d~~~eed~~~Eide~d~~~f~r~l~k~a~~~~tL~diIm~ki~ekead~  162 (449)
T KOG3871|consen   83 FEARFTTASYGEEDEIEEEDEDDIDDFEMEEDDKEEEDEIVEIDEEDAALFERFLKKSADFNYTLADIIMAKIREKEADV  162 (449)
T ss_pred             hhhhccccccccccccccchhcccccccccccchhhhhhhhhcCcchHHHHHHHhccccchhccHHHHHHHHHHHHHhhH
Confidence            344555554443333222   22333333334444455679999999999999999999999999999999999999999


Q ss_pred             hcccc--cccccccCCCChHHHHHHHHHHHHHhhcccCCCCCceeeccCCCCHHHHHHHH--------------------
Q psy7945         122 DTQFS--DAASVQIDNLDPKIKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWEQILYVT--------------------  179 (288)
Q Consensus       122 ~~~~~--~~~~~~~~~l~pkVvevY~~vG~~Ls~YrSGklPKafKiiP~l~nWeeiL~lT--------------------  179 (288)
                      .+.++  +.++.+++.|||||+++|++||.+||+||||||||||||||+|.|||+|||||                    
T Consensus       163 ~~~~~~~~~~e~~~~~ldpkV~e~Y~~Vg~~lskyrsGKlPKaFKiIp~l~nWediLylT~Pe~Ws~~amyqaTRiF~Sn  242 (449)
T KOG3871|consen  163 ETEQSDPDENEFPMPALDPKVIEMYEGVGSVLSKYRSGKLPKAFKIIPSLRNWEDILYLTEPEEWSPAAMYQATRIFASN  242 (449)
T ss_pred             HhhhcccccccCCCCCCCHHHHHHHHHHHHHHHHhhcCCCchhhhcccccccHhHheeecCccccCHHHHHHHHHHHHhc
Confidence            88776  55667889999999999999999999999999999999999999999999999                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy7945         180 --------------------------------------------------------------------------------  179 (288)
Q Consensus       180 --------------------------------------------------------------------------------  179 (288)
                                                                                                      
T Consensus       243 L~~~~~QrFynlvLLpRvRddi~e~kkLnyhLY~AlkKaLyKPsAffkG~l~PL~esgtCtlREAvI~gSvl~K~siPvl  322 (449)
T KOG3871|consen  243 LKPKMAQRFYNLVLLPRVRDDIREYKKLNYHLYQALKKALYKPSAFFKGILFPLVESGTCTLREAVIIGSVLAKVSIPVL  322 (449)
T ss_pred             CCHHHHHHHHHHhhhHHHHHHHHHHhhhhHHHHHHHHHHhcCcHHHhccchhhhccCCCchHHHHHHHHHHHhhCcchhH
Confidence                                                                                            


Q ss_pred             --HHHHHHHhcccCCchHHHHHHHHHhhccCChHHHHHHHHHHhHhccccCCCCchHHHHHHHHHHHHhcccCChhhHhh
Q psy7945         180 --AAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQSLLTFAQRYKQDTSAQNRGK  257 (288)
Q Consensus       180 --aaaLlkl~e~~y~g~~S~flr~LldKKYaLP~rvidalV~hF~rF~~~~~~LPVlWHQsLL~FvqrYk~dl~~eqke~  257 (288)
                        ||||++||+|+|||+||+|||+||||||||||||+|+||+|||||++++|.||||||||||+||||||+||+.|||++
T Consensus       323 HSsaallrl~em~ysgatSvFir~lLdKKYalPYrvvD~~V~hFmrf~~d~R~lpVlwHqslLtf~QRYK~di~~eqkda  402 (449)
T KOG3871|consen  323 HSSAALLRLAEMDYSGATSVFIRILLDKKYALPYRVVDALVFHFMRFRTDERVLPVLWHQSLLTFAQRYKNDITQEQKDA  402 (449)
T ss_pred             hHHHHHHHHHhcccCCcchHHHHHHhhhhccchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhhcCHHHHHH
Confidence              799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHhccCCCCCCCCCc
Q psy7945         258 PCSIYSGLNPIQPLPWK  274 (288)
Q Consensus       258 L~~Llk~~~~~~~~p~~  274 (288)
                      |++|+|.|.|+.++|+-
T Consensus       403 Llellr~~~H~~i~PEI  419 (449)
T KOG3871|consen  403 LLELLRLQGHYLIGPEI  419 (449)
T ss_pred             HHHHHHhcCCCcCCHHH
Confidence            99999999999999974

>PF05291 Bystin: Bystin; InterPro: IPR007955 Trophinin and tastin form a cell adhesion molecule complex that potentially mediates an initial attachment of the blastocyst to uterine epithelial cells at the time of implantation

Probab=100.00  E-value=2.9e-73  Score=531.58  Aligned_cols=180  Identities=58%  Similarity=0.938  Sum_probs=172.8

Q ss_pred             hhcCCCCCCcchHHHHHHHhhhhhhhhhccccccccccc-CCCChHHHHHHHHHHHHHhhcccCCCCCceeeccCCCCHH
Q psy7945          95 FMNKHPGPQLTLRDILREKITEKHTELDTQFSDAASVQI-DNLDPKIKQMYEGVRDVLSKYRSGKLPKAFKIVPKLRNWE  173 (288)
Q Consensus        95 Fm~~~~~~~~tLaDiI~eKi~ek~~~~~~~~~~~~~~~~-~~l~pkVvevY~~vG~~Ls~YrSGklPKafKiiP~l~nWe  173 (288)
                      ||++++++++||||+||+||+|++++.+++.++.++.+. ..+||||++||++||.+||+||||||||||||||+|+|||
T Consensus         1 fm~~~~~~~~~Lad~I~~Ki~e~e~~~~~~~~~~~~~~~~~~l~~kVvevY~~vG~~Ls~YrSGkLPKafKiiP~l~nWE   80 (301)
T PF05291_consen    1 FMNEEAGQRRTLADIIMEKIKEKEAEQQGQQSDEEGKPEPEELDPKVVEVYTKVGELLSRYRSGKLPKAFKIIPSLPNWE   80 (301)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHhHhhhccccCccCCCCCcccCCHHHHHHHHHHHHHHhhcCCCCCCcCeecccCchhHH
Confidence            899999999999999999999999998776665555554 4899999999999999999999999999999999999999


Q ss_pred             HHHHHH--------------------------------------------------------------------------
Q psy7945         174 QILYVT--------------------------------------------------------------------------  179 (288)
Q Consensus       174 eiL~lT--------------------------------------------------------------------------  179 (288)
                      |||++|                                                                          
T Consensus        81 eiL~lT~P~~WSp~A~~~aTRiF~SnL~~~~aqrF~~~VLLprvredI~~~KKLn~hly~ALkKalyKP~AffkGil~PL  160 (301)
T PF05291_consen   81 EILYLTRPEKWSPHAMYEATRIFASNLNEKMAQRFYNLVLLPRVREDIAENKKLNYHLYMALKKALYKPAAFFKGILLPL  160 (301)
T ss_pred             HHHHhCChhhccHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCcHHHHHHHHHHh
Confidence            999999                                                                          


Q ss_pred             ----------------------------HHHHHHHhcccCCchHHHHHHHHHhhccCChHHHHHHHHHHhHhccccCCCC
Q psy7945         180 ----------------------------AAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDREL  231 (288)
Q Consensus       180 ----------------------------aaaLlkl~e~~y~g~~S~flr~LldKKYaLP~rvidalV~hF~rF~~~~~~L  231 (288)
                                                  ||||++||+|+|+|++|+|||+||||||||||||||+||+||+||+++.++|
T Consensus       161 ~~sg~CTlrEA~Ii~svl~k~sipvlhsaaaL~kl~~~~~~g~~s~flr~ll~KKYaLP~rviDalv~hFlrf~~~~~~l  240 (301)
T PF05291_consen  161 CESGTCTLREAVIIGSVLAKVSIPVLHSAAALLKLAEMEYSGANSIFLRVLLDKKYALPYRVIDALVFHFLRFRNDKRKL  240 (301)
T ss_pred             hcCCCccHHHHHHHHHHHHhcCCCchhHHHHHHHHHcCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHHhcccCCcc
Confidence                                        7999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHhcccCChhhHhhHHhHhccCCCCCCCCCc
Q psy7945         232 PVLWHQSLLTFAQRYKQDTSAQNRGKPCSIYSGLNPIQPLPWK  274 (288)
Q Consensus       232 PVlWHQsLL~FvqrYk~dl~~eqke~L~~Llk~~~~~~~~p~~  274 (288)
                      ||+||||||+||||||+|||+|||++|++|+++|+|++|||+-
T Consensus       241 PVlWHq~lL~F~qrYk~di~~eqk~~L~~ll~~~~H~~ItpEI  283 (301)
T PF05291_consen  241 PVLWHQSLLVFVQRYKNDITEEQKEALLELLRKQKHPQITPEI  283 (301)
T ss_pred             cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCCHHH
Confidence            9999999999999999999999999999999999999999974

Trophinin and tastin bind to an intermediary cytoplasmic protein called bystin. Bystin may be involved in implantation and trophoblast invasion because bystin is found with trophinin and tastin in the cells at human implantation sites and also in the intermediate trophoblasts at invasion front in the placenta from early pregnancy []. This family also includes the Saccharomyces cerevisiae protein ENP1. ENP1 is an essential protein in S. cerevisiae and is localised in the nucleus []. It is thought that ENP1 plays a direct role in the early steps of rRNA processing as enp1 defective S. cerevisiae cannot synthesise 20S pre-rRNA and hence 18S rRNA, which leads to reduced formation of 40S ribosomal subunits [].

>KOG3871|consensus

Probab=99.80  E-value=3.9e-21  Score=184.93  Aligned_cols=86  Identities=45%  Similarity=0.683  Sum_probs=74.3

Q ss_pred             CcchHHHHHHHhccccCCchHHHHHHHHhhhhcCchhhHhhhhhhhccccCCCCCCCCCCCcCCCCCCCCCCCC--CCCc
Q psy7945           1 MLHSAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIKEQTTKLHTGDSDNDLDADDDDKSTTSDDPNF--SGDY   78 (288)
Q Consensus         1 vlHsaaal~~l~~~~~~g~~s~firvllekky~Lp~~vidalve~FtKf~~~~~~~~~~dedeE~P~~~~~~e~--e~~~   78 (288)
                      ||||||||++||+|+|+|+||+|||+||||||+|||||+|++|+||+||..         ++.++||+||++-.  ...+
T Consensus       321 vlHSsaallrl~em~ysgatSvFir~lLdKKYalPYrvvD~~V~hFmrf~~---------d~R~lpVlwHqslLtf~QRY  391 (449)
T KOG3871|consen  321 VLHSSAALLRLAEMDYSGATSVFIRILLDKKYALPYRVVDALVFHFMRFRT---------DERVLPVLWHQSLLTFAQRY  391 (449)
T ss_pred             hHhHHHHHHHHHhcccCCcchHHHHHHhhhhccchHHHHHHHHHHHHHhhc---------cccchhHHHHHHHHHHHHHH
Confidence            699999999999999999999999999999999999999999999999986         45999999999443  2222


Q ss_pred             ccccccCHHhHHHHHHhhc
Q psy7945          79 YNEIIIDPEDEKALSLFMN   97 (288)
Q Consensus        79 ~~e~eid~eDe~~l~~Fm~   97 (288)
                        -.+|.+|+..+|-..+.
T Consensus       392 --K~di~~eqkdaLlellr  408 (449)
T KOG3871|consen  392 --KNDITQEQKDALLELLR  408 (449)
T ss_pred             --hhhcCHHHHHHHHHHHH
Confidence              35788888888776554

>PF05291 Bystin: Bystin; InterPro: IPR007955 Trophinin and tastin form a cell adhesion molecule complex that potentially mediates an initial attachment of the blastocyst to uterine epithelial cells at the time of implantation

Probab=99.73  E-value=6.2e-19  Score=166.24  Aligned_cols=88  Identities=45%  Similarity=0.591  Sum_probs=72.6

Q ss_pred             CcchHHHHHHHhccccCCchHHHHHHHHhhhhcCchhhHhhhhhhhccccCCCCCCCCCCCcCCCCCCCCCCCCCCCccc
Q psy7945           1 MLHSAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIKEQTTKLHTGDSDNDLDADDDDKSTTSDDPNFSGDYYN   80 (288)
Q Consensus         1 vlHsaaal~~l~~~~~~g~~s~firvllekky~Lp~~vidalve~FtKf~~~~~~~~~~dedeE~P~~~~~~e~e~~~~~   80 (288)
                      |+||||||++||+|+|+|++|+|||+||||||+|||||||++|+||.||...         .+++|++||++-..---.-
T Consensus       185 vlhsaaaL~kl~~~~~~g~~s~flr~ll~KKYaLP~rviDalv~hFlrf~~~---------~~~lPVlWHq~lL~F~qrY  255 (301)
T PF05291_consen  185 VLHSAAALLKLAEMEYSGANSIFLRVLLDKKYALPYRVIDALVFHFLRFRND---------KRKLPVLWHQSLLVFVQRY  255 (301)
T ss_pred             chhHHHHHHHHHcCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHHhccc---------CCcccHHHHHHHHHHHHHH
Confidence            6999999999999999999999999999999999999999999999999863         3899999998443211111


Q ss_pred             ccccCHHhHHHHHHhhc
Q psy7945          81 EIIIDPEDEKALSLFMN   97 (288)
Q Consensus        81 e~eid~eDe~~l~~Fm~   97 (288)
                      --+|++|+-++|-.-+.
T Consensus       256 k~di~~eqk~~L~~ll~  272 (301)
T PF05291_consen  256 KNDITEEQKEALLELLR  272 (301)
T ss_pred             HHhCCHHHHHHHHHHHH
Confidence            24677777777766554

Trophinin and tastin bind to an intermediary cytoplasmic protein called bystin. Bystin may be involved in implantation and trophoblast invasion because bystin is found with trophinin and tastin in the cells at human implantation sites and also in the intermediate trophoblasts at invasion front in the placenta from early pregnancy []. This family also includes the Saccharomyces cerevisiae protein ENP1. ENP1 is an essential protein in S. cerevisiae and is localised in the nucleus []. It is thought that ENP1 plays a direct role in the early steps of rRNA processing as enp1 defective S. cerevisiae cannot synthesise 20S pre-rRNA and hence 18S rRNA, which leads to reduced formation of 40S ribosomal subunits [].

>PF11510 FA_FANCE: Fanconi Anaemia group E protein FANCE; InterPro: IPR021025 Fanconi Anaemia (FA) is a cancer predisposition disorder characterised by chromosome fragility and hypersensitivity to genotoxic agents that suggest defects in the molecular mechanisms of DNA damage signalling and repair

Probab=80.27  E-value=9.2  Score=36.49  Aligned_cols=80  Identities=16%  Similarity=0.206  Sum_probs=52.9

Q ss_pred             HHhcccCCchHHHHHHHHHhhccCChHHHHHHHHHHhHhccccCCCCchHHHHHHHHHHHHhcccCChhhHhhHHhHhcc
Q psy7945         185 KIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQSLLTFAQRYKQDTSAQNRGKPCSIYSG  264 (288)
Q Consensus       185 kl~e~~y~g~~S~flr~LldKKYaLP~rvidalV~hF~rF~~~~~~LPVlWHQsLL~FvqrYk~dl~~eqke~L~~Llk~  264 (288)
                      .+.+.+|+-.+..++..++++|-.|.-..++-++.-+..= ...-.=-+-+-+-+|+|...|...+++.||..|...+..
T Consensus       168 ~~L~~~W~E~~~~Vlq~lL~~k~~l~~~~~~~l~~~L~~~-a~~~skSlkFakLlLtvltKy~~~it~~~~~~L~~~l~~  246 (263)
T PF11510_consen  168 QILELVWNEETFLVLQSLLERKVELSQELFSLLVELLCEQ-APQFSKSLKFAKLLLTVLTKYQSQITEAHKLSLAEALEL  246 (263)
T ss_dssp             HHHHS---HHHHHHHHHHHTT-----HHHHHHHHHHHH---------SHHHHHHHHHHHHHTGGG--HHHHHHHHHHH-S
T ss_pred             HHHhCcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh-hHhhhcchHHHHHHHHHHHHcchhccHHHHHHHHHHHHh
Confidence            4557899999999999999999999999998888888631 111112244788999999999999999999999888765


Q ss_pred             C
Q psy7945         265 L  265 (288)
Q Consensus       265 ~  265 (288)
                      .
T Consensus       247 n  247 (263)
T PF11510_consen  247 N  247 (263)
T ss_dssp             S
T ss_pred             c
Confidence            4

In response to DNA damage, the FA core complex monoubiquitinates the FANCD2 protein. This ubiquitination targets FANCD2 to nuclear foci where it interacts with a variety of DNA repair proteins. The FA group E protein (FANCE) has an important role in DNA repair, functioning as the FANCD2-binding protein in the FA core complex []. This entry represents the C-terminal domain of FANCE, which consists predominantly of helices and does not contain any beta-strands. This domain folds in a continuous right-handed solenoidal pattern from its N terminus to its C terminus. ; PDB: 2ILR_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	288
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 4e-05
 Identities = 47/258 (18%), Positives = 86/258 (33%), Gaps = 60/258 (23%)

Query: 21  SIFLRILLDKKYALPYRVVDA-------IKEQTTKLHTGDSDNDLDADDDDKSTTSD--- 70
           S+ L+ L  +   LP  V+         I E   +      DN    + D  +T  +   
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI-RDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 71  ---DPNFSGDYYNEIIIDPED----EKALSLFMNKHPG--PQLTLRDILREKITEKHTEL 121
              +P      ++ + + P         LSL           + +  + +  + EK  + 
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 122 DTQFSDAASVQIDNLDPKIKQMYEGVRDVLSKYRSGKLPKAF----KIVPKLRN-WEQ-I 175
            T      S+ ++ L  K++  Y   R ++  Y    +PK F     I P L   +   I
Sbjct: 424 STISIP--SIYLE-LKVKLENEYALHRSIVDHYN---IPKTFDSDDLIPPYLDQYFYSHI 477

Query: 176 LYVTAAALLKIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLW 235
            +        +  +E+    ++F  + LD              F FL  E++ R     W
Sbjct: 478 GH-------HLKNIEHPERMTLFRMVFLD--------------FRFL--EQKIRHDSTAW 514

Query: 236 HQS-----LLTFAQRYKQ 248
           + S      L   + YK 
Sbjct: 515 NASGSILNTLQQLKFYKP 532

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	288
2ilr_A	264	Protein FACE, fanconi anemia group E protein; anti	82.97

>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}

Probab=82.97  E-value=7.1  Score=36.01  Aligned_cols=80  Identities=11%  Similarity=0.194  Sum_probs=64.1

Q ss_pred             HHhcccCCchHHHHHHHHHhhccCChHHHHHHHHHHhHhccccCCCCchHHHHHHHHHHHHhcccCChhhHhhHHhHhcc
Q psy7945         185 KIAEMEYNGANSIFLRILLDKKYALPYRVVDAIVFHFLRFEREDRELPVLWHQSLLTFAQRYKQDTSAQNRGKPCSIYSG  264 (288)
Q Consensus       185 kl~e~~y~g~~S~flr~LldKKYaLP~rvidalV~hF~rF~~~~~~LPVlWHQsLL~FvqrYk~dl~~eqke~L~~Llk~  264 (288)
                      .+-+.+|+-.+...+..++++|-.|.-..++.+|..+..=... -.=-.-+-+-+|+|+..|...+++.|+..|...+..
T Consensus       168 ~iL~l~WtE~~~~Vlq~lL~~k~~L~~~~i~~Lv~~L~~~a~~-~skSlkFakLll~~itky~~~i~~~~~~~L~~~l~~  246 (264)
T 2ilr_A          168 QILELPWKEETFLVLQSLLERQVEMTPEKFSVLMEKLCKKGLA-ATTSMAYAKLMLTVMTKYQANITETQRLGLAMALEP  246 (264)
T ss_dssp             HHHHSCCCHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHC------CCSHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHCS
T ss_pred             HHHhccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhHH-hhcccHHHHHHHHHHHHhHHhcCHHHHHHHHHHHHh
Confidence            3446799999999999999999999999999999999742211 111234788899999999999999999989888765


Q ss_pred             C
Q psy7945         265 L  265 (288)
Q Consensus       265 ~  265 (288)
                      .
T Consensus       247 n  247 (264)
T 2ilr_A          247 N  247 (264)
T ss_dssp             S
T ss_pred             h
Confidence            3

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00