Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 102
pfam00282 373
pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca
2e-21 cd06450 345
cd06450, DOPA_deC_like, DOPA decarboxylase family
1e-05 COG0076 460
COG0076, GadB, Glutamate decarboxylase and related
0.001 PLN02880 490
PLN02880, PLN02880, tyrosine decarboxylase
0.002
>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain
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Score = 85.9 bits (213), Expect = 2e-21
Identities = 25/77 (32%), Positives = 36/77 (46%)
Query: 26 LADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQ 85
ADS ++NPHK + CS R + L + + YL DK D D GD I
Sbjct: 252 RADSFSFNPHKWMLVLLDCSALWVRDKGALQQALQFNPEYLGHNDKQSDVAVDYGDWQIP 311
Query: 86 CGRKPDVLKFWFMWKAK 102
R+ +LK WF+ ++
Sbjct: 312 LSRRFRILKLWFVLRSY 328
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family
Back Show alignment and domain information
Score = 41.8 bits (99), Expect = 1e-05
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 13 AGGLDHFHQPRQVL-----ADSVTWNPHKLLTAPQQCSVFLTR 50
G L F +PR + DS++ +PHK P CS L R
Sbjct: 188 GGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR 230
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Back Show alignment and domain information
Score = 36.2 bits (84), Expect = 0.001
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 26 LADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYL 66
DS+T + HK AP C V L R + L + YL
Sbjct: 266 GVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYL 306
>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase
Back Show alignment and domain information
Score = 35.7 bits (82), Expect = 0.002
Identities = 20/70 (28%), Positives = 30/70 (42%)
Query: 27 ADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQC 86
ADS N HK CS+ + ++ L + S + +L K ++ D D I
Sbjct: 298 ADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPL 357
Query: 87 GRKPDVLKFW 96
GR+ LK W
Sbjct: 358 GRRFRSLKLW 367
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
102
PLN02590 539
probable tyrosine decarboxylase
99.94 PF00282 373
Pyridoxal_deC: Pyridoxal-dependent decarboxylase c
99.91 PLN02880 490
tyrosine decarboxylase
99.89 KOG0628|consensus 511
99.88 TIGR03811 608
tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu
99.84 KOG0629|consensus 510
99.82 TIGR03799 522
NOD_PanD_pyr putative pyridoxal-dependent aspartat
99.79 PLN02263 470
serine decarboxylase
99.66 PLN03032 374
serine decarboxylase; Provisional
99.55 COG0076 460
GadB Glutamate decarboxylase and related PLP-depen
99.54 TIGR01788 431
Glu-decarb-GAD glutamate decarboxylase. This model
99.47 PRK02769 380
histidine decarboxylase; Provisional
99.33 KOG1383|consensus 491
97.57 PRK13520 371
L-tyrosine decarboxylase; Provisional
97.26 TIGR03812 373
tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe
97.2 TIGR03531 444
selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr
97.18 cd06450 345
DOPA_deC_like DOPA decarboxylase family. This fami
96.85 PRK04366 481
glycine dehydrogenase subunit 2; Validated
95.9 PRK05367 954
glycine dehydrogenase; Provisional
95.74 TIGR00461 939
gcvP glycine dehydrogenase (decarboxylating). This
95.16 TIGR01977 376
am_tr_V_EF2568 cysteine desulfurase family protein
94.84 PLN02651 364
cysteine desulfurase
94.32 COG0520 405
csdA Selenocysteine lyase/Cysteine desulfurase [Po
93.69 PLN02724 805
Molybdenum cofactor sulfurase
92.23 TIGR02006 402
IscS cysteine desulfurase IscS. This model represe
92.14 cd01494 170
AAT_I Aspartate aminotransferase (AAT) superfamily
89.66 TIGR03402 379
FeS_nifS cysteine desulfurase NifS. Members of thi
89.56 TIGR03235 353
DNA_S_dndA cysteine desulfurase DndA. This model d
89.17 TIGR03403 382
nifS_epsilon cysteine desulfurase, NifS family, ep
88.65 PTZ00094 452
serine hydroxymethyltransferase; Provisional
86.73 PRK03080 378
phosphoserine aminotransferase; Provisional
85.46 cd06451 356
AGAT_like Alanine-glyoxylate aminotransferase (AGA
83.86 PRK14012 404
cysteine desulfurase; Provisional
83.15 PF00266 371
Aminotran_5: Aminotransferase class-V; InterPro: I
82.72 PLN02409 401
serine--glyoxylate aminotransaminase
81.69 KOG1549|consensus 428
81.27 PLN02271 586
serine hydroxymethyltransferase
80.36
>PLN02590 probable tyrosine decarboxylase
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Probab=99.94 E-value=2.9e-27 Score=193.10 Aligned_cols=90 Identities=27% Similarity=0.294 Sum_probs=80.8
Q ss_pred CCCcccccccCCCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCCcC
Q psy8011 12 QAGGLDHFHQPRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPD 91 (102)
Q Consensus 12 ~~~ef~~~~~~gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr~~ 91 (102)
-+|+++++. +|||+||||++||||||++|++||++|+|++..+.++|..+++||.......+..+|+++|+++||||||
T Consensus 332 ~~~~~r~~~-~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~r 410 (539)
T PLN02590 332 ICPEYRKFI-DGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFR 410 (539)
T ss_pred cChhhHHHh-cCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchH
Confidence 378999999 7999999999999999999999999999999999899999999996543323457899999999999999
Q ss_pred hHHHHHhhhcC
Q psy8011 92 VLKFWFMWKAK 102 (102)
Q Consensus 92 aLklW~~lr~~ 102 (102)
|||+|++||.+
T Consensus 411 aLklW~~lr~~ 421 (539)
T PLN02590 411 SLKLWMVLRLY 421 (539)
T ss_pred HHHHHHHHHHH
Confidence 99999999964
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)
Back Show alignment and domain information
Probab=99.91 E-value=8.5e-26 Score=176.96 Aligned_cols=88 Identities=36% Similarity=0.521 Sum_probs=76.4
Q ss_pred CCcccccccCCCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCCcCh
Q psy8011 13 AGGLDHFHQPRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDV 92 (102)
Q Consensus 13 ~~ef~~~~~~gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr~~a 92 (102)
+|+++++. .|+|+||||++||||||++|++||++++||+..+..+++.+++||.+...+.+...+++++||+|||+++|
T Consensus 240 ~~~~~~~~-~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR~~~a 318 (373)
T PF00282_consen 240 SPEYRHLL-FGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSRRFRA 318 (373)
T ss_dssp HCTTGGGG-TTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSGHHHH
T ss_pred cccccccc-cccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccccccccccccccccccccccchH
Confidence 48899988 79999999999999999999999999999999998888899999997654445678899999999999999
Q ss_pred HHHHHhhhc
Q psy8011 93 LKFWFMWKA 101 (102)
Q Consensus 93 LklW~~lr~ 101 (102)
||+|++||.
T Consensus 319 lk~w~~l~~ 327 (373)
T PF00282_consen 319 LKLWATLKS 327 (373)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999985
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
>PLN02880 tyrosine decarboxylase
Back Show alignment and domain information
Probab=99.89 E-value=4.6e-24 Score=172.24 Aligned_cols=88 Identities=24% Similarity=0.370 Sum_probs=79.0
Q ss_pred CCcccccccCCCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCCcCh
Q psy8011 13 AGGLDHFHQPRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDV 92 (102)
Q Consensus 13 ~~ef~~~~~~gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr~~a 92 (102)
.|+|+++. +||++||||++|+||||++|++||++++|++..+..++..+++||.+......+.+|+.+|++++|||+||
T Consensus 285 ~~~~~~~l-~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~a 363 (490)
T PLN02880 285 CPEYRHYI-DGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRS 363 (490)
T ss_pred CHHHHHHh-cCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCCCCcccH
Confidence 57899998 79999999999999999999999999999998888899999999987543333468899999999999999
Q ss_pred HHHHHhhhc
Q psy8011 93 LKFWFMWKA 101 (102)
Q Consensus 93 LklW~~lr~ 101 (102)
||+|++||.
T Consensus 364 lklw~~l~~ 372 (490)
T PLN02880 364 LKLWMVLRL 372 (490)
T ss_pred HHHHHHHHH
Confidence 999999986
>KOG0628|consensus
Back Show alignment and domain information
Probab=99.88 E-value=1.3e-24 Score=173.90 Aligned_cols=88 Identities=24% Similarity=0.343 Sum_probs=82.9
Q ss_pred CCCcccccccCCCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCCcC
Q psy8011 12 QAGGLDHFHQPRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPD 91 (102)
Q Consensus 12 ~~~ef~~~~~~gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr~~ 91 (102)
-||||+++. +|||.|||++.|||||+.+.++||.+|+||+..+..+|+.++-||.+...+ ...|+.+|+|++|||||
T Consensus 280 iCpE~r~l~-rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~--~~~Dyrhwqipl~rRfR 356 (511)
T KOG0628|consen 280 ICPEFRYLM-RGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQG--SAPDYRHWQIPLGRRFR 356 (511)
T ss_pred cCHHHHHHh-hcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhhc--cCCCccccccccccchh
Confidence 599999999 799999999999999999999999999999988889999999999998764 48999999999999999
Q ss_pred hHHHHHhhhcC
Q psy8011 92 VLKFWFMWKAK 102 (102)
Q Consensus 92 aLklW~~lr~~ 102 (102)
|||+|+++|.+
T Consensus 357 SLKlWfv~R~~ 367 (511)
T KOG0628|consen 357 SLKLWFVLRSY 367 (511)
T ss_pred hHHHHHHHHHH
Confidence 99999999963
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type
Back Show alignment and domain information
Probab=99.84 E-value=1.4e-21 Score=161.53 Aligned_cols=85 Identities=20% Similarity=0.240 Sum_probs=72.8
Q ss_pred CCcccccccCCCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCC-cC
Q psy8011 13 AGGLDHFHQPRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRK-PD 91 (102)
Q Consensus 13 ~~ef~~~~~~gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr-~~ 91 (102)
.+++++.. +||++||||++|||||+++||+||++++||+. +.+.++..++||.+... +.....+++++++||+ ++
T Consensus 361 ~~~~~~~l-~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~-~~~~~~~~a~Yl~~~~~--~~p~~~g~~~legSR~ga~ 436 (608)
T TIGR03811 361 SREVYNAY-KAISEAESVTIDPHKMGYIPYSAGGIVIQDIR-MRDVISYFATYVFEKGA--DIPALLGAYILEGSKAGAT 436 (608)
T ss_pred cHhHHHHH-hcCcCceEEEeCcccccccCCCeEEEEEeCHH-HHHHHhcCcchhccccc--cCcccccccceecCCccHH
Confidence 36778888 69999999999999999999999999999996 66788999999976432 1223578999999997 89
Q ss_pred hHHHHHhhhc
Q psy8011 92 VLKFWFMWKA 101 (102)
Q Consensus 92 aLklW~~lr~ 101 (102)
|+|+|+++|.
T Consensus 437 AlklW~~lr~ 446 (608)
T TIGR03811 437 AASVWAAHKV 446 (608)
T ss_pred HHHHHHHHHH
Confidence 9999999986
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
>KOG0629|consensus
Back Show alignment and domain information
Probab=99.82 E-value=2.1e-21 Score=154.75 Aligned_cols=87 Identities=60% Similarity=1.056 Sum_probs=81.9
Q ss_pred cccccccCCCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCCcChHH
Q psy8011 15 GLDHFHQPRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDVLK 94 (102)
Q Consensus 15 ef~~~~~~gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr~~aLk 94 (102)
..+|++ .|||+|||++|||||++++|..||++++|....|.++.+.+|.||++++..++-.+|.|+.++||+|+.+.+|
T Consensus 301 k~R~kl-~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FK 379 (510)
T KOG0629|consen 301 KHRHKL-TGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFK 379 (510)
T ss_pred hhHhhc-cCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccHHH
Confidence 456766 6999999999999999999999999999999999899999999999999988889999999999999999999
Q ss_pred HHHhhhcC
Q psy8011 95 FWFMWKAK 102 (102)
Q Consensus 95 lW~~lr~~ 102 (102)
+|++||.+
T Consensus 380 lWlmwkaK 387 (510)
T KOG0629|consen 380 LWLMWKAK 387 (510)
T ss_pred HHHHHHhc
Confidence 99999974
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase
Back Show alignment and domain information
Probab=99.79 E-value=4.9e-20 Score=150.15 Aligned_cols=83 Identities=20% Similarity=0.274 Sum_probs=73.1
Q ss_pred CCCcccccccCCCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCCcC
Q psy8011 12 QAGGLDHFHQPRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPD 91 (102)
Q Consensus 12 ~~~ef~~~~~~gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr~~ 91 (102)
.+++++++. +|++.||||++|+||||++|++||++++|++..+ +++...+.|+.... ..|++++++|+||+++
T Consensus 310 ~~~~~r~~l-~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~-~~~~~~~~Yl~~~~-----~~d~~~~~legsR~~~ 382 (522)
T TIGR03799 310 LSNTYRHLL-KGIERADSVTIDAHKQLYVPMGAGMVLFKDPALM-SAIEHHAEYILRKG-----SKDLGSHTLEGSRPGM 382 (522)
T ss_pred hCHHHHHHh-cCchhCCEEEEChhhcCCcCcccEEEEEeCHHHH-HHhccCcchhcCCC-----CCccccceeecCcchH
Confidence 357889988 7999999999999999999999999999998754 67888899986532 3568899999999999
Q ss_pred hHHHHHhhhc
Q psy8011 92 VLKFWFMWKA 101 (102)
Q Consensus 92 aLklW~~lr~ 101 (102)
+||+|++||.
T Consensus 383 al~lw~aL~~ 392 (522)
T TIGR03799 383 AMLVYAGLHI 392 (522)
T ss_pred HHHHHHHHHH
Confidence 9999999985
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
>PLN02263 serine decarboxylase
Back Show alignment and domain information
Probab=99.66 E-value=6.5e-17 Score=130.71 Aligned_cols=68 Identities=25% Similarity=0.432 Sum_probs=58.5
Q ss_pred CCCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCCc-ChHHHHHhhh
Q psy8011 22 PRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKP-DVLKFWFMWK 100 (102)
Q Consensus 22 ~gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr~-~aLklW~~lr 100 (102)
.+.+.||||++||||||++|++||++|+|++. + .+++.+++||... +.|+++||++ ++||+|++||
T Consensus 287 df~~~vDSIsvD~HK~l~~P~~cgvll~R~~~-~-~~~~~~~~Yl~~~-----------d~ti~gSR~g~~al~lW~~L~ 353 (470)
T PLN02263 287 TFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH-I-NVLSSNVEYLASR-----------DATIMGSRNGHAPIFLWYTLN 353 (470)
T ss_pred CCCcCccEEEECCccccCCCcCEEEEEEehhh-H-hhhccChHhhCCC-----------CCCcCCCCCcHHHHHHHHHHH
Confidence 36777999999999999999999999999753 3 6788999999763 3589999997 6999999998
Q ss_pred cC
Q psy8011 101 AK 102 (102)
Q Consensus 101 ~~ 102 (102)
.+
T Consensus 354 ~~ 355 (470)
T PLN02263 354 RK 355 (470)
T ss_pred Hh
Confidence 64
>PLN03032 serine decarboxylase; Provisional
Back Show alignment and domain information
Probab=99.55 E-value=6.2e-15 Score=116.16 Aligned_cols=67 Identities=30% Similarity=0.478 Sum_probs=57.1
Q ss_pred CCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCC-cChHHHHHhhhc
Q psy8011 23 RQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRK-PDVLKFWFMWKA 101 (102)
Q Consensus 23 gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr-~~aLklW~~lr~ 101 (102)
..+.+|||++|+||++++|++||++++|++. + ..+..+++|+... ++|+++||+ ++++++|++|+.
T Consensus 221 ~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~-~-~~~~~~~~Yl~~~-----------d~ti~gSR~g~~~l~~w~~l~~ 287 (374)
T PLN03032 221 FRKPIGSVSVSGHKFLGCPMPCGVALTRKKH-V-KALSQNVEYLNSR-----------DATIMGSRNGHAPLYLWYTLRR 287 (374)
T ss_pred CCcCCcEEEECcccccCCCcCeEEEEEEchh-h-HhhccCCcccCCC-----------CCcccCCCchHHHHHHHHHHHH
Confidence 3456999999999999999999999999853 3 5688899999642 479999998 799999999986
Q ss_pred C
Q psy8011 102 K 102 (102)
Q Consensus 102 ~ 102 (102)
+
T Consensus 288 ~ 288 (374)
T PLN03032 288 K 288 (374)
T ss_pred h
Confidence 3
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=99.54 E-value=6.6e-15 Score=118.72 Aligned_cols=72 Identities=24% Similarity=0.191 Sum_probs=63.8
Q ss_pred CCCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCCc-ChHHHHHhhh
Q psy8011 22 PRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKP-DVLKFWFMWK 100 (102)
Q Consensus 22 ~gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr~-~aLklW~~lr 100 (102)
.|+++||||++|+|||+++|++||++++||+..+.......+.|+... ...++++.+||.. +++|.|++||
T Consensus 262 f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~--------~~~~~ti~~sr~~~~~~~~~~~l~ 333 (460)
T COG0076 262 FGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGG--------GIPNFTILGSRPGRQALALYANLR 333 (460)
T ss_pred cCCCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhcccccCCCC--------CcCceeEeeccchHHHHHHHHHHH
Confidence 599999999999999999999999999999988888888888888642 2457999999996 8999999998
Q ss_pred c
Q psy8011 101 A 101 (102)
Q Consensus 101 ~ 101 (102)
.
T Consensus 334 ~ 334 (460)
T COG0076 334 R 334 (460)
T ss_pred H
Confidence 5
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase
Back Show alignment and domain information
Probab=99.47 E-value=3.6e-14 Score=113.47 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=63.0
Q ss_pred CcccccccCCCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCCc-Ch
Q psy8011 14 GGLDHFHQPRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKP-DV 92 (102)
Q Consensus 14 ~ef~~~~~~gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr~-~a 92 (102)
+++.... .++.|||+++|+|||++.|++||+|++|++..+...+...++|+.... .++++++||++ ++
T Consensus 241 ~~~~~~~--~~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~---------~~~t~~~sR~g~~a 309 (431)
T TIGR01788 241 PDLEWDF--RLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDE---------PTFTLNFSRPANQV 309 (431)
T ss_pred CCchhhc--CCCCceEEEECchhccCCCCCcEEEEEeChHHcchhheecccccCCCC---------CCcceecCchHHHH
Confidence 3444333 478999999999999999999999999998767677888889995421 24799999996 89
Q ss_pred HHHHHhhhc
Q psy8011 93 LKFWFMWKA 101 (102)
Q Consensus 93 LklW~~lr~ 101 (102)
+++|+.|+.
T Consensus 310 l~~w~~l~~ 318 (431)
T TIGR01788 310 IAQYYNFLR 318 (431)
T ss_pred HHHHHHHHH
Confidence 999999875
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
>PRK02769 histidine decarboxylase; Provisional
Back Show alignment and domain information
Probab=99.33 E-value=1.6e-12 Score=102.37 Aligned_cols=66 Identities=23% Similarity=0.399 Sum_probs=54.7
Q ss_pred CCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCC-cChHHHHHhhhc
Q psy8011 23 RQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRK-PDVLKFWFMWKA 101 (102)
Q Consensus 23 gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr-~~aLklW~~lr~ 101 (102)
+.+.+|||++|+|||+++|++||++++|++. + ..+..+++|+.. .+++++|||+ ++++++|.+|+.
T Consensus 218 ~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~-~-~~~~~~~~yl~~-----------~d~t~~GSR~g~~~l~lw~aL~~ 284 (380)
T PRK02769 218 FADGIDSIAISGHKFIGSPMPCGIVLAKKKY-V-ERISVDVDYIGS-----------RDQTISGSRNGHTALLLWAAIRS 284 (380)
T ss_pred ccCCCCEEEECCcccCCCCCCcEEEEEehhh-h-hhcccCccccCC-----------CCCCccCCCCcHHHHHHHHHHHH
Confidence 4458999999999999999999999999753 3 456667888753 2468999997 799999999985
>KOG1383|consensus
Back Show alignment and domain information
Probab=97.57 E-value=5.2e-05 Score=61.82 Aligned_cols=70 Identities=20% Similarity=0.170 Sum_probs=59.4
Q ss_pred CCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCC-cChHHHHHhhhc
Q psy8011 23 RQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRK-PDVLKFWFMWKA 101 (102)
Q Consensus 23 gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr-~~aLklW~~lr~ 101 (102)
+...+-||+.|.||-+++|-+.|.++.|++..+...+...++|+... +...||.+||+ +...--|++|-.
T Consensus 276 r~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~---------y~s~TlngSR~g~~va~~wa~~~~ 346 (491)
T KOG1383|consen 276 RVPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGI---------YASPTLNGSRPGSQVAAQWAALMS 346 (491)
T ss_pred CCCCceeEeeccceeeeeecCcEEEEEcccccccceEEEeccccCcc---------ccCcccccCCcccHHHHHHHHHHH
Confidence 67788899999999999999999999999999887777788888543 35789999999 667777887753
>PRK13520 L-tyrosine decarboxylase; Provisional
Back Show alignment and domain information
Probab=97.26 E-value=0.00056 Score=52.11 Aligned_cols=66 Identities=27% Similarity=0.340 Sum_probs=45.5
Q ss_pred CCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCC-cChHHHHHhhh
Q psy8011 24 QVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRK-PDVLKFWFMWK 100 (102)
Q Consensus 24 ie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr-~~aLklW~~lr 100 (102)
...+|++++++|||+..|.+||.++++++..+ ..+.....|+.... .+...++|. ..++.+|.+++
T Consensus 208 ~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~-~~l~~~~~~~~~~~----------~~~~~gt~~~~~~~~~~~al~ 274 (371)
T PRK13520 208 LPGVDSITIDPHKMGLAPIPAGGILFRDESYL-DALAVDTPYLTSKK----------QATLTGTRSGAGVAATYAVMK 274 (371)
T ss_pred CCCCceEEECCccccCccCCceEEEEcCHHHH-HhhcccCccccCCC----------CcceEeeccChHHHHHHHHHh
Confidence 45689999999999999999999999887544 44444445553321 234456776 45667777664
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA
Back Show alignment and domain information
Probab=97.20 E-value=0.00065 Score=51.88 Aligned_cols=65 Identities=28% Similarity=0.296 Sum_probs=44.9
Q ss_pred CcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCC-cChHHHHHhhh
Q psy8011 25 VLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRK-PDVLKFWFMWK 100 (102)
Q Consensus 25 e~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr-~~aLklW~~lr 100 (102)
..+|++++++|||+..|.++|.++++++..+ ..+.....|+... ..++..++|. ...+.+|..++
T Consensus 214 ~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~-~~l~~~~~~~~~~----------~~~~~~gt~~~~~~~~~~~~l~ 279 (373)
T TIGR03812 214 PGVQSITIDPHKMGLSPIPAGGILFRSKSYL-KYLSVDAPYLTVK----------KQATITGTRSGASAAATYAVIK 279 (373)
T ss_pred CCCCEEEECccccCCCcCCceEEEEeCHHHH-hhhcccCcccCCC----------CCcceEeechhHHHHHHHHHHH
Confidence 3689999999999999999999888877654 3444444555321 1334557776 45667777665
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase
Back Show alignment and domain information
Probab=97.18 E-value=0.00037 Score=56.50 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=36.8
Q ss_pred CCCcccccccCCCC--cCCeeeecccccCCCCCCceeEEEeCchHHH
Q psy8011 12 QAGGLDHFHQPRQV--LADSVTWNPHKLLTAPQQCSVFLTRHQSVLT 56 (102)
Q Consensus 12 ~~~ef~~~~~~gie--~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~ 56 (102)
.++.+.++.++|++ +||++++|+||++.+|.++|+++++|+....
T Consensus 247 ~~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~ 293 (444)
T TIGR03531 247 QSNKYMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQ 293 (444)
T ss_pred cChhhhhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHH
Confidence 45666777655654 6999999999999999999999999987653
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
>cd06450 DOPA_deC_like DOPA decarboxylase family
Back Show alignment and domain information
Probab=96.85 E-value=0.00027 Score=53.37 Aligned_cols=28 Identities=36% Similarity=0.513 Sum_probs=26.0
Q ss_pred CCCcCCeeeecccccCCCCCCceeEEEe
Q psy8011 23 RQVLADSVTWNPHKLLTAPQQCSVFLTR 50 (102)
Q Consensus 23 gie~ADSis~D~HK~L~~P~~cg~ll~r 50 (102)
+++.+||+++++|||++.|++||.++++
T Consensus 203 ~~~~~d~~~~s~~K~l~~p~g~g~~~~~ 230 (345)
T cd06450 203 GIERVDSISVDPHKYGLVPLGCSAVLVR 230 (345)
T ss_pred CccccCEEEEchhHhhCCCcchHHHHHH
Confidence 5678999999999999999999999887
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
>PRK04366 glycine dehydrogenase subunit 2; Validated
Back Show alignment and domain information
Probab=95.90 E-value=0.013 Score=47.45 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=25.2
Q ss_pred CCCcCCeeeecccccCCCCCCce-----eEEEeCc
Q psy8011 23 RQVLADSVTWNPHKLLTAPQQCS-----VFLTRHQ 52 (102)
Q Consensus 23 gie~ADSis~D~HK~L~~P~~cg-----~ll~rd~ 52 (102)
|-..||+++.++||||++|++|| ++.+|+.
T Consensus 258 ~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~ 292 (481)
T PRK04366 258 GDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEE 292 (481)
T ss_pred cccCCCEEEEechhhcCCCCCCCCCCeeeeeehhh
Confidence 44468999999999999999875 7778764
>PRK05367 glycine dehydrogenase; Provisional
Back Show alignment and domain information
Probab=95.74 E-value=0.012 Score=51.99 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=25.4
Q ss_pred CCCcCCeeeecccccCCCCCCce-----eEEEeC
Q psy8011 23 RQVLADSVTWNPHKLLTAPQQCS-----VFLTRH 51 (102)
Q Consensus 23 gie~ADSis~D~HK~L~~P~~cg-----~ll~rd 51 (102)
|--.||+++.|+|||+++|+++| .+.+|+
T Consensus 690 g~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~ 723 (954)
T PRK05367 690 GDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKA 723 (954)
T ss_pred hhcCCCEEEecCcccCCCCcCCCCCceEEEeecc
Confidence 55679999999999999999966 888874
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)
Back Show alignment and domain information
Probab=95.16 E-value=0.044 Score=48.43 Aligned_cols=72 Identities=13% Similarity=0.041 Sum_probs=46.5
Q ss_pred CCCcCCeeeecccccCCCCCCc-----eeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCCcCh----H
Q psy8011 23 RQVLADSVTWNPHKLLTAPQQC-----SVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPDV----L 93 (102)
Q Consensus 23 gie~ADSis~D~HK~L~~P~~c-----g~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr~~a----L 93 (102)
|-..||.+++|.||+|++|+++ |++.+|+. |...+ .........+.. +.. .+.+...++.+++ +
T Consensus 678 g~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~--L~~~l-Pg~~v~~t~d~~-gre---q~Iga~s~~~~g~a~~~l 750 (939)
T TIGR00461 678 GDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSH--LIPFL-PKHDVVSMITGI-GGS---KSIGSVSAAPYGSASILP 750 (939)
T ss_pred cccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhh--chhhc-CCCcccccccCC-CCc---cccccccccccCcHHHHH
Confidence 6677999999999999999998 99999964 43222 222211111100 001 1234556677777 9
Q ss_pred HHHHhhhc
Q psy8011 94 KFWFMWKA 101 (102)
Q Consensus 94 klW~~lr~ 101 (102)
+.|+.|++
T Consensus 751 ~a~~yi~~ 758 (939)
T TIGR00461 751 ISWMYIKM 758 (939)
T ss_pred HHHHHHHH
Confidence 99998875
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein
Back Show alignment and domain information
Probab=94.84 E-value=0.025 Score=43.17 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=26.4
Q ss_pred CcCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 25 VLADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 25 e~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
..+|.+++++|||++.|.++|++++++..
T Consensus 188 ~~~D~~~~s~~K~l~~p~g~g~l~~~~~~ 216 (376)
T TIGR01977 188 LAIDMLAFTGHKGLLGPQGTGGLYIREGI 216 (376)
T ss_pred cCCCEEEecccccccCCCCceEEEEcCCc
Confidence 35899999999999999999999998875
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
>PLN02651 cysteine desulfurase
Back Show alignment and domain information
Probab=94.32 E-value=0.031 Score=43.02 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=23.6
Q ss_pred CCeeeecccccCCCCCCceeEEEeCch
Q psy8011 27 ADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 27 ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
+|.+++++||| +.|.++|++++|++.
T Consensus 191 ~D~~~~s~hK~-~gp~G~g~l~v~~~~ 216 (364)
T PLN02651 191 VDLMSISGHKI-YGPKGVGALYVRRRP 216 (364)
T ss_pred CCEEEechhhh-CCCCceEEEEEcCCC
Confidence 79999999998 789999999999853
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Probab=93.69 E-value=0.051 Score=43.56 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=25.6
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
.+|=+.+++||||+-|-++|+|++|+..
T Consensus 214 ~~Df~afsgHKwl~gP~GiGvLy~r~~~ 241 (405)
T COG0520 214 GCDFLAFSGHKWLLGPTGIGVLYVRKEL 241 (405)
T ss_pred CCCEEEEcccccccCCCceEEEEEchHH
Confidence 4899999999999999999999998754
>PLN02724 Molybdenum cofactor sulfurase
Back Show alignment and domain information
Probab=92.23 E-value=0.11 Score=44.91 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=24.9
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
.+|-+++++|||++-|.++|+|++|+.
T Consensus 252 ~~Dfl~~S~HK~~GgP~G~G~L~vr~~ 278 (805)
T PLN02724 252 PADFVVVSFYKIFGYPTGLGALLVRRD 278 (805)
T ss_pred CCCEEEEecceeccCCCCceEEEEehh
Confidence 479999999999999999999999975
>TIGR02006 IscS cysteine desulfurase IscS
Back Show alignment and domain information
Probab=92.14 E-value=0.11 Score=40.71 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=23.5
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
.+|.+++++||++ .|.+||++++++..
T Consensus 194 ~~D~~~~s~~K~~-gp~G~G~l~~~~~~ 220 (402)
T TIGR02006 194 KVDLMSISGHKIY-GPKGIGALYVRRKP 220 (402)
T ss_pred CCCEEEEehhhhc-CCCceEEEEEccCC
Confidence 5899999999965 59999999999753
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes
Back Show alignment and domain information
Probab=89.66 E-value=0.32 Score=32.06 Aligned_cols=26 Identities=31% Similarity=0.334 Sum_probs=22.9
Q ss_pred CCcCCeeeecccccCCCCCCceeEEEe
Q psy8011 24 QVLADSVTWNPHKLLTAPQQCSVFLTR 50 (102)
Q Consensus 24 ie~ADSis~D~HK~L~~P~~cg~ll~r 50 (102)
...+|.++..+||++.. ..+|++++|
T Consensus 145 ~~~~d~~~~s~~K~~~~-~~~G~l~~~ 170 (170)
T cd01494 145 EGGADVVTFSLHKNLGG-EGGGVVIVK 170 (170)
T ss_pred cccCCEEEEEcccccCC-CceEEEEeC
Confidence 35689999999999999 799999886
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
>TIGR03402 FeS_nifS cysteine desulfurase NifS
Back Show alignment and domain information
Probab=89.56 E-value=0.26 Score=37.89 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=23.8
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
.+|.+++++|| ++.|.++|++++|+..
T Consensus 188 ~~D~~~~s~~K-~~gp~G~g~l~v~~~~ 214 (379)
T TIGR03402 188 NIDMLSLSGHK-LHGPKGVGALYIRKGT 214 (379)
T ss_pred CCCEEEEcHHH-cCCCCceEEEEECCCC
Confidence 58999999999 6789999999998653
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA
Back Show alignment and domain information
Probab=89.17 E-value=0.29 Score=37.24 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=23.8
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
.+|.++.++||| +.|.++|+++++++.
T Consensus 190 ~~D~~~~s~~K~-~gp~g~g~l~~~~~~ 216 (353)
T TIGR03235 190 RIDLISCSGHKI-YGPKGIGALVIRKRG 216 (353)
T ss_pred CCCEEEeehhhc-CCCCceEEEEEccCc
Confidence 589999999998 569999999999763
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type
Back Show alignment and domain information
Probab=88.65 E-value=0.36 Score=37.21 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=23.6
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
.+|.+++++||| +-|.++|++++|+..
T Consensus 192 ~~D~~~~s~~K~-~gp~G~g~l~vr~~~ 218 (382)
T TIGR03403 192 GVDFLSFSAHKF-HGPKGVGGLYIRKGV 218 (382)
T ss_pred CCCEEEEcchhh-CCCCceEEEEECCCC
Confidence 589999999998 569999999999864
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
>PTZ00094 serine hydroxymethyltransferase; Provisional
Back Show alignment and domain information
Probab=86.73 E-value=0.67 Score=37.14 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=23.6
Q ss_pred CCcCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 24 QVLADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 24 ie~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
+..+|-++..+||||+-|.+ |++++++.
T Consensus 233 ~~~~D~l~~S~hK~l~GP~G-g~l~~~~~ 260 (452)
T PTZ00094 233 FPYADVVTTTTHKSLRGPRS-GLIFYRKK 260 (452)
T ss_pred CCCCcEEEcCCccCCCCCCc-eEEEEecc
Confidence 34699999999999999996 88888754
>PRK03080 phosphoserine aminotransferase; Provisional
Back Show alignment and domain information
Probab=85.46 E-value=0.41 Score=37.40 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=26.3
Q ss_pred CCcCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 24 QVLADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 24 ie~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
++.+|=+....||||+.|.++|++++++..
T Consensus 182 v~~iD~~~~s~~K~l~~P~G~g~l~v~~~~ 211 (378)
T PRK03080 182 WSKLDVYTFSWQKVLGGEGGHGMAILSPRA 211 (378)
T ss_pred HHHCcEEEEehhhhCCCCCceEEEEECHHH
Confidence 455799999999999999999999998653
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family
Back Show alignment and domain information
Probab=83.86 E-value=0.7 Score=35.00 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=24.0
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
.+|-+..++|||++.|.++|++++++.
T Consensus 176 ~~d~~~~s~~K~l~~p~g~G~l~~~~~ 202 (356)
T cd06451 176 GVDVAYTGSQKALGAPPGLGPIAFSER 202 (356)
T ss_pred CccEEEecCchhccCCCCcceeEECHH
Confidence 478899999999999999999999764
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
>PRK14012 cysteine desulfurase; Provisional
Back Show alignment and domain information
Probab=83.15 E-value=0.93 Score=35.37 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=22.8
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
.+|.+++++||+ +.|.++|++++++..
T Consensus 196 ~~D~~~~s~~K~-~gp~g~G~l~~~~~~ 222 (404)
T PRK14012 196 KVDLMSFSAHKI-YGPKGIGALYVRRKP 222 (404)
T ss_pred CCCEEEEehhhc-cCCCceEEEEEecCC
Confidence 489999999995 468899999998753
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue
Back Show alignment and domain information
Probab=82.72 E-value=0.96 Score=34.71 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=24.3
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
.+|=++.++|| |+.|.++|++++|+..
T Consensus 191 ~~D~~~~s~~K-l~gp~G~g~l~v~~~~ 217 (371)
T PF00266_consen 191 GADFLVFSSHK-LGGPPGLGFLYVRPEA 217 (371)
T ss_dssp TESEEEEESTS-TTSSSTEEEEEEEHHH
T ss_pred ccceeeecccc-cCCCCchhhheehhhh
Confidence 57889999999 8889999999999854
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
>PLN02409 serine--glyoxylate aminotransaminase
Back Show alignment and domain information
Probab=81.69 E-value=0.99 Score=35.48 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=24.1
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
.+|-++...|||++.|.++|.++++++
T Consensus 191 ~~D~~~~s~~K~l~~P~G~G~l~~~~~ 217 (401)
T PLN02409 191 GVDVALTGSQKALSLPTGLGIVCASPK 217 (401)
T ss_pred CccEEEEcCccccCcCCCcceeEECHH
Confidence 478999999999999999999988765
>KOG1549|consensus
Back Show alignment and domain information
Probab=81.27 E-value=1 Score=36.80 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.6
Q ss_pred cCCeeeecccccCCCCCCceeEEEeC
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRH 51 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd 51 (102)
.||=.+++.|||++.|- ||+|++|.
T Consensus 233 n~D~~s~s~HK~ygp~~-iGaLYvr~ 257 (428)
T KOG1549|consen 233 NADFLSISAHKIYGPPG-IGALYVRR 257 (428)
T ss_pred CchheeeecccccCCCc-ceEEEEcc
Confidence 37889999999999988 99999996
>PLN02271 serine hydroxymethyltransferase
Back Show alignment and domain information
Probab=80.36 E-value=1.7 Score=36.89 Aligned_cols=28 Identities=29% Similarity=0.352 Sum_probs=25.0
Q ss_pred CCcCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 24 QVLADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 24 ie~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
+..||-++...||||.-|.+ |++++|+.
T Consensus 349 ~~~aDvvt~TTHKtLrGPrG-G~I~~r~~ 376 (586)
T PLN02271 349 FDYCDIVTSTTHKSLRGPRG-GIIFYRKG 376 (586)
T ss_pred CcCCcEEEeCCcccCCCCCc-eEEEeccc
Confidence 56799999999999999999 88888764
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 102
d1js3a_ 476
c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa)
3e-10 d1pmma_ 450
c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {
8e-05
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476
Back Hide information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]
Score = 52.9 bits (126), Expect = 3e-10
Identities = 21/75 (28%), Positives = 31/75 (41%)
Query: 27 ADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQC 86
ADS +NPHK L CS + ++ LT YL + D +
Sbjct: 294 ADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPL 353
Query: 87 GRKPDVLKFWFMWKA 101
GR+ LK WF+++
Sbjct: 354 GRRFRSLKMWFVFRM 368
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]
Score = 37.5 bits (86), Expect = 8e-05
Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 15/95 (15%)
Query: 11 SQAGGLDHFHQP------RQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASAS 64
+ G L F P R S++ + HK AP C + R + L + +
Sbjct: 243 ASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVD 302
Query: 65 YLFQKDKFYDTKYDSGDKHIQCGRKPDVLKFWFMW 99
YL G I R + +
Sbjct: 303 YL---------GGQIGTFAINFSRPAGQVIAQYYE 328
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 102
d1js3a_ 476
DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]
99.87 d1pmma_ 450
Glutamate decarboxylase beta, GadB {Escherichia co
99.52 d3bc8a1 445
Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu
96.86 d2z67a1 434
Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco
96.75 d1elua_ 381
Cystine C-S lyase C-des {Synechocystis sp. [TaxId:
95.0 d1jf9a_ 405
NifS-like protein/selenocysteine lyase {Escherichi
92.77 d1t3ia_ 408
Probable cysteine desulfurase SufS {Synechocystis
91.09 d1m32a_ 361
2-aminoethylphosphonate transaminase {Salmonella t
89.71 d2bkwa1 382
Alanine-glyoxylate aminotransferase {Baker's yeast
88.02 d1eg5a_ 376
NifS-like protein/selenocysteine lyase {Thermotoga
86.04 d2e7ja1 364
Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl
85.12 d1c4ka2 462
Ornithine decarboxylase major domain {Lactobacillu
80.17
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.87 E-value=1.5e-23 Score=165.00 Aligned_cols=89 Identities=25% Similarity=0.390 Sum_probs=70.7
Q ss_pred CCCcccccccCCCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCCcC
Q psy8011 12 QAGGLDHFHQPRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKPD 91 (102)
Q Consensus 12 ~~~ef~~~~~~gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr~~ 91 (102)
-.++++++. +||++||||++||||||++|++||++++|++..+..++...+.|+..........+|+++++++|||+++
T Consensus 280 ~~~~~~~~~-~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~ 358 (476)
T d1js3a_ 280 ICPEFRHLL-NGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFR 358 (476)
T ss_dssp GSTTTGGGG-TTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCT
T ss_pred hhcchhhhh-cCCcccceeeecCccccccCCcceeecccchHHHHHHHhcChhhhccccccccccccccccccccchhhH
Confidence 357788998 7999999999999999999999999999999998888988999998765544567789999999999999
Q ss_pred hHHHHHhhhc
Q psy8011 92 VLKFWFMWKA 101 (102)
Q Consensus 92 aLklW~~lr~ 101 (102)
|||+|++|+.
T Consensus 359 al~lw~~l~~ 368 (476)
T d1js3a_ 359 SLKMWFVFRM 368 (476)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999985
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=7.6e-16 Score=119.67 Aligned_cols=75 Identities=20% Similarity=0.238 Sum_probs=63.0
Q ss_pred cccccCCCCcCCeeeecccccCCCCCCceeEEEeCchHHHHHhhCCCccccccCccCCCcccCCCcccCCCCCc-ChHHH
Q psy8011 17 DHFHQPRQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLTECHSASASYLFQKDKFYDTKYDSGDKHIQCGRKP-DVLKF 95 (102)
Q Consensus 17 ~~~~~~gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~~~~~~~a~Yl~~~~~~~~~~~d~~~~tle~SRr~-~aLkl 95 (102)
.++. .|+++||||++|+||||++|++||++++|++..+...+...+.|+... .+++++++||++ .++++
T Consensus 256 ~~~~-~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~---------~~~~~~~~sr~~~~~~~~ 325 (450)
T d1pmma_ 256 IVWD-FRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQ---------IGTFAINFSRPAGQVIAQ 325 (450)
T ss_dssp CCCS-TTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEEEETTEE---------EEECCSCCSCBSHHHHHH
T ss_pred hhhh-hcccceeEeecChhhccCCCCCeeEEEecChhhhhhhcccccCcCCCC---------cCCCcccCccchHHHHHH
Confidence 3444 599999999999999999999999999999988877777788888532 357899999995 67789
Q ss_pred HHhhhc
Q psy8011 96 WFMWKA 101 (102)
Q Consensus 96 W~~lr~ 101 (102)
|+.++.
T Consensus 326 ~~~l~~ 331 (450)
T d1pmma_ 326 YYEFLR 331 (450)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 999874
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.86 E-value=0.00013 Score=53.88 Aligned_cols=34 Identities=12% Similarity=0.098 Sum_probs=30.4
Q ss_pred CCCcCCeeeecccccCCCCCCceeEEEeCchHHH
Q psy8011 23 RQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLT 56 (102)
Q Consensus 23 gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~ 56 (102)
+++.+|++++++||++++|+++|++++|+...+.
T Consensus 249 ~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~ 282 (445)
T d3bc8a1 249 RVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQ 282 (445)
T ss_dssp HHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHH
T ss_pred CcCCcceEEecCccccccCCCCceeeeCChHHHH
Confidence 4678999999999999999999999999977654
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]
Probab=96.75 E-value=0.00027 Score=52.05 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=30.4
Q ss_pred CCCcCCeeeecccccCCCCCCceeEEEeCchHHH
Q psy8011 23 RQVLADSVTWNPHKLLTAPQQCSVFLTRHQSVLT 56 (102)
Q Consensus 23 gie~ADSis~D~HK~L~~P~~cg~ll~rd~~~l~ 56 (102)
|...||+++.++||++++|.++++++++++..+.
T Consensus 265 ~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~ 298 (434)
T d2z67a1 265 FKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIK 298 (434)
T ss_dssp HTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHH
T ss_pred ccCCcceEEEcCccccccCCCccccccCcHHHHH
Confidence 5668999999999999999999999999987654
>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]
Probab=95.00 E-value=0.0072 Score=42.99 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=25.8
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
.+|.+++++|||++.|.++|++++|...
T Consensus 201 ~~D~~~~s~~K~~~~p~G~g~l~~~~~~ 228 (381)
T d1elua_ 201 EVDYYAFTGHKWFAGPAGVGGLYIHGDC 228 (381)
T ss_dssp CCSEEEEESSSTTCCCTTCEEEEECTTT
T ss_pred ccccccccccccccccchhhHHHhhHHH
Confidence 5899999999999999999999998764
>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]
Probab=92.77 E-value=0.025 Score=41.04 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.9
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
.+|-++.++|||+ -|.++|++++++.
T Consensus 215 ~~D~~~~s~hK~~-Gp~G~g~l~v~~~ 240 (405)
T d1jf9a_ 215 DCDFYVFSGHKLY-GPTGIGILYVKEA 240 (405)
T ss_dssp TCSEEEEEGGGTT-SCSSCEEEEECHH
T ss_pred CCceeeccccccc-cCCCceeeeechh
Confidence 3899999999996 5999999999764
>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=91.09 E-value=0.05 Score=39.39 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=23.7
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
.+|-+++++|||+ -|.++|++++|+..
T Consensus 215 ~~D~~~~s~hK~~-gp~G~g~l~v~~~~ 241 (408)
T d1t3ia_ 215 DCDWLVASGHKMC-APTGIGFLYGKEEI 241 (408)
T ss_dssp TCSEEEEEGGGTT-SCTTCEEEEECHHH
T ss_pred CCceEEecccccc-CCCCccccccchhh
Confidence 5799999999995 69999999998764
>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]
Probab=89.71 E-value=0.085 Score=36.60 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=25.3
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
.+|-++..+|||++.|.+.|++++++..
T Consensus 179 ~~D~~~~s~~K~l~gp~G~g~l~~~~~~ 206 (361)
T d1m32a_ 179 HIDYLISSANKCIQGVPGFAFVIAREQK 206 (361)
T ss_dssp TCSEEEEESSSTTCCCSSEEEEEEEHHH
T ss_pred ccceEEeeecccccCCCCceEEEechhh
Confidence 4899999999999999999999998643
>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.02 E-value=0.12 Score=36.34 Aligned_cols=28 Identities=21% Similarity=0.115 Sum_probs=25.8
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
.+|-++...|||+..|-++|+++++++.
T Consensus 189 giD~~~~s~~K~l~gP~G~g~l~vs~~~ 216 (382)
T d2bkwa1 189 GVDFALTASQKAIGAPAGLSISLCSSRF 216 (382)
T ss_dssp TCSEEEEESSSTTCCCSCEEEEEECHHH
T ss_pred CeeEEeecccccCcCCCchhhhhccHHH
Confidence 5899999999999999999999998764
>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]
Probab=86.04 E-value=0.24 Score=34.64 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=23.3
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCch
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQS 53 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~~ 53 (102)
.+|-++.++||| +.|.++++++++...
T Consensus 193 ~~D~~~~s~~K~-~gp~G~~~l~~~~~~ 219 (376)
T d1eg5a_ 193 EVDYASFSAHKF-HGPKGVGITYIRKGV 219 (376)
T ss_dssp CCSEEEEEGGGG-TSCTTCEEEEECTTS
T ss_pred Cccceeccccee-ecCCCceeEEeccCc
Confidence 479999999999 579999999997653
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=85.12 E-value=0.19 Score=34.64 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=23.2
Q ss_pred CCeeeecccccCCCCCCceeEEEeCc
Q psy8011 27 ADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 27 ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
+|.++.++||++..|-.+|++..++.
T Consensus 193 ~D~~~~S~~K~~~~~g~~g~l~~~~~ 218 (364)
T d2e7ja1 193 ADFIVGSGHKSMAASGPIGVMGMKEE 218 (364)
T ss_dssp CSEEEEEHHHHSSCCSSCEEEEECTT
T ss_pred cceeeeccccccCCCCCEEEEEECHH
Confidence 79999999999999998998887764
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=80.17 E-value=0.34 Score=35.04 Aligned_cols=27 Identities=19% Similarity=0.019 Sum_probs=24.2
Q ss_pred cCCeeeecccccCCCCCCceeEEEeCc
Q psy8011 26 LADSVTWNPHKLLTAPQQCSVFLTRHQ 52 (102)
Q Consensus 26 ~ADSis~D~HK~L~~P~~cg~ll~rd~ 52 (102)
.+|.++..+||+|..+-+++++.+++.
T Consensus 238 ~~D~~~~S~HK~lg~~~~g~ll~~~~~ 264 (462)
T d1c4ka2 238 PGIIVVQSVHKQQAGFSQTSQIHKKDS 264 (462)
T ss_dssp CEEEEEECHHHHSSCCTTCEEEEEECG
T ss_pred CccEEEEecCcccccccceEEEEeccc
Confidence 469999999999999999999988874
