Psyllid ID: psy8015

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
MLIVFVSGSVSGAVAKYVTYLSGHSKRLDCLALTSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVKAGYSMPIIG
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHcccccccEEEEEcccccccccEEEccccccEEEEEEEHHHccccccccccccccEEEEccccccccccccccEEEEccccccccHHHHHHcccccEEEEEEccccEEEEEEEEEcccccEEEEEEcEEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccHHHHHHHHHHcccccHHHHHHHEEccccccEEEHHHcHHHEcHHHHHHHHccHHHHHHccccEEEEEccHHHccHHHccEEEEEEccEEccccHHHHHcEEEEEEEEEEEcccccEEEEEEEEccccEEEEEccEEEEEcccccHHccccccccc
Coil and Loop (DISEMBL)
MLIVFVSGSVSGAVAKYVTYLsghskrldclaltsntkqsttlptfipnsfnINVYYYlsggplsstidpdhdydliadgrasfgdngpydaihvgaayprypeIFIHHLKsggrlvipigdtkQQMLTIYDkfhngtidiqhWGVVQVGLLYDvkagysmpiig
Flexible Loop (DISEMBL)
MLIVFVSGSVSGAVAKYVTYLSGHSKRLDCLALTsntkqsttlptfipnsFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVKAGYSMPIIG
Low Complexity Region (SEG)
MLIVFvsgsvsgavaKYVTYLSGHSKRLDCLALTSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVKAGYSMPIIG
Disordered region (IsUnstruct)
*LIVFVSGSVSGAVAKYVTYLSGHSKRLDCLALTSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVKAGYSM****
Disordered Region (DISOPRED)
**IV***GSVSGAVAKYVTYLSGHSKRLDCLALTSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVKAGYS*P*I*
Disordered Region (DISEMBL)
MLIVFVSGSVSGAVAKYVTYLSGHSKRLDCLALTSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVKAGYSMPIIG
Disordered Region (DISPRO)
MLIVFVSGSVSGAVAKYVTYLSGHSKRLDCLALTSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVKAGYS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLIVFVSGSVSGAVAKYVTYLSGHSKRLDCLALTSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVKAGYSMPIIG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	165	2.2.26 [Sep-21-2011]
P22062	227	Protein-L-isoaspartate(D-	yes	N/A	0.406	0.295	0.470	9e-13
P22061	227	Protein-L-isoaspartate(D-	no	N/A	0.406	0.295	0.470	2e-12
Q5F3N1	228	Protein-L-isoaspartate(D-	yes	N/A	0.406	0.293	0.455	2e-12
Q4R5H0	227	Protein-L-isoaspartate(D-	N/A	N/A	0.406	0.295	0.455	2e-12
P23506	227	Protein-L-isoaspartate(D-	no	N/A	0.406	0.295	0.455	3e-12
P80895	227	Protein-L-isoaspartate(D-	yes	N/A	0.406	0.295	0.455	3e-12
Q5RA89	227	Protein-L-isoaspartate(D-	no	N/A	0.406	0.295	0.455	3e-12
Q92047	228	Protein-L-isoaspartate(D-	yes	N/A	0.406	0.293	0.455	4e-12
Q42539	230	Protein-L-isoaspartate O-	yes	N/A	0.393	0.282	0.5	5e-12
P15246	227	Protein-L-isoaspartate(D-	yes	N/A	0.406	0.295	0.455	7e-12

>sp|P22062|PIMT_RAT Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Rattus norvegicus GN=Pcmt1 PE=1 SV=2

 Score = 72.8 bits (177), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKF 134
           ++ DGR  F +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct: 139 VVGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 198

Query: 135 HNGTIDIQ 142
            +G++ ++
Sbjct: 199 QDGSVKMK 206

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 7EC: 7

>sp|P22061|PIMT_HUMAN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Homo sapiens GN=PCMT1 PE=1 SV=4

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKF 134
           ++ DGR  + +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct: 139 VVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 198

Query: 135 HNGTIDIQ 142
            +G+I ++
Sbjct: 199 QDGSIKMK 206

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q5F3N1|PIMT_CHICK Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Gallus gallus GN=PCMT1 PE=2 SV=3

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKF 134
           ++ DGR  + +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct: 139 IVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 198

Query: 135 HNGTIDIQ 142
            +G++ ++
Sbjct: 199 EDGSVKMK 206

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q4R5H0|PIMT_MACFA Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Macaca fascicularis GN=PCMT1 PE=2 SV=3

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKF 134
           ++ DGR  + +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct: 139 VVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 198

Query: 135 HNGTIDIQ 142
            +G++ ++
Sbjct: 199 QDGSVKMK 206

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P23506|PIMT_MOUSE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Mus musculus GN=Pcmt1 PE=1 SV=3

 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKF 134
           ++ DGR  + +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct: 139 VVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 198

Query: 135 HNGTIDIQ 142
            +G++ ++
Sbjct: 199 QDGSVKMK 206

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P80895|PIMT_PIG Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Sus scrofa GN=PCMT1 PE=1 SV=3

 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKF 134
           ++ DGR  + +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct: 139 VVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 198

Query: 135 HNGTIDIQ 142
            +G++ ++
Sbjct: 199 QDGSVKMK 206

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q5RA89|PIMT_PONAB Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Pongo abelii GN=PCMT1 PE=2 SV=3

 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKF 134
           ++ DGR  + +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct: 139 VVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 198

Query: 135 HNGTIDIQ 142
            +G++ ++
Sbjct: 199 QDGSVKMK 206

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q92047|PIMT_DANRE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Danio rerio GN=pcmt PE=2 SV=3

 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKF 134
           ++ DGR  F +  PYDAIHVGAA P  P+  +  LK GGRL++P+G     QML  YDK 
Sbjct: 139 IVGDGRMGFTEEAPYDAIHVGAAAPTVPQALLDQLKPGGRLILPVGPAGGNQMLEQYDKL 198

Query: 135 HNGTIDIQ 142
            +G+  ++
Sbjct: 199 EDGSTKMK 206

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q42539|PIMT_ARATH Protein-L-isoaspartate O-methyltransferase OS=Arabidopsis thaliana GN=PCM PE=2 SV=3

 Score = 70.5 bits (171), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 77  IADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHN 136
           + DGR  + +  PYDAIHVGAA P  PE  I  LK GGRLVIP+G+  Q  L + DK  +
Sbjct: 146 VGDGRQGWAEFAPYDAIHVGAAAPEIPEALIDQLKPGGRLVIPVGNIFQD-LQVVDKNSD 204

Query: 137 GTIDIQ 142
           G++ I+
Sbjct: 205 GSVSIK 210

Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. This enzyme does not act on D-aspartyl residues.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P15246|PIMT_BOVIN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Bos taurus GN=PCMT1 PE=1 SV=2

 Score = 69.7 bits (169), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKF 134
           ++ DGR  +    PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct: 139 VVGDGRMGYAAEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 198

Query: 135 HNGTIDIQ 142
            +G++ ++
Sbjct: 199 QDGSVKMK 206

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
149039521	286	protein-L-isoaspartate (D-aspartate) O-m	0.406	0.234	0.470	3e-11
149039523	285	protein-L-isoaspartate (D-aspartate) O-m	0.406	0.235	0.470	3e-11
220787	196	isoaspartyl protein carboxyl methyltrans	0.406	0.341	0.470	4e-11
149039520	197	protein-L-isoaspartate (D-aspartate) O-m	0.406	0.340	0.470	4e-11
149039522	196	protein-L-isoaspartate (D-aspartate) O-m	0.406	0.341	0.470	4e-11
603467	227	protein carboxyl methyltransferase [Ratt	0.406	0.295	0.470	4e-11
354983499	251	protein-L-isoaspartate(D-aspartate) O-me	0.406	0.266	0.470	5e-11
56961640	227	protein-L-isoaspartate(D-aspartate) O-me	0.406	0.295	0.470	5e-11
354983497	250	protein-L-isoaspartate(D-aspartate) O-me	0.406	0.268	0.470	5e-11
410041321	251	PREDICTED: protein-L-isoaspartate(D-aspa	0.406	0.266	0.470	5e-11

>gi|149039521|gb|EDL93683.1| protein-L-isoaspartate (D-aspartate) O-methyltransferase 1, isoform CRA_b [Rattus norvegicus]

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKF 134
           ++ DGR  F +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct: 197 VVGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 256

Query: 135 HNGTIDIQ 142
            +G++ ++
Sbjct: 257 QDGSVKMK 264

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149039523|gb|EDL93685.1| protein-L-isoaspartate (D-aspartate) O-methyltransferase 1, isoform CRA_d [Rattus norvegicus]

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKF 134
           ++ DGR  F +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct: 197 VVGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 256

Query: 135 HNGTIDIQ 142
            +G++ ++
Sbjct: 257 QDGSVKMK 264

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|220787|dbj|BAA02034.1| isoaspartyl protein carboxyl methyltransferase [Rattus norvegicus]

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKF 134
           ++ DGR  F +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct: 108 VVGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 167

Query: 135 HNGTIDIQ 142
            +G++ ++
Sbjct: 168 QDGSVKMK 175

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149039520|gb|EDL93682.1| protein-L-isoaspartate (D-aspartate) O-methyltransferase 1, isoform CRA_a [Rattus norvegicus]

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKF 134
           ++ DGR  F +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct: 108 VVGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 167

Query: 135 HNGTIDIQ 142
            +G++ ++
Sbjct: 168 QDGSVKMK 175

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149039522|gb|EDL93684.1| protein-L-isoaspartate (D-aspartate) O-methyltransferase 1, isoform CRA_c [Rattus norvegicus]

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKF 134
           ++ DGR  F +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct: 108 VVGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 167

Query: 135 HNGTIDIQ 142
            +G++ ++
Sbjct: 168 QDGSVKMK 175

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|603467|gb|AAA60742.1| protein carboxyl methyltransferase [Rattus norvegicus]

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKF 134
           ++ DGR  F +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct: 139 VVGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 198

Query: 135 HNGTIDIQ 142
            +G++ ++
Sbjct: 199 QDGSVKMK 206

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|354983499|ref|NP_001238981.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 5 [Homo sapiens]

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKF 134
           ++ DGR  + +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct: 162 VVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 221

Query: 135 HNGTIDIQ 142
            +G+I ++
Sbjct: 222 QDGSIKMK 229

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|56961640|ref|NP_037205.2| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rattus norvegicus] gi|124106314|sp|P22062.2|PIMT_RAT RecName: Full=Protein-L-isoaspartate(D-aspartate) O-methyltransferase; Short=PIMT; AltName: Full=L-isoaspartyl protein carboxyl methyltransferase; AltName: Full=Protein L-isoaspartyl/D-aspartyl methyltransferase; AltName: Full=Protein-beta-aspartate methyltransferase gi|56789730|gb|AAH88417.1| Protein-L-isoaspartate (D-aspartate) O-methyltransferase 1 [Rattus norvegicus]

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKF 134
           ++ DGR  F +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct: 139 VVGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 198

Query: 135 HNGTIDIQ 142
            +G++ ++
Sbjct: 199 QDGSVKMK 206

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|354983497|ref|NP_001238980.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 4 [Homo sapiens]

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKF 134
           ++ DGR  + +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct: 162 VVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 221

Query: 135 HNGTIDIQ 142
            +G+I ++
Sbjct: 222 QDGSIKMK 229

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410041321|ref|XP_003950977.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase [Pan troglodytes]

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKF 134
           ++ DGR  + +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct: 162 VVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 221

Query: 135 HNGTIDIQ 142
            +G+I ++
Sbjct: 222 QDGSIKMK 229

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
RGD|3268	227	Pcmt1 "protein-L-isoaspartate	0.460	0.334	0.461	1e-13
UNIPROTKB|P22062	227	Pcmt1 "Protein-L-isoaspartate(	0.460	0.334	0.461	1e-13
UNIPROTKB|F1NJV4	197	PCMT1 "Protein-L-isoaspartate	0.460	0.385	0.448	1.6e-13
UNIPROTKB|Q5F3N1	228	PCMT1 "Protein-L-isoaspartate(	0.460	0.333	0.448	1.6e-13
UNIPROTKB|B7Z972	192	PCMT1 "Protein-L-isoaspartate	0.460	0.395	0.461	1.6e-13
UNIPROTKB|P22061	227	PCMT1 "Protein-L-isoaspartate(	0.460	0.334	0.461	1.6e-13
UNIPROTKB|J9JIK8	208	PCMT1 "Protein-L-isoaspartate	0.460	0.365	0.448	2.1e-13
UNIPROTKB|P80895	227	PCMT1 "Protein-L-isoaspartate(	0.460	0.334	0.448	2.1e-13
MGI|MGI:97502	227	Pcmt1 "protein-L-isoaspartate	0.460	0.334	0.448	2.1e-13
UNIPROTKB|J3KP72	285	PCMT1 "Protein-L-isoaspartate	0.460	0.266	0.461	2.3e-13

RGD|3268 Pcmt1 "protein-L-isoaspartate (D-aspartate) O-methyltransferase 1" [Rattus norvegicus (taxid:10116)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 36/78 (46%), Positives = 49/78 (62%)

Query:    76 LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTK-QQMLTIYDKF 134
             ++ DGR  F +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct:   139 VVGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 198

Query:   135 HNGTIDIQH-WGVVQVGL 151
              +G++ ++   GV+ V L
Sbjct:   199 QDGSVKMKPLMGVIYVPL 216

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA;ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006479 "protein methylation" evidence=ISO

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0046498 "S-adenosylhomocysteine metabolic process" evidence=IDA

GO:0046500 "S-adenosylmethionine metabolic process" evidence=IDA

UNIPROTKB|P22062 Pcmt1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Rattus norvegicus (taxid:10116)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 36/78 (46%), Positives = 49/78 (62%)

Query:    76 LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTK-QQMLTIYDKF 134
             ++ DGR  F +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct:   139 VVGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 198

Query:   135 HNGTIDIQH-WGVVQVGL 151
              +G++ ++   GV+ V L
Sbjct:   199 QDGSVKMKPLMGVIYVPL 216

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1NJV4 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Gallus gallus (taxid:9031)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 35/78 (44%), Positives = 49/78 (62%)

Query:    76 LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTK-QQMLTIYDKF 134
             ++ DGR  + +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct:   108 IVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 167

Query:   135 HNGTIDIQH-WGVVQVGL 151
              +G++ ++   GV+ V L
Sbjct:   168 EDGSVKMKPLMGVIYVPL 185

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5F3N1 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Gallus gallus (taxid:9031)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 35/78 (44%), Positives = 49/78 (62%)

Query:    76 LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTK-QQMLTIYDKF 134
             ++ DGR  + +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct:   139 IVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 198

Query:   135 HNGTIDIQH-WGVVQVGL 151
              +G++ ++   GV+ V L
Sbjct:   199 EDGSVKMKPLMGVIYVPL 216

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|B7Z972 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 36/78 (46%), Positives = 49/78 (62%)

Query:    76 LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTK-QQMLTIYDKF 134
             ++ DGR  + +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct:   104 VVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 163

Query:   135 HNGTIDIQH-WGVVQVGL 151
              +G+I ++   GV+ V L
Sbjct:   164 QDGSIKMKPLMGVIYVPL 181

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|P22061 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 36/78 (46%), Positives = 49/78 (62%)

Query:    76 LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTK-QQMLTIYDKF 134
             ++ DGR  + +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct:   139 VVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 198

Query:   135 HNGTIDIQH-WGVVQVGL 151
              +G+I ++   GV+ V L
Sbjct:   199 QDGSIKMKPLMGVIYVPL 216

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=TAS

GO:0030091 "protein repair" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0006479 "protein methylation" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|J9JIK8 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Sus scrofa (taxid:9823)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 35/78 (44%), Positives = 49/78 (62%)

Query:    76 LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTK-QQMLTIYDKF 134
             ++ DGR  + +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct:   120 VVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 179

Query:   135 HNGTIDIQH-WGVVQVGL 151
              +G++ ++   GV+ V L
Sbjct:   180 QDGSVKMKPLMGVIYVPL 197

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

UNIPROTKB|P80895 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Sus scrofa (taxid:9823)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 35/78 (44%), Positives = 49/78 (62%)

Query:    76 LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTK-QQMLTIYDKF 134
             ++ DGR  + +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct:   139 VVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 198

Query:   135 HNGTIDIQH-WGVVQVGL 151
              +G++ ++   GV+ V L
Sbjct:   199 QDGSVKMKPLMGVIYVPL 216

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

MGI|MGI:97502 Pcmt1 "protein-L-isoaspartate (D-aspartate) O-methyltransferase 1" [Mus musculus (taxid:10090)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 35/78 (44%), Positives = 49/78 (62%)

Query:    76 LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTK-QQMLTIYDKF 134
             ++ DGR  + +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct:   139 VVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 198

Query:   135 HNGTIDIQH-WGVVQVGL 151
              +G++ ++   GV+ V L
Sbjct:   199 QDGSVKMKPLMGVIYVPL 216

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0006479 "protein methylation" evidence=IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0046498 "S-adenosylhomocysteine metabolic process" evidence=ISO

GO:0046500 "S-adenosylmethionine metabolic process" evidence=ISO

UNIPROTKB|J3KP72 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 176 (67.0 bits), Expect = 2.3e-13, P = 2.3e-13
 Identities = 36/78 (46%), Positives = 49/78 (62%)

Query:    76 LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTK-QQMLTIYDKF 134
             ++ DGR  + +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct:   197 VVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 256

Query:   135 HNGTIDIQH-WGVVQVGL 151
              +G+I ++   GV+ V L
Sbjct:   257 QDGSIKMKPLMGVIYVPL 274

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0046498 "S-adenosylhomocysteine metabolic process" evidence=IEA

GO:0046500 "S-adenosylmethionine metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!
4th Layer	2.1.1.77	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	165
pfam01135	210	pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat	2e-17
COG2518	209	COG2518, Pcm, Protein-L-isoaspartate carboxylmethy	1e-15
PRK00312	212	PRK00312, pcm, protein-L-isoaspartate O-methyltran	3e-13
PRK13942	212	PRK13942, PRK13942, protein-L-isoaspartate O-methy	4e-11
TIGR00080	215	TIGR00080, pimt, protein-L-isoaspartate(D-aspartat	8e-11
PRK13944	205	PRK13944, PRK13944, protein-L-isoaspartate O-methy	3e-05
PRK13943	322	PRK13943, PRK13943, protein-L-isoaspartate O-methy	1e-04
TIGR04364	394	TIGR04364, methyltran_FxLD, methyltransferase, FxL	6e-04
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	0.004

>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)

 Score = 75.5 bits (186), Expect = 2e-17
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query: 78  ADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNG 137
            DGR  + +  PYDAIHVGAA P  PE  I  LK GGRLVIP+G    Q+L  +DK ++G
Sbjct: 131 GDGRQGWPEFAPYDAIHVGAAAPEIPEALIDQLKEGGRLVIPVGPNGNQVLQQFDKRNDG 190

Query: 138 TIDI 141
           ++ I
Sbjct: 191 SVVI 194

Length = 210

>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 70.7 bits (174), Expect = 1e-15
 Identities = 27/72 (37%), Positives = 35/72 (48%)

Query: 78  ADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNG 137
            DG   + +  PYD I V AA P  PE  +  LK GGRLVIP+G    Q L    K  +G
Sbjct: 127 GDGSKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVGSGPAQRLLRITKDGDG 186

Query: 138 TIDIQHWGVVQV 149
             + +    V+ 
Sbjct: 187 NFERRDLFNVRF 198

Length = 209

>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase; Reviewed

 Score = 64.5 bits (158), Expect = 3e-13
 Identities = 23/56 (41%), Positives = 29/56 (51%)

Query: 78  ADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDK 133
            DG   +    P+D I V AA P  P   +  LK GG LV P+G  +QQ+LT   K
Sbjct: 133 GDGWKGWPAYAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVGGEEQQLLTRVRK 188

Length = 212

>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 58.5 bits (142), Expect = 4e-11
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFH 135
           ++ DG   + +N PYD I+V AA P  P+  I  LK GG +VIP+G   Q+ L   +K  
Sbjct: 132 IVGDGTLGYEENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVGSYSQE-LIRVEK-D 189

Query: 136 NGTIDIQHWGVV 147
           NG I  +  G V
Sbjct: 190 NGKIIKKKLGEV 201

Length = 212

>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate) O-methyltransferase

 Score = 57.9 bits (140), Expect = 8e-11
 Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 78  ADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNG 137
            DG   +    PYD I+V AA P+ PE  I  LK GG LV+P+G+   Q+L   +K   G
Sbjct: 135 GDGTQGWEPLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPVGE-YLQVLKRAEK-RGG 192

Query: 138 TIDIQ 142
            I I+
Sbjct: 193 EIIIK 197

This is an all-kingdom (but not all species) full-length ortholog enzyme for repairing aging proteins. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt [Protein fate, Protein modification and repair]. Length = 215

>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 20/50 (40%), Positives = 27/50 (54%)

Query: 79  DGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQML 128
           DG+     + P+DAI V AA    P   +  LK GG LVIP+ +   Q+L
Sbjct: 132 DGKRGLEKHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPVEEGVGQVL 181

Length = 205

>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 79  DGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPI 120
           DG     +  PYD I V       PE +   LK GGR+++PI
Sbjct: 139 DGYYGVPEFAPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPI 180

Length = 322

>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPI 120
           ++AD  A   +  PYD I V       P  ++  L  GGRLV+P+
Sbjct: 137 VLADAEAGVPELAPYDRIIVTVGAWDIPPAWLDQLAPGGRLVVPL 181

Members of this family resemble occur regularly in the vicinity of lantibiotic biosynthesis enzymes and their probable target, the FxLD family of putative ribosomal natural product precursor (TIGR04363). Members resemble protein-L-isoaspartate O-methyltransferase (TIGR00080) and a predicted methyltranserase, TIGR04188, of another putative peptide modification system. Length = 394

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 78  ADGRASFGDNGPYDAIHVGAAYPRYPEIF---IHHLKSGGRLVI 118
            D   +      +DA+ +G       E+       LK GGRLV+
Sbjct: 58  GDAPDALDLLEGFDAVFIGGGGGDLLELLDALASLLKPGGRLVL 101

Protein in this family function as methyltransferases. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	100.0
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	100.0
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.96
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.95
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.94
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.93
KOG1661|consensus	237		99.9
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.87
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.84
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.8
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.75
COG4122	219	Predicted O-methyltransferase [General function pr	99.7
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.69
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.67
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.67
PLN02476	278	O-methyltransferase	99.66
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.66
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.66
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.65
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.65
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.64
PRK07402	196	precorrin-6B methylase; Provisional	99.64
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.63
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.62
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.61
PLN02244	340	tocopherol O-methyltransferase	99.61
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.61
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.61
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.6
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.59
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.59
PRK11207	197	tellurite resistance protein TehB; Provisional	99.58
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.58
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.56
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.56
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.56
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.55
PRK04266	226	fibrillarin; Provisional	99.55
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.54
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.53
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.52
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.51
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.51
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.51
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.5
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.5
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.5
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.49
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.49
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.49
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.48
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.47
PLN02336	475	phosphoethanolamine N-methyltransferase	99.47
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.46
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.46
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.46
PRK14967	223	putative methyltransferase; Provisional	99.45
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.45
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.45
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.44
PRK12335	287	tellurite resistance protein TehB; Provisional	99.44
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.43
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.43
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.42
PRK08317	241	hypothetical protein; Provisional	99.42
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.42
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.42
PRK14968	188	putative methyltransferase; Provisional	99.42
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.42
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.42
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.41
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.41
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.41
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.41
PTZ00146	293	fibrillarin; Provisional	99.41
PLN03075	296	nicotianamine synthase; Provisional	99.39
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.39
PLN02336	475	phosphoethanolamine N-methyltransferase	99.39
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.39
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.39
PLN02490	340	MPBQ/MSBQ methyltransferase	99.39
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.38
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.38
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.38
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.37
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.37
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.36
PRK05785	226	hypothetical protein; Provisional	99.36
KOG1540|consensus	296		99.36
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.36
PRK04457	262	spermidine synthase; Provisional	99.36
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.36
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.35
KOG1270|consensus	282		99.35
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.35
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.34
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.34
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.34
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.34
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.33
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.32
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.32
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.32
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.32
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.31
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.31
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.3
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.3
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.29
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.28
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.28
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.26
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.26
PRK00811	283	spermidine synthase; Provisional	99.26
TIGR00438	188	rrmJ cell division protein FtsJ.	99.25
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.24
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	99.24
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.24
PRK06922	677	hypothetical protein; Provisional	99.23
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.22
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.2
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.2
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.2
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.19
COG4123	248	Predicted O-methyltransferase [General function pr	99.19
PRK06202	232	hypothetical protein; Provisional	99.18
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.18
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.18
COG2890	280	HemK Methylase of polypeptide chain release factor	99.18
KOG1663|consensus	237		99.17
COG2521	287	Predicted archaeal methyltransferase [General func	99.17
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.17
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.15
KOG1271|consensus	227		99.14
PLN02366	308	spermidine synthase	99.14
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.13
COG2520	341	Predicted methyltransferase [General function pred	99.12
PRK01581	374	speE spermidine synthase; Validated	99.12
TIGR03438	301	probable methyltransferase. This model represents	99.11
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.1
PRK03612	521	spermidine synthase; Provisional	99.09
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.08
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.08
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.08
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.07
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.07
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	99.07
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.06
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.05
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.03
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.03
KOG1541|consensus	270		99.01
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	99.01
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.0
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.0
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.99
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.98
KOG2915|consensus	314		98.93
KOG4300|consensus	252		98.93
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.91
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.89
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.87
PHA03412	241	putative methyltransferase; Provisional	98.87
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.86
PLN02672	1082	methionine S-methyltransferase	98.86
PHA03411	279	putative methyltransferase; Provisional	98.86
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.84
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.84
PLN02823	336	spermine synthase	98.84
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.75
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.74
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.72
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.72
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.71
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.71
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.66
PRK04148	134	hypothetical protein; Provisional	98.65
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.61
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.61
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.6
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.58
KOG2904|consensus	328		98.57
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.56
KOG3010|consensus	261		98.55
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.55
KOG2899|consensus	288		98.54
KOG1499|consensus	346		98.54
KOG2187|consensus	534		98.52
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.5
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.49
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.48
PRK00536	262	speE spermidine synthase; Provisional	98.43
KOG0820|consensus	315		98.43
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.42
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.42
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.41
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.4
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.36
PRK10742	250	putative methyltransferase; Provisional	98.36
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.35
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.3
COG4076	252	Predicted RNA methylase [General function predicti	98.3
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.29
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.29
KOG3420|consensus	185		98.28
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.25
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.24
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.22
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.21
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	98.2
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.19
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.18
KOG1500|consensus	517		98.14
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.12
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.12
KOG3191|consensus	209		98.11
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.09
KOG1122|consensus	460		98.05
COG4798	238	Predicted methyltransferase [General function pred	98.0
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.98
COG3897	218	Predicted methyltransferase [General function pred	97.98
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.96
KOG2361|consensus	264		97.95
KOG2671|consensus	421		97.81
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.81
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.81
KOG2730|consensus	263		97.79
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.79
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.79
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.76
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.72
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.71
KOG1975|consensus	389		97.7
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.66
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.61
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.58
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.57
KOG2940|consensus	325		97.51
PF13679	141	Methyltransf_32: Methyltransferase domain	97.5
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.49
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.48
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.44
KOG3178|consensus	342		97.41
KOG2198|consensus	375		97.35
KOG1269|consensus	364		97.25
KOG1596|consensus	317		97.23
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.17
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.17
KOG3045|consensus	325		97.14
KOG3987|consensus	288		97.12
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.11
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	97.1
KOG1709|consensus	271		97.08
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.07
COG0286	489	HsdM Type I restriction-modification system methyl	97.05
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	96.99
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	96.98
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.88
PRK11524	284	putative methyltransferase; Provisional	96.88
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	96.77
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.77
KOG1253|consensus	525		96.76
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	96.73
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.6
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	96.47
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	96.47
PRK13699	227	putative methylase; Provisional	96.46
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	96.46
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	96.45
KOG1331|consensus	293		96.38
PHA01634	156	hypothetical protein	96.24
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	96.12
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	95.97
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	95.96
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	95.91
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	95.8
KOG0023|consensus	360		95.76
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	95.56
KOG2352|consensus	482		95.48
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	95.35
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	95.35
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	95.32
KOG1562|consensus	337		95.32
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	95.24
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	95.17
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.08
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	95.02
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	95.02
KOG4589|consensus	232		94.96
COG1568	354	Predicted methyltransferases [General function pre	94.79
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.77
KOG1227|consensus	351		94.76
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	94.65
KOG4058|consensus	199		94.51
KOG0024|consensus	354		94.5
KOG1501|consensus	636		94.45
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	94.36
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	94.11
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	93.94
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	93.91
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	93.78
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	93.69
PLN02740	381	Alcohol dehydrogenase-like	93.55
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	93.46
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.25
KOG1099|consensus	294		93.15
KOG3201|consensus	201		93.05
KOG3115|consensus	249		93.01
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	92.91
KOG2360|consensus	413		92.67
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	92.63
PRK11524	284	putative methyltransferase; Provisional	92.6
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	92.6
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	92.53
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	92.45
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	92.11
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	91.98
PLN02514	357	cinnamyl-alcohol dehydrogenase	91.96
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	91.89
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	91.8
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	91.71
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	91.7
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	91.45
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	91.39
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	91.34
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	91.29
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	91.23
PLN02827	378	Alcohol dehydrogenase-like	91.18
PRK08306	296	dipicolinate synthase subunit A; Reviewed	91.16
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	91.14
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	91.03
PLN02586	360	probable cinnamyl alcohol dehydrogenase	90.99
PLN02178	375	cinnamyl-alcohol dehydrogenase	90.86
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	90.77
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	90.69
COG1255	129	Uncharacterized protein conserved in archaea [Func	90.6
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	90.33
COG0863	302	DNA modification methylase [DNA replication, recom	90.11
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	89.86
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	89.78
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	89.77
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	89.57
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	89.44
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	89.43
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	89.38
KOG2078|consensus	495		89.32
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	89.31
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	89.29
PRK03659	601	glutathione-regulated potassium-efflux system prot	88.5
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	88.42
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	88.35
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	88.11
PRK10669	558	putative cation:proton antiport protein; Provision	88.1
TIGR00497	501	hsdM type I restriction system adenine methylase (	88.09
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	87.96
COG2961	279	ComJ Protein involved in catabolism of external DN	87.77
KOG2352|consensus	482		87.58
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	86.9
PRK10458	467	DNA cytosine methylase; Provisional	86.89
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	86.62
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	86.5
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	85.95
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	85.93
PRK10083	339	putative oxidoreductase; Provisional	85.37
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	85.3
PRK13699	227	putative methylase; Provisional	85.29
KOG2651|consensus	476		85.2
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	85.12
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	84.92
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	84.81
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	84.6
cd05565	99	PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of en	84.17
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	84.03
COG4017	254	Uncharacterized protein conserved in archaea [Func	83.99
KOG1198|consensus	347		83.71
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	83.51
PRK03562	621	glutathione-regulated potassium-efflux system prot	83.46
PLN02702	364	L-idonate 5-dehydrogenase	83.26
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	82.95
COG1565	370	Uncharacterized conserved protein [Function unknow	82.92
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	81.78
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	81.33
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	81.27
KOG0822|consensus	649		81.24
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	81.22
PRK09496	453	trkA potassium transporter peripheral membrane com	81.04
cd05564	96	PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lic	80.93
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	80.34
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	80.28
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	80.18
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	80.16

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-37  Score=237.98  Aligned_cols=152  Identities=26%  Similarity=0.321  Sum_probs=143.4

Q ss_pred             cCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC
Q psy8015           7 SGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS   83 (165)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~   83 (165)
                      ..|.|.++++|+++|. .+|+++|||| |||||.|+.||+++++|+++|+++++++.|+  ++.+|+.||.+++||+..+
T Consensus        54 tis~P~~vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G  132 (209)
T COG2518          54 TISAPHMVARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKG  132 (209)
T ss_pred             eecCcHHHHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccC
Confidence            4578999999999996 4999999999 9999999999999999999999999999996  8999999999999999999


Q ss_pred             CCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCCceEEEEEEEccCCcEEEEEeeeEEEeeeccCCCCCC
Q psy8015          84 FGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVKAGYS  160 (165)
Q Consensus        84 ~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~~~~~  160 (165)
                      |++.++||+|+++++.+.+|+.|.+||||||+|++|++..+.|.+.+++|.+++.+..+.+++++|+||.++. .|+
T Consensus       133 ~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG~~~~q~l~~~~k~~~~~~~~~~l~~v~~vPl~~~~-~~~  208 (209)
T COG2518         133 WPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVGSGPAQRLLRITKDGDGNFERRDLFNVRFVPLVGGD-GFF  208 (209)
T ss_pred             CCCCCCcCEEEEeeccCCCCHHHHHhcccCCEEEEEEccCCcEEEEEEEEcCCCcEEEeeeccceeeecCCcc-ccc
Confidence            9999999999999999999999999999999999999976679999999998888999999999999999964 554

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=100.00  E-value=1.6e-33  Score=218.66  Aligned_cols=150  Identities=25%  Similarity=0.304  Sum_probs=127.1

Q ss_pred             ecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC---cEEEEeCCHHHHHhcc--cccCCCCCeEEEEcc
Q psy8015           6 VSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP---NSFNINVYYYLSGGPL--SSTIDPDHDYDLIAD   79 (165)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~---~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD   79 (165)
                      ++.|+|..+++|+++|. ++|+++|||| |||||+|+.||++++   +|+++|+++++++.|+  ++.++..||+++++|
T Consensus        53 ~~is~P~~~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd  131 (209)
T PF01135_consen   53 QTISAPSMVARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD  131 (209)
T ss_dssp             EEE--HHHHHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-
T ss_pred             eechHHHHHHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc
Confidence            35579999999999996 6999999999 999999999999974   6999999999999996  778889999999999


Q ss_pred             CCCCCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCCceEEEEEEEccCCcEEEEEeeeEEEeeeccCC
Q psy8015          80 GRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVK  156 (165)
Q Consensus        80 ~~~~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~  156 (165)
                      +..++++.++||+|+++++.+.+|+.|+++||+||+||+|+++...|.+.+++|.+++.|+.+.++.|.|+||++.+
T Consensus       132 g~~g~~~~apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~pi~~~~~~~l~~~~k~~~g~~~~~~~~~~~fvpl~~~~  208 (209)
T PF01135_consen  132 GSEGWPEEAPFDRIIVTAAVPEIPEALLEQLKPGGRLVAPIGQGGSQRLVRITKKGDGEFSREELFPVRFVPLVGGE  208 (209)
T ss_dssp             GGGTTGGG-SEEEEEESSBBSS--HHHHHTEEEEEEEEEEESSSSSEEEEEEEEETTTEEEEEEEEEE---B-BSCC
T ss_pred             hhhccccCCCcCEEEEeeccchHHHHHHHhcCCCcEEEEEEccCCceEEEEEEEeCCCcEEEEEEeeEEEEeccCCC
Confidence            99999888999999999999999999999999999999999985559999999998889999999999999999874

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.96  E-value=2.2e-27  Score=184.73  Aligned_cols=147  Identities=26%  Similarity=0.331  Sum_probs=132.9

Q ss_pred             cCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccC
Q psy8015           7 SGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADG   80 (165)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~   80 (165)
                      +.|.+..++++++.+. ..++++|||| |||||+|+.+++..   ++|+++|+++++++.|+  +++.+.+|++++++|+
T Consensus        58 ~~~~p~~~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~  136 (212)
T PRK13942         58 TISAIHMVAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG  136 (212)
T ss_pred             EeCcHHHHHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc
Confidence            3478899999999995 5899999999 99999999999886   58999999999999996  6677888999999999


Q ss_pred             CCCCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCCceEEEEEEEccCCcEEEEEeeeEEEeeeccCC
Q psy8015          81 RASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVK  156 (165)
Q Consensus        81 ~~~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~  156 (165)
                      ...+++.++||+|+++++.+++|+.+.++|||||++++++++. .+.+.+++|.+ +.++.+.++++.|+||.+..
T Consensus       137 ~~~~~~~~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~  210 (212)
T PRK13942        137 TLGYEENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVGSY-SQELIRVEKDN-GKIIKKKLGEVAFVPLIGKN  210 (212)
T ss_pred             ccCCCcCCCcCEEEECCCcccchHHHHHhhCCCcEEEEEEcCC-CcEEEEEEEEC-CEEEEEEeccEEEEecccCC
Confidence            8877777899999999999999999999999999999999875 58999999975 68999999999999999874

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.95  E-value=9.5e-27  Score=181.18  Aligned_cols=149  Identities=27%  Similarity=0.318  Sum_probs=132.9

Q ss_pred             CchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCc---EEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCC
Q psy8015           9 SVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPN---SFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRA   82 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~---V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~   82 (165)
                      +.+..++++++++. .+++++|||| ||+|++|+.|++..+.   |+++|+++++++.|+  +++.+++|++++.+|+.+
T Consensus        61 ~~p~~~~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~  139 (215)
T TIGR00080        61 SAPHMVAMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQ  139 (215)
T ss_pred             chHHHHHHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCccc
Confidence            46778899999985 5899999999 9999999999998754   999999999999996  677788899999999987


Q ss_pred             CCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCCceEEEEEEEccCCcEEEEEeeeEEEeeeccCCCCCC
Q psy8015          83 SFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVKAGYS  160 (165)
Q Consensus        83 ~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~~~~~  160 (165)
                      .++..++||+|++++..+++|+.+.++|+|||++++++++ +.+.+..++|.+ +.|..+.++++.|.||++++.+|+
T Consensus       140 ~~~~~~~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~pl~~~~~~~~  215 (215)
T TIGR00080       140 GWEPLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPVGE-YLQVLKRAEKRG-GEIIIKDVEPVAFVPLVGGEGFQG  215 (215)
T ss_pred             CCcccCCCCEEEEcCCcccccHHHHHhcCcCcEEEEEEcC-CceEEEEEEEeC-CEEEEEEeeeEEEEeCCCCccCCC
Confidence            7666678999999999999999999999999999999987 568999998865 579999999999999999886663

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.94  E-value=7.6e-26  Score=175.11  Aligned_cols=143  Identities=22%  Similarity=0.218  Sum_probs=125.6

Q ss_pred             CchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCC
Q psy8015           9 SVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGR   81 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~   81 (165)
                      +.+..++++++++. ..++++|||+ ||+|+.++.+++..   ++|+++|+++++++.|+  +++.+.. +++++.+|+.
T Consensus        56 ~~p~~~~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~  134 (205)
T PRK13944         56 SAPHMVAMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGK  134 (205)
T ss_pred             chHHHHHHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence            35677899999985 4789999999 99999999999875   68999999999999985  5666765 5999999998


Q ss_pred             CCCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCCceEEEEEEEccCCcEEEEEeeeEEEeeec
Q psy8015          82 ASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLY  153 (165)
Q Consensus        82 ~~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pl~  153 (165)
                      +.++..++||+|+++++.+++|+++.++|+|||+|++++++...|.+..++|.+ +.|+.+.++.|.|+||.
T Consensus       135 ~~~~~~~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~pl~  205 (205)
T PRK13944        135 RGLEKHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPVEEGVGQVLYKVVKRG-EKVEKRAITYVLFVPLR  205 (205)
T ss_pred             cCCccCCCccEEEEccCcchhhHHHHHhcCcCcEEEEEEcCCCceEEEEEEEeC-CEEEEEEeceEEEEecC
Confidence            777666799999999999999999999999999999999876568899999965 57999999999999984

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.93  E-value=6.4e-25  Score=170.31  Aligned_cols=146  Identities=25%  Similarity=0.290  Sum_probs=130.1

Q ss_pred             CchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC
Q psy8015           9 SVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG   85 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~   85 (165)
                      |.+...+++++.+. ..++++|||+ ||+|+++..++++.++|+++|+++++++.|+  +++.++.|++++.+|+.+.++
T Consensus        62 ~~p~~~~~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~  140 (212)
T PRK00312         62 SQPYMVARMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP  140 (212)
T ss_pred             CcHHHHHHHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC
Confidence            57788999999885 4789999999 9999999999998889999999999999996  667788899999999877766


Q ss_pred             CCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCCceEEEEEEEccCCcEEEEEeeeEEEeeeccCC
Q psy8015          86 DNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVK  156 (165)
Q Consensus        86 ~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~  156 (165)
                      ..++||+|+++...+++++.+.++|+|||+++++.++.+.+.+.+++|. ++.|..+.++++.|.|+.++.
T Consensus       141 ~~~~fD~I~~~~~~~~~~~~l~~~L~~gG~lv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~  210 (212)
T PRK00312        141 AYAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVGGEEQQLLTRVRKR-GGRFEREVLEEVRFVPLVKGE  210 (212)
T ss_pred             cCCCcCEEEEccCchhhhHHHHHhcCCCcEEEEEEcCCCceEEEEEEEc-CCeEEEEEEccEEEEecCCCC
Confidence            6689999999999999999999999999999999985555888888885 467999999999999999874

>KOG1661|consensus

Probab=99.90  E-value=1.1e-22  Score=155.75  Aligned_cols=152  Identities=27%  Similarity=0.383  Sum_probs=133.2

Q ss_pred             CchHHHHHHHHHHhcC-CCCCeEEEE-ccccHHHHHHhccCC----cEEEEeCCHHHHHhcc--cc----------cCCC
Q psy8015           9 SVSGAVAKYVTYLSGH-SKRLDCLAL-TSNTKQSTTLPTFIP----NSFNINVYYYLSGGPL--SS----------TIDP   70 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~~-~~~~~vLei-~GsG~~t~~la~~~~----~V~aiD~~~~~~~~A~--~~----------~~~~   70 (165)
                      |-+.+.+..++.|..+ .||.+.||+ +||||+|++++++++    .+++||..+++++.++  ++          .+..
T Consensus        64 SAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~  143 (237)
T KOG1661|consen   64 SAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKR  143 (237)
T ss_pred             cchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhcc
Confidence            5678899999998732 799999999 999999999998762    3599999999999984  22          2234


Q ss_pred             CCeEEEEccCCCCCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEE
Q psy8015          71 DHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQV  149 (165)
Q Consensus        71 ~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~  149 (165)
                      .++.++.||+..++++.++||+|+++++.+.+|+++.++|++||+|++|.++.+. |....+.|..++....+.+|.+.+
T Consensus       144 ~~l~ivvGDgr~g~~e~a~YDaIhvGAaa~~~pq~l~dqL~~gGrllip~~~~~~~q~~~~~dk~~~gki~~~~~f~v~y  223 (237)
T KOG1661|consen  144 GELSIVVGDGRKGYAEQAPYDAIHVGAAASELPQELLDQLKPGGRLLIPVGQDGGTQYLRQIDKNEDGKIKLRTLFSVRY  223 (237)
T ss_pred             CceEEEeCCccccCCccCCcceEEEccCccccHHHHHHhhccCCeEEEeecccCceeEEEeecccccCceeeeEeeceEE
Confidence            5789999999999999999999999999999999999999999999999997655 888888898888999999999999


Q ss_pred             eeeccCCCCCC
Q psy8015         150 GLLYDVKAGYS  160 (165)
Q Consensus       150 ~pl~~~~~~~~  160 (165)
                      +|++.....|+
T Consensus       224 vPlt~~~~q~~  234 (237)
T KOG1661|consen  224 VPLTSRESQPS  234 (237)
T ss_pred             EeccccccccC
Confidence            99999876664

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.87  E-value=3.8e-21  Score=158.02  Aligned_cols=148  Identities=15%  Similarity=0.203  Sum_probs=126.4

Q ss_pred             EecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC---cEEEEeCCHHHHHhcc--cccCCCCCeEEEEc
Q psy8015           5 FVSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP---NSFNINVYYYLSGGPL--SSTIDPDHDYDLIA   78 (165)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~---~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~g   78 (165)
                      |++.+.|...+++++++. .+++++|||+ ||+|++++.+++.++   +|+++|+++++++.|+  ++..+.+|++++.+
T Consensus        60 ~~~~~~p~l~a~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~g  138 (322)
T PRK13943         60 YSTSSQPSLMALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCG  138 (322)
T ss_pred             cccCCcHHHHHHHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC
Confidence            456778999999999985 4789999999 999999999998764   5999999999999996  56678889999999


Q ss_pred             cCCCCCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCC--CceEEEEEEEccCCcEEEEEeeeEEEeeecc
Q psy8015          79 DGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT--KQQMLTIYDKFHNGTIDIQHWGVVQVGLLYD  154 (165)
Q Consensus        79 D~~~~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~--~~~~~~~~~k~~~~~~~~~~l~~~~~~pl~~  154 (165)
                      |+.+.+++.++||+|+++.+.+++|+.+.++|+|||+++++.+..  ..+.....+|.. +.++....++++|.+..+
T Consensus       139 D~~~~~~~~~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~~~~~l~~~~~~~~~~r~~-~~~~~~~~~~~~~l~~~G  215 (322)
T PRK13943        139 DGYYGVPEFAPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKD-PYLVGNYKLETRFIKAGG  215 (322)
T ss_pred             ChhhcccccCCccEEEECCchHHhHHHHHHhcCCCCEEEEEeCCccCCCCceEEEEecC-CCceEEEEEEeeEEcccc
Confidence            987766666789999999999999999999999999999988653  235666777764 469999999999988855

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.84  E-value=7.8e-21  Score=143.76  Aligned_cols=149  Identities=15%  Similarity=-0.003  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD   86 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~   86 (165)
                      ...+-.+..|. ..|+++++|| ||||.+|..++...  ++|||+|.++++++..+  ++++|.+|++++.||+.+.+++
T Consensus        21 EIRal~ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~   99 (187)
T COG2242          21 EIRALTLSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPD   99 (187)
T ss_pred             HHHHHHHHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcC
Confidence            44555666675 4899999999 99999999999544  79999999999999985  7889999999999999987776


Q ss_pred             CCCccEEEEcCCCC--CchHHHHhccccCcEEEEEecCC-CceEEEEEEEccCCcEEEEEeeeEEEeeeccCCCCCC--C
Q psy8015          87 NGPYDAIHVGAAYP--RYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVKAGYS--M  161 (165)
Q Consensus        87 ~~~fD~I~i~~~~~--~~p~~l~~~LkpgG~lvi~~~~~-~~~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~~~~~--~  161 (165)
                      ..+||+||++++..  .+.+.+++.||||||+|+...+- +...+....+..++. +...+.-.+-.++..+. .|+  |
T Consensus       100 ~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~-ei~~v~is~~~~lg~~~-~~~~~n  177 (187)
T COG2242         100 LPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR-EIVQVQISRGKPLGGGT-MFRPVN  177 (187)
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc-eEEEEEeecceeccCee-EeecCC
Confidence            56899999999843  46678999999999999998763 223333333433332 77777777888888886 777  8


Q ss_pred             CC
Q psy8015         162 PI  163 (165)
Q Consensus       162 ~~  163 (165)
                      ||
T Consensus       178 Pv  179 (187)
T COG2242         178 PV  179 (187)
T ss_pred             CE
Confidence            87

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.80  E-value=4.5e-19  Score=139.85  Aligned_cols=112  Identities=12%  Similarity=0.082  Sum_probs=93.5

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF   84 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~   84 (165)
                      +...+.+.+-.+..+.+|.+|||| ||||-+|..+++.+  ++|+++|+|+.|++.|+  ....+..+++|++|||.+..
T Consensus        35 ~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP  114 (238)
T COG2226          35 LHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP  114 (238)
T ss_pred             chHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC
Confidence            444454444444345689999999 99999999999998  79999999999999996  66667778999999998866


Q ss_pred             CCCCCccEEEEcCCCCCchH------HHHhccccCcEEEEEec
Q psy8015          85 GDNGPYDAIHVGAAYPRYPE------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        85 ~~~~~fD~I~i~~~~~~~p~------~l~~~LkpgG~lvi~~~  121 (165)
                      .++++||++.++.+.+++++      ++.|.|||||++++..-
T Consensus       115 f~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~  157 (238)
T COG2226         115 FPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEF  157 (238)
T ss_pred             CCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEc
Confidence            67899999999999887663      78999999999988654

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.75  E-value=2.1e-18  Score=136.08  Aligned_cols=106  Identities=15%  Similarity=0.128  Sum_probs=76.2

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCC
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDN   87 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~   87 (165)
                      ..++++.+. ..++.+|||+ ||||.++..+++..   ++|+++|+|++|++.|+  .+..+..||+++++|+.+...++
T Consensus        36 r~~~~~~~~-~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d  114 (233)
T PF01209_consen   36 RRKLIKLLG-LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD  114 (233)
T ss_dssp             -SHHHHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T
T ss_pred             HHHHHhccC-CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC
Confidence            344555553 4789999999 99999999999865   58999999999999996  55566779999999998754556


Q ss_pred             CCccEEEEcCCCCCchH------HHHhccccCcEEEEEe
Q psy8015          88 GPYDAIHVGAAYPRYPE------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        88 ~~fD~I~i~~~~~~~p~------~l~~~LkpgG~lvi~~  120 (165)
                      ++||+|++..+.+++++      ++.+.|||||++++..
T Consensus       115 ~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile  153 (233)
T PF01209_consen  115 NSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILE  153 (233)
T ss_dssp             T-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence            89999999998887764      6899999999999864

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.70  E-value=6.1e-17  Score=126.17  Aligned_cols=110  Identities=16%  Similarity=0.154  Sum_probs=94.8

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEE-ccCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLI-ADGR   81 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~-gD~~   81 (165)
                      +....++++.+|....+.+++||| |+.||+|.+||...   ++++++|+++++++.|+  +++.|.++ |+++. +|+.
T Consensus        43 ~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal  122 (219)
T COG4122          43 IDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL  122 (219)
T ss_pred             CChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH
Confidence            446778888888877889999999 99999999999876   58999999999999997  88889877 89999 5886


Q ss_pred             CCCCC--CCCccEEEEcCCCCCchH---HHHhccccCcEEEEE
Q psy8015          82 ASFGD--NGPYDAIHVGAAYPRYPE---IFIHHLKSGGRLVIP  119 (165)
Q Consensus        82 ~~~~~--~~~fD~I~i~~~~~~~p~---~l~~~LkpgG~lvi~  119 (165)
                      +.+..  .++||.||+++...++|+   .+.++|+|||.+|+-
T Consensus       123 ~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         123 DVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             HHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence            64442  589999999999998885   568999999999983

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.69  E-value=1.6e-16  Score=110.64  Aligned_cols=95  Identities=18%  Similarity=0.098  Sum_probs=76.1

Q ss_pred             CCCeEEEE-ccccHHHHHHhc--cCCcEEEEeCCHHHHHhcc--cccCC-CCCeEEEEccCCCCCCCCCCccEEEEcC-C
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPT--FIPNSFNINVYYYLSGGPL--SSTID-PDHDYDLIADGRASFGDNGPYDAIHVGA-A   98 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~--~~~~V~aiD~~~~~~~~A~--~~~~~-~~nV~~~~gD~~~~~~~~~~fD~I~i~~-~   98 (165)
                      |+.+|||+ ||+|.++..+++  ...+|+++|+|++|++.|+  .++.+ .+|++++++|+...+...++||+|++.+ .
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~   80 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT   80 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence            68999999 999999999999  5679999999999999997  32233 4689999999922334456799999999 4


Q ss_pred             CCCc---------hHHHHhccccCcEEEEEe
Q psy8015          99 YPRY---------PEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        99 ~~~~---------p~~l~~~LkpgG~lvi~~  120 (165)
                      .+.+         .+.+.+.|+|||++++..
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            4322         245789999999999853

...

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.67  E-value=4e-16  Score=118.76  Aligned_cols=150  Identities=14%  Similarity=0.055  Sum_probs=103.7

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF   84 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~   84 (165)
                      .+...+.+++++. ..++.+|||+ ||+|+++..+++..  .+|+++|+++++++.|+  .+..+..+++++.+|+...+
T Consensus        16 ~~~~r~~~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~   94 (187)
T PRK08287         16 KEEVRALALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIEL   94 (187)
T ss_pred             hHHHHHHHHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhc
Confidence            4444555667774 4788999999 99999999998865  58999999999999995  45566778999999975433


Q ss_pred             CCCCCccEEEEcCCCCCch---HHHHhccccCcEEEEEecC-CCceEEE-EEEEccCCcEEEEEeeeEEEeeeccCCCCC
Q psy8015          85 GDNGPYDAIHVGAAYPRYP---EIFIHHLKSGGRLVIPIGD-TKQQMLT-IYDKFHNGTIDIQHWGVVQVGLLYDVKAGY  159 (165)
Q Consensus        85 ~~~~~fD~I~i~~~~~~~p---~~l~~~LkpgG~lvi~~~~-~~~~~~~-~~~k~~~~~~~~~~l~~~~~~pl~~~~~~~  159 (165)
                        .++||+|++++....++   +.+.+.|+|||++++.... .+...+. .+.+.+-............+.++.++- .|
T Consensus        95 --~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~  171 (187)
T PRK08287         95 --PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCVQLQVSSLTPLGAGH-YF  171 (187)
T ss_pred             --CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEEEEEEEeeeEcCcce-ee
Confidence              35799999987655443   4678999999999886532 2222222 222322222344444455566666654 55


Q ss_pred             C--CCC
Q psy8015         160 S--MPI  163 (165)
Q Consensus       160 ~--~~~  163 (165)
                      .  |||
T Consensus       172 ~~~~~~  177 (187)
T PRK08287        172 KPNNPT  177 (187)
T ss_pred             ccCCCE
Confidence            5  675

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.67  E-value=1.1e-15  Score=122.37  Aligned_cols=108  Identities=16%  Similarity=0.047  Sum_probs=84.6

Q ss_pred             HHHHH-HHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcccc-----cCCCCCeEEEEccCCC
Q psy8015          13 AVAKY-VTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPLSS-----TIDPDHDYDLIADGRA   82 (165)
Q Consensus        13 ~~~~~-l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~-----~~~~~nV~~~~gD~~~   82 (165)
                      .+.++ ++++ ...++.+|||+ ||+|.++..+++..   ++|+++|+|++|++.|+.+     ....+|++++++|+.+
T Consensus        60 ~~r~~~~~~~-~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~  138 (261)
T PLN02233         60 IWKRMAVSWS-GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD  138 (261)
T ss_pred             HHHHHHHHHh-CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc
Confidence            34433 3444 44789999999 99999999998764   4899999999999999621     1234689999999876


Q ss_pred             CCCCCCCccEEEEcCCCCCch------HHHHhccccCcEEEEEec
Q psy8015          83 SFGDNGPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        83 ~~~~~~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~~  121 (165)
                      ...++++||+|++..+.++++      .++.+.|||||++++..-
T Consensus       139 lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~  183 (261)
T PLN02233        139 LPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDF  183 (261)
T ss_pred             CCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence            434457899999998888765      368899999999988754

>PLN02476 O-methyltransferase

Probab=99.66  E-value=2e-16  Score=127.42  Aligned_cols=111  Identities=14%  Similarity=0.094  Sum_probs=94.3

Q ss_pred             CchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCC
Q psy8015           9 SVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGR   81 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~   81 (165)
                      .++..+++++..|....+.++|||| |++||.|.++|...   ++|+++|.+++.++.|+  +++.|+. +|+++.||+.
T Consensus       101 ~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~  180 (278)
T PLN02476        101 QVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA  180 (278)
T ss_pred             ccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence            4567788888888887889999999 99999999999864   58999999999999996  7888886 6999999997


Q ss_pred             CCCCC------CCCccEEEEcCCCCCch---HHHHhccccCcEEEEE
Q psy8015          82 ASFGD------NGPYDAIHVGAAYPRYP---EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        82 ~~~~~------~~~fD~I~i~~~~~~~p---~~l~~~LkpgG~lvi~  119 (165)
                      +.++.      .++||.||+++....++   +.+.+.|+|||.+++.
T Consensus       181 e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        181 ESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             HHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence            64432      25899999999987666   4678999999998874

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.66  E-value=5e-16  Score=118.85  Aligned_cols=108  Identities=11%  Similarity=0.035  Sum_probs=85.1

Q ss_pred             CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      .++.+|||+ ||+|+.+..+++.  ..+|+++|.+++|++.|+  .+..+.+|++++++|+.+... .++||+|++++..
T Consensus        44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~~  122 (187)
T PRK00107         44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAVA  122 (187)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcccc
Confidence            458999999 9999999999864  368999999999999996  566778789999999876433 5789999997642


Q ss_pred             --CCchHHHHhccccCcEEEEEecCCCceEEEEEEE
Q psy8015         100 --PRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDK  133 (165)
Q Consensus       100 --~~~p~~l~~~LkpgG~lvi~~~~~~~~~~~~~~k  133 (165)
                        +.+.+.+.+.|||||++++..+....+.+....+
T Consensus       123 ~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~  158 (187)
T PRK00107        123 SLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPK  158 (187)
T ss_pred             CHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHH
Confidence              2444578899999999999987643334333333

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.66  E-value=2.8e-16  Score=124.08  Aligned_cols=110  Identities=15%  Similarity=0.128  Sum_probs=91.1

Q ss_pred             CchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCC
Q psy8015           9 SVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGR   81 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~   81 (165)
                      .++...++++..+....+.++|||+ ||+||.+.+++...   ++|+++|+++++++.|+  +++.|+. +++++.||+.
T Consensus        51 ~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~  130 (234)
T PLN02781         51 EVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL  130 (234)
T ss_pred             ccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence            3456778888888777789999999 99999999998764   69999999999999996  6777775 5999999997


Q ss_pred             CCCCC------CCCccEEEEcCCCCCch---HHHHhccccCcEEEE
Q psy8015          82 ASFGD------NGPYDAIHVGAAYPRYP---EIFIHHLKSGGRLVI  118 (165)
Q Consensus        82 ~~~~~------~~~fD~I~i~~~~~~~p---~~l~~~LkpgG~lvi  118 (165)
                      +.++.      .++||.||+++..+.++   +.+.+.|+|||.+++
T Consensus       131 ~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~  176 (234)
T PLN02781        131 SALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAF  176 (234)
T ss_pred             HHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence            64331      36899999998876554   567899999999886

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.65  E-value=6.2e-17  Score=125.48  Aligned_cols=111  Identities=15%  Similarity=0.139  Sum_probs=91.9

Q ss_pred             CchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCC
Q psy8015           9 SVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGR   81 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~   81 (165)
                      .++...++++..|....+.++|||| |++||.|.++|+..   ++|+++|.+++.++.|+  +++.|+. +|+++.||+.
T Consensus        28 ~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~  107 (205)
T PF01596_consen   28 SISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDAL  107 (205)
T ss_dssp             SHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HH
T ss_pred             ccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccH
Confidence            4677888999988766788999999 99999999999864   69999999999999997  7777875 6999999986


Q ss_pred             CCCCC------CCCccEEEEcCCCCCchH---HHHhccccCcEEEEE
Q psy8015          82 ASFGD------NGPYDAIHVGAAYPRYPE---IFIHHLKSGGRLVIP  119 (165)
Q Consensus        82 ~~~~~------~~~fD~I~i~~~~~~~p~---~l~~~LkpgG~lvi~  119 (165)
                      +.++.      .++||.||+++...++++   .+.+.|+|||.+++.
T Consensus       108 ~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  108 EVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             HHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEc
Confidence            53221      258999999999987764   567999999999985

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.65  E-value=8.7e-16  Score=115.55  Aligned_cols=118  Identities=18%  Similarity=0.132  Sum_probs=94.8

Q ss_pred             EEecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCc--EEEEeCCHHHHHhcc--cccCCCCCeEEEEc
Q psy8015           4 VFVSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPN--SFNINVYYYLSGGPL--SSTIDPDHDYDLIA   78 (165)
Q Consensus         4 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~--V~aiD~~~~~~~~A~--~~~~~~~nV~~~~g   78 (165)
                      |||.+++.....-|++.+.. .++.+|||+ ||+|.++..+++....  |+++|+++++++.|+  ++..+.++++++..
T Consensus        10 vFs~~~~d~~t~lL~~~l~~-~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~   88 (170)
T PF05175_consen   10 VFSPPRLDAGTRLLLDNLPK-HKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQS   88 (170)
T ss_dssp             STTTTSHHHHHHHHHHHHHH-HTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEES
T ss_pred             eeCCCCCCHHHHHHHHHHhh-ccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccc
Confidence            57667777778888888875 488999999 9999999999998754  999999999999996  66677777999999


Q ss_pred             cCCCCCCCCCCccEEEEcCCCCCc-----------hHHHHhccccCcEEEEEecCC
Q psy8015          79 DGRASFGDNGPYDAIHVGAAYPRY-----------PEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        79 D~~~~~~~~~~fD~I~i~~~~~~~-----------p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      |..+..+ ..+||.|+++...+.-           .+...+.|||||++++.....
T Consensus        89 d~~~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~  143 (170)
T PF05175_consen   89 DLFEALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH  143 (170)
T ss_dssp             STTTTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             ccccccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence            9987665 5799999998765421           234679999999998877654

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.64  E-value=3e-16  Score=120.62  Aligned_cols=145  Identities=11%  Similarity=0.014  Sum_probs=100.4

Q ss_pred             HHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCC-CCCeEEEEccCCCCCCC-CCC
Q psy8015          18 VTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTID-PDHDYDLIADGRASFGD-NGP   89 (165)
Q Consensus        18 l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~-~~nV~~~~gD~~~~~~~-~~~   89 (165)
                      +..+ ...++++|||+ ||+|+++..+++..   ++|+++|+++++++.|+  .+..+ .+|++++.+|+.+.++. .+.
T Consensus        33 l~~l-~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~  111 (198)
T PRK00377         33 LSKL-RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK  111 (198)
T ss_pred             HHHc-CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence            3444 34789999999 99999999988753   58999999999999995  55667 46899999998654333 368


Q ss_pred             ccEEEEcCCCCC---chHHHHhccccCcEEEEEecCCC-ceEEEEEEEccCCcEEEEEeeeEEEeeeccCCCCCC--CCC
Q psy8015          90 YDAIHVGAAYPR---YPEIFIHHLKSGGRLVIPIGDTK-QQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVKAGYS--MPI  163 (165)
Q Consensus        90 fD~I~i~~~~~~---~p~~l~~~LkpgG~lvi~~~~~~-~~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~~~~~--~~~  163 (165)
                      ||+|++++....   +.+.+.+.|+|||++++...+.. ...+....+..+-......+...+-.++.+.. .|.  |||
T Consensus       112 ~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~npv  190 (198)
T PRK00377        112 FDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNLEITEVIIAKGMKTKVGT-AMMTRNPI  190 (198)
T ss_pred             CCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCeEEEEEehhhcccccCCc-EeecCCCE
Confidence            999999765444   34567889999999998544322 23333333322223455555555555666554 666  887


Q ss_pred             C
Q psy8015         164 I  164 (165)
Q Consensus       164 ~  164 (165)
                      .
T Consensus       191 ~  191 (198)
T PRK00377        191 F  191 (198)
T ss_pred             E
Confidence            4

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.64  E-value=4.7e-16  Score=119.26  Aligned_cols=146  Identities=10%  Similarity=0.050  Sum_probs=100.1

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC-CCC
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD-NGP   89 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~-~~~   89 (165)
                      .++..+ ...++++|||+ ||+|+++..+++..  ++|+++|+|+++++.|+  +++.+.+|++++.+|+.+.++. ...
T Consensus        31 ~l~~~l-~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~  109 (196)
T PRK07402         31 LLISQL-RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA  109 (196)
T ss_pred             HHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence            456666 44789999999 99999999998764  68999999999999996  5667778899999998653322 235


Q ss_pred             ccEEEEcCCCC--CchHHHHhccccCcEEEEEecCCCc-eEE-EEEEEccCCcEEEEEeeeEEEeeeccCCCCCC--CCC
Q psy8015          90 YDAIHVGAAYP--RYPEIFIHHLKSGGRLVIPIGDTKQ-QML-TIYDKFHNGTIDIQHWGVVQVGLLYDVKAGYS--MPI  163 (165)
Q Consensus        90 fD~I~i~~~~~--~~p~~l~~~LkpgG~lvi~~~~~~~-~~~-~~~~k~~~~~~~~~~l~~~~~~pl~~~~~~~~--~~~  163 (165)
                      +|.+++++...  .+.+.+.+.|+|||++++....... ..+ ..+.+.....++..........++.+.+ +|+  |||
T Consensus       110 ~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pv  188 (196)
T PRK07402        110 PDRVCIEGGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQAAVNRLETRGFSQ-VFAAVDPI  188 (196)
T ss_pred             CCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEEEhhhcccccCcC-eeecCCCE
Confidence            78888875432  4456788999999999998754321 111 1111211223555444444444566554 776  887

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.63  E-value=2.8e-15  Score=114.14  Aligned_cols=97  Identities=10%  Similarity=0.027  Sum_probs=80.3

Q ss_pred             CCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP  100 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~  100 (165)
                      ++++|||+ ||+|+++..++...  .+|+++|.+++|++.++  .++.+.+|++++++|+.+. ...++||+|++++ .+
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~-~~~~~fD~I~s~~-~~  119 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF-QHEEQFDVITSRA-LA  119 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc-cccCCccEEEehh-hh
Confidence            58999999 99999999998765  57999999999999886  5666788899999998763 4457899999976 55


Q ss_pred             Cch---HHHHhccccCcEEEEEecCCC
Q psy8015         101 RYP---EIFIHHLKSGGRLVIPIGDTK  124 (165)
Q Consensus       101 ~~p---~~l~~~LkpgG~lvi~~~~~~  124 (165)
                      +++   +.+.+.|+|||++++..+...
T Consensus       120 ~~~~~~~~~~~~LkpgG~lvi~~~~~~  146 (181)
T TIGR00138       120 SLNVLLELTLNLLKVGGYFLAYKGKKY  146 (181)
T ss_pred             CHHHHHHHHHHhcCCCCEEEEEcCCCc
Confidence            444   467889999999999887544

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.62  E-value=5.5e-15  Score=115.55  Aligned_cols=109  Identities=10%  Similarity=0.072  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG   85 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~   85 (165)
                      .....++..+. .+++++|||+ ||+|..+..+++..   ++|+++|+++++++.|+  .+..+.++++++.+|+.....
T Consensus        32 ~~~~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~  110 (231)
T TIGR02752        32 KWRKDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF  110 (231)
T ss_pred             HHHHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC
Confidence            33456677764 4789999999 99999999998764   58999999999999996  455567789999999876433


Q ss_pred             CCCCccEEEEcCCCCCch------HHHHhccccCcEEEEEec
Q psy8015          86 DNGPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        86 ~~~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~~  121 (165)
                      +.++||+|+++...++.+      +++.+.|+|||++++...
T Consensus       111 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       111 DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             CCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence            457899999987776654      357899999999998654

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.61  E-value=1.1e-15  Score=121.56  Aligned_cols=110  Identities=12%  Similarity=0.068  Sum_probs=92.7

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRA   82 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~   82 (165)
                      ++...++++..|....+.++|||| |++||.|.++|+..   ++|+++|.+++.++.|+  +++.|+ ++|+++.||+.+
T Consensus        63 ~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e  142 (247)
T PLN02589         63 TSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP  142 (247)
T ss_pred             cCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH
Confidence            456778888888776788999999 99999999999864   68999999999999997  777886 469999999876


Q ss_pred             CCCC-------CCCccEEEEcCCCCCchH---HHHhccccCcEEEEE
Q psy8015          83 SFGD-------NGPYDAIHVGAAYPRYPE---IFIHHLKSGGRLVIP  119 (165)
Q Consensus        83 ~~~~-------~~~fD~I~i~~~~~~~p~---~l~~~LkpgG~lvi~  119 (165)
                      .++.       .++||.||+++....+++   .+.+.|+|||.+++.
T Consensus       143 ~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        143 VLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             HHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence            4432       268999999999887774   568999999998873

>PLN02244 tocopherol O-methyltransferase

Probab=99.61  E-value=5.7e-15  Score=122.43  Aligned_cols=107  Identities=13%  Similarity=0.108  Sum_probs=85.4

Q ss_pred             HHHHHHHHHhcC-----CCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCC
Q psy8015          13 AVAKYVTYLSGH-----SKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRA   82 (165)
Q Consensus        13 ~~~~~l~~l~~~-----~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~   82 (165)
                      ...++++++. +     .++++|||| ||+|.++..+++. ..+|+++|+++.|++.|+  .+..+. ++++++++|+.+
T Consensus       101 ~~~~~l~~~~-~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~  179 (340)
T PLN02244        101 MIEESLAWAG-VPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN  179 (340)
T ss_pred             HHHHHHHhcC-CCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence            3445555552 2     568999999 9999999999986 469999999999999986  344455 479999999876


Q ss_pred             CCCCCCCccEEEEcCCCCCchH------HHHhccccCcEEEEEe
Q psy8015          83 SFGDNGPYDAIHVGAAYPRYPE------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        83 ~~~~~~~fD~I~i~~~~~~~p~------~l~~~LkpgG~lvi~~  120 (165)
                      ...++++||+|++..+.+++++      ++.+.|||||++++..
T Consensus       180 ~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        180 QPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             CCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            4334579999999888877663      6789999999999864

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=4.9e-16  Score=122.51  Aligned_cols=134  Identities=16%  Similarity=0.078  Sum_probs=101.9

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCCC
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFGD   86 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~~   86 (165)
                      .+.++..+ .+.||++|+|. +|||.+|+.||+.+   ++|+++|+.++.++.|+  ++.+++.| |++..+|..+...+
T Consensus        83 ~~~I~~~~-gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~  161 (256)
T COG2519          83 AGYIVARL-GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE  161 (256)
T ss_pred             HHHHHHHc-CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence            34455555 56999999999 99999999999864   69999999999999995  77788877 99999999886655


Q ss_pred             CCCccEEEEcCCCC-CchHHHHhccccCcEEEEEecCCCceEEEEEEEccCCcEEEEEeeeEEEe
Q psy8015          87 NGPYDAIHVGAAYP-RYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVG  150 (165)
Q Consensus        87 ~~~fD~I~i~~~~~-~~p~~l~~~LkpgG~lvi~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~  150 (165)
                      + .||+||++-..| ++.+.+.+.|+|||.+++.++..+ |.-..+.+..+..|...+.+|+...
T Consensus       162 ~-~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~ve-Qv~kt~~~l~~~g~~~ie~~E~l~R  224 (256)
T COG2519         162 E-DVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVE-QVEKTVEALRERGFVDIEAVETLVR  224 (256)
T ss_pred             c-ccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHH-HHHHHHHHHHhcCccchhhheeeeh
Confidence            4 899999986654 677889999999999999987654 2222222211223555555555443

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.61  E-value=1.1e-14  Score=102.47  Aligned_cols=108  Identities=11%  Similarity=0.042  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC-
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG-   85 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~-   85 (165)
                      ...+.+++.+. ..++++|||+ ||+|+++..+++..  .+|+++|+++.+++.|+  .+..+.++++++.+|+...++ 
T Consensus         6 ~~~~~~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   84 (124)
T TIGR02469         6 EVRALTLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED   84 (124)
T ss_pred             HHHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh
Confidence            34556777764 4678899999 99999999999875  58999999999999996  556677789999999764332 


Q ss_pred             CCCCccEEEEcCCCCC---chHHHHhccccCcEEEEEe
Q psy8015          86 DNGPYDAIHVGAAYPR---YPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        86 ~~~~fD~I~i~~~~~~---~p~~l~~~LkpgG~lvi~~  120 (165)
                      ...+||.|++......   +.+.+.+.|||||++++..
T Consensus        85 ~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        85 SLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             hcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence            2358999999876654   4567899999999999865

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.60  E-value=4.3e-15  Score=127.06  Aligned_cols=139  Identities=10%  Similarity=0.031  Sum_probs=107.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC----
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG----   85 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~----   85 (165)
                      ....+++++. ..++.+|||+ ||+|.++..+|+.+.+|+++|+|++|++.|+  ++..+.+|++++.+|+.+.+.    
T Consensus       285 l~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~  363 (443)
T PRK13168        285 MVARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPW  363 (443)
T ss_pred             HHHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhh
Confidence            3445556653 3678999999 9999999999998899999999999999996  555677899999999865432    


Q ss_pred             CCCCccEEEEcCCCCCchH--HHHhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEeeeccC
Q psy8015          86 DNGPYDAIHVGAAYPRYPE--IFIHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGLLYDV  155 (165)
Q Consensus        86 ~~~~fD~I~i~~~~~~~p~--~l~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~  155 (165)
                      ..++||+|+++......++  +....++|++.+++.|++.+. ..+..+.+   ++|....+..+++.|.+.+
T Consensus       364 ~~~~fD~Vi~dPPr~g~~~~~~~l~~~~~~~ivyvSCnp~tlaRDl~~L~~---~gY~l~~i~~~DmFP~T~H  433 (443)
T PRK13168        364 ALGGFDKVLLDPPRAGAAEVMQALAKLGPKRIVYVSCNPATLARDAGVLVE---AGYRLKRAGMLDMFPHTGH  433 (443)
T ss_pred             hcCCCCEEEECcCCcChHHHHHHHHhcCCCeEEEEEeChHHhhccHHHHhh---CCcEEEEEEEeccCCCCCc
Confidence            1357999999877654443  234557999999999987664 44444433   3599999999999998864

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.59  E-value=5.8e-15  Score=117.50  Aligned_cols=105  Identities=10%  Similarity=0.045  Sum_probs=85.9

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD   86 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~   86 (165)
                      +.+....+++.+. ..++.+|||+ ||+|.++..+++.  ..+|+++|+|+.|++.|+.+     +++++.+|+.+. +.
T Consensus        14 ~~~~~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~-~~   86 (255)
T PRK14103         14 RGRPFYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----GVDARTGDVRDW-KP   86 (255)
T ss_pred             hhCHHHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----CCcEEEcChhhC-CC
Confidence            3445567777774 3688999999 9999999999987  46899999999999998632     588999998653 44


Q ss_pred             CCCccEEEEcCCCCCchH------HHHhccccCcEEEEEec
Q psy8015          87 NGPYDAIHVGAAYPRYPE------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        87 ~~~fD~I~i~~~~~~~p~------~l~~~LkpgG~lvi~~~  121 (165)
                      .++||+|+++...+++++      ++.+.|||||++++.+.
T Consensus        87 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~  127 (255)
T PRK14103         87 KPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVP  127 (255)
T ss_pred             CCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence            578999999999887764      57899999999998754

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.59  E-value=5.4e-15  Score=108.88  Aligned_cols=97  Identities=15%  Similarity=0.181  Sum_probs=80.9

Q ss_pred             CCCCeEEEE-ccccHHHHHHhc-c--CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCC--CCccEEEEc
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPT-F--IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDN--GPYDAIHVG   96 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~-~--~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~--~~fD~I~i~   96 (165)
                      +++.+|||+ ||+|.++..+++ +  ..+++++|+|++|++.|+  +++.+.+|++++++|..+ ++..  ..||+|++.
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~   80 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN   80 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence            468999999 999999999994 4  368999999999999997  567888899999999987 5422  789999999


Q ss_pred             CCCCCch------HHHHhccccCcEEEEEecC
Q psy8015          97 AAYPRYP------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        97 ~~~~~~p------~~l~~~LkpgG~lvi~~~~  122 (165)
                      ...++++      +.+.+.|++||++++....
T Consensus        81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            8876554      3578999999999986643

...

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.58  E-value=2e-14  Score=110.59  Aligned_cols=104  Identities=15%  Similarity=0.008  Sum_probs=82.8

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCc
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPY   90 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~f   90 (165)
                      ...+++.+.. .++.+|||+ ||+|..+..|++...+|+++|+|++|++.|+  .+..+..|+++..+|..+. +..++|
T Consensus        19 ~~~l~~~l~~-~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~f   96 (197)
T PRK11207         19 HSEVLEAVKV-VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL-TFDGEY   96 (197)
T ss_pred             hHHHHHhccc-CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC-CcCCCc
Confidence            3456666643 577999999 9999999999998889999999999999996  4555677899999998653 223579


Q ss_pred             cEEEEcCCCCCch--------HHHHhccccCcEEEEE
Q psy8015          91 DAIHVGAAYPRYP--------EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        91 D~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~  119 (165)
                      |+|++....++++        ..+.+.|+|||++++.
T Consensus        97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207         97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            9999988776543        2578999999996553

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.58  E-value=2e-15  Score=119.91  Aligned_cols=142  Identities=13%  Similarity=-0.018  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCC-C
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRA-S   83 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~-~   83 (165)
                      --.+.++.++ .+.||++|+|. ||||.+|..|++.+   |+|++.|++++.++.|+  ++.+|+. ||++.+.|..+ +
T Consensus        27 kD~~~I~~~l-~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g  105 (247)
T PF08704_consen   27 KDISYILMRL-DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG  105 (247)
T ss_dssp             HHHHHHHHHT-T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-
T ss_pred             chHHHHHHHc-CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc
Confidence            3456677777 46999999999 99999999999875   69999999999999996  7888885 79999999854 5


Q ss_pred             CCC--CCCccEEEEcCCCC-CchHHHHhcc-ccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEeeeccCC
Q psy8015          84 FGD--NGPYDAIHVGAAYP-RYPEIFIHHL-KSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGLLYDVK  156 (165)
Q Consensus        84 ~~~--~~~fD~I~i~~~~~-~~p~~l~~~L-kpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~  156 (165)
                      +.+  ...||+||++-..| +..+.+.+.| ||||++++..+..+. +......+.  .+|...+..|+....+.-.+
T Consensus       106 ~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~--~gf~~i~~~Evl~R~~~v~~  181 (247)
T PF08704_consen  106 FDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALRE--HGFTDIETVEVLLREWEVRP  181 (247)
T ss_dssp             -STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHH--TTEEEEEEEEEEEEEEEEET
T ss_pred             ccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHH--CCCeeeEEEEEEeeEEEEEe
Confidence            532  36799999997765 4667788999 999999998876542 333222232  24777777777666555443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.56  E-value=1.4e-14  Score=115.38  Aligned_cols=106  Identities=12%  Similarity=0.087  Sum_probs=84.1

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCC-CCCCC
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASF-GDNGP   89 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~-~~~~~   89 (165)
                      ..+++.+.  .++.+|||+ ||+|+++..+++...+|+++|++++|++.|+  .+..+. +|++++++|+.+.. ...++
T Consensus        35 ~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~  112 (255)
T PRK11036         35 DRLLAELP--PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETP  112 (255)
T ss_pred             HHHHHhcC--CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCC
Confidence            34555553  457899999 9999999999999889999999999999996  455565 47999999986532 12468


Q ss_pred             ccEEEEcCCCCCch------HHHHhccccCcEEEEEecC
Q psy8015          90 YDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        90 fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~~~  122 (165)
                      ||+|++....++++      +.+.+.|||||++++....
T Consensus       113 fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n  151 (255)
T PRK11036        113 VDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYN  151 (255)
T ss_pred             CCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence            99999998876553      3678999999999886543

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.56  E-value=3.1e-14  Score=114.14  Aligned_cols=114  Identities=13%  Similarity=0.049  Sum_probs=86.2

Q ss_pred             ecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC
Q psy8015           6 VSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS   83 (165)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~   83 (165)
                      ++++... ...++..+. +.++.+|||| ||+|..+..+++.. .+|+++|++++|++.|+.+....++++++.+|+...
T Consensus        34 ~~gg~~~-~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~  111 (263)
T PTZ00098         34 SSGGIEA-TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKK  111 (263)
T ss_pred             CCCchHH-HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccC
Confidence            3444444 567777774 5789999999 99999999888654 599999999999999973222245799999998753


Q ss_pred             CCCCCCccEEEEcCCCCCch--------HHHHhccccCcEEEEEec
Q psy8015          84 FGDNGPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        84 ~~~~~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~~  121 (165)
                      ..+.++||+|++.....+++        .++.+.|||||++++...
T Consensus       112 ~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~  157 (263)
T PTZ00098        112 DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY  157 (263)
T ss_pred             CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            33357899999976554443        357899999999998643

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.56  E-value=1.3e-14  Score=97.13  Aligned_cols=87  Identities=15%  Similarity=0.122  Sum_probs=70.1

Q ss_pred             EEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCCch-----
Q psy8015          31 LAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYP-----  103 (165)
Q Consensus        31 Lei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p-----  103 (165)
                      ||+ ||+|..+..+++. ..+|+++|.++++++.++... ...++.++.+|..+...++++||+|++....++++     
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~-~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~   79 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRL-KNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAA   79 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHT-TTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHH
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcc-cccCchheeehHHhCccccccccccccccceeeccCHHHH
Confidence            899 9999999999999 789999999999999997322 23457799999877554578999999999888764     


Q ss_pred             -HHHHhccccCcEEEE
Q psy8015         104 -EIFIHHLKSGGRLVI  118 (165)
Q Consensus       104 -~~l~~~LkpgG~lvi  118 (165)
                       +++.+.|||||++++
T Consensus        80 l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   80 LREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHcCcCeEEeC
Confidence             368999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.55  E-value=4.2e-14  Score=116.08  Aligned_cols=134  Identities=7%  Similarity=-0.119  Sum_probs=103.3

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC-CCCCcc
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG-DNGPYD   91 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~-~~~~fD   91 (165)
                      ...+++.. .++.+|||+ ||+|.++..+|+...+|+++|+++++++.|+  .+..+++|++++.+|+.+... ..+.||
T Consensus       164 ~v~~~l~~-~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D  242 (315)
T PRK03522        164 TARDWVRE-LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPD  242 (315)
T ss_pred             HHHHHHHh-cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCe
Confidence            33445532 357999999 9999999999998889999999999999996  566678889999999865322 235799


Q ss_pred             EEEEcCCCCCchH---HHHhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEeeeccC
Q psy8015          92 AIHVGAAYPRYPE---IFIHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGLLYDV  155 (165)
Q Consensus        92 ~I~i~~~~~~~p~---~l~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~  155 (165)
                      +|+++....-+.+   .+...++|++.+++.|++.+. ..+..+     ++|....+..+++.|++.+
T Consensus       243 ~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-----~~y~~~~~~~~DmFP~T~H  305 (315)
T PRK03522        243 LVLVNPPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-----PGYRIERVQLFDMFPHTAH  305 (315)
T ss_pred             EEEECCCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-----cCcEEEEEEEeccCCCCCe
Confidence            9999966544433   345567888999999988764 344433     2599999999999998864

>PRK04266 fibrillarin; Provisional

Probab=99.55  E-value=5.2e-14  Score=110.67  Aligned_cols=111  Identities=18%  Similarity=0.120  Sum_probs=81.2

Q ss_pred             chHHHHHHHHHH--hcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC
Q psy8015          10 VSGAVAKYVTYL--SGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF   84 (165)
Q Consensus        10 ~~~~~~~~l~~l--~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~   84 (165)
                      .+...+.++..+  ..+.++++|||+ ||+|+++..+++.+  ++|+++|++++|++.++.+.....||.++.+|+.+..
T Consensus        54 r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~  133 (226)
T PRK04266         54 RSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPE  133 (226)
T ss_pred             ccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcc
Confidence            344455555522  245799999999 99999999999986  5899999999999866411112368999999986421


Q ss_pred             ---CCCCCccEEEEcCCCCCc----hHHHHhccccCcEEEEEe
Q psy8015          85 ---GDNGPYDAIHVGAAYPRY----PEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        85 ---~~~~~fD~I~i~~~~~~~----p~~l~~~LkpgG~lvi~~  120 (165)
                         +-..+||+|+++...++.    .+.+.+.|||||++++.+
T Consensus       134 ~~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v  176 (226)
T PRK04266        134 RYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAI  176 (226)
T ss_pred             hhhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEEE
Confidence               112569999987654432    356788999999999953

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.54  E-value=1.9e-14  Score=110.05  Aligned_cols=98  Identities=14%  Similarity=0.098  Sum_probs=76.3

Q ss_pred             cCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015          23 GHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR  101 (165)
Q Consensus        23 ~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~  101 (165)
                      +..+-.++||+ ||.|.+|..||..+.+++++|+++..++.||.+..+.+||+++++|..+.+| .++||.|++......
T Consensus        40 p~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P-~~~FDLIV~SEVlYY  118 (201)
T PF05401_consen   40 PRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWP-EGRFDLIVLSEVLYY  118 (201)
T ss_dssp             TTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGG
T ss_pred             CccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCC-CCCeeEEEEehHhHc
Confidence            33667899999 9999999999999999999999999999998555577899999999987665 479999999977665


Q ss_pred             ch---------HHHHhccccCcEEEEEec
Q psy8015         102 YP---------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       102 ~p---------~~l~~~LkpgG~lvi~~~  121 (165)
                      +.         +.+.+.|+|||.||+-..
T Consensus       119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  119 LDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             SSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            42         246789999999999753

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.53  E-value=2.7e-14  Score=117.54  Aligned_cols=97  Identities=8%  Similarity=-0.036  Sum_probs=79.5

Q ss_pred             CCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhccc--ccCC-CCCeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLS--STID-PDHDYDLIADGRASFGDNGPYDAIHVGAAYPR  101 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~--~~~~-~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~  101 (165)
                      ++.+|||| ||+|+++..|++...+|+++|.+++|++.|+.  +..+ ..+++++++|+.+.....++||+|++....++
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH  210 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH  210 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence            57799999 99999999999888899999999999999972  2222 24799999998653334578999999988887


Q ss_pred             chH------HHHhccccCcEEEEEecC
Q psy8015         102 YPE------IFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus       102 ~p~------~l~~~LkpgG~lvi~~~~  122 (165)
                      +++      ++.+.|||||++++....
T Consensus       211 v~d~~~~L~~l~r~LkPGG~liist~n  237 (322)
T PLN02396        211 VANPAEFCKSLSALTIPNGATVLSTIN  237 (322)
T ss_pred             cCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            653      678999999999987643

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.52  E-value=9.9e-14  Score=114.45  Aligned_cols=118  Identities=16%  Similarity=0.113  Sum_probs=89.4

Q ss_pred             ecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCC
Q psy8015           6 VSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRA   82 (165)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~   82 (165)
                      +.++.....++.+-.+...+++++|||+ ||||.++..++....+|+++|+|++|++.|+  ++..|.+++++..+|+.+
T Consensus       162 ~~~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~  241 (329)
T TIGR01177       162 KPGSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATK  241 (329)
T ss_pred             CCCCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhc
Confidence            3444444444443333345789999999 9999999988888889999999999999886  677788889999999876


Q ss_pred             CCCCCCCccEEEEcCCCC---------------CchHHHHhccccCcEEEEEecCC
Q psy8015          83 SFGDNGPYDAIHVGAAYP---------------RYPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        83 ~~~~~~~fD~I~i~~~~~---------------~~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      .....+.||+|+++..+.               .+.+.+.+.|||||++++...+.
T Consensus       242 l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~  297 (329)
T TIGR01177       242 LPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR  297 (329)
T ss_pred             CCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence            433357899999985431               11235678999999999988654

This family is found exclusively in the Archaea.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.51  E-value=1.3e-13  Score=109.67  Aligned_cols=104  Identities=13%  Similarity=0.068  Sum_probs=83.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCC
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGP   89 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~   89 (165)
                      ....++..+. ..++.+|||| ||+|.++..+++..  .+|+++|++++|++.|+.+   .+|++++.+|+... ....+
T Consensus        19 ~~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~---~~~~~~~~~d~~~~-~~~~~   93 (258)
T PRK01683         19 PARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSR---LPDCQFVEADIASW-QPPQA   93 (258)
T ss_pred             HHHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh---CCCCeEEECchhcc-CCCCC
Confidence            4556666664 3678999999 99999999999864  6899999999999999632   35789999998653 33468


Q ss_pred             ccEEEEcCCCCCchH------HHHhccccCcEEEEEec
Q psy8015          90 YDAIHVGAAYPRYPE------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        90 fD~I~i~~~~~~~p~------~l~~~LkpgG~lvi~~~  121 (165)
                      ||+|+++...+++++      .+.+.|||||++++.+.
T Consensus        94 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~  131 (258)
T PRK01683         94 LDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP  131 (258)
T ss_pred             ccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence            999999998876653      57899999999998653

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.51  E-value=1.2e-13  Score=110.88  Aligned_cols=105  Identities=14%  Similarity=0.039  Sum_probs=81.8

Q ss_pred             HHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCc
Q psy8015          17 YVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPY   90 (165)
Q Consensus        17 ~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~f   90 (165)
                      +...+...+++++|||+ ||+|..|..++...   ++|+++|+++++++.++  +++.|..||+++++|+.......+.|
T Consensus        62 ~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~f  141 (264)
T TIGR00446        62 IPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKF  141 (264)
T ss_pred             HHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCC
Confidence            33333345789999999 99999999998875   58999999999999985  77788889999999986533334579


Q ss_pred             cEEEEcCCCCC----------------------------chHHHHhccccCcEEEEEec
Q psy8015          91 DAIHVGAAYPR----------------------------YPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        91 D~I~i~~~~~~----------------------------~p~~l~~~LkpgG~lvi~~~  121 (165)
                      |+|+++..+..                            +.+...+.|||||+|+....
T Consensus       142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc  200 (264)
T TIGR00446       142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC  200 (264)
T ss_pred             CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            99999865431                            11245688999999998754

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.51  E-value=1.7e-14  Score=113.02  Aligned_cols=95  Identities=14%  Similarity=0.037  Sum_probs=79.8

Q ss_pred             CCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhccc--ccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCCc
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLS--STIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRY  102 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~--~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~  102 (165)
                      ++.+|||| ||-|.++..||+...+|+++|.++++++.|+.  .+-++ ++++......+.....++||+|++.-..+|+
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv-~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv  137 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGV-NIDYRQATVEDLASAGGQFDVVTCMEVLEHV  137 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccc-cccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence            78999999 99999999999999999999999999999983  22233 4678777776544444799999999999988


Q ss_pred             hH------HHHhccccCcEEEEEec
Q psy8015         103 PE------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       103 p~------~l~~~LkpgG~lvi~~~  121 (165)
                      |+      .|.+++||||.+++...
T Consensus       138 ~dp~~~~~~c~~lvkP~G~lf~STi  162 (243)
T COG2227         138 PDPESFLRACAKLVKPGGILFLSTI  162 (243)
T ss_pred             CCHHHHHHHHHHHcCCCcEEEEecc
Confidence            75      48899999999999743

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.50  E-value=1.7e-13  Score=108.53  Aligned_cols=104  Identities=11%  Similarity=-0.016  Sum_probs=81.0

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDA   92 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~   92 (165)
                      ..++++.+.. .++.+|||+ ||+|.++..+++...+|+++|+|++|++.|+.+.   .+..++.+|+.......++||+
T Consensus        31 a~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~---~~~~~~~~d~~~~~~~~~~fD~  106 (251)
T PRK10258         31 ADALLAMLPQ-RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKD---AADHYLAGDIESLPLATATFDL  106 (251)
T ss_pred             HHHHHHhcCc-cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhC---CCCCEEEcCcccCcCCCCcEEE
Confidence            3455666643 467899999 9999999999888889999999999999996331   2357889998664334568999


Q ss_pred             EEEcCCCCCch------HHHHhccccCcEEEEEec
Q psy8015          93 IHVGAAYPRYP------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        93 I~i~~~~~~~p------~~l~~~LkpgG~lvi~~~  121 (165)
                      |+++...+..+      .++.+.|+|||++++...
T Consensus       107 V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~  141 (251)
T PRK10258        107 AWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTL  141 (251)
T ss_pred             EEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            99987765443      467899999999998753

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.50  E-value=2.2e-13  Score=104.64  Aligned_cols=104  Identities=14%  Similarity=-0.022  Sum_probs=78.9

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCc
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPY   90 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~f   90 (165)
                      ...+++.+.. .++.+|||+ ||+|+.+..+++...+|+++|+|+.|++.++  .+..++ ++++..+|... ++..++|
T Consensus        19 ~~~l~~~~~~-~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~-~~~~~~f   95 (195)
T TIGR00477        19 HSAVREAVKT-VAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL-PLRTDAYDINA-AALNEDY   95 (195)
T ss_pred             hHHHHHHhcc-CCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchh-ccccCCC
Confidence            3455566643 467899999 9999999999998889999999999999985  333455 47788888653 2223579


Q ss_pred             cEEEEcCCCCCch--------HHHHhccccCcEEEEEe
Q psy8015          91 DAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        91 D~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~  120 (165)
                      |+|++....++++        +.+.+.|+|||++++..
T Consensus        96 D~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~  133 (195)
T TIGR00477        96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA  133 (195)
T ss_pred             CEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence            9999987776543        35788999999966653

Part of a tellurite-reducing operon tehA and tehB

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.50  E-value=2.7e-13  Score=102.46  Aligned_cols=96  Identities=15%  Similarity=0.091  Sum_probs=76.1

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR  101 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~  101 (165)
                      .++++|||+ ||+|+++..+++...+|+++|+++++++.|+  ++..+. +++++.+|..+..  .++||.|+++.....
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~   94 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV--RGKFDVILFNPPYLP   94 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc--CCcccEEEECCCCCC
Confidence            567899999 9999999999988779999999999999996  444444 6899999986643  358999999865431


Q ss_pred             c---------------------------hHHHHhccccCcEEEEEecCC
Q psy8015         102 Y---------------------------PEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus       102 ~---------------------------p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      .                           .+.+.+.|+|||++++.....
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~  143 (179)
T TIGR00537        95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL  143 (179)
T ss_pred             CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence            1                           234568999999999976543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.49  E-value=4.1e-13  Score=107.96  Aligned_cols=95  Identities=16%  Similarity=0.083  Sum_probs=76.3

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCC-----cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIP-----NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAA   98 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~-----~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~   98 (165)
                      .+..+|||+ ||+|+++..+++...     +|+++|+|++|++.|+.+   ..|+++.++|+.+...++++||+|+...+
T Consensus        84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~---~~~~~~~~~d~~~lp~~~~sfD~I~~~~~  160 (272)
T PRK11088         84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR---YPQVTFCVASSHRLPFADQSLDAIIRIYA  160 (272)
T ss_pred             CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh---CCCCeEEEeecccCCCcCCceeEEEEecC
Confidence            456889999 999999999987542     689999999999998632   35789999998764334578999998665


Q ss_pred             CCCchHHHHhccccCcEEEEEecCC
Q psy8015          99 YPRYPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        99 ~~~~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                       +...+++.+.|||||++++.....
T Consensus       161 -~~~~~e~~rvLkpgG~li~~~p~~  184 (272)
T PRK11088        161 -PCKAEELARVVKPGGIVITVTPGP  184 (272)
T ss_pred             -CCCHHHHHhhccCCCEEEEEeCCC
Confidence             445678999999999999986543

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.49  E-value=3.7e-14  Score=120.81  Aligned_cols=137  Identities=9%  Similarity=-0.089  Sum_probs=103.1

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC----CC
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG----DN   87 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~----~~   87 (165)
                      .++.+++. ..++++|||+ ||+|.++..+|+.+.+|+++|+++++++.|+  ++..+++|++++.+|+.+.++    ..
T Consensus       282 ~~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~  360 (431)
T TIGR00479       282 DRALEALE-LQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAG  360 (431)
T ss_pred             HHHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcC
Confidence            34455553 3677999999 9999999999999899999999999999996  556678899999999865322    13


Q ss_pred             CCccEEEEcCCCCCchHH---HHhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEeeeccC
Q psy8015          88 GPYDAIHVGAAYPRYPEI---FIHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGLLYDV  155 (165)
Q Consensus        88 ~~fD~I~i~~~~~~~p~~---l~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~  155 (165)
                      ..||+|+++.....+...   ....++|++.+++.+++.+. ..+..+.+   .+|..+.+..+++.|.+.+
T Consensus       361 ~~~D~vi~dPPr~G~~~~~l~~l~~l~~~~ivyvsc~p~tlard~~~l~~---~gy~~~~~~~~DmFP~T~H  429 (431)
T TIGR00479       361 QIPDVLLLDPPRKGCAAEVLRTIIELKPERIVYVSCNPATLARDLEFLCK---EGYGITWVQPVDMFPHTAH  429 (431)
T ss_pred             CCCCEEEECcCCCCCCHHHHHHHHhcCCCEEEEEcCCHHHHHHHHHHHHH---CCeeEEEEEEeccCCCCCC
Confidence            479999998765432221   23458999988898876543 33333433   3499999999999998764

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.49  E-value=1.8e-13  Score=109.72  Aligned_cols=96  Identities=13%  Similarity=0.043  Sum_probs=78.5

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcC
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGA   97 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~   97 (165)
                      +.++++|||+ ||+|..+..+++..   ++|+++|++++|++.|+  .+..+.+|++++.+|..+...+.+.||+|+.+.
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~  154 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC  154 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence            4689999999 99999888777754   47999999999999996  455677899999999865333346899999987


Q ss_pred             CCCCch------HHHHhccccCcEEEEE
Q psy8015          98 AYPRYP------EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        98 ~~~~~p------~~l~~~LkpgG~lvi~  119 (165)
                      ..+..+      +++.+.|||||++++.
T Consensus       155 v~~~~~d~~~~l~~~~r~LkpGG~l~i~  182 (272)
T PRK11873        155 VINLSPDKERVFKEAFRVLKPGGRFAIS  182 (272)
T ss_pred             cccCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence            765544      4678999999999985

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.48  E-value=2.1e-13  Score=116.38  Aligned_cols=106  Identities=20%  Similarity=0.150  Sum_probs=82.2

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC----
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF----   84 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~----   84 (165)
                      +.++..+....++++|||+ ||+|..|..+++..   ++|+++|+++++++.++  ++++|.+||+++.+|+....    
T Consensus       241 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~  320 (434)
T PRK14901        241 AQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKP  320 (434)
T ss_pred             HHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccc
Confidence            3334333345789999999 99999999999875   58999999999999995  77889989999999987543    


Q ss_pred             CCCCCccEEEEcCCCC------Cc----------------------hHHHHhccccCcEEEEEe
Q psy8015          85 GDNGPYDAIHVGAAYP------RY----------------------PEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        85 ~~~~~fD~I~i~~~~~------~~----------------------p~~l~~~LkpgG~lvi~~  120 (165)
                      ...+.||+|++++.+.      +-                      .+...+.|||||+||...
T Consensus       321 ~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst  384 (434)
T PRK14901        321 QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT  384 (434)
T ss_pred             cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            1236899999986432      11                      124578999999998764

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.47  E-value=4.3e-13  Score=112.49  Aligned_cols=117  Identities=14%  Similarity=0.038  Sum_probs=93.2

Q ss_pred             EEecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCC---CCCeEE
Q psy8015           4 VFVSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTID---PDHDYD   75 (165)
Q Consensus         4 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~---~~nV~~   75 (165)
                      |||...++.-..-|++.+.. ..+.+|||+ ||+|.++..+++..  .+|+++|.|+.+++.|+  ++..+   ..++++
T Consensus       207 VFs~~~LD~GtrllL~~lp~-~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~  285 (378)
T PRK15001        207 VFSRTGLDIGARFFMQHLPE-NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEF  285 (378)
T ss_pred             ccCCCCcChHHHHHHHhCCc-ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEE
Confidence            78888888888889999864 456799999 99999999999875  58999999999999996  33333   347899


Q ss_pred             EEccCCCCCCCCCCccEEEEcCCCCCc-----------hHHHHhccccCcEEEEEecC
Q psy8015          76 LIADGRASFGDNGPYDAIHVGAAYPRY-----------PEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        76 ~~gD~~~~~~~~~~fD~I~i~~~~~~~-----------p~~l~~~LkpgG~lvi~~~~  122 (165)
                      +.+|+....+ ..+||+|+++..++..           .....+.|+|||++++..+.
T Consensus       286 ~~~D~l~~~~-~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr  342 (378)
T PRK15001        286 MINNALSGVE-PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR  342 (378)
T ss_pred             EEccccccCC-CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec
Confidence            9999876543 3589999998776521           12457899999999998653

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.47  E-value=3.7e-13  Score=115.77  Aligned_cols=107  Identities=15%  Similarity=0.125  Sum_probs=85.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCC-CCeEEEEccCCCCCCCCCC
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDP-DHDYDLIADGRASFGDNGP   89 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~-~nV~~~~gD~~~~~~~~~~   89 (165)
                      ....+++.+. ..++.+|||| ||+|..+..+++.. .+|+++|+|+++++.|+.+..+. .+++++.+|..+...+.++
T Consensus       254 ~te~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~  332 (475)
T PLN02336        254 TTKEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS  332 (475)
T ss_pred             HHHHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence            3566777775 4788999999 99999999888754 58999999999999996332233 3699999998764333568


Q ss_pred             ccEEEEcCCCCCch------HHHHhccccCcEEEEEe
Q psy8015          90 YDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        90 fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~  120 (165)
                      ||+|++.....+++      .++.+.|||||++++..
T Consensus       333 fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~  369 (475)
T PLN02336        333 FDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISD  369 (475)
T ss_pred             EEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            99999988887665      36789999999999864

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.46  E-value=1.2e-13  Score=106.60  Aligned_cols=110  Identities=15%  Similarity=0.114  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccC-CCCC-
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADG-RASF-   84 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~-~~~~-   84 (165)
                      .....+.+++.  .++.+|||+ ||+|..+..+++..  .+|+++|+++++++.|+  ++..+.+|++++++|+ .... 
T Consensus        28 ~~~~~~~~~~~--~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~  105 (202)
T PRK00121         28 PAPLDWAELFG--NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLD  105 (202)
T ss_pred             CCCCCHHHHcC--CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHH
Confidence            34445666664  368899999 99999999998865  47999999999999996  4555678899999998 3311 


Q ss_pred             -CCCCCccEEEEcCCCCC--------------chHHHHhccccCcEEEEEecCC
Q psy8015          85 -GDNGPYDAIHVGAAYPR--------------YPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        85 -~~~~~fD~I~i~~~~~~--------------~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                       .+.++||.|++....+.              +.+.+.+.|||||++++.....
T Consensus       106 ~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~  159 (202)
T PRK00121        106 MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE  159 (202)
T ss_pred             HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence             23468999999754321              2346789999999999976543

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.46  E-value=1.6e-13  Score=115.11  Aligned_cols=126  Identities=6%  Similarity=-0.122  Sum_probs=99.4

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC-CCCccEEEEcCCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD-NGPYDAIHVGAAYP  100 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~-~~~fD~I~i~~~~~  100 (165)
                      .++.+|||+ ||+|.++..+|....+|+++|+++++++.|+  .+..+.+|++++.+|+.+.... ..+||.|+++....
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~  311 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR  311 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence            356899999 9999999999988889999999999999996  5566778999999998653321 24699999997765


Q ss_pred             CchHH---HHhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEeeeccC
Q psy8015         101 RYPEI---FIHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGLLYDV  155 (165)
Q Consensus       101 ~~p~~---l~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~  155 (165)
                      ...+.   ....++|++.+++.+++.+. ..+..+     ++|..+.+..+++.|.+..
T Consensus       312 G~~~~~l~~l~~~~p~~ivyvsc~p~TlaRDl~~L-----~gy~l~~~~~~DmFPqT~H  365 (374)
T TIGR02085       312 GIGKELCDYLSQMAPKFILYSSCNAQTMAKDIAEL-----SGYQIERVQLFDMFPHTSH  365 (374)
T ss_pred             CCcHHHHHHHHhcCCCeEEEEEeCHHHHHHHHHHh-----cCceEEEEEEeccCCCCCc
Confidence            43332   24568999999999987654 444444     2499999999999998764

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.46  E-value=3e-13  Score=115.45  Aligned_cols=109  Identities=16%  Similarity=0.106  Sum_probs=84.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC-C
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF-G   85 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~-~   85 (165)
                      ..+.++..+....++++|||+ ||+|..|..++.+.   ++|+++|+++++++.++  ++++|++|++++++|+.... .
T Consensus       224 ~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~  303 (431)
T PRK14903        224 ESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEY  303 (431)
T ss_pred             HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhh
Confidence            334445444455889999999 99999999999875   68999999999999996  77788888999999986532 1


Q ss_pred             CCCCccEEEEcCCCC------Cch----------------------HHHHhccccCcEEEEEec
Q psy8015          86 DNGPYDAIHVGAAYP------RYP----------------------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        86 ~~~~fD~I~i~~~~~------~~p----------------------~~l~~~LkpgG~lvi~~~  121 (165)
                      ..++||+|++++.+.      .-|                      +...+.|||||+|+....
T Consensus       304 ~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC  367 (431)
T PRK14903        304 VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC  367 (431)
T ss_pred             hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            246799999986652      112                      235789999999998764

>PRK14967 putative methyltransferase; Provisional

Probab=99.45  E-value=9.4e-13  Score=102.94  Aligned_cols=110  Identities=11%  Similarity=0.028  Sum_probs=81.1

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD   86 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~   86 (165)
                      +.....++..+. ..++++|||+ ||+|.++..+++.. .+|+++|+++++++.|+  ++..+. +++++.+|.....+ 
T Consensus        22 s~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~~-   98 (223)
T PRK14967         22 TQLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAVE-   98 (223)
T ss_pred             HHHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhcc-
Confidence            334445554442 3678999999 99999999999865 48999999999999886  444444 68999999866433 


Q ss_pred             CCCccEEEEcCCCCC---------------------------chHHHHhccccCcEEEEEecCC
Q psy8015          87 NGPYDAIHVGAAYPR---------------------------YPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        87 ~~~fD~I~i~~~~~~---------------------------~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      .++||+|+++.....                           +.+...+.|||||++++...+.
T Consensus        99 ~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~  162 (223)
T PRK14967         99 FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL  162 (223)
T ss_pred             CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            468999999853221                           1134578999999999876553

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.45  E-value=1.7e-13  Score=96.00  Aligned_cols=95  Identities=16%  Similarity=0.017  Sum_probs=75.5

Q ss_pred             CCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCC--CCCCCccEEEEcCCC
Q psy8015          27 RLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASF--GDNGPYDAIHVGAAY   99 (165)
Q Consensus        27 ~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~--~~~~~fD~I~i~~~~   99 (165)
                      |.+|||+ ||+|.++..+++.. .+++++|+|+..++.|+  ++..+. ++++++++|..+..  .+.++||+|+.+...
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            5799999 99999999999888 89999999999999996  555565 57999999986532  345899999998765


Q ss_pred             CCc--------------hHHHHhccccCcEEEEEec
Q psy8015         100 PRY--------------PEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       100 ~~~--------------p~~l~~~LkpgG~lvi~~~  121 (165)
                      ...              -+.+.+.|||||++++..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            421              1357899999999998764

...

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.45  E-value=8e-13  Score=102.10  Aligned_cols=113  Identities=8%  Similarity=0.089  Sum_probs=84.9

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHH-HhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTT-LPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG   85 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~-la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~   85 (165)
                      .+.....++.++....++.+|||+ ||||+++.. +++...+|+++|.++++++.|+  ++.++.+|++++.+|+.+.++
T Consensus        37 ~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~  116 (199)
T PRK10909         37 TDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA  116 (199)
T ss_pred             CHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh
Confidence            344555667777533568899999 999999985 6777789999999999999986  666777789999999876443


Q ss_pred             C-CCCccEEEEcCCCC-CchHHH----Hh--ccccCcEEEEEecC
Q psy8015          86 D-NGPYDAIHVGAAYP-RYPEIF----IH--HLKSGGRLVIPIGD  122 (165)
Q Consensus        86 ~-~~~fD~I~i~~~~~-~~p~~l----~~--~LkpgG~lvi~~~~  122 (165)
                      . ..+||+||++..+. .+.+.+    .+  +|+|++.+++.+..
T Consensus       117 ~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        117 QPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             hcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            2 34799999998843 333332    22  36889999988764

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.44  E-value=8.4e-13  Score=113.06  Aligned_cols=102  Identities=20%  Similarity=0.129  Sum_probs=80.7

Q ss_pred             HHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015          19 TYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDA   92 (165)
Q Consensus        19 ~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~   92 (165)
                      .++ ...++++|||+ ||+|..|..+++..   ++|+++|+++++++.++  ++++|++||+++.+|+.... +.++||+
T Consensus       244 ~~l-~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~  321 (445)
T PRK14904        244 LLL-NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDA  321 (445)
T ss_pred             Hhc-CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCE
Confidence            344 44789999999 99999999888754   58999999999999985  67788889999999987643 3468999


Q ss_pred             EEEcCCCC------C----------------------chHHHHhccccCcEEEEEecC
Q psy8015          93 IHVGAAYP------R----------------------YPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        93 I~i~~~~~------~----------------------~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      |+++..+.      .                      +.+...+.|||||+++...-.
T Consensus       322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs  379 (445)
T PRK14904        322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS  379 (445)
T ss_pred             EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            99975431      0                      123457899999999997643

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.44  E-value=8.7e-13  Score=106.91  Aligned_cols=102  Identities=13%  Similarity=0.013  Sum_probs=78.9

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDA   92 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~   92 (165)
                      .+++.+.. .++.+|||+ ||+|..+..+++...+|+++|+|+++++.++  .+..++ ++++...|...... .++||+
T Consensus       111 ~~~~~~~~-~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~-~~~fD~  187 (287)
T PRK12335        111 EVLEAVQT-VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI-QEEYDF  187 (287)
T ss_pred             HHHHHhhc-cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc-cCCccE
Confidence            34444433 345699999 9999999999998889999999999999986  444566 79999998765322 468999


Q ss_pred             EEEcCCCCCch--------HHHHhccccCcEEEEEe
Q psy8015          93 IHVGAAYPRYP--------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        93 I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~  120 (165)
                      |++....++++        ..+.+.|+|||++++..
T Consensus       188 I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~  223 (287)
T PRK12335        188 ILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC  223 (287)
T ss_pred             EEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            99988766443        35788999999977654

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.43  E-value=2.4e-12  Score=100.41  Aligned_cols=111  Identities=15%  Similarity=0.061  Sum_probs=82.6

Q ss_pred             CCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhccc-ccC-------------CCCC
Q psy8015           8 GSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLS-STI-------------DPDH   72 (165)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~-~~~-------------~~~n   72 (165)
                      +..+.....++..+.. .++.+|||+ ||.|..+.+||..+.+|+|+|+|+.+++.+.. +..             ...+
T Consensus        17 ~~p~~~l~~~~~~l~~-~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (213)
T TIGR03840        17 SEVNPLLVKHWPALGL-PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGN   95 (213)
T ss_pred             CCCCHHHHHHHHhhCC-CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCc
Confidence            3445556666665532 577899999 99999999999999999999999999998631 100             1236


Q ss_pred             eEEEEccCCCCCCC-CCCccEEEEcCCCCCchH--------HHHhccccCcEEEEE
Q psy8015          73 DYDLIADGRASFGD-NGPYDAIHVGAAYPRYPE--------IFIHHLKSGGRLVIP  119 (165)
Q Consensus        73 V~~~~gD~~~~~~~-~~~fD~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~  119 (165)
                      |+++++|..+...+ .++||.|+-.+...++|.        .+.+.|||||++++.
T Consensus        96 v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~  151 (213)
T TIGR03840        96 IEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI  151 (213)
T ss_pred             eEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            99999998764322 357999988777666653        578999999985554

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.43  E-value=8.6e-13  Score=106.47  Aligned_cols=108  Identities=15%  Similarity=0.052  Sum_probs=77.8

Q ss_pred             chHHHHHHHHHHhc---CCCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCC
Q psy8015          10 VSGAVAKYVTYLSG---HSKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGR   81 (165)
Q Consensus        10 ~~~~~~~~l~~l~~---~~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~   81 (165)
                      ...+..+.++.+..   ++||++|||| ||-|.++..+|+. .-+|+++.+|++..+.|+  +++.|+.+ +++...|..
T Consensus        43 Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~  122 (273)
T PF02353_consen   43 LEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYR  122 (273)
T ss_dssp             HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GG
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecc
Confidence            44445555554433   3799999999 9999999999988 569999999999999996  67778764 999999965


Q ss_pred             CCCCCCCCccEEEEcCCCCCch--------HHHHhccccCcEEEEEe
Q psy8015          82 ASFGDNGPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        82 ~~~~~~~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~  120 (165)
                      + ++  .+||+|+.-+..+++.        +.+.+.|||||++++-.
T Consensus       123 ~-~~--~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  123 D-LP--GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT  166 (273)
T ss_dssp             G------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred             c-cC--CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence            4 33  3899999998887663        35789999999998743

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.42  E-value=1.8e-13  Score=114.35  Aligned_cols=125  Identities=10%  Similarity=-0.002  Sum_probs=97.7

Q ss_pred             CCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC----------------C
Q psy8015          27 RLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD----------------N   87 (165)
Q Consensus        27 ~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~----------------~   87 (165)
                      +.+|||+ ||+|.++..+++.+.+|+++|.++.+++.|+  .+..+++|++++.+|+.+.++.                .
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~  286 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS  286 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence            3689999 9999999999999999999999999999996  5556788999999998653211                1


Q ss_pred             CCccEEEEcCCCCCchHHHH-hccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEeeeccC
Q psy8015          88 GPYDAIHVGAAYPRYPEIFI-HHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGLLYDV  155 (165)
Q Consensus        88 ~~fD~I~i~~~~~~~p~~l~-~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~  155 (165)
                      .+||+||++....-+.+++. ...+|++.+++.|++.+. ..+..+.+    +|..+.+..+++.|.+.+
T Consensus       287 ~~~D~v~lDPPR~G~~~~~l~~l~~~~~ivyvSC~p~tlarDl~~L~~----gY~l~~v~~~DmFPqT~H  352 (362)
T PRK05031        287 YNFSTIFVDPPRAGLDDETLKLVQAYERILYISCNPETLCENLETLSQ----THKVERFALFDQFPYTHH  352 (362)
T ss_pred             CCCCEEEECCCCCCCcHHHHHHHHccCCEEEEEeCHHHHHHHHHHHcC----CcEEEEEEEcccCCCCCc
Confidence            25999999988765555443 334578999999987654 44555532    399999999999998864

>PRK08317 hypothetical protein; Provisional

Probab=99.42  E-value=2.1e-12  Score=100.21  Aligned_cols=108  Identities=13%  Similarity=0.055  Sum_probs=84.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcccc-cCCCCCeEEEEccCCCCCCCC
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPLSS-TIDPDHDYDLIADGRASFGDN   87 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~-~~~~~nV~~~~gD~~~~~~~~   87 (165)
                      ....+++.+. ..++++|||+ ||+|..+..+++..   .+|+++|.++++++.|+.+ .....+++++.+|........
T Consensus         7 ~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~   85 (241)
T PRK08317          7 YRARTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPD   85 (241)
T ss_pred             HHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCC
Confidence            3455666664 4789999999 99999999998865   5899999999999999732 223457999999986532334


Q ss_pred             CCccEEEEcCCCCCch------HHHHhccccCcEEEEEec
Q psy8015          88 GPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        88 ~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~~  121 (165)
                      ++||.|++....++++      +.+.+.|||||++++...
T Consensus        86 ~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  125 (241)
T PRK08317         86 GSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT  125 (241)
T ss_pred             CCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence            7899999987776543      468899999999998653

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.42  E-value=1.5e-12  Score=108.03  Aligned_cols=115  Identities=15%  Similarity=0.089  Sum_probs=89.1

Q ss_pred             EEecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEc
Q psy8015           4 VFVSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIA   78 (165)
Q Consensus         4 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~g   78 (165)
                      ||+-...+.-...+++.+.. ....+|||+ ||+|.++..+++..  .+|+++|+|+.+++.|+  ++..++ +.+++.+
T Consensus       175 vFs~~~lD~gt~lLl~~l~~-~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~~~  252 (342)
T PRK09489        175 VFSRDGLDVGSQLLLSTLTP-HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-EGEVFAS  252 (342)
T ss_pred             CCCCCCCCHHHHHHHHhccc-cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCEEEEc
Confidence            56666676677788888854 456689999 99999999999876  38999999999999996  454454 3577888


Q ss_pred             cCCCCCCCCCCccEEEEcCCCCCc-----------hHHHHhccccCcEEEEEecC
Q psy8015          79 DGRASFGDNGPYDAIHVGAAYPRY-----------PEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        79 D~~~~~~~~~~fD~I~i~~~~~~~-----------p~~l~~~LkpgG~lvi~~~~  122 (165)
                      |.....  .++||.|+++..++.-           ...+.+.|||||+++++.+.
T Consensus       253 D~~~~~--~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~  305 (342)
T PRK09489        253 NVFSDI--KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (342)
T ss_pred             cccccc--CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence            876533  4689999998776531           23467889999999997754

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.42  E-value=1.4e-12  Score=111.14  Aligned_cols=104  Identities=14%  Similarity=0.150  Sum_probs=80.1

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC--CCCC
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF--GDNG   88 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~--~~~~   88 (165)
                      ....++ ...++++|||+ ||+|..|..+++..  ++|+++|+++++++.++  +++.|.. ++++.+|+....  ...+
T Consensus       235 ~~~~~l-~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~~~~~  312 (427)
T PRK10901        235 LAATLL-APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQWWDGQ  312 (427)
T ss_pred             HHHHHc-CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhhcccC
Confidence            333455 45789999999 99999999999876  48999999999999995  6666764 789999987532  2246


Q ss_pred             CccEEEEcCCCCC----------------------------chHHHHhccccCcEEEEEec
Q psy8015          89 PYDAIHVGAAYPR----------------------------YPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        89 ~fD~I~i~~~~~~----------------------------~p~~l~~~LkpgG~lvi~~~  121 (165)
                      +||.|++++.+..                            +.+.+.+.|||||+++....
T Consensus       313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc  373 (427)
T PRK10901        313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC  373 (427)
T ss_pred             CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            7999998865421                            12346789999999998753

>PRK14968 putative methyltransferase; Provisional

Probab=99.42  E-value=2.5e-12  Score=96.90  Aligned_cols=105  Identities=13%  Similarity=0.103  Sum_probs=81.1

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCC--eEEEEccCCCCCCCCCCc
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDH--DYDLIADGRASFGDNGPY   90 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~n--V~~~~gD~~~~~~~~~~f   90 (165)
                      .+.+++.. .+++++||+ ||+|+++..+++...+|+++|+++++++.++  ++..+..+  +.++++|..+.+.+ .+|
T Consensus        14 ~l~~~~~~-~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~   91 (188)
T PRK14968         14 LLAENAVD-KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG-DKF   91 (188)
T ss_pred             HHHHhhhc-cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc-cCc
Confidence            34555543 688999999 9999999999988889999999999999885  44445544  89999998765543 489


Q ss_pred             cEEEEcCCCCC---------------------------chHHHHhccccCcEEEEEecC
Q psy8015          91 DAIHVGAAYPR---------------------------YPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        91 D~I~i~~~~~~---------------------------~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      |+|+.+.....                           +.+++.+.|||||.+++....
T Consensus        92 d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~  150 (188)
T PRK14968         92 DVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS  150 (188)
T ss_pred             eEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            99998754311                           234667999999999887654

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.42  E-value=1.5e-12  Score=103.33  Aligned_cols=94  Identities=11%  Similarity=-0.023  Sum_probs=75.4

Q ss_pred             CCCCeEEEE-ccccHHHHHHhcc----CCcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCCccEEEEc
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTF----IPNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGPYDAIHVG   96 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~fD~I~i~   96 (165)
                      .++.+|||+ ||+|..+..+++.    ..+|+++|.|++|++.|+  ++..+.. +++++.+|+.+. + ...||+|+++
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~D~vv~~  132 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-A-IENASMVVLN  132 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC-C-CCCCCEEehh
Confidence            578999999 9999999888874    258999999999999996  4444543 799999998653 2 2459999988


Q ss_pred             CCCCCch--------HHHHhccccCcEEEEEe
Q psy8015          97 AAYPRYP--------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        97 ~~~~~~p--------~~l~~~LkpgG~lvi~~  120 (165)
                      ...++++        .++.+.|||||++++..
T Consensus       133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            7776553        36789999999999964

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.42  E-value=1.2e-12  Score=111.96  Aligned_cols=106  Identities=15%  Similarity=0.082  Sum_probs=81.5

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC-C
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD-N   87 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~-~   87 (165)
                      ..++..+....++++|||+ ||+|..|..+++..   ++|+++|+++++++.++  ++++|++|++++++|+.+.... .
T Consensus       239 s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~  318 (444)
T PRK14902        239 SMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA  318 (444)
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc
Confidence            3344433345789999999 99999999999864   68999999999999995  6778888899999998764221 2


Q ss_pred             CCccEEEEcCCCCC----------------------------chHHHHhccccCcEEEEEe
Q psy8015          88 GPYDAIHVGAAYPR----------------------------YPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        88 ~~fD~I~i~~~~~~----------------------------~p~~l~~~LkpgG~lvi~~  120 (165)
                      +.||+|++++.+..                            +.+...+.|||||+|+...
T Consensus       319 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst  379 (444)
T PRK14902        319 EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST  379 (444)
T ss_pred             ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence            68999999865321                            1224568899999999653

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.41  E-value=1.5e-12  Score=107.31  Aligned_cols=103  Identities=13%  Similarity=0.003  Sum_probs=79.7

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCC-CCCeEEEEccCCCCCCCCCC
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTID-PDHDYDLIADGRASFGDNGP   89 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~-~~nV~~~~gD~~~~~~~~~~   89 (165)
                      .+++..+.. .++++|||| ||+|+++..++... .+|+++|.++.++..++  .+..+ ..|++++.+|..+. +..++
T Consensus       112 ~~l~~~l~~-l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~~~~  189 (322)
T PRK15068        112 DRVLPHLSP-LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PALKA  189 (322)
T ss_pred             HHHHHhhCC-CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CCcCC
Confidence            455556643 468999999 99999999998875 46999999999998764  12222 24799999998653 33578


Q ss_pred             ccEEEEcCCCCCch------HHHHhccccCcEEEEE
Q psy8015          90 YDAIHVGAAYPRYP------EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        90 fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~  119 (165)
                      ||+|++.+..++..      ..+.+.|+|||++++.
T Consensus       190 FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~  225 (322)
T PRK15068        190 FDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLE  225 (322)
T ss_pred             cCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence            99999988876653      3678999999999975

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.41  E-value=1.7e-12  Score=103.33  Aligned_cols=108  Identities=13%  Similarity=0.051  Sum_probs=77.5

Q ss_pred             EEecCCchHHHHHHHHHHhc-CCCCCeEEEE-ccccHHHHHHhccCC-cEEEEeCCHHHHHhcc--cccCCC-CCeEEEE
Q psy8015           4 VFVSGSVSGAVAKYVTYLSG-HSKRLDCLAL-TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPL--SSTIDP-DHDYDLI   77 (165)
Q Consensus         4 ~~~~~~~~~~~~~~l~~l~~-~~~~~~vLei-~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~   77 (165)
                      .|+++.-+. ...+++.+.. ..++++|||+ ||+|+++..+++... +|+++|+|+.+++.|+  .+..++ .++++..
T Consensus        97 afgtg~h~t-t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~  175 (250)
T PRK00517         97 AFGTGTHPT-TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQ  175 (250)
T ss_pred             ccCCCCCHH-HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEcc
Confidence            467776444 3335555532 2578999999 999999998888764 5999999999999996  444454 3355444


Q ss_pred             ccCCCCCCCCCCccEEEEcCCCCC---chHHHHhccccCcEEEEEe
Q psy8015          78 ADGRASFGDNGPYDAIHVGAAYPR---YPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        78 gD~~~~~~~~~~fD~I~i~~~~~~---~p~~l~~~LkpgG~lvi~~  120 (165)
                      +|.        +||+|+++...+.   +.+.+.+.|||||++++.-
T Consensus       176 ~~~--------~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsg  213 (250)
T PRK00517        176 GDL--------KADVIVANILANPLLELAPDLARLLKPGGRLILSG  213 (250)
T ss_pred             CCC--------CcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            432        7999998755432   3356789999999999863

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.41  E-value=2.7e-13  Score=113.00  Aligned_cols=125  Identities=10%  Similarity=-0.043  Sum_probs=97.5

Q ss_pred             CCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC----------------C
Q psy8015          27 RLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD----------------N   87 (165)
Q Consensus        27 ~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~----------------~   87 (165)
                      +++|||+ ||+|.++..|++.+.+|+++|.++++++.|+  .+..+++|++++.+|+.+.++.                .
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  277 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS  277 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence            3579999 9999999999999899999999999999996  5556788999999998653221                1


Q ss_pred             CCccEEEEcCCCCCchH-HHHhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEeeeccC
Q psy8015          88 GPYDAIHVGAAYPRYPE-IFIHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGLLYDV  155 (165)
Q Consensus        88 ~~fD~I~i~~~~~~~p~-~l~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~  155 (165)
                      ..||.|+++....-+.+ .+...++|++.+++.|++.+. ..+..+.+   + |....+..+++.|.+.+
T Consensus       278 ~~~d~v~lDPPR~G~~~~~l~~l~~~~~ivYvsC~p~tlaRDl~~L~~---~-Y~l~~v~~~DmFP~T~H  343 (353)
T TIGR02143       278 YNCSTIFVDPPRAGLDPDTCKLVQAYERILYISCNPETLKANLEQLSE---T-HRVERFALFDQFPYTHH  343 (353)
T ss_pred             CCCCEEEECCCCCCCcHHHHHHHHcCCcEEEEEcCHHHHHHHHHHHhc---C-cEEEEEEEcccCCCCCc
Confidence            24899999987655433 334445689999999987664 45555542   3 99999999999998864

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.41  E-value=6.8e-13  Score=101.80  Aligned_cols=99  Identities=12%  Similarity=0.124  Sum_probs=79.6

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC---CCCCCccEEEEc
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF---GDNGPYDAIHVG   96 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~---~~~~~fD~I~i~   96 (165)
                      .+..++||| ||+|.++..+|+..  .+|+++|+++++++.|+  .+..+++|++++++|+...+   .+.+.||.|+++
T Consensus        15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~   94 (194)
T TIGR00091        15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN   94 (194)
T ss_pred             CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence            356799999 99999999999875  58999999999999985  55667889999999986422   234589999998


Q ss_pred             CCCCC--------------chHHHHhccccCcEEEEEecCC
Q psy8015          97 AAYPR--------------YPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        97 ~~~~~--------------~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      ...+.              +...+.+.|||||++++.....
T Consensus        95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~  135 (194)
T TIGR00091        95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE  135 (194)
T ss_pred             CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence            65431              2346789999999999877654

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PTZ00146 fibrillarin; Provisional

Probab=99.41  E-value=2e-12  Score=104.81  Aligned_cols=98  Identities=15%  Similarity=0.111  Sum_probs=72.8

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC--C-CCCCccEEEEc
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF--G-DNGPYDAIHVG   96 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~--~-~~~~fD~I~i~   96 (165)
                      ++|+++|||+ ||+|++|..+|+++   ++|+|+|++++|.+.........+||.++.+|+....  . ....||+||++
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D  209 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD  209 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence            3789999999 99999999999987   6899999999755333200001268999999986432  1 23579999999


Q ss_pred             CCCCCch----HHHHhccccCcEEEEEec
Q psy8015          97 AAYPRYP----EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        97 ~~~~~~p----~~l~~~LkpgG~lvi~~~  121 (165)
                      .+.++-.    .++.+.|||||++++.+.
T Consensus       210 va~pdq~~il~~na~r~LKpGG~~vI~ik  238 (293)
T PTZ00146        210 VAQPDQARIVALNAQYFLKNGGHFIISIK  238 (293)
T ss_pred             CCCcchHHHHHHHHHHhccCCCEEEEEEe
Confidence            8754422    346789999999999543

>PLN03075 nicotianamine synthase; Provisional

Probab=99.39  E-value=2.3e-12  Score=104.62  Aligned_cols=107  Identities=13%  Similarity=0.044  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-cccc-HHHHHHhcc-C--CcEEEEeCCHHHHHhcc--cc-cCCCC-CeEEEEccCCC
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNT-KQSTTLPTF-I--PNSFNINVYYYLSGGPL--SS-TIDPD-HDYDLIADGRA   82 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG-~~t~~la~~-~--~~V~aiD~~~~~~~~A~--~~-~~~~~-nV~~~~gD~~~   82 (165)
                      ....+++..+.. .+.++|+|| ||.| +.+.+++.. .  ++++++|+|+++++.||  ++ ..++. +++|+.+|+.+
T Consensus       110 ~lE~~~L~~~~~-~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~  188 (296)
T PLN03075        110 KLEFDLLSQHVN-GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD  188 (296)
T ss_pred             HHHHHHHHHhhc-CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh
Confidence            344566666654 478999999 9955 666666642 2  57999999999999997  43 36765 49999999977


Q ss_pred             CCCCCCCccEEEEcCCCCC--------chHHHHhccccCcEEEEEe
Q psy8015          83 SFGDNGPYDAIHVGAAYPR--------YPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        83 ~~~~~~~fD~I~i~~~~~~--------~p~~l~~~LkpgG~lvi~~  120 (165)
                      ..+..++||+||+. +...        +-+.+.+.|+|||.+++-.
T Consensus       189 ~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        189 VTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             cccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            54445789999999 4332        2256889999999999965

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.39  E-value=1.4e-12  Score=95.55  Aligned_cols=102  Identities=16%  Similarity=0.080  Sum_probs=78.5

Q ss_pred             HHHHHHHHhc-CCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCcc
Q psy8015          14 VAKYVTYLSG-HSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYD   91 (165)
Q Consensus        14 ~~~~l~~l~~-~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD   91 (165)
                      ....+..+.. ..++.+|||+ ||+|.++..+++...+|+++|+++.+++.        .++.....+........++||
T Consensus         9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--------~~~~~~~~~~~~~~~~~~~fD   80 (161)
T PF13489_consen    9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--------RNVVFDNFDAQDPPFPDGSFD   80 (161)
T ss_dssp             HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--------TTSEEEEEECHTHHCHSSSEE
T ss_pred             HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--------hhhhhhhhhhhhhhccccchh
Confidence            3444454432 3689999999 99999999998887899999999999986        234444443333333457999


Q ss_pred             EEEEcCCCCCchH------HHHhccccCcEEEEEecCC
Q psy8015          92 AIHVGAAYPRYPE------IFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        92 ~I~i~~~~~~~p~------~l~~~LkpgG~lvi~~~~~  123 (165)
                      +|++....+++++      .+.+.|||||++++.....
T Consensus        81 ~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   81 LIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             EEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             hHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            9999999998874      5789999999999987653

...

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.39  E-value=1.7e-12  Score=111.64  Aligned_cols=106  Identities=13%  Similarity=0.065  Sum_probs=83.2

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC-C-CCCCCc
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS-F-GDNGPY   90 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~-~-~~~~~f   90 (165)
                      ...+++.+.. .++.+|||+ ||+|.++..|++..++|+++|.+++|++.++......+|++++++|+... + .+.++|
T Consensus        26 ~~~il~~l~~-~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~f  104 (475)
T PLN02336         26 RPEILSLLPP-YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSV  104 (475)
T ss_pred             hhHHHhhcCc-cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCE
Confidence            4566666643 567899999 99999999999998999999999999998862222246899999998532 2 234689


Q ss_pred             cEEEEcCCCCCchH--------HHHhccccCcEEEEEe
Q psy8015          91 DAIHVGAAYPRYPE--------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        91 D~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~  120 (165)
                      |+|++....+++++        .+.+.|||||++++..
T Consensus       105 D~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d  142 (475)
T PLN02336        105 DLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE  142 (475)
T ss_pred             EEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            99999988776543        5789999999998853

>TIGR00452 methyltransferase, putative

Probab=99.39  E-value=2.1e-12  Score=106.06  Aligned_cols=102  Identities=12%  Similarity=0.008  Sum_probs=77.5

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc-ccc-CC-CCCeEEEEccCCCCCCCCCCc
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL-SST-ID-PDHDYDLIADGRASFGDNGPY   90 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~-~~~-~~-~~nV~~~~gD~~~~~~~~~~f   90 (165)
                      +++..+.. .++++|||| ||+|+++..++... .+|+++|.|+.|+.+++ .++ .+ ..++.+...+..+ ++....|
T Consensus       112 ~~l~~l~~-~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~-lp~~~~F  189 (314)
T TIGR00452       112 RVLPHLSP-LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ-LHELYAF  189 (314)
T ss_pred             HHHHhcCC-CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH-CCCCCCc
Confidence            45555533 578999999 99999998888765 47999999999998764 221 12 3468888888754 3434689


Q ss_pred             cEEEEcCCCCCch------HHHHhccccCcEEEEE
Q psy8015          91 DAIHVGAAYPRYP------EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        91 D~I~i~~~~~~~p------~~l~~~LkpgG~lvi~  119 (165)
                      |+|++.+...+.+      .++.+.|||||+|++.
T Consensus       190 D~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvle  224 (314)
T TIGR00452       190 DTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLE  224 (314)
T ss_pred             CEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEE
Confidence            9999999887654      3678999999999985

Known examples to date are restricted to the proteobacteria.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=8.3e-13  Score=112.50  Aligned_cols=139  Identities=9%  Similarity=-0.022  Sum_probs=109.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC---
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD---   86 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~---   86 (165)
                      +....++++.. .+++++||+ ||.|-+|..||+...+|+++|+++++++.|+  .+..+++|++|+.+|+.+-.+.   
T Consensus       281 l~~~a~~~~~~-~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~  359 (432)
T COG2265         281 LYETALEWLEL-AGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWE  359 (432)
T ss_pred             HHHHHHHHHhh-cCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccc
Confidence            34455666643 678999999 9999999999999999999999999999996  6777899999999998763332   


Q ss_pred             CCCccEEEEcCCCCCchH---HHHhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEeeeccC
Q psy8015          87 NGPYDAIHVGAAYPRYPE---IFIHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGLLYDV  155 (165)
Q Consensus        87 ~~~fD~I~i~~~~~~~p~---~l~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~  155 (165)
                      ...||.|+++....-..+   .....++|-.++++.|++.+. ..+..+..   ++|....+..++..|.+.+
T Consensus       360 ~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~TlaRDl~~L~~---~gy~i~~v~~~DmFP~T~H  429 (432)
T COG2265         360 GYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNPATLARDLAILAS---TGYEIERVQPFDMFPHTHH  429 (432)
T ss_pred             cCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHh---CCeEEEEEEEeccCCCccc
Confidence            357899999977654443   234678899999999998764 45555544   3477888888888888764

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.39  E-value=2.7e-12  Score=106.36  Aligned_cols=103  Identities=9%  Similarity=-0.029  Sum_probs=79.3

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDA   92 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~   92 (165)
                      ..++.+....++.+|||+ ||+|.++..+++..  .+|+++|.+++|++.|+.+ ....|++++.+|+.+...+.++||+
T Consensus       103 ~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k-~~~~~i~~i~gD~e~lp~~~~sFDv  181 (340)
T PLN02490        103 DALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECKIIEGDAEDLPFPTDYADR  181 (340)
T ss_pred             HHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh-hhccCCeEEeccHHhCCCCCCceeE
Confidence            344443222468899999 99999998888754  5899999999999999732 2345799999998763334578999


Q ss_pred             EEEcCCCCCch------HHHHhccccCcEEEEE
Q psy8015          93 IHVGAAYPRYP------EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        93 I~i~~~~~~~p------~~l~~~LkpgG~lvi~  119 (165)
                      |++....++.+      +++.+.|||||++++.
T Consensus       182 VIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi  214 (340)
T PLN02490        182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLI  214 (340)
T ss_pred             EEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            99988777654      3688999999999875

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.38  E-value=5e-12  Score=107.75  Aligned_cols=110  Identities=17%  Similarity=0.200  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASF   84 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~   84 (165)
                      +.....+..+|. ..++++|||+ ||+|+.|..+++..  ++|+++|+++++++.++  ++++|++ ++++..+|+....
T Consensus       224 d~~s~~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~  302 (426)
T TIGR00563       224 DASAQWVATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS  302 (426)
T ss_pred             CHHHHHHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc
Confidence            333444555554 5789999999 99999999999876  59999999999999985  6677775 2344667765322


Q ss_pred             C--CCCCccEEEEcCCCC------Cch----------------------HHHHhccccCcEEEEEec
Q psy8015          85 G--DNGPYDAIHVGAAYP------RYP----------------------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        85 ~--~~~~fD~I~i~~~~~------~~p----------------------~~l~~~LkpgG~lvi~~~  121 (165)
                      .  +.++||+|++++.+.      +.|                      +...+.|||||+|+....
T Consensus       303 ~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc  369 (426)
T TIGR00563       303 QWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC  369 (426)
T ss_pred             ccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            1  356899999975432      222                      235788999999999754

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.38  E-value=4.3e-12  Score=103.00  Aligned_cols=113  Identities=12%  Similarity=0.051  Sum_probs=81.0

Q ss_pred             EEecCCchHH--HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCC-CeEEE
Q psy8015           4 VFVSGSVSGA--VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPD-HDYDL   76 (165)
Q Consensus         4 ~~~~~~~~~~--~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~   76 (165)
                      .|++|.-+..  ..++++.+.  .++++|||+ ||+|+++..+++.. .+|+++|+|+.+++.|+  .+..+.. ++.+.
T Consensus       137 aFgtG~h~tt~l~l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~  214 (288)
T TIGR00406       137 AFGTGTHPTTSLCLEWLEDLD--LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVK  214 (288)
T ss_pred             cccCCCCHHHHHHHHHHHhhc--CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEE
Confidence            4777764433  223344332  578999999 99999999888875 58999999999999996  4444554 46777


Q ss_pred             EccCCCCCCCCCCccEEEEcCCCCC---chHHHHhccccCcEEEEEe
Q psy8015          77 IADGRASFGDNGPYDAIHVGAAYPR---YPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        77 ~gD~~~~~~~~~~fD~I~i~~~~~~---~p~~l~~~LkpgG~lvi~~  120 (165)
                      .+|... . ..++||+|+++...+.   +.+.+.+.|||||++++.-
T Consensus       215 ~~~~~~-~-~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sg  259 (288)
T TIGR00406       215 LIYLEQ-P-IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSG  259 (288)
T ss_pred             eccccc-c-cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            776322 2 2468999999765543   3356789999999999853

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.38  E-value=3.2e-13  Score=92.29  Aligned_cols=86  Identities=14%  Similarity=0.092  Sum_probs=54.0

Q ss_pred             EEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC--CCCccEEEEcCCCCCch
Q psy8015          31 LAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD--NGPYDAIHVGAAYPRYP  103 (165)
Q Consensus        31 Lei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~--~~~fD~I~i~~~~~~~p  103 (165)
                      ||| ||+|.++..+...  ..+++++|+|+.|++.|+  ++..+..+......+..+....  .++||.|++....++++
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~   80 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE   80 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence            799 9999999999888  468999999999998885  4555555555555554443222  25899999999998875


Q ss_pred             H------HHHhccccCcEE
Q psy8015         104 E------IFIHHLKSGGRL  116 (165)
Q Consensus       104 ~------~l~~~LkpgG~l  116 (165)
                      +      .+.+.|||||+|
T Consensus        81 ~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   81 DIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -HHHHHHHHTTT-TSS-EE
T ss_pred             hHHHHHHHHHHHcCCCCCC
Confidence            3      578999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=4.1e-12  Score=102.83  Aligned_cols=116  Identities=15%  Similarity=0.086  Sum_probs=97.1

Q ss_pred             EEecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcc--cccCCCCCeEEEEc
Q psy8015           4 VFVSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPL--SSTIDPDHDYDLIA   78 (165)
Q Consensus         4 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~g   78 (165)
                      |||-..++.=.+-+++.|.. ..+.+|||+ ||.|++++.+++..+  +|+-+|+|..+++.||  ++..+.+|.+++..
T Consensus       137 VFS~~~lD~GS~lLl~~l~~-~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s  215 (300)
T COG2813         137 VFSRDKLDKGSRLLLETLPP-DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWAS  215 (300)
T ss_pred             CCcCCCcChHHHHHHHhCCc-cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEe
Confidence            68888899999999999976 556699999 999999999999985  8999999999999997  55556777788888


Q ss_pred             cCCCCCCCCCCccEEEEcCCCCC-----------chHHHHhccccCcEEEEEecC
Q psy8015          79 DGRASFGDNGPYDAIHVGAAYPR-----------YPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        79 D~~~~~~~~~~fD~I~i~~~~~~-----------~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      |..+...+  +||.|+++..++.           +.....+.|++||.|.++...
T Consensus       216 ~~~~~v~~--kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~  268 (300)
T COG2813         216 NLYEPVEG--KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANR  268 (300)
T ss_pred             cccccccc--cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcC
Confidence            88776554  8999999988762           223457899999999998873

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.37  E-value=7.1e-12  Score=101.62  Aligned_cols=97  Identities=15%  Similarity=0.076  Sum_probs=76.0

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCCccEEEEcCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGPYDAIHVGAA   98 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~fD~I~i~~~   98 (165)
                      .++.+|||+ ||+|.++..+++..  .+|+++|+|+++++.|+  .+..++. +++++.+|..+.++ ..+||+|+++..
T Consensus       120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~-~~~fD~Iv~NPP  198 (284)
T TIGR03533       120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP-GRKYDLIVSNPP  198 (284)
T ss_pred             CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC-CCCccEEEECCC
Confidence            456799999 99999999999875  48999999999999996  5556664 69999999876553 357999999743


Q ss_pred             CC-------------Cc------------------hHHHHhccccCcEEEEEecC
Q psy8015          99 YP-------------RY------------------PEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        99 ~~-------------~~------------------p~~l~~~LkpgG~lvi~~~~  122 (165)
                      ..             +-                  ...+.+.|+|||++++-++.
T Consensus       199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~  253 (284)
T TIGR03533       199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN  253 (284)
T ss_pred             CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            21             01                  12346799999999998874

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=2.8e-12  Score=104.08  Aligned_cols=113  Identities=14%  Similarity=0.104  Sum_probs=82.4

Q ss_pred             EEecCCchHH--HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCC-eEEE
Q psy8015           4 VFVSGSVSGA--VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDH-DYDL   76 (165)
Q Consensus         4 ~~~~~~~~~~--~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~   76 (165)
                      -|++|+=+..  --++++.+.  .++++|||+ ||||.++...++++ .+|+++|+||-+++.|+  .+..+.++ ++..
T Consensus       140 AFGTG~HpTT~lcL~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~  217 (300)
T COG2264         140 AFGTGTHPTTSLCLEALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAK  217 (300)
T ss_pred             ccCCCCChhHHHHHHHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcc
Confidence            4788875544  346666653  589999999 99999999999997 57999999999999996  44444443 2233


Q ss_pred             EccCCCCCCCCCCccEEEEcCCCC---CchHHHHhccccCcEEEEE
Q psy8015          77 IADGRASFGDNGPYDAIHVGAAYP---RYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        77 ~gD~~~~~~~~~~fD~I~i~~~~~---~~p~~l~~~LkpgG~lvi~  119 (165)
                      ..+... .+..++||+|+.+--..   .+.+.+.+.|||||+++..
T Consensus       218 ~~~~~~-~~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlS  262 (300)
T COG2264         218 GFLLLE-VPENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILS  262 (300)
T ss_pred             cccchh-hcccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEE
Confidence            333322 23346999999985322   3456788999999999986

>PRK05785 hypothetical protein; Provisional

Probab=99.36  E-value=7.1e-12  Score=98.48  Aligned_cols=96  Identities=10%  Similarity=0.009  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHhcC-CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCC
Q psy8015          12 GAVAKYVTYLSGH-SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNG   88 (165)
Q Consensus        12 ~~~~~~l~~l~~~-~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~   88 (165)
                      .+..++++.+... .++.+|||+ ||||.++..+++.. .+|+++|.|++|++.|+.+      ..++++|+.+...+++
T Consensus        36 ~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~------~~~~~~d~~~lp~~d~  109 (226)
T PRK05785         36 RWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA------DDKVVGSFEALPFRDK  109 (226)
T ss_pred             HHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc------cceEEechhhCCCCCC
Confidence            3444555555322 457899999 99999999999874 7999999999999999743      1357888876434468


Q ss_pred             CccEEEEcCCCCCchH------HHHhccccC
Q psy8015          89 PYDAIHVGAAYPRYPE------IFIHHLKSG  113 (165)
Q Consensus        89 ~fD~I~i~~~~~~~p~------~l~~~Lkpg  113 (165)
                      +||+|++..+.+++++      ++.+.|||.
T Consensus       110 sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~  140 (226)
T PRK05785        110 SFDVVMSSFALHASDNIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             CEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence            9999999988876653      678999994

>KOG1540|consensus

Probab=99.36  E-value=8.2e-12  Score=98.74  Aligned_cols=110  Identities=13%  Similarity=0.076  Sum_probs=84.5

Q ss_pred             chHHHHHH-HHHHhcCCCCCeEEEE-ccccHHHHHHhccC--------CcEEEEeCCHHHHHhcc--cccCCC---CCeE
Q psy8015          10 VSGAVAKY-VTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--------PNSFNINVYYYLSGGPL--SSTIDP---DHDY   74 (165)
Q Consensus        10 ~~~~~~~~-l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--------~~V~aiD~~~~~~~~A~--~~~~~~---~nV~   74 (165)
                      +-+.+..+ +.+| ...++.++||+ +|||..|-.+.+.+        .+|+.+|+|++|+..++  .++.++   ..+.
T Consensus        84 iHRlWKd~~v~~L-~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~  162 (296)
T KOG1540|consen   84 IHRLWKDMFVSKL-GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVE  162 (296)
T ss_pred             hhHHHHHHhhhcc-CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceE
Confidence            44445544 4444 34788999999 99999998887754        47999999999999985  323343   2399


Q ss_pred             EEEccCCCCCCCCCCccEEEEcCCCCCch------HHHHhccccCcEEEEEe
Q psy8015          75 DLIADGRASFGDNGPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        75 ~~~gD~~~~~~~~~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~  120 (165)
                      ++.+||.+...+++.||+..+..+..+.+      .+..+.||||||+.+..
T Consensus       163 w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLe  214 (296)
T KOG1540|consen  163 WVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLE  214 (296)
T ss_pred             EEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            99999988666678999999998876544      36789999999998753

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.36  E-value=6.1e-13  Score=91.45  Aligned_cols=84  Identities=15%  Similarity=0.149  Sum_probs=64.6

Q ss_pred             EEEE-ccccHHHHHHhccC-----CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCC-CC
Q psy8015          30 CLAL-TSNTKQSTTLPTFI-----PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAA-YP  100 (165)
Q Consensus        30 vLei-~GsG~~t~~la~~~-----~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~-~~  100 (165)
                      |||+ ||+|..+..+++..     .+++++|+|++|++.|+  .+..+. +++++++|+.+.....++||+|++.+. .+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~   79 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSDGKFDLVVCSGLSLH   79 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence            7999 99999999999875     68999999999999996  433444 899999999763334579999999554 66


Q ss_pred             Cch--------HHHHhccccCc
Q psy8015         101 RYP--------EIFIHHLKSGG  114 (165)
Q Consensus       101 ~~p--------~~l~~~LkpgG  114 (165)
                      ++.        +++.+.|||||
T Consensus        80 ~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   80 HLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GSSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhCCCC
Confidence            554        35788999987

>PRK04457 spermidine synthase; Provisional

Probab=99.36  E-value=5.5e-12  Score=101.20  Aligned_cols=108  Identities=12%  Similarity=0.057  Sum_probs=79.8

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCC-CCCeEEEEccCCCCCCC-C
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTID-PDHDYDLIADGRASFGD-N   87 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~-~~nV~~~~gD~~~~~~~-~   87 (165)
                      ..|+..+....+.++|||| ||+|+++..+++..  .+|+++|+|+++++.|+  +...+ .++++++.+|+.+.+.. .
T Consensus        55 ~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~  134 (262)
T PRK04457         55 RAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHR  134 (262)
T ss_pred             HHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCC
Confidence            3444444433567899999 99999999888765  58999999999999997  33323 35799999998653322 3


Q ss_pred             CCccEEEEcCCCC-Cch---------HHHHhccccCcEEEEEecC
Q psy8015          88 GPYDAIHVGAAYP-RYP---------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        88 ~~fD~I~i~~~~~-~~p---------~~l~~~LkpgG~lvi~~~~  122 (165)
                      ++||+|+++.-.. .+|         +.+.+.|+|||++++.+..
T Consensus       135 ~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~  179 (262)
T PRK04457        135 HSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS  179 (262)
T ss_pred             CCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence            5899999985322 222         3577999999999997643

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.36  E-value=7.4e-12  Score=97.31  Aligned_cols=108  Identities=11%  Similarity=0.076  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHhcC--CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC
Q psy8015          12 GAVAKYVTYLSGH--SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD   86 (165)
Q Consensus        12 ~~~~~~l~~l~~~--~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~   86 (165)
                      .....+++.+...  .++.+|||+ ||+|.++..+++..  .+++++|+++++++.++.+. . +|++++.+|.......
T Consensus        18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~-~-~~~~~~~~d~~~~~~~   95 (240)
T TIGR02072        18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL-S-ENVQFICGDAEKLPLE   95 (240)
T ss_pred             HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc-C-CCCeEEecchhhCCCC
Confidence            3445566666532  234799999 99999999999876  46899999999999886321 1 4799999998764434


Q ss_pred             CCCccEEEEcCCCCCch------HHHHhccccCcEEEEEec
Q psy8015          87 NGPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        87 ~~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~~  121 (165)
                      .++||+|++....++.+      +.+.+.|+|||++++...
T Consensus        96 ~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~  136 (240)
T TIGR02072        96 DSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF  136 (240)
T ss_pred             CCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence            57899999988776542      467899999999998653

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.35  E-value=9.3e-12  Score=95.99  Aligned_cols=107  Identities=18%  Similarity=0.124  Sum_probs=82.2

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC---cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCC
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP---NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNG   88 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~---~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~   88 (165)
                      ....+++.+.. .++.+|||+ ||+|..+..+++...   +++++|+++.+++.++.+.....+++++.+|..+...+.+
T Consensus        27 ~~~~~~~~~~~-~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  105 (223)
T TIGR01934        27 WRRRAVKLIGV-FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDN  105 (223)
T ss_pred             HHHHHHHHhcc-CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCC
Confidence            34456666643 578999999 999999999988764   8999999999999886221134579999999876433456


Q ss_pred             CccEEEEcCCCCCch------HHHHhccccCcEEEEEe
Q psy8015          89 PYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        89 ~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~  120 (165)
                      +||+|++....++++      +.+.+.|+|||++++..
T Consensus       106 ~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  143 (223)
T TIGR01934       106 SFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILE  143 (223)
T ss_pred             cEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence            899999987766543      36789999999999754

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>KOG1270|consensus

Probab=99.35  E-value=6e-13  Score=105.41  Aligned_cols=94  Identities=18%  Similarity=0.168  Sum_probs=74.2

Q ss_pred             CCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccc-cCCC---C----CeEEEEccCCCCCCCCCCccEEEEcC
Q psy8015          27 RLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSS-TIDP---D----HDYDLIADGRASFGDNGPYDAIHVGA   97 (165)
Q Consensus        27 ~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~-~~~~---~----nV~~~~gD~~~~~~~~~~fD~I~i~~   97 (165)
                      |++|||+ ||+|-++..||+++..|+++|.+++|++.||.. ..+.   .    .+++.+.|+...   .++||+|++.-
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcse  166 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSE  166 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeHH
Confidence            4889999 999999999999999999999999999999732 2221   1    256666776432   24699999998


Q ss_pred             CCCCc--h----HHHHhccccCcEEEEEecCC
Q psy8015          98 AYPRY--P----EIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        98 ~~~~~--p----~~l~~~LkpgG~lvi~~~~~  123 (165)
                      .++|+  |    +.+.+.|||||+|++.....
T Consensus       167 vleHV~dp~~~l~~l~~~lkP~G~lfittinr  198 (282)
T KOG1270|consen  167 VLEHVKDPQEFLNCLSALLKPNGRLFITTINR  198 (282)
T ss_pred             HHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence            88876  4    35789999999999976543

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.35  E-value=1.3e-12  Score=101.02  Aligned_cols=104  Identities=14%  Similarity=0.152  Sum_probs=86.7

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCcc
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYD   91 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD   91 (165)
                      ..++..+. ..+..+|.|+ ||+|..|..|++.-  ..++++|-|++|++.|+-+   +.|++|..+|.. .|.+..++|
T Consensus        20 ~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r---lp~~~f~~aDl~-~w~p~~~~d   94 (257)
T COG4106          20 RDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR---LPDATFEEADLR-TWKPEQPTD   94 (257)
T ss_pred             HHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh---CCCCceecccHh-hcCCCCccc
Confidence            34555543 3678999999 99999999999875  5899999999999999532   568999999985 466678999


Q ss_pred             EEEEcCCCCCchH------HHHhccccCcEEEEEecCC
Q psy8015          92 AIHVGAAYPRYPE------IFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        92 ~I~i~~~~~~~p~------~l~~~LkpgG~lvi~~~~~  123 (165)
                      ++|.+++++.+|+      .+..+|+|||.|.+-+.+.
T Consensus        95 llfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN  132 (257)
T COG4106          95 LLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN  132 (257)
T ss_pred             hhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence            9999999998886      5789999999999987643

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.34  E-value=2e-11  Score=95.02  Aligned_cols=107  Identities=17%  Similarity=0.133  Sum_probs=82.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCC
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFG   85 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~   85 (165)
                      ....++..+. ..++.+|||+ ||+|.++..+++..   .+|+++|+++++++.++  +...+. .+++++.+|......
T Consensus        39 ~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  117 (239)
T PRK00216         39 WRRKTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF  117 (239)
T ss_pred             HHHHHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC
Confidence            3445566664 3578999999 99999999998876   68999999999999996  333223 469999999876443


Q ss_pred             CCCCccEEEEcCCCCCch------HHHHhccccCcEEEEEe
Q psy8015          86 DNGPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        86 ~~~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~  120 (165)
                      +.++||+|++....++.+      +.+.+.|+|||++++..
T Consensus       118 ~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~  158 (239)
T PRK00216        118 PDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILE  158 (239)
T ss_pred             CCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEE
Confidence            457899999987666443      36789999999998754

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.34  E-value=1.1e-11  Score=104.34  Aligned_cols=102  Identities=12%  Similarity=0.033  Sum_probs=78.4

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDA   92 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~   92 (165)
                      ..+++.+. ++++++|||| ||+|.++..+++.. .+|+++|+|+++++.|+.+..+. ++++..+|....   .++||.
T Consensus       157 ~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l-~v~~~~~D~~~l---~~~fD~  231 (383)
T PRK11705        157 DLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL-PVEIRLQDYRDL---NGQFDR  231 (383)
T ss_pred             HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC-eEEEEECchhhc---CCCCCE
Confidence            34445543 4789999999 99999999999764 58999999999999997332233 588888987542   368999


Q ss_pred             EEEcCCCCCch--------HHHHhccccCcEEEEEec
Q psy8015          93 IHVGAAYPRYP--------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        93 I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~~  121 (165)
                      |++....++++        +.+.+.|||||++++...
T Consensus       232 Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i  268 (383)
T PRK11705        232 IVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI  268 (383)
T ss_pred             EEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            99877665542        357889999999998653

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.34  E-value=1.4e-11  Score=96.95  Aligned_cols=108  Identities=19%  Similarity=0.149  Sum_probs=82.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCC
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDN   87 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~   87 (165)
                      ....++..+.  ..+.+|||+ ||+|.++..+++..  .+|+++|+++++++.|+  .+..+.+|++++.+|..+.++ .
T Consensus        76 l~~~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~  152 (251)
T TIGR03534        76 LVEAALERLK--KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP-G  152 (251)
T ss_pred             HHHHHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc-C
Confidence            3444455542  345699999 99999999999874  48999999999999996  555677789999999876443 4


Q ss_pred             CCccEEEEcCCCCC--------------------------------chHHHHhccccCcEEEEEecCC
Q psy8015          88 GPYDAIHVGAAYPR--------------------------------YPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        88 ~~fD~I~i~~~~~~--------------------------------~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      ++||+|+++.....                                +.+.+.+.|+|||++++..+..
T Consensus       153 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~  220 (251)
T TIGR03534       153 GKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYD  220 (251)
T ss_pred             CceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECcc
Confidence            78999998643221                                1134568999999999988653

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR00740 methyltransferase, putative

Probab=99.34  E-value=1.4e-11  Score=97.02  Aligned_cols=94  Identities=13%  Similarity=-0.009  Sum_probs=75.5

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC----CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCCCCccEEEEc
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI----PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDNGPYDAIHVG   96 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~----~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~~~fD~I~i~   96 (165)
                      .++.+|||+ ||+|..+..+++..    .+|+++|++++|++.|+  ++..+. .+++++++|.....  ...+|+|++.
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~d~v~~~  129 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--IKNASMVILN  129 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--CCCCCEEeee
Confidence            578899999 99999999888753    47999999999999996  444443 47999999986532  2368999998


Q ss_pred             CCCCCch--------HHHHhccccCcEEEEEe
Q psy8015          97 AAYPRYP--------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        97 ~~~~~~p--------~~l~~~LkpgG~lvi~~  120 (165)
                      ...++++        +++.+.|+|||++++..
T Consensus       130 ~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d  161 (239)
T TIGR00740       130 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  161 (239)
T ss_pred             cchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence            8877664        35789999999999864

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.33  E-value=1.2e-11  Score=100.08  Aligned_cols=109  Identities=19%  Similarity=0.126  Sum_probs=79.7

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCCCC
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFGDN   87 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~~~   87 (165)
                      +...++.+....+..+|||+ ||+|.++..++...  .+|+++|+|+++++.|+  .+.++..+ ++++.+|..+.++. 
T Consensus       102 v~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~-  180 (284)
T TIGR00536       102 VEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG-  180 (284)
T ss_pred             HHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC-
Confidence            33444443222333799999 99999999999875  48999999999999996  55566654 99999998765532 


Q ss_pred             CCccEEEEcCCCC-------------Cch------------------HHHHhccccCcEEEEEecCC
Q psy8015          88 GPYDAIHVGAAYP-------------RYP------------------EIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        88 ~~fD~I~i~~~~~-------------~~p------------------~~l~~~LkpgG~lvi~~~~~  123 (165)
                      .+||+|+++...-             +-|                  +...+.|+|||.+++-++..
T Consensus       181 ~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~  247 (284)
T TIGR00536       181 QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW  247 (284)
T ss_pred             CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence            3799999974221             111                  23457999999999988753

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.32  E-value=1.9e-11  Score=94.74  Aligned_cols=87  Identities=9%  Similarity=0.035  Sum_probs=67.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCC
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGP   89 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~   89 (165)
                      ..+.+.+.+....++.+|||+ ||+|+.+..|++.  ..+|+++|+|++|++.|+.+   ..++++.++|+.+. .+.++
T Consensus        30 ~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~---~~~~~~~~~d~~~~-~~~~s  105 (204)
T TIGR03587        30 KLAMFARALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY---LPNINIIQGSLFDP-FKDNF  105 (204)
T ss_pred             HHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh---CCCCcEEEeeccCC-CCCCC
Confidence            344444444444678899999 9999999999886  36899999999999999732   24678899998773 34578


Q ss_pred             ccEEEEcCCCCCch
Q psy8015          90 YDAIHVGAAYPRYP  103 (165)
Q Consensus        90 fD~I~i~~~~~~~p  103 (165)
                      ||+|++.+...+++
T Consensus       106 fD~V~~~~vL~hl~  119 (204)
T TIGR03587       106 FDLVLTKGVLIHIN  119 (204)
T ss_pred             EEEEEECChhhhCC
Confidence            99999999887664

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.32  E-value=2e-11  Score=91.59  Aligned_cols=105  Identities=10%  Similarity=-0.065  Sum_probs=76.0

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDA   92 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~   92 (165)
                      ..++++.+. ..++++|||+ ||+|.+|..+++...+|+++|+|+++++.++.+..+.+|++++++|+.+...+...||.
T Consensus         2 ~~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~   80 (169)
T smart00650        2 IDKIVRAAN-LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYK   80 (169)
T ss_pred             HHHHHHhcC-CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCE
Confidence            356777774 4678999999 99999999999888899999999999999962222346899999999764433456999


Q ss_pred             EEEcCCCCCchH---HHHhc--cccCcEEEEE
Q psy8015          93 IHVGAAYPRYPE---IFIHH--LKSGGRLVIP  119 (165)
Q Consensus        93 I~i~~~~~~~p~---~l~~~--LkpgG~lvi~  119 (165)
                      |+.+..++...+   .+.+.  +.++|.+++-
T Consensus        81 vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q  112 (169)
T smart00650       81 VVGNLPYNISTPILFKLLEEPPAFRDAVLMVQ  112 (169)
T ss_pred             EEECCCcccHHHHHHHHHhcCCCcceEEEEEE
Confidence            998766553222   33322  2355555553

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.32  E-value=2.5e-11  Score=94.95  Aligned_cols=108  Identities=15%  Similarity=0.033  Sum_probs=80.2

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc-cccC-------------CCCCeE
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL-SSTI-------------DPDHDY   74 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~-~~~~-------------~~~nV~   74 (165)
                      ......+.++.+. ..++.+|||+ ||.|..+.+||..+.+|+|+|+++.+++.+. .+.+             ...+|+
T Consensus        22 p~~~L~~~~~~~~-~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~  100 (218)
T PRK13255         22 VNPLLQKYWPALA-LPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEIT  100 (218)
T ss_pred             CCHHHHHHHHhhC-CCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceE
Confidence            4445555555443 2567899999 9999999999999889999999999999763 1111             124699


Q ss_pred             EEEccCCCCCCC-CCCccEEEEcCCCCCch--------HHHHhccccCcEEEE
Q psy8015          75 DLIADGRASFGD-NGPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVI  118 (165)
Q Consensus        75 ~~~gD~~~~~~~-~~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi  118 (165)
                      +.++|..+..+. .+.||.|+-.+...++|        ..+.+.|+|||++++
T Consensus       101 ~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        101 IYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             EEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence            999998764332 35899999777666665        357899999997444

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.32  E-value=2e-11  Score=94.97  Aligned_cols=88  Identities=14%  Similarity=0.023  Sum_probs=69.7

Q ss_pred             HHHHHHHHHhc-CCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCC
Q psy8015          13 AVAKYVTYLSG-HSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDN   87 (165)
Q Consensus        13 ~~~~~l~~l~~-~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~   87 (165)
                      ...++++++.. ..++++|||+ ||+|.++..+++...+|+++|++++|++.|+  +...+. +++++.++|+.+. +  
T Consensus        41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~--  117 (219)
T TIGR02021        41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL-C--  117 (219)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC-C--
Confidence            34567777752 3578999999 9999999999988789999999999999996  333344 4799999998653 2  


Q ss_pred             CCccEEEEcCCCCCch
Q psy8015          88 GPYDAIHVGAAYPRYP  103 (165)
Q Consensus        88 ~~fD~I~i~~~~~~~p  103 (165)
                      ++||+|++.....+++
T Consensus       118 ~~fD~ii~~~~l~~~~  133 (219)
T TIGR02021       118 GEFDIVVCMDVLIHYP  133 (219)
T ss_pred             CCcCEEEEhhHHHhCC
Confidence            6899999877765543

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.31  E-value=2.2e-11  Score=99.76  Aligned_cols=96  Identities=15%  Similarity=0.044  Sum_probs=75.1

Q ss_pred             CCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015          27 RLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGPYDAIHVGAAYP  100 (165)
Q Consensus        27 ~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~fD~I~i~~~~~  100 (165)
                      ..+|||+ ||+|.++..+++..  .+|+++|+|+++++.|+  .+..++. +++++++|..+.++ .++||+|+++...-
T Consensus       134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~-~~~fDlIvsNPPyi  212 (307)
T PRK11805        134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP-GRRYDLIVSNPPYV  212 (307)
T ss_pred             CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC-CCCccEEEECCCCC
Confidence            3799999 99999999999875  48999999999999996  5556664 59999999866554 35799999974321


Q ss_pred             -------------Cc------------------hHHHHhccccCcEEEEEecCC
Q psy8015         101 -------------RY------------------PEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus       101 -------------~~------------------p~~l~~~LkpgG~lvi~~~~~  123 (165)
                                   +-                  ...+.+.|+|||++++-++..
T Consensus       213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~  266 (307)
T PRK11805        213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS  266 (307)
T ss_pred             CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence                         01                  123567999999999987753

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.31  E-value=8.1e-12  Score=97.17  Aligned_cols=92  Identities=13%  Similarity=0.023  Sum_probs=73.9

Q ss_pred             CeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015          28 LDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGPYDAIHVGAAYPR  101 (165)
Q Consensus        28 ~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~  101 (165)
                      ++|||| ||+|..+..+++..  .+|+++|+|+++++.|+  ++..|+. +++++.+|.... +..++||+|++....++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~~~~~fD~I~~~~~l~~   79 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-PFPDTYDLVFGFEVIHH   79 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-CCCCCCCEeehHHHHHh
Confidence            479999 99999999998875  48999999999999996  4555654 699999998554 22358999998776655


Q ss_pred             ch------HHHHhccccCcEEEEEe
Q psy8015         102 YP------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus       102 ~p------~~l~~~LkpgG~lvi~~  120 (165)
                      ++      +.+.+.|||||++++..
T Consensus        80 ~~~~~~~l~~~~~~LkpgG~l~i~~  104 (224)
T smart00828       80 IKDKMDLFSNISRHLKDGGHLVLAD  104 (224)
T ss_pred             CCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            43      46789999999999864

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.30  E-value=2.7e-11  Score=96.60  Aligned_cols=95  Identities=13%  Similarity=0.071  Sum_probs=71.3

Q ss_pred             CCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC--CCCccEEEEcCC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD--NGPYDAIHVGAA   98 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~--~~~fD~I~i~~~   98 (165)
                      +..+|||+ ||+|.++..+++..  .+|+++|+|+++++.|+  ++..   +++++++|..+.++.  .++||.|+++..
T Consensus        86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~---~~~~~~~D~~~~l~~~~~~~fDlVv~NPP  162 (251)
T TIGR03704        86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA---GGTVHEGDLYDALPTALRGRVDILAANAP  162 (251)
T ss_pred             CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc---CCEEEEeechhhcchhcCCCEeEEEECCC
Confidence            34689999 99999999998765  38999999999999996  3332   358899998654432  257999999864


Q ss_pred             CC------Cc--------------------------hHHHHhccccCcEEEEEecCC
Q psy8015          99 YP------RY--------------------------PEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        99 ~~------~~--------------------------p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      +.      .+                          .+...+.|+|||++++..+..
T Consensus       163 y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~  219 (251)
T TIGR03704       163 YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER  219 (251)
T ss_pred             CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence            31      01                          012348999999999988754

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.30  E-value=1.9e-11  Score=102.68  Aligned_cols=107  Identities=12%  Similarity=0.098  Sum_probs=84.9

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC--CCCCC
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS--FGDNG   88 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~--~~~~~   88 (165)
                      .+++.+.. ..+..+||| ||+|.++..+|+..  ..++|+|+++.+++.|.  ....+++|+.++.+|+...  ..+.+
T Consensus       113 ~~~~~~~~-~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~  191 (390)
T PRK14121        113 NFLDFISK-NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN  191 (390)
T ss_pred             HHHHHhcC-CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence            45555543 457899999 99999999999886  58999999999999984  5667889999999998542  22357


Q ss_pred             CccEEEEcCCCCC------------chHHHHhccccCcEEEEEecCC
Q psy8015          89 PYDAIHVGAAYPR------------YPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        89 ~fD~I~i~~~~~~------------~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      .+|.|++....+.            ..+.+.+.|+|||.+.+.....
T Consensus       192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~  238 (390)
T PRK14121        192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE  238 (390)
T ss_pred             ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence            8999999876652            2346789999999999976543

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.29  E-value=4.8e-12  Score=103.04  Aligned_cols=110  Identities=10%  Similarity=0.058  Sum_probs=76.1

Q ss_pred             EEecCCchH--HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCC-eEEE
Q psy8015           4 VFVSGSVSG--AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDH-DYDL   76 (165)
Q Consensus         4 ~~~~~~~~~--~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~   76 (165)
                      .|++|.=+.  +--++++.+.  .++++|||+ ||||.++...++++ ++|+|+|+||.+++.|+  .+..++.+ +.+.
T Consensus       139 AFGTG~H~TT~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~  216 (295)
T PF06325_consen  139 AFGTGHHPTTRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS  216 (295)
T ss_dssp             SS-SSHCHHHHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES
T ss_pred             cccCCCCHHHHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE
Confidence            377776443  3445666653  688999999 99999999999987 58999999999999996  44445554 4332


Q ss_pred             EccCCCCCCCCCCccEEEEcCCCC---CchHHHHhccccCcEEEEE
Q psy8015          77 IADGRASFGDNGPYDAIHVGAAYP---RYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        77 ~gD~~~~~~~~~~fD~I~i~~~~~---~~p~~l~~~LkpgG~lvi~  119 (165)
                        .. .... .++||+|+.+-..+   .+.+.+.+.|+|||++++.
T Consensus       217 --~~-~~~~-~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlS  258 (295)
T PF06325_consen  217 --LS-EDLV-EGKFDLVVANILADVLLELAPDIASLLKPGGYLILS  258 (295)
T ss_dssp             --CT-SCTC-CS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEE
T ss_pred             --Ee-cccc-cccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEc
Confidence              21 1222 37899999875543   3345678899999999995

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.28  E-value=6.9e-11  Score=94.53  Aligned_cols=98  Identities=19%  Similarity=0.118  Sum_probs=75.7

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      .++.+|||+ ||+|..+..++...  .+|+++|+++++++.|+  .+.....+++++.+|.....+ .++||+|+++...
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~-~~~fD~Iv~npPy  185 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP-GGRFDLIVSNPPY  185 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC-CCceeEEEECCCc
Confidence            577899999 99999999999876  68999999999999996  332234579999999866543 4689999997433


Q ss_pred             CC------ch--------------------------HHHHhccccCcEEEEEecCC
Q psy8015         100 PR------YP--------------------------EIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus       100 ~~------~p--------------------------~~l~~~LkpgG~lvi~~~~~  123 (165)
                      ..      ++                          +.+.+.|+|||++++.++..
T Consensus       186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~  241 (275)
T PRK09328        186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYD  241 (275)
T ss_pred             CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECch
Confidence            10      11                          12348999999999988653

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.28  E-value=2.7e-11  Score=97.28  Aligned_cols=98  Identities=14%  Similarity=0.124  Sum_probs=74.0

Q ss_pred             CCCeEEEE-ccccH----HHHHHhccC-------CcEEEEeCCHHHHHhcccccC------C------------------
Q psy8015          26 KRLDCLAL-TSNTK----QSTTLPTFI-------PNSFNINVYYYLSGGPLSSTI------D------------------   69 (165)
Q Consensus        26 ~~~~vLei-~GsG~----~t~~la~~~-------~~V~aiD~~~~~~~~A~~~~~------~------------------   69 (165)
                      ++.+|||+ ||||.    +|..++...       .+|+|+|+|++|++.|+....      +                  
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999 99995    555565532       379999999999999972110      1                  


Q ss_pred             -----CCCeEEEEccCCCCCCCCCCccEEEEcCCCCCch--------HHHHhccccCcEEEEEecCC
Q psy8015          70 -----PDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        70 -----~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~~~~  123 (165)
                           .++|+|.++|..+..++.++||+|++.....+++        ..+.+.|+|||.|++-..+.
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~  245 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSES  245 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence                 1369999999987555567899999987776553        35789999999999866543

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.26  E-value=6.5e-11  Score=92.02  Aligned_cols=88  Identities=14%  Similarity=0.047  Sum_probs=68.2

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC--------CCCCCccE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF--------GDNGPYDA   92 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~--------~~~~~fD~   92 (165)
                      +++++|||+ ||+|.++..+++..   ++|+++|+++ |.        ...+++++++|+.+..        ...++||+
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~--------~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~  120 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD--------PIVGVDFLQGDFRDELVLKALLERVGDSKVQV  120 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc--------CCCCcEEEecCCCChHHHHHHHHHhCCCCCCE
Confidence            678999999 99999999998875   5899999998 21        2357999999987631        22468999


Q ss_pred             EEEcCCCCC-----------------chHHHHhccccCcEEEEEec
Q psy8015          93 IHVGAAYPR-----------------YPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        93 I~i~~~~~~-----------------~p~~l~~~LkpgG~lvi~~~  121 (165)
                      |+++.+...                 ..+.+.+.|||||++++-+-
T Consensus       121 V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~  166 (209)
T PRK11188        121 VMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF  166 (209)
T ss_pred             EecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            999765421                 12457899999999999554

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.26  E-value=3.1e-11  Score=97.31  Aligned_cols=104  Identities=13%  Similarity=0.046  Sum_probs=84.1

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCCc
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGPY   90 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~f   90 (165)
                      ..++.| .++||++|||| ||=|.++..+|+.. .+|+++++|++..+.++  +++.|++ ||+++..|-.+. .  ++|
T Consensus        63 ~~~~kl-~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~-~--e~f  138 (283)
T COG2230          63 LILEKL-GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF-E--EPF  138 (283)
T ss_pred             HHHHhc-CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc-c--ccc
Confidence            344444 34899999999 99999999999986 79999999999999996  6778887 899999996543 2  359


Q ss_pred             cEEEEcCCCCCc-----h---HHHHhccccCcEEEEEecCC
Q psy8015          91 DAIHVGAAYPRY-----P---EIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        91 D~I~i~~~~~~~-----p---~~l~~~LkpgG~lvi~~~~~  123 (165)
                      |.|+.-+..+++     +   +.+.+.|+|||+++.-....
T Consensus       139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~  179 (283)
T COG2230         139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG  179 (283)
T ss_pred             ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence            999998877643     3   36789999999999866543

>PRK00811 spermidine synthase; Provisional

Probab=99.26  E-value=2.7e-11  Score=98.17  Aligned_cols=97  Identities=18%  Similarity=0.142  Sum_probs=76.0

Q ss_pred             CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cccC-----CCCCeEEEEccCCCCCC-CCCCccEE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SSTI-----DPDHDYDLIADGRASFG-DNGPYDAI   93 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~~-----~~~nV~~~~gD~~~~~~-~~~~fD~I   93 (165)
                      ...++||+| ||+|..+..+.+.  ..+|+++|+|+++++.|+  +...     .-++++++.+|+.+-+. ..++||+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            467899999 9999999988775  468999999999999997  3322     23579999999876333 24689999


Q ss_pred             EEcCCCCCch----------HHHHhccccCcEEEEEec
Q psy8015          94 HVGAAYPRYP----------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        94 ~i~~~~~~~p----------~~l~~~LkpgG~lvi~~~  121 (165)
                      +++...+.-|          +.+.+.|+|||++++..+
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~  192 (283)
T PRK00811        155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG  192 (283)
T ss_pred             EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence            9987554322          356899999999998654

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.25  E-value=7.7e-11  Score=89.75  Aligned_cols=95  Identities=13%  Similarity=-0.011  Sum_probs=69.2

Q ss_pred             HHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC--------CC
Q psy8015          19 TYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF--------GD   86 (165)
Q Consensus        19 ~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~--------~~   86 (165)
                      +....+.++++|||+ ||+|.++..+++..   ++|+++|+++.+         ...+++++.+|..+..        .+
T Consensus        25 ~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~~~~~d~~~~~~~~~l~~~~~   95 (188)
T TIGR00438        25 QKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVDFIRGDFTDEEVLNKIRERVG   95 (188)
T ss_pred             HHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCceEEEeeCCChhHHHHHHHHhC
Confidence            334444789999999 99999999888764   369999999965         2357889999976421        12


Q ss_pred             CCCccEEEEcCCCC-----C------------chHHHHhccccCcEEEEEecC
Q psy8015          87 NGPYDAIHVGAAYP-----R------------YPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        87 ~~~fD~I~i~~~~~-----~------------~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      .+.||+|+++++.+     .            ....+.+.|+|||++++....
T Consensus        96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~  148 (188)
T TIGR00438        96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ  148 (188)
T ss_pred             CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence            45799999976422     1            123468899999999996543

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.24  E-value=9.1e-11  Score=91.34  Aligned_cols=88  Identities=11%  Similarity=0.041  Sum_probs=68.8

Q ss_pred             HHHHHHHHHhc--CCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCC
Q psy8015          13 AVAKYVTYLSG--HSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGD   86 (165)
Q Consensus        13 ~~~~~l~~l~~--~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~   86 (165)
                      ....+++++..  ..++.+|||+ ||+|+++..+++...+|+++|++++|++.|+  ....+. +++++..+|...   .
T Consensus        48 ~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~  124 (230)
T PRK07580         48 MRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---L  124 (230)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---c
Confidence            34456666643  3578899999 9999999999988888999999999999996  444444 479999999432   2


Q ss_pred             CCCccEEEEcCCCCCch
Q psy8015          87 NGPYDAIHVGAAYPRYP  103 (165)
Q Consensus        87 ~~~fD~I~i~~~~~~~p  103 (165)
                      .++||+|++....++++
T Consensus       125 ~~~fD~v~~~~~l~~~~  141 (230)
T PRK07580        125 LGRFDTVVCLDVLIHYP  141 (230)
T ss_pred             cCCcCEEEEcchhhcCC
Confidence            46899999988876654

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=99.24  E-value=2.3e-12  Score=107.40  Aligned_cols=137  Identities=13%  Similarity=0.039  Sum_probs=87.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC----
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG----   85 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~----   85 (165)
                      ++...++++.. .++ ++||+ ||+|.+|..||+.+++|+|+|.++++++.|+  ++..+++|++|+.+++.+...    
T Consensus       185 l~~~~~~~l~~-~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~  262 (352)
T PF05958_consen  185 LYEQALEWLDL-SKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAK  262 (352)
T ss_dssp             HHHHHHHHCTT--TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCC
T ss_pred             HHHHHHHHhhc-CCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHh
Confidence            34455566542 344 89999 9999999999999999999999999999996  666788999999987643211    


Q ss_pred             ------------CCCCccEEEEcCCCCCchHHHHhcc-ccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEee
Q psy8015          86 ------------DNGPYDAIHVGAAYPRYPEIFIHHL-KSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGL  151 (165)
Q Consensus        86 ------------~~~~fD~I~i~~~~~~~p~~l~~~L-kpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~p  151 (165)
                                  ....+|+|+++....-+.+.+.+.+ ++.=.+++.|++.+. ..+..+.   . +|....+..+++.|
T Consensus       263 ~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~~ivYvSCnP~tlaRDl~~L~---~-~y~~~~v~~~DmFP  338 (352)
T PF05958_consen  263 AREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKKLKRIVYVSCNPATLARDLKILK---E-GYKLEKVQPVDMFP  338 (352)
T ss_dssp             S-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHHSSEEEEEES-HHHHHHHHHHHH---C-CEEEEEEEEE-SST
T ss_pred             hHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhcCCeEEEEECCHHHHHHHHHHHh---h-cCEEEEEEEeecCC
Confidence                        1126899999977665544332222 445677778877653 3444442   2 49999999999999


Q ss_pred             eccC
Q psy8015         152 LYDV  155 (165)
Q Consensus       152 l~~~  155 (165)
                      .+.+
T Consensus       339 ~T~H  342 (352)
T PF05958_consen  339 QTHH  342 (352)
T ss_dssp             TSS-
T ss_pred             CCCc
Confidence            8764

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.24  E-value=5e-11  Score=98.19  Aligned_cols=118  Identities=18%  Similarity=0.105  Sum_probs=97.1

Q ss_pred             EEecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEc-c
Q psy8015           4 VFVSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIA-D   79 (165)
Q Consensus         4 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~g-D   79 (165)
                      +|.++|.+--.||.+--|...++|+.|||- ||||.+...+..++.+|++.|++.+|++-|+  ++..++++..+... |
T Consensus       175 f~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~D  254 (347)
T COG1041         175 FFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLD  254 (347)
T ss_pred             ccCcCCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecc
Confidence            467788888888888888777999999999 9999999999998999999999999999996  77777778777766 9


Q ss_pred             CCCCCCCCCCccEEEEcCCCCC---------------chHHHHhccccCcEEEEEec
Q psy8015          80 GRASFGDNGPYDAIHVGAAYPR---------------YPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        80 ~~~~~~~~~~fD~I~i~~~~~~---------------~p~~l~~~LkpgG~lvi~~~  121 (165)
                      +.+...+...||+|..+.....               ..+.+.+.|++||+++++..
T Consensus       255 a~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         255 ATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             cccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            8774333346999999865431               11357899999999999887

>PRK06922 hypothetical protein; Provisional

Probab=99.23  E-value=5.8e-11  Score=104.92  Aligned_cols=96  Identities=13%  Similarity=0.047  Sum_probs=74.4

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC--CCCCCccEEEEcC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF--GDNGPYDAIHVGA   97 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~--~~~~~fD~I~i~~   97 (165)
                      .++.+|||+ ||+|.++..+++..  .+|+++|+|+.|++.|+  ....+ .+++++++|+.+..  .+.++||+|+++.
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~dLp~~fedeSFDvVVsn~  495 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAINLSSSFEKESVDTIVYSS  495 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchHhCccccCCCCEEEEEEch
Confidence            568999999 99999998888754  59999999999999996  22223 46889999986532  2357899999876


Q ss_pred             CCCCc-------------------hHHHHhccccCcEEEEEec
Q psy8015          98 AYPRY-------------------PEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        98 ~~~~~-------------------p~~l~~~LkpgG~lvi~~~  121 (165)
                      ..+++                   ..++.+.|||||++++..+
T Consensus       496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            55432                   1356899999999999754

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.22  E-value=9.4e-11  Score=96.37  Aligned_cols=89  Identities=11%  Similarity=0.038  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhcC--CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccC-----CCCCeEEEEccCCC
Q psy8015          13 AVAKYVTYLSGH--SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTI-----DPDHDYDLIADGRA   82 (165)
Q Consensus        13 ~~~~~l~~l~~~--~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~-----~~~nV~~~~gD~~~   82 (165)
                      .+.++++++...  .++.+|||+ ||+|.++..+++...+|+++|+|++|++.|+  .+..     +..++++..+|...
T Consensus       129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~  208 (315)
T PLN02585        129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES  208 (315)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh
Confidence            456677777532  267899999 9999999999998889999999999999996  3322     23468899999743


Q ss_pred             CCCCCCCccEEEEcCCCCCchH
Q psy8015          83 SFGDNGPYDAIHVGAAYPRYPE  104 (165)
Q Consensus        83 ~~~~~~~fD~I~i~~~~~~~p~  104 (165)
                      .   .++||+|++.....++|+
T Consensus       209 l---~~~fD~Vv~~~vL~H~p~  227 (315)
T PLN02585        209 L---SGKYDTVTCLDVLIHYPQ  227 (315)
T ss_pred             c---CCCcCEEEEcCEEEecCH
Confidence            2   368999999888777764

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.20  E-value=3.2e-11  Score=102.00  Aligned_cols=104  Identities=9%  Similarity=-0.083  Sum_probs=76.0

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCCC--CCeEEEEccCCCCCC--
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTIDP--DHDYDLIADGRASFG--   85 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~--~nV~~~~gD~~~~~~--   85 (165)
                      ...++..+   .++++|||+ ||||.++..++.. ..+|+++|+|+.+++.|+  ++..++  ++++++++|+.+.+.  
T Consensus       211 ~R~~~~~~---~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~  287 (396)
T PRK15128        211 SRLATRRY---VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTY  287 (396)
T ss_pred             HHHHHHHh---cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHH
Confidence            33444444   468999999 9999998765543 458999999999999996  555565  379999999876432  


Q ss_pred             --CCCCccEEEEcCCCCC-----ch----------HHHHhccccCcEEEEEe
Q psy8015          86 --DNGPYDAIHVGAAYPR-----YP----------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        86 --~~~~fD~I~i~~~~~~-----~p----------~~l~~~LkpgG~lvi~~  120 (165)
                        ..++||.|+++...-.     +.          ....+.|+|||.++...
T Consensus       288 ~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s  339 (396)
T PRK15128        288 RDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS  339 (396)
T ss_pred             HhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence              2358999999865411     11          13468999999999743

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.20  E-value=1.1e-10  Score=89.62  Aligned_cols=103  Identities=15%  Similarity=-0.002  Sum_probs=73.9

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCc
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPY   90 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~f   90 (165)
                      +..+++.+. ..+..++||+ ||.|-.|..||+.+-.|+|+|.|+..++.++  .++.+++ |+....|..+... ...|
T Consensus        19 hs~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~~-~~~y   95 (192)
T PF03848_consen   19 HSEVLEAVP-LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFDF-PEEY   95 (192)
T ss_dssp             -HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS--TTTE
T ss_pred             cHHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhccc-cCCc
Confidence            334555553 3567899999 9999999999999999999999999999875  3444554 9999999755322 3689


Q ss_pred             cEEEEcCCCCCch--------HHHHhccccCcEEEEE
Q psy8015          91 DAIHVGAAYPRYP--------EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        91 D~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~  119 (165)
                      |.|+.......++        +.+.+.++|||..++.
T Consensus        96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~  132 (192)
T PF03848_consen   96 DFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIV  132 (192)
T ss_dssp             EEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence            9999876555433        3567889999998884

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.20  E-value=1.9e-10  Score=97.36  Aligned_cols=98  Identities=13%  Similarity=0.044  Sum_probs=73.9

Q ss_pred             CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC-CCCCCCccEEEEcCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS-FGDNGPYDAIHVGAA   98 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~-~~~~~~fD~I~i~~~   98 (165)
                      .++.+|||+ ||||.++..+++.  ..+|+++|+|+++++.|+  .+..+. +++++++|..+. ++..++||+|+++..
T Consensus       250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l~~~~~FDLIVSNPP  328 (423)
T PRK14966        250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDMPSEGKWDIIVSNPP  328 (423)
T ss_pred             CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccccccCCCccEEEECCC
Confidence            456799999 9999999988865  358999999999999996  444454 799999998653 233458999999764


Q ss_pred             CC-----C-c-------h------------------HHHHhccccCcEEEEEecCC
Q psy8015          99 YP-----R-Y-------P------------------EIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        99 ~~-----~-~-------p------------------~~l~~~LkpgG~lvi~~~~~  123 (165)
                      .-     . .       |                  +.+.+.|+|||.+++.++..
T Consensus       329 YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~  384 (423)
T PRK14966        329 YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD  384 (423)
T ss_pred             CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc
Confidence            31     0 0       1                  12347899999999877653

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.19  E-value=2.5e-10  Score=93.19  Aligned_cols=103  Identities=12%  Similarity=-0.031  Sum_probs=79.0

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCC
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDN   87 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~   87 (165)
                      ...+++.+. .+++.+|||| ||+|.++..+++..  .+++++|. +.+++.|+  .++.|+. +++++.+|..+...  
T Consensus       138 ~~~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~--  213 (306)
T TIGR02716       138 IQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY--  213 (306)
T ss_pred             HHHHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC--
Confidence            344555553 3678999999 99999999999876  47999997 78999885  5556664 59999999875322  


Q ss_pred             CCccEEEEcCCCCCch--------HHHHhccccCcEEEEEe
Q psy8015          88 GPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        88 ~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~  120 (165)
                      ..+|+|++....+..+        .++.+.|+|||++++..
T Consensus       214 ~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d  254 (306)
T TIGR02716       214 PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD  254 (306)
T ss_pred             CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            2479999887666443        35789999999999874

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.19  E-value=1.1e-10  Score=92.54  Aligned_cols=107  Identities=16%  Similarity=0.084  Sum_probs=80.1

Q ss_pred             HHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCC--CCC
Q psy8015          17 YVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFG--DNG   88 (165)
Q Consensus        17 ~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~--~~~   88 (165)
                      ++..........+|||+ ||+|..+..+|+..  .+++++|+++++++.|+  .+..++ ++++++++|..+..+  ...
T Consensus        35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~  114 (248)
T COG4123          35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFA  114 (248)
T ss_pred             HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccc
Confidence            34444334568999999 99999999999885  58999999999999996  444444 469999999865332  235


Q ss_pred             CccEEEEcCCCCCch--------------------H----HHHhccccCcEEEEEecCC
Q psy8015          89 PYDAIHVGAAYPRYP--------------------E----IFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        89 ~fD~I~i~~~~~~~p--------------------~----~l~~~LkpgG~lvi~~~~~  123 (165)
                      +||.|+++..+-...                    +    ...+.|||||++.+++...
T Consensus       115 ~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e  173 (248)
T COG4123         115 SFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE  173 (248)
T ss_pred             ccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH
Confidence            799999986543111                    1    2468999999999997654

>PRK06202 hypothetical protein; Provisional

Probab=99.18  E-value=2e-10  Score=90.17  Aligned_cols=90  Identities=7%  Similarity=-0.031  Sum_probs=64.4

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC------CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI------PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD   86 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~------~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~   86 (165)
                      ....+.......++.+|||+ ||+|.++..|++..      .+|+++|++++|++.|+.+. ...++++..+++......
T Consensus        48 ~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~-~~~~~~~~~~~~~~l~~~  126 (232)
T PRK06202         48 YRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP-RRPGVTFRQAVSDELVAE  126 (232)
T ss_pred             HHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc-ccCCCeEEEEeccccccc
Confidence            33343333233567899999 99999998887642      38999999999999997332 234577777765432223


Q ss_pred             CCCccEEEEcCCCCCchH
Q psy8015          87 NGPYDAIHVGAAYPRYPE  104 (165)
Q Consensus        87 ~~~fD~I~i~~~~~~~p~  104 (165)
                      .++||+|+++...+++++
T Consensus       127 ~~~fD~V~~~~~lhh~~d  144 (232)
T PRK06202        127 GERFDVVTSNHFLHHLDD  144 (232)
T ss_pred             CCCccEEEECCeeecCCh
Confidence            578999999999888764

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.18  E-value=2.6e-10  Score=88.51  Aligned_cols=96  Identities=14%  Similarity=-0.010  Sum_probs=75.4

Q ss_pred             CCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC-CCCccEEEEcCCCCC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD-NGPYDAIHVGAAYPR  101 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~-~~~fD~I~i~~~~~~  101 (165)
                      ++.+|||+ ||+|+++..+++...+|+++|.++++++.++  +...+..++++..+|+.+...+ .++||+|++....++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~  124 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH  124 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence            47899999 9999999999887778999999999999886  3344444789999987653322 368999999866554


Q ss_pred             ch------HHHHhccccCcEEEEEec
Q psy8015         102 YP------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       102 ~p------~~l~~~LkpgG~lvi~~~  121 (165)
                      ..      +.+.+.|+|||.+++...
T Consensus       125 ~~~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       125 VPDPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             CCCHHHHHHHHHHhcCCCcEEEEEec
Confidence            32      456789999999887653

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.18  E-value=6.9e-11  Score=106.37  Aligned_cols=99  Identities=14%  Similarity=0.033  Sum_probs=76.4

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCC--CeEEEEccCCCCCCC-CCCccEEEEcC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPD--HDYDLIADGRASFGD-NGPYDAIHVGA   97 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~--nV~~~~gD~~~~~~~-~~~fD~I~i~~   97 (165)
                      .++++|||+ ||||.++..++... .+|+++|+|+.+++.|+  ++..+++  +++++++|+.+.+.. ..+||+|+++.
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP  616 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP  616 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence            468999999 99999999999864 47999999999999996  5545554  799999998653321 35899999986


Q ss_pred             CCC-------C----------chHHHHhccccCcEEEEEecCC
Q psy8015          98 AYP-------R----------YPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        98 ~~~-------~----------~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      ..-       .          +...+.+.|+|||.+++.....
T Consensus       617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~  659 (702)
T PRK11783        617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR  659 (702)
T ss_pred             CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            431       1          1124578999999998876544

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=2.1e-10  Score=92.94  Aligned_cols=93  Identities=20%  Similarity=0.187  Sum_probs=74.9

Q ss_pred             eEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC-C-C
Q psy8015          29 DCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY-P-R  101 (165)
Q Consensus        29 ~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~-~-~  101 (165)
                      +|||+ ||||..+..++....  +|+++|+|+++++.|+  .+.+|+.|+.++.+|.......  +||.|+++..+ + .
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~--~fDlIVsNPPYip~~  190 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRG--KFDLIVSNPPYIPAE  190 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCC--ceeEEEeCCCCCCCc
Confidence            79999 999999999999886  8999999999999996  6666777788888887766553  89999998543 1 1


Q ss_pred             ----ch-------------------------HHHHhccccCcEEEEEecCC
Q psy8015         102 ----YP-------------------------EIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus       102 ----~p-------------------------~~l~~~LkpgG~lvi~~~~~  123 (165)
                          .|                         +...+.|+|||.+++-++..
T Consensus       191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~  241 (280)
T COG2890         191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT  241 (280)
T ss_pred             ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC
Confidence                11                         02468999999999998843

>KOG1663|consensus

Probab=99.17  E-value=7.2e-11  Score=92.05  Aligned_cols=110  Identities=16%  Similarity=0.145  Sum_probs=88.5

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRA   82 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~   82 (165)
                      ++...+.+++.+...-..+++||| +=|||.+...|...   |+|+++|++++.++.+.  .+..|.. .|++++|++.+
T Consensus        57 v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e  136 (237)
T KOG1663|consen   57 VGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE  136 (237)
T ss_pred             cChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh
Confidence            444556666666555578999999 99999998888765   79999999999999995  5666765 59999999875


Q ss_pred             CCC------CCCCccEEEEcCCCCCc---hHHHHhccccCcEEEEE
Q psy8015          83 SFG------DNGPYDAIHVGAAYPRY---PEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        83 ~~~------~~~~fD~I~i~~~~~~~---p~~l~~~LkpgG~lvi~  119 (165)
                      .++      +.++||.+|+++...++   -+++.++||+||.|++.
T Consensus       137 sLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~D  182 (237)
T KOG1663|consen  137 SLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVD  182 (237)
T ss_pred             hHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEe
Confidence            443      24799999999988754   46889999999999984

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.17  E-value=8.1e-11  Score=92.15  Aligned_cols=100  Identities=15%  Similarity=0.063  Sum_probs=79.0

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCC-cEEEEeCCHHHHHhccccc----CCCCCeEEEEccCCCCCC--CCCCccEEEEc
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPLSST----IDPDHDYDLIADGRASFG--DNGPYDAIHVG   96 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~----~~~~nV~~~~gD~~~~~~--~~~~fD~I~i~   96 (165)
                      +.|.+|||. +|-||.|++..+... +|+++|.||..++.|.++-    +--.+++++.||+.+...  ++.+||+|+-+
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD  212 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD  212 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence            569999999 999999999888776 9999999999999996332    212268999999976332  35789999887


Q ss_pred             CCCC-----Cch----HHHHhccccCcEEEEEecCCC
Q psy8015          97 AAYP-----RYP----EIFIHHLKSGGRLVIPIGDTK  124 (165)
Q Consensus        97 ~~~~-----~~p----~~l~~~LkpgG~lvi~~~~~~  124 (165)
                      ...-     -+.    .++++.|||||+|+=.+++++
T Consensus       213 PPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg  249 (287)
T COG2521         213 PPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG  249 (287)
T ss_pred             CCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence            5431     122    468999999999999998765

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.17  E-value=2.9e-10  Score=89.01  Aligned_cols=96  Identities=9%  Similarity=-0.015  Sum_probs=75.4

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC-CCCCCccEEEEcCCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF-GDNGPYDAIHVGAAYP  100 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~-~~~~~fD~I~i~~~~~  100 (165)
                      .++.+|||+ ||+|.++..+++...+|+++|.++++++.|+  ....+. +++++.+|..... ...++||+|++....+
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~  125 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEHPGQFDVVTCMEMLE  125 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence            578999999 9999999999987778999999999999886  333343 6788888875432 1346899999987666


Q ss_pred             Cch------HHHHhccccCcEEEEEec
Q psy8015         101 RYP------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       101 ~~p------~~l~~~LkpgG~lvi~~~  121 (165)
                      +.+      +.+.+.|+|||++++...
T Consensus       126 ~~~~~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        126 HVPDPASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             ccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence            543      356789999999998653

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.15  E-value=5.4e-10  Score=87.86  Aligned_cols=111  Identities=12%  Similarity=-0.003  Sum_probs=84.5

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccc--------------cCCCCCeE
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSS--------------TIDPDHDY   74 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~--------------~~~~~nV~   74 (165)
                      +.....+....+.. .++.+||.. ||.|+-+.+||..+.+|+++|+|+..++.+..+              ...-.+++
T Consensus        28 pnp~L~~~~~~l~~-~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~  106 (226)
T PRK13256         28 PNEFLVKHFSKLNI-NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE  106 (226)
T ss_pred             CCHHHHHHHHhcCC-CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence            44444445555532 467899999 999999999999999999999999999986311              11124799


Q ss_pred             EEEccCCCCCC---CCCCccEEEEcCCCCCchH--------HHHhccccCcEEEEEec
Q psy8015          75 DLIADGRASFG---DNGPYDAIHVGAAYPRYPE--------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        75 ~~~gD~~~~~~---~~~~fD~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~~  121 (165)
                      +.++|..+.-+   ..++||.|+-.+.+..+|+        .+.+.|+|||++++..-
T Consensus       107 ~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~  164 (226)
T PRK13256        107 IYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM  164 (226)
T ss_pred             EEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence            99999886422   1368999999888877764        47889999999988753

>KOG1271|consensus

Probab=99.14  E-value=3e-10  Score=86.00  Aligned_cols=119  Identities=14%  Similarity=-0.016  Sum_probs=81.1

Q ss_pred             EEEecCCchHHHHHHHHHHhc--C-CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCC-e
Q psy8015           3 IVFVSGSVSGAVAKYVTYLSG--H-SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDH-D   73 (165)
Q Consensus         3 ~~~~~~~~~~~~~~~l~~l~~--~-~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~n-V   73 (165)
                      +.|++.+..+.+..++.....  + +...+|||+ ||.|.+-..|++-.  ++.+++|.++++++.|+  .++.+.+| |
T Consensus        41 vWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I  120 (227)
T KOG1271|consen   41 VWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEI  120 (227)
T ss_pred             eecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcce
Confidence            356655444444433333320  0 234599999 99999999998764  67999999999999996  55667887 9


Q ss_pred             EEEEccCCCCCCCCCCccEEE---------EcCCCC-----CchHHHHhccccCcEEEEEec
Q psy8015          74 YDLIADGRASFGDNGPYDAIH---------VGAAYP-----RYPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        74 ~~~~gD~~~~~~~~~~fD~I~---------i~~~~~-----~~p~~l~~~LkpgG~lvi~~~  121 (165)
                      +|.+.|...+-...++||+|+         +++..+     -+-+.+.+.|+|||+++|.-.
T Consensus       121 ~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC  182 (227)
T KOG1271|consen  121 RFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC  182 (227)
T ss_pred             eEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec
Confidence            999999876432334555554         332221     133567899999999999644

>PLN02366 spermidine synthase

Probab=99.14  E-value=5.9e-10  Score=91.44  Aligned_cols=97  Identities=18%  Similarity=0.168  Sum_probs=75.3

Q ss_pred             CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--ccc----CCCCCeEEEEccCCCCCC--CCCCccEE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SST----IDPDHDYDLIADGRASFG--DNGPYDAI   93 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~----~~~~nV~~~~gD~~~~~~--~~~~fD~I   93 (165)
                      .+.++||+| +|.|..+..+++.  +.+|+.+|+|+++++.||  +..    +.-++++++.+|+..-+.  +.++||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            567999999 9999999999876  368999999999999996  332    223579999999864332  13689999


Q ss_pred             EEcCCCCCch----------HHHHhccccCcEEEEEec
Q psy8015          94 HVGAAYPRYP----------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        94 ~i~~~~~~~p----------~~l~~~LkpgG~lvi~~~  121 (165)
                      +++...+.-|          +.+.+.|+|||+++...+
T Consensus       170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~  207 (308)
T PLN02366        170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE  207 (308)
T ss_pred             EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence            9987665322          357899999999987543

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.13  E-value=3.6e-10  Score=97.36  Aligned_cols=99  Identities=18%  Similarity=0.126  Sum_probs=79.7

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC-CCCCCccEEEEc
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF-GDNGPYDAIHVG   96 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~-~~~~~fD~I~i~   96 (165)
                      .+|+++|||+ +|.|.-|..+|.+.   +.|+|.|+++..++..+  ++++|+.||.+...|+.... ...+.||.|+++
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD  190 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD  190 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence            4799999999 99999999999876   68999999999999885  88899999999999986421 113579999999


Q ss_pred             CCCC------CchH----------------------HHHhccccCcEEEEEecC
Q psy8015          97 AAYP------RYPE----------------------IFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        97 ~~~~------~~p~----------------------~l~~~LkpgG~lvi~~~~  122 (165)
                      +.+.      .-|+                      ...+.|||||+||...-+
T Consensus       191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT  244 (470)
T PRK11933        191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT  244 (470)
T ss_pred             CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence            7664      2222                      246899999999887543

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=99.12  E-value=4.4e-10  Score=92.93  Aligned_cols=113  Identities=14%  Similarity=0.087  Sum_probs=90.8

Q ss_pred             EecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCc-EEEEeCCHHHHHhcc--cccCCCCC-eEEEEcc
Q psy8015           5 FVSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPN-SFNINVYYYLSGGPL--SSTIDPDH-DYDLIAD   79 (165)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~-V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD   79 (165)
                      |=|+.-+...+|+.++.   .+|++|+|. +|.|++|..+|+.... |+|+|+||+.++..+  ++..+..+ |+.++||
T Consensus       170 ~Fsprl~~ER~Rva~~v---~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD  246 (341)
T COG2520         170 YFSPRLSTERARVAELV---KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGD  246 (341)
T ss_pred             EECCCchHHHHHHHhhh---cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEecc
Confidence            44555677788888876   469999999 9999999999998865 999999999999985  55556666 9999999


Q ss_pred             CCCCCCCCCCccEEEEcCCC--CCchHHHHhccccCcEEEEEe
Q psy8015          80 GRASFGDNGPYDAIHVGAAY--PRYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        80 ~~~~~~~~~~fD~I~i~~~~--~~~p~~l~~~LkpgG~lvi~~  120 (165)
                      +....+..+.||.|+++...  +++-+...+.+++||.+-.-.
T Consensus       247 ~rev~~~~~~aDrIim~~p~~a~~fl~~A~~~~k~~g~iHyy~  289 (341)
T COG2520         247 AREVAPELGVADRIIMGLPKSAHEFLPLALELLKDGGIIHYYE  289 (341)
T ss_pred             HHHhhhccccCCEEEeCCCCcchhhHHHHHHHhhcCcEEEEEe
Confidence            98755555889999998654  344455668999999988754

>PRK01581 speE spermidine synthase; Validated

Probab=99.12  E-value=3.4e-10  Score=94.28  Aligned_cols=98  Identities=10%  Similarity=0.027  Sum_probs=75.1

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhccc----c-----cCCCCCeEEEEccCCCCCC-CCCCc
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLS----S-----TIDPDHDYDLIADGRASFG-DNGPY   90 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~----~-----~~~~~nV~~~~gD~~~~~~-~~~~f   90 (165)
                      +...++||++ +|+|+.+..+.+..  .+|+++|+|+++++.|+.    .     .++-++++++.+|+.+-+. ..+.|
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y  227 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY  227 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence            3566899999 99999988887753  699999999999999972    1     1234579999999976332 24689


Q ss_pred             cEEEEcCCCCCc-----------hHHHHhccccCcEEEEEec
Q psy8015          91 DAIHVGAAYPRY-----------PEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        91 D~I~i~~~~~~~-----------p~~l~~~LkpgG~lvi~~~  121 (165)
                      |+|+++...+.-           -+.+.+.|+|||++++..+
T Consensus       228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~  269 (374)
T PRK01581        228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN  269 (374)
T ss_pred             cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence            999999654421           1357899999999988654

>TIGR03438 probable methyltransferase

Probab=99.11  E-value=8.5e-10  Score=90.11  Aligned_cols=97  Identities=11%  Similarity=0.074  Sum_probs=68.9

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCC-CCCeEEEEccCCCCCCCCCC-----ccE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTID-PDHDYDLIADGRASFGDNGP-----YDA   92 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~-~~nV~~~~gD~~~~~~~~~~-----fD~   92 (165)
                      .++.+|||+ ||||..|..|++..   .+|+++|+|++|++.|+  ++... ..++.++++|..+..+....     ..+
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~  141 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG  141 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence            467899999 99999999888764   68999999999999985  33211 12477889998654321122     234


Q ss_pred             EEEcCCCCCch--------HHHHhccccCcEEEEEec
Q psy8015          93 IHVGAAYPRYP--------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        93 I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~~  121 (165)
                      ++++....+++        ..+.+.|+|||++++.+.
T Consensus       142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d  178 (301)
T TIGR03438       142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD  178 (301)
T ss_pred             EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence            44445555543        246899999999998664

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.10  E-value=5.3e-10  Score=90.79  Aligned_cols=105  Identities=14%  Similarity=0.082  Sum_probs=79.0

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc-c-ccCCCCCeEEEEccCCCCCCCCCC
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL-S-STIDPDHDYDLIADGRASFGDNGP   89 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~-~-~~~~~~nV~~~~gD~~~~~~~~~~   89 (165)
                      +.++...+.. -.|++|||| ||+||.+-.|+... ..|+++|.++...-+.+ + +-+|.++..+....+.+.++..+.
T Consensus       104 W~rl~p~l~~-L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~  182 (315)
T PF08003_consen  104 WDRLLPHLPD-LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGA  182 (315)
T ss_pred             HHHHHhhhCC-cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCC
Confidence            4567777754 479999999 99999998888776 57999999999887765 2 233444444444445555555789


Q ss_pred             ccEEEEcCCCCCch------HHHHhccccCcEEEEE
Q psy8015          90 YDAIHVGAAYPRYP------EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        90 fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~  119 (165)
                      ||.||+-+.+-|..      ..+.+.|+|||.||+-
T Consensus       183 FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLE  218 (315)
T PF08003_consen  183 FDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLE  218 (315)
T ss_pred             cCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEE
Confidence            99999999876543      3678899999999974

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK03612 spermidine synthase; Provisional

Probab=99.09  E-value=6.1e-10  Score=97.25  Aligned_cols=98  Identities=13%  Similarity=0.121  Sum_probs=75.5

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhccc----cc-----CCCCCeEEEEccCCCCCC-CCCCc
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLS----ST-----IDPDHDYDLIADGRASFG-DNGPY   90 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~----~~-----~~~~nV~~~~gD~~~~~~-~~~~f   90 (165)
                      +.+.++|||| ||+|..+..+.+..  .+|+.+|+|+++++.||.    ..     ++-++++++.+|+.+-+. ..++|
T Consensus       295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f  374 (521)
T PRK03612        295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF  374 (521)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence            3567899999 99999998888753  699999999999999963    11     223579999999876332 23689


Q ss_pred             cEEEEcCCCCCch-----------HHHHhccccCcEEEEEec
Q psy8015          91 DAIHVGAAYPRYP-----------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        91 D~I~i~~~~~~~p-----------~~l~~~LkpgG~lvi~~~  121 (165)
                      |+|+++...+..+           +.+.+.|||||++++...
T Consensus       375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~  416 (521)
T PRK03612        375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST  416 (521)
T ss_pred             CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence            9999986654322           356899999999998653

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.08  E-value=7.3e-10  Score=90.35  Aligned_cols=97  Identities=9%  Similarity=0.001  Sum_probs=73.8

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCC-CCCeEEEEccCCCCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTID-PDHDYDLIADGRASFGD   86 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~-~~nV~~~~gD~~~~~~~   86 (165)
                      +....++++.+. ..++++|||| ||+|.+|..+++.+.+|+++|+|++|++.++  ++..+ .+|++++++|+....  
T Consensus        22 ~~i~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~--   98 (294)
T PTZ00338         22 PLVLDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE--   98 (294)
T ss_pred             HHHHHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc--
Confidence            456777888774 4789999999 9999999999998899999999999999996  44444 468999999997632  


Q ss_pred             CCCccEEEEcCCCCCchHHHHhcc
Q psy8015          87 NGPYDAIHVGAAYPRYPEIFIHHL  110 (165)
Q Consensus        87 ~~~fD~I~i~~~~~~~p~~l~~~L  110 (165)
                      ...||.|+.+..+.--.+.+++.|
T Consensus        99 ~~~~d~VvaNlPY~Istpil~~ll  122 (294)
T PTZ00338         99 FPYFDVCVANVPYQISSPLVFKLL  122 (294)
T ss_pred             ccccCEEEecCCcccCcHHHHHHH
Confidence            246898887654432223344444

>TIGR00417 speE spermidine synthase

Probab=99.08  E-value=5e-10  Score=90.10  Aligned_cols=97  Identities=15%  Similarity=0.162  Sum_probs=73.2

Q ss_pred             CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cccC----CCCCeEEEEccCCCCCCC-CCCccEEE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SSTI----DPDHDYDLIADGRASFGD-NGPYDAIH   94 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~~----~~~nV~~~~gD~~~~~~~-~~~fD~I~   94 (165)
                      ...++|||| ||+|.++..+.+.  ..+|+++|+++++++.|+  +...    ..++++++.+|+.+.+.. .++||+|+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence            455699999 9999999877665  468999999999999996  3222    235689999998653322 36899999


Q ss_pred             EcCCCCCch----------HHHHhccccCcEEEEEec
Q psy8015          95 VGAAYPRYP----------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        95 i~~~~~~~p----------~~l~~~LkpgG~lvi~~~  121 (165)
                      ++...+.-+          +.+.+.|+|||++++...
T Consensus       151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~  187 (270)
T TIGR00417       151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE  187 (270)
T ss_pred             EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence            987643221          357899999999998744

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.08  E-value=1.9e-10  Score=88.89  Aligned_cols=107  Identities=11%  Similarity=0.100  Sum_probs=71.8

Q ss_pred             EecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhc--cCCcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEc
Q psy8015           5 FVSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPT--FIPNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIA   78 (165)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~--~~~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~g   78 (165)
                      |++ ..+....|+.+..   .++++|+|. ||.|+++..+|+  ...+|+|+|++|+.++..+  .+..++++ ++.+++
T Consensus        84 fs~-rl~~Er~Ri~~~v---~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~  159 (200)
T PF02475_consen   84 FSP-RLSTERRRIANLV---KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVING  159 (200)
T ss_dssp             --G-GGHHHHHHHHTC-----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES
T ss_pred             Ecc-ccHHHHHHHHhcC---CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcC
Confidence            444 3455556666553   689999999 999999999998  5578999999999999885  44445554 899999


Q ss_pred             cCCCCCCCCCCccEEEEcCCCC--CchHHHHhccccCcEE
Q psy8015          79 DGRASFGDNGPYDAIHVGAAYP--RYPEIFIHHLKSGGRL  116 (165)
Q Consensus        79 D~~~~~~~~~~fD~I~i~~~~~--~~p~~l~~~LkpgG~l  116 (165)
                      |+.+..+ ...||.|+++....  +..+.....+++||.+
T Consensus       160 D~~~~~~-~~~~drvim~lp~~~~~fl~~~~~~~~~~g~i  198 (200)
T PF02475_consen  160 DAREFLP-EGKFDRVIMNLPESSLEFLDAALSLLKEGGII  198 (200)
T ss_dssp             -GGG----TT-EEEEEE--TSSGGGGHHHHHHHEEEEEEE
T ss_pred             CHHHhcC-ccccCEEEECChHHHHHHHHHHHHHhcCCcEE
Confidence            9976554 67899999976543  4556677899999876

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.07  E-value=7.6e-10  Score=73.53  Aligned_cols=91  Identities=16%  Similarity=0.088  Sum_probs=72.2

Q ss_pred             eEEEE-ccccHHHHHHhc-cCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC-CCCCccEEEEcCCCCC--
Q psy8015          29 DCLAL-TSNTKQSTTLPT-FIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG-DNGPYDAIHVGAAYPR--  101 (165)
Q Consensus        29 ~vLei-~GsG~~t~~la~-~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~-~~~~fD~I~i~~~~~~--  101 (165)
                      +++|+ ||+|..+..+++ ...+++++|.++++++.++  .+..+..+++++.+|..+... ...+||+|+++...+.  
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~   80 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV   80 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence            58999 999999999987 4579999999999999886  233345679999999876443 4568999999887754  


Q ss_pred             -c----hHHHHhccccCcEEEEE
Q psy8015         102 -Y----PEIFIHHLKSGGRLVIP  119 (165)
Q Consensus       102 -~----p~~l~~~LkpgG~lvi~  119 (165)
                       .    .+.+.+.|+|||++++.
T Consensus        81 ~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          81 EDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             hHHHHHHHHHHHHcCCCCEEEEE
Confidence             2    23567899999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.07  E-value=5e-10  Score=94.32  Aligned_cols=97  Identities=11%  Similarity=0.066  Sum_probs=75.7

Q ss_pred             CCCeEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP  100 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~  100 (165)
                      ++.+|||+ ||+|..+..++...+  +|+++|+++++++.++  ++..+++++++.++|+...+.....||+|+++.--.
T Consensus        57 ~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~Gs  136 (382)
T PRK04338         57 PRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPFGS  136 (382)
T ss_pred             CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCCCC
Confidence            45799999 999999999987654  8999999999999996  555677788999999865443235799999985311


Q ss_pred             --CchHHHHhccccCcEEEEEecC
Q psy8015         101 --RYPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus       101 --~~p~~l~~~LkpgG~lvi~~~~  122 (165)
                        .+.+...+.+++||.+++...+
T Consensus       137 ~~~~l~~al~~~~~~gilyvSAtD  160 (382)
T PRK04338        137 PAPFLDSAIRSVKRGGLLCVTATD  160 (382)
T ss_pred             cHHHHHHHHHHhcCCCEEEEEecC
Confidence              2234546779999999998543

>TIGR00755 ksgA dimethyladenosine transferase

Probab=99.07  E-value=1.6e-09  Score=86.38  Aligned_cols=102  Identities=11%  Similarity=-0.069  Sum_probs=72.4

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGP   89 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~   89 (165)
                      +....++++.+. ..++++|||+ ||+|.+|..+++.+.+|+++|+|+++++.++.+....+|++++++|+.+...+  .
T Consensus        15 ~~i~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~   91 (253)
T TIGR00755        15 ESVIQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--D   91 (253)
T ss_pred             HHHHHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--H
Confidence            345677888774 4788999999 99999999999999999999999999999862211246899999998764322  4


Q ss_pred             cc---EEEEcCCCCCchHHHHhcc-ccCcE
Q psy8015          90 YD---AIHVGAAYPRYPEIFIHHL-KSGGR  115 (165)
Q Consensus        90 fD---~I~i~~~~~~~p~~l~~~L-kpgG~  115 (165)
                      ||   .|+.+-..+.-.+-+.++| .++..
T Consensus        92 ~d~~~~vvsNlPy~i~~~il~~ll~~~~~~  121 (253)
T TIGR00755        92 FPKQLKVVSNLPYNISSPLIFKLLEKPKFR  121 (253)
T ss_pred             cCCcceEEEcCChhhHHHHHHHHhccCCCc
Confidence            66   5555443332223344555 45544

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.06  E-value=9.8e-10  Score=95.65  Aligned_cols=96  Identities=18%  Similarity=0.151  Sum_probs=73.0

Q ss_pred             CCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      ++.+|||+ ||||.++..++...  .+|+++|+|+++++.|+  .+..++. +++++.+|..+..+ .++||+|+++...
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~-~~~fDlIvsNPPY  216 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE-KQKFDFIVSNPPY  216 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc-CCCccEEEECCCC
Confidence            35689999 99999999888653  58999999999999996  4555654 69999999865443 3589999997532


Q ss_pred             C--------------Cch------------------HHHHhccccCcEEEEEecC
Q psy8015         100 P--------------RYP------------------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus       100 ~--------------~~p------------------~~l~~~LkpgG~lvi~~~~  122 (165)
                      -              +-|                  +.+.+.|+|||++++.++.
T Consensus       217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~  271 (506)
T PRK01544        217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF  271 (506)
T ss_pred             CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC
Confidence            1              001                  1245799999999997764

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.05  E-value=1.2e-09  Score=83.48  Aligned_cols=99  Identities=9%  Similarity=0.071  Sum_probs=74.0

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC--CCCCc
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG--DNGPY   90 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~--~~~~f   90 (165)
                      +.+.+.+   .++.+|||+ ||+|.++..+++.. ..++++|+++++++.|+.     .+++++.+|+.+.++  +.++|
T Consensus         5 ~~i~~~i---~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~-----~~~~~~~~d~~~~l~~~~~~sf   76 (194)
T TIGR02081         5 ESILNLI---PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA-----RGVNVIQGDLDEGLEAFPDKSF   76 (194)
T ss_pred             HHHHHhc---CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH-----cCCeEEEEEhhhcccccCCCCc
Confidence            3444444   467899999 99999999887643 478999999999998853     257888999865332  34689


Q ss_pred             cEEEEcCCCCCchH---HHHhccccCcEEEEEec
Q psy8015          91 DAIHVGAAYPRYPE---IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        91 D~I~i~~~~~~~p~---~l~~~LkpgG~lvi~~~  121 (165)
                      |+|++....+++++   .+.+.++++|..++.++
T Consensus        77 D~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~p  110 (194)
T TIGR02081        77 DYVILSQTLQATRNPEEILDEMLRVGRHAIVSFP  110 (194)
T ss_pred             CEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEcC
Confidence            99999988877643   35567778887777654

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.03  E-value=3.5e-09  Score=84.67  Aligned_cols=86  Identities=12%  Similarity=0.076  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCc
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPY   90 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~f   90 (165)
                      ....++++.+. ..++++|||| ||+|.+|..+++...+|+++|+|++|++.++.+....+|++++++|+.+..  ...|
T Consensus        16 ~~~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~--~~~~   92 (258)
T PRK14896         16 RVVDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD--LPEF   92 (258)
T ss_pred             HHHHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC--chhc
Confidence            45567777664 4788999999 999999999999988999999999999999622112568999999997632  2358


Q ss_pred             cEEEEcCCCC
Q psy8015          91 DAIHVGAAYP  100 (165)
Q Consensus        91 D~I~i~~~~~  100 (165)
                      |.|+.+....
T Consensus        93 d~Vv~NlPy~  102 (258)
T PRK14896         93 NKVVSNLPYQ  102 (258)
T ss_pred             eEEEEcCCcc
Confidence            9888865554

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.03  E-value=2.6e-09  Score=81.82  Aligned_cols=107  Identities=6%  Similarity=-0.085  Sum_probs=76.5

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCC---CC
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFG---DN   87 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~---~~   87 (165)
                      .+..++...-++.+|||+ ||||.++..++..+ .+|+++|.++++++.++  ++..+.. +++++.+|+...+.   ..
T Consensus        39 a~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~  118 (189)
T TIGR00095        39 LFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKK  118 (189)
T ss_pred             HHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhcc
Confidence            344444322468999999 99999999998765 58999999999999985  5556664 69999999854221   12


Q ss_pred             -CCccEEEEcCCCCC-chHH----H--HhccccCcEEEEEecC
Q psy8015          88 -GPYDAIHVGAAYPR-YPEI----F--IHHLKSGGRLVIPIGD  122 (165)
Q Consensus        88 -~~fD~I~i~~~~~~-~p~~----l--~~~LkpgG~lvi~~~~  122 (165)
                       ..||+||.+..... ..+.    +  ..+|+++|.+|+-...
T Consensus       119 ~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       119 PTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             CCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence             24899999877642 2222    2  2468888988876543

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>KOG1541|consensus

Probab=99.01  E-value=2.5e-09  Score=83.25  Aligned_cols=110  Identities=12%  Similarity=0.113  Sum_probs=84.0

Q ss_pred             chHHHHHHHHHHhcCCC--CCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC
Q psy8015          10 VSGAVAKYVTYLSGHSK--RLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD   86 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~--~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~   86 (165)
                      |-.+.++-+++|.. ..  ..-+||| ||||-.+..|..-.+..+++|+|+.|++.|..++..   -.++.+|--+++|.
T Consensus        33 Q~em~eRaLELLal-p~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e---gdlil~DMG~Glpf  108 (270)
T KOG1541|consen   33 QAEMAERALELLAL-PGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE---GDLILCDMGEGLPF  108 (270)
T ss_pred             hHHHHHHHHHHhhC-CCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh---cCeeeeecCCCCCC
Confidence            45567788888864 33  5679999 999999999998888999999999999999643222   35778887676653


Q ss_pred             -CCCccEEEEcCCCC---------CchH--------HHHhccccCcEEEEEecCC
Q psy8015          87 -NGPYDAIHVGAAYP---------RYPE--------IFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        87 -~~~fD~I~i~~~~~---------~~p~--------~l~~~LkpgG~lvi~~~~~  123 (165)
                       .++||.+++-.+..         +.|.        .+...|++|+|.|+-.-+.
T Consensus       109 rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe  163 (270)
T KOG1541|consen  109 RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE  163 (270)
T ss_pred             CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence             58999998865553         3343        3678999999999876443

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=3.7e-09  Score=88.34  Aligned_cols=112  Identities=16%  Similarity=0.152  Sum_probs=85.9

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC----cEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP----NSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRA   82 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~----~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~   82 (165)
                      +++..+.+...+...+||++|||. ++.|.=|+++|.+..    .|+|+|+++..++..+  ++++|..|+.+++.|+..
T Consensus       140 vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~  219 (355)
T COG0144         140 VQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARR  219 (355)
T ss_pred             EcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccc
Confidence            334444455555556899999999 999999999999874    3799999999999875  889999999999988753


Q ss_pred             ---CCCCCCCccEEEEcCCCCC---c---hH----------------------HHHhccccCcEEEEEec
Q psy8015          83 ---SFGDNGPYDAIHVGAAYPR---Y---PE----------------------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        83 ---~~~~~~~fD~I~i~~~~~~---~---p~----------------------~l~~~LkpgG~lvi~~~  121 (165)
                         .++..++||.|++++.+.-   +   |+                      ...+.|||||+||...-
T Consensus       220 ~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC  289 (355)
T COG0144         220 LAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC  289 (355)
T ss_pred             ccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence               2233346999999976641   1   21                      24689999999999754

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.00  E-value=2.1e-10  Score=87.51  Aligned_cols=114  Identities=11%  Similarity=0.053  Sum_probs=79.3

Q ss_pred             chHHHHHHHHHHhcC-CCCCeEEEE-ccccHHHHH-HhccCCcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCC
Q psy8015          10 VSGAVAKYVTYLSGH-SKRLDCLAL-TSNTKQSTT-LPTFIPNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRAS   83 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~-~~~~~vLei-~GsG~~t~~-la~~~~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~   83 (165)
                      -+..-..+..+|... -++.+|||+ +|||.++.+ |++-+.+|+.+|.|++.++..+  ++.++..+ ++++.+|+...
T Consensus        25 ~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~  104 (183)
T PF03602_consen   25 TDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKF  104 (183)
T ss_dssp             SHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHH
T ss_pred             cHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHH
Confidence            345556677777543 379999999 999999974 5566789999999999999885  67777765 99999997543


Q ss_pred             CC----CCCCccEEEEcCCCCCc---hH---HHH--hccccCcEEEEEecCC
Q psy8015          84 FG----DNGPYDAIHVGAAYPRY---PE---IFI--HHLKSGGRLVIPIGDT  123 (165)
Q Consensus        84 ~~----~~~~fD~I~i~~~~~~~---p~---~l~--~~LkpgG~lvi~~~~~  123 (165)
                      +.    ...+||+||++..+..-   ++   .+.  .+|+++|.+++-+...
T Consensus       105 l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  105 LLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             HHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             HHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            31    24789999999887633   22   233  6889999999987544

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.00  E-value=2.4e-09  Score=86.24  Aligned_cols=85  Identities=8%  Similarity=-0.100  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCc
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPY   90 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~f   90 (165)
                      ....++++++. ..++++|||| ||+|.+|..+++.+.+|+++|+|++|++.++.+..+ +|++++++|+.+...+.-.+
T Consensus        29 ~i~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~-~~v~~i~~D~~~~~~~~~~~  106 (272)
T PRK00274         29 NILDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE-DNLTIIEGDALKVDLSELQP  106 (272)
T ss_pred             HHHHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc-CceEEEEChhhcCCHHHcCc
Confidence            45667778774 4788999999 999999999999888999999999999999632112 68999999987642221114


Q ss_pred             cEEEEcCC
Q psy8015          91 DAIHVGAA   98 (165)
Q Consensus        91 D~I~i~~~   98 (165)
                      |.|+.+-.
T Consensus       107 ~~vv~NlP  114 (272)
T PRK00274        107 LKVVANLP  114 (272)
T ss_pred             ceEEEeCC
Confidence            77766543

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.99  E-value=2.1e-09  Score=84.11  Aligned_cols=107  Identities=15%  Similarity=0.071  Sum_probs=81.0

Q ss_pred             CCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc----c----cc------CCCCC
Q psy8015           8 GSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL----S----ST------IDPDH   72 (165)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~----~----~~------~~~~n   72 (165)
                      +.++-...++++.+. ..++.+||.. ||.|+-..+||..+.+|+++|+++.+++.|.    .    ..      ....+
T Consensus        20 ~~~~p~L~~~~~~l~-~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~   98 (218)
T PF05724_consen   20 GEPNPALVEYLDSLA-LKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR   98 (218)
T ss_dssp             TTSTHHHHHHHHHHT-TSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred             CCCCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence            445556667777764 3778899999 9999999999999889999999999999872    1    00      12346


Q ss_pred             eEEEEccCCCCCCC-CCCccEEEEcCCCCCchH--------HHHhccccCcE
Q psy8015          73 DYDLIADGRASFGD-NGPYDAIHVGAAYPRYPE--------IFIHHLKSGGR  115 (165)
Q Consensus        73 V~~~~gD~~~~~~~-~~~fD~I~i~~~~~~~p~--------~l~~~LkpgG~  115 (165)
                      |++.++|.++.-+. .++||+|+=.+.+..+|.        .+.++|+|||+
T Consensus        99 i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~  150 (218)
T PF05724_consen   99 ITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGR  150 (218)
T ss_dssp             EEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEE
T ss_pred             eEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCc
Confidence            89999998874333 358999998888876663        57899999999

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.98  E-value=1.6e-09  Score=82.72  Aligned_cols=99  Identities=9%  Similarity=0.150  Sum_probs=77.0

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC--CCCCcc
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG--DNGPYD   91 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~--~~~~fD   91 (165)
                      .+.+|.   +|+.||||+ ||.|.+-..|.+.- -+.+++|++++.+..+..+     .+.++++|..+++.  ++++||
T Consensus         6 ~I~~~I---~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----Gv~Viq~Dld~gL~~f~d~sFD   77 (193)
T PF07021_consen    6 IIAEWI---EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-----GVSVIQGDLDEGLADFPDQSFD   77 (193)
T ss_pred             HHHHHc---CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-----CCCEEECCHHHhHhhCCCCCcc
Confidence            344543   689999999 99999888887743 4789999999988766432     36789999987653  468999


Q ss_pred             EEEEcCCCCCc--hH-HHHhccccCcEEEEEecC
Q psy8015          92 AIHVGAAYPRY--PE-IFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        92 ~I~i~~~~~~~--p~-~l~~~LkpgG~lvi~~~~  122 (165)
                      .|+++.+...+  |+ -+.+.|+-|.+.++.+++
T Consensus        78 ~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPN  111 (193)
T PF07021_consen   78 YVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPN  111 (193)
T ss_pred             EEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecC
Confidence            99999988754  44 356788999999988764

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>KOG2915|consensus

Probab=98.93  E-value=7.4e-09  Score=82.74  Aligned_cols=104  Identities=17%  Similarity=0.083  Sum_probs=82.8

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCC-CCC
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRA-SFG   85 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~-~~~   85 (165)
                      .+.++..|. +.||.+|+|- ||||.++-.+++.+   |++++.|..+..++.|+  +++.++ +||++++-|... ++.
T Consensus        94 ia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~  172 (314)
T KOG2915|consen   94 IAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL  172 (314)
T ss_pred             HHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence            456666664 6999999999 99999999999987   89999999999999996  777886 589999999865 444


Q ss_pred             C-CCCccEEEEcCCCCC--chHHHHhccccCc-EEEEE
Q psy8015          86 D-NGPYDAIHVGAAYPR--YPEIFIHHLKSGG-RLVIP  119 (165)
Q Consensus        86 ~-~~~fD~I~i~~~~~~--~p~~l~~~LkpgG-~lvi~  119 (165)
                      . ...+|+||++-.-|+  +|-. .+.||.+| +++..
T Consensus       173 ~ks~~aDaVFLDlPaPw~AiPha-~~~lk~~g~r~csF  209 (314)
T KOG2915|consen  173 IKSLKADAVFLDLPAPWEAIPHA-AKILKDEGGRLCSF  209 (314)
T ss_pred             ccccccceEEEcCCChhhhhhhh-HHHhhhcCceEEec
Confidence            3 578999999876553  4444 45788776 55543

>KOG4300|consensus

Probab=98.93  E-value=2.9e-09  Score=82.17  Aligned_cols=95  Identities=16%  Similarity=0.111  Sum_probs=70.1

Q ss_pred             CCCeEEEE-ccccHHHHHHhc-cCCcEEEEeCCHHHHHhcc--cccCCCCCeE-EEEccCCCCC-CCCCCccEEEEcCCC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPT-FIPNSFNINVYYYLSGGPL--SSTIDPDHDY-DLIADGRASF-GDNGPYDAIHVGAAY   99 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~-~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~-~~~gD~~~~~-~~~~~fD~I~i~~~~   99 (165)
                      ....|||| ||||..=..+-. -..+|+.+|.++.|-+.|.  .++....+++ |+++++.+.. .++++||.|+++-..
T Consensus        76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL  155 (252)
T KOG4300|consen   76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL  155 (252)
T ss_pred             CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence            34568999 999965443331 2458999999999999995  4443556787 9999997632 257899999998654


Q ss_pred             CC------chHHHHhccccCcEEEEEe
Q psy8015         100 PR------YPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus       100 ~~------~p~~l~~~LkpgG~lvi~~  120 (165)
                      -.      ...++.+.|||||++++..
T Consensus       156 CSve~~~k~L~e~~rlLRpgG~iifiE  182 (252)
T KOG4300|consen  156 CSVEDPVKQLNEVRRLLRPGGRIIFIE  182 (252)
T ss_pred             eccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            32      2246789999999999875

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.91  E-value=2.2e-08  Score=76.33  Aligned_cols=115  Identities=12%  Similarity=0.074  Sum_probs=86.4

Q ss_pred             CchHHHHHHHHHHhc-CCCCCeEEEE-ccccHHHHHHhc-cCCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCC
Q psy8015           9 SVSGAVAKYVTYLSG-HSKRLDCLAL-TSNTKQSTTLPT-FIPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRA   82 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~-~~~~~~vLei-~GsG~~t~~la~-~~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~   82 (165)
                      +-++.-..+..++.. .-.|.+|||+ +|||.++.+... -+.+|+.+|.|.+..+..+  .+.++. .+++++..|+..
T Consensus        25 T~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~  104 (187)
T COG0742          25 TTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR  104 (187)
T ss_pred             CchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH
Confidence            345566677788865 2579999999 999999976654 5689999999999999985  666774 469999999874


Q ss_pred             CC---CCCCCccEEEEcCCCC-Cch--H-H-----HHhccccCcEEEEEecCC
Q psy8015          83 SF---GDNGPYDAIHVGAAYP-RYP--E-I-----FIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        83 ~~---~~~~~fD~I~i~~~~~-~~p--~-~-----l~~~LkpgG~lvi~~~~~  123 (165)
                      .+   ....+||.||++..++ .+.  + .     -..+|+|+|.+|+-....
T Consensus       105 ~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         105 ALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             HHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            32   2223599999998887 232  1 1     136799999999976643

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.89  E-value=8.8e-09  Score=81.16  Aligned_cols=109  Identities=13%  Similarity=0.051  Sum_probs=73.8

Q ss_pred             chHHHHHHHHHHhcC---CCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhc-cc----ccCCCCCeEEEEcc
Q psy8015          10 VSGAVAKYVTYLSGH---SKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGP-LS----STIDPDHDYDLIAD   79 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~---~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A-~~----~~~~~~nV~~~~gD   79 (165)
                      +++...++.+.+...   .++++|||+ ||||++|..+++. +++|+|+|++++|+... +.    ...+..|++..  +
T Consensus        56 vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~--~  133 (228)
T TIGR00478        56 VSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYV--T  133 (228)
T ss_pred             hhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccC--C
Confidence            345555555555432   367899999 9999999999998 57899999999887752 21    12344555522  2


Q ss_pred             CCCCCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCC
Q psy8015          80 GRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        80 ~~~~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      ....+++...||+.|++...  +.+.+.+.|+| |.+++.+-++
T Consensus       134 ~~~~~~d~~~~DvsfiS~~~--~l~~i~~~l~~-~~~~~L~KPq  174 (228)
T TIGR00478       134 PADIFPDFATFDVSFISLIS--ILPELDLLLNP-NDLTLLFKPQ  174 (228)
T ss_pred             HhHcCCCceeeeEEEeehHh--HHHHHHHHhCc-CeEEEEcChH
Confidence            11222344578988885444  56678899999 9888877543

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.87  E-value=5.3e-10  Score=87.45  Aligned_cols=111  Identities=13%  Similarity=0.048  Sum_probs=84.9

Q ss_pred             CchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC--C
Q psy8015           9 SVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF--G   85 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~--~   85 (165)
                      ++|..++.|+..+.. .+-.++||+ ||||-.+..|-.++.+.+++|+|++|++.|..+. .++  ++.++|+..-.  .
T Consensus       109 ~vP~~l~emI~~~~~-g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg-~YD--~L~~Aea~~Fl~~~  184 (287)
T COG4976         109 SVPELLAEMIGKADL-GPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKG-LYD--TLYVAEAVLFLEDL  184 (287)
T ss_pred             ccHHHHHHHHHhccC-CccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhcc-chH--HHHHHHHHHHhhhc
Confidence            688899999998864 678999999 9999999999999999999999999999996432 122  33445543211  2


Q ss_pred             CCCCccEEEEcCCCCC------chHHHHhccccCcEEEEEecCC
Q psy8015          86 DNGPYDAIHVGAAYPR------YPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        86 ~~~~fD~I~i~~~~~~------~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      +..+||.|......+.      +.......|+|||.+.+++.+-
T Consensus       185 ~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l  228 (287)
T COG4976         185 TQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETL  228 (287)
T ss_pred             cCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEeccc
Confidence            3578999988755543      3345678999999999998753

>PHA03412 putative methyltransferase; Provisional

Probab=98.87  E-value=2.8e-08  Score=78.53  Aligned_cols=71  Identities=7%  Similarity=-0.101  Sum_probs=56.8

Q ss_pred             CCCeEEEE-ccccHHHHHHhcc-----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTF-----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~-----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      .+.+|||+ ||||.++..+++.     ..+|+++|+++.+++.|+..   ..+++++.+|..... ..++||+|+.+...
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n---~~~~~~~~~D~~~~~-~~~~FDlIIsNPPY  124 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI---VPEATWINADALTTE-FDTLFDMAISNPPF  124 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh---ccCCEEEEcchhccc-ccCCccEEEECCCC
Confidence            47899999 9999999988864     24899999999999999732   346899999986532 24689999998654


Q ss_pred             C
Q psy8015         100 P  100 (165)
Q Consensus       100 ~  100 (165)
                      .
T Consensus       125 ~  125 (241)
T PHA03412        125 G  125 (241)
T ss_pred             C
Confidence            3

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=2.3e-08  Score=79.97  Aligned_cols=100  Identities=13%  Similarity=-0.000  Sum_probs=74.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC-CCCCCCc
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS-FGDNGPY   90 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~-~~~~~~f   90 (165)
                      ...++++... ..+++.|||| +|.|.+|..|++.+.+|+|+|+|+++++..+......+|++++++|+..- ++....+
T Consensus        18 v~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~   96 (259)
T COG0030          18 VIDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQP   96 (259)
T ss_pred             HHHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCC
Confidence            4667778775 4779999999 99999999999999999999999999998763222467999999999763 2322267


Q ss_pred             cEEEEcCCCCCchHHHHhccccC
Q psy8015          91 DAIHVGAAYPRYPEIFIHHLKSG  113 (165)
Q Consensus        91 D~I~i~~~~~~~p~~l~~~Lkpg  113 (165)
                      +.|+.+-.+.-=.+-++++|+.+
T Consensus        97 ~~vVaNlPY~Isspii~kll~~~  119 (259)
T COG0030          97 YKVVANLPYNISSPILFKLLEEK  119 (259)
T ss_pred             CEEEEcCCCcccHHHHHHHHhcc
Confidence            88887655432223344445544

>PLN02672 methionine S-methyltransferase

Probab=98.86  E-value=9.5e-09  Score=95.64  Aligned_cols=72  Identities=13%  Similarity=-0.091  Sum_probs=57.2

Q ss_pred             CCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCC----------------CCCeEEEEccCCCCCC
Q psy8015          27 RLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTID----------------PDHDYDLIADGRASFG   85 (165)
Q Consensus        27 ~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~----------------~~nV~~~~gD~~~~~~   85 (165)
                      +.+|||+ ||||.++..+++..  .+|+++|+|+++++.|+  .+..+                .++|+++++|..+...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            4689999 99999999999865  58999999999999995  33221                2469999999877554


Q ss_pred             CC-CCccEEEEcCC
Q psy8015          86 DN-GPYDAIHVGAA   98 (165)
Q Consensus        86 ~~-~~fD~I~i~~~   98 (165)
                      .. .+||+|+.+..
T Consensus       199 ~~~~~fDlIVSNPP  212 (1082)
T PLN02672        199 DNNIELDRIVGCIP  212 (1082)
T ss_pred             ccCCceEEEEECCC
Confidence            32 37999999753

>PHA03411 putative methyltransferase; Provisional

Probab=98.86  E-value=1.4e-08  Score=81.80  Aligned_cols=73  Identities=8%  Similarity=-0.065  Sum_probs=58.9

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR  101 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~  101 (165)
                      .+..+|||+ ||+|.++..+++..  .+|+++|++++|++.|+.+   ..+++++++|..+.. ...+||+|+++.....
T Consensus        63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n---~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~  138 (279)
T PHA03411         63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL---LPEAEWITSDVFEFE-SNEKFDVVISNPPFGK  138 (279)
T ss_pred             ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---CcCCEEEECchhhhc-ccCCCcEEEEcCCccc
Confidence            456799999 99999998887754  5899999999999999732   347999999987643 3468999999876643

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.84  E-value=6.4e-09  Score=77.48  Aligned_cols=71  Identities=15%  Similarity=0.011  Sum_probs=55.7

Q ss_pred             EEEeCCHHHHHhcc--cc--cC-CCCCeEEEEccCCCCCCCCCCccEEEEcCCCCCchH------HHHhccccCcEEEEE
Q psy8015          51 FNINVYYYLSGGPL--SS--TI-DPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPE------IFIHHLKSGGRLVIP  119 (165)
Q Consensus        51 ~aiD~~~~~~~~A~--~~--~~-~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p~------~l~~~LkpgG~lvi~  119 (165)
                      +++|+|++|++.|+  .+  .. +..|++++++|+.+...+.++||+|++....+++++      ++.+.|||||++++.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~   80 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL   80 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence            48999999999995  22  11 235799999999764444578999999988877653      689999999999886


Q ss_pred             ec
Q psy8015         120 IG  121 (165)
Q Consensus       120 ~~  121 (165)
                      .-
T Consensus        81 d~   82 (160)
T PLN02232         81 DF   82 (160)
T ss_pred             EC
Confidence            54

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.84  E-value=6.5e-09  Score=87.63  Aligned_cols=107  Identities=12%  Similarity=0.041  Sum_probs=80.0

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC-cEEEEeCCHHHHHhcc--cccCCC--CCeEEEEccCCCCCC--
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPL--SSTIDP--DHDYDLIADGRASFG--   85 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~--~~~~~~--~nV~~~~gD~~~~~~--   85 (165)
                      ..+++.-+   ..|++||++ |=||.+|...|..+. +|++||.|...++.|+  .+..|+  +.+.++++|+.+-+.  
T Consensus       208 ~R~~l~~~---~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~  284 (393)
T COG1092         208 NRRALGEL---AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKA  284 (393)
T ss_pred             HHHHHhhh---ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHH
Confidence            33444443   249999999 999999999998764 9999999999999995  333343  458999999975332  


Q ss_pred             --CCCCccEEEEcCCC-C----C----------chHHHHhccccCcEEEEEecCC
Q psy8015          86 --DNGPYDAIHVGAAY-P----R----------YPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        86 --~~~~fD~I~i~~~~-~----~----------~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                        ...+||+|+++... .    .          +...+.+.|+|||.+++.....
T Consensus       285 ~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         285 ERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             HhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence              23489999998532 1    1          1235789999999999976543

>PLN02823 spermine synthase

Probab=98.84  E-value=2.3e-08  Score=82.96  Aligned_cols=98  Identities=15%  Similarity=0.148  Sum_probs=73.9

Q ss_pred             CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--ccc----CCCCCeEEEEccCCCCCCC-CCCccEEE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SST----IDPDHDYDLIADGRASFGD-NGPYDAIH   94 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~----~~~~nV~~~~gD~~~~~~~-~~~fD~I~   94 (165)
                      ...++||.| +|.|..+..+.+.  ..+|+.+|+|+++++.||  +..    +.-++++++.+|+.+-+.. .++||+|+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi  181 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII  181 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence            456899999 9999999877664  468999999999999997  321    1235799999999764332 46899999


Q ss_pred             EcCCCCC------------chH-HHHhccccCcEEEEEecC
Q psy8015          95 VGAAYPR------------YPE-IFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        95 i~~~~~~------------~p~-~l~~~LkpgG~lvi~~~~  122 (165)
                      ++...+.            .-+ .+.+.|+|||.+++..+.
T Consensus       182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s  222 (336)
T PLN02823        182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP  222 (336)
T ss_pred             ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence            9954431            112 567899999999987643

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.75  E-value=4e-08  Score=82.60  Aligned_cols=94  Identities=9%  Similarity=0.068  Sum_probs=75.7

Q ss_pred             CeEEEE-ccccHHHHHHhcc---CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC-CCCccEEEEcCCCC
Q psy8015          28 LDCLAL-TSNTKQSTTLPTF---IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD-NGPYDAIHVGAAYP  100 (165)
Q Consensus        28 ~~vLei-~GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~-~~~fD~I~i~~~~~  100 (165)
                      -+|||. ||||..+..++..   +.+|+++|+|+++++.++  ++..+.+|++++++|+...+.. ...||+|+++. +.
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG  124 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG  124 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC
Confidence            589999 9999999999875   368999999999999985  5555677899999998764432 25799999987 33


Q ss_pred             ---CchHHHHhccccCcEEEEEecC
Q psy8015         101 ---RYPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus       101 ---~~p~~l~~~LkpgG~lvi~~~~  122 (165)
                         .+-+...+.+++||.|.+...+
T Consensus       125 s~~~fld~al~~~~~~glL~vTaTD  149 (374)
T TIGR00308       125 TPAPFVDSAIQASAERGLLLVTATD  149 (374)
T ss_pred             CcHHHHHHHHHhcccCCEEEEEecc
Confidence               2335677899999999998654

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.74  E-value=4.1e-08  Score=74.58  Aligned_cols=93  Identities=13%  Similarity=0.010  Sum_probs=63.1

Q ss_pred             CCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC-----------cEEEEeCCHHHHHhcc--cccCCCCC-
Q psy8015           8 GSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP-----------NSFNINVYYYLSGGPL--SSTIDPDH-   72 (165)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~-----------~V~aiD~~~~~~~~A~--~~~~~~~n-   72 (165)
                      .|.....|..+-.+....+++.|||- ||||.+..+.+....           ++++.|+++++++.|+  ++..+..+ 
T Consensus        10 a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~   89 (179)
T PF01170_consen   10 APLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY   89 (179)
T ss_dssp             TSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred             CCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence            44455555555555566889999999 999999977776542           2779999999999996  67777764 


Q ss_pred             eEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015          73 DYDLIADGRASFGDNGPYDAIHVGAAYP  100 (165)
Q Consensus        73 V~~~~gD~~~~~~~~~~fD~I~i~~~~~  100 (165)
                      +++.++|+.+.....+.+|.|+.+....
T Consensus        90 i~~~~~D~~~l~~~~~~~d~IvtnPPyG  117 (179)
T PF01170_consen   90 IDFIQWDARELPLPDGSVDAIVTNPPYG  117 (179)
T ss_dssp             EEEEE--GGGGGGTTSBSCEEEEE--ST
T ss_pred             eEEEecchhhcccccCCCCEEEECcchh
Confidence            8999999876443457899999987664

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.72  E-value=3.3e-08  Score=76.11  Aligned_cols=98  Identities=18%  Similarity=0.104  Sum_probs=73.5

Q ss_pred             CCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC---CCCCCccEEEEcC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF---GDNGPYDAIHVGA   97 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~---~~~~~fD~I~i~~   97 (165)
                      ....+||| ||.|.+...+|..-  ..++|+|++...+..|.  ..+.+++|+.++.+|+...+   .+.+++|.|++..
T Consensus        17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F   96 (195)
T PF02390_consen   17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF   96 (195)
T ss_dssp             CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred             CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence            44589999 99999999999876  47999999999999884  56668999999999997622   3457999999987


Q ss_pred             CCCCc--------------hHHHHhccccCcEEEEEecCC
Q psy8015          98 AYPRY--------------PEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        98 ~~~~~--------------p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      ..|..              .+.+.+.|+|||.+.+..+..
T Consensus        97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~  136 (195)
T PF02390_consen   97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE  136 (195)
T ss_dssp             -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H
T ss_pred             CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH
Confidence            66522              135789999999998876643

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.72  E-value=6.8e-09  Score=77.74  Aligned_cols=70  Identities=7%  Similarity=-0.046  Sum_probs=51.8

Q ss_pred             CeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCC---CCccEEEEcC
Q psy8015          28 LDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDN---GPYDAIHVGA   97 (165)
Q Consensus        28 ~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~---~~fD~I~i~~   97 (165)
                      +.|+|+ ||.|..|..+|+.+.+|+++|+|+..++.|+  .+-.|. +||+++++|..+.+...   ..||+||++.
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP   77 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP   77 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred             CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence            369999 9999999999999999999999999999996  666775 47999999987643321   1289999974

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.71  E-value=1e-08  Score=83.19  Aligned_cols=107  Identities=16%  Similarity=0.052  Sum_probs=72.4

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc----cccCCCCCeEEEEccCCCCCC--
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL----SSTIDPDHDYDLIADGRASFG--   85 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~----~~~~~~~nV~~~~gD~~~~~~--   85 (165)
                      ..+++...   ..+++||++ |=||.++...+... .+|+++|.|..+++.|+    ++.+..++++++.+|+.+-+.  
T Consensus       114 nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~  190 (286)
T PF10672_consen  114 NRKWVRKY---AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRL  190 (286)
T ss_dssp             HHHHHHHH---CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHH
T ss_pred             hHHHHHHH---cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHH
Confidence            34444443   468999999 99999998877655 58999999999999995    344445679999999875332  


Q ss_pred             -CCCCccEEEEcCCCC-----Cc-------hHHHHhccccCcEEEEEecCC
Q psy8015          86 -DNGPYDAIHVGAAYP-----RY-------PEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        86 -~~~~fD~I~i~~~~~-----~~-------p~~l~~~LkpgG~lvi~~~~~  123 (165)
                       ..++||+|+++...-     .+       ...+.+.|+|||.|+......
T Consensus       191 ~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~  241 (286)
T PF10672_consen  191 KKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH  241 (286)
T ss_dssp             HHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred             hcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence             246899999985421     11       124679999999998766543

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.71  E-value=1.2e-07  Score=72.31  Aligned_cols=71  Identities=8%  Similarity=0.013  Sum_probs=58.9

Q ss_pred             CCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP  100 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~  100 (165)
                      .|.+|+|+ ||||.++.-.+.+. .+|+++|+|+++++.++  .++ ...+|+|+.+|+...   .++||.++.+..+.
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~---~~~~dtvimNPPFG  119 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDF---RGKFDTVIMNPPFG  119 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhc---CCccceEEECCCCc
Confidence            57889999 99999999888876 68999999999999996  444 456899999998753   35799998886553

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.66  E-value=1.7e-07  Score=74.68  Aligned_cols=108  Identities=16%  Similarity=0.103  Sum_probs=75.8

Q ss_pred             EEEecCCchHHHHHHHHHHhc----CCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEE
Q psy8015           3 IVFVSGSVSGAVAKYVTYLSG----HSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLI   77 (165)
Q Consensus         3 ~~~~~~~~~~~~~~~l~~l~~----~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~   77 (165)
                      .|||..    +..+++..-..    -....++||| +|.|-.|..+++...+|++.|.|+.|...  +++.|.   +++.
T Consensus        71 FvfS~~----Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~r--L~~kg~---~vl~  141 (265)
T PF05219_consen   71 FVFSEE----QFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWR--LSKKGF---TVLD  141 (265)
T ss_pred             EEecHH----HHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHH--HHhCCC---eEEe
Confidence            355543    67777775411    0246789999 99999999999999999999999999664  333344   3333


Q ss_pred             ccCCCCCCCCCCccEEEEcCCCC--C----chHHHHhccccCcEEEEEec
Q psy8015          78 ADGRASFGDNGPYDAIHVGAAYP--R----YPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        78 gD~~~~~~~~~~fD~I~i~~~~~--~----~p~~l~~~LkpgG~lvi~~~  121 (165)
                      .|-..  ....+||+|-+-..+.  .    +...+.+.|+|+|++++.+-
T Consensus       142 ~~~w~--~~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvV  189 (265)
T PF05219_consen  142 IDDWQ--QTDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVV  189 (265)
T ss_pred             hhhhh--ccCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence            33221  1235899999876554  2    33578899999999998754

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK04148 hypothetical protein; Provisional

Probab=98.65  E-value=2.4e-07  Score=67.23  Aligned_cols=93  Identities=11%  Similarity=-0.054  Sum_probs=68.9

Q ss_pred             CCCCeEEEE-ccccH-HHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC-CCCccEEEEcCCCCC
Q psy8015          25 SKRLDCLAL-TSNTK-QSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD-NGPYDAIHVGAAYPR  101 (165)
Q Consensus        25 ~~~~~vLei-~GsG~-~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~-~~~fD~I~i~~~~~~  101 (165)
                      .++.++||| ||+|+ ++..|++...+|+++|++++.++.|+..     .++++.+|.++.-.+ ...+|+|+.-...++
T Consensus        15 ~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----~~~~v~dDlf~p~~~~y~~a~liysirpp~e   89 (134)
T PRK04148         15 GKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----GLNAFVDDLFNPNLEIYKNAKLIYSIRPPRD   89 (134)
T ss_pred             ccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----CCeEEECcCCCCCHHHHhcCCEEEEeCCCHH
Confidence            467899999 99997 9999999889999999999999888522     368899998764433 467999999888877


Q ss_pred             chHHHHhcccc-CcEEEE-EecC
Q psy8015         102 YPEIFIHHLKS-GGRLVI-PIGD  122 (165)
Q Consensus       102 ~p~~l~~~Lkp-gG~lvi-~~~~  122 (165)
                      +...+.+.-+. |.-+++ +...
T Consensus        90 l~~~~~~la~~~~~~~~i~~l~~  112 (134)
T PRK04148         90 LQPFILELAKKINVPLIIKPLSG  112 (134)
T ss_pred             HHHHHHHHHHHcCCCEEEEcCCC
Confidence            76654443332 333333 4443

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.61  E-value=9.9e-08  Score=77.46  Aligned_cols=111  Identities=16%  Similarity=0.118  Sum_probs=83.8

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF   84 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~   84 (165)
                      .+....+...+....++++|||. ++.|.-|..++.+.   ++|+|.|++++.++..+  ++++|..|+.....|+....
T Consensus        70 Qd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~  149 (283)
T PF01189_consen   70 QDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLD  149 (283)
T ss_dssp             HHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHH
T ss_pred             cccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccc
Confidence            33444444444445899999999 99999999999886   58999999999999874  78899999999998876532


Q ss_pred             --CCCCCccEEEEcCCCCC------chH----------------------HHHhcc----ccCcEEEEEec
Q psy8015          85 --GDNGPYDAIHVGAAYPR------YPE----------------------IFIHHL----KSGGRLVIPIG  121 (165)
Q Consensus        85 --~~~~~fD~I~i~~~~~~------~p~----------------------~l~~~L----kpgG~lvi~~~  121 (165)
                        .....||.|++++.+..      -|+                      ...+.+    ||||++|...-
T Consensus       150 ~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC  220 (283)
T PF01189_consen  150 PKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC  220 (283)
T ss_dssp             HHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred             ccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence              22346999999976642      121                      246889    99999999753

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.61  E-value=5.4e-07  Score=70.96  Aligned_cols=90  Identities=14%  Similarity=0.063  Sum_probs=71.3

Q ss_pred             cCCCCCeEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          23 GHSKRLDCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        23 ~~~~~~~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      ...+..+|+|| .|+|.++..+++...  +++..|. |+.++.++.    .++|+++.||..+.+|.   +|++++...+
T Consensus        97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~~rv~~~~gd~f~~~P~---~D~~~l~~vL  168 (241)
T PF00891_consen   97 DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----ADRVEFVPGDFFDPLPV---ADVYLLRHVL  168 (241)
T ss_dssp             TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----TTTEEEEES-TTTCCSS---ESEEEEESSG
T ss_pred             cccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----ccccccccccHHhhhcc---ccceeeehhh
Confidence            34677899999 999999999998764  7888998 888887754    56899999999865553   9999999999


Q ss_pred             CCchH--------HHHhccccC--cEEEEEe
Q psy8015         100 PRYPE--------IFIHHLKSG--GRLVIPI  120 (165)
Q Consensus       100 ~~~p~--------~l~~~Lkpg--G~lvi~~  120 (165)
                      ++.++        .+.+.|+||  |+|++..
T Consensus       169 h~~~d~~~~~iL~~~~~al~pg~~g~llI~e  199 (241)
T PF00891_consen  169 HDWSDEDCVKILRNAAAALKPGKDGRLLIIE  199 (241)
T ss_dssp             GGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred             hhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence            87664        468899999  9999864

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.60  E-value=4.1e-07  Score=73.82  Aligned_cols=95  Identities=18%  Similarity=0.126  Sum_probs=75.7

Q ss_pred             CeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccC----CCCCeEEEEccCCCCCCCC-CCccEEEEcC
Q psy8015          28 LDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTI----DPDHDYDLIADGRASFGDN-GPYDAIHVGA   97 (165)
Q Consensus        28 ~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~----~~~nV~~~~gD~~~~~~~~-~~fD~I~i~~   97 (165)
                      ++||-| -|.|..+..+.+.-  .+++.+|+|+++++.||  +...    .-+.++++.+|+.+-+... .+||+|+++.
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~  157 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS  157 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence            699999 99999999998865  79999999999999997  3222    1357999999997744432 3799999997


Q ss_pred             CCCCch----------HHHHhccccCcEEEEEecC
Q psy8015          98 AYPRYP----------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        98 ~~~~~p----------~~l~~~LkpgG~lvi~~~~  122 (165)
                      ..+.=|          +.+.+.|+|+|.+++..+.
T Consensus       158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~  192 (282)
T COG0421         158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGS  192 (282)
T ss_pred             CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence            766222          4689999999999998443

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.58  E-value=5.3e-07  Score=71.04  Aligned_cols=98  Identities=16%  Similarity=0.142  Sum_probs=80.5

Q ss_pred             CCeEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCC---CCCCCCCccEEEEcCC
Q psy8015          27 RLDCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRA---SFGDNGPYDAIHVGAA   98 (165)
Q Consensus        27 ~~~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~---~~~~~~~fD~I~i~~~   98 (165)
                      ...+||| ||.|.+...+|+.-.  ..+|||+....+..|.  .++.+++|+.++++||..   -+.+.++.|.|++...
T Consensus        49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP  128 (227)
T COG0220          49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP  128 (227)
T ss_pred             CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence            3689999 999999999998864  6999999999999883  777888899999999975   3345569999999877


Q ss_pred             CCCc--------------hHHHHhccccCcEEEEEecCCC
Q psy8015          99 YPRY--------------PEIFIHHLKSGGRLVIPIGDTK  124 (165)
Q Consensus        99 ~~~~--------------p~~l~~~LkpgG~lvi~~~~~~  124 (165)
                      .|..              .+.+.+.|+|||.+.+..+..+
T Consensus       129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~  168 (227)
T COG0220         129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEE  168 (227)
T ss_pred             CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHH
Confidence            6532              2457899999999999876543

>KOG2904|consensus

Probab=98.57  E-value=8.1e-07  Score=71.35  Aligned_cols=109  Identities=17%  Similarity=0.075  Sum_probs=77.2

Q ss_pred             HHHHHHHHHhcC--CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCC-eEEE----EccC
Q psy8015          13 AVAKYVTYLSGH--SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDH-DYDL----IADG   80 (165)
Q Consensus        13 ~~~~~l~~l~~~--~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~----~gD~   80 (165)
                      .+...++.+...  .++..+||+ ||||..+.-+++..  ..|+|+|.|+.++..|.  ..++++.+ +.++    .+|.
T Consensus       133 ~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~  212 (328)
T KOG2904|consen  133 WVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDA  212 (328)
T ss_pred             HHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccc
Confidence            455566665432  356689999 99999998888765  57999999999999994  55556554 7777    4555


Q ss_pred             CCCCC-CCCCccEEEEcCCCC---Cch-----------H------------------HHHhccccCcEEEEEec
Q psy8015          81 RASFG-DNGPYDAIHVGAAYP---RYP-----------E------------------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        81 ~~~~~-~~~~fD~I~i~~~~~---~~p-----------~------------------~l~~~LkpgG~lvi~~~  121 (165)
                      ....+ ..+++|.++++..+-   +++           .                  -..+.|+|||.++...+
T Consensus       213 ~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~  286 (328)
T KOG2904|consen  213 SDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV  286 (328)
T ss_pred             ccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence            54332 247899999875431   111           0                  13589999999999887

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.56  E-value=1.3e-07  Score=77.11  Aligned_cols=88  Identities=8%  Similarity=-0.090  Sum_probs=69.7

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS   83 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~   83 (165)
                      +|=+...+++.|. ..|+..++|. ||.|..|..+++..   ++|+|+|.|+++++.|+  ++.  .++++++++|..+.
T Consensus         4 ~pVll~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l   80 (296)
T PRK00050          4 IPVLLDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNL   80 (296)
T ss_pred             ccccHHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHH
Confidence            3456778899985 3789999999 99999999999875   68999999999999996  433  46899999997542


Q ss_pred             ---CCC-CCCccEEEEcCCCC
Q psy8015          84 ---FGD-NGPYDAIHVGAAYP  100 (165)
Q Consensus        84 ---~~~-~~~fD~I~i~~~~~  100 (165)
                         .++ ..+||.|+++-+..
T Consensus        81 ~~~l~~~~~~vDgIl~DLGvS  101 (296)
T PRK00050         81 KEVLAEGLGKVDGILLDLGVS  101 (296)
T ss_pred             HHHHHcCCCccCEEEECCCcc
Confidence               122 12799999985543

>KOG3010|consensus

Probab=98.55  E-value=1.8e-07  Score=73.73  Aligned_cols=95  Identities=12%  Similarity=0.064  Sum_probs=65.3

Q ss_pred             CCCC-eEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccc-cCCCCC--eEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          25 SKRL-DCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSS-TIDPDH--DYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        25 ~~~~-~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~-~~~~~n--V~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      .++. ..+|+ ||+|.-+..+|....+|+|+|+|++|++.|+.. ..-..+  ......+.......+++.|.|.+.-+.
T Consensus        31 ~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~  110 (261)
T KOG3010|consen   31 TEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV  110 (261)
T ss_pred             CCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence            3444 89999 999988888888889999999999999999621 111111  222223333333235789999998888


Q ss_pred             CCc--h---HHHHhccccCcEEEEE
Q psy8015         100 PRY--P---EIFIHHLKSGGRLVIP  119 (165)
Q Consensus       100 ~~~--p---~~l~~~LkpgG~lvi~  119 (165)
                      |..  +   ....+.||+.|-++++
T Consensus       111 HWFdle~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen  111 HWFDLERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             HhhchHHHHHHHHHHcCCCCCEEEE
Confidence            743  2   3578899998855554

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.55  E-value=6.1e-07  Score=67.26  Aligned_cols=109  Identities=17%  Similarity=0.071  Sum_probs=80.6

Q ss_pred             CCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHH-HhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC
Q psy8015           8 GSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTT-LPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS   83 (165)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~-la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~   83 (165)
                      +|-|...++|...... +.|.-|||+ .|||-+|.. |++..  ..++++|.|++.+..-+..   .+.+.+++||+...
T Consensus        31 PsSs~lA~~M~s~I~p-esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~---~p~~~ii~gda~~l  106 (194)
T COG3963          31 PSSSILARKMASVIDP-ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL---YPGVNIINGDAFDL  106 (194)
T ss_pred             CCcHHHHHHHHhccCc-ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh---CCCccccccchhhH
Confidence            3445567778777754 788999999 999999954 55554  4799999999999877522   34677999998642


Q ss_pred             C-----CCCCCccEEEEcCCCCCch--------HHHHhccccCcEEEEEe
Q psy8015          84 F-----GDNGPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        84 ~-----~~~~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~  120 (165)
                      -     .....||+|+++-..-++|        +.+...|.+||.+|-..
T Consensus       107 ~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft  156 (194)
T COG3963         107 RTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT  156 (194)
T ss_pred             HHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence            2     2235799999987666655        56788899999887654

>KOG2899|consensus

Probab=98.54  E-value=1.1e-07  Score=74.97  Aligned_cols=39  Identities=5%  Similarity=0.024  Sum_probs=35.7

Q ss_pred             CCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL   64 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~   64 (165)
                      .+..+||| |-+|.+|+.+|+..  ..|.++|+|+.+++.||
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ar   99 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRAR   99 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHH
Confidence            57889999 99999999999875  57999999999999996

>KOG1499|consensus

Probab=98.54  E-value=1.9e-07  Score=77.01  Aligned_cols=91  Identities=10%  Similarity=-0.085  Sum_probs=69.3

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCC-CCCCCCCccEEEEcCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRA-SFGDNGPYDAIHVGAA   98 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~-~~~~~~~fD~I~i~~~   98 (165)
                      -+++.|||+ ||||.++...|+.+ .+|+|+|.+.=+ +.|+  .+..+.++ |+++.|.+.+ .+| ..+.|.|+.-..
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP-~eKVDiIvSEWM  136 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP-VEKVDIIVSEWM  136 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC-ccceeEEeehhh
Confidence            368999999 99999999888876 689999988744 7775  55567777 9999999877 344 578999988643


Q ss_pred             CC-----CchHHH----HhccccCcEEE
Q psy8015          99 YP-----RYPEIF----IHHLKSGGRLV  117 (165)
Q Consensus        99 ~~-----~~p~~l----~~~LkpgG~lv  117 (165)
                      -.     .+.+.+    -++|+|||.++
T Consensus       137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  137 GYFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             hHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            32     233322    37899999865

>KOG2187|consensus

Probab=98.52  E-value=3.1e-07  Score=78.96  Aligned_cols=136  Identities=7%  Similarity=-0.033  Sum_probs=91.7

Q ss_pred             HHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCC-----CC
Q psy8015          18 VTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDN-----GP   89 (165)
Q Consensus        18 l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~-----~~   89 (165)
                      -+|+ +...++.++|+ ||||.++..+|+.+++|+++|++++.++.|+  ....|++|.+|+.|-+.+.++..     +.
T Consensus       376 ~e~~-~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~  454 (534)
T KOG2187|consen  376 GEWA-GLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDS  454 (534)
T ss_pred             HHHh-CCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCC
Confidence            3444 55778999999 9999999999999999999999999999996  56668999999999766544331     23


Q ss_pred             cc-EEEEcCCCCCchHHHH---hccc-cCcEEEEEecCCCc----eEEEEEEE--ccCCcEEEEEeeeEEEeeecc
Q psy8015          90 YD-AIHVGAAYPRYPEIFI---HHLK-SGGRLVIPIGDTKQ----QMLTIYDK--FHNGTIDIQHWGVVQVGLLYD  154 (165)
Q Consensus        90 fD-~I~i~~~~~~~p~~l~---~~Lk-pgG~lvi~~~~~~~----~~~~~~~k--~~~~~~~~~~l~~~~~~pl~~  154 (165)
                      =+ +++++....-+...+.   +..+ +-=.+++.|...+.    ..+..=.+  ...|.|.......++.+|.++
T Consensus       455 ~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t~ar~v~~lc~~~~~~~~~g~fr~~~~~~VDlfP~T~  530 (534)
T KOG2187|consen  455 ETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHTAARNVIDLCSSPKYRLKKGFFRLVKAVGVDLFPHTP  530 (534)
T ss_pred             CceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHHHhhhhHHHhhcCccccccccccceeeeeecccCCCCC
Confidence            35 6666655544433222   3333 55666777765431    11111111  112457777777887777664

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.50  E-value=2.8e-07  Score=73.39  Aligned_cols=97  Identities=20%  Similarity=0.223  Sum_probs=73.4

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--ccc----CCCCCeEEEEccCCCCCCC-CC-CccEE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SST----IDPDHDYDLIADGRASFGD-NG-PYDAI   93 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~----~~~~nV~~~~gD~~~~~~~-~~-~fD~I   93 (165)
                      ...++||-| -|.|..+..+.+.-  .+|+.+|+|+++++.|+  +..    ..-++++++.+|+..-+.. .+ +||+|
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            568999999 99999999988764  68999999999999996  221    2345799999999653222 23 79999


Q ss_pred             EEcCCCCCch----------HHHHhccccCcEEEEEec
Q psy8015          94 HVGAAYPRYP----------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        94 ~i~~~~~~~p----------~~l~~~LkpgG~lvi~~~  121 (165)
                      +++...+.-+          +.+.+.|+|||.++...+
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~  192 (246)
T PF01564_consen  155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG  192 (246)
T ss_dssp             EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence            9987765322          357899999999999864

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.49  E-value=3.7e-07  Score=74.47  Aligned_cols=110  Identities=17%  Similarity=0.101  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc---------CCcEEEEeCCHHHHHhcc----cccCCCCCeEEEE
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF---------IPNSFNINVYYYLSGGPL----SSTIDPDHDYDLI   77 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~---------~~~V~aiD~~~~~~~~A~----~~~~~~~nV~~~~   77 (165)
                      ..+++++..+....++.+|+|- ||+|.+...+.+.         -.+++++|+++.++..|+    +...+..+..+..
T Consensus        32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~  111 (311)
T PF02384_consen   32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQ  111 (311)
T ss_dssp             HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEE
T ss_pred             HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccc
Confidence            3444444333355778899999 9999988776652         257999999999999986    2222233457889


Q ss_pred             ccCCCCCCC--CCCccEEEEcCCCCCc------------------h---------HHHHhccccCcEEEEEec
Q psy8015          78 ADGRASFGD--NGPYDAIHVGAAYPRY------------------P---------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        78 gD~~~~~~~--~~~fD~I~i~~~~~~~------------------p---------~~l~~~LkpgG~lvi~~~  121 (165)
                      +|.......  ...||+|+.+......                  +         ....+.|++||++++.++
T Consensus       112 ~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp  184 (311)
T PF02384_consen  112 GDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP  184 (311)
T ss_dssp             S-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence            997653322  4689999998544321                  0         135799999999888765

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.48  E-value=3.2e-07  Score=70.08  Aligned_cols=94  Identities=14%  Similarity=0.055  Sum_probs=73.8

Q ss_pred             eEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC--C
Q psy8015          29 DCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP--R  101 (165)
Q Consensus        29 ~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~--~  101 (165)
                      +++|| ||.|+-+..||=..  .+|+-+|.+.+-+..-+  .+.+|++|++++++.+.+ .....+||+|+.-+..+  .
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~~l~~  129 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVAPLDK  129 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSSSHHH
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhcCHHH
Confidence            89999 99999999888665  47999999999998876  678899999999999877 33457899998876553  3


Q ss_pred             chHHHHhccccCcEEEEEecCC
Q psy8015         102 YPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus       102 ~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      +-+-+...|++||++++.-|..
T Consensus       130 l~~~~~~~l~~~G~~l~~KG~~  151 (184)
T PF02527_consen  130 LLELARPLLKPGGRLLAYKGPD  151 (184)
T ss_dssp             HHHHHGGGEEEEEEEEEEESS-
T ss_pred             HHHHHHHhcCCCCEEEEEcCCC
Confidence            4456678999999999988754

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK00536 speE spermidine synthase; Provisional

Probab=98.43  E-value=2.3e-06  Score=68.81  Aligned_cols=96  Identities=9%  Similarity=-0.062  Sum_probs=73.0

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--c----ccCCCCCeEEEEccCCCCCCCCCCccEEEEc
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--S----STIDPDHDYDLIADGRASFGDNGPYDAIHVG   96 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~----~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~   96 (165)
                      +...++||=| .|-|..+.++.+--.+|+-+|+|+++++.+|  +    ..++-++++++.. ..+  ...++||+|+++
T Consensus        70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD  146 (262)
T PRK00536         70 KKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL  146 (262)
T ss_pred             CCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence            3567999999 9999999999987679999999999999996  2    2234456888762 111  113689999999


Q ss_pred             CCCC-CchHHHHhccccCcEEEEEecC
Q psy8015          97 AAYP-RYPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        97 ~~~~-~~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      ...+ +.-+.+.+.|+|||.++.-.+.
T Consensus       147 s~~~~~fy~~~~~~L~~~Gi~v~Qs~s  173 (262)
T PRK00536        147 QEPDIHKIDGLKRMLKEDGVFISVAKH  173 (262)
T ss_pred             CCCChHHHHHHHHhcCCCcEEEECCCC
Confidence            6543 3445789999999999996543

>KOG0820|consensus

Probab=98.43  E-value=1.8e-06  Score=69.24  Aligned_cols=83  Identities=7%  Similarity=-0.110  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCC---CeEEEEccCCCCCCCC
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPD---HDYDLIADGRASFGDN   87 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~---nV~~~~gD~~~~~~~~   87 (165)
                      .....+++... +++++.|||+ .|||.+|..|-..+.+|+|+|+|+.|+.....+-.|.+   ..++++||.....  .
T Consensus        45 ~v~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d--~  121 (315)
T KOG0820|consen   45 LVIDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD--L  121 (315)
T ss_pred             HHHHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC--C
Confidence            34555666653 5899999999 99999999999999999999999999987742223433   4899999986532  2


Q ss_pred             CCccEEEEcC
Q psy8015          88 GPYDAIHVGA   97 (165)
Q Consensus        88 ~~fD~I~i~~   97 (165)
                      ..||.++.+-
T Consensus       122 P~fd~cVsNl  131 (315)
T KOG0820|consen  122 PRFDGCVSNL  131 (315)
T ss_pred             cccceeeccC
Confidence            3689877753

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.42  E-value=1.1e-06  Score=66.28  Aligned_cols=97  Identities=8%  Similarity=-0.023  Sum_probs=60.1

Q ss_pred             CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cccCC---CCCeEEEEccCCCCC----CCCCCccE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SSTID---PDHDYDLIADGRASF----GDNGPYDA   92 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~~~---~~nV~~~~gD~~~~~----~~~~~fD~   92 (165)
                      .++.+|||+ ||+|..+..++.+  ..+|+..|.++ .++..+  ++..+   ..++++..-|-.+..    .+..+||.
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~  122 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV  122 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence            678999999 9999999999998  57999999999 777664  33322   346787776643311    22358999


Q ss_pred             EEEcCCCCC------chHHHHhccccCcEEEEEecC
Q psy8015          93 IHVGAAYPR------YPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        93 I~i~~~~~~------~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      |+.......      +.+.+.+.|+|+|.+++....
T Consensus       123 IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~  158 (173)
T PF10294_consen  123 ILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKR  158 (173)
T ss_dssp             EEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred             EEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence            988765532      224578899999997776654

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.42  E-value=1.9e-06  Score=70.13  Aligned_cols=96  Identities=18%  Similarity=0.117  Sum_probs=68.7

Q ss_pred             CCeEEEE-cccc----HHHHHHhccC------CcEEEEeCCHHHHHhccc---c-----c-----------------CC-
Q psy8015          27 RLDCLAL-TSNT----KQSTTLPTFI------PNSFNINVYYYLSGGPLS---S-----T-----------------ID-   69 (165)
Q Consensus        27 ~~~vLei-~GsG----~~t~~la~~~------~~V~aiD~~~~~~~~A~~---~-----~-----------------~~-   69 (165)
                      .-|||-. |+||    .+|..+....      -+|+|+|+|+.+++.|+.   .     .                 -| 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            4699999 9999    3444444432      269999999999999951   1     0                 01 


Q ss_pred             ------C-CCeEEEEccCCC-CCCCCCCccEEEEcCCCCCch--------HHHHhccccCcEEEEEecC
Q psy8015          70 ------P-DHDYDLIADGRA-SFGDNGPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        70 ------~-~nV~~~~gD~~~-~~~~~~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~~~  122 (165)
                            + ..|+|...|..+ .++..+.||+|+|.....++.        +.+.+.|+|||.|++-..+
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sE  264 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSE  264 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence                  2 347899999876 344457899999987665442        3578999999998886654

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.41  E-value=1.6e-06  Score=71.60  Aligned_cols=75  Identities=8%  Similarity=-0.037  Sum_probs=54.6

Q ss_pred             CCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccC-CCC-CeEEEE-ccC---CCCC-CCCCCccEE
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTI-DPD-HDYDLI-ADG---RASF-GDNGPYDAI   93 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~-~~~-nV~~~~-gD~---~~~~-~~~~~fD~I   93 (165)
                      ++.++||| ||+|.+...++...  -+++++|+|+.+++.|+  .+.. ++. +|+++. .|.   ..+. .+.+.||+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            56899999 99998887777543  48999999999999996  4444 454 588764 332   2222 234689999


Q ss_pred             EEcCCCC
Q psy8015          94 HVGAAYP  100 (165)
Q Consensus        94 ~i~~~~~  100 (165)
                      +++..+.
T Consensus       194 vcNPPf~  200 (321)
T PRK11727        194 LCNPPFH  200 (321)
T ss_pred             EeCCCCc
Confidence            9987654

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.40  E-value=1.5e-06  Score=67.16  Aligned_cols=94  Identities=16%  Similarity=0.076  Sum_probs=66.8

Q ss_pred             CCCeEEEE-ccccHHHHHHhccCCc--EEEEeCCHHHHHhcc--cccCCCCCe-EEEEccCCCC-CC-------CCCCcc
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFIPN--SFNINVYYYLSGGPL--SSTIDPDHD-YDLIADGRAS-FG-------DNGPYD   91 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~~~--V~aiD~~~~~~~~A~--~~~~~~~nV-~~~~gD~~~~-~~-------~~~~fD   91 (165)
                      .+.+|||| +|||.-+..+|+...+  -.-.|.++....-.+  .+..+.+|+ .-+.-|+... ++       ..++||
T Consensus        25 ~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D  104 (204)
T PF06080_consen   25 SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFD  104 (204)
T ss_pred             cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcc
Confidence            34469999 9999999999998764  456788888854332  445566664 2344454432 22       235899


Q ss_pred             EEEEcCCCCCchH--------HHHhccccCcEEEEE
Q psy8015          92 AIHVGAAYPRYPE--------IFIHHLKSGGRLVIP  119 (165)
Q Consensus        92 ~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~  119 (165)
                      +||+....|-.|.        ...+.|++||.|++.
T Consensus       105 ~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y  140 (204)
T PF06080_consen  105 AIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLY  140 (204)
T ss_pred             eeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence            9999988887763        356899999999884

The function of this family is unknown.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.36  E-value=2.2e-06  Score=68.72  Aligned_cols=70  Identities=11%  Similarity=-0.070  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA   82 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~   82 (165)
                      ....++++.+. ..++..|+|| +|+|.+|..|++.+.+|+++|+|+++++..+.+....+|++++.+|+..
T Consensus        17 ~~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~   87 (262)
T PF00398_consen   17 NIADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLK   87 (262)
T ss_dssp             HHHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTT
T ss_pred             HHHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecchhc
Confidence            45667888875 4689999999 9999999999999999999999999999886322245789999999976

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK10742 putative methyltransferase; Provisional

Probab=98.36  E-value=1.1e-06  Score=69.95  Aligned_cols=79  Identities=8%  Similarity=-0.019  Sum_probs=63.2

Q ss_pred             cCCCCC--eEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccC------C--C-CCeEEEEccCCCCCCC-C
Q psy8015          23 GHSKRL--DCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTI------D--P-DHDYDLIADGRASFGD-N   87 (165)
Q Consensus        23 ~~~~~~--~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~------~--~-~nV~~~~gD~~~~~~~-~   87 (165)
                      .++++.  +|||. +|+|..+..++..+.+|+.+|.++.+....+  ++++      +  + .+++++++|+.+-+.. .
T Consensus        83 glk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~  162 (250)
T PRK10742         83 GIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT  162 (250)
T ss_pred             CCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence            446777  99999 9999999999999888999999999998874  4432      3  2 5799999998654332 2


Q ss_pred             CCccEEEEcCCCCC
Q psy8015          88 GPYDAIHVGAAYPR  101 (165)
Q Consensus        88 ~~fD~I~i~~~~~~  101 (165)
                      ..||+||++..+++
T Consensus       163 ~~fDVVYlDPMfp~  176 (250)
T PRK10742        163 PRPQVVYLDPMFPH  176 (250)
T ss_pred             CCCcEEEECCCCCC
Confidence            47999999988874

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.35  E-value=1.9e-06  Score=74.11  Aligned_cols=90  Identities=13%  Similarity=-0.046  Sum_probs=60.6

Q ss_pred             CCeEEEE-ccccHHHHHHhccC------CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCCCCccEEEEc
Q psy8015          27 RLDCLAL-TSNTKQSTTLPTFI------PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDNGPYDAIHVG   96 (165)
Q Consensus        27 ~~~vLei-~GsG~~t~~la~~~------~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~~~fD~I~i~   96 (165)
                      +..|||| ||+|-++...++.+      .+|+|+|.|+.+....+  .+..+. ++|+++++|..+- ....+.|+|+.-
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v-~lpekvDIIVSE  265 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV-ELPEKVDIIVSE  265 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS-CHSS-EEEEEE-
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC-CCCCceeEEEEe
Confidence            5789999 99999986665543      58999999998877653  255566 4699999998763 323589999884


Q ss_pred             C----CCCCc-hH---HHHhccccCcEEE
Q psy8015          97 A----AYPRY-PE---IFIHHLKSGGRLV  117 (165)
Q Consensus        97 ~----~~~~~-p~---~l~~~LkpgG~lv  117 (165)
                      -    ...++ |+   ..-+.|||||+++
T Consensus       266 lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  266 LLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             --BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            2    22333 33   3457899998754

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.30  E-value=2.1e-06  Score=71.24  Aligned_cols=98  Identities=14%  Similarity=0.015  Sum_probs=67.4

Q ss_pred             CCCeEEEE-cccc-HHHHHHhccCCcEEEEeCCHHHHHhcc--c---cc----CCC---CCeEEEEccCCCC-----CCC
Q psy8015          26 KRLDCLAL-TSNT-KQSTTLPTFIPNSFNINVYYYLSGGPL--S---ST----IDP---DHDYDLIADGRAS-----FGD   86 (165)
Q Consensus        26 ~~~~vLei-~GsG-~~t~~la~~~~~V~aiD~~~~~~~~A~--~---~~----~~~---~nV~~~~gD~~~~-----~~~   86 (165)
                      ++.+|||+ ||=| -+--|...-.++++++|+++..++.|+  .   ++    ...   -..+++.+|....     +++
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            78999999 9955 566777666799999999999999995  2   11    011   2468899998631     222


Q ss_pred             -CCCccEEEEcCCCCCch----------HHHHhccccCcEEEEEecCC
Q psy8015          87 -NGPYDAIHVGAAYPRYP----------EIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        87 -~~~fD~I~i~~~~~~~p----------~~l~~~LkpgG~lvi~~~~~  123 (165)
                       ..+||+|-+-.+.|..-          ..+.+.|+|||+++..+.+.
T Consensus       142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~  189 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS  189 (331)
T ss_dssp             TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred             cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence             25899999988887432          35789999999999988754

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.30  E-value=1.4e-06  Score=66.61  Aligned_cols=90  Identities=9%  Similarity=-0.072  Sum_probs=69.1

Q ss_pred             CCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC---
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY---   99 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~---   99 (165)
                      ..+.+.|+ +|||.++...|+.+.+|+|+|.+|..++.|.  +.--|..|++++.||+..--.  ...|.|+|---.   
T Consensus        32 a~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaL  109 (252)
T COG4076          32 AEDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTAL  109 (252)
T ss_pred             hhhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHh
Confidence            35899999 9999999999999999999999999999995  545678899999999975222  356888774221   


Q ss_pred             ---CCch--HHHHhccccCcEEE
Q psy8015         100 ---PRYP--EIFIHHLKSGGRLV  117 (165)
Q Consensus       100 ---~~~p--~~l~~~LkpgG~lv  117 (165)
                         +++|  ....+.||..+.++
T Consensus       110 i~E~qVpV~n~vleFLr~d~tii  132 (252)
T COG4076         110 IEEKQVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             hcccccHHHHHHHHHhhcCCccc
Confidence               1233  35567788887754

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.29  E-value=2.2e-06  Score=66.11  Aligned_cols=97  Identities=11%  Similarity=0.028  Sum_probs=59.8

Q ss_pred             CCCeEEEE-cccc----HHHHHHhcc----CC---cEEEEeCCHHHHHhcc--------cccC-------------C---
Q psy8015          26 KRLDCLAL-TSNT----KQSTTLPTF----IP---NSFNINVYYYLSGGPL--------SSTI-------------D---   69 (165)
Q Consensus        26 ~~~~vLei-~GsG----~~t~~la~~----~~---~V~aiD~~~~~~~~A~--------~~~~-------------~---   69 (165)
                      +.-+||-. |+||    .+|..+...    .+   +++|.|+|+.+++.|+        ++..             |   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            45789999 9999    344444441    23   7999999999999995        2111             1   


Q ss_pred             ------CCCeEEEEccCCCCCCCCCCccEEEEcCCCCCch--------HHHHhccccCcEEEEEecC
Q psy8015          70 ------PDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        70 ------~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~~~  122 (165)
                            .++|+|...|..+..+..+.||+|||-...-.+.        +.+.+.|+|||.|++-..+
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE  177 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSE  177 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence                  2368999999877455568999999987765433        4678999999999996654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.29  E-value=7.4e-07  Score=67.24  Aligned_cols=103  Identities=17%  Similarity=0.056  Sum_probs=66.2

Q ss_pred             chHHHHHHHHHHhcCC-----CCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcccccCCCCCeEEEEccC
Q psy8015          10 VSGAVAKYVTYLSGHS-----KRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADG   80 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~-----~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~   80 (165)
                      ++++.-+|.|.+....     ++.+|||+ |++|.++..+.+..   ++|+|+|+.+.-         ...++..+.+|.
T Consensus         2 vsRa~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---------~~~~~~~i~~d~   72 (181)
T PF01728_consen    2 VSRAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---------PLQNVSFIQGDI   72 (181)
T ss_dssp             SSTHHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---------S-TTEEBTTGGG
T ss_pred             CCHHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc---------cccceeeeeccc
Confidence            4567778888887653     34999999 99999999999987   799999998761         123444444443


Q ss_pred             CC--------C-CC-CCCCccEEEEcCCCCC--ch---------------HHHHhccccCcEEEEEec
Q psy8015          81 RA--------S-FG-DNGPYDAIHVGAAYPR--YP---------------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        81 ~~--------~-~~-~~~~fD~I~i~~~~~~--~p---------------~~l~~~LkpgG~lvi~~~  121 (165)
                      .+        . +. ...+||+|+++++...  .+               .-..+.|+|||.+|+-+-
T Consensus        73 ~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~  140 (181)
T PF01728_consen   73 TNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF  140 (181)
T ss_dssp             EEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred             chhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence            21        1 11 1258999999985431  11               113578999999888653

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG3420|consensus

Probab=98.28  E-value=1.7e-06  Score=63.54  Aligned_cols=89  Identities=8%  Similarity=-0.073  Sum_probs=69.6

Q ss_pred             hHHHHHHHHHHhcC---CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC
Q psy8015          11 SGAVAKYVTYLSGH---SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS   83 (165)
Q Consensus        11 ~~~~~~~l~~l~~~---~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~   83 (165)
                      |...+-|++.+..-   -.|++++|+ ||+|-++...+... ..|.++|++|+.+++++  .+++.+ |+++.+.|....
T Consensus        30 p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildl  108 (185)
T KOG3420|consen   30 PHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDL  108 (185)
T ss_pred             HHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccch
Confidence            45666777766432   258999999 99999997777665 57999999999999996  444444 679999998776


Q ss_pred             CCCCCCccEEEEcCCCC
Q psy8015          84 FGDNGPYDAIHVGAAYP  100 (165)
Q Consensus        84 ~~~~~~fD~I~i~~~~~  100 (165)
                      -+..+.||..+++..+.
T Consensus       109 e~~~g~fDtaviNppFG  125 (185)
T KOG3420|consen  109 ELKGGIFDTAVINPPFG  125 (185)
T ss_pred             hccCCeEeeEEecCCCC
Confidence            66678999999987654

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.25  E-value=2.6e-06  Score=66.42  Aligned_cols=94  Identities=15%  Similarity=0.092  Sum_probs=63.9

Q ss_pred             CCCeEEEE-ccccHHHH-HHhccCCcEEEEeCCHHHHHhcc--cccCCCCCe-EEEEccCCCCC-CCCCCccEEEEcCCC
Q psy8015          26 KRLDCLAL-TSNTKQST-TLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHD-YDLIADGRASF-GDNGPYDAIHVGAAY   99 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~-~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV-~~~~gD~~~~~-~~~~~fD~I~i~~~~   99 (165)
                      +..++||. +|.|-+|. .|.+.+.+|.-+|..++.++.|+  +.. +...+ ++.+. +.+.+ |+..+||+|-+-...
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~-~~~~v~~~~~~-gLQ~f~P~~~~YDlIW~QW~l  132 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGK-DNPRVGEFYCV-GLQDFTPEEGKYDLIWIQWCL  132 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCC-GGCCEEEEEES--GGG----TT-EEEEEEES-G
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcc-cCCCcceEEec-CHhhccCCCCcEeEEEehHhh
Confidence            46899999 99999996 66788899999999999999997  322 12343 44444 34445 445799999999888


Q ss_pred             CCchH--------HHHhccccCcEEEEEec
Q psy8015         100 PRYPE--------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       100 ~~~p~--------~l~~~LkpgG~lvi~~~  121 (165)
                      .++.+        .|.+.|+|||.+++=.+
T Consensus       133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN  162 (218)
T PF05891_consen  133 GHLTDEDLVAFLKRCKQALKPNGVIVVKEN  162 (218)
T ss_dssp             GGS-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHhCcCCcEEEEEec
Confidence            77765        57899999999998543

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.24  E-value=1.3e-05  Score=65.04  Aligned_cols=107  Identities=10%  Similarity=0.061  Sum_probs=78.2

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHH-HHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCe-EEEEccCCCC--
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQST-TLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHD-YDLIADGRAS--   83 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~-~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV-~~~~gD~~~~--   83 (165)
                      ..+-++.|......-+|||| ||.|-.-. .+...-   .+|.-.|.++..++..+  .++.|+.++ +|.++|+++.  
T Consensus       123 i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~  202 (311)
T PF12147_consen  123 IRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDS  202 (311)
T ss_pred             HHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhH
Confidence            33444445433466899999 99995433 333322   47888999999999987  677899986 9999999763  


Q ss_pred             CCC-CCCccEEEEcCCCCCchH---------HHHhccccCcEEEEEe
Q psy8015          84 FGD-NGPYDAIHVGAAYPRYPE---------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        84 ~~~-~~~fD~I~i~~~~~~~p~---------~l~~~LkpgG~lvi~~  120 (165)
                      +.. ...+|.+++++-.+.+|+         .+.+.+.|||.|+..-
T Consensus       203 l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg  249 (311)
T PF12147_consen  203 LAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG  249 (311)
T ss_pred             hhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence            322 235799999999887775         3567899999998854

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.22  E-value=6e-06  Score=72.12  Aligned_cols=98  Identities=16%  Similarity=0.075  Sum_probs=78.1

Q ss_pred             CCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCC--CCCCCCCccEEEEcCC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRA--SFGDNGPYDAIHVGAA   98 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~--~~~~~~~fD~I~i~~~   98 (165)
                      .+..+||| ||.|-++..+|..-  ..++++|++...+..|.  .++.++.|+.++.+|+..  ...+.+++|.|++...
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP  426 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP  426 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence            47889999 99999999999886  47999999999888873  566789999999988742  1223578999999877


Q ss_pred             CCCc-----------h---HHHHhccccCcEEEEEecCC
Q psy8015          99 YPRY-----------P---EIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        99 ~~~~-----------p---~~l~~~LkpgG~lvi~~~~~  123 (165)
                      .|+.           |   +.+.+.|||||.+.+..+..
T Consensus       427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~  465 (506)
T PRK01544        427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIE  465 (506)
T ss_pred             CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence            6632           1   35789999999999876643

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.21  E-value=8.4e-06  Score=63.78  Aligned_cols=107  Identities=18%  Similarity=0.116  Sum_probs=72.7

Q ss_pred             hHHHHHHHHHHh--cCCCCCeEEEE-ccccHHHHHHhccCC---cEEEEeCCHHHHH----hcccccCCCCCeEEEEccC
Q psy8015          11 SGAVAKYVTYLS--GHSKRLDCLAL-TSNTKQSTTLPTFIP---NSFNINVYYYLSG----GPLSSTIDPDHDYDLIADG   80 (165)
Q Consensus        11 ~~~~~~~l~~l~--~~~~~~~vLei-~GsG~~t~~la~~~~---~V~aiD~~~~~~~----~A~~~~~~~~nV~~~~gD~   80 (165)
                      |-..|.++.-+.  .+++|.+||=+ +++|..-.++|.+++   .|+|+|.++...+    .|+.    .+||--+.+||
T Consensus        56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~----R~NIiPIl~DA  131 (229)
T PF01269_consen   56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK----RPNIIPILEDA  131 (229)
T ss_dssp             -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH----STTEEEEES-T
T ss_pred             hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc----CCceeeeeccC
Confidence            334444443332  23789999999 999999999999875   8999999996554    4432    36999999999


Q ss_pred             CCCCC---CCCCccEEEEcCCCCCch----HHHHhccccCcEEEEEec
Q psy8015          81 RASFG---DNGPYDAIHVGAAYPRYP----EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        81 ~~~~~---~~~~fD~I~i~~~~~~~p----~~l~~~LkpgG~lvi~~~  121 (165)
                      .....   --+..|+||.+-+-++-.    ......||+||.+++.+-
T Consensus       132 r~P~~Y~~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iK  179 (229)
T PF01269_consen  132 RHPEKYRMLVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISIK  179 (229)
T ss_dssp             TSGGGGTTTS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CChHHhhcccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence            75321   125899999998866433    345578999999999863

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=98.20  E-value=1.8e-07  Score=64.53  Aligned_cols=87  Identities=16%  Similarity=0.175  Sum_probs=38.3

Q ss_pred             EEE-ccccHHHHHHhccC-----CcEEEEeCCHHHHHhc-c-cccCCC-CCeEEEEccCCCCCCC--CCCccEEEEcCCC
Q psy8015          31 LAL-TSNTKQSTTLPTFI-----PNSFNINVYYYLSGGP-L-SSTIDP-DHDYDLIADGRASFGD--NGPYDAIHVGAAY   99 (165)
Q Consensus        31 Lei-~GsG~~t~~la~~~-----~~V~aiD~~~~~~~~A-~-~~~~~~-~nV~~~~gD~~~~~~~--~~~fD~I~i~~~~   99 (165)
                      ||+ |..|+.|.++++..     ++++++|..+. .+.+ + .++.++ ++++++.+|..+.++.  ..+||.+++++.-
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H   79 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH   79 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence            689 88999999998864     27999999995 2222 1 333344 3699999998653322  3689999999863


Q ss_pred             C--C---chHHHHhccccCcEEEE
Q psy8015         100 P--R---YPEIFIHHLKSGGRLVI  118 (165)
Q Consensus       100 ~--~---~p~~l~~~LkpgG~lvi  118 (165)
                      .  .   .-+.+.+.|+|||.+++
T Consensus        80 ~~~~~~~dl~~~~~~l~~ggviv~  103 (106)
T PF13578_consen   80 SYEAVLRDLENALPRLAPGGVIVF  103 (106)
T ss_dssp             -HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCeEEEE
Confidence            2  1   12457889999998876

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.19  E-value=1.4e-05  Score=72.37  Aligned_cols=113  Identities=8%  Similarity=-0.015  Sum_probs=79.7

Q ss_pred             hHHHHHHHHHHhcC-CCCCeEEEE-ccccHHHHHHhccC-----------------------------------------
Q psy8015          11 SGAVAKYVTYLSGH-SKRLDCLAL-TSNTKQSTTLPTFI-----------------------------------------   47 (165)
Q Consensus        11 ~~~~~~~l~~l~~~-~~~~~vLei-~GsG~~t~~la~~~-----------------------------------------   47 (165)
                      +...+.|+.+. .. .++..++|. ||||.+.++.|...                                         
T Consensus       175 etlAaa~l~~a-~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~  253 (702)
T PRK11783        175 ENLAAAILLRS-GWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA  253 (702)
T ss_pred             HHHHHHHHHHc-CCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence            34455666543 43 568999999 99999987776421                                         


Q ss_pred             ---CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCCC--CCCccEEEEcCCCC-Cch--H-------H---H
Q psy8015          48 ---PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFGD--NGPYDAIHVGAAYP-RYP--E-------I---F  106 (165)
Q Consensus        48 ---~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~~--~~~fD~I~i~~~~~-~~p--~-------~---l  106 (165)
                         .+++++|+++++++.|+  ++.+|+.+ +++.++|+.+....  .+.||+|+++..+. .+.  +       .   .
T Consensus       254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~  333 (702)
T PRK11783        254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRR  333 (702)
T ss_pred             ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHH
Confidence               25999999999999996  66778765 99999998764322  24699999986653 221  1       1   2


Q ss_pred             HhccccCcEEEEEecCCC
Q psy8015         107 IHHLKSGGRLVIPIGDTK  124 (165)
Q Consensus       107 ~~~LkpgG~lvi~~~~~~  124 (165)
                      ++...+|+++++..++..
T Consensus       334 lk~~~~g~~~~llt~~~~  351 (702)
T PRK11783        334 LKQQFGGWNAALFSSSPE  351 (702)
T ss_pred             HHHhCCCCeEEEEeCCHH
Confidence            344459999998887543

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.18  E-value=3.2e-06  Score=66.06  Aligned_cols=94  Identities=12%  Similarity=0.018  Sum_probs=74.2

Q ss_pred             CCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCC-ccEEEEcCCCC
Q psy8015          27 RLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGP-YDAIHVGAAYP  100 (165)
Q Consensus        27 ~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~-fD~I~i~~~~~  100 (165)
                      +.+++|| +|.|.=+..||=..  .+|+-+|...+-+..-+  .+++|++|++++++.+.+-..+ .+ ||+|.+-+..+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~-~~~~D~vtsRAva~  146 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE-KKQYDVVTSRAVAS  146 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc-cccCcEEEeehccc
Confidence            5899999 99999999888332  46999999998888876  6778999999999998764432 23 99988865443


Q ss_pred             --CchHHHHhccccCcEEEEEec
Q psy8015         101 --RYPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       101 --~~p~~l~~~LkpgG~lvi~~~  121 (165)
                        .+-+-+...||+||.+++..+
T Consensus       147 L~~l~e~~~pllk~~g~~~~~k~  169 (215)
T COG0357         147 LNVLLELCLPLLKVGGGFLAYKG  169 (215)
T ss_pred             hHHHHHHHHHhcccCCcchhhhH
Confidence              455677899999999876544

>KOG1500|consensus

Probab=98.14  E-value=7.1e-06  Score=67.86  Aligned_cols=137  Identities=13%  Similarity=0.054  Sum_probs=88.2

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCC-CCCCCCCccEEEEcCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRA-SFGDNGPYDAIHVGAA   98 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~-~~~~~~~fD~I~i~~~   98 (165)
                      ..++.|||+ ||+|.++...|..+ ++|+++|.++ |++.||  .+...+ +++.++.|...+ .+|  ++.|+|+....
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP--Ek~DviISEPM  252 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELP--EKVDVIISEPM  252 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCc--hhccEEEeccc
Confidence            368899999 99999998887765 7999999875 999997  333333 569999998876 334  57898877543


Q ss_pred             CC-----CchH---HHHhccccCcEEEEEecCCCc-----eEEEEEEEccCCcEEEEEeeeEEEeeeccC--CCCCCCCC
Q psy8015          99 YP-----RYPE---IFIHHLKSGGRLVIPIGDTKQ-----QMLTIYDKFHNGTIDIQHWGVVQVGLLYDV--KAGYSMPI  163 (165)
Q Consensus        99 ~~-----~~p~---~l~~~LkpgG~lvi~~~~~~~-----~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~--~~~~~~~~  163 (165)
                      -.     .+.+   ...+.|+|.|.++=.+++...     ..+..=.-+...=|-......++..||.+.  ..-|+.||
T Consensus       253 G~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPv  332 (517)
T KOG1500|consen  253 GYMLVNERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPV  332 (517)
T ss_pred             hhhhhhHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhcccc
Confidence            22     2233   235899999999876664320     011100001122344555556777777763  23466776


Q ss_pred             C
Q psy8015         164 I  164 (165)
Q Consensus       164 ~  164 (165)
                      .
T Consensus       333 V  333 (517)
T KOG1500|consen  333 V  333 (517)
T ss_pred             c
Confidence            4

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.12  E-value=3.4e-05  Score=62.21  Aligned_cols=96  Identities=11%  Similarity=0.011  Sum_probs=69.1

Q ss_pred             CCeEEEE-cccc----HHHHHHhccCC-------cEEEEeCCHHHHHhcc---cc------cC--------------C--
Q psy8015          27 RLDCLAL-TSNT----KQSTTLPTFIP-------NSFNINVYYYLSGGPL---SS------TI--------------D--   69 (165)
Q Consensus        27 ~~~vLei-~GsG----~~t~~la~~~~-------~V~aiD~~~~~~~~A~---~~------~~--------------~--   69 (165)
                      .-+||-+ |+||    .+|..|.+..+       +|+|.|+|..+++.|+   ..      ..              |  
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            5689999 9999    34444444331       6999999999999995   11      10              1  


Q ss_pred             ------CCCeEEEEccCCCCCCCCCCccEEEEcCCCCC--------chHHHHhccccCcEEEEEecC
Q psy8015          70 ------PDHDYDLIADGRASFGDNGPYDAIHVGAAYPR--------YPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        70 ------~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~--------~p~~l~~~LkpgG~lvi~~~~  122 (165)
                            .++|.|...|.....+..+.||+|||-...-.        +-+.+...|+|||.|++-..+
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE  243 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSE  243 (268)
T ss_pred             EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCc
Confidence                  13578888887765534578999999876543        335688999999999996654

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.12  E-value=1.4e-05  Score=67.11  Aligned_cols=106  Identities=11%  Similarity=0.005  Sum_probs=76.5

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC-----------------------------------------cEEE
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP-----------------------------------------NSFN   52 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~-----------------------------------------~V~a   52 (165)
                      +.|+.+ ..-.++..++|- ||||.+.++.|.+..                                         ..++
T Consensus       181 aAil~l-agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G  259 (381)
T COG0116         181 AAILLL-AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG  259 (381)
T ss_pred             HHHHHH-cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence            344443 344778899999 999999988887653                                         3789


Q ss_pred             EeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCCCCCCccEEEEcCCCC-Cch-----H--------HHHhccccCcE
Q psy8015          53 INVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFGDNGPYDAIHVGAAYP-RYP-----E--------IFIHHLKSGGR  115 (165)
Q Consensus        53 iD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~~~~~fD~I~i~~~~~-~~p-----~--------~l~~~LkpgG~  115 (165)
                      +|+|+++++.|+  .+++|... |+|.++|+...-++.+.+|+|+++.... .+.     +        .+.+.++--++
T Consensus       260 ~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~  339 (381)
T COG0116         260 SDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSR  339 (381)
T ss_pred             ecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCce
Confidence            999999999996  67788765 9999999976433337899999987653 121     1        34456665566


Q ss_pred             EEEEec
Q psy8015         116 LVIPIG  121 (165)
Q Consensus       116 lvi~~~  121 (165)
                      .++.-.
T Consensus       340 ~v~tt~  345 (381)
T COG0116         340 YVFTTS  345 (381)
T ss_pred             EEEEcc
Confidence            666443

>KOG3191|consensus

Probab=98.11  E-value=2.7e-05  Score=59.22  Aligned_cols=96  Identities=14%  Similarity=0.066  Sum_probs=71.3

Q ss_pred             CCeEEEE-ccccHHHHHHhccCC---cEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015          27 RLDCLAL-TSNTKQSTTLPTFIP---NSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP  100 (165)
Q Consensus        27 ~~~vLei-~GsG~~t~~la~~~~---~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~  100 (165)
                      ..-++|| ||||+.+..|++..+   ...+.|+||++++..+  .+..+ -++..++.|...++.+ ++.|+++.+..+-
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~-~~~~~V~tdl~~~l~~-~~VDvLvfNPPYV  121 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR-VHIDVVRTDLLSGLRN-ESVDVLVFNPPYV  121 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC-CccceeehhHHhhhcc-CCccEEEECCCcC
Confidence            6889999 999999999998753   5789999999999764  33222 3578899998877765 8899999975431


Q ss_pred             -----Cch------------------H----HHHhccccCcEEEEEecCCC
Q psy8015         101 -----RYP------------------E----IFIHHLKSGGRLVIPIGDTK  124 (165)
Q Consensus       101 -----~~p------------------~----~l~~~LkpgG~lvi~~~~~~  124 (165)
                           .+.                  +    .+-+.|.|.|.++...-..+
T Consensus       122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N  172 (209)
T KOG3191|consen  122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN  172 (209)
T ss_pred             cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence                 121                  1    13356789999999876544

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.09  E-value=2.1e-05  Score=68.84  Aligned_cols=74  Identities=7%  Similarity=-0.061  Sum_probs=50.0

Q ss_pred             CCCeEEEE-ccccHHHHHHhccC----------CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC---C--CCC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFI----------PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS---F--GDN   87 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~----------~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~---~--~~~   87 (165)
                      ...+|||. ||+|.+...++...          ..++++|+++.+++.|+  +...+..+..+..+|....   .  ...
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~  110 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL  110 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence            34699999 99999987776532          36899999999999996  3333322345555553321   1  113


Q ss_pred             CCccEEEEcCCC
Q psy8015          88 GPYDAIHVGAAY   99 (165)
Q Consensus        88 ~~fD~I~i~~~~   99 (165)
                      +.||+|+.+...
T Consensus       111 ~~fD~IIgNPPy  122 (524)
T TIGR02987       111 DLFDIVITNPPY  122 (524)
T ss_pred             CcccEEEeCCCc
Confidence            579999998543

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG1122|consensus

Probab=98.05  E-value=1.2e-05  Score=67.95  Aligned_cols=97  Identities=15%  Similarity=0.110  Sum_probs=76.1

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC-CC-CCCccEEEEc
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF-GD-NGPYDAIHVG   96 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~-~~-~~~fD~I~i~   96 (165)
                      +||.||||. +..|-=|.++|.+.   |.|+|.|.+...++..+  +.++|..|-.+...|+.+.. .. .++||+|+++
T Consensus       240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVLLD  319 (460)
T KOG1122|consen  240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVLLD  319 (460)
T ss_pred             CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccceeeec
Confidence            789999999 99998888888876   68999999999998764  78899999888889985311 01 1379999999


Q ss_pred             CCCCC--ch--------------------------HHHHhccccCcEEEEEec
Q psy8015          97 AAYPR--YP--------------------------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        97 ~~~~~--~p--------------------------~~l~~~LkpgG~lvi~~~  121 (165)
                      +.+.-  +.                          ....+++++||+||...-
T Consensus       320 APCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC  372 (460)
T KOG1122|consen  320 APCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC  372 (460)
T ss_pred             CCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence            76642  11                          124689999999998743

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=98.00  E-value=1.2e-05  Score=61.90  Aligned_cols=96  Identities=10%  Similarity=0.009  Sum_probs=63.7

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHH----HHHhcc----cccCCCCCeEEEEccCCCCCCCCCCcc
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYY----LSGGPL----SSTIDPDHDYDLIADGRASFGDNGPYD   91 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~----~~~~A~----~~~~~~~nV~~~~gD~~~~~~~~~~fD   91 (165)
                      .+|+++|.|+ .|.||+|..++..+   +.|+++--++-    ..+..+    .++....|++.+-.+.....+ ....|
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~-pq~~d  124 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGA-PQKLD  124 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCC-CCccc
Confidence            3789999999 99999999999986   57888743332    111111    222345678877777654333 34567


Q ss_pred             EEEEcCCCCCc-----h--------HHHHhccccCcEEEEEe
Q psy8015          92 AIHVGAAYPRY-----P--------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        92 ~I~i~~~~~~~-----p--------~~l~~~LkpgG~lvi~~  120 (165)
                      .+.-....+.+     +        ..+++.|||||.+++..
T Consensus       125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d  166 (238)
T COG4798         125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED  166 (238)
T ss_pred             ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence            66664444322     1        25789999999998864

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.98  E-value=5.9e-05  Score=62.66  Aligned_cols=107  Identities=13%  Similarity=0.038  Sum_probs=75.6

Q ss_pred             CchHHHHHHHHHHhcC----------CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEE
Q psy8015           9 SVSGAVAKYVTYLSGH----------SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLI   77 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~~----------~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~   77 (165)
                      -.|+..-|+.+.+...          .+|+++||+ |++|.+|-.|.+...+|+|||..+ |...  +  ...++|+...
T Consensus       184 apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~~~--L--~~~~~V~h~~  258 (357)
T PRK11760        184 APSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MAQS--L--MDTGQVEHLR  258 (357)
T ss_pred             CCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cCHh--h--hCCCCEEEEe
Confidence            3567777887774322          479999999 999999999999988999999544 3321  2  2346799999


Q ss_pred             ccCCCCCCCCCCccEEEEcCCCC--CchHHHHhccccC--cEEEEEe
Q psy8015          78 ADGRASFGDNGPYDAIHVGAAYP--RYPEIFIHHLKSG--GRLVIPI  120 (165)
Q Consensus        78 gD~~~~~~~~~~fD~I~i~~~~~--~~p~~l~~~Lkpg--G~lvi~~  120 (165)
                      +|+....+..+++|.++++....  .+-+-+.++|..|  ...|+.+
T Consensus       259 ~d~fr~~p~~~~vDwvVcDmve~P~rva~lm~~Wl~~g~cr~aIfnL  305 (357)
T PRK11760        259 ADGFKFRPPRKNVDWLVCDMVEKPARVAELMAQWLVNGWCREAIFNL  305 (357)
T ss_pred             ccCcccCCCCCCCCEEEEecccCHHHHHHHHHHHHhcCcccEEEEEE
Confidence            99977555467899999987643  2233344555554  4556554

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.98  E-value=2.7e-05  Score=59.86  Aligned_cols=93  Identities=11%  Similarity=0.015  Sum_probs=71.4

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP  100 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~  100 (165)
                      -.+++|||. +|+|-.+...++.+ ..|++.|++|...+.++  .+..| .++.+...|...   +...||+++.+..+-
T Consensus        78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang-v~i~~~~~d~~g---~~~~~Dl~LagDlfy  153 (218)
T COG3897          78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG-VSILFTHADLIG---SPPAFDLLLAGDLFY  153 (218)
T ss_pred             cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc-ceeEEeeccccC---CCcceeEEEeeceec
Confidence            469999999 99999999888876 68999999999998876  33333 478888888753   346799999986653


Q ss_pred             Cch-----HHHHhccccCcEEEEEec
Q psy8015         101 RYP-----EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       101 ~~p-----~~l~~~LkpgG~lvi~~~  121 (165)
                      +-+     -.|+..|+..|.-|++-.
T Consensus       154 ~~~~a~~l~~~~~~l~~~g~~vlvgd  179 (218)
T COG3897         154 NHTEADRLIPWKDRLAEAGAAVLVGD  179 (218)
T ss_pred             CchHHHHHHHHHHHHHhCCCEEEEeC
Confidence            222     238889999998888443

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.96  E-value=9.2e-05  Score=57.38  Aligned_cols=103  Identities=16%  Similarity=0.054  Sum_probs=76.7

Q ss_pred             chHHHHHHHHHHhcC---CCCCeEEEE-ccccHHHHHHhccCC---cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC
Q psy8015          10 VSGAVAKYVTYLSGH---SKRLDCLAL-TSNTKQSTTLPTFIP---NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA   82 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~---~~~~~vLei-~GsG~~t~~la~~~~---~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~   82 (165)
                      -+++.-+++|+...+   +++++|+|+ +..|..+..+++.++   +|+++|+.|=       +  -..+|.++++|...
T Consensus        26 RSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-------~--~~~~V~~iq~d~~~   96 (205)
T COG0293          26 RSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-------K--PIPGVIFLQGDITD   96 (205)
T ss_pred             cchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-------c--cCCCceEEeeeccC
Confidence            356777888887655   689999999 999999999999875   4999999771       1  24579999999764


Q ss_pred             CC--------CCCCCccEEEEcCCCC--------Cc---------hHHHHhccccCcEEEEEec
Q psy8015          83 SF--------GDNGPYDAIHVGAAYP--------RY---------PEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        83 ~~--------~~~~~fD~I~i~~~~~--------~~---------p~~l~~~LkpgG~lvi~~~  121 (165)
                      .-        ....++|+|.++.+..        +.         ++-..+.|+|||.+++-.=
T Consensus        97 ~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f  160 (205)
T COG0293          97 EDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF  160 (205)
T ss_pred             ccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence            21        1124579999987763        11         1224679999999999763

>KOG2361|consensus

Probab=97.95  E-value=1.5e-05  Score=63.06  Aligned_cols=92  Identities=16%  Similarity=0.077  Sum_probs=64.8

Q ss_pred             CeEEEE-ccccHHHHHHhccCC----cEEEEeCCHHHHHhcc-cccCCCCCeEEEEccCCC----CCCCCCCccEEEEcC
Q psy8015          28 LDCLAL-TSNTKQSTTLPTFIP----NSFNINVYYYLSGGPL-SSTIDPDHDYDLIADGRA----SFGDNGPYDAIHVGA   97 (165)
Q Consensus        28 ~~vLei-~GsG~~t~~la~~~~----~V~aiD~~~~~~~~A~-~~~~~~~nV~~~~gD~~~----~~~~~~~fD~I~i~~   97 (165)
                      .++||| ||.|-..-.+-+...    +|++.|.+|++++..+ -.....+++.-.+.|...    ...+.+.+|.|.+-.
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF  152 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF  152 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence            379999 999988876666542    6999999999999886 222223445555555432    223457899887765


Q ss_pred             CCCCch--------HHHHhccccCcEEEEE
Q psy8015          98 AYPRYP--------EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        98 ~~~~~p--------~~l~~~LkpgG~lvi~  119 (165)
                      .+..++        +.+.+.|||||.|++=
T Consensus       153 vLSAi~pek~~~a~~nl~~llKPGG~llfr  182 (264)
T KOG2361|consen  153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFR  182 (264)
T ss_pred             EEeccChHHHHHHHHHHHHHhCCCcEEEEe
Confidence            555443        4688999999999884

>KOG2671|consensus

Probab=97.81  E-value=3.3e-05  Score=63.94  Aligned_cols=113  Identities=16%  Similarity=0.118  Sum_probs=82.4

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhc---------ccccCCCC-C-eEEEE
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGP---------LSSTIDPD-H-DYDLI   77 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A---------~~~~~~~~-n-V~~~~   77 (165)
                      -++...-+..-+...+||+.|+|- .|||.+-...|+.+..|++.|+|-.+++..         ++++.|.. . +.+..
T Consensus       192 mDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~  271 (421)
T KOG2671|consen  192 MDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLT  271 (421)
T ss_pred             cchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheee
Confidence            334444444444445899999999 999999998999999999999999999832         35666643 3 78888


Q ss_pred             ccCCC-CCCCCCCccEEEEcCCCC------------------------CchH---------------HHHhccccCcEEE
Q psy8015          78 ADGRA-SFGDNGPYDAIHVGAAYP------------------------RYPE---------------IFIHHLKSGGRLV  117 (165)
Q Consensus        78 gD~~~-~~~~~~~fD~I~i~~~~~------------------------~~p~---------------~l~~~LkpgG~lv  117 (165)
                      +|-.. +|.....||+|+++....                        ++|.               -+.+.|..||||+
T Consensus       272 ~D~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv  351 (421)
T KOG2671|consen  272 ADFSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLV  351 (421)
T ss_pred             ecccCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEE
Confidence            99765 555567899999984321                        1221               1468999999999


Q ss_pred             EEecC
Q psy8015         118 IPIGD  122 (165)
Q Consensus       118 i~~~~  122 (165)
                      .-.++
T Consensus       352 ~w~p~  356 (421)
T KOG2671|consen  352 FWLPT  356 (421)
T ss_pred             EecCc
Confidence            96653

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.81  E-value=0.00019  Score=49.29  Aligned_cols=92  Identities=13%  Similarity=0.073  Sum_probs=62.9

Q ss_pred             EEEE-ccccHHHHHHhccCC---cEEEEeCCHHHHHhccccc--CCCCCeEEEEccCCCC-CCCC--CCccEEEEcCCCC
Q psy8015          30 CLAL-TSNTKQSTTLPTFIP---NSFNINVYYYLSGGPLSST--IDPDHDYDLIADGRAS-FGDN--GPYDAIHVGAAYP  100 (165)
Q Consensus        30 vLei-~GsG~~t~~la~~~~---~V~aiD~~~~~~~~A~~~~--~~~~nV~~~~gD~~~~-~~~~--~~fD~I~i~~~~~  100 (165)
                      ++|+ ||+|..+ .++....   .++++|.++.+++.++...  .+..++.+..+|.... .+-.  ..||.+.......
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  130 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH  130 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence            9999 9999976 5555543   7999999999999865322  2221268888887652 3322  3799993333332


Q ss_pred             -----CchHHHHhccccCcEEEEEecC
Q psy8015         101 -----RYPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus       101 -----~~p~~l~~~LkpgG~lvi~~~~  122 (165)
                           .....+.+.|+|+|.+++....
T Consensus       131 ~~~~~~~~~~~~~~l~~~g~~~~~~~~  157 (257)
T COG0500         131 LLPPAKALRELLRVLKPGGRLVLSDLL  157 (257)
T ss_pred             cCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence                 2335678999999999887654

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.81  E-value=5.7e-05  Score=62.72  Aligned_cols=89  Identities=16%  Similarity=0.058  Sum_probs=66.3

Q ss_pred             CCCCCeEEEE--ccccHHHHHHhc-cCCcEEEEeCCHHHHHhcccccCCCCCeEEEEc-cC--CCCCCCCCCccEEEEcC
Q psy8015          24 HSKRLDCLAL--TSNTKQSTTLPT-FIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIA-DG--RASFGDNGPYDAIHVGA   97 (165)
Q Consensus        24 ~~~~~~vLei--~GsG~~t~~la~-~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g-D~--~~~~~~~~~fD~I~i~~   97 (165)
                      .+||++|+=+  .|.|.++..+|+ +..+|+++|++++-.+.|+  ++|.+.  ++.+ |.  .+...  +.||.|+...
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~--~lGAd~--~i~~~~~~~~~~~~--~~~d~ii~tv  237 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK--KLGADH--VINSSDSDALEAVK--EIADAIIDTV  237 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH--HhCCcE--EEEcCCchhhHHhH--hhCcEEEECC
Confidence            4789999999  667789999998 4579999999999999885  345432  2332 22  11112  2499999988


Q ss_pred             CCCCchHHHHhccccCcEEEEE
Q psy8015          98 AYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        98 ~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      . +.-.+...+.||+||++++.
T Consensus       238 ~-~~~~~~~l~~l~~~G~~v~v  258 (339)
T COG1064         238 G-PATLEPSLKALRRGGTLVLV  258 (339)
T ss_pred             C-hhhHHHHHHHHhcCCEEEEE
Confidence            8 66666677999999999985

>KOG2730|consensus

Probab=97.79  E-value=3e-05  Score=60.62  Aligned_cols=73  Identities=8%  Similarity=-0.050  Sum_probs=59.9

Q ss_pred             CCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCC----CCCCccEEEEcC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFG----DNGPYDAIHVGA   97 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~----~~~~fD~I~i~~   97 (165)
                      ....++|. ||.|-.|..+|..+..|+++|+||--+..||  ++-.|+++ |+|++||......    ....+|++|.++
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp  173 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP  173 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence            46889999 9999999999999999999999999999996  77778865 9999999754221    234577888875


Q ss_pred             C
Q psy8015          98 A   98 (165)
Q Consensus        98 ~   98 (165)
                      .
T Consensus       174 p  174 (263)
T KOG2730|consen  174 P  174 (263)
T ss_pred             C
Confidence            4

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.79  E-value=0.00015  Score=60.71  Aligned_cols=98  Identities=13%  Similarity=0.143  Sum_probs=75.2

Q ss_pred             CCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc----cccC-----CCCCeEEEEccCCCCCC-CCCCccE
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL----SSTI-----DPDHDYDLIADGRASFG-DNGPYDA   92 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~----~~~~-----~~~nV~~~~gD~~~~~~-~~~~fD~   92 (165)
                      ...+||-+ -|.|--...+-+.  ..+++-+|.||+|++.++    ++..     .-++|+++..|+.+-+. ..+.||.
T Consensus       289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~  368 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV  368 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence            45789999 9999888888765  579999999999999996    2222     23459999999976222 2358999


Q ss_pred             EEEcCCCCCchH-----------HHHhccccCcEEEEEecCC
Q psy8015          93 IHVGAAYPRYPE-----------IFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        93 I~i~~~~~~~p~-----------~l~~~LkpgG~lvi~~~~~  123 (165)
                      |+++-..|+-|.           -+.+.|+++|++|+..+..
T Consensus       369 vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~  410 (508)
T COG4262         369 VIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP  410 (508)
T ss_pred             EEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence            999877665442           3578999999999987753

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.79  E-value=0.00016  Score=55.97  Aligned_cols=107  Identities=17%  Similarity=0.138  Sum_probs=79.2

Q ss_pred             HHHHHHHHHh--cCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC
Q psy8015          13 AVAKYVTYLS--GHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG   85 (165)
Q Consensus        13 ~~~~~l~~l~--~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~   85 (165)
                      ..|.++.-|.  .++++.+||=+ +.+|....+.|.++  |.++++|.++++.+.--  ++  ..+|+--+.+||..+..
T Consensus        61 LaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~--~R~Ni~PIL~DA~~P~~  138 (231)
T COG1889          61 LAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAE--KRPNIIPILEDARKPEK  138 (231)
T ss_pred             HHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHH--hCCCceeeecccCCcHH
Confidence            3444444443  24789999999 99999999999987  58999999998877542  22  24688999999975322


Q ss_pred             C---CCCccEEEEcCCCCCch----HHHHhccccCcEEEEEec
Q psy8015          86 D---NGPYDAIHVGAAYPRYP----EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        86 ~---~~~fD~I~i~~~~~~~p----~~l~~~LkpgG~lvi~~~  121 (165)
                      -   -+..|+||.+-+-++-.    ......||+||.+++.+-
T Consensus       139 Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iK  181 (231)
T COG1889         139 YRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAIK  181 (231)
T ss_pred             hhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEEE
Confidence            1   25789999998877533    345567999998888763

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.76  E-value=3.9e-05  Score=59.60  Aligned_cols=71  Identities=10%  Similarity=-0.009  Sum_probs=53.1

Q ss_pred             EEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015          30 CLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGPYDAIHVGAAYP  100 (165)
Q Consensus        30 vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~fD~I~i~~~~~  100 (165)
                      |+|| |-=||+...|.+..  .+|+++|+++.-++.|+  +++.|+. +++++.+|+.+.+++.+..|.|++.|.-.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG   77 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG   77 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH
Confidence            6899 99999999999865  58999999999999996  6777765 49999999988776655589999987554

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.72  E-value=9.5e-05  Score=57.44  Aligned_cols=107  Identities=14%  Similarity=0.019  Sum_probs=64.2

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc-----c----ccCC--CCCeEEE
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL-----S----STID--PDHDYDL   76 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~-----~----~~~~--~~nV~~~   76 (165)
                      +..+.++++.+. +++++.++|+ ||.|-.....|-.  +.++++||+.+...+.|+     +    +.+|  ..++++.
T Consensus        28 ~~~~~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~  106 (205)
T PF08123_consen   28 PEFVSKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELI  106 (205)
T ss_dssp             HHHHHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEE
T ss_pred             HHHHHHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceee
Confidence            456778888874 5899999999 9999877655543  578999999999999884     1    1234  3468889


Q ss_pred             EccCCCCC-CC--CCCccEEEEcCCCC--Cch---HHHHhccccCcEEEE
Q psy8015          77 IADGRASF-GD--NGPYDAIHVGAAYP--RYP---EIFIHHLKSGGRLVI  118 (165)
Q Consensus        77 ~gD~~~~~-~~--~~~fD~I~i~~~~~--~~p---~~l~~~LkpgG~lvi  118 (165)
                      +||..+.. ..  -..-|+||++...=  .+.   ...+..||+|-++|.
T Consensus       107 ~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  107 HGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIS  156 (205)
T ss_dssp             CS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred             ccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEE
Confidence            99865421 00  13469999987642  222   245678888877664

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.71  E-value=7.3e-05  Score=61.33  Aligned_cols=88  Identities=10%  Similarity=-0.129  Sum_probs=67.5

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC-
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS-   83 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~-   83 (165)
                      +|=+...+++.|.. .++..++|. +|.|.-|..+++..  ++|+++|.|+++++.|+  ++..+ +++++++++-.+. 
T Consensus         5 ~pVll~Evl~~L~~-~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~   82 (305)
T TIGR00006         5 QSVLLDEVVEGLNI-KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFF   82 (305)
T ss_pred             cchhHHHHHHhcCc-CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHH
Confidence            45567788898854 788999999 99999998888764  79999999999999996  44332 4799999985431 


Q ss_pred             --CC--CCCCccEEEEcCCC
Q psy8015          84 --FG--DNGPYDAIHVGAAY   99 (165)
Q Consensus        84 --~~--~~~~fD~I~i~~~~   99 (165)
                        +.  ...++|.|+.+-++
T Consensus        83 ~~l~~~~~~~vDgIl~DLGv  102 (305)
T TIGR00006        83 EHLDELLVTKIDGILVDLGV  102 (305)
T ss_pred             HHHHhcCCCcccEEEEeccC
Confidence              11  22579999998544

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG1975|consensus

Probab=97.70  E-value=8e-05  Score=61.30  Aligned_cols=100  Identities=16%  Similarity=0.062  Sum_probs=70.3

Q ss_pred             CCCCeEEEE-ccccHHHH-HHhccCCcEEEEeCCHHHHHhcc--ccc-CC-----CCCeEEEEccCCC-----CCCCCCC
Q psy8015          25 SKRLDCLAL-TSNTKQST-TLPTFIPNSFNINVYYYLSGGPL--SST-ID-----PDHDYDLIADGRA-----SFGDNGP   89 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~-~la~~~~~V~aiD~~~~~~~~A~--~~~-~~-----~~nV~~~~gD~~~-----~~~~~~~   89 (165)
                      ++++.++++ ||-|-=.. |-.-..++++++|+.+-.+++|+  .+. .+     .-.+.|+.+|...     .++..++
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp  195 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP  195 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence            689999999 99875444 33334589999999999999995  111 11     1248999999753     2222344


Q ss_pred             -ccEEEEcCCCCCc----------hHHHHhccccCcEEEEEecCCC
Q psy8015          90 -YDAIHVGAAYPRY----------PEIFIHHLKSGGRLVIPIGDTK  124 (165)
Q Consensus        90 -fD~I~i~~~~~~~----------p~~l~~~LkpgG~lvi~~~~~~  124 (165)
                       ||+|-+-.+.|.-          ...+.+.|+|||.++..+++..
T Consensus       196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd  241 (389)
T KOG1975|consen  196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD  241 (389)
T ss_pred             CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence             9998887666531          1246799999999999887653

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.66  E-value=0.00025  Score=55.21  Aligned_cols=97  Identities=15%  Similarity=0.126  Sum_probs=59.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCcc
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYD   91 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD   91 (165)
                      .+..++++|....++..|.|+ ||-+.+|..+. ...+|++.|+-..             |-.++..|......+++..|
T Consensus        59 Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~-------------n~~Vtacdia~vPL~~~svD  124 (219)
T PF05148_consen   59 PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP-------------NPRVTACDIANVPLEDESVD  124 (219)
T ss_dssp             HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH---S---EEEEESS-S-------------STTEEES-TTS-S--TT-EE
T ss_pred             cHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc-cCceEEEeeccCC-------------CCCEEEecCccCcCCCCcee
Confidence            466889999765556899999 99998886543 2346999998541             22355677655444568999


Q ss_pred             EEEEcCCC--CCch---HHHHhccccCcEEEEEecCC
Q psy8015          92 AIHVGAAY--PRYP---EIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        92 ~I~i~~~~--~~~p---~~l~~~LkpgG~lvi~~~~~  123 (165)
                      +++++-++  .+++   .+..+.|||||.|.|....+
T Consensus       125 v~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~S  161 (219)
T PF05148_consen  125 VAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKS  161 (219)
T ss_dssp             EEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             EEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecc
Confidence            99998665  3444   46789999999999986543

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.61  E-value=0.00012  Score=52.76  Aligned_cols=53  Identities=6%  Similarity=-0.247  Sum_probs=44.2

Q ss_pred             eEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCC
Q psy8015          29 DCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGR   81 (165)
Q Consensus        29 ~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~   81 (165)
                      .+||+ ||.|+.+..+++...  +|+++|.++++.+.++  ++..+.+|++++.....
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~   58 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG   58 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence            48999 999999999998774  6999999999999885  45556678888887654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.58  E-value=0.00018  Score=56.87  Aligned_cols=79  Identities=8%  Similarity=0.039  Sum_probs=48.4

Q ss_pred             cCCCC--CeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--c----ccCCC-----CCeEEEEccCCCCCC-CC
Q psy8015          23 GHSKR--LDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--S----STIDP-----DHDYDLIADGRASFG-DN   87 (165)
Q Consensus        23 ~~~~~--~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~----~~~~~-----~nV~~~~gD~~~~~~-~~   87 (165)
                      .++++  .+|||. +|-|.=|..+|.++.+|+++|.||-+....+  +    +....     .+++++++|+.+-+. +.
T Consensus        70 Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~  149 (234)
T PF04445_consen   70 GLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPD  149 (234)
T ss_dssp             T-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHS
T ss_pred             CCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcC
Confidence            33454  489999 9999999999998889999999998887653  1    11122     469999999987554 35


Q ss_pred             CCccEEEEcCCCCC
Q psy8015          88 GPYDAIHVGAAYPR  101 (165)
Q Consensus        88 ~~fD~I~i~~~~~~  101 (165)
                      .+||+|+++..+++
T Consensus       150 ~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  150 NSFDVVYFDPMFPE  163 (234)
T ss_dssp             S--SEEEE--S---
T ss_pred             CCCCEEEECCCCCC
Confidence            78999999988764

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.57  E-value=0.00017  Score=52.67  Aligned_cols=72  Identities=15%  Similarity=0.141  Sum_probs=48.8

Q ss_pred             cEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCC--CCCCCccEEEEcCC-----CCCc---h-------HHHHh
Q psy8015          49 NSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASF--GDNGPYDAIHVGAA-----YPRY---P-------EIFIH  108 (165)
Q Consensus        49 ~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~--~~~~~fD~I~i~~~-----~~~~---p-------~~l~~  108 (165)
                      +|+|.|+.+++++.++  +++.+.. +|++++.+-.+..  -+.+++|+++.+-+     .+.+   +       +...+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~   80 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE   80 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence            6999999999999996  6666664 5999998865421  12258999999733     2222   2       35789


Q ss_pred             ccccCcEEEEEe
Q psy8015         109 HLKSGGRLVIPI  120 (165)
Q Consensus       109 ~LkpgG~lvi~~  120 (165)
                      .|+|||++++.+
T Consensus        81 lL~~gG~i~iv~   92 (140)
T PF06962_consen   81 LLKPGGIITIVV   92 (140)
T ss_dssp             HEEEEEEEEEEE
T ss_pred             hhccCCEEEEEE
Confidence            999999999986

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG2940|consensus

Probab=97.51  E-value=0.00013  Score=57.65  Aligned_cols=95  Identities=11%  Similarity=0.027  Sum_probs=73.2

Q ss_pred             CCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc-cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC-
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL-SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP-  100 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~-~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~-  100 (165)
                      +....++|| ||-|+++.++-.. +++++-+|.|..|++.++ .+.-++ .++...+|-........+||.|+.+-+.| 
T Consensus        71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i-~~~~~v~DEE~Ldf~ens~DLiisSlslHW  149 (325)
T KOG2940|consen   71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSI-ETSYFVGDEEFLDFKENSVDLIISSLSLHW  149 (325)
T ss_pred             hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCce-EEEEEecchhcccccccchhhhhhhhhhhh
Confidence            456889999 9999999887654 589999999999999987 432222 35667777655444568999999988776 


Q ss_pred             --CchH---HHHhccccCcEEEEEe
Q psy8015         101 --RYPE---IFIHHLKSGGRLVIPI  120 (165)
Q Consensus       101 --~~p~---~l~~~LkpgG~lvi~~  120 (165)
                        ++|.   .|...|||+|.++...
T Consensus       150 ~NdLPg~m~~ck~~lKPDg~Fiasm  174 (325)
T KOG2940|consen  150 TNDLPGSMIQCKLALKPDGLFIASM  174 (325)
T ss_pred             hccCchHHHHHHHhcCCCccchhHH
Confidence              4553   6788999999988864

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.50  E-value=0.00065  Score=49.37  Aligned_cols=79  Identities=11%  Similarity=0.022  Sum_probs=54.3

Q ss_pred             CCCCeEEEE-ccccHHHHHHhc-----c-CCcEEEEeCCHHHHHhcc--cccCC--C-CCeEEEEccCCCCCCCCCCccE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPT-----F-IPNSFNINVYYYLSGGPL--SSTID--P-DHDYDLIADGRASFGDNGPYDA   92 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~-----~-~~~V~aiD~~~~~~~~A~--~~~~~--~-~nV~~~~gD~~~~~~~~~~fD~   92 (165)
                      .+..+|+|+ +|-||++..|+.     . .-+|+++|.++.+.+.|+  .++++  . .+.++..++...... ....++
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  102 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDI  102 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeE
Confidence            578999999 999999999998     3 348999999999999885  33444  3 467777776543211 334555


Q ss_pred             EEEcCCCCCchH
Q psy8015          93 IHVGAAYPRYPE  104 (165)
Q Consensus        93 I~i~~~~~~~p~  104 (165)
                      ++---+...+-+
T Consensus       103 ~vgLHaCG~Ls~  114 (141)
T PF13679_consen  103 LVGLHACGDLSD  114 (141)
T ss_pred             EEEeecccchHH
Confidence            544344444443

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.49  E-value=0.0002  Score=56.63  Aligned_cols=111  Identities=17%  Similarity=0.073  Sum_probs=73.9

Q ss_pred             chHHHHHHHHHHhcC---CCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcccccCCCCCeE-EEEccCCCC
Q psy8015          10 VSGAVAKYVTYLSGH---SKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPLSSTIDPDHDY-DLIADGRAS   83 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~---~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~~~~~~~~nV~-~~~gD~~~~   83 (165)
                      ||+---++...+...   .+++++||| +.||-+|-++.+. +.+|+|+|....-+..- ++.  -++|. +..-|+...
T Consensus        60 VSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k-LR~--d~rV~~~E~tN~r~l  136 (245)
T COG1189          60 VSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK-LRN--DPRVIVLERTNVRYL  136 (245)
T ss_pred             cccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh-Hhc--CCcEEEEecCChhhC
Confidence            666666676666533   479999999 9999999998887 68999999876443321 111  12222 222333322


Q ss_pred             CCC--CCCccEEEEcCCCC---CchHHHHhccccCcEEEEEecCC
Q psy8015          84 FGD--NGPYDAIHVGAAYP---RYPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        84 ~~~--~~~fD~I~i~~~~~---~~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      .++  .+..|.++++-++-   .+...+...|+|++-++..+-+.
T Consensus       137 ~~~~~~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKPQ  181 (245)
T COG1189         137 TPEDFTEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVLLVKPQ  181 (245)
T ss_pred             CHHHcccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEEEecch
Confidence            111  23678999987765   34567789999999999987654

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.48  E-value=0.00029  Score=57.09  Aligned_cols=92  Identities=17%  Similarity=0.110  Sum_probs=57.1

Q ss_pred             CeEEEE-ccc-cHHHHHHhccC---CcEEEEeCCHHHHHhcc--cc-cCCCC-CeEEEEccCCCCCCCCCCccEEEEcCC
Q psy8015          28 LDCLAL-TSN-TKQSTTLPTFI---PNSFNINVYYYLSGGPL--SS-TIDPD-HDYDLIADGRASFGDNGPYDAIHVGAA   98 (165)
Q Consensus        28 ~~vLei-~Gs-G~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~-~~~~~-nV~~~~gD~~~~~~~~~~fD~I~i~~~   98 (165)
                      .+|+=| +|. -..+.+|++..   ..|+++|+|+++.+.|+  .+ ..|+. +++|+.+|+.....+...||+|++.+-
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal  201 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL  201 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence            489888 542 26667787542   46999999999999996  34 44554 599999998654334568999999876


Q ss_pred             CC-------CchHHHHhccccCcEEEEE
Q psy8015          99 YP-------RYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        99 ~~-------~~p~~l~~~LkpgG~lvi~  119 (165)
                      ..       .+.+.+.+.++||.++++=
T Consensus       202 Vg~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  202 VGMDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             -S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             cccccchHHHHHHHHHhhCCCCcEEEEe
Confidence            64       3446788889999988874

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.44  E-value=0.001  Score=51.66  Aligned_cols=105  Identities=7%  Similarity=0.000  Sum_probs=57.6

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc---C---CcEEEEeCCHHHHHhcccccCCC-CCeEEEEccCCCC--
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF---I---PNSFNINVYYYLSGGPLSSTIDP-DHDYDLIADGRAS--   83 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~---~---~~V~aiD~~~~~~~~A~~~~~~~-~nV~~~~gD~~~~--   83 (165)
                      ...+-+++-. .+.+.++|+ +-.|-.+.++|.+   .   ++|+++|++.+.......+.+.. ++|++++||..+.  
T Consensus        21 m~~~qeli~~-~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~   99 (206)
T PF04989_consen   21 MVAYQELIWE-LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEI   99 (206)
T ss_dssp             HHHHHHHHHH-H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHH
T ss_pred             HHHHHHHHHH-hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHH
Confidence            3444455544 355999999 9888888777764   2   69999999877766554444333 5799999997531  


Q ss_pred             ------CCCCCCccEEEEcCCC--CCch---HHHHhccccCcEEEEE
Q psy8015          84 ------FGDNGPYDAIHVGAAY--PRYP---EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        84 ------~~~~~~fD~I~i~~~~--~~~p---~~l~~~LkpgG~lvi~  119 (165)
                            .........|+.++.-  .++.   +.+...+++|+.+|+-
T Consensus       100 ~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVe  146 (206)
T PF04989_consen  100 VDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVE  146 (206)
T ss_dssp             HHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEET
T ss_pred             HHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEE
Confidence                  1112344566666652  2333   3568899999998873

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG3178|consensus

Probab=97.41  E-value=0.0013  Score=54.53  Aligned_cols=90  Identities=12%  Similarity=0.039  Sum_probs=73.5

Q ss_pred             CCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCCchH-
Q psy8015          27 RLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPE-  104 (165)
Q Consensus        27 ~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p~-  104 (165)
                      -...+|+ .|.|..+..+.....+|-+++.+...+-.++- .+. +.|+.+.||..+..|+   -|+|++-.-.++.+| 
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~-~~~-~gV~~v~gdmfq~~P~---~daI~mkWiLhdwtDe  252 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAP-YLA-PGVEHVAGDMFQDTPK---GDAIWMKWILHDWTDE  252 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhh-hhc-CCcceecccccccCCC---cCeEEEEeecccCChH
Confidence            5889999 99999998888888899999999988876652 122 4589999999887553   479999988887665 


Q ss_pred             -------HHHhccccCcEEEEEec
Q psy8015         105 -------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       105 -------~l~~~LkpgG~lvi~~~  121 (165)
                             .|++.|+|||.+++...
T Consensus       253 dcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  253 DCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEec
Confidence                   57899999999999765

>KOG2198|consensus

Probab=97.35  E-value=0.0011  Score=55.48  Aligned_cols=98  Identities=15%  Similarity=0.099  Sum_probs=68.9

Q ss_pred             cCCCCCeEEEE-ccccHHHHHHhccC------CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCC-------CCC-
Q psy8015          23 GHSKRLDCLAL-TSNTKQSTTLPTFI------PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRA-------SFG-   85 (165)
Q Consensus        23 ~~~~~~~vLei-~GsG~~t~~la~~~------~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~-------~~~-   85 (165)
                      ..+|+++|||. +..|.-|+.|-...      +.|++=|.++..+..-+  .+.+...|+.+...|+..       .+. 
T Consensus       152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~  231 (375)
T KOG2198|consen  152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND  231 (375)
T ss_pred             ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence            45899999999 99998887666543      38999999999888764  555555566666655432       111 


Q ss_pred             -CCCCccEEEEcCCCC------CchH-----------------------HHHhccccCcEEEEEe
Q psy8015          86 -DNGPYDAIHVGAAYP------RYPE-----------------------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        86 -~~~~fD~I~i~~~~~------~~p~-----------------------~l~~~LkpgG~lvi~~  120 (165)
                       +...||.|+++..+.      +.++                       .-+++||+||+||...
T Consensus       232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST  296 (375)
T KOG2198|consen  232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST  296 (375)
T ss_pred             hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence             235799999986543      1111                       1358999999999974

>KOG1269|consensus

Probab=97.25  E-value=0.00042  Score=58.25  Aligned_cols=97  Identities=14%  Similarity=0.088  Sum_probs=77.0

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCCCCCCccEEEEcCC
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFGDNGPYDAIHVGAA   98 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~~~~~fD~I~i~~~   98 (165)
                      ..++..++++ ||.|..+..++... .+++++|.++.-+.+++  ....+++| -.++.+|..+...++..||.+.+-.+
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~  187 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV  187 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence            3678899999 99999999998876 68999999999998885  33334443 34477887777677889999999877


Q ss_pred             CCCch------HHHHhccccCcEEEEEe
Q psy8015          99 YPRYP------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        99 ~~~~p------~~l~~~LkpgG~lvi~~  120 (165)
                      ..+.|      +++++.++|||..++-.
T Consensus       188 ~~~~~~~~~~y~Ei~rv~kpGG~~i~~e  215 (364)
T KOG1269|consen  188 VCHAPDLEKVYAEIYRVLKPGGLFIVKE  215 (364)
T ss_pred             cccCCcHHHHHHHHhcccCCCceEEeHH
Confidence            77666      36789999999988853

>KOG1596|consensus

Probab=97.23  E-value=0.001  Score=52.94  Aligned_cols=105  Identities=17%  Similarity=0.151  Sum_probs=74.8

Q ss_pred             HHHHHHHHHhcC--CCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHH----HhcccccCCCCCeEEEEccCCC
Q psy8015          13 AVAKYVTYLSGH--SKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLS----GGPLSSTIDPDHDYDLIADGRA   82 (165)
Q Consensus        13 ~~~~~l~~l~~~--~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~----~~A~~~~~~~~nV~~~~gD~~~   82 (165)
                      +.+-++.-+.++  +|+.+||=+ +++|..-.+.+.++   +-|||+|.++..=    ..|+.    ..||--+..|+..
T Consensus       141 LAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk----RtNiiPIiEDArh  216 (317)
T KOG1596|consen  141 LAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK----RTNIIPIIEDARH  216 (317)
T ss_pred             HHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc----cCCceeeeccCCC
Confidence            344444433333  799999999 99999999999987   4799999987544    34432    4688888999864


Q ss_pred             CCCC---CCCccEEEEcCCCCCchH----HHHhccccCcEEEEEec
Q psy8015          83 SFGD---NGPYDAIHVGAAYPRYPE----IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        83 ~~~~---~~~fD~I~i~~~~~~~p~----~l~~~LkpgG~lvi~~~  121 (165)
                      ...-   -+-.|+||.+-+-+....    .....||+||-+++.+-
T Consensus       217 P~KYRmlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisik  262 (317)
T KOG1596|consen  217 PAKYRMLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIK  262 (317)
T ss_pred             chheeeeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEe
Confidence            3221   145799999877664322    34578999999999864

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.17  E-value=0.0029  Score=52.39  Aligned_cols=97  Identities=12%  Similarity=0.106  Sum_probs=65.7

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC------CcEEEEeCCHHHHHhcc--cccCCCCCeEE--EEccCCCC---CCC---C
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI------PNSFNINVYYYLSGGPL--SSTIDPDHDYD--LIADGRAS---FGD---N   87 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~------~~V~aiD~~~~~~~~A~--~~~~~~~nV~~--~~gD~~~~---~~~---~   87 (165)
                      .++..++|+ ||+|.-+..|.+..      -+.+++|+|.++++.+.  +.....+++++  +.||-.++   ++.   .
T Consensus        75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~  154 (319)
T TIGR03439        75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR  154 (319)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence            567799999 99998876655432      25899999999999884  44234566666  78875443   211   1


Q ss_pred             CCccEEEE-cCCCCCchH--------HHHh-ccccCcEEEEEec
Q psy8015          88 GPYDAIHV-GAAYPRYPE--------IFIH-HLKSGGRLVIPIG  121 (165)
Q Consensus        88 ~~fD~I~i-~~~~~~~p~--------~l~~-~LkpgG~lvi~~~  121 (165)
                      ....+++. +.+..+++.        .+.+ .|+|||.|++-+.
T Consensus       155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D  198 (319)
T TIGR03439       155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD  198 (319)
T ss_pred             CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence            23455554 445666542        4556 7999999999765

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.17  E-value=0.0005  Score=58.08  Aligned_cols=96  Identities=9%  Similarity=0.019  Sum_probs=67.9

Q ss_pred             CCeEEEE-ccccHHHHHHhcc---CCcEEEEeCCHHHHHhcc--cccCCCCC--eEEEEccCCCCCC-CCCCccEEEEcC
Q psy8015          27 RLDCLAL-TSNTKQSTTLPTF---IPNSFNINVYYYLSGGPL--SSTIDPDH--DYDLIADGRASFG-DNGPYDAIHVGA   97 (165)
Q Consensus        27 ~~~vLei-~GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~--~~~~~~~n--V~~~~gD~~~~~~-~~~~fD~I~i~~   97 (165)
                      .-++||. +|||.=+...+.-   ..+|++-|+|+++++..+  ++..++++  +++.+.|+...+. ....||+|=++.
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP  129 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP  129 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence            4589999 9999999888876   268999999999999985  44455544  8999999876542 357899999985


Q ss_pred             CCC--CchHHHHhccccCcEEEEEecC
Q psy8015          98 AYP--RYPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        98 ~~~--~~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      --.  .+.+..++.++.||.|.+...+
T Consensus       130 fGSp~pfldsA~~~v~~gGll~vTaTD  156 (377)
T PF02005_consen  130 FGSPAPFLDSALQAVKDGGLLCVTATD  156 (377)
T ss_dssp             SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred             CCCccHhHHHHHHHhhcCCEEEEeccc
Confidence            433  3447778999999999997654

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG3045|consensus

Probab=97.14  E-value=0.0025  Score=51.26  Aligned_cols=95  Identities=12%  Similarity=0.072  Sum_probs=68.8

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDA   92 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~   92 (165)
                      +.++++++........|.|+ ||-+-+|.   ..-.+|++.|+-+             -|=+++..|..+...++++.|+
T Consensus       168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a-------------~~~~V~~cDm~~vPl~d~svDv  231 (325)
T KOG3045|consen  168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS---SERHKVHSFDLVA-------------VNERVIACDMRNVPLEDESVDV  231 (325)
T ss_pred             HHHHHHHHHhCcCceEEEecccchhhhhh---ccccceeeeeeec-------------CCCceeeccccCCcCccCcccE
Confidence            45788888764556789999 99886655   4557899999743             1345566776664455789999


Q ss_pred             EEEcCCC--CCc---hHHHHhccccCcEEEEEecCCC
Q psy8015          93 IHVGAAY--PRY---PEIFIHHLKSGGRLVIPIGDTK  124 (165)
Q Consensus        93 I~i~~~~--~~~---p~~l~~~LkpgG~lvi~~~~~~  124 (165)
                      ++.+-+.  .++   ..+..+.|+|||.++|....+.
T Consensus       232 aV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SR  268 (325)
T KOG3045|consen  232 AVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSR  268 (325)
T ss_pred             EEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhh
Confidence            9887554  233   3577899999999999877654

>KOG3987|consensus

Probab=97.12  E-value=6.7e-05  Score=58.39  Aligned_cols=104  Identities=10%  Similarity=0.077  Sum_probs=70.4

Q ss_pred             hHHHHHHHHHHhcC--CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCC
Q psy8015          11 SGAVAKYVTYLSGH--SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDN   87 (165)
Q Consensus        11 ~~~~~~~l~~l~~~--~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~   87 (165)
                      +.+.++++..-.+.  +...++||+ +|.|-.|..++....+|+|.|.|..|..+-+.+  +. ||  +...  +....+
T Consensus        95 e~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk--~y-nV--l~~~--ew~~t~  167 (288)
T KOG3987|consen   95 EEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK--NY-NV--LTEI--EWLQTD  167 (288)
T ss_pred             HHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc--CC-ce--eeeh--hhhhcC
Confidence            35777777654221  234799999 999999999999999999999999999866432  22 21  1111  111112


Q ss_pred             CCccEEEEcCCCC------CchHHHHhcccc-CcEEEEEec
Q psy8015          88 GPYDAIHVGAAYP------RYPEIFIHHLKS-GGRLVIPIG  121 (165)
Q Consensus        88 ~~fD~I~i~~~~~------~~p~~l~~~Lkp-gG~lvi~~~  121 (165)
                      -+||+|.+-....      .+.+.++..|+| +||+++..-
T Consensus       168 ~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLV  208 (288)
T KOG3987|consen  168 VKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALV  208 (288)
T ss_pred             ceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEE
Confidence            3689887754332      344678889999 899888653

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.11  E-value=0.0021  Score=50.96  Aligned_cols=96  Identities=14%  Similarity=0.065  Sum_probs=53.9

Q ss_pred             CCCeEEEEcccc---HHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCC--CCccEEEEcCC
Q psy8015          26 KRLDCLALTSNT---KQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDN--GPYDAIHVGAA   98 (165)
Q Consensus        26 ~~~~vLei~GsG---~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~--~~fD~I~i~~~   98 (165)
                      .|+++|=+ |-.   .++..+.....+|+-+|+|+++++..+  .++.|++ ++.++.|..+++|+.  +.||++|.+..
T Consensus        44 ~gk~il~l-GDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~~~~fD~f~TDPP  121 (243)
T PF01861_consen   44 EGKRILFL-GDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEELRGKFDVFFTDPP  121 (243)
T ss_dssp             TT-EEEEE-S-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTSS-BSEEEE---
T ss_pred             cCCEEEEE-cCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHHhcCCCEEEeCCC
Confidence            57888877 555   344445555679999999999999886  5667876 999999999988864  89999999755


Q ss_pred             CCC-----chHHHHhccccCc-EEEEEecCC
Q psy8015          99 YPR-----YPEIFIHHLKSGG-RLVIPIGDT  123 (165)
Q Consensus        99 ~~~-----~p~~l~~~LkpgG-~lvi~~~~~  123 (165)
                      ..-     ......+.||.-| ..++..+..
T Consensus       122 yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~  152 (243)
T PF01861_consen  122 YTPEGLKLFLSRGIEALKGEGCAGYFGFTHK  152 (243)
T ss_dssp             SSHHHHHHHHHHHHHTB-STT-EEEEEE-TT
T ss_pred             CCHHHHHHHHHHHHHHhCCCCceEEEEEecC
Confidence            431     1123456777666 666666543

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=97.10  E-value=0.0011  Score=50.70  Aligned_cols=51  Identities=4%  Similarity=-0.081  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL   64 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~   64 (165)
                      .+..+++....  .+|+.|||- +|||..+....++..+.+++|++++.++.|+
T Consensus       179 ~l~~~lI~~~t--~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~  230 (231)
T PF01555_consen  179 ELIERLIKAST--NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAK  230 (231)
T ss_dssp             HHHHHHHHHHS---TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHH
T ss_pred             HHHHHHHHhhh--ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhc
Confidence            45677887764  689999999 9999999888888899999999999999874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG1709|consensus

Probab=97.08  E-value=0.0038  Score=49.00  Aligned_cols=96  Identities=13%  Similarity=0.001  Sum_probs=68.8

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccC-CCCCeEEEEcc---CCCCCCCCCCccEEEEcCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTI-DPDHDYDLIAD---GRASFGDNGPYDAIHVGAA   98 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~-~~~nV~~~~gD---~~~~~~~~~~fD~I~i~~~   98 (165)
                      .+|.|||+| -|-|.....+-..- .+=+-+|.+|+..+.-|.... ..+||....|-   +...++ ++.||-|+-+.-
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~-d~~FDGI~yDTy  178 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLP-DKHFDGIYYDTY  178 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcccc-ccCcceeEeech
Confidence            689999999 99998887665542 345668999999987652221 24688888874   444444 356999999866


Q ss_pred             CCCc------hHHHHhccccCcEEEEEec
Q psy8015          99 YPRY------PEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        99 ~~~~------p~~l~~~LkpgG~lvi~~~  121 (165)
                      .+.+      .+.+.++|||+|.+-..=+
T Consensus       179 ~e~yEdl~~~hqh~~rLLkP~gv~SyfNg  207 (271)
T KOG1709|consen  179 SELYEDLRHFHQHVVRLLKPEGVFSYFNG  207 (271)
T ss_pred             hhHHHHHHHHHHHHhhhcCCCceEEEecC
Confidence            4433      3567899999998766433

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.07  E-value=0.0024  Score=50.03  Aligned_cols=76  Identities=9%  Similarity=-0.038  Sum_probs=63.1

Q ss_pred             CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCCCCccEEEEcCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDNGPYDAIHVGAA   98 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~~~fD~I~i~~~   98 (165)
                      ..+.+++|| |-=+|++..|-+.  +..+++.|+++..++.|.  +++.++ +.+++..+|+...+...+.+|.+++.|.
T Consensus        15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM   94 (226)
T COG2384          15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM   94 (226)
T ss_pred             HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence            457779999 9999999998875  468999999999999994  555555 4699999999877766678999999876


Q ss_pred             CC
Q psy8015          99 YP  100 (165)
Q Consensus        99 ~~  100 (165)
                      -.
T Consensus        95 GG   96 (226)
T COG2384          95 GG   96 (226)
T ss_pred             cH
Confidence            54

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.05  E-value=0.0043  Score=54.15  Aligned_cols=111  Identities=14%  Similarity=0.129  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC------CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCC
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI------PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGR   81 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~------~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~   81 (165)
                      +.+.+++..+....+.++|+|- ||||.+-...+...      ...++.|+++..+..|+  +--+|.+ ++...++|..
T Consensus       172 ~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl  251 (489)
T COG0286         172 REVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTL  251 (489)
T ss_pred             HHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccc
Confidence            4444444444333678899999 99998776666654      24899999999999996  2223444 5677788765


Q ss_pred             CCC-C----CCCCccEEEEcCCCC-------C--------------ch----------HHHHhccccCcEEEEEecC
Q psy8015          82 ASF-G----DNGPYDAIHVGAAYP-------R--------------YP----------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        82 ~~~-~----~~~~fD~I~i~~~~~-------~--------------~p----------~~l~~~LkpgG~lvi~~~~  122 (165)
                      ... .    ..+.||.|+.+....       .              .+          ..+...|+|||+..+++..
T Consensus       252 ~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~  328 (489)
T COG0286         252 SNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD  328 (489)
T ss_pred             cCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence            432 2    236799998874432       0              00          1367899999987776653

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=96.99  E-value=0.0029  Score=49.42  Aligned_cols=98  Identities=14%  Similarity=0.125  Sum_probs=61.9

Q ss_pred             HHHHHHHHHhcC---CC----CCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC
Q psy8015          13 AVAKYVTYLSGH---SK----RLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF   84 (165)
Q Consensus        13 ~~~~~l~~l~~~---~~----~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~   84 (165)
                      ....+++||...   .+    .-++||| |=+.+....-..... |++||+++.-        -++..-.|..-....  
T Consensus        31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~fd-vt~IDLns~~--------~~I~qqDFm~rplp~--   99 (219)
T PF11968_consen   31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWFD-VTRIDLNSQH--------PGILQQDFMERPLPK--   99 (219)
T ss_pred             hhHHHHHHhhhhccccccccccceEEeecccCCCCcccccCcee-eEEeecCCCC--------CCceeeccccCCCCC--
Confidence            344566666543   11    2599999 776666554444445 9999998711        122222222222111  


Q ss_pred             CCCCCccEEEEcCCCCCchH---------HHHhccccCcE-----EEEEec
Q psy8015          85 GDNGPYDAIHVGAAYPRYPE---------IFIHHLKSGGR-----LVIPIG  121 (165)
Q Consensus        85 ~~~~~fD~I~i~~~~~~~p~---------~l~~~LkpgG~-----lvi~~~  121 (165)
                      .+.+.||+|.++-....+|+         .+.+.|+|+|.     |+++.+
T Consensus       100 ~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP  150 (219)
T PF11968_consen  100 NESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP  150 (219)
T ss_pred             CcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeC
Confidence            13578999999988887774         46789999999     888765

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.98  E-value=0.0041  Score=50.30  Aligned_cols=78  Identities=6%  Similarity=-0.125  Sum_probs=46.6

Q ss_pred             CCCeEEEE-ccccHHHHHHhcc---CCcEEEEeCCHHHHHhcc--cccCC-CCCeEEEEccCCCCCCCCCCccEEEEcCC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTF---IPNSFNINVYYYLSGGPL--SSTID-PDHDYDLIADGRASFGDNGPYDAIHVGAA   98 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~--~~~~~-~~nV~~~~gD~~~~~~~~~~fD~I~i~~~   98 (165)
                      ...+|||+ +|+|..+-.+...   ..+++++|.|+.|.+.++  ++... ..+.... .+......+..+.|.|++...
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~DLvi~s~~  111 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-RVLYRDFLPFPPDDLVIASYV  111 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-hhhhcccccCCCCcEEEEehh
Confidence            45799999 9998644333332   358999999999999986  22211 1111111 111111112234599999988


Q ss_pred             CCCchH
Q psy8015          99 YPRYPE  104 (165)
Q Consensus        99 ~~~~p~  104 (165)
                      +.++++
T Consensus       112 L~EL~~  117 (274)
T PF09243_consen  112 LNELPS  117 (274)
T ss_pred             hhcCCc
Confidence            776663

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.88  E-value=0.003  Score=52.01  Aligned_cols=93  Identities=9%  Similarity=-0.068  Sum_probs=58.5

Q ss_pred             CCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCe-EEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          25 SKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        25 ~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      .++++||=.  .+.|..+..+|+..+  +|+++|.+++..+.|+  ++|.+.+ .....|..+.....+.||+||-....
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~--~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~  245 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR--EMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH  245 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH--HcCCcEEecCCcccHHHHhccCCCCCEEEECCCC
Confidence            478999877  445566667777653  6999999999988875  3454321 11111111111112359988876554


Q ss_pred             CCchHHHHhccccCcEEEEE
Q psy8015         100 PRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus       100 ~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +..-+...+.|++||+++..
T Consensus       246 ~~~~~~~~~~l~~~G~iv~~  265 (343)
T PRK09880        246 PSSINTCLEVTRAKGVMVQV  265 (343)
T ss_pred             HHHHHHHHHHhhcCCEEEEE
Confidence            44445677999999998874

>PRK11524 putative methyltransferase; Provisional

Probab=96.88  E-value=0.0027  Score=51.46  Aligned_cols=51  Identities=8%  Similarity=-0.101  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL   64 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~   64 (165)
                      .+..+++....  .+|+.|||- +|||..+....++..+.+++|++++.++.|+
T Consensus       196 ~L~erlI~~~S--~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~  247 (284)
T PRK11524        196 ALLKRIILASS--NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGL  247 (284)
T ss_pred             HHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHH
Confidence            34566666663  589999999 9999999888888899999999999999995

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=96.77  E-value=0.014  Score=47.28  Aligned_cols=95  Identities=17%  Similarity=0.213  Sum_probs=68.7

Q ss_pred             CCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--ccc----------------------------C-------
Q psy8015          27 RLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SST----------------------------I-------   68 (165)
Q Consensus        27 ~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~----------------------------~-------   68 (165)
                      ..+||=- ||.|-++-.+|...-.|.+.|.|--|+=..+  ++.                            .       
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p  136 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDP  136 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCc
Confidence            5789999 9999999999999889999999999865432  110                            0       


Q ss_pred             -----CCCCeEEEEccCCCCCCCC---CCccEEEEcCCCC------CchHHHHhccccCcEEEEEecC
Q psy8015          69 -----DPDHDYDLIADGRASFGDN---GPYDAIHVGAAYP------RYPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        69 -----~~~nV~~~~gD~~~~~~~~---~~fD~I~i~~~~~------~~p~~l~~~LkpgG~lvi~~~~  122 (165)
                           ...|.....||-.+...+.   +.||+|+...-..      ++.+.+.+.||||| +.|.+|+
T Consensus       137 ~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG-~WIN~GP  203 (270)
T PF07942_consen  137 SSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGG-YWINFGP  203 (270)
T ss_pred             ccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCC-EEEecCC
Confidence                 1224666777766554444   7899987764332      23467889999999 6777775

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.77  E-value=0.0024  Score=55.44  Aligned_cols=91  Identities=12%  Similarity=0.059  Sum_probs=54.2

Q ss_pred             CeEEEE-ccccHHHHHHhccCCcEEEE---eCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC-Cc
Q psy8015          28 LDCLAL-TSNTKQSTTLPTFIPNSFNI---NVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP-RY  102 (165)
Q Consensus        28 ~~vLei-~GsG~~t~~la~~~~~V~ai---D~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~-~~  102 (165)
                      ..+||+ ||+|.+++.|....=.+.++   |..+..++.|-.+  |+.-.--+.+.-.-.+ +...||.|.+....- ..
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR--Gvpa~~~~~~s~rLPf-p~~~fDmvHcsrc~i~W~  195 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER--GVPAMIGVLGSQRLPF-PSNAFDMVHCSRCLIPWH  195 (506)
T ss_pred             EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc--CcchhhhhhccccccC-Cccchhhhhcccccccch
Confidence            569999 99999999887543222222   3444455555212  4332111222222233 357899999975542 22


Q ss_pred             ------hHHHHhccccCcEEEEEec
Q psy8015         103 ------PEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       103 ------p~~l~~~LkpgG~lvi~~~  121 (165)
                            .-++-+.|||||.++..-.
T Consensus       196 ~~~g~~l~evdRvLRpGGyfv~S~p  220 (506)
T PF03141_consen  196 PNDGFLLFEVDRVLRPGGYFVLSGP  220 (506)
T ss_pred             hcccceeehhhhhhccCceEEecCC
Confidence                  2256799999999988654

; GO: 0008168 methyltransferase activity

>KOG1253|consensus

Probab=96.76  E-value=0.00059  Score=58.93  Aligned_cols=98  Identities=11%  Similarity=0.082  Sum_probs=76.8

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCC----CCCCccEE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFG----DNGPYDAI   93 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~----~~~~fD~I   93 (165)
                      .++-+|||. ++||.-+...|+..   ++|++-|.++..++..+  .+..+.++ |+..++|+...+-    ....||+|
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI  187 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI  187 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence            578899999 99999999888864   68999999999999664  44434544 7788888854321    23689999


Q ss_pred             EEc--CCCCCchHHHHhccccCcEEEEEecC
Q psy8015          94 HVG--AAYPRYPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        94 ~i~--~~~~~~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      -++  ++...+.|..++.++.||.|.+.+.+
T Consensus       188 DLDPyGs~s~FLDsAvqav~~gGLL~vT~TD  218 (525)
T KOG1253|consen  188 DLDPYGSPSPFLDSAVQAVRDGGLLCVTCTD  218 (525)
T ss_pred             ecCCCCCccHHHHHHHHHhhcCCEEEEEecc
Confidence            998  45557778888999999999998754

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.73  E-value=0.0043  Score=52.02  Aligned_cols=96  Identities=9%  Similarity=0.059  Sum_probs=74.5

Q ss_pred             CCeEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC-CCCccEEEEcCCC-
Q psy8015          27 RLDCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD-NGPYDAIHVGAAY-   99 (165)
Q Consensus        27 ~~~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~-~~~fD~I~i~~~~-   99 (165)
                      ..+|+|. +|||.=+..+|.-.+  +|+.=|+||+.++.++  .+.....+...++.|+...+.+ ...||+|=++.-- 
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDPFGS  132 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDPFGS  132 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecCCCCC
Confidence            6899999 999999998887664  6999999999999995  4433355778888888665543 4789999887433 


Q ss_pred             -CCchHHHHhccccCcEEEEEecC
Q psy8015         100 -PRYPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus       100 -~~~p~~l~~~LkpgG~lvi~~~~  122 (165)
                       .-+.+..++..+.||.|-+...+
T Consensus       133 PaPFlDaA~~s~~~~G~l~vTATD  156 (380)
T COG1867         133 PAPFLDAALRSVRRGGLLCVTATD  156 (380)
T ss_pred             CchHHHHHHHHhhcCCEEEEEecc
Confidence             34447778899999999887654

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.60  E-value=0.0037  Score=51.50  Aligned_cols=88  Identities=7%  Similarity=-0.117  Sum_probs=56.2

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc-C-CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC-
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF-I-PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS-   83 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~-~-~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~-   83 (165)
                      +|=+....+++|.. .++...+|. -|.|--|..+... - ++|+++|.|+++++.|+  ++.. -+++.+++++-.+. 
T Consensus         5 ~PVll~Evl~~L~~-~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~   82 (310)
T PF01795_consen    5 IPVLLKEVLEALNP-KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLD   82 (310)
T ss_dssp             --TTHHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHH
T ss_pred             ecccHHHHHHhhCc-CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHH
Confidence            34467788899964 889999999 8888777666543 3 79999999999999885  4433 35799999985321 


Q ss_pred             -----CCCCCCccEEEEcCCC
Q psy8015          84 -----FGDNGPYDAIHVGAAY   99 (165)
Q Consensus        84 -----~~~~~~fD~I~i~~~~   99 (165)
                           ......+|.|+++-++
T Consensus        83 ~~l~~~~~~~~~dgiL~DLGv  103 (310)
T PF01795_consen   83 EYLKELNGINKVDGILFDLGV  103 (310)
T ss_dssp             HHHHHTTTTS-EEEEEEE-S-
T ss_pred             HHHHHccCCCccCEEEEcccc
Confidence                 1123579999998544

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=96.47  E-value=0.012  Score=45.96  Aligned_cols=106  Identities=10%  Similarity=0.012  Sum_probs=69.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccH--HHHHHh---c-cCCcEEEEeCCHHHHHhc-c-cccCCCCC-eEEEEccCCC
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTK--QSTTLP---T-FIPNSFNINVYYYLSGGP-L-SSTIDPDH-DYDLIADGRA   82 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~--~t~~la---~-~~~~V~aiD~~~~~~~~A-~-~~~~~~~n-V~~~~gD~~~   82 (165)
                      .++.++..|..=-..+.++|+ ++.|.  .|..||   + .++++++|-.+++-.... + +...+..+ ++|+.|+..+
T Consensus        28 ~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e  107 (218)
T PF07279_consen   28 GVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPE  107 (218)
T ss_pred             CHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHH
Confidence            366777777642345778899 55332  333333   2 358999998887765444 3 66667655 7999998643


Q ss_pred             -CCCCCCCccEEEEcCCCCCchHHHHhccc--cCcEEEE
Q psy8015          83 -SFGDNGPYDAIHVGAAYPRYPEIFIHHLK--SGGRLVI  118 (165)
Q Consensus        83 -~~~~~~~fD~I~i~~~~~~~p~~l~~~Lk--pgG~lvi  118 (165)
                       .++.....|.++++.-..+.-..+++.++  |.|-+|+
T Consensus       108 ~~~~~~~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV  146 (218)
T PF07279_consen  108 EVMPGLKGIDFVVVDCKREDFAARVLRAAKLSPRGAVVV  146 (218)
T ss_pred             HHHhhccCCCEEEEeCCchhHHHHHHHHhccCCCceEEE
Confidence             45566789999999998777755555554  4565444

The function of this family is unknown.

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=96.47  E-value=0.001  Score=46.88  Aligned_cols=85  Identities=12%  Similarity=0.002  Sum_probs=58.4

Q ss_pred             cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC------CCCCCCCCccEEEEcCCCCCchHHHH
Q psy8015          35 SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR------ASFGDNGPYDAIHVGAAYPRYPEIFI  107 (165)
Q Consensus        35 GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~------~~~~~~~~fD~I~i~~~~~~~p~~l~  107 (165)
                      |.|..+..+|+.. .+|+++|.+++-.+.++  ++|.+.  ++..+-.      ..+.....+|++|-..+.+...+..+
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~--~~Ga~~--~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~   76 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAK--ELGADH--VIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAI   76 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHH--HTTESE--EEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHH--hhcccc--cccccccccccccccccccccceEEEEecCcHHHHHHHH
Confidence            5688898899876 58999999999988885  344322  2222211      01112247999988777566667778


Q ss_pred             hccccCcEEEEEecCC
Q psy8015         108 HHLKSGGRLVIPIGDT  123 (165)
Q Consensus       108 ~~LkpgG~lvi~~~~~  123 (165)
                      +.|+++|++++.-...
T Consensus        77 ~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   77 KLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             HHEEEEEEEEEESSTS
T ss_pred             HHhccCCEEEEEEccC
Confidence            9999999999865443

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK13699 putative methylase; Provisional

Probab=96.46  E-value=0.0087  Score=47.13  Aligned_cols=50  Identities=4%  Similarity=-0.059  Sum_probs=41.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL   64 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~   64 (165)
                      ...++++...  .+|+.|||- +|||..+....++..+.+++|++++..+.|.
T Consensus       152 l~~~~i~~~s--~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~  202 (227)
T PRK13699        152 SLQPLIESFT--HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQ  202 (227)
T ss_pred             HHHHHHHHhC--CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHH
Confidence            3445555543  589999999 9999998888888889999999999999984

>cd08230 glucose_DH Glucose dehydrogenase

Probab=96.46  E-value=0.0086  Score=49.43  Aligned_cols=92  Identities=11%  Similarity=-0.022  Sum_probs=56.1

Q ss_pred             CCCCeEEEE-c-cccHHHHHHhccCC-cEEEEeC---CHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCC
Q psy8015          25 SKRLDCLAL-T-SNTKQSTTLPTFIP-NSFNINV---YYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAA   98 (165)
Q Consensus        25 ~~~~~vLei-~-GsG~~t~~la~~~~-~V~aiD~---~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~   98 (165)
                      .++++||=. + +.|.++..+++..+ +|++++.   +++-.+.++  ++|.+.+.....|..+ ......||+||-...
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~--~~Ga~~v~~~~~~~~~-~~~~~~~d~vid~~g  247 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVE--ELGATYVNSSKTPVAE-VKLVGEFDLIIEATG  247 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH--HcCCEEecCCccchhh-hhhcCCCCEEEECcC
Confidence            578999766 3 33566666776654 8999987   566666664  3454322111111111 111246998887766


Q ss_pred             CCCchHHHHhccccCcEEEEE
Q psy8015          99 YPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        99 ~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      .+...+...+.|++||+++..
T Consensus       248 ~~~~~~~~~~~l~~~G~~v~~  268 (355)
T cd08230         248 VPPLAFEALPALAPNGVVILF  268 (355)
T ss_pred             CHHHHHHHHHHccCCcEEEEE
Confidence            554556677999999998763

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=96.45  E-value=0.016  Score=47.48  Aligned_cols=88  Identities=10%  Similarity=-0.033  Sum_probs=64.3

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHH-HHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCC-
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQS-TTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRA-   82 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t-~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~-   82 (165)
                      +|=+....++.|.. .|+...+|. -|.|--| +.|.++.  ++++++|.|+.+++.|+  +...+ +++.+++++-.+ 
T Consensus         8 ipVLl~E~i~~L~~-~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l   85 (314)
T COG0275           8 IPVLLNEVVELLAP-KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANL   85 (314)
T ss_pred             cchHHHHHHHhccc-CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHH
Confidence            55677888898864 889999999 7766555 5555553  78999999999999997  44433 579999987432 


Q ss_pred             --CCCC--CCCccEEEEcCCC
Q psy8015          83 --SFGD--NGPYDAIHVGAAY   99 (165)
Q Consensus        83 --~~~~--~~~fD~I~i~~~~   99 (165)
                        .++.  .+.+|-|+.+-++
T Consensus        86 ~~~l~~~~i~~vDGiL~DLGV  106 (314)
T COG0275          86 AEALKELGIGKVDGILLDLGV  106 (314)
T ss_pred             HHHHHhcCCCceeEEEEeccC
Confidence              1111  3589999998544

>KOG1331|consensus

Probab=96.38  E-value=0.0055  Score=49.68  Aligned_cols=102  Identities=18%  Similarity=0.093  Sum_probs=75.1

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDA   92 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~   92 (165)
                      +-+..+.+.....+..++|+ ||.|-.+-.= + .-.+++.|+...++..|+..  |.  .....+|+........+||.
T Consensus        33 Wp~v~qfl~~~~~gsv~~d~gCGngky~~~~-p-~~~~ig~D~c~~l~~~ak~~--~~--~~~~~ad~l~~p~~~~s~d~  106 (293)
T KOG1331|consen   33 WPMVRQFLDSQPTGSVGLDVGCGNGKYLGVN-P-LCLIIGCDLCTGLLGGAKRS--GG--DNVCRADALKLPFREESFDA  106 (293)
T ss_pred             cHHHHHHHhccCCcceeeecccCCcccCcCC-C-cceeeecchhhhhccccccC--CC--ceeehhhhhcCCCCCCcccc
Confidence            34555555555668999999 9999554321 1 12588999999999988633  22  26778998876666789999


Q ss_pred             EEEcCCCCCch---------HHHHhccccCcEEEEEec
Q psy8015          93 IHVGAAYPRYP---------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        93 I~i~~~~~~~p---------~~l~~~LkpgG~lvi~~~  121 (165)
                      ++..+..+++-         +++.+.|+|||...+.+.
T Consensus       107 ~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw  144 (293)
T KOG1331|consen  107 ALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW  144 (293)
T ss_pred             chhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence            99988888654         568899999999888765

>PHA01634 hypothetical protein

Probab=96.24  E-value=0.016  Score=41.90  Aligned_cols=70  Identities=4%  Similarity=-0.179  Sum_probs=49.7

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC-CCCCccEEEEcCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG-DNGPYDAIHVGAA   98 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~-~~~~fD~I~i~~~   98 (165)
                      -.+++|+|| .+.|..+..++... ++|+++|.++.+.+..+  ++..   ||. =.+-....|+ ..++||...++..
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n---nI~-DK~v~~~eW~~~Y~~~Di~~iDCe  101 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF---NIC-DKAVMKGEWNGEYEDVDIFVMDCE  101 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh---eee-eceeecccccccCCCcceEEEEcc
Confidence            478999999 99999999998764 78999999999999885  3322   211 1111112233 3578999998743

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=96.12  E-value=0.021  Score=46.13  Aligned_cols=94  Identities=14%  Similarity=0.110  Sum_probs=60.2

Q ss_pred             CCCCCeEEEE-cc-ccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC-C--CCCCCCCccEEEEcC
Q psy8015          24 HSKRLDCLAL-TS-NTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR-A--SFGDNGPYDAIHVGA   97 (165)
Q Consensus        24 ~~~~~~vLei-~G-sG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~-~--~~~~~~~fD~I~i~~   97 (165)
                      ..++++||.. +| .|..+..+|+.. .+|++++.+++..+.++  ..|.+.+-....+.. .  .......+|.++-..
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~  240 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAK--ELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV  240 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH--HhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECC
Confidence            4678999998 65 477777777754 47999999999888774  234422111111100 0  012235699877654


Q ss_pred             CCCCchHHHHhccccCcEEEEE
Q psy8015          98 AYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        98 ~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ......+...+.|+++|+++..
T Consensus       241 g~~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         241 GTQPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             CCHHHHHHHHHHhhcCCEEEEE
Confidence            4444556678999999998875

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.97  E-value=0.0081  Score=48.24  Aligned_cols=97  Identities=11%  Similarity=-0.058  Sum_probs=58.1

Q ss_pred             CCCeEEEE-cccc-HHHHHHhccCCcEEEEeCCHHHHHhcc--cccC----------------C-----------C-CCe
Q psy8015          26 KRLDCLAL-TSNT-KQSTTLPTFIPNSFNINVYYYLSGGPL--SSTI----------------D-----------P-DHD   73 (165)
Q Consensus        26 ~~~~vLei-~GsG-~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~----------------~-----------~-~nV   73 (165)
                      +|.++||| ||.- |....+++.+.+++..|..+.-.+..+  ++.-                |           + ..|
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V  135 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV  135 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence            57899999 8865 444444556689999999988776432  1110                1           0 113


Q ss_pred             -EEEEccCCCCCC--C---C-CCccEEEEcCCCC----Cch------HHHHhccccCcEEEEEecC
Q psy8015          74 -YDLIADGRASFG--D---N-GPYDAIHVGAAYP----RYP------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        74 -~~~~gD~~~~~~--~---~-~~fD~I~i~~~~~----~~p------~~l~~~LkpgG~lvi~~~~  122 (165)
                       .++..|..+.-+  +   . .+||+|+.....+    ...      ..+.++|||||.|++...-
T Consensus       136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l  201 (256)
T PF01234_consen  136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL  201 (256)
T ss_dssp             EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence             366788765322  1   1 2499998875443    222      3578999999999997543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=95.96  E-value=0.068  Score=43.86  Aligned_cols=89  Identities=11%  Similarity=-0.052  Sum_probs=56.3

Q ss_pred             cCCCCCeEEEE-c-cccHHHHHHhccCC-cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          23 GHSKRLDCLAL-T-SNTKQSTTLPTFIP-NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        23 ~~~~~~~vLei-~-GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      ..+++++||=. + +.|..+..+|+..+ +|++++.+++-.+.|+  ++|.+.+  +..+  +.  ..+.+|.++.....
T Consensus       162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~--~~Ga~~v--i~~~--~~--~~~~~d~~i~~~~~  233 (329)
T TIGR02822       162 SLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLAL--ALGAASA--GGAY--DT--PPEPLDAAILFAPA  233 (329)
T ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH--HhCCcee--cccc--cc--CcccceEEEECCCc
Confidence            34789999877 3 34555566666554 7999999998887774  3455432  1111  11  12358877765444


Q ss_pred             CCchHHHHhccccCcEEEEE
Q psy8015         100 PRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus       100 ~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ....+...+.|++||++++.
T Consensus       234 ~~~~~~~~~~l~~~G~~v~~  253 (329)
T TIGR02822       234 GGLVPPALEALDRGGVLAVA  253 (329)
T ss_pred             HHHHHHHHHhhCCCcEEEEE
Confidence            44445567999999999763

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=95.91  E-value=0.1  Score=43.68  Aligned_cols=96  Identities=8%  Similarity=-0.098  Sum_probs=61.0

Q ss_pred             CCCCCeEEEE-ccc-cHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEcc-CCC---CCCCCCCccEEEE
Q psy8015          24 HSKRLDCLAL-TSN-TKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIAD-GRA---SFGDNGPYDAIHV   95 (165)
Q Consensus        24 ~~~~~~vLei-~Gs-G~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD-~~~---~~~~~~~fD~I~i   95 (165)
                      ..++++||.. +|+ |..+..+|+..+  +|+++|.+++..+.++.. .+...+.....+ ...   .+.....+|.++-
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~-~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld  260 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH-LGAETINFEEVDDVVEALRELTGGRGPDVCID  260 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CCcEEEcCCcchHHHHHHHHHcCCCCCCEEEE
Confidence            4688999999 877 888888888765  599999999999887521 122112211111 111   1122236898876


Q ss_pred             cCCCC---------------------CchHHHHhccccCcEEEEEe
Q psy8015          96 GAAYP---------------------RYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        96 ~~~~~---------------------~~p~~l~~~LkpgG~lvi~~  120 (165)
                      ....+                     ...+..++.|+++|+++..-
T Consensus       261 ~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         261 AVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             CCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            43211                     12356789999999998863

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=95.80  E-value=0.0078  Score=47.17  Aligned_cols=50  Identities=10%  Similarity=0.001  Sum_probs=35.3

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC----CcEEEEeCCHHHHHhcc
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI----PNSFNINVYYYLSGGPL   64 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~----~~V~aiD~~~~~~~~A~   64 (165)
                      .+|-+..+.. ...-+++|- ||+||+...+.-+-    ..|++-|+|+++++.|+
T Consensus        40 ~qR~l~~l~~-~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~   94 (246)
T PF11599_consen   40 FQRALHYLEG-KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELAR   94 (246)
T ss_dssp             HHHHHCTSSS--S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHH
T ss_pred             HHHHHHhhcC-CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHH
Confidence            3444444432 445689999 99999998887653    58999999999999884

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG0023|consensus

Probab=95.76  E-value=0.015  Score=48.15  Aligned_cols=93  Identities=11%  Similarity=-0.094  Sum_probs=62.0

Q ss_pred             CCCCeEEEE--ccccHHHHHHhccCC-cEEEEeCCHHHHHhcccccCCCCC-eEEE-EccCCCCCCCCCCccEEEEcCC-
Q psy8015          25 SKRLDCLAL--TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPLSSTIDPDH-DYDL-IADGRASFGDNGPYDAIHVGAA-   98 (165)
Q Consensus        25 ~~~~~vLei--~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~~~~~n-V~~~-~gD~~~~~~~~~~fD~I~i~~~-   98 (165)
                      .||+++-=+  .|-|.++..+|+..+ +|+++|.+++--+.| ++.+|.+. +.+. ..|-.+..  .+..|.++-+.. 
T Consensus       180 ~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea-~~~LGAd~fv~~~~d~d~~~~~--~~~~dg~~~~v~~  256 (360)
T KOG0023|consen  180 GPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEA-IKSLGADVFVDSTEDPDIMKAI--MKTTDGGIDTVSN  256 (360)
T ss_pred             CCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHH-HHhcCcceeEEecCCHHHHHHH--HHhhcCcceeeee
Confidence            689998888  889999999999874 999999997544434 45567654 2222 11211111  134565554433 


Q ss_pred             -CCCchHHHHhccccCcEEEEEe
Q psy8015          99 -YPRYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        99 -~~~~p~~l~~~LkpgG~lvi~~  120 (165)
                       ..+-.+.+.+.||++|++|..-
T Consensus       257 ~a~~~~~~~~~~lk~~Gt~V~vg  279 (360)
T KOG0023|consen  257 LAEHALEPLLGLLKVNGTLVLVG  279 (360)
T ss_pred             ccccchHHHHHHhhcCCEEEEEe
Confidence             4455577889999999999854

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=95.56  E-value=0.036  Score=44.78  Aligned_cols=68  Identities=7%  Similarity=-0.178  Sum_probs=47.9

Q ss_pred             eEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC--CCCccEEEEcCCCC
Q psy8015          29 DCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD--NGPYDAIHVGAAYP  100 (165)
Q Consensus        29 ~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~--~~~fD~I~i~~~~~  100 (165)
                      +|+|+ ||+|.++.-+.... ..|+++|+++.+++.-+..   .++. ++.+|..+....  ...+|+++.+..+.
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N---~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq   73 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEAN---FPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQ   73 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHh---CCCC-CccCccccCchhhcCCCCCEEEeCCCCh
Confidence            69999 99999988777764 5689999999999876521   1121 456676543322  35799999876543

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG2352|consensus

Probab=95.48  E-value=0.16  Score=44.15  Aligned_cols=95  Identities=14%  Similarity=0.042  Sum_probs=71.5

Q ss_pred             CCCC-eEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhccccc-CCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015          25 SKRL-DCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSST-IDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP  100 (165)
Q Consensus        25 ~~~~-~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~-~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~  100 (165)
                      .+.. ++|.+ ||.--++..+-.-+ ..++.+|+|+-.++....+. ...+-..+...|......++++||.++--+..+
T Consensus        46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlD  125 (482)
T KOG2352|consen   46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLD  125 (482)
T ss_pred             chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccc
Confidence            4556 89999 99988888777654 68999999999998775322 344558899999887666778999888766554


Q ss_pred             Cc----------------hHHHHhccccCcEEEEE
Q psy8015         101 RY----------------PEIFIHHLKSGGRLVIP  119 (165)
Q Consensus       101 ~~----------------p~~l~~~LkpgG~lvi~  119 (165)
                      ..                -+++.+.|++||+.+..
T Consensus       126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv  160 (482)
T KOG2352|consen  126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV  160 (482)
T ss_pred             cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence            22                13568999999996654

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.35  E-value=0.073  Score=41.20  Aligned_cols=95  Identities=16%  Similarity=0.082  Sum_probs=59.3

Q ss_pred             CCCCeEEEE-ccc-cHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCe-EEEEccCCCC--CCCCCCccEEEEcCC
Q psy8015          25 SKRLDCLAL-TSN-TKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRAS--FGDNGPYDAIHVGAA   98 (165)
Q Consensus        25 ~~~~~vLei-~Gs-G~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~~--~~~~~~fD~I~i~~~   98 (165)
                      .++++||-. +|+ |..++.+++.. .+|++++.+++..+.++  ..+..++ .....+....  ......+|.++....
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~  210 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAK--ELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVG  210 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH--HhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCC
Confidence            678999988 664 66666666654 58999999988777664  2232211 1000010000  112357999987655


Q ss_pred             CCCchHHHHhccccCcEEEEEec
Q psy8015          99 YPRYPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        99 ~~~~p~~l~~~LkpgG~lvi~~~  121 (165)
                      .....+...+.|+++|+++..-.
T Consensus       211 ~~~~~~~~~~~l~~~G~~v~~~~  233 (271)
T cd05188         211 GPETLAQALRLLRPGGRIVVVGG  233 (271)
T ss_pred             CHHHHHHHHHhcccCCEEEEEcc
Confidence            43556667899999999887543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=95.35  E-value=0.14  Score=41.33  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=60.9

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccH--HHHHHhccC---CcEEEEeCCHHHHHhcccccCCCCC--eEEEEccCCCC--
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTK--QSTTLPTFI---PNSFNINVYYYLSGGPLSSTIDPDH--DYDLIADGRAS--   83 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~--~t~~la~~~---~~V~aiD~~~~~~~~A~~~~~~~~n--V~~~~gD~~~~--   83 (165)
                      ..|..+.|.....=..+||| ||--.  .+-..|+..   .+|+-+|.+|-.+..+|.-..+.++  ..++.+|..+.  
T Consensus        56 l~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~  135 (267)
T PF04672_consen   56 LRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEA  135 (267)
T ss_dssp             HHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHH
T ss_pred             HHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHH
Confidence            45677777642144789999 66431  223343332   5899999999999999821123445  89999997531  


Q ss_pred             ---------CCCCCCccEEEEcCCCCCchH---------HHHhccccCcEEEEEecCC
Q psy8015          84 ---------FGDNGPYDAIHVGAAYPRYPE---------IFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        84 ---------~~~~~~fD~I~i~~~~~~~p~---------~l~~~LkpgG~lvi~~~~~  123 (165)
                               +-+....=++++.+..+++++         .+.+.|.||..|++.+.+.
T Consensus       136 iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~  193 (267)
T PF04672_consen  136 ILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD  193 (267)
T ss_dssp             HHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred             HhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence                     111123336777777776654         5789999999999998754

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=95.32  E-value=0.1  Score=43.48  Aligned_cols=95  Identities=11%  Similarity=0.034  Sum_probs=59.5

Q ss_pred             CCCCeEEEE-ccc-cHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEc-cCCC---CCCCCCCccEEEEc
Q psy8015          25 SKRLDCLAL-TSN-TKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIA-DGRA---SFGDNGPYDAIHVG   96 (165)
Q Consensus        25 ~~~~~vLei-~Gs-G~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g-D~~~---~~~~~~~fD~I~i~   96 (165)
                      .++.+|+=+ +|. |.++..+++..  .+|+.+|.+++.++.|+.. .+.+-+..... +...   .......||++|-.
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~-~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~  245 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEA-GGADVVVNPSEDDAGAEILELTGGRGADVVIEA  245 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHh-CCCeEeecCccccHHHHHHHHhCCCCCCEEEEC
Confidence            345578777 553 56666677765  5899999999999999621 12211111111 1110   11112369999987


Q ss_pred             CCCCCchHHHHhccccCcEEEEEe
Q psy8015          97 AAYPRYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        97 ~~~~~~p~~l~~~LkpgG~lvi~~  120 (165)
                      .+.+..-+...+.++|||++++.=
T Consensus       246 ~G~~~~~~~ai~~~r~gG~v~~vG  269 (350)
T COG1063         246 VGSPPALDQALEALRPGGTVVVVG  269 (350)
T ss_pred             CCCHHHHHHHHHHhcCCCEEEEEe
Confidence            774444467889999999998853

>KOG1562|consensus

Probab=95.32  E-value=0.057  Score=44.26  Aligned_cols=95  Identities=15%  Similarity=0.163  Sum_probs=70.9

Q ss_pred             CCCCeEEEE-ccccHHHHHHhc--cCCcEEEEeCCHHHHHhcc--cc----cCCCCCeEEEEccCCCCCC--CCCCccEE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPT--FIPNSFNINVYYYLSGGPL--SS----TIDPDHDYDLIADGRASFG--DNGPYDAI   93 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~--~~~~V~aiD~~~~~~~~A~--~~----~~~~~nV~~~~gD~~~~~~--~~~~fD~I   93 (165)
                      ...++||=| -|-|-+....++  .++.+.-+|+++..++..+  +.    ...-+.|.+..||+...+.  ..++||+|
T Consensus       120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi  199 (337)
T KOG1562|consen  120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI  199 (337)
T ss_pred             CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence            456889999 888766655444  3578999999999999885  22    2233469999999865332  25799999


Q ss_pred             EEcCCCCCchH----------HHHhccccCcEEEEE
Q psy8015          94 HVGAAYPRYPE----------IFIHHLKSGGRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~----------~l~~~LkpgG~lvi~  119 (165)
                      +.+.+.+..|.          .+.+.||++|.++..
T Consensus       200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q  235 (337)
T KOG1562|consen  200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ  235 (337)
T ss_pred             EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence            99988887663          467999999998875

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=95.24  E-value=0.073  Score=43.85  Aligned_cols=86  Identities=9%  Similarity=-0.099  Sum_probs=51.8

Q ss_pred             CCCCeEEEE-c-cccHHHHHHhcc---CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          25 SKRLDCLAL-T-SNTKQSTTLPTF---IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        25 ~~~~~vLei-~-GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      +++++||=+ + |.|.++..+++.   ..+|+++|.+++-++.|+.  ++..  ..+ .+    +.+...+|+||=....
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~--~~~~--~~~-~~----~~~~~g~d~viD~~G~  232 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF--ADET--YLI-DD----IPEDLAVDHAFECVGG  232 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh--cCce--eeh-hh----hhhccCCcEEEECCCC
Confidence            678999866 3 234444555553   2479999999988887752  2321  111 11    1122248988754442


Q ss_pred             ---CCchHHHHhccccCcEEEEE
Q psy8015         100 ---PRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus       100 ---~~~p~~l~~~LkpgG~lvi~  119 (165)
                         +...+...+.|++||++++.
T Consensus       233 ~~~~~~~~~~~~~l~~~G~iv~~  255 (341)
T cd08237         233 RGSQSAINQIIDYIRPQGTIGLM  255 (341)
T ss_pred             CccHHHHHHHHHhCcCCcEEEEE
Confidence               22335567999999998864

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=95.17  E-value=0.086  Score=42.11  Aligned_cols=94  Identities=9%  Similarity=-0.046  Sum_probs=56.3

Q ss_pred             CCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEc--cCCCCCCCCCCccEEEEcCC
Q psy8015          25 SKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIA--DGRASFGDNGPYDAIHVGAA   98 (165)
Q Consensus        25 ~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g--D~~~~~~~~~~fD~I~i~~~   98 (165)
                      .++++||=.  .+.|..++.+|+..+  +|+++|.+++..+.|+  ++|.+.+--...  +..........+|+++-...
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~--~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G  196 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELAL--SFGATALAEPEVLAERQGGLQNGRGVDVALEFSG  196 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH--HcCCcEecCchhhHHHHHHHhCCCCCCEEEECCC
Confidence            578999877  334555566666543  4999999998888775  234322110000  00001112235898876554


Q ss_pred             CCCchHHHHhccccCcEEEEEe
Q psy8015          99 YPRYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        99 ~~~~p~~l~~~LkpgG~lvi~~  120 (165)
                      .+...+...+.|+++|+++..-
T Consensus       197 ~~~~~~~~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       197 ATAAVRACLESLDVGGTAVLAG  218 (280)
T ss_pred             ChHHHHHHHHHhcCCCEEEEec
Confidence            4444556679999999998743

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.08  E-value=0.098  Score=42.46  Aligned_cols=84  Identities=18%  Similarity=0.186  Sum_probs=53.5

Q ss_pred             CCCCeEEEE-c-cccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015          25 SKRLDCLAL-T-SNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP  100 (165)
Q Consensus        25 ~~~~~vLei-~-GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~  100 (165)
                      .++++||=+ + |.|.++..+|+..+  .|+++|.+++.++.|..  ...     +  |..+.  ....||+||=..+.+
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~--~~~-----i--~~~~~--~~~g~Dvvid~~G~~  211 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG--YEV-----L--DPEKD--PRRDYRAIYDASGDP  211 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh--ccc-----c--Chhhc--cCCCCCEEEECCCCH
Confidence            467888877 3 34566676776543  47788999888776641  111     1  11000  124689887665555


Q ss_pred             CchHHHHhccccCcEEEEE
Q psy8015         101 RYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus       101 ~~p~~l~~~LkpgG~lvi~  119 (165)
                      ...+...+.|+++|+++..
T Consensus       212 ~~~~~~~~~l~~~G~iv~~  230 (308)
T TIGR01202       212 SLIDTLVRRLAKGGEIVLA  230 (308)
T ss_pred             HHHHHHHHhhhcCcEEEEE
Confidence            5556778999999999864

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=95.02  E-value=0.058  Score=44.60  Aligned_cols=94  Identities=6%  Similarity=-0.046  Sum_probs=57.0

Q ss_pred             CCCCCeEEEE-c-cccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCe-EEEEccCCC---CCCCCCCccEEEE
Q psy8015          24 HSKRLDCLAL-T-SNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRA---SFGDNGPYDAIHV   95 (165)
Q Consensus        24 ~~~~~~vLei-~-GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~---~~~~~~~fD~I~i   95 (165)
                      ..++++||=. + +.|..+..+|+..+  +|+++|.+++..+.++  ++|.+.+ .....|..+   .......+|+++-
T Consensus       174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~--~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid  251 (358)
T TIGR03451       174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR--EFGATHTVNSSGTDPVEAIRALTGGFGADVVID  251 (358)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH--HcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEE
Confidence            4689999977 3 33555666776654  5999999999888874  3454321 111111110   0112235898876


Q ss_pred             cCCCCCchHHHHhccccCcEEEEE
Q psy8015          96 GAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        96 ~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ..+.+..-+..++.|++||++++.
T Consensus       252 ~~g~~~~~~~~~~~~~~~G~iv~~  275 (358)
T TIGR03451       252 AVGRPETYKQAFYARDLAGTVVLV  275 (358)
T ss_pred             CCCCHHHHHHHHHHhccCCEEEEE
Confidence            544333445567899999998874

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=95.02  E-value=0.08  Score=43.48  Aligned_cols=77  Identities=6%  Similarity=-0.072  Sum_probs=40.3

Q ss_pred             CeEEEE-ccccHH-HHHHhccCC-cEEEEeCCHHHHHhcc--cccC-CCC-CeEEEEccCC----CCC-CCCCCccEEEE
Q psy8015          28 LDCLAL-TSNTKQ-STTLPTFIP-NSFNINVYYYLSGGPL--SSTI-DPD-HDYDLIADGR----ASF-GDNGPYDAIHV   95 (165)
Q Consensus        28 ~~vLei-~GsG~~-t~~la~~~~-~V~aiD~~~~~~~~A~--~~~~-~~~-nV~~~~gD~~----~~~-~~~~~fD~I~i   95 (165)
                      -++||| ||+-.. ....++..+ +++|.|+|+..++.|+  .+.. +++ .|+++...-.    .+. .+.+.||...|
T Consensus       104 v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmC  183 (299)
T PF05971_consen  104 VRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMC  183 (299)
T ss_dssp             -EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE
T ss_pred             eEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEec
Confidence            479999 766533 333334334 7999999999999996  4443 554 5888765432    222 22368999999


Q ss_pred             cCCCCCchH
Q psy8015          96 GAAYPRYPE  104 (165)
Q Consensus        96 ~~~~~~~p~  104 (165)
                      +..+..-.+
T Consensus       184 NPPFy~s~~  192 (299)
T PF05971_consen  184 NPPFYSSQE  192 (299)
T ss_dssp             -----SS--
T ss_pred             CCccccChh
Confidence            877654333

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG4589|consensus

Probab=94.96  E-value=0.21  Score=38.61  Aligned_cols=89  Identities=15%  Similarity=0.115  Sum_probs=61.3

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcccccCCCCCeEEEEc-cCC---------CCCCCCCCc
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPLSSTIDPDHDYDLIA-DGR---------ASFGDNGPY   90 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g-D~~---------~~~~~~~~f   90 (165)
                      .|+++|||+ +..|..+...-+.+   +.|.++|+-.         -+-.+.+.++.+ |..         +.+ +..+.
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p~~Ga~~i~~~dvtdp~~~~ki~e~l-p~r~V  137 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEPPEGATIIQGNDVTDPETYRKIFEAL-PNRPV  137 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccCCCCcccccccccCCHHHHHHHHHhC-CCCcc
Confidence            689999999 99999999888876   6899999743         112334566666 432         122 24689


Q ss_pred             cEEEEcCCCC----CchH---------H----HHhccccCcEEEEEecCC
Q psy8015          91 DAIHVGAAYP----RYPE---------I----FIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        91 D~I~i~~~~~----~~p~---------~----l~~~LkpgG~lvi~~~~~  123 (165)
                      |+|+.+.+..    .+.|         .    ....++|+|.+++=+.+.
T Consensus       138 dvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g  187 (232)
T KOG4589|consen  138 DVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG  187 (232)
T ss_pred             cEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence            9999885542    2222         1    247789999999987643

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=94.79  E-value=0.022  Score=46.39  Aligned_cols=68  Identities=7%  Similarity=0.044  Sum_probs=52.7

Q ss_pred             CCeEEEEcccc---HHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCC--CCccEEEE
Q psy8015          27 RLDCLALTSNT---KQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDN--GPYDAIHV   95 (165)
Q Consensus        27 ~~~vLei~GsG---~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~--~~fD~I~i   95 (165)
                      |++++=+ |--   .+++.|..+..+|.-+|+++.++...+  .+++|++|++.+.-|..+++|++  ..||+++-
T Consensus       153 gK~I~vv-GDDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiT  227 (354)
T COG1568         153 GKEIFVV-GDDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFIT  227 (354)
T ss_pred             CCeEEEE-cCchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeec
Confidence            5556655 433   344556666689999999999999885  67889999999999999888863  78996544

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.77  E-value=0.21  Score=44.03  Aligned_cols=95  Identities=9%  Similarity=0.032  Sum_probs=60.0

Q ss_pred             CCCCeEEEE-ccc-cHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEcc---CC-----C---C-------
Q psy8015          25 SKRLDCLAL-TSN-TKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIAD---GR-----A---S-------   83 (165)
Q Consensus        25 ~~~~~vLei-~Gs-G~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD---~~-----~---~-------   83 (165)
                      .++++|+=+ +|. |-.++..|+.. .+|+++|.+++..+.++  ++|.+.+.+-..+   ..     +   .       
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae--slGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~  240 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE--SMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA  240 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--HcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence            478999999 553 55555566554 48999999999999885  2444322211111   00     0   0       


Q ss_pred             -CCC-CCCccEEEEcCCCCC-----c-hHHHHhccccCcEEEEEec
Q psy8015          84 -FGD-NGPYDAIHVGAAYPR-----Y-PEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        84 -~~~-~~~fD~I~i~~~~~~-----~-p~~l~~~LkpgG~lvi~~~  121 (165)
                       +.+ ...+|+++-+...+.     . .++..+.+||||+++..-.
T Consensus       241 ~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        241 LFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence             011 136999988876532     3 4778899999999887543

>KOG1227|consensus

Probab=94.76  E-value=0.019  Score=47.12  Aligned_cols=97  Identities=14%  Similarity=0.035  Sum_probs=61.9

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHH-HHhcc-CCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCC
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQST-TLPTF-IPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDN   87 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~-~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~   87 (165)
                      -+|++.+-.   .++.|.|+ +|.||+|. -+-+. +..|+|+|.+|..++.-|  ++..+. +...++.||-.. ....
T Consensus       185 K~Rv~~~sc---~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~-~~~~  260 (351)
T KOG1227|consen  185 KKRVLNTSC---DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN-PKPR  260 (351)
T ss_pred             HHHhhhccc---ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc-cCcc
Confidence            445555542   36999999 99999997 44443 468999999999999775  222221 123445677543 3345


Q ss_pred             CCccEEEEcCCCC---CchHHHHhccccCcE
Q psy8015          88 GPYDAIHVGAAYP---RYPEIFIHHLKSGGR  115 (165)
Q Consensus        88 ~~fD~I~i~~~~~---~~p~~l~~~LkpgG~  115 (165)
                      ...|.|.++--..   .-|-. .+.|||.|-
T Consensus       261 ~~AdrVnLGLlPSse~~W~~A-~k~Lk~egg  290 (351)
T KOG1227|consen  261 LRADRVNLGLLPSSEQGWPTA-IKALKPEGG  290 (351)
T ss_pred             ccchheeeccccccccchHHH-HHHhhhcCC
Confidence            6789998874332   23444 467777443

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=94.65  E-value=0.062  Score=44.70  Aligned_cols=93  Identities=8%  Similarity=-0.097  Sum_probs=57.5

Q ss_pred             CCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCe-EEEEccCCC---CCCCCCCccEEEE
Q psy8015          24 HSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRA---SFGDNGPYDAIHV   95 (165)
Q Consensus        24 ~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~---~~~~~~~fD~I~i   95 (165)
                      .+++++||=.  .+.|..+..+|+..+  +|+++|.+++-.+.|+  ++|.+.+ .....|..+   .... +.+|+++-
T Consensus       189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~--~~Ga~~~i~~~~~~~~~~i~~~~~-~g~d~vid  265 (371)
T cd08281         189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR--ELGATATVNAGDPNAVEQVRELTG-GGVDYAFE  265 (371)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH--HcCCceEeCCCchhHHHHHHHHhC-CCCCEEEE
Confidence            4678998887  344566666676653  6999999999888774  3454321 111111100   0111 26898876


Q ss_pred             cCCCCCchHHHHhccccCcEEEEE
Q psy8015          96 GAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        96 ~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ....+...+...+.|+++|+++..
T Consensus       266 ~~G~~~~~~~~~~~l~~~G~iv~~  289 (371)
T cd08281         266 MAGSVPALETAYEITRRGGTTVTA  289 (371)
T ss_pred             CCCChHHHHHHHHHHhcCCEEEEE
Confidence            544444455667899999998874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>KOG4058|consensus

Probab=94.51  E-value=0.087  Score=39.22  Aligned_cols=105  Identities=12%  Similarity=0.080  Sum_probs=75.4

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccc--cCCC-CCeEEEEccCCCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSS--TIDP-DHDYDLIADGRASFG   85 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~--~~~~-~nV~~~~gD~~~~~~   85 (165)
                      ..+++..+.++.. .|..+.+|+ +|.|-.-...++-+ ..-+++|+++-++..+|+.  +.|. ....|..-|....  
T Consensus        58 teQv~nVLSll~~-n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~--  134 (199)
T KOG4058|consen   58 TEQVENVLSLLRG-NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV--  134 (199)
T ss_pred             HHHHHHHHHHccC-CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc--
Confidence            3567778888865 677899999 99998887777766 6789999999999999732  2344 3588888887652  


Q ss_pred             CCCCccEEEEcCCCCCch---HHHHhccccCcEEEE
Q psy8015          86 DNGPYDAIHVGAAYPRYP---EIFIHHLKSGGRLVI  118 (165)
Q Consensus        86 ~~~~fD~I~i~~~~~~~p---~~l~~~LkpgG~lvi  118 (165)
                      +..+|.-+++-++..-+|   +++...+..|-+++.
T Consensus       135 dl~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vva  170 (199)
T KOG4058|consen  135 DLRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVA  170 (199)
T ss_pred             cccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEE
Confidence            234566666666554444   466666777777665

>KOG0024|consensus

Probab=94.50  E-value=0.13  Score=42.68  Aligned_cols=94  Identities=10%  Similarity=-0.064  Sum_probs=64.7

Q ss_pred             CCCCeEEEE-cc-ccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccC--------CCCCCCCCCccE
Q psy8015          25 SKRLDCLAL-TS-NTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADG--------RASFGDNGPYDA   92 (165)
Q Consensus        25 ~~~~~vLei-~G-sG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~--------~~~~~~~~~fD~   92 (165)
                      ++|.+||=+ +| .|-.|...|+..  .+|+.+|.++..++.|+.  +|.+.+.......        .+.......||+
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~--~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~  245 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK--FGATVTDPSSHKSSPQELAELVEKALGKKQPDV  245 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH--hCCeEEeeccccccHHHHHHHHHhhccccCCCe
Confidence            689999999 66 477777777765  599999999999999963  5654443333321        011111245898


Q ss_pred             EEEcCCCCCchHHHHhccccCcEEEEEe
Q psy8015          93 IHVGAAYPRYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        93 I~i~~~~~~~p~~l~~~LkpgG~lvi~~  120 (165)
                      .|-....+--.+.....+|.||.+++.-
T Consensus       246 ~~dCsG~~~~~~aai~a~r~gGt~vlvg  273 (354)
T KOG0024|consen  246 TFDCSGAEVTIRAAIKATRSGGTVVLVG  273 (354)
T ss_pred             EEEccCchHHHHHHHHHhccCCEEEEec
Confidence            8877666655556678999999966643

>KOG1501|consensus

Probab=94.45  E-value=0.051  Score=46.93  Aligned_cols=87  Identities=11%  Similarity=-0.009  Sum_probs=56.7

Q ss_pred             eEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCC---C------CCCCCCccEEE
Q psy8015          29 DCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRA---S------FGDNGPYDAIH   94 (165)
Q Consensus        29 ~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~---~------~~~~~~fD~I~   94 (165)
                      .|||| ||||-++...++.+ ..|+|+|.-..|.+.||  ..+.|. +++.++.--..+   +      ..-.+-||-=+
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtEl  148 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTEL  148 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhhh
Confidence            48999 99999999888876 68999999999999997  445564 457776533221   1      11113455444


Q ss_pred             Ec-CCCCCchHHHHhccccCcE
Q psy8015          95 VG-AAYPRYPEIFIHHLKSGGR  115 (165)
Q Consensus        95 i~-~~~~~~p~~l~~~LkpgG~  115 (165)
                      ++ ++.+.+-...-.+++||=+
T Consensus       149 igeGalps~qhAh~~L~~~nc~  170 (636)
T KOG1501|consen  149 IGEGALPSLQHAHDMLLVDNCK  170 (636)
T ss_pred             hccccchhHHHHHHHhcccCCe
Confidence            43 3556555555455555533

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=94.36  E-value=0.16  Score=41.24  Aligned_cols=91  Identities=11%  Similarity=0.054  Sum_probs=56.4

Q ss_pred             CCCCeEEEE-ccc-cHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEcc---CCCCCCCCCCccEEEEcC
Q psy8015          25 SKRLDCLAL-TSN-TKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIAD---GRASFGDNGPYDAIHVGA   97 (165)
Q Consensus        25 ~~~~~vLei-~Gs-G~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD---~~~~~~~~~~fD~I~i~~   97 (165)
                      .++++||-. +|. |..+..+++..+  +|++++.+++..+.++  .++.+.  ++..+   ........+.+|.++-..
T Consensus       164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~--~~g~~~--vi~~~~~~~~~~~~~~~~vd~vld~~  239 (339)
T cd08232         164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVAR--AMGADE--TVNLARDPLAAYAADKGDFDVVFEAS  239 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH--HcCCCE--EEcCCchhhhhhhccCCCccEEEECC
Confidence            378899888 554 667666776543  6899999988887553  233322  11111   111111224599888755


Q ss_pred             CCCCchHHHHhccccCcEEEEE
Q psy8015          98 AYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        98 ~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ......+..++.|+++|+++..
T Consensus       240 g~~~~~~~~~~~L~~~G~~v~~  261 (339)
T cd08232         240 GAPAALASALRVVRPGGTVVQV  261 (339)
T ss_pred             CCHHHHHHHHHHHhcCCEEEEE
Confidence            4333445678999999998874

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=94.11  E-value=0.16  Score=42.03  Aligned_cols=97  Identities=12%  Similarity=-0.022  Sum_probs=62.6

Q ss_pred             CCCCCeEEEE---ccccHHHHHHhccCC-cEEEEeCCHHHHHhcccccCCCCC-eEEEEccCCCC---CCCCCCccEEEE
Q psy8015          24 HSKRLDCLAL---TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPLSSTIDPDH-DYDLIADGRAS---FGDNGPYDAIHV   95 (165)
Q Consensus        24 ~~~~~~vLei---~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~~~~~n-V~~~~gD~~~~---~~~~~~fD~I~i   95 (165)
                      .+++++||=.   .|.|.++..||+..+ +++++--+++-.+.+  +++|.+. +.+...|..+.   +.....+|+|+-
T Consensus       140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~--~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D  217 (326)
T COG0604         140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELL--KELGADHVINYREEDFVEQVRELTGGKGVDVVLD  217 (326)
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHH--HhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEE
Confidence            4789999988   445577777888776 887777777666544  4556543 33344432221   122246998877


Q ss_pred             cCCCCCchHHHHhccccCcEEEEEecCC
Q psy8015          96 GAAYPRYPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        96 ~~~~~~~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      .-..+...+ ..+.|+++|+++..-...
T Consensus       218 ~vG~~~~~~-~l~~l~~~G~lv~ig~~~  244 (326)
T COG0604         218 TVGGDTFAA-SLAALAPGGRLVSIGALS  244 (326)
T ss_pred             CCCHHHHHH-HHHHhccCCEEEEEecCC
Confidence            665555555 568999999999866544

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=93.94  E-value=0.68  Score=36.37  Aligned_cols=92  Identities=12%  Similarity=-0.022  Sum_probs=57.0

Q ss_pred             cCCCCCeEEEE-ccc-cHHHHHHhccC-Cc-EEEEeCCHHHHHhcccccCC-CCCeEEEEccCCCCCCCCCCccEEEEcC
Q psy8015          23 GHSKRLDCLAL-TSN-TKQSTTLPTFI-PN-SFNINVYYYLSGGPLSSTID-PDHDYDLIADGRASFGDNGPYDAIHVGA   97 (165)
Q Consensus        23 ~~~~~~~vLei-~Gs-G~~t~~la~~~-~~-V~aiD~~~~~~~~A~~~~~~-~~nV~~~~gD~~~~~~~~~~fD~I~i~~   97 (165)
                      ...+++++|-. +|. |..+..+|+.. .+ |++++.+++..+.++  +.| .+.+.....+    ......+|.++-..
T Consensus        94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~--~~g~~~~~~~~~~~----~~~~~~~d~vl~~~  167 (277)
T cd08255          94 EPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAE--ALGPADPVAADTAD----EIGGRGADVVIEAS  167 (277)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHH--HcCCCccccccchh----hhcCCCCCEEEEcc
Confidence            34678999888 543 55666666654 35 999999988887664  223 1211111111    11234699888654


Q ss_pred             CCCCchHHHHhccccCcEEEEEe
Q psy8015          98 AYPRYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        98 ~~~~~p~~l~~~LkpgG~lvi~~  120 (165)
                      ......+..++.|+++|+++..-
T Consensus       168 ~~~~~~~~~~~~l~~~g~~~~~g  190 (277)
T cd08255         168 GSPSALETALRLLRDRGRVVLVG  190 (277)
T ss_pred             CChHHHHHHHHHhcCCcEEEEEe
Confidence            44444556679999999988743

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=93.91  E-value=0.28  Score=39.94  Aligned_cols=94  Identities=12%  Similarity=0.032  Sum_probs=55.5

Q ss_pred             CCCCCeEEEE-c-cccHHHHHHhccC-Cc-EEEEeCCHHHHHhcccccCCCCCe-EEEEccCCC--CCCCCCCccEEEEc
Q psy8015          24 HSKRLDCLAL-T-SNTKQSTTLPTFI-PN-SFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRA--SFGDNGPYDAIHVG   96 (165)
Q Consensus        24 ~~~~~~vLei-~-GsG~~t~~la~~~-~~-V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~--~~~~~~~fD~I~i~   96 (165)
                      ..++++||=. + +.|..+..+++.. .+ |++++.+++-.+.++  ++|.+.+ .....+...  .......||+++-.
T Consensus       161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~--~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~  238 (339)
T cd08239         161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAK--ALGADFVINSGQDDVQEIRELTSGAGADVAIEC  238 (339)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH--HhCCCEEEcCCcchHHHHHHHhCCCCCCEEEEC
Confidence            4679999877 3 3344445555544 35 999999998887764  3454321 111111000  11122369988765


Q ss_pred             CCCCCchHHHHhccccCcEEEEE
Q psy8015          97 AAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        97 ~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      .......+...+.|+++|+++..
T Consensus       239 ~g~~~~~~~~~~~l~~~G~~v~~  261 (339)
T cd08239         239 SGNTAARRLALEAVRPWGRLVLV  261 (339)
T ss_pred             CCCHHHHHHHHHHhhcCCEEEEE
Confidence            55444445567899999998874

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=93.78  E-value=0.31  Score=40.08  Aligned_cols=94  Identities=12%  Similarity=0.001  Sum_probs=55.2

Q ss_pred             CCCCCeEEEE-ccc-cHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCe-EEEEcc---CCC---CCCCCCCcc--
Q psy8015          24 HSKRLDCLAL-TSN-TKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHD-YDLIAD---GRA---SFGDNGPYD--   91 (165)
Q Consensus        24 ~~~~~~vLei-~Gs-G~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD---~~~---~~~~~~~fD--   91 (165)
                      ..++++||=. +|+ |..+..+|+.. .+|+++|.+++..+.++  ++|.+.+ .....|   ..+   .+.....+|  
T Consensus       164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~--~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~  241 (349)
T TIGR03201       164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMK--GFGADLTLNPKDKSAREVKKLIKAFAKARGLRST  241 (349)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH--HhCCceEecCccccHHHHHHHHHhhcccCCCCCC
Confidence            4678999888 543 66667777765 37999999999888774  3454321 111111   000   011112344  


Q ss_pred             --EEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          92 --AIHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        92 --~I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                        .|+-..+.....+...+.|++||+++..
T Consensus       242 ~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~  271 (349)
T TIGR03201       242 GWKIFECSGSKPGQESALSLLSHGGTLVVV  271 (349)
T ss_pred             cCEEEECCCChHHHHHHHHHHhcCCeEEEE
Confidence              5654444344455567899999999764

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=93.69  E-value=0.39  Score=38.44  Aligned_cols=96  Identities=9%  Similarity=-0.010  Sum_probs=59.2

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      .+..+|+|| ||.==++...-...  ..++|+|+|..+++..+  +..++. +.++...|.....+ ..+.|+.++-=..
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~~-~~~~DlaLllK~l  181 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDPP-KEPADLALLLKTL  181 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSHT-TSEESEEEEET-H
T ss_pred             CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccCC-CCCcchhhHHHHH
Confidence            347999999 98887776555543  38999999999999986  566664 57778888876533 4678999885443


Q ss_pred             CCchH-------HHHhccccCcEEEEEecCC
Q psy8015         100 PRYPE-------IFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus       100 ~~~p~-------~l~~~LkpgG~lvi~~~~~  123 (165)
                      |-+..       .+.+.++- =.+++..++.
T Consensus       182 p~le~q~~g~g~~ll~~~~~-~~~vVSfPtr  211 (251)
T PF07091_consen  182 PCLERQRRGAGLELLDALRS-PHVVVSFPTR  211 (251)
T ss_dssp             HHHHHHSTTHHHHHHHHSCE-SEEEEEEES-
T ss_pred             HHHHHHhcchHHHHHHHhCC-CeEEEecccc
Confidence            32221       23444432 3556666543

>PLN02740 Alcohol dehydrogenase-like

Probab=93.55  E-value=0.28  Score=41.02  Aligned_cols=92  Identities=7%  Similarity=-0.107  Sum_probs=57.6

Q ss_pred             cCCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEcc-----CCC---CCCCCCCc
Q psy8015          23 GHSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIAD-----GRA---SFGDNGPY   90 (165)
Q Consensus        23 ~~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD-----~~~---~~~~~~~f   90 (165)
                      ..+++++||=.  .+.|..+..+|+..+  +|+++|.+++..+.|+  ++|.+.  ++..+     ..+   .... +.+
T Consensus       195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~--~~Ga~~--~i~~~~~~~~~~~~v~~~~~-~g~  269 (381)
T PLN02740        195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGK--EMGITD--FINPKDSDKPVHERIREMTG-GGV  269 (381)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHH--HcCCcE--EEecccccchHHHHHHHHhC-CCC
Confidence            34788999888  334555566666553  6999999999888884  345432  22111     100   1111 269


Q ss_pred             cEEEEcCCCCCchHHHHhccccC-cEEEEE
Q psy8015          91 DAIHVGAAYPRYPEIFIHHLKSG-GRLVIP  119 (165)
Q Consensus        91 D~I~i~~~~~~~p~~l~~~Lkpg-G~lvi~  119 (165)
                      |+++-..+.+...+..++.+++| |++++.
T Consensus       270 dvvid~~G~~~~~~~a~~~~~~g~G~~v~~  299 (381)
T PLN02740        270 DYSFECAGNVEVLREAFLSTHDGWGLTVLL  299 (381)
T ss_pred             CEEEECCCChHHHHHHHHhhhcCCCEEEEE
Confidence            98877655555555666889997 998763

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=93.46  E-value=0.71  Score=37.67  Aligned_cols=95  Identities=11%  Similarity=0.004  Sum_probs=57.9

Q ss_pred             cCCCCCeEEEE-ccc-cHHHHHHhccCC-c-EEEEeCCHHHHHhcccccCCCCCeE-EEEccC------CCCCCCCCCcc
Q psy8015          23 GHSKRLDCLAL-TSN-TKQSTTLPTFIP-N-SFNINVYYYLSGGPLSSTIDPDHDY-DLIADG------RASFGDNGPYD   91 (165)
Q Consensus        23 ~~~~~~~vLei-~Gs-G~~t~~la~~~~-~-V~aiD~~~~~~~~A~~~~~~~~nV~-~~~gD~------~~~~~~~~~fD   91 (165)
                      ...++++||-. +|+ |..+..+|+..+ + |++++.+++..+.++  .++.+++- ...-+.      ...+.....||
T Consensus       159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~--~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d  236 (343)
T cd05285         159 GVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAK--ELGATHTVNVRTEDTPESAEKIAELLGGKGPD  236 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH--HcCCcEEeccccccchhHHHHHHHHhCCCCCC
Confidence            34788999887 443 777777777654 5 999998888776653  23433211 111110      00112234599


Q ss_pred             EEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          92 AIHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        92 ~I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +|+-............+.|+++|+++..
T Consensus       237 ~vld~~g~~~~~~~~~~~l~~~G~~v~~  264 (343)
T cd05285         237 VVIECTGAESCIQTAIYATRPGGTVVLV  264 (343)
T ss_pred             EEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            8886544433455668999999998764

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.25  E-value=0.27  Score=33.77  Aligned_cols=85  Identities=8%  Similarity=0.021  Sum_probs=58.3

Q ss_pred             ccccHHHHHHhccC---C-cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--C--CCCCCccEEEEcCCCCCch--
Q psy8015          34 TSNTKQSTTLPTFI---P-NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--F--GDNGPYDAIHVGAAYPRYP--  103 (165)
Q Consensus        34 ~GsG~~t~~la~~~---~-~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~--~~~~~fD~I~i~~~~~~~p--  103 (165)
                      ||.|.++..+++..   + +|+.+|.+++.++.++.+  +   +.++.||+.+.  +  ......|.+++.......-  
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--~---~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~   78 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--G---VEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLL   78 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--T---SEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHH
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--c---cccccccchhhhHHhhcCccccCEEEEccCCHHHHHH
Confidence            89999998888753   4 799999999999877532  2   67999998652  1  1235789998876543211  


Q ss_pred             -HHHHhccccCcEEEEEecCC
Q psy8015         104 -EIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus       104 -~~l~~~LkpgG~lvi~~~~~  123 (165)
                       -...+.+.|..++++-..+.
T Consensus        79 ~~~~~r~~~~~~~ii~~~~~~   99 (116)
T PF02254_consen   79 IALLARELNPDIRIIARVNDP   99 (116)
T ss_dssp             HHHHHHHHTTTSEEEEEESSH
T ss_pred             HHHHHHHHCCCCeEEEEECCH
Confidence             23457778888888877643

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG1099|consensus

Probab=93.15  E-value=0.22  Score=39.69  Aligned_cols=86  Identities=16%  Similarity=0.093  Sum_probs=61.1

Q ss_pred             CCCeEEEE-ccccHHHHHHhccC-C----------cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC--------C
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFI-P----------NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF--------G   85 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~-~----------~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~--------~   85 (165)
                      .-+||.|+ +..|..+..|++.. .          +++++|+.+ |+        -++.|.-+++|....-        .
T Consensus        41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-Ma--------PI~GV~qlq~DIT~~stae~Ii~hf  111 (294)
T KOG1099|consen   41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-MA--------PIEGVIQLQGDITSASTAEAIIEHF  111 (294)
T ss_pred             hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-CC--------ccCceEEeecccCCHhHHHHHHHHh
Confidence            45899999 99999999999742 1          389999865 21        3567888889875321        1


Q ss_pred             CCCCccEEEEcCCCC-----CchH----H--------HHhccccCcEEEEEe
Q psy8015          86 DNGPYDAIHVGAAYP-----RYPE----I--------FIHHLKSGGRLVIPI  120 (165)
Q Consensus        86 ~~~~fD~I~i~~~~~-----~~p~----~--------l~~~LkpgG~lvi~~  120 (165)
                      ..++-|.|+++++..     ++.+    +        ....|||||.+|.=+
T Consensus       112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi  163 (294)
T KOG1099|consen  112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI  163 (294)
T ss_pred             CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence            235889999998764     3332    1        247899999999854

>KOG3201|consensus

Probab=93.05  E-value=0.048  Score=41.10  Aligned_cols=99  Identities=10%  Similarity=-0.071  Sum_probs=60.3

Q ss_pred             CCCCeEEEE-ccccHHH-HHHhccC--CcEEEEeCCHHHHHhcc-cc----cCCCCCeEEEEccCC--CCCCCCCCccEE
Q psy8015          25 SKRLDCLAL-TSNTKQS-TTLPTFI--PNSFNINVYYYLSGGPL-SS----TIDPDHDYDLIADGR--ASFGDNGPYDAI   93 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t-~~la~~~--~~V~aiD~~~~~~~~A~-~~----~~~~~nV~~~~gD~~--~~~~~~~~fD~I   93 (165)
                      -.|.+|||+ .|--.++ ..+|.-+  ..|.-.|=+++.++..+ ..    ..+++.+.+..-+-.  +...+..+||.|
T Consensus        28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI  107 (201)
T KOG3201|consen   28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII  107 (201)
T ss_pred             HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence            358899999 4432222 3344333  47999999999988764 21    133444444433321  122345689988


Q ss_pred             EEcCCCC------CchHHHHhccccCcEEEEEecCC
Q psy8015          94 HVGAAYP------RYPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        94 ~i~~~~~------~~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      ++....-      .+.+.+...|+|.|+-.+..+..
T Consensus       108 laADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR  143 (201)
T KOG3201|consen  108 LAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR  143 (201)
T ss_pred             EeccchhHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence            8754331      24467889999999977765543

>KOG3115|consensus

Probab=93.01  E-value=0.34  Score=37.91  Aligned_cols=96  Identities=11%  Similarity=0.077  Sum_probs=66.1

Q ss_pred             CCCeEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcc--cccC-------CCCCeEEEEccCCCCCCC---CCCc
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPL--SSTI-------DPDHDYDLIADGRASFGD---NGPY   90 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~--~~~~-------~~~nV~~~~gD~~~~~~~---~~~f   90 (165)
                      +.-.+.|| ||-|-+...||.+..  -+.+.|+..+..+..+  ++.+       .+.|+.+...++..-+|.   .+..
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL  139 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL  139 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence            44679999 999999999999873  6899998888877663  2221       277899999988654332   3444


Q ss_pred             cEEEEcCCCCC--------------chHHHHhccccCcEEEEEec
Q psy8015          91 DAIHVGAAYPR--------------YPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        91 D~I~i~~~~~~--------------~p~~l~~~LkpgG~lvi~~~  121 (165)
                      +-.|.-...++              +..+..-.|++||.++....
T Consensus       140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD  184 (249)
T KOG3115|consen  140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD  184 (249)
T ss_pred             ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence            44554433332              22345668999999998754

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=92.91  E-value=1.1  Score=35.90  Aligned_cols=87  Identities=11%  Similarity=0.123  Sum_probs=54.7

Q ss_pred             CCCCCeEEEEccccHHHHHH---hccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          24 HSKRLDCLALTSNTKQSTTL---PTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        24 ~~~~~~vLei~GsG~~t~~l---a~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      ..++++||=. |+|.++..+   ++.. .+|++++.+++..+.++  ++|.+.+.....+     .....+|+++-..+.
T Consensus       153 ~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~--~~g~~~~~~~~~~-----~~~~~~d~vid~~g~  224 (319)
T cd08242         153 ITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVLVGRHSEKLALAR--RLGVETVLPDEAE-----SEGGGFDVVVEATGS  224 (319)
T ss_pred             CCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH--HcCCcEEeCcccc-----ccCCCCCEEEECCCC
Confidence            3678888766 455555444   4433 47999999998888775  2454322211111     123569988875444


Q ss_pred             CCchHHHHhccccCcEEEE
Q psy8015         100 PRYPEIFIHHLKSGGRLVI  118 (165)
Q Consensus       100 ~~~p~~l~~~LkpgG~lvi  118 (165)
                      ....+...+.|+++|+++.
T Consensus       225 ~~~~~~~~~~l~~~g~~v~  243 (319)
T cd08242         225 PSGLELALRLVRPRGTVVL  243 (319)
T ss_pred             hHHHHHHHHHhhcCCEEEE
Confidence            3444566789999999997

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>KOG2360|consensus

Probab=92.67  E-value=0.17  Score=42.81  Aligned_cols=78  Identities=5%  Similarity=-0.075  Sum_probs=61.0

Q ss_pred             cCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC-CCC-CCCccEEE
Q psy8015          23 GHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS-FGD-NGPYDAIH   94 (165)
Q Consensus        23 ~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~-~~~-~~~fD~I~   94 (165)
                      ...+|.+|+|. |..|--|.++|.+.   ++++|.|.+++.++.-+  ++..|.++++...+|.... .++ ....-.|+
T Consensus       210 ~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~~~v~~iL  289 (413)
T KOG2360|consen  210 DPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKFRDVTYIL  289 (413)
T ss_pred             CCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCcccccceeEEE
Confidence            34789999999 99999999999875   69999999999888764  6677888888889998763 222 24556788


Q ss_pred             EcCCCC
Q psy8015          95 VGAAYP  100 (165)
Q Consensus        95 i~~~~~  100 (165)
                      ++.++.
T Consensus       290 ~DpscS  295 (413)
T KOG2360|consen  290 VDPSCS  295 (413)
T ss_pred             eCCCCC
Confidence            876553

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=92.63  E-value=0.54  Score=38.96  Aligned_cols=93  Identities=6%  Similarity=-0.069  Sum_probs=55.4

Q ss_pred             CCCCCeEEEE-c-cccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccC------CCCCCCCCCccEE
Q psy8015          24 HSKRLDCLAL-T-SNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADG------RASFGDNGPYDAI   93 (165)
Q Consensus        24 ~~~~~~vLei-~-GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~------~~~~~~~~~fD~I   93 (165)
                      ..++++||=. + +.|..++.+|+..+  +|+++|.+++-.+.++  ++|.+.+--...+.      ...... ..+|.|
T Consensus       182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~--~~ga~~~i~~~~~~~~~~~~~~~~~~-~g~d~v  258 (365)
T cd08277         182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAK--EFGATDFINPKDSDKPVSEVIREMTG-GGVDYS  258 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH--HcCCCcEeccccccchHHHHHHHHhC-CCCCEE
Confidence            4678999877 2 34455555666554  6999999998888774  34543221111100      001112 368988


Q ss_pred             EEcCCCCCchHHHHhccccC-cEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLKSG-GRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~Lkpg-G~lvi~  119 (165)
                      +-........+..++.|+++ |+++..
T Consensus       259 id~~g~~~~~~~~~~~l~~~~G~~v~~  285 (365)
T cd08277         259 FECTGNADLMNEALESTKLGWGVSVVV  285 (365)
T ss_pred             EECCCChHHHHHHHHhcccCCCEEEEE
Confidence            76544344445567889886 998875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PRK11524 putative methyltransferase; Provisional

Probab=92.60  E-value=0.16  Score=41.07  Aligned_cols=53  Identities=15%  Similarity=0.130  Sum_probs=37.5

Q ss_pred             CCCeEEEEccCCCCC--CCCCCccEEEEcCCCCC----------------------chHHHHhccccCcEEEEEecC
Q psy8015          70 PDHDYDLIADGRASF--GDNGPYDAIHVGAAYPR----------------------YPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        70 ~~nV~~~~gD~~~~~--~~~~~fD~I~i~~~~~~----------------------~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      ..+.+++++|+.+.+  -+.++||+|+++.....                      ...++.+.|||||.+++.+..
T Consensus         6 ~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~   82 (284)
T PRK11524          6 NEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST   82 (284)
T ss_pred             CCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence            345688999987632  22478999999865421                      123578999999999997653

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=92.60  E-value=0.57  Score=37.93  Aligned_cols=93  Identities=10%  Similarity=0.020  Sum_probs=56.0

Q ss_pred             cCCCCCeEEEEc---cccHHHHHHhccCC-cEEEEeCCHHHHHhcccccCCCCCeEEEEc--cCCC---CCCCCCCccEE
Q psy8015          23 GHSKRLDCLALT---SNTKQSTTLPTFIP-NSFNINVYYYLSGGPLSSTIDPDHDYDLIA--DGRA---SFGDNGPYDAI   93 (165)
Q Consensus        23 ~~~~~~~vLei~---GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g--D~~~---~~~~~~~fD~I   93 (165)
                      ...++++||=..   |.|..+..+|+..+ +|++++.+++-.+.++  ++|.+.+--...  +..+   ... .+.+|++
T Consensus       135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~--~lGa~~vi~~~~~~~~~~~~~~~~-~~gvdvv  211 (325)
T TIGR02825       135 GVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLK--KLGFDVAFNYKTVKSLEETLKKAS-PDGYDCY  211 (325)
T ss_pred             CCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--HcCCCEEEeccccccHHHHHHHhC-CCCeEEE
Confidence            346889988553   34555566666544 7999999988777664  355533211111  1110   111 2368988


Q ss_pred             EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +-..+.+ ..+..++.|+++|+++..
T Consensus       212 ~d~~G~~-~~~~~~~~l~~~G~iv~~  236 (325)
T TIGR02825       212 FDNVGGE-FSNTVIGQMKKFGRIAIC  236 (325)
T ss_pred             EECCCHH-HHHHHHHHhCcCcEEEEe
Confidence            7544433 346678999999999864

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=92.53  E-value=0.29  Score=40.13  Aligned_cols=94  Identities=9%  Similarity=0.007  Sum_probs=53.7

Q ss_pred             CCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCe-EEEEccCC--CCCCCCCCccEEEEc
Q psy8015          24 HSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGR--ASFGDNGPYDAIHVG   96 (165)
Q Consensus        24 ~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~--~~~~~~~~fD~I~i~   96 (165)
                      ..++++||=.  .+.|..+..+|+..+  .|++++.+++-.+.++  ++|.+.+ .....+..  ........+|.++++
T Consensus       158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~--~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d  235 (347)
T PRK10309        158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAK--SLGAMQTFNSREMSAPQIQSVLRELRFDQLILE  235 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH--HcCCceEecCcccCHHHHHHHhcCCCCCeEEEE
Confidence            3578899888  334455555666543  4799999998888764  3444221 11111100  011122358844454


Q ss_pred             CCC-CCchHHHHhccccCcEEEEE
Q psy8015          97 AAY-PRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        97 ~~~-~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ..- +..-+...+.|++||++++.
T Consensus       236 ~~G~~~~~~~~~~~l~~~G~iv~~  259 (347)
T PRK10309        236 TAGVPQTVELAIEIAGPRAQLALV  259 (347)
T ss_pred             CCCCHHHHHHHHHHhhcCCEEEEE
Confidence            333 33445567999999998874

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=92.45  E-value=0.27  Score=44.43  Aligned_cols=95  Identities=8%  Similarity=-0.052  Sum_probs=60.3

Q ss_pred             CCCeEEEE-ccccHHHHHHhccC--------------CcEEEEeCCH---HHHHhc-----------c-cc------cCC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFI--------------PNSFNINVYY---YLSGGP-----------L-SS------TID   69 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~--------------~~V~aiD~~~---~~~~~A-----------~-~~------~~~   69 (165)
                      +.-+|||+ =|+|+......+..              =+.+++|.+|   +-+..+           + +.      ..|
T Consensus        57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g  136 (662)
T PRK01747         57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG  136 (662)
T ss_pred             CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence            44789999 99998765444211              1689999754   111111           1 00      012


Q ss_pred             C-------C--CeEEEEccCCCCCCCC-CCccEEEEcCCCC-Cch--------HHHHhccccCcEEEEEe
Q psy8015          70 P-------D--HDYDLIADGRASFGDN-GPYDAIHVGAAYP-RYP--------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        70 ~-------~--nV~~~~gD~~~~~~~~-~~fD~I~i~~~~~-~~p--------~~l~~~LkpgG~lvi~~  120 (165)
                      .       .  ++++..||+.+.++.. ..||++|.++-.+ .-|        ..+.+.++|||++.-..
T Consensus       137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t  206 (662)
T PRK01747        137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT  206 (662)
T ss_pred             ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence            1       1  3567889987655543 5699999997554 333        35778999999998764

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=92.11  E-value=0.66  Score=37.98  Aligned_cols=94  Identities=9%  Similarity=-0.103  Sum_probs=57.5

Q ss_pred             CCCCCeEEEE-cc-ccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCe-EEEEccCCC---CCCCCCCccEEEE
Q psy8015          24 HSKRLDCLAL-TS-NTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRA---SFGDNGPYDAIHV   95 (165)
Q Consensus        24 ~~~~~~vLei-~G-sG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~---~~~~~~~fD~I~i   95 (165)
                      .+++++||=. +| .|..++.+|+..+  +|+++|.+++..+.++  .+|.+.+ .....+...   .......+|.++-
T Consensus       164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~--~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld  241 (351)
T cd08285         164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK--EYGATDIVDYKNGDVVEQILKLTGGKGVDAVII  241 (351)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH--HcCCceEecCCCCCHHHHHHHHhCCCCCcEEEE
Confidence            4678999888 33 4566666676543  5999999998877775  3444321 111111100   1112246998886


Q ss_pred             cCCCCCchHHHHhccccCcEEEEE
Q psy8015          96 GAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        96 ~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ...........++.|+++|+++..
T Consensus       242 ~~g~~~~~~~~~~~l~~~G~~v~~  265 (351)
T cd08285         242 AGGGQDTFEQALKVLKPGGTISNV  265 (351)
T ss_pred             CCCCHHHHHHHHHHhhcCCEEEEe
Confidence            544444556678999999998864

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=91.98  E-value=0.76  Score=37.29  Aligned_cols=95  Identities=14%  Similarity=0.053  Sum_probs=59.0

Q ss_pred             cCCCCCeEEEE-cc-ccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCe-EEEEccCCC---CCCCCCCccEEEE
Q psy8015          23 GHSKRLDCLAL-TS-NTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRA---SFGDNGPYDAIHV   95 (165)
Q Consensus        23 ~~~~~~~vLei-~G-sG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~---~~~~~~~fD~I~i   95 (165)
                      ...++++||-. +| .|..++.+|+.. .+|+++..+++..+.++  .++.+.+ .....+..+   .......+|.++-
T Consensus       156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~--~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld  233 (337)
T cd08261         156 GVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAR--ELGADDTINVGDEDVAARLRELTDGEGADVVID  233 (337)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHH--HhCCCEEecCcccCHHHHHHHHhCCCCCCEEEE
Confidence            34688999998 54 377777777764 58999988888777663  2333221 111111101   1112345998887


Q ss_pred             cCCCCCchHHHHhccccCcEEEEE
Q psy8015          96 GAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        96 ~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ...........++.|+++|+++..
T Consensus       234 ~~g~~~~~~~~~~~l~~~G~~i~~  257 (337)
T cd08261         234 ATGNPASMEEAVELVAHGGRVVLV  257 (337)
T ss_pred             CCCCHHHHHHHHHHHhcCCEEEEE
Confidence            644444556678999999998864

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=91.96  E-value=0.91  Score=37.55  Aligned_cols=93  Identities=14%  Similarity=0.049  Sum_probs=53.7

Q ss_pred             CCCCeEEEE--ccccHHHHHHhccCC-cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015          25 SKRLDCLAL--TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR  101 (165)
Q Consensus        25 ~~~~~vLei--~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~  101 (165)
                      .++++||=.  .+.|..+..+|+..+ +|+.++.+++..+.+. +.+|.+.+ +...+..........+|.++-......
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~-~~~Ga~~~-i~~~~~~~~~~~~~~~D~vid~~g~~~  256 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEAL-EHLGADDY-LVSSDAAEMQEAADSLDYIIDTVPVFH  256 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-HhcCCcEE-ecCCChHHHHHhcCCCcEEEECCCchH
Confidence            578899877  445666666777654 6888888876554442 23454321 111111000001135898876544334


Q ss_pred             chHHHHhccccCcEEEEE
Q psy8015         102 YPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus       102 ~p~~l~~~LkpgG~lvi~  119 (165)
                      ..+...+.|+++|+++..
T Consensus       257 ~~~~~~~~l~~~G~iv~~  274 (357)
T PLN02514        257 PLEPYLSLLKLDGKLILM  274 (357)
T ss_pred             HHHHHHHHhccCCEEEEE
Confidence            445567999999998874

>cd08293 PTGR2 Prostaglandin reductase

Probab=91.89  E-value=0.87  Score=37.02  Aligned_cols=92  Identities=5%  Similarity=-0.034  Sum_probs=54.4

Q ss_pred             CCC--CeEEEE-c--cccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEE-ccCCC---CCCCCCCccEE
Q psy8015          25 SKR--LDCLAL-T--SNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLI-ADGRA---SFGDNGPYDAI   93 (165)
Q Consensus        25 ~~~--~~vLei-~--GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~-gD~~~---~~~~~~~fD~I   93 (165)
                      .++  ++||=. .  |.|..+..+|+..+  +|++++.+++..+.++. .+|.+.+-... .+..+   .... ..+|++
T Consensus       151 ~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~-~lGa~~vi~~~~~~~~~~i~~~~~-~gvd~v  228 (345)
T cd08293         151 TPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKS-ELGFDAAINYKTDNVAERLRELCP-EGVDVY  228 (345)
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH-hcCCcEEEECCCCCHHHHHHHHCC-CCceEE
Confidence            454  788766 3  45566666777654  69999999887765531 24554321111 11100   0111 469988


Q ss_pred             EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +-...... .+..++.|+++|+++..
T Consensus       229 id~~g~~~-~~~~~~~l~~~G~iv~~  253 (345)
T cd08293         229 FDNVGGEI-SDTVISQMNENSHIILC  253 (345)
T ss_pred             EECCCcHH-HHHHHHHhccCCEEEEE
Confidence            75443333 46678999999998864

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=91.80  E-value=0.45  Score=39.36  Aligned_cols=93  Identities=10%  Similarity=-0.049  Sum_probs=56.9

Q ss_pred             CCCCCeEEEE-c--cccHHHHHHhccCC-cEEEEeCCHHHHHhcccccCCCCCeE-EEEc-cCCC---CCCCCCCccEEE
Q psy8015          24 HSKRLDCLAL-T--SNTKQSTTLPTFIP-NSFNINVYYYLSGGPLSSTIDPDHDY-DLIA-DGRA---SFGDNGPYDAIH   94 (165)
Q Consensus        24 ~~~~~~vLei-~--GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~~~~~nV~-~~~g-D~~~---~~~~~~~fD~I~   94 (165)
                      ..++++||=. +  |.|..+..+|+..+ +|++++.+++-.+.++ +++|.+.+- .... |..+   .... +.+|+++
T Consensus       156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~-~~lGa~~vi~~~~~~~~~~~i~~~~~-~gvD~v~  233 (348)
T PLN03154        156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLK-NKLGFDEAFNYKEEPDLDAALKRYFP-EGIDIYF  233 (348)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HhcCCCEEEECCCcccHHHHHHHHCC-CCcEEEE
Confidence            4688999877 5  36677777777654 7999999888776553 134543221 1111 1111   1111 3589887


Q ss_pred             EcCCCCCchHHHHhccccCcEEEEE
Q psy8015          95 VGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        95 i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      -..+. ...+..++.|++||+++..
T Consensus       234 d~vG~-~~~~~~~~~l~~~G~iv~~  257 (348)
T PLN03154        234 DNVGG-DMLDAALLNMKIHGRIAVC  257 (348)
T ss_pred             ECCCH-HHHHHHHHHhccCCEEEEE
Confidence            54433 3445678999999998863

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=91.71  E-value=0.6  Score=37.97  Aligned_cols=95  Identities=12%  Similarity=0.004  Sum_probs=54.3

Q ss_pred             cCCCCCeEEEE--ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCe-EEEEccCCCCCCCCCCccEEEEcCC
Q psy8015          23 GHSKRLDCLAL--TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRASFGDNGPYDAIHVGAA   98 (165)
Q Consensus        23 ~~~~~~~vLei--~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~~~~~~~~fD~I~i~~~   98 (165)
                      ...++++||=.  .+.|..+..+|+.. .+|+.++.+++-.+.++  ++|.+.+ .....+..........+|+++-..+
T Consensus       160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~--~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g  237 (333)
T cd08296         160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLAR--KLGAHHYIDTSKEDVAEALQELGGAKLILATAP  237 (333)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH--HcCCcEEecCCCccHHHHHHhcCCCCEEEECCC
Confidence            34678888766  23344445555544 37999999988777773  3454221 1111111010111135898885433


Q ss_pred             CCCchHHHHhccccCcEEEEE
Q psy8015          99 YPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        99 ~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      .....+...+.|+++|+++..
T Consensus       238 ~~~~~~~~~~~l~~~G~~v~~  258 (333)
T cd08296         238 NAKAISALVGGLAPRGKLLIL  258 (333)
T ss_pred             chHHHHHHHHHcccCCEEEEE
Confidence            344455667999999998864

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=91.70  E-value=0.93  Score=38.31  Aligned_cols=93  Identities=6%  Similarity=-0.033  Sum_probs=55.2

Q ss_pred             cCCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEc---cCCC---CCCCCCCccE
Q psy8015          23 GHSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIA---DGRA---SFGDNGPYDA   92 (165)
Q Consensus        23 ~~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g---D~~~---~~~~~~~fD~   92 (165)
                      ...++++||=.  .+.|..+..+|+..+  .|++.|.+++..+.|+  ++|.+  .+...   +..+   .......+|+
T Consensus       182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~--~~Ga~--~v~~~~~~~~~~~v~~~~~~~g~Dv  257 (393)
T TIGR02819       182 GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQAR--SFGCE--TVDLSKDATLPEQIEQILGEPEVDC  257 (393)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHH--HcCCe--EEecCCcccHHHHHHHHcCCCCCcE
Confidence            34678888776  334455555666543  4677789888888775  34543  12211   1101   1112235898


Q ss_pred             EEEcCCCC--------------CchHHHHhccccCcEEEEE
Q psy8015          93 IHVGAAYP--------------RYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        93 I~i~~~~~--------------~~p~~l~~~LkpgG~lvi~  119 (165)
                      ++-..+.+              ...+...+.+++||++++.
T Consensus       258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~  298 (393)
T TIGR02819       258 AVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP  298 (393)
T ss_pred             EEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence            87655543              2345667999999999884

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=91.45  E-value=0.73  Score=38.29  Aligned_cols=94  Identities=9%  Similarity=-0.083  Sum_probs=57.0

Q ss_pred             CCCCCeEEEE-c-cccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCe-EEEEccC--CC---CCCCCCCccEE
Q psy8015          24 HSKRLDCLAL-T-SNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHD-YDLIADG--RA---SFGDNGPYDAI   93 (165)
Q Consensus        24 ~~~~~~vLei-~-GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~--~~---~~~~~~~fD~I   93 (165)
                      .+++++||=. + +.|..+..+|+..+  +|+++|.+++..+.|+  ++|.+.+ .....+.  .+   .... +.+|++
T Consensus       183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~--~~Ga~~~i~~~~~~~~~~~~v~~~~~-~g~d~v  259 (368)
T TIGR02818       183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAK--KLGATDCVNPNDYDKPIQEVIVEITD-GGVDYS  259 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH--HhCCCeEEcccccchhHHHHHHHHhC-CCCCEE
Confidence            4678999888 3 34556666777654  6999999999888874  3454321 1110010  00   0111 258988


Q ss_pred             EEcCCCCCchHHHHhccccC-cEEEEEe
Q psy8015          94 HVGAAYPRYPEIFIHHLKSG-GRLVIPI  120 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~Lkpg-G~lvi~~  120 (165)
                      +=....+...+...+.+++| |+++..-
T Consensus       260 id~~G~~~~~~~~~~~~~~~~G~~v~~g  287 (368)
T TIGR02818       260 FECIGNVNVMRAALECCHKGWGESIIIG  287 (368)
T ss_pred             EECCCCHHHHHHHHHHhhcCCCeEEEEe
Confidence            76544444455667899886 9987643

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=91.39  E-value=0.78  Score=37.97  Aligned_cols=94  Identities=7%  Similarity=-0.113  Sum_probs=55.4

Q ss_pred             cCCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeE-EEEc-c-CC---CCCCCCCCccE
Q psy8015          23 GHSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDY-DLIA-D-GR---ASFGDNGPYDA   92 (165)
Q Consensus        23 ~~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~-~~~g-D-~~---~~~~~~~~fD~   92 (165)
                      ...++++||=.  .+.|..+..+|+..+  +|++++.+++..+.++  ++|.+.+- .... + ..   ..... +.+|.
T Consensus       184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~--~~Ga~~~i~~~~~~~~~~~~v~~~~~-~~~d~  260 (369)
T cd08301         184 KVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAK--KFGVTEFVNPKDHDKPVQEVIAEMTG-GGVDY  260 (369)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH--HcCCceEEcccccchhHHHHHHHHhC-CCCCE
Confidence            34789999877  333445555666554  7999999999888774  34543211 1110 0 00   01111 26897


Q ss_pred             EEEcCCCCCchHHHHhccccC-cEEEEE
Q psy8015          93 IHVGAAYPRYPEIFIHHLKSG-GRLVIP  119 (165)
Q Consensus        93 I~i~~~~~~~p~~l~~~Lkpg-G~lvi~  119 (165)
                      ++=....+.......+.+++| |+++..
T Consensus       261 vid~~G~~~~~~~~~~~~~~~~g~~v~~  288 (369)
T cd08301         261 SFECTGNIDAMISAFECVHDGWGVTVLL  288 (369)
T ss_pred             EEECCCChHHHHHHHHHhhcCCCEEEEE
Confidence            765444444445567889996 998764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=91.34  E-value=0.93  Score=37.25  Aligned_cols=93  Identities=10%  Similarity=-0.013  Sum_probs=54.9

Q ss_pred             CCCCeEEEE--ccccHHHHHHhccC-C-cEEEEeCCHHHHHhcccccCCCCCeEEEEc-cC------CCCCCCCCCccEE
Q psy8015          25 SKRLDCLAL--TSNTKQSTTLPTFI-P-NSFNINVYYYLSGGPLSSTIDPDHDYDLIA-DG------RASFGDNGPYDAI   93 (165)
Q Consensus        25 ~~~~~vLei--~GsG~~t~~la~~~-~-~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g-D~------~~~~~~~~~fD~I   93 (165)
                      .++++||=.  .+.|..+..+|+.. . +|++++.+++..+.++  ++|.+.+--... +.      .........+|.+
T Consensus       176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~--~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~v  253 (361)
T cd08231         176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR--EFGADATIDIDELPDPQRRAIVRDITGGRGADVV  253 (361)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH--HcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEE
Confidence            478888877  44455555666554 3 7999999888776653  445433211111 10      0011122469988


Q ss_pred             EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +-...........++.|+++|+++..
T Consensus       254 id~~g~~~~~~~~~~~l~~~G~~v~~  279 (361)
T cd08231         254 IEASGHPAAVPEGLELLRRGGTYVLV  279 (361)
T ss_pred             EECCCChHHHHHHHHHhccCCEEEEE
Confidence            76543333445667999999999864

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=91.29  E-value=0.31  Score=41.12  Aligned_cols=98  Identities=16%  Similarity=0.066  Sum_probs=58.6

Q ss_pred             CCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc-c-ccCCCCCeEEEEccCCC---CCCCCCCccEEEEc
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL-S-STIDPDHDYDLIADGRA---SFGDNGPYDAIHVG   96 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~-~-~~~~~~nV~~~~gD~~~---~~~~~~~fD~I~i~   96 (165)
                      ..+++||+ .|.|.-.-.+-.+.   ..++-+|.|+.+-+..- + +......-.....|...   .++....|+++++.
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~  192 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL  192 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence            46789999 88775444333332   57888898887766553 1 11121122222333322   34445678888875


Q ss_pred             CCC-C----C----chHHHHhccccCcEEEEEecCC
Q psy8015          97 AAY-P----R----YPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        97 ~~~-~----~----~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      .-. +    .    +.+.++..+.|||.||+.....
T Consensus       193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt  228 (484)
T COG5459         193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT  228 (484)
T ss_pred             hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence            322 1    1    3467899999999999987543

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=91.23  E-value=1.2  Score=35.88  Aligned_cols=93  Identities=10%  Similarity=-0.007  Sum_probs=57.3

Q ss_pred             cCCCCCeEEEE-cc-ccHHHHHHhccCC-c-EEEEeCCHHHHHhcccccCCCCCeEEEEccCCC----CCCCCCCccEEE
Q psy8015          23 GHSKRLDCLAL-TS-NTKQSTTLPTFIP-N-SFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA----SFGDNGPYDAIH   94 (165)
Q Consensus        23 ~~~~~~~vLei-~G-sG~~t~~la~~~~-~-V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~----~~~~~~~fD~I~   94 (165)
                      ...++++||-. +| .|..++.+|+..+ + |+.++.+++..+.++  +++.+  .++..+...    .......+|.++
T Consensus       156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~--~~g~~--~~~~~~~~~~~~~~~~~~~~vd~v~  231 (334)
T cd08234         156 GIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAK--KLGAT--ETVDPSREDPEAQKEDNPYGFDVVI  231 (334)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH--HhCCe--EEecCCCCCHHHHHHhcCCCCcEEE
Confidence            34688999888 43 3556666666554 4 899999998877663  23432  222222111    011235699888


Q ss_pred             EcCCCCCchHHHHhccccCcEEEEE
Q psy8015          95 VGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        95 i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      -............+.|+++|+++..
T Consensus       232 ~~~~~~~~~~~~~~~l~~~G~~v~~  256 (334)
T cd08234         232 EATGVPKTLEQAIEYARRGGTVLVF  256 (334)
T ss_pred             ECCCChHHHHHHHHHHhcCCEEEEE
Confidence            6543344555667999999998764

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PLN02827 Alcohol dehydrogenase-like

Probab=91.18  E-value=0.58  Score=39.16  Aligned_cols=93  Identities=9%  Similarity=-0.071  Sum_probs=55.3

Q ss_pred             CCCCCeEEEE-c-cccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCe-EEEEc--cCCC---CCCCCCCccEE
Q psy8015          24 HSKRLDCLAL-T-SNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHD-YDLIA--DGRA---SFGDNGPYDAI   93 (165)
Q Consensus        24 ~~~~~~vLei-~-GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~g--D~~~---~~~~~~~fD~I   93 (165)
                      ..++++||=. + +.|..+..+|+..+  .|+++|.+++..+.|+  ++|.+.+ .....  +..+   .... +.+|++
T Consensus       191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~--~lGa~~~i~~~~~~~~~~~~v~~~~~-~g~d~v  267 (378)
T PLN02827        191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK--TFGVTDFINPNDLSEPIQQVIKRMTG-GGADYS  267 (378)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH--HcCCcEEEcccccchHHHHHHHHHhC-CCCCEE
Confidence            4679999877 3 34455555666544  5899999998888774  3454321 11110  1101   0111 258988


Q ss_pred             EEcCCCCCchHHHHhccccC-cEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLKSG-GRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~Lkpg-G~lvi~  119 (165)
                      +=..+.+.......+.|++| |+++..
T Consensus       268 id~~G~~~~~~~~l~~l~~g~G~iv~~  294 (378)
T PLN02827        268 FECVGDTGIATTALQSCSDGWGLTVTL  294 (378)
T ss_pred             EECCCChHHHHHHHHhhccCCCEEEEE
Confidence            76555443445667899999 999863

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=91.16  E-value=0.9  Score=37.11  Aligned_cols=103  Identities=10%  Similarity=-0.029  Sum_probs=60.7

Q ss_pred             cCCchHHHHHHHHHHhcC---CCCCeEEEEccccHHHHHHhc----cCCcEEEEeCCHHHHHhcccccCCCCCeEEEE-c
Q psy8015           7 SGSVSGAVAKYVTYLSGH---SKRLDCLALTSNTKQSTTLPT----FIPNSFNINVYYYLSGGPLSSTIDPDHDYDLI-A   78 (165)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~---~~~~~vLei~GsG~~t~~la~----~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~-g   78 (165)
                      .+|++...+.+.+.+...   -.+++|+=+ |.|..+..++.    +..+|+.+|++++..+.++  ..|.   +++. .
T Consensus       129 ~ns~~~aegav~~a~~~~~~~l~g~kvlVi-G~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~--~~G~---~~~~~~  202 (296)
T PRK08306        129 LNSIPTAEGAIMMAIEHTPITIHGSNVLVL-GFGRTGMTLARTLKALGANVTVGARKSAHLARIT--EMGL---SPFHLS  202 (296)
T ss_pred             hccHhHHHHHHHHHHHhCCCCCCCCEEEEE-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH--HcCC---eeecHH
Confidence            456666666555554321   257888877 55555544443    2358999999987665553  3343   2221 1


Q ss_pred             cCCCCCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEE
Q psy8015          79 DGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVI  118 (165)
Q Consensus        79 D~~~~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi  118 (165)
                      +..+.   ...+|+||......-+.++.++.++||+.++=
T Consensus       203 ~l~~~---l~~aDiVI~t~p~~~i~~~~l~~~~~g~vIID  239 (296)
T PRK08306        203 ELAEE---VGKIDIIFNTIPALVLTKEVLSKMPPEALIID  239 (296)
T ss_pred             HHHHH---hCCCCEEEECCChhhhhHHHHHcCCCCcEEEE
Confidence            11111   24689998865444455677888999776553

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=91.14  E-value=1.1  Score=37.81  Aligned_cols=97  Identities=12%  Similarity=-0.059  Sum_probs=56.4

Q ss_pred             CCCCCeEEEEcc---ccHHHHHHhccC----CcEEEEeCCHHHHHhcc-c-ccC----CCCCeEEEEc----cCCC---C
Q psy8015          24 HSKRLDCLALTS---NTKQSTTLPTFI----PNSFNINVYYYLSGGPL-S-STI----DPDHDYDLIA----DGRA---S   83 (165)
Q Consensus        24 ~~~~~~vLei~G---sG~~t~~la~~~----~~V~aiD~~~~~~~~A~-~-~~~----~~~nV~~~~g----D~~~---~   83 (165)
                      .+++++||=+-|   .|..+..+|+..    .+|+++|.+++.++.|+ + ...    |.+ ..++..    |..+   .
T Consensus       173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~-~~~i~~~~~~~~~~~v~~  251 (410)
T cd08238         173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE-LLYVNPATIDDLHATLME  251 (410)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce-EEEECCCccccHHHHHHH
Confidence            367888875533   445555566653    27999999999998885 2 100    221 112211    1100   0


Q ss_pred             CCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEec
Q psy8015          84 FGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        84 ~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~  121 (165)
                      +.....||.++...+.+.......+.|+++|++++..+
T Consensus       252 ~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g  289 (410)
T cd08238         252 LTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAG  289 (410)
T ss_pred             HhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEc
Confidence            11223699888765444444556799999998877544

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=91.03  E-value=2.5  Score=34.03  Aligned_cols=93  Identities=14%  Similarity=0.043  Sum_probs=56.7

Q ss_pred             CCCCCeEEEE-cc-ccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC-CCCCCccEEEEcCCC
Q psy8015          24 HSKRLDCLAL-TS-NTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF-GDNGPYDAIHVGAAY   99 (165)
Q Consensus        24 ~~~~~~vLei-~G-sG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~-~~~~~fD~I~i~~~~   99 (165)
                      ..++++||-. +| .|..+..+++.. .+|+.++.+++..+.++  ++|.+.+  +..+..... ...+.+|.++-....
T Consensus       160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~--~~g~~~~--~~~~~~~~~~~~~~~~d~vi~~~~~  235 (330)
T cd08245         160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELAR--KLGADEV--VDSGAELDEQAAAGGADVILVTVVS  235 (330)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--HhCCcEE--eccCCcchHHhccCCCCEEEECCCc
Confidence            4678899888 54 666666666654 48999999998877663  2343211  111100000 012469988765343


Q ss_pred             CCchHHHHhccccCcEEEEEe
Q psy8015         100 PRYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus       100 ~~~p~~l~~~LkpgG~lvi~~  120 (165)
                      .......++.|+++|+++...
T Consensus       236 ~~~~~~~~~~l~~~G~~i~~~  256 (330)
T cd08245         236 GAAAEAALGGLRRGGRIVLVG  256 (330)
T ss_pred             HHHHHHHHHhcccCCEEEEEC
Confidence            345566789999999988753

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=90.99  E-value=1  Score=37.34  Aligned_cols=91  Identities=12%  Similarity=-0.004  Sum_probs=50.4

Q ss_pred             CCCCeEEEE--ccccHHHHHHhccC-CcEEEEeCCHHHH-HhcccccCCCCCeEEEE-ccCCCCCCCCCCccEEEEcCCC
Q psy8015          25 SKRLDCLAL--TSNTKQSTTLPTFI-PNSFNINVYYYLS-GGPLSSTIDPDHDYDLI-ADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        25 ~~~~~vLei--~GsG~~t~~la~~~-~~V~aiD~~~~~~-~~A~~~~~~~~nV~~~~-gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      .++++||=.  .+.|..+..+|+.. .+|++++.+++-. +.+  +++|.+.+  +. .+........+.+|+++-....
T Consensus       182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~--~~~Ga~~v--i~~~~~~~~~~~~~~~D~vid~~g~  257 (360)
T PLN02586        182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAI--NRLGADSF--LVSTDPEKMKAAIGTMDYIIDTVSA  257 (360)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHH--HhCCCcEE--EcCCCHHHHHhhcCCCCEEEECCCC
Confidence            578898877  34455666666654 4788888776433 222  23454221  11 1100000001258988754443


Q ss_pred             CCchHHHHhccccCcEEEEE
Q psy8015         100 PRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus       100 ~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ...-+...+.|++||+++..
T Consensus       258 ~~~~~~~~~~l~~~G~iv~v  277 (360)
T PLN02586        258 VHALGPLLGLLKVNGKLITL  277 (360)
T ss_pred             HHHHHHHHHHhcCCcEEEEe
Confidence            33334567999999998864

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=90.86  E-value=0.58  Score=39.21  Aligned_cols=91  Identities=13%  Similarity=-0.019  Sum_probs=52.0

Q ss_pred             CCCCeEEEE--ccccHHHHHHhccCC-cEEEEeCCHHH-HHhcccccCCCCCeEEEEc-cCCCCCCCCCCccEEEEcCCC
Q psy8015          25 SKRLDCLAL--TSNTKQSTTLPTFIP-NSFNINVYYYL-SGGPLSSTIDPDHDYDLIA-DGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        25 ~~~~~vLei--~GsG~~t~~la~~~~-~V~aiD~~~~~-~~~A~~~~~~~~nV~~~~g-D~~~~~~~~~~fD~I~i~~~~   99 (165)
                      +++++||=.  .+.|..+..+|+..+ +|++++.+++. .+.+  +++|.+.+  +.. +........+.+|+++-..+.
T Consensus       177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a--~~lGa~~~--i~~~~~~~v~~~~~~~D~vid~~G~  252 (375)
T PLN02178        177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAI--DRLGADSF--LVTTDSQKMKEAVGTMDFIIDTVSA  252 (375)
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHH--HhCCCcEE--EcCcCHHHHHHhhCCCcEEEECCCc
Confidence            478888766  334555566666544 79999877543 4444  34454321  111 100000001258988765544


Q ss_pred             CCchHHHHhccccCcEEEEE
Q psy8015         100 PRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus       100 ~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +...+...+.|++||+++..
T Consensus       253 ~~~~~~~~~~l~~~G~iv~v  272 (375)
T PLN02178        253 EHALLPLFSLLKVSGKLVAL  272 (375)
T ss_pred             HHHHHHHHHhhcCCCEEEEE
Confidence            44455667999999999874

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=90.77  E-value=2.5  Score=33.97  Aligned_cols=86  Identities=14%  Similarity=0.079  Sum_probs=51.8

Q ss_pred             CCCCCeEEEEccccHH---HHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          24 HSKRLDCLALTSNTKQ---STTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        24 ~~~~~~vLei~GsG~~---t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      ..++++||=. |+|.+   ++.+++.. .+|++++.+++..+.++  .+|.+.  ++..+.   . ....+|.++.....
T Consensus       165 ~~~~~~vlV~-g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~--~~g~~~--~~~~~~---~-~~~~vD~vi~~~~~  235 (329)
T cd08298         165 LKPGQRLGLY-GFGASAHLALQIARYQGAEVFAFTRSGEHQELAR--ELGADW--AGDSDD---L-PPEPLDAAIIFAPV  235 (329)
T ss_pred             CCCCCEEEEE-CCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHH--HhCCcE--EeccCc---c-CCCcccEEEEcCCc
Confidence            4678888766 34444   34444433 48999998887776663  344321  111111   1 12358988765333


Q ss_pred             CCchHHHHhccccCcEEEE
Q psy8015         100 PRYPEIFIHHLKSGGRLVI  118 (165)
Q Consensus       100 ~~~p~~l~~~LkpgG~lvi  118 (165)
                      ....+..++.|+++|+++.
T Consensus       236 ~~~~~~~~~~l~~~G~~v~  254 (329)
T cd08298         236 GALVPAALRAVKKGGRVVL  254 (329)
T ss_pred             HHHHHHHHHHhhcCCEEEE
Confidence            4455667899999999985

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=90.69  E-value=0.49  Score=38.39  Aligned_cols=94  Identities=5%  Similarity=-0.057  Sum_probs=56.2

Q ss_pred             CCCCCeEEEE-cc-ccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCe-EEEEccCCC---CCCCCCCccEEEE
Q psy8015          24 HSKRLDCLAL-TS-NTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRA---SFGDNGPYDAIHV   95 (165)
Q Consensus        24 ~~~~~~vLei-~G-sG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~---~~~~~~~fD~I~i   95 (165)
                      ..++++||-. +| .|..+..+|+..+  +|++++.+++..+.++  ++|.+.+ .....+..+   .......+|+++-
T Consensus       165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~--~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld  242 (347)
T cd05278         165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAK--EAGATDIINPKNGDIVEQILELTGGRGVDCVIE  242 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH--HhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEE
Confidence            3678899887 53 4677777777655  6889988887777654  2232211 111111100   1112246998875


Q ss_pred             cCCCCCchHHHHhccccCcEEEEE
Q psy8015          96 GAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        96 ~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ...........++.|+++|+++..
T Consensus       243 ~~g~~~~~~~~~~~l~~~G~~v~~  266 (347)
T cd05278         243 AVGFEETFEQAVKVVRPGGTIANV  266 (347)
T ss_pred             ccCCHHHHHHHHHHhhcCCEEEEE
Confidence            443333555667999999998754

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=90.60  E-value=1.8  Score=30.81  Aligned_cols=86  Identities=13%  Similarity=-0.024  Sum_probs=54.1

Q ss_pred             CCeEEEEccccHHHHH---HhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC-CCCCccEEEEcCCCCCc
Q psy8015          27 RLDCLALTSNTKQSTT---LPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG-DNGPYDAIHVGAAYPRY  102 (165)
Q Consensus        27 ~~~vLei~GsG~~t~~---la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~-~~~~fD~I~i~~~~~~~  102 (165)
                      ..+|.|+ |.|+++..   |++.+-.|+++|+++.   .|     . +.+.++..|.++.-- -....|+|+.--..+++
T Consensus        14 ~gkVvEV-GiG~~~~VA~~L~e~g~dv~atDI~~~---~a-----~-~g~~~v~DDitnP~~~iY~~A~lIYSiRpppEl   83 (129)
T COG1255          14 RGKVVEV-GIGFFLDVAKRLAERGFDVLATDINEK---TA-----P-EGLRFVVDDITNPNISIYEGADLIYSIRPPPEL   83 (129)
T ss_pred             CCcEEEE-ccchHHHHHHHHHHcCCcEEEEecccc---cC-----c-ccceEEEccCCCccHHHhhCccceeecCCCHHH
Confidence            3499999 88876654   4444457999999987   22     1 457889999876321 13457999887777766


Q ss_pred             hHHHHhccc-cCcEEEE-EecC
Q psy8015         103 PEIFIHHLK-SGGRLVI-PIGD  122 (165)
Q Consensus       103 p~~l~~~Lk-pgG~lvi-~~~~  122 (165)
                      ...+.+.-+ -|-.+++ |...
T Consensus        84 ~~~ildva~aVga~l~I~pL~G  105 (129)
T COG1255          84 QSAILDVAKAVGAPLYIKPLTG  105 (129)
T ss_pred             HHHHHHHHHhhCCCEEEEecCC
Confidence            654443322 2344444 4443

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=90.33  E-value=0.68  Score=37.20  Aligned_cols=93  Identities=5%  Similarity=-0.052  Sum_probs=54.4

Q ss_pred             cCCCCCeEEEEc---cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEE-ccCCC---CCCCCCCccEEE
Q psy8015          23 GHSKRLDCLALT---SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLI-ADGRA---SFGDNGPYDAIH   94 (165)
Q Consensus        23 ~~~~~~~vLei~---GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~-gD~~~---~~~~~~~fD~I~   94 (165)
                      ...++++||=.-   |.|..+..+|+.. .+|++++.+++-.+.++  ++|.+.+--.. .|..+   .... ..+|+|+
T Consensus       140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~--~~Ga~~vi~~~~~~~~~~v~~~~~-~gvd~vl  216 (329)
T cd08294         140 KPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLK--ELGFDAVFNYKTVSLEEALKEAAP-DGIDCYF  216 (329)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--HcCCCEEEeCCCccHHHHHHHHCC-CCcEEEE
Confidence            346788887553   3445555566654 47999999888777664  34553221111 11100   1112 4589887


Q ss_pred             EcCCCCCchHHHHhccccCcEEEEE
Q psy8015          95 VGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        95 i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      -..+. ...+..++.|+++|+++..
T Consensus       217 d~~g~-~~~~~~~~~l~~~G~iv~~  240 (329)
T cd08294         217 DNVGG-EFSSTVLSHMNDFGRVAVC  240 (329)
T ss_pred             ECCCH-HHHHHHHHhhccCCEEEEE
Confidence            54333 4446678999999998764

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=90.11  E-value=0.89  Score=36.38  Aligned_cols=50  Identities=6%  Similarity=-0.065  Sum_probs=42.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL   64 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~   64 (165)
                      ...+++... . .+++.|||. +|+|......-++..+.+++|++++..+.+.
T Consensus       211 l~~r~i~~~-s-~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~  261 (302)
T COG0863         211 LIERLIRDY-S-FPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVAL  261 (302)
T ss_pred             HHHHHHHhc-C-CCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHH
Confidence            345556552 2 689999999 9999999888888899999999999999984

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=89.86  E-value=1.4  Score=35.84  Aligned_cols=94  Identities=9%  Similarity=0.007  Sum_probs=54.5

Q ss_pred             CCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCC-eEEEEccCC---CCCCCCCCccEEEE
Q psy8015          24 HSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDH-DYDLIADGR---ASFGDNGPYDAIHV   95 (165)
Q Consensus        24 ~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~n-V~~~~gD~~---~~~~~~~~fD~I~i   95 (165)
                      ..++++||=.  .+.|..+..+|+..+  +|++++.+++..+.++  .+|.+. +.....+..   ..+.....+|.++-
T Consensus       164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~--~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld  241 (345)
T cd08286         164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAK--KLGATHTVNSAKGDAIEQVLELTDGRGVDVVIE  241 (345)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH--HhCCCceeccccccHHHHHHHHhCCCCCCEEEE
Confidence            3578887766  444555566666554  7899999887776654  345432 121111110   01122346998875


Q ss_pred             cCCCCCchHHHHhccccCcEEEEE
Q psy8015          96 GAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        96 ~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      .......-+.+.+.|+++|+++..
T Consensus       242 ~~g~~~~~~~~~~~l~~~g~~v~~  265 (345)
T cd08286         242 AVGIPATFELCQELVAPGGHIANV  265 (345)
T ss_pred             CCCCHHHHHHHHHhccCCcEEEEe
Confidence            433223345667999999998753

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=89.78  E-value=1.2  Score=38.20  Aligned_cols=84  Identities=5%  Similarity=-0.132  Sum_probs=52.6

Q ss_pred             CCCCeEEEEccccHHHHHHh---cc-CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015          25 SKRLDCLALTSNTKQSTTLP---TF-IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP  100 (165)
Q Consensus        25 ~~~~~vLei~GsG~~t~~la---~~-~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~  100 (165)
                      -+|++|+=+ |.|..+...+   +. ..+|+.+|.++...+.|+.  .|..   ...-+  +..   ..+|+|+.....+
T Consensus       200 l~GktVvVi-G~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~--~G~~---~~~~~--e~v---~~aDVVI~atG~~  268 (413)
T cd00401         200 IAGKVAVVA-GYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM--EGYE---VMTME--EAV---KEGDIFVTTTGNK  268 (413)
T ss_pred             CCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh--cCCE---EccHH--HHH---cCCCEEEECCCCH
Confidence            478999776 5555554433   33 3489999999988887752  3432   11111  111   2479888765555


Q ss_pred             Cc-hHHHHhccccCcEEEEE
Q psy8015         101 RY-PEIFIHHLKSGGRLVIP  119 (165)
Q Consensus       101 ~~-p~~l~~~LkpgG~lvi~  119 (165)
                      .. ....++.+|+||+++..
T Consensus       269 ~~i~~~~l~~mk~Ggilvnv  288 (413)
T cd00401         269 DIITGEHFEQMKDGAIVCNI  288 (413)
T ss_pred             HHHHHHHHhcCCCCcEEEEe
Confidence            44 44568999999988653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=89.77  E-value=2.5  Score=34.39  Aligned_cols=94  Identities=7%  Similarity=-0.053  Sum_probs=55.0

Q ss_pred             cCCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEE-EEc-cCC---CCCCCCCCccEE
Q psy8015          23 GHSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYD-LIA-DGR---ASFGDNGPYDAI   93 (165)
Q Consensus        23 ~~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~-~~g-D~~---~~~~~~~~fD~I   93 (165)
                      ..++|++||=. +  |.|..+..+|+.. .+|++++.+++-.+.++. .+|.+.+-- ... |..   ..... ..+|++
T Consensus       148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~-~lGa~~vi~~~~~~~~~~~i~~~~~-~gvd~v  225 (338)
T cd08295         148 KPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKN-KLGFDDAFNYKEEPDLDAALKRYFP-NGIDIY  225 (338)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-hcCCceeEEcCCcccHHHHHHHhCC-CCcEEE
Confidence            34788999855 3  3445555556554 479999988887766531 145543211 111 110   11111 468988


Q ss_pred             EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +-.... ...+..++.|+++|+++..
T Consensus       226 ~d~~g~-~~~~~~~~~l~~~G~iv~~  250 (338)
T cd08295         226 FDNVGG-KMLDAVLLNMNLHGRIAAC  250 (338)
T ss_pred             EECCCH-HHHHHHHHHhccCcEEEEe
Confidence            754433 3445678999999998864

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=89.57  E-value=0.65  Score=39.43  Aligned_cols=49  Identities=8%  Similarity=-0.143  Sum_probs=35.1

Q ss_pred             HHHHhcCCCCCeEEEEccccHHHHHHhc-cCCcEEEEeCCHHHHHhccccc
Q psy8015          18 VTYLSGHSKRLDCLALTSNTKQSTTLPT-FIPNSFNINVYYYLSGGPLSST   67 (165)
Q Consensus        18 l~~l~~~~~~~~vLei~GsG~~t~~la~-~~~~V~aiD~~~~~~~~A~~~~   67 (165)
                      .+.| .+.|+++||=||++|-.+..+.. --++|+|||.||.-....+++.
T Consensus        28 ~~aL-~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl   77 (380)
T PF11899_consen   28 MEAL-NIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKL   77 (380)
T ss_pred             HHHh-CCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence            4555 46899999999666665554433 3479999999998877665443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=89.44  E-value=0.45  Score=37.33  Aligned_cols=53  Identities=6%  Similarity=-0.170  Sum_probs=37.0

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL   64 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~   64 (165)
                      ......+++.+.. .+..++.|. +|+|.++..+.....+|+.=|+++.++...+
T Consensus         6 ~~l~~~I~~~ip~-~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~   59 (260)
T PF02086_consen    6 RKLAKWIIELIPK-NKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWK   59 (260)
T ss_dssp             GGGHHHHHHHS-S--S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHH
T ss_pred             HHHHHHHHHHcCC-CCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHH
Confidence            3455666676642 178999999 9999999988777889999999998888765

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=89.43  E-value=1.8  Score=35.39  Aligned_cols=94  Identities=12%  Similarity=-0.102  Sum_probs=55.2

Q ss_pred             CCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCe-EEEEccCCC---CCCCCCCccEEEE
Q psy8015          24 HSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRA---SFGDNGPYDAIHV   95 (165)
Q Consensus        24 ~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~---~~~~~~~fD~I~i   95 (165)
                      ..++++||=.  .+.|..+..+|+..+  +|++++.+++-.+.++  ++|.+.+ .....+..+   .......+|.++-
T Consensus       170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~--~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid  247 (351)
T cd08233         170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAE--ELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFD  247 (351)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH--HhCCCEEECCCccCHHHHHHHHhCCCCCCEEEE
Confidence            4678888777  344555555666543  7999999988887764  2344211 111111100   0112235998876


Q ss_pred             cCCCCCchHHHHhccccCcEEEEE
Q psy8015          96 GAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        96 ~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ........+..++.|+++|+++..
T Consensus       248 ~~g~~~~~~~~~~~l~~~G~~v~~  271 (351)
T cd08233         248 CAGVQATLDTAIDALRPRGTAVNV  271 (351)
T ss_pred             CCCCHHHHHHHHHhccCCCEEEEE
Confidence            554433445667899999998764

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=89.38  E-value=0.51  Score=41.30  Aligned_cols=88  Identities=16%  Similarity=0.159  Sum_probs=51.5

Q ss_pred             CCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC-CCCccEEEEcCCCCCc
Q psy8015          27 RLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD-NGPYDAIHVGAAYPRY  102 (165)
Q Consensus        27 ~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~-~~~fD~I~i~~~~~~~  102 (165)
                      =..|+|. +|.|.+|+.|...  .|.-...-+..-...-  .-..|+-.   +..|-.+.++. ..+||.|+.++.+..+
T Consensus       366 iRNVMDMnAg~GGFAAAL~~~--~VWVMNVVP~~~~ntL~vIydRGLIG---~yhDWCE~fsTYPRTYDLlHA~~lfs~~  440 (506)
T PF03141_consen  366 IRNVMDMNAGYGGFAAALIDD--PVWVMNVVPVSGPNTLPVIYDRGLIG---VYHDWCEAFSTYPRTYDLLHADGLFSLY  440 (506)
T ss_pred             eeeeeeecccccHHHHHhccC--CceEEEecccCCCCcchhhhhcccch---hccchhhccCCCCcchhheehhhhhhhh
Confidence            4679999 9999999999753  3444444443111000  11112211   12233333322 3689999998776543


Q ss_pred             h---------HHHHhccccCcEEEEE
Q psy8015         103 P---------EIFIHHLKSGGRLVIP  119 (165)
Q Consensus       103 p---------~~l~~~LkpgG~lvi~  119 (165)
                      .         -++=+.|+|+|.+++=
T Consensus       441 ~~rC~~~~illEmDRILRP~G~~iiR  466 (506)
T PF03141_consen  441 KDRCEMEDILLEMDRILRPGGWVIIR  466 (506)
T ss_pred             cccccHHHHHHHhHhhcCCCceEEEe
Confidence            2         2456899999998873

; GO: 0008168 methyltransferase activity

>KOG2078|consensus

Probab=89.32  E-value=0.26  Score=42.39  Aligned_cols=70  Identities=6%  Similarity=-0.135  Sum_probs=55.3

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc----cccCCCCCeEEEEccCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL----SSTIDPDHDYDLIADGRA   82 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~----~~~~~~~nV~~~~gD~~~   82 (165)
                      .+....|+-..   .++|+.|-|+ ||.|=+++.++.-..+|++-|.++++++.-+    +....-.+++.+..||..
T Consensus       236 L~~Eherlsg~---fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~  310 (495)
T KOG2078|consen  236 LSHEHERLSGL---FKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD  310 (495)
T ss_pred             chhHHHHHhhc---cCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence            34456666663   2789999999 9999999999988899999999999999874    334444568888888754

>cd05281 TDH Threonine dehydrogenase

Probab=89.31  E-value=1.4  Score=35.89  Aligned_cols=93  Identities=15%  Similarity=0.020  Sum_probs=55.2

Q ss_pred             CCCCeEEEE-c-cccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCe-EEEEccCC--CCCCCCCCccEEEEcC
Q psy8015          25 SKRLDCLAL-T-SNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGR--ASFGDNGPYDAIHVGA   97 (165)
Q Consensus        25 ~~~~~vLei-~-GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~--~~~~~~~~fD~I~i~~   97 (165)
                      .++++||=. + +.|..++.+++..+  +|++++.+++-.+.++  ++|.+.+ .....+..  ......+.+|.++-..
T Consensus       162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~  239 (341)
T cd05281         162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAK--KMGADVVINPREEDVVEVKSVTDGTGVDVVLEMS  239 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH--HhCcceeeCcccccHHHHHHHcCCCCCCEEEECC
Confidence            578888776 4 34677777777654  6888887776666554  2343221 11111110  0112234699888654


Q ss_pred             CCCCchHHHHhccccCcEEEEE
Q psy8015          98 AYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        98 ~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ..........+.|+++|+++..
T Consensus       240 g~~~~~~~~~~~l~~~G~~v~~  261 (341)
T cd05281         240 GNPKAIEQGLKALTPGGRVSIL  261 (341)
T ss_pred             CCHHHHHHHHHHhccCCEEEEE
Confidence            4444456678999999998764

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=89.29  E-value=2.2  Score=34.60  Aligned_cols=93  Identities=10%  Similarity=0.098  Sum_probs=56.5

Q ss_pred             cCCCCCeEEEE-ccc-cHHHHHHhccCC-c-EEEEeCCHHHHHhcccccCCCCCeEEEEccC--C---CCCCCCCCccEE
Q psy8015          23 GHSKRLDCLAL-TSN-TKQSTTLPTFIP-N-SFNINVYYYLSGGPLSSTIDPDHDYDLIADG--R---ASFGDNGPYDAI   93 (165)
Q Consensus        23 ~~~~~~~vLei-~Gs-G~~t~~la~~~~-~-V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~--~---~~~~~~~~fD~I   93 (165)
                      ...++++||-. +|+ |..+..+|+..+ + |+.++.+++..+.++  ..+..+  ++..+.  .   ........+|.+
T Consensus       156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~--~~g~~~--~~~~~~~~~~~~~~~~~~~~~d~v  231 (343)
T cd08236         156 GITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAR--ELGADD--TINPKEEDVEKVRELTEGRGADLV  231 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH--HcCCCE--EecCccccHHHHHHHhCCCCCCEE
Confidence            34688899988 543 667666776553 4 999998887777553  234322  111110  0   011222359988


Q ss_pred             EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +-...........++.|+++|+++..
T Consensus       232 ld~~g~~~~~~~~~~~l~~~G~~v~~  257 (343)
T cd08236         232 IEAAGSPATIEQALALARPGGKVVLV  257 (343)
T ss_pred             EECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            86543334456678999999997764

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=88.50  E-value=1.6  Score=39.09  Aligned_cols=85  Identities=5%  Similarity=-0.105  Sum_probs=60.1

Q ss_pred             ccccHHHHHHhccC----CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--C--CCCCCccEEEEcCCCCCchH-
Q psy8015          34 TSNTKQSTTLPTFI----PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--F--GDNGPYDAIHVGAAYPRYPE-  104 (165)
Q Consensus        34 ~GsG~~t~~la~~~----~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~--~~~~~fD~I~i~~~~~~~p~-  104 (165)
                      ||.|-++..+++..    .+++.+|.|++.++.++.  .   +..++.||+.+.  +  ..-++.|.+++....++.-. 
T Consensus       406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--~---g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~  480 (601)
T PRK03659        406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK--Y---GYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMK  480 (601)
T ss_pred             ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--C---CCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHHH
Confidence            89999998888752    589999999999997752  2   357899998752  1  12357898888655543221 


Q ss_pred             --HHHhccccCcEEEEEecCC
Q psy8015         105 --IFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus       105 --~l~~~LkpgG~lvi~~~~~  123 (165)
                        ...+.+.|.-++++-..++
T Consensus       481 i~~~~r~~~p~~~IiaRa~~~  501 (601)
T PRK03659        481 IVELCQQHFPHLHILARARGR  501 (601)
T ss_pred             HHHHHHHHCCCCeEEEEeCCH
Confidence              3456778888888766543

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=88.42  E-value=2.7  Score=33.92  Aligned_cols=95  Identities=11%  Similarity=0.015  Sum_probs=58.4

Q ss_pred             cCCCCCeEEEE-c-cccHHHHHHhcc--CCcEEEEeCCHHHHHhcccccCCCCCeEEEEc-cC-CCCC-CCCCCccEEEE
Q psy8015          23 GHSKRLDCLAL-T-SNTKQSTTLPTF--IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIA-DG-RASF-GDNGPYDAIHV   95 (165)
Q Consensus        23 ~~~~~~~vLei-~-GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g-D~-~~~~-~~~~~fD~I~i   95 (165)
                      ...++++||=. + +.|..+..+|+.  ..+|++++.+++-.+.++  ++|.+.+--... +. .+.+ ...+.+|.++.
T Consensus       159 ~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~--~~g~~~v~~~~~~~~~~~~v~~~~~~~d~vi~  236 (338)
T PRK09422        159 GIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAK--EVGADLTINSKRVEDVAKIIQEKTGGAHAAVV  236 (338)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHH--HcCCcEEecccccccHHHHHHHhcCCCcEEEE
Confidence            34678888777 3 456777777774  568999999999888774  345432211111 11 0000 01124786666


Q ss_pred             cCCCCCchHHHHhccccCcEEEEE
Q psy8015          96 GAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        96 ~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +.......+..++.|+++|+++..
T Consensus       237 ~~~~~~~~~~~~~~l~~~G~~v~~  260 (338)
T PRK09422        237 TAVAKAAFNQAVDAVRAGGRVVAV  260 (338)
T ss_pred             eCCCHHHHHHHHHhccCCCEEEEE
Confidence            654445556778999999998874

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=88.35  E-value=1.6  Score=36.15  Aligned_cols=93  Identities=9%  Similarity=-0.094  Sum_probs=56.5

Q ss_pred             CCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCe-EEEEc--cCCC---CCCCCCCccEE
Q psy8015          24 HSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHD-YDLIA--DGRA---SFGDNGPYDAI   93 (165)
Q Consensus        24 ~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~g--D~~~---~~~~~~~fD~I   93 (165)
                      .+++++||=.  .+.|..+..+|+..+  +|+++|.+++-.+.++  .+|.+.+ .....  |..+   .+.. +.+|+|
T Consensus       184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~--~lGa~~~i~~~~~~~~~~~~v~~~~~-~g~d~v  260 (368)
T cd08300         184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAK--KFGATDCVNPKDHDKPIQQVLVEMTD-GGVDYT  260 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH--HcCCCEEEcccccchHHHHHHHHHhC-CCCcEE
Confidence            4689999888  344555666666543  6999999999888774  3454321 11111  0100   0111 369988


Q ss_pred             EEcCCCCCchHHHHhccccC-cEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLKSG-GRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~Lkpg-G~lvi~  119 (165)
                      +-....+...+...+.|+++ |+++..
T Consensus       261 id~~g~~~~~~~a~~~l~~~~G~~v~~  287 (368)
T cd08300         261 FECIGNVKVMRAALEACHKGWGTSVII  287 (368)
T ss_pred             EECCCChHHHHHHHHhhccCCCeEEEE
Confidence            76544333445567899997 998874

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=88.11  E-value=2.9  Score=33.99  Aligned_cols=93  Identities=11%  Similarity=0.003  Sum_probs=54.8

Q ss_pred             CCCCeEEEE-c-cccHHHHHHhccCC-c-EEEEeCCHHHHHhcccccCCCCCe-EEEEccCCC---CCCCCCCccEEEEc
Q psy8015          25 SKRLDCLAL-T-SNTKQSTTLPTFIP-N-SFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRA---SFGDNGPYDAIHVG   96 (165)
Q Consensus        25 ~~~~~vLei-~-GsG~~t~~la~~~~-~-V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~---~~~~~~~fD~I~i~   96 (165)
                      .+++++|=. + +.|+.++.+|+..+ + |++++.+++-.+.++  .+|.+.+ .....+..+   .......||.++-.
T Consensus       160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~--~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~  237 (340)
T TIGR00692       160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAK--KMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEM  237 (340)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH--HhCCcEEEcccccCHHHHHHHhcCCCCCCEEEEC
Confidence            578888766 3 34566666676554 4 888888887776653  2343221 111111111   11223469988775


Q ss_pred             CCCCCchHHHHhccccCcEEEEE
Q psy8015          97 AAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        97 ~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      .......+...+.|+++|+++..
T Consensus       238 ~g~~~~~~~~~~~l~~~g~~v~~  260 (340)
T TIGR00692       238 SGAPKALEQGLQAVTPGGRVSLL  260 (340)
T ss_pred             CCCHHHHHHHHHhhcCCCEEEEE
Confidence            34334456678999999998764

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=88.10  E-value=2.3  Score=37.65  Aligned_cols=85  Identities=4%  Similarity=-0.180  Sum_probs=58.3

Q ss_pred             E-ccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--C--CCCCCccEEEEcCCCCCc-
Q psy8015          33 L-TSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--F--GDNGPYDAIHVGAAYPRY-  102 (165)
Q Consensus        33 i-~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~--~~~~~fD~I~i~~~~~~~-  102 (165)
                      + ||.|-++..+++.    ..+|+.+|.|++.++.++.     .+...+.||+.+.  +  ..-++.|.+++.-..+.- 
T Consensus       421 iI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-----~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~  495 (558)
T PRK10669        421 LLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-----RGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEA  495 (558)
T ss_pred             EEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----CCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHH
Confidence            6 9999999888875    3579999999999887752     2578899998752  1  223578988775433211 


Q ss_pred             --hHHHHhccccCcEEEEEecC
Q psy8015         103 --PEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus       103 --p~~l~~~LkpgG~lvi~~~~  122 (165)
                        --...+.+.|.-++++-+.+
T Consensus       496 ~~iv~~~~~~~~~~~iiar~~~  517 (558)
T PRK10669        496 GEIVASAREKRPDIEIIARAHY  517 (558)
T ss_pred             HHHHHHHHHHCCCCeEEEEECC
Confidence              11234666777777776543

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=88.09  E-value=3.2  Score=36.35  Aligned_cols=73  Identities=4%  Similarity=-0.079  Sum_probs=46.1

Q ss_pred             CCCCeEEEE-ccccHHHHHHhcc------CCcEEEEeCCHHHHHhcc--cccCCC--CCeEEEEccCCCCC--CCCCCcc
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTF------IPNSFNINVYYYLSGGPL--SSTIDP--DHDYDLIADGRASF--GDNGPYD   91 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~------~~~V~aiD~~~~~~~~A~--~~~~~~--~nV~~~~gD~~~~~--~~~~~fD   91 (165)
                      .|+..+.|. ||||.+-....+.      ...+++-|.++.+...|+  ..-.+.  ++.....+|.....  ....+||
T Consensus       216 dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D  295 (501)
T TIGR00497       216 DTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFE  295 (501)
T ss_pred             CCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCC
Confidence            367899999 9999876543321      135899999999999886  211222  23344455654321  1235689


Q ss_pred             EEEEcC
Q psy8015          92 AIHVGA   97 (165)
Q Consensus        92 ~I~i~~   97 (165)
                      .|+.+.
T Consensus       296 ~v~~Np  301 (501)
T TIGR00497       296 VVVSNP  301 (501)
T ss_pred             EEeecC
Confidence            888765

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=87.96  E-value=2.2  Score=34.49  Aligned_cols=93  Identities=12%  Similarity=0.029  Sum_probs=55.2

Q ss_pred             CCCCeEEEE--ccccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccC---CCCCCCCCCccEEEEcC
Q psy8015          25 SKRLDCLAL--TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADG---RASFGDNGPYDAIHVGA   97 (165)
Q Consensus        25 ~~~~~vLei--~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~---~~~~~~~~~fD~I~i~~   97 (165)
                      .++++||=.  .+.|..++.+|+..  .+|++++.+++-.+.++  ++|.+.+--...+.   ...+.....+|.++-..
T Consensus       166 ~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvld~~  243 (340)
T cd05284         166 DPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAE--RLGADHVLNASDDVVEEVRELTGGRGADAVIDFV  243 (340)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHH--HhCCcEEEcCCccHHHHHHHHhCCCCCCEEEEcC
Confidence            567888777  44566666666654  48999998887766553  34442211111110   00112224699888654


Q ss_pred             CCCCchHHHHhccccCcEEEEE
Q psy8015          98 AYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        98 ~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ..+...+..++.|+++|+++..
T Consensus       244 g~~~~~~~~~~~l~~~g~~i~~  265 (340)
T cd05284         244 GSDETLALAAKLLAKGGRYVIV  265 (340)
T ss_pred             CCHHHHHHHHHHhhcCCEEEEE
Confidence            4334455667999999998864

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=87.77  E-value=3.1  Score=33.53  Aligned_cols=90  Identities=7%  Similarity=-0.056  Sum_probs=69.5

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC----CC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA----SF   84 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~----~~   84 (165)
                      .+...+.++..+....++.+ |.- +||-.++..+.+--.++...|+.|+=...-+..-.+-.||.+..+|++.    .+
T Consensus        73 lpa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~d~~vrv~~~DG~~~l~a~L  151 (279)
T COG2961          73 LPAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAGDRRVRVLRGDGFLALKAHL  151 (279)
T ss_pred             chHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCCCcceEEEecCcHHHHhhhC
Confidence            56677788888877677776 899 9999999999988899999999998777665222255689999999874    34


Q ss_pred             CCCCCccEEEEcCCCC
Q psy8015          85 GDNGPYDAIHVGAAYP  100 (165)
Q Consensus        85 ~~~~~fD~I~i~~~~~  100 (165)
                      |+.+.=-.|+++..++
T Consensus       152 PP~erRglVLIDPPfE  167 (279)
T COG2961         152 PPKERRGLVLIDPPFE  167 (279)
T ss_pred             CCCCcceEEEeCCCcc
Confidence            4445557899988776

>KOG2352|consensus

Probab=87.58  E-value=1.3  Score=38.57  Aligned_cols=98  Identities=14%  Similarity=0.040  Sum_probs=62.9

Q ss_pred             CCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCC-------CCCCCCCccEE
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRA-------SFGDNGPYDAI   93 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~-------~~~~~~~fD~I   93 (165)
                      -+...|=+ -|+|.+...+-.-.  -+++++|++|.|++.|+  +.........+...|+..       .-++...||++
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl  374 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL  374 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence            35567777 78888877664433  47999999999999996  221111233445555531       11245789999


Q ss_pred             EEcCCCCC------ch---------HHHHhccccCcEEEEEecCC
Q psy8015          94 HVGAAYPR------YP---------EIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        94 ~i~~~~~~------~p---------~~l~~~LkpgG~lvi~~~~~  123 (165)
                      +++-.-..      .|         ......|.|-|.+.+..-..
T Consensus       375 ~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r  419 (482)
T KOG2352|consen  375 MVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR  419 (482)
T ss_pred             EEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC
Confidence            99744322      11         13568899999998876544

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=86.90  E-value=1.1  Score=36.99  Aligned_cols=66  Identities=11%  Similarity=-0.071  Sum_probs=43.9

Q ss_pred             EEEE-ccccHHHHHHhccCC-cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC-CCCCccEEEEcCCC
Q psy8015          30 CLAL-TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG-DNGPYDAIHVGAAY   99 (165)
Q Consensus        30 vLei-~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~-~~~~fD~I~i~~~~   99 (165)
                      |+|+ ||.|.++.-|-+.+- -|.++|+++...+.-+..   .++ .++.+|..+..+ +...+|+++.+..+
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N---~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PC   69 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEAN---FGN-KVPFGDITKISPSDIPDFDILLGGFPC   69 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHh---CCC-CCCccChhhhhhhhCCCcCEEEecCCC
Confidence            6899 999999988876654 467899999998876421   122 344567654321 23458988776443

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK10458 DNA cytosine methylase; Provisional

Probab=86.89  E-value=5.3  Score=34.92  Aligned_cols=38  Identities=5%  Similarity=-0.139  Sum_probs=30.7

Q ss_pred             CCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc
Q psy8015          27 RLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL   64 (165)
Q Consensus        27 ~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~   64 (165)
                      .-+++|+ ||.|-++.-+-... ..|.++|+++.+.+.=+
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~  127 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYK  127 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHH
Confidence            4599999 99999998876655 46789999998887543

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=86.62  E-value=3.1  Score=34.43  Aligned_cols=91  Identities=9%  Similarity=0.007  Sum_probs=56.7

Q ss_pred             CCCCCeEEEE-c-cccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCC---C---CCCCCCCccEE
Q psy8015          24 HSKRLDCLAL-T-SNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR---A---SFGDNGPYDAI   93 (165)
Q Consensus        24 ~~~~~~vLei-~-GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~---~---~~~~~~~fD~I   93 (165)
                      ..++++||=. + +.|..+..+|+..+  +|+++|.+++..+.++  .+|.+  .++..+-.   +   ... ...+|.+
T Consensus       184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~--~~g~~--~~i~~~~~~~~~~v~~~~-~~~~d~v  258 (365)
T cd08278         184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAK--ELGAT--HVINPKEEDLVAAIREIT-GGGVDYA  258 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH--HcCCc--EEecCCCcCHHHHHHHHh-CCCCcEE
Confidence            4678899888 4 33666666666543  5999999998887664  23432  11211110   0   011 2469988


Q ss_pred             EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +-....+...+...+.|+++|+++..
T Consensus       259 ld~~g~~~~~~~~~~~l~~~G~~v~~  284 (365)
T cd08278         259 LDTTGVPAVIEQAVDALAPRGTLALV  284 (365)
T ss_pred             EECCCCcHHHHHHHHHhccCCEEEEe
Confidence            76544444556678999999998874

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=86.50  E-value=3.6  Score=33.92  Aligned_cols=92  Identities=11%  Similarity=0.096  Sum_probs=54.8

Q ss_pred             CCCCeEEEE-c-cccHHHHHHhccCC-c-EEEEeCCHHHHHhcccccCCCCCeEEEEccCCC------CCCCCCCccEEE
Q psy8015          25 SKRLDCLAL-T-SNTKQSTTLPTFIP-N-SFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA------SFGDNGPYDAIH   94 (165)
Q Consensus        25 ~~~~~vLei-~-GsG~~t~~la~~~~-~-V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~------~~~~~~~fD~I~   94 (165)
                      .++++||=. + +.|..+..+|+..+ + |+.++.+++..+.++  .+|.+.  ++..+-..      .......||.|+
T Consensus       186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~--~~g~~~--v~~~~~~~~~~~l~~~~~~~~~d~vl  261 (367)
T cd08263         186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAK--ELGATH--TVNAAKEDAVAAIREITGGRGVDVVV  261 (367)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH--HhCCce--EecCCcccHHHHHHHHhCCCCCCEEE
Confidence            578888866 3 35555566665543 5 999998888777663  334322  11111100      111234699888


Q ss_pred             EcCCCCCchHHHHhccccCcEEEEEe
Q psy8015          95 VGAAYPRYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        95 i~~~~~~~p~~l~~~LkpgG~lvi~~  120 (165)
                      -........+..++.|+++|+++..-
T Consensus       262 d~vg~~~~~~~~~~~l~~~G~~v~~g  287 (367)
T cd08263         262 EALGKPETFKLALDVVRDGGRAVVVG  287 (367)
T ss_pred             EeCCCHHHHHHHHHHHhcCCEEEEEc
Confidence            64333324566789999999988764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=85.95  E-value=1.8  Score=31.11  Aligned_cols=88  Identities=13%  Similarity=0.027  Sum_probs=44.7

Q ss_pred             CCCeEEEEccccHHH---HHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC-CCCccEEEEcCCCCC
Q psy8015          26 KRLDCLALTSNTKQS---TTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD-NGPYDAIHVGAAYPR  101 (165)
Q Consensus        26 ~~~~vLei~GsG~~t---~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~-~~~fD~I~i~~~~~~  101 (165)
                      +..++.|| |.|...   ..|++..-.|+++|+++.   .|     . ..+.++..|..+.-.+ ....|+|+.-...++
T Consensus        13 ~~~kiVEV-GiG~~~~vA~~L~~~G~dV~~tDi~~~---~a-----~-~g~~~v~DDif~P~l~iY~~a~lIYSiRPP~E   82 (127)
T PF03686_consen   13 NYGKIVEV-GIGFNPEVAKKLKERGFDVIATDINPR---KA-----P-EGVNFVVDDIFNPNLEIYEGADLIYSIRPPPE   82 (127)
T ss_dssp             -SSEEEEE-T-TT--HHHHHHHHHS-EEEEE-SS-S-------------STTEE---SSS--HHHHTTEEEEEEES--TT
T ss_pred             CCCcEEEE-CcCCCHHHHHHHHHcCCcEEEEECccc---cc-----c-cCcceeeecccCCCHHHhcCCcEEEEeCCChH
Confidence            45699999 666544   444444568999999997   12     1 3577888998763221 246899999888888


Q ss_pred             chHHHHhcccc-CcEEEE-EecCC
Q psy8015         102 YPEIFIHHLKS-GGRLVI-PIGDT  123 (165)
Q Consensus       102 ~p~~l~~~Lkp-gG~lvi-~~~~~  123 (165)
                      +...+.+.-+. |.-+++ +.+.+
T Consensus        83 l~~~il~lA~~v~adlii~pL~~e  106 (127)
T PF03686_consen   83 LQPPILELAKKVGADLIIRPLGGE  106 (127)
T ss_dssp             SHHHHHHHHHHHT-EEEEE-BTTB
T ss_pred             HhHHHHHHHHHhCCCEEEECCCCC
Confidence            77655443333 333333 44443

; PDB: 2K4M_A.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=85.93  E-value=5.7  Score=35.13  Aligned_cols=93  Identities=11%  Similarity=0.009  Sum_probs=55.1

Q ss_pred             CCCeEEEE-ccc-cHHHHHHhcc-CCcEEEEeCCHHHHHhcccccCCCCCeEEEE---ccCCCC----------------
Q psy8015          26 KRLDCLAL-TSN-TKQSTTLPTF-IPNSFNINVYYYLSGGPLSSTIDPDHDYDLI---ADGRAS----------------   83 (165)
Q Consensus        26 ~~~~vLei-~Gs-G~~t~~la~~-~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~---gD~~~~----------------   83 (165)
                      ++.+|+=+ +|. |..++.+++. ..+|+.+|.+++..+.++  .+|.+.+++-.   ++...+                
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~--~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ--SMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--HcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            56899888 443 3444444444 357999999999888775  23433222211   110001                


Q ss_pred             CCC-CCCccEEEEcCCCC------CchHHHHhccccCcEEEEEe
Q psy8015          84 FGD-NGPYDAIHVGAAYP------RYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        84 ~~~-~~~fD~I~i~~~~~------~~p~~l~~~LkpgG~lvi~~  120 (165)
                      +++ ...+|+|+.+...+      -+.++..+.+|||+.++=..
T Consensus       241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA  284 (511)
T TIGR00561       241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLA  284 (511)
T ss_pred             HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEee
Confidence            111 24699997776222      24577889999999877433

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK10083 putative oxidoreductase; Provisional

Probab=85.37  E-value=4.2  Score=32.87  Aligned_cols=94  Identities=9%  Similarity=-0.097  Sum_probs=52.9

Q ss_pred             CCCCCeEEEE--ccccHHHHHHhc-c-C-CcEEEEeCCHHHHHhcccccCCCCCe-EEEEccCCCCCCC-CCCccEEEEc
Q psy8015          24 HSKRLDCLAL--TSNTKQSTTLPT-F-I-PNSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGRASFGD-NGPYDAIHVG   96 (165)
Q Consensus        24 ~~~~~~vLei--~GsG~~t~~la~-~-~-~~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~~~~~~-~~~fD~I~i~   96 (165)
                      ..++++||=.  .+.|..+..+|+ . . ..+++++.+++..+.++  ++|.+.+ .....+..+.+.. ...+|.++-.
T Consensus       158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~--~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~  235 (339)
T PRK10083        158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAK--ESGADWVINNAQEPLGEALEEKGIKPTLIIDA  235 (339)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH--HhCCcEEecCccccHHHHHhcCCCCCCEEEEC
Confidence            4678888777  444555566666 2 3 35888999988887764  2343221 1111111111111 1235666654


Q ss_pred             CCCCCchHHHHhccccCcEEEEE
Q psy8015          97 AAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        97 ~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ...+.......+.|+++|+++..
T Consensus       236 ~g~~~~~~~~~~~l~~~G~~v~~  258 (339)
T PRK10083        236 ACHPSILEEAVTLASPAARIVLM  258 (339)
T ss_pred             CCCHHHHHHHHHHhhcCCEEEEE
Confidence            44333445567999999998874

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=85.30  E-value=9.8  Score=30.86  Aligned_cols=92  Identities=12%  Similarity=0.076  Sum_probs=55.0

Q ss_pred             CCCCCeEEEE--ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEc-cCCCCCCCCCCccEEEEcCCC
Q psy8015          24 HSKRLDCLAL--TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIA-DGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        24 ~~~~~~vLei--~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g-D~~~~~~~~~~fD~I~i~~~~   99 (165)
                      ..+++++|=.  .+.|..++.+++.. .+|+.++.+++..+.++  .+|.+.+-.... +....  ....+|.++-....
T Consensus       167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~--~~g~~~vi~~~~~~~~~~--~~~~~d~v~~~~g~  242 (337)
T cd05283         167 VGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDAL--KLGADEFIATKDPEAMKK--AAGSLDLIIDTVSA  242 (337)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH--HcCCcEEecCcchhhhhh--ccCCceEEEECCCC
Confidence            3567777666  35556666666544 47999999988777764  234332211111 11011  12468988865444


Q ss_pred             CCchHHHHhccccCcEEEEE
Q psy8015         100 PRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus       100 ~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ....+...+.|+++|+++..
T Consensus       243 ~~~~~~~~~~l~~~G~~v~~  262 (337)
T cd05283         243 SHDLDPYLSLLKPGGTLVLV  262 (337)
T ss_pred             cchHHHHHHHhcCCCEEEEE
Confidence            43345667999999998874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PRK13699 putative methylase; Provisional

Probab=85.29  E-value=0.94  Score=35.58  Aligned_cols=49  Identities=14%  Similarity=0.061  Sum_probs=31.8

Q ss_pred             eEEEEccCCCCC--CCCCCccEEEEcCCCC---------------------CchHHHHhccccCcEEEEEec
Q psy8015          73 DYDLIADGRASF--GDNGPYDAIHVGAAYP---------------------RYPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        73 V~~~~gD~~~~~--~~~~~fD~I~i~~~~~---------------------~~p~~l~~~LkpgG~lvi~~~  121 (165)
                      .++++||+.+.+  -+++++|+|+.+....                     ..-.++.+.|||||.+++...
T Consensus         2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~   73 (227)
T PRK13699          2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYG   73 (227)
T ss_pred             CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            356778876532  2346788888874431                     011356789999999998655

>KOG2651|consensus

Probab=85.20  E-value=2.4  Score=36.22  Aligned_cols=51  Identities=10%  Similarity=-0.055  Sum_probs=39.3

Q ss_pred             HHHHHHHHhcC---CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc
Q psy8015          14 VAKYVTYLSGH---SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL   64 (165)
Q Consensus        14 ~~~~l~~l~~~---~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~   64 (165)
                      +.+|-++...+   .+-+.|.|+ .|-||++..++-.. ..|++||-|....+.|+
T Consensus       138 i~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~  193 (476)
T KOG2651|consen  138 IRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQ  193 (476)
T ss_pred             HHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHH
Confidence            33444444333   567899999 99999999998654 58999999988888874

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=85.12  E-value=4.8  Score=31.82  Aligned_cols=91  Identities=11%  Similarity=-0.050  Sum_probs=54.7

Q ss_pred             CCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC---CCCCCCCccEEEEc
Q psy8015          24 HSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA---SFGDNGPYDAIHVG   96 (165)
Q Consensus        24 ~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~---~~~~~~~fD~I~i~   96 (165)
                      ..++++||=. +  +.|..+..+|+.. .+|+++..+++-.+.++  .+|.+.+-....+..+   .+  ...+|.++-.
T Consensus       140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~i~~~--~~~~d~vl~~  215 (320)
T cd08243         140 LQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLK--ELGADEVVIDDGAIAEQLRAA--PGGFDKVLEL  215 (320)
T ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--hcCCcEEEecCccHHHHHHHh--CCCceEEEEC
Confidence            3578888765 3  4566666666654 47999998888777663  3454322111111100   11  2469988754


Q ss_pred             CCCCCchHHHHhccccCcEEEEE
Q psy8015          97 AAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        97 ~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ... ...+..++.|+++|+++..
T Consensus       216 ~~~-~~~~~~~~~l~~~g~~v~~  237 (320)
T cd08243         216 VGT-ATLKDSLRHLRPGGIVCMT  237 (320)
T ss_pred             CCh-HHHHHHHHHhccCCEEEEE
Confidence            443 4455667999999998653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=84.92  E-value=4.3  Score=32.86  Aligned_cols=96  Identities=17%  Similarity=0.041  Sum_probs=59.2

Q ss_pred             cCCCCCeEEEE-cc--ccHHHHHHhccCC-cEEEEeCCHHHHHhcccccCCCCCeEEEEc-cCC---CCCCCCCCccEEE
Q psy8015          23 GHSKRLDCLAL-TS--NTKQSTTLPTFIP-NSFNINVYYYLSGGPLSSTIDPDHDYDLIA-DGR---ASFGDNGPYDAIH   94 (165)
Q Consensus        23 ~~~~~~~vLei-~G--sG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g-D~~---~~~~~~~~fD~I~   94 (165)
                      ...++++||=. ++  .|..++.+++..+ +|+.+..+++-.+.++  .+|.+.+--... |..   ..+.....+|.++
T Consensus       162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~--~~g~~~v~~~~~~~~~~~~~~~~~~~~vd~vl  239 (341)
T cd08297         162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAK--ELGADAFVDFKKSDDVEAVKELTGGGGAHAVV  239 (341)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH--HcCCcEEEcCCCccHHHHHHHHhcCCCCCEEE
Confidence            34678888877 43  6777777777654 8999999987776653  344332111111 110   0111234699888


Q ss_pred             EcCCCCCchHHHHhccccCcEEEEEe
Q psy8015          95 VGAAYPRYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        95 i~~~~~~~p~~l~~~LkpgG~lvi~~  120 (165)
                      -+..........++.|+++|+++..-
T Consensus       240 ~~~~~~~~~~~~~~~l~~~g~~v~~g  265 (341)
T cd08297         240 VTAVSAAAYEQALDYLRPGGTLVCVG  265 (341)
T ss_pred             EcCCchHHHHHHHHHhhcCCEEEEec
Confidence            54444445566789999999998753

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=84.81  E-value=1.4  Score=35.43  Aligned_cols=67  Identities=9%  Similarity=-0.097  Sum_probs=45.0

Q ss_pred             eEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC-CC-CccEEEEcCCCC
Q psy8015          29 DCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD-NG-PYDAIHVGAAYP  100 (165)
Q Consensus        29 ~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~-~~-~fD~I~i~~~~~  100 (165)
                      +++|+ ||.|.++.-|.... ..|.++|+++.+.+.-+.. ++    ....+|..+.... .. .+|+++.+..+.
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N-~~----~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ   72 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKAN-FP----EVICGDITEIDPSDLPKDVDLLIGGPPCQ   72 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHH-HT----EEEESHGGGCHHHHHHHT-SEEEEE---T
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhc-cc----ccccccccccccccccccceEEEeccCCc
Confidence            79999 99999998887766 5789999999988866422 11    7788887653211 12 599888775543

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=84.60  E-value=0.17  Score=35.44  Aligned_cols=31  Identities=23%  Similarity=0.345  Sum_probs=21.3

Q ss_pred             CccEEEEcCCCCC------------chHHHHhccccCcEEEEE
Q psy8015          89 PYDAIHVGAAYPR------------YPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        89 ~fD~I~i~~~~~~------------~p~~l~~~LkpgG~lvi~  119 (165)
                      .||+|++-.....            +-..+.++|+|||++++-
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE   43 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE   43 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence            4888887543322            234678999999999985

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria

Probab=84.17  E-value=1.1  Score=30.67  Aligned_cols=78  Identities=13%  Similarity=0.084  Sum_probs=50.7

Q ss_pred             eEEEEccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCCchHHHHh
Q psy8015          29 DCLALTSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIH  108 (165)
Q Consensus        29 ~vLei~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p~~l~~  108 (165)
                      +||=+||+|..|..++.            ++-+.++  +.|+ ++++......+.......||+|+++.-..+.-+.+.+
T Consensus         2 ~Ill~C~~GaSSs~la~------------km~~~a~--~~gi-~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~   66 (99)
T cd05565           2 NVLVLCAGGGTSGLLAN------------ALNKGAK--ERGV-PLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKK   66 (99)
T ss_pred             EEEEECCCCCCHHHHHH------------HHHHHHH--HCCC-cEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHH
Confidence            35523999988877764            3344443  3354 3665555543322223569999998888788888888


Q ss_pred             ccccCcEEEEEec
Q psy8015         109 HLKSGGRLVIPIG  121 (165)
Q Consensus       109 ~LkpgG~lvi~~~  121 (165)
                      .+.+.|.-|..+.
T Consensus        67 ~~~~~~ipv~~I~   79 (99)
T cd05565          67 DTDRLGIKLVTTT   79 (99)
T ss_pred             HhhhcCCCEEEeC
Confidence            8888888777665

In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=84.03  E-value=1.1  Score=38.26  Aligned_cols=31  Identities=3%  Similarity=-0.187  Sum_probs=26.8

Q ss_pred             ccccHHH----HHHhccCCcEEEEeCCHHHHHhcc
Q psy8015          34 TSNTKQS----TTLPTFIPNSFNINVYYYLSGGPL   64 (165)
Q Consensus        34 ~GsG~~t----~~la~~~~~V~aiD~~~~~~~~A~   64 (165)
                      .|+||++    ++||.++++|+++|++++-++.-+
T Consensus         6 iGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln   40 (414)
T COG1004           6 IGTGYVGLVTGACLAELGHEVVCVDIDESKVELLN   40 (414)
T ss_pred             ECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHh
Confidence            5999976    678888899999999999998774

>COG4017 Uncharacterized protein conserved in archaea [Function unknown]

Probab=83.99  E-value=4.6  Score=31.49  Aligned_cols=80  Identities=9%  Similarity=-0.047  Sum_probs=52.6

Q ss_pred             CCCCeEEEE--ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCCc
Q psy8015          25 SKRLDCLAL--TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRY  102 (165)
Q Consensus        25 ~~~~~vLei--~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~  102 (165)
                      ..++++|=+  -=+|..++.+.....+|+-+|++|.|-...      ..||+|..+-    -+..+.+|+|+=-.+..-+
T Consensus        43 ~E~~~vli~G~YltG~~~a~~Ls~~~~vtv~Di~p~~r~~l------p~~v~Fr~~~----~~~~G~~DlivDlTGlGG~  112 (254)
T COG4017          43 EEFKEVLIFGVYLTGNYTAQMLSKADKVTVVDIHPFMRGFL------PNNVKFRNLL----KFIRGEVDLIVDLTGLGGI  112 (254)
T ss_pred             cCcceEEEEEeeehhHHHHHHhcccceEEEecCCHHHHhcC------CCCccHhhhc----CCCCCceeEEEeccccCCC
Confidence            346777777  445655555444478999999999876433      2457777662    2234789998876666655


Q ss_pred             hHHHHhccccCc
Q psy8015         103 PEIFIHHLKSGG  114 (165)
Q Consensus       103 p~~l~~~LkpgG  114 (165)
                      .++..+.+.|+-
T Consensus       113 ~Pe~L~~fnp~v  124 (254)
T COG4017         113 EPEFLAKFNPKV  124 (254)
T ss_pred             CHHHHhccCCce
Confidence            555567788853

>KOG1198|consensus

Probab=83.71  E-value=2.1  Score=35.81  Aligned_cols=95  Identities=13%  Similarity=-0.057  Sum_probs=56.2

Q ss_pred             CCCCeEEEE-c--cccHHHHHHhccCC-cEEEEeCCHHHHHhcccccCCCCC-eEEEEccCCCCCCC--CCCccEEEEcC
Q psy8015          25 SKRLDCLAL-T--SNTKQSTTLPTFIP-NSFNINVYYYLSGGPLSSTIDPDH-DYDLIADGRASFGD--NGPYDAIHVGA   97 (165)
Q Consensus        25 ~~~~~vLei-~--GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~~~~~n-V~~~~gD~~~~~~~--~~~fD~I~i~~   97 (165)
                      ++++.||=+ .  |-|..+..+|+..+ ..+..-.+++-.+.++  ++|.+. +.+...|..+....  ...||+|+=..
T Consensus       156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k--~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~v  233 (347)
T KOG1198|consen  156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVK--KLGADEVVDYKDENVVELIKKYTGKGVDVVLDCV  233 (347)
T ss_pred             CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHH--HcCCcEeecCCCHHHHHHHHhhcCCCccEEEECC
Confidence            578888887 3  34456666676666 6666677777777664  344433 33333333322222  45799887666


Q ss_pred             CCCCchHHHHhccccCcEEEEEec
Q psy8015          98 AYPRYPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        98 ~~~~~p~~l~~~LkpgG~lvi~~~  121 (165)
                      +-+.........++.|+..++...
T Consensus       234 g~~~~~~~~~~l~~~g~~~~i~~~  257 (347)
T KOG1198|consen  234 GGSTLTKSLSCLLKGGGGAYIGLV  257 (347)
T ss_pred             CCCccccchhhhccCCceEEEEec
Confidence            555555565556666666666544

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=83.51  E-value=5.7  Score=32.73  Aligned_cols=92  Identities=8%  Similarity=-0.050  Sum_probs=56.6

Q ss_pred             CCCCCeEEEE-c-cccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccC---CC---CCCCCCCccEE
Q psy8015          24 HSKRLDCLAL-T-SNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADG---RA---SFGDNGPYDAI   93 (165)
Q Consensus        24 ~~~~~~vLei-~-GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~---~~---~~~~~~~fD~I   93 (165)
                      ..++++||-. + +.|..+..+++..+  +|++++.+++..+.++  .+|.+.  ++..+.   ..   .+.+...+|.+
T Consensus       180 ~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~--~~g~~~--vv~~~~~~~~~~l~~~~~~~~vd~v  255 (363)
T cd08279         180 VRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELAR--RFGATH--TVNASEDDAVEAVRDLTDGRGADYA  255 (363)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH--HhCCeE--EeCCCCccHHHHHHHHcCCCCCCEE
Confidence            3678899888 4 35666666776553  4999998888777663  344421  221111   00   11223469987


Q ss_pred             EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +-........+..++.|+++|+++..
T Consensus       256 ld~~~~~~~~~~~~~~l~~~G~~v~~  281 (363)
T cd08279         256 FEAVGRAATIRQALAMTRKGGTAVVV  281 (363)
T ss_pred             EEcCCChHHHHHHHHHhhcCCeEEEE
Confidence            75444344456678999999998875

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=83.46  E-value=4.4  Score=36.60  Aligned_cols=84  Identities=4%  Similarity=-0.079  Sum_probs=57.1

Q ss_pred             ccccHHHHHHhccC----CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--C--CCCCCccEEEEcCCCCCchH-
Q psy8015          34 TSNTKQSTTLPTFI----PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--F--GDNGPYDAIHVGAAYPRYPE-  104 (165)
Q Consensus        34 ~GsG~~t~~la~~~----~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~--~~~~~fD~I~i~~~~~~~p~-  104 (165)
                      ||.|-++..+++..    .+++.+|.|++.++.++.  .   +..++.||+.+.  +  ..-++.|.+++....++.-. 
T Consensus       406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--~---g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~  480 (621)
T PRK03562        406 AGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK--F---GMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSLQ  480 (621)
T ss_pred             EecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--c---CCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHH
Confidence            89999888887742    479999999999998753  2   357899998752  1  22357898888655432221 


Q ss_pred             --HHHhccccCcEEEEEecC
Q psy8015         105 --IFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus       105 --~l~~~LkpgG~lvi~~~~  122 (165)
                        ...+.+.|.-++++-..+
T Consensus       481 i~~~ar~~~p~~~iiaRa~d  500 (621)
T PRK03562        481 LVELVKEHFPHLQIIARARD  500 (621)
T ss_pred             HHHHHHHhCCCCeEEEEECC
Confidence              335666777776664443

>PLN02702 L-idonate 5-dehydrogenase

Probab=83.26  E-value=7.9  Score=31.83  Aligned_cols=94  Identities=9%  Similarity=0.038  Sum_probs=55.6

Q ss_pred             CCCCCeEEEE-c-cccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEE---ccCCCC---C--CCCCCcc
Q psy8015          24 HSKRLDCLAL-T-SNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLI---ADGRAS---F--GDNGPYD   91 (165)
Q Consensus        24 ~~~~~~vLei-~-GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~---gD~~~~---~--~~~~~fD   91 (165)
                      ..++++||=. + +.|..+..+|+..+  .|++++.+++..+.++  .+|.+.+....   .+..+.   +  ...+.+|
T Consensus       179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  256 (364)
T PLN02702        179 IGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAK--QLGADEIVLVSTNIEDVESEVEEIQKAMGGGID  256 (364)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH--HhCCCEEEecCcccccHHHHHHHHhhhcCCCCC
Confidence            3678888887 3 34556666666543  5899999888777654  33443322111   111110   1  1124689


Q ss_pred             EEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          92 AIHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        92 ~I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      .++-...........++.|+++|+++..
T Consensus       257 ~vid~~g~~~~~~~~~~~l~~~G~~v~~  284 (364)
T PLN02702        257 VSFDCVGFNKTMSTALEATRAGGKVCLV  284 (364)
T ss_pred             EEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            8876544334456667999999997754

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=82.95  E-value=4.1  Score=33.05  Aligned_cols=94  Identities=13%  Similarity=0.066  Sum_probs=54.2

Q ss_pred             CCCCeEEEE-cc-ccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeE-EEEccC---CCCCCCCCCccEEEEc
Q psy8015          25 SKRLDCLAL-TS-NTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDY-DLIADG---RASFGDNGPYDAIHVG   96 (165)
Q Consensus        25 ~~~~~vLei-~G-sG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~-~~~gD~---~~~~~~~~~fD~I~i~   96 (165)
                      .++++||=. +| .|..+..+|+..+  +|+.++.+++-.+.++  ++|.+.+- ....+.   ...+.....+|.|+-.
T Consensus       162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~--~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~  239 (341)
T PRK05396        162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELAR--KMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEM  239 (341)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH--HhCCcEEecCccccHHHHHHHhcCCCCCCEEEEC
Confidence            467888776 43 3666677776554  6888888887666553  33432211 111111   0012223468988764


Q ss_pred             CCCCCchHHHHhccccCcEEEEEe
Q psy8015          97 AAYPRYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        97 ~~~~~~p~~l~~~LkpgG~lvi~~  120 (165)
                      ...........+.|+++|+++..-
T Consensus       240 ~g~~~~~~~~~~~l~~~G~~v~~g  263 (341)
T PRK05396        240 SGAPSAFRQMLDNMNHGGRIAMLG  263 (341)
T ss_pred             CCCHHHHHHHHHHHhcCCEEEEEe
Confidence            433333455678999999988864

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=82.92  E-value=3.8  Score=34.65  Aligned_cols=61  Identities=7%  Similarity=0.026  Sum_probs=42.7

Q ss_pred             EEecCCchHHHHHHHHH-----HhcC-CC-CCeEEEE-ccccHHHHHHhccC----------CcEEEEeCCHHHHHhcc
Q psy8015           4 VFVSGSVSGAVAKYVTY-----LSGH-SK-RLDCLAL-TSNTKQSTTLPTFI----------PNSFNINVYYYLSGGPL   64 (165)
Q Consensus         4 ~~~~~~~~~~~~~~l~~-----l~~~-~~-~~~vLei-~GsG~~t~~la~~~----------~~V~aiD~~~~~~~~A~   64 (165)
                      +||+++++...+.++..     +..+ .| .-.++|+ .|.|.++.-+.+..          -+++-+|.|+++.+.=+
T Consensus        48 FiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk  126 (370)
T COG1565          48 FITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQK  126 (370)
T ss_pred             eeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHH
Confidence            57888888886654432     2211 22 4579999 99999987665532          37899999999987543

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=81.78  E-value=12  Score=29.60  Aligned_cols=93  Identities=10%  Similarity=-0.052  Sum_probs=53.1

Q ss_pred             cCCCCCeEEEE--ccccHHHHHHhccC-Cc-EEEEeCCHHHHHhcccccCCCCCeEEEEccCC---C---CCCCCCCccE
Q psy8015          23 GHSKRLDCLAL--TSNTKQSTTLPTFI-PN-SFNINVYYYLSGGPLSSTIDPDHDYDLIADGR---A---SFGDNGPYDA   92 (165)
Q Consensus        23 ~~~~~~~vLei--~GsG~~t~~la~~~-~~-V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~---~---~~~~~~~fD~   92 (165)
                      ...++++||=.  .+.|..++.+|+.. .+ |+++..+++-.+.+  +.+|.+.  ++..+..   .   .+.....+|+
T Consensus       126 ~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~--~~~g~~~--~~~~~~~~~~~~l~~~~~~~~vd~  201 (312)
T cd08269         126 WIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALA--RELGATE--VVTDDSEAIVERVRELTGGAGADV  201 (312)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH--HHhCCce--EecCCCcCHHHHHHHHcCCCCCCE
Confidence            34678888776  33444445555544 35 99998888776644  2334321  1111110   0   1112245998


Q ss_pred             EEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          93 IHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        93 I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ++-........+...+.|+++|+++..
T Consensus       202 vld~~g~~~~~~~~~~~l~~~g~~~~~  228 (312)
T cd08269         202 VIEAVGHQWPLDLAGELVAERGRLVIF  228 (312)
T ss_pred             EEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            876543334455667999999998864

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=81.33  E-value=7.4  Score=32.15  Aligned_cols=93  Identities=8%  Similarity=-0.063  Sum_probs=54.5

Q ss_pred             CCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCC-eEEEEc--cCC---CCCCCCCCccEE
Q psy8015          24 HSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDH-DYDLIA--DGR---ASFGDNGPYDAI   93 (165)
Q Consensus        24 ~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~n-V~~~~g--D~~---~~~~~~~~fD~I   93 (165)
                      ..++++||=.  .+.|..++.+|+..+  .|++++.+++..+.++  ++|.+. +.....  +..   ..+.. +.+|.+
T Consensus       181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~--~~g~~~~v~~~~~~~~~~~~l~~~~~-~~~d~v  257 (365)
T cd05279         181 VTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAK--QLGATECINPRDQDKPIVEVLTEMTD-GGVDYA  257 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH--HhCCCeecccccccchHHHHHHHHhC-CCCcEE
Confidence            4678898887  344555566666554  4889998888877763  344422 111111  100   01112 468988


Q ss_pred             EEcCCCCCchHHHHhccc-cCcEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLK-SGGRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~Lk-pgG~lvi~  119 (165)
                      +-........+...+.|+ ++|+++..
T Consensus       258 id~~g~~~~~~~~~~~l~~~~G~~v~~  284 (365)
T cd05279         258 FEVIGSADTLKQALDATRLGGGTSVVV  284 (365)
T ss_pred             EECCCCHHHHHHHHHHhccCCCEEEEE
Confidence            754433334455678899 99998864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=81.27  E-value=5.2  Score=32.25  Aligned_cols=90  Identities=8%  Similarity=-0.126  Sum_probs=51.4

Q ss_pred             CCCeEEEE-ccccH---HHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC---C---CCCCCCCccEEE
Q psy8015          26 KRLDCLAL-TSNTK---QSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR---A---SFGDNGPYDAIH   94 (165)
Q Consensus        26 ~~~~vLei-~GsG~---~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~---~---~~~~~~~fD~I~   94 (165)
                      ++++++=+ .|+|.   .+..+|+.. .+|++++.+++-.+.++  ++|.+.  ++..+..   +   .......+|.++
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~--~~g~~~--~i~~~~~~~~~~v~~~~~~~~~d~vi  217 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLK--KIGAEY--VLNSSDPDFLEDLKELIAKLNATIFF  217 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--HcCCcE--EEECCCccHHHHHHHHhCCCCCcEEE
Confidence            45555544 45554   445555554 47999999998777764  345432  2221111   0   111223589887


Q ss_pred             EcCCCCCchHHHHhccccCcEEEEEe
Q psy8015          95 VGAAYPRYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        95 i~~~~~~~p~~l~~~LkpgG~lvi~~  120 (165)
                      -..+.+.. ....+.|+++|+++..-
T Consensus       218 d~~g~~~~-~~~~~~l~~~G~~v~~g  242 (324)
T cd08291         218 DAVGGGLT-GQILLAMPYGSTLYVYG  242 (324)
T ss_pred             ECCCcHHH-HHHHHhhCCCCEEEEEE
Confidence            54443333 44578899999998753

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>KOG0822|consensus

Probab=81.24  E-value=3.9  Score=36.43  Aligned_cols=68  Identities=12%  Similarity=-0.042  Sum_probs=45.1

Q ss_pred             cEEEEeCCHHHHHhcc-cccCCCC-CeEEEEccCCCCCCC-CCCccEEEEc--C--CCCCch----HHHHhccccCcEEE
Q psy8015          49 NSFNINVYYYLSGGPL-SSTIDPD-HDYDLIADGRASFGD-NGPYDAIHVG--A--AYPRYP----EIFIHHLKSGGRLV  117 (165)
Q Consensus        49 ~V~aiD~~~~~~~~A~-~~~~~~~-nV~~~~gD~~~~~~~-~~~fD~I~i~--~--~~~~~p----~~l~~~LkpgG~lv  117 (165)
                      +++++|.+|.++-.-+ .+..+-+ .|+++..|-.. |.+ ..+.|.++.-  |  +..++.    +...+.|||.|+-+
T Consensus       397 klyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~-w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI  475 (649)
T KOG0822|consen  397 KLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRK-WNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISI  475 (649)
T ss_pred             EEEEEecCcchhhhhhhhchhhhcCeeEEEeccccc-cCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence            6899999999988764 2222233 59999999754 443 4678977653  2  223443    34568999997643

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=81.22  E-value=10  Score=30.63  Aligned_cols=92  Identities=11%  Similarity=-0.015  Sum_probs=53.1

Q ss_pred             CCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCC---------CCCCCCCCc
Q psy8015          24 HSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR---------ASFGDNGPY   90 (165)
Q Consensus        24 ~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~---------~~~~~~~~f   90 (165)
                      ..++++||=.  .+.|..+..+|+..+  .+++++.+++..+.++  ++|.+  .++..+..         ........+
T Consensus       159 ~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~--~~g~~--~~i~~~~~~~~~~~~~~~~~~~~~~~  234 (341)
T cd08262         159 LTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALAL--AMGAD--IVVDPAADSPFAAWAAELARAGGPKP  234 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH--HcCCc--EEEcCCCcCHHHHHHHHHHHhCCCCC
Confidence            3678888777  444455555665543  4888998888887764  23332  11111110         001122459


Q ss_pred             cEEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          91 DAIHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        91 D~I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      |.++-...........++.|+++|+++..
T Consensus       235 d~vid~~g~~~~~~~~~~~l~~~g~~v~~  263 (341)
T cd08262         235 AVIFECVGAPGLIQQIIEGAPPGGRIVVV  263 (341)
T ss_pred             CEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            98874333223455667899999998764

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=81.04  E-value=16  Score=31.11  Aligned_cols=82  Identities=9%  Similarity=-0.050  Sum_probs=52.1

Q ss_pred             HHHHHHHHHhcCC-CCCeEEEEccccHHHHHHhccC----CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--C-
Q psy8015          13 AVAKYVTYLSGHS-KRLDCLALTSNTKQSTTLPTFI----PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--F-   84 (165)
Q Consensus        13 ~~~~~l~~l~~~~-~~~~vLei~GsG~~t~~la~~~----~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~-   84 (165)
                      ...++.+.+.... +.++++= ||.|.++..+++..    .+|+.+|.+++.++..+.+   ..++.++.||+.+.  + 
T Consensus       216 ~l~~~~~~~~~~~~~~~~iiI-iG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~---~~~~~~i~gd~~~~~~L~  291 (453)
T PRK09496        216 HIRAVMSEFGRLEKPVKRVMI-VGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE---LPNTLVLHGDGTDQELLE  291 (453)
T ss_pred             HHHHHHHHhCccCCCCCEEEE-ECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH---CCCCeEEECCCCCHHHHH
Confidence            4455555553321 2344432 79999988877743    4799999999988866422   13578899998642  1 


Q ss_pred             -CCCCCccEEEEcCC
Q psy8015          85 -GDNGPYDAIHVGAA   98 (165)
Q Consensus        85 -~~~~~fD~I~i~~~   98 (165)
                       .....+|.+++...
T Consensus       292 ~~~~~~a~~vi~~~~  306 (453)
T PRK09496        292 EEGIDEADAFIALTN  306 (453)
T ss_pred             hcCCccCCEEEECCC
Confidence             12357898887544

>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)

Probab=80.93  E-value=1.1  Score=30.31  Aligned_cols=78  Identities=10%  Similarity=-0.075  Sum_probs=46.7

Q ss_pred             EEEEccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCCchHHHHhc
Q psy8015          30 CLALTSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHH  109 (165)
Q Consensus        30 vLei~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p~~l~~~  109 (165)
                      ||=+||+|..|..++..            +-+.  +++.|+ ++++...+..+.......||+|++..-..+.-+.+.+.
T Consensus         2 Il~~Cg~G~sTS~~~~k------------i~~~--~~~~~~-~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~   66 (96)
T cd05564           2 ILLVCSAGMSTSILVKK------------MKKA--AEKRGI-DAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKK   66 (96)
T ss_pred             EEEEcCCCchHHHHHHH------------HHHH--HHHCCC-ceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHH
Confidence            34339999988876532            2222  234455 36666666543211235699999977776666777666


Q ss_pred             cccCcEEEEEecC
Q psy8015         110 LKSGGRLVIPIGD  122 (165)
Q Consensus       110 LkpgG~lvi~~~~  122 (165)
                      ..+.+.-+..++.
T Consensus        67 ~~~~~~pv~~I~~   79 (96)
T cd05564          67 AAEYGIPVAVIDM   79 (96)
T ss_pred             hccCCCcEEEcCh
Confidence            6666665665543

In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=80.34  E-value=10  Score=30.11  Aligned_cols=82  Identities=5%  Similarity=-0.115  Sum_probs=45.2

Q ss_pred             cHHHHHHhccCCcEEEEeCCHHHHHhcc-----cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCCch---HHHHh
Q psy8015          37 TKQSTTLPTFIPNSFNINVYYYLSGGPL-----SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYP---EIFIH  108 (165)
Q Consensus        37 G~~t~~la~~~~~V~aiD~~~~~~~~A~-----~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p---~~l~~  108 (165)
                      ++++..|++...+|+.+++++. ++..+     +...+ .+..+....+.....+..+||.|++.--.....   +.+..
T Consensus         4 ~~~a~~L~~~G~~V~l~~r~~~-~~~i~~~Gl~i~~~~-~~~~~~~~~~~~~~~~~~~~D~iiv~vKs~~~~~~l~~l~~   81 (293)
T TIGR00745         4 SLYGAYLARAGHDVTLLARGEQ-LEALNQEGLRIVSLG-GEFQFRPVSAATSPEELPPADLVIITVKAYQTEEAAALLLP   81 (293)
T ss_pred             HHHHHHHHhCCCcEEEEecHHH-HHHHHHCCcEEEecC-CcEEEcccccccChhhcCCCCEEEEeccchhHHHHHHHhHh
Confidence            4678888887789999999743 33222     11111 112221112222222245899999975544443   34566


Q ss_pred             ccccCcEEEEEe
Q psy8015         109 HLKSGGRLVIPI  120 (165)
Q Consensus       109 ~LkpgG~lvi~~  120 (165)
                      .+.++..++...
T Consensus        82 ~l~~~~~iv~~q   93 (293)
T TIGR00745        82 LIGKNTKVLFLQ   93 (293)
T ss_pred             hcCCCCEEEEcc
Confidence            777777666543

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=80.28  E-value=14  Score=28.84  Aligned_cols=91  Identities=13%  Similarity=-0.030  Sum_probs=48.7

Q ss_pred             CCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--CCCCCCccEEEEcC
Q psy8015          24 HSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--FGDNGPYDAIHVGA   97 (165)
Q Consensus        24 ~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~~~~~~fD~I~i~~   97 (165)
                      ..++++||=. +  +.|..++.+++.. .+|+.++.++ ..+.++  .++...  ++.......  ......+|.++-..
T Consensus       142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~--~~g~~~--~~~~~~~~~~~~~~~~~~d~v~~~~  216 (309)
T cd05289         142 LKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLR--SLGADE--VIDYTKGDFERAAAPGGVDAVLDTV  216 (309)
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHH--HcCCCE--EEeCCCCchhhccCCCCceEEEECC
Confidence            3578888744 3  2344444455443 4788887666 444442  234321  111111000  12234689887643


Q ss_pred             CCCCchHHHHhccccCcEEEEEe
Q psy8015          98 AYPRYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        98 ~~~~~p~~l~~~LkpgG~lvi~~  120 (165)
                      ... .....++.|+++|+++..-
T Consensus       217 ~~~-~~~~~~~~l~~~g~~v~~g  238 (309)
T cd05289         217 GGE-TLARSLALVKPGGRLVSIA  238 (309)
T ss_pred             chH-HHHHHHHHHhcCcEEEEEc
Confidence            333 4456678999999987653

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=80.18  E-value=0.31  Score=34.81  Aligned_cols=49  Identities=20%  Similarity=0.255  Sum_probs=31.8

Q ss_pred             CeEEEEccCCCCCCC-CCCccEEEEcCCCC-Cch--------HHHHhccccCcEEEEEe
Q psy8015          72 HDYDLIADGRASFGD-NGPYDAIHVGAAYP-RYP--------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        72 nV~~~~gD~~~~~~~-~~~fD~I~i~~~~~-~~p--------~~l~~~LkpgG~lvi~~  120 (165)
                      ++++..||+.+.++. ...||+||.++-.+ .-|        ..+.+.++|||++....
T Consensus        32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys   90 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYS   90 (124)
T ss_dssp             EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES-
T ss_pred             EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEee
Confidence            468889998654433 36899999997544 333        36789999999988754

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=80.16  E-value=8.2  Score=31.19  Aligned_cols=91  Identities=4%  Similarity=-0.018  Sum_probs=51.8

Q ss_pred             CCCCCeEEEE--ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCC---C---CCCCCCCccEE
Q psy8015          24 HSKRLDCLAL--TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR---A---SFGDNGPYDAI   93 (165)
Q Consensus        24 ~~~~~~vLei--~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~---~---~~~~~~~fD~I   93 (165)
                      ..++++||=.  .+.|..+..+|+..+  +|++++.+++-.+.++  ++|..   .+..+-.   .   ...+...+|++
T Consensus       165 ~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~--~~g~~---~~~~~~~~~~~~l~~~~~~~~~dvv  239 (344)
T cd08284         165 VRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAA--ALGAE---PINFEDAEPVERVREATEGRGADVV  239 (344)
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH--HhCCe---EEecCCcCHHHHHHHHhCCCCCCEE
Confidence            3577888666  233444455555544  6999988876666543  23431   1211111   0   01122468987


Q ss_pred             EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +-........+...+.|+++|+++..
T Consensus       240 id~~~~~~~~~~~~~~l~~~g~~v~~  265 (344)
T cd08284         240 LEAVGGAAALDLAFDLVRPGGVISSV  265 (344)
T ss_pred             EECCCCHHHHHHHHHhcccCCEEEEE
Confidence            76444334455667899999997764

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	165
1i1n_A	226	Human Protein L-Isoaspartate O-Methyltransferase Wi		2e-13
1r18_A	227	Drosophila Protein Isoaspartyl Methyltransferase Wi		3e-11
1jg4_A	235	Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-		7e-07
2yxe_A	215	Crystal Structure Of L-Isoaspartyl Protein Carboxyl		1e-05
2pbf_A	227	Crystal Structure Of A Putative Protein-L-Isoaspart		7e-05
3lbf_A	210	Crystal Structure Of Protein L-Isoaspartyl Methyltr		4e-04

>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S- Adenosyl Homocysteine Length = 226

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKF 134
           ++ DGR  + +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct: 138 VVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 197
Query: 135 HNGTIDIQ 142
            +G+I ++
Sbjct: 198 QDGSIKMK 205

>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With S-Adenosyl-L- Homocysteine Length = 227

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 79  DGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIG-DTKQQMLTIYDKFHNG 137
           DGR  +  N PY+AIHVGAA P  P   I+ L SGGRL++P+G D   Q +  YDK  NG
Sbjct: 153 DGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQQYDKDANG 212
Query: 138 TIDI 141
            +++
Sbjct: 213 KVEM 216

>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O- Methyltransferase With S-Adenosylmethionine Length = 235

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGD--TKQQMLTIYDK 133
           ++ DG   F    PYD I V A  P+ PE  I  LK GG+L+IP+G     Q++L +  K
Sbjct: 145 ILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEV-RK 203
Query: 134 FHNGTIDIQHWGVVQVGLL 152
             +G     H GV  V L+
Sbjct: 204 TKDGIKIKNHGGVAFVPLI 222

>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl Methyltranferase Length = 215

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQML 128
           ++ DG   +    PYD I+  AA P+ PE  I  LK GG+L++P+G   Q+++
Sbjct: 133 IVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGRYLQRLV 185

>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O- Methyltransferase Beta-Aspartate Methyltransferase (Pcmt) From Plasmodium Falciparum In Complex With S-Adenosyl-L-Homocysteine Length = 227

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 88  GPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQML 128
           G +DAIHVGA+    PEI +  L   G+L+IPI +   Q+L
Sbjct: 161 GLFDAIHVGASASELPEILVDLLAENGKLIIPIEEDYTQVL 201

>pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl Methyltransferase From Escherichia Coli Length = 210

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 79  DGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGT 138
           DG   +    P+DAI V AA P  P   +  L  GG LV+P+G+  Q +  +  +     
Sbjct: 133 DGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGEEHQYLKRVRRRGGEFI 192
Query: 139 ID 140
           ID
Sbjct: 193 ID 194

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	165
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	2e-19
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	3e-19
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	3e-19
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	4e-18
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	2e-17
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	4e-17
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	4e-17
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	4e-14

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Length = 226

 Score = 80.3 bits (199), Expect = 2e-19
 Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKF 134
           ++ DGR  + +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML  YDK 
Sbjct: 138 VVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKL 197

Query: 135 HNGTIDIQHWGVV 147
            +G+I ++    V
Sbjct: 198 QDGSIKMKPLMGV 210

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} Length = 227

 Score = 80.0 bits (198), Expect = 3e-19
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 75  DLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKF 134
           ++         + G +DAIHVGA+    PEI +  L   G+L+IPI +   Q+L    K 
Sbjct: 148 NIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAENGKLIIPIEEDYTQVLYEITK- 206

Query: 135 HNGTIDIQHWGVV 147
            NG I       V
Sbjct: 207 KNGKIIKDRLFDV 219

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Length = 227

 Score = 80.0 bits (198), Expect = 3e-19
 Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 76  LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIG-DTKQQMLTIYDKF 134
           +  DGR  +  N PY+AIHVGAA P  P   I+ L SGGRL++P+G D   Q +  YDK 
Sbjct: 150 VEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQQYDKD 209

Query: 135 HNGTIDIQHWGVV 147
            NG +++     V
Sbjct: 210 ANGKVEMTRLMGV 222

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231

 Score = 76.9 bits (190), Expect = 4e-18
 Identities = 20/70 (28%), Positives = 28/70 (40%)

Query: 77  IADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHN 136
           + DG   + +  PYD + V A  P         LK GG +++PIG  + Q L    K  N
Sbjct: 122 LGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVGRVQKLYKVIKKGN 181

Query: 137 GTIDIQHWGV 146
                    V
Sbjct: 182 SPSLENLGEV 191

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235

 Score = 75.0 bits (185), Expect = 2e-17
 Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 77  IADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTK-QQMLTIYDKFH 135
           + DG   F    PYD I V A  P+ PE  I  LK GG+L+IP+G     Q L    K  
Sbjct: 146 LGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRKTK 205

Query: 136 NGTIDIQHWGVVQVGLL 152
           +G     H GV  V L+
Sbjct: 206 DGIKIKNHGGVAFVPLI 222

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215

 Score = 74.1 bits (183), Expect = 4e-17
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 77  IADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHN 136
           + DG   +    PYD I+  AA P+ PE  I  LK GG+L++P+G   Q+++   +K  +
Sbjct: 134 VGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGRYLQRLVLA-EKRGD 192

Query: 137 GTIDIQHWGVVQVGLL 152
             I      V  V L+
Sbjct: 193 EIIIKDCGPVAFVPLV 208

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210

 Score = 73.8 bits (182), Expect = 4e-17
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 77  IADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHN 136
             DG   +    P+DAI V AA P  P   +  L  GG LV+P+G+ + Q L    +   
Sbjct: 131 HGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGE-EHQYLKRVRRRGG 189

Query: 137 GTIDIQHWGVVQVGLL 152
             I      V  V L+
Sbjct: 190 EFIIDTVEAVRFVPLV 205

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317

 Score = 67.5 bits (165), Expect = 4e-14
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 78  ADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGD--TKQQMLTIYDKFH 135
            DG     +  PYD I V       PE +   LK GGR+++PI    +++Q   ++ K  
Sbjct: 133 GDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKK-K 191

Query: 136 NGTIDIQHWGVV 147
           +  +   +    
Sbjct: 192 DPYLVGNYKLET 203

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	165
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.93
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.92
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.91
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.91
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.89
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.89
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.85
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.85
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.78
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.75
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.69
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.69
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.69
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.69
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.68
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.68
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.68
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.68
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.67
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.67
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.67
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.66
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.66
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.66
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.66
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.65
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.65
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.65
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.65
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.64
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.64
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.64
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.64
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.63
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.63
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.63
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.62
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.62
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.62
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.62
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.61
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.61
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.61
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.61
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.61
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.61
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.6
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.6
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.6
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.6
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.6
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.59
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.59
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.59
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.59
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.59
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.59
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.59
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.59
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.59
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.58
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.58
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.58
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.58
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.58
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.58
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.58
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.58
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.58
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.58
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.58
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.58
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.58
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.58
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.57
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.57
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.57
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.57
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.57
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.57
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.56
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.56
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.56
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.56
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.56
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.56
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.56
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.56
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.56
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.56
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.56
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.56
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.55
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.55
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.55
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.55
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.55
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.55
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.54
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.54
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.54
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.54
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.54
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.54
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.54
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.54
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.54
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.54
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.54
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.54
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.53
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.53
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.53
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.53
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.53
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.53
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.53
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.52
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.52
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.52
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.52
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.52
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.52
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.52
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.52
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.51
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.51
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.51
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.51
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.51
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.5
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.5
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.5
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.5
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.49
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.49
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.49
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.49
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.48
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.48
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.48
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.48
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.48
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.48
3ocj_A	305	Putative exported protein; structural genomics, PS	99.47
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.47
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.47
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.47
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.47
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.47
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.47
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.47
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.46
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.46
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.46
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.45
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.45
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.45
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.44
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.44
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.44
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.44
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.43
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.43
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.42
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.42
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.42
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.42
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.42
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.41
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.41
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.41
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.4
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.4
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.4
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.39
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.39
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.39
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.39
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.38
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.38
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.38
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.38
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.38
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.37
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.37
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.36
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.36
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.36
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.35
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.35
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.35
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.35
2o07_A	304	Spermidine synthase; structural genomics, structur	99.35
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.35
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.35
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.35
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.35
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.35
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.34
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.34
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.34
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.34
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.34
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.34
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.34
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.33
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.33
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.33
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.33
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.32
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.32
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.32
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.32
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.31
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.31
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.31
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.31
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.31
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.31
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.31
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.31
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.3
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.3
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.28
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.28
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.28
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.27
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.27
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.27
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.27
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.26
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.26
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.26
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.23
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.23
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.23
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.23
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.23
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.22
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.22
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.21
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.21
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.19
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.17
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.17
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.15
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.15
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.15
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.14
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.14
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.13
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.11
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.1
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.1
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.1
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.08
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.08
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.08
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.07
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.05
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.05
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.02
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.01
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.01
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.99
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.98
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.95
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.94
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.91
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.91
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.9
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.9
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.89
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.85
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.84
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.83
3lkd_A	542	Type I restriction-modification system methyltrans	98.81
3khk_A	544	Type I restriction-modification system methylation	98.66
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.63
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.57
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.37
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.31
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.3
3ufb_A	530	Type I restriction-modification system methyltran	98.24
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.22
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.21
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.21
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.2
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.18
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.12
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.08
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.04
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.03
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.91
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.89
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.84
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.65
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.34
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.3
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.22
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	97.1
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	97.1
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	97.09
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	97.06
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.99
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.88
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.82
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.82
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.81
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	96.72
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.71
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.54
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.5
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.43
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.41
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.39
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.36
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	96.36
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.34
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	96.29
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	96.28
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.27
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.26
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	96.22
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	96.17
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	96.12
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.11
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.09
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.08
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.05
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.99
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	95.97
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	95.93
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	95.76
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	95.73
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	95.69
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.67
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.61
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	95.58
3gms_A	340	Putative NADPH:quinone reductase; structural genom	95.57
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	95.55
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	95.47
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.42
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	95.34
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.3
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.29
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	95.28
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	95.26
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	95.21
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.15
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	95.13
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	95.13
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	94.97
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	94.93
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	94.83
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	94.73
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.7
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	94.64
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.52
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	94.5
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	94.42
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	94.41
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	94.36
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	94.18
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	94.14
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	93.88
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	93.76
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	93.69
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	93.66
2zig_A	297	TTHA0409, putative modification methylase; methylt	93.5
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	93.47
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	93.29
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	93.27
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	93.25
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	93.18
3me5_A	482	Cytosine-specific methyltransferase; structural ge	93.15
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	92.98
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	92.96
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	92.95
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	92.77
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	92.7
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	92.27
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	92.17
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	92.01
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	91.99
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	91.94
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	91.75
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	91.52
3c85_A	183	Putative glutathione-regulated potassium-efflux S	91.05
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	91.04
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	90.83
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	90.57
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	90.35
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	89.83
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	89.48
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	89.18
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	88.28
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	88.27
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	87.64
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	87.43
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	87.22
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	86.86
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	86.42
1id1_A	153	Putative potassium channel protein; RCK domain, E.	86.16
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	86.16
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	86.13
1lnq_A	336	MTHK channels, potassium channel related protein;	85.1
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	84.72
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	84.64
3trk_A	324	Nonstructural polyprotein; hydrolase; 2.40A {Chiku	84.41
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	84.22
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	84.12
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	83.47
4gua_A	670	Non-structural polyprotein; viral precursor polypr	82.99
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	82.07
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	82.01
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	80.43
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	80.31

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.93  E-value=6.4e-25  Score=166.99  Aligned_cols=145  Identities=23%  Similarity=0.299  Sum_probs=130.2

Q ss_pred             CchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC
Q psy8015           9 SVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG   85 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~   85 (165)
                      +.+..++++++.+. ..++.+|||+ ||+|+++..+++...+|+++|+++++++.|+  ++..+.+|++++.+|+.+.++
T Consensus        61 ~~~~~~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~  139 (210)
T 3lbf_A           61 SQPYMVARMTELLE-LTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ  139 (210)
T ss_dssp             CCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred             CCHHHHHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc
Confidence            46778889999885 4889999999 9999999999999899999999999999996  666788899999999987666


Q ss_pred             CCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCCceEEEEEEEccCCcEEEEEeeeEEEeeeccCC
Q psy8015          86 DNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVK  156 (165)
Q Consensus        86 ~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~  156 (165)
                      +.++||+|+++...+++++.+.++|||||++++++++ +.+.+..++|.. +.|..+.++.++|.||+++.
T Consensus       140 ~~~~~D~i~~~~~~~~~~~~~~~~L~pgG~lv~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~f~pl~~~~  208 (210)
T 3lbf_A          140 ARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGE-EHQYLKRVRRRG-GEFIIDTVEAVRFVPLVKGE  208 (210)
T ss_dssp             GGCCEEEEEESSBCSSCCTHHHHTEEEEEEEEEEECS-SSCEEEEEEEET-TEEEEEEEEECCCCBCCCSS
T ss_pred             cCCCccEEEEccchhhhhHHHHHhcccCcEEEEEEcC-CceEEEEEEEcC-CeEEEEEeccEEEEEccCcc
Confidence            6689999999999999999999999999999999988 458888888864 57999999999999999875

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.92  E-value=1.1e-24  Score=168.12  Aligned_cols=145  Identities=29%  Similarity=0.368  Sum_probs=126.1

Q ss_pred             CCchHHHHHHHHHHh-cCCCCCeEEEE-ccccHHHHHHhccC--------CcEEEEeCCHHHHHhcc--cccCC-----C
Q psy8015           8 GSVSGAVAKYVTYLS-GHSKRLDCLAL-TSNTKQSTTLPTFI--------PNSFNINVYYYLSGGPL--SSTID-----P   70 (165)
Q Consensus         8 ~~~~~~~~~~l~~l~-~~~~~~~vLei-~GsG~~t~~la~~~--------~~V~aiD~~~~~~~~A~--~~~~~-----~   70 (165)
                      .|.+..++++++++. ...++.+|||+ ||+|+++..+++..        ++|+++|+++++++.|+  ++..+     .
T Consensus        65 ~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~  144 (227)
T 1r18_A           65 ISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS  144 (227)
T ss_dssp             ECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCC
Confidence            357888999999985 24788999999 99999999999864        38999999999999996  44444     5


Q ss_pred             CCeEEEEccCCCCCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCC-CceEEEEEEEccCCcEEEEEeeeEEE
Q psy8015          71 DHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDT-KQQMLTIYDKFHNGTIDIQHWGVVQV  149 (165)
Q Consensus        71 ~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~-~~~~~~~~~k~~~~~~~~~~l~~~~~  149 (165)
                      +|++++.+|+.+.+++.++||+|+++...+++++.+.++|||||+++++++.. ..+.+..++|..++.|+.+.++++.|
T Consensus       145 ~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~  224 (227)
T 1r18_A          145 GQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMY  224 (227)
T ss_dssp             TSEEEEESCGGGCCGGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEESCSSSCEEEEEEEECTTSCEEEEEEEEECC
T ss_pred             CceEEEECCcccCCCcCCCccEEEECCchHHHHHHHHHHhcCCCEEEEEEecCCCceEEEEEEEcCCCcEEEEEeccEEE
Confidence            68999999998766655789999999999999999999999999999999864 34899999997777899999999999


Q ss_pred             eee
Q psy8015         150 GLL  152 (165)
Q Consensus       150 ~pl  152 (165)
                      +||
T Consensus       225 ~p~  227 (227)
T 1r18_A          225 VPL  227 (227)
T ss_dssp             CCC
T ss_pred             eeC
Confidence            996

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.91  E-value=1.5e-23  Score=162.69  Aligned_cols=147  Identities=24%  Similarity=0.316  Sum_probs=129.6

Q ss_pred             CchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC
Q psy8015           9 SVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF   84 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~   84 (165)
                      +.+...+.+++.+. ..++.+|||+ ||+|+++..+++.. .+|+++|+++++++.|+  ++..+.+|++++.+|+...+
T Consensus        75 ~~~~~~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  153 (235)
T 1jg1_A           75 SAPHMVAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGF  153 (235)
T ss_dssp             CCHHHHHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred             ccHHHHHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCC
Confidence            46778889999885 4789999999 99999999999987 89999999999999996  56678888999999986566


Q ss_pred             CCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEeeeccCCC
Q psy8015          85 GDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGLLYDVKA  157 (165)
Q Consensus        85 ~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~~  157 (165)
                      ++..+||+|+++...+++++.+.++|||||+++++++.... +.+..++|. ++.|+.+.+++++|+|+++..+
T Consensus       154 ~~~~~fD~Ii~~~~~~~~~~~~~~~L~pgG~lvi~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~f~p~~~~~~  226 (235)
T 1jg1_A          154 PPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRKT-KDGIKIKNHGGVAFVPLIGEYG  226 (235)
T ss_dssp             GGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEECSSSSCEEEEEEEEE-TTEEEEEEEEEECCCBCBSTTS
T ss_pred             CCCCCccEEEECCcHHHHHHHHHHhcCCCcEEEEEEecCCCccEEEEEEEe-CCeEEEEEeccEEEEEccCCCc
Confidence            55567999999999999999999999999999999987665 888888885 5689999999999999999863

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.91  E-value=5.5e-24  Score=163.76  Aligned_cols=146  Identities=21%  Similarity=0.151  Sum_probs=125.6

Q ss_pred             CCchHHHHHHHHHHh-cCCCCCeEEEE-ccccHHHHHHhccCC-------cEEEEeCCHHHHHhcc--cccCC-----CC
Q psy8015           8 GSVSGAVAKYVTYLS-GHSKRLDCLAL-TSNTKQSTTLPTFIP-------NSFNINVYYYLSGGPL--SSTID-----PD   71 (165)
Q Consensus         8 ~~~~~~~~~~l~~l~-~~~~~~~vLei-~GsG~~t~~la~~~~-------~V~aiD~~~~~~~~A~--~~~~~-----~~   71 (165)
                      .+.+...+++++++. ...++.+|||+ ||+|+++..+++..+       +|+++|+++++++.|+  ++..+     .+
T Consensus        61 ~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~  140 (227)
T 2pbf_A           61 ISAPHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKID  140 (227)
T ss_dssp             ECCHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSST
T ss_pred             cCChHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccC
Confidence            346778889999985 24789999999 999999999999875       9999999999999996  44445     57


Q ss_pred             CeEEEEccCCCCC----CCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCCceEEEEEEEccCCcEEEEEeeeE
Q psy8015          72 HDYDLIADGRASF----GDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVV  147 (165)
Q Consensus        72 nV~~~~gD~~~~~----~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~~~~~~~~~k~~~~~~~~~~l~~~  147 (165)
                      |++++.+|+.+.+    ...++||+|+++...+++++.+.++|||||+++++++....+.+..++| .++.|+.+.++++
T Consensus       141 ~v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  219 (227)
T 2pbf_A          141 NFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAENGKLIIPIEEDYTQVLYEITK-KNGKIIKDRLFDV  219 (227)
T ss_dssp             TEEEEECCGGGCCHHHHHHHCCEEEEEECSBBSSCCHHHHHHEEEEEEEEEEEEETTEEEEEEEEC-SCC-CEEEEEEEE
T ss_pred             CEEEEECChHhcccccCccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEEccCCceEEEEEEE-eCCeEEEEEeccE
Confidence            8999999998765    4457899999999999999999999999999999998755588888888 5678999999999


Q ss_pred             EEeeecc
Q psy8015         148 QVGLLYD  154 (165)
Q Consensus       148 ~~~pl~~  154 (165)
                      +|+||++
T Consensus       220 ~~~pl~~  226 (227)
T 2pbf_A          220 CFVSLKK  226 (227)
T ss_dssp             CCCBCCC
T ss_pred             EEEeccC
Confidence            9999975

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.89  E-value=9.7e-23  Score=155.40  Aligned_cols=148  Identities=24%  Similarity=0.325  Sum_probs=129.2

Q ss_pred             CchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCC
Q psy8015           9 SVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRA   82 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~   82 (165)
                      +.+...+.+++.+. ..++.+|||+ ||+|+++..+++..   .+|+++|+++++++.|+  ++..+.+|++++.+|+..
T Consensus        61 ~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~  139 (215)
T 2yxe_A           61 SAIHMVGMMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTL  139 (215)
T ss_dssp             CCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGG
T ss_pred             CcHHHHHHHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc
Confidence            34677888888885 4789999999 99999999999987   68999999999999996  555677889999999866


Q ss_pred             CCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCCceEEEEEEEccCCcEEEEEeeeEEEeeeccCCCCCC
Q psy8015          83 SFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVKAGYS  160 (165)
Q Consensus        83 ~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~~~~~  160 (165)
                      .++..++||+|+++...+++++.+.++|||||++++.+++.+ +.+..+.|.. +.|..+.++.+.|.|+.+.. .|+
T Consensus       140 ~~~~~~~fD~v~~~~~~~~~~~~~~~~L~pgG~lv~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~-~~~  214 (215)
T 2yxe_A          140 GYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGRYL-QRLVLAEKRG-DEIIIKDCGPVAFVPLVGKE-GFQ  214 (215)
T ss_dssp             CCGGGCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEESSSS-EEEEEEEEET-TEEEEEEEEEECCCBCBSTT-SBC
T ss_pred             CCCCCCCeeEEEECCchHHHHHHHHHHcCCCcEEEEEECCCC-cEEEEEEEeC-CEEEEEEeccEEEEeccccc-cCC
Confidence            555457899999999999999999999999999999998877 8999998874 47999999999999999885 564

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.89  E-value=6.7e-23  Score=157.60  Aligned_cols=152  Identities=28%  Similarity=0.430  Sum_probs=127.8

Q ss_pred             CchHHHHHHHHHHh-cCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCC-----CCCeEEE
Q psy8015           9 SVSGAVAKYVTYLS-GHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTID-----PDHDYDL   76 (165)
Q Consensus         9 ~~~~~~~~~l~~l~-~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~-----~~nV~~~   76 (165)
                      +.+...+.+++++. ...++.+|||+ ||+|+.+..+++..   ++|+++|+++++++.|+  ++..+     .+|++++
T Consensus        59 ~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~  138 (226)
T 1i1n_A           59 SAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV  138 (226)
T ss_dssp             CCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEE
T ss_pred             cCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEE
Confidence            46778888999885 23689999999 99999999999875   58999999999999996  44433     4689999


Q ss_pred             EccCCCCCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEeeeccC
Q psy8015          77 IADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGLLYDV  155 (165)
Q Consensus        77 ~gD~~~~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~  155 (165)
                      .+|+.......++||+|+++...+++++.+.++|||||++++++.+... +.+..+.|..++.|+.+.++++.|+|+.+.
T Consensus       139 ~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~  218 (226)
T 1i1n_A          139 VGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDK  218 (226)
T ss_dssp             ESCGGGCCGGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEESCTTSCEEEEEEEECTTSCEEEEEEEEECCCBCCCH
T ss_pred             ECCcccCcccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEEecCCCceEEEEEEEcCCCcEEEEEcCceEEEeccCC
Confidence            9998765554578999999999999999999999999999999987543 677778887677899999999999999987


Q ss_pred             CCCCC
Q psy8015         156 KAGYS  160 (165)
Q Consensus       156 ~~~~~  160 (165)
                      ...|.
T Consensus       219 ~~~~~  223 (226)
T 1i1n_A          219 EKQWS  223 (226)
T ss_dssp             HHHCC
T ss_pred             ccccc
Confidence            43454

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.85  E-value=5.2e-21  Score=155.10  Aligned_cols=150  Identities=15%  Similarity=0.191  Sum_probs=127.6

Q ss_pred             EecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCc---EEEEeCCHHHHHhcc--cccCCCCCeEEEEc
Q psy8015           5 FVSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPN---SFNINVYYYLSGGPL--SSTIDPDHDYDLIA   78 (165)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~---V~aiD~~~~~~~~A~--~~~~~~~nV~~~~g   78 (165)
                      |...+.+...+.+++.+. ..++++|||| ||+|+++..+++..++   |+++|+++++++.|+  ++..+++|++++.+
T Consensus        55 ~q~~~~~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~  133 (317)
T 1dl5_A           55 YSTSSQPSLMALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCG  133 (317)
T ss_dssp             EEEECCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred             ceeccCHHHHHHHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEEC
Confidence            445567788899999885 4789999999 9999999999987655   999999999999996  56678888999999


Q ss_pred             cCCCCCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCC--ceEEEEEEEccCCcEEEEEeeeEEEeeeccCC
Q psy8015          79 DGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTK--QQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVK  156 (165)
Q Consensus        79 D~~~~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~--~~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~  156 (165)
                      |+.+.++..++||+|+++...+++++.+.+.|||||++++.+++..  .+.+..+.+.. +.|..+.++...+.|+...-
T Consensus       134 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~  212 (317)
T 1dl5_A          134 DGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKD-PYLVGNYKLETRFITAGGNL  212 (317)
T ss_dssp             CGGGCCGGGCCEEEEEECSBBSCCCHHHHHHEEEEEEEEEEBCBGGGTBCEEEEEEEET-TEEEEEEEEECCCCBCCGGG
T ss_pred             ChhhccccCCCeEEEEEcCCHHHHHHHHHHhcCCCcEEEEEECCCCcccceEEEEEEeC-CcEEEEEeccEEEEEccCcc
Confidence            9977555557899999999999999999999999999999987653  36777777765 47999999999999987653

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.85  E-value=1.8e-20  Score=144.21  Aligned_cols=146  Identities=18%  Similarity=0.225  Sum_probs=124.4

Q ss_pred             CchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC
Q psy8015           9 SVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG   85 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~   85 (165)
                      +.+...+.+++.+. ..++.+|||+ ||+|+++..+++...+|+++|+++++++.|+  .+..+  |++++.+|+.+.++
T Consensus        54 ~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~  130 (231)
T 1vbf_A           54 TALNLGIFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYE  130 (231)
T ss_dssp             CCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCG
T ss_pred             CCHHHHHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccc
Confidence            35677888888885 4789999999 9999999999998899999999999999996  44444  89999999977555


Q ss_pred             CCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCCceEEEEEEEccCCcEEEEEeeeEEEeeeccCCCCC
Q psy8015          86 DNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVKAGY  159 (165)
Q Consensus        86 ~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~~~~  159 (165)
                      ..++||+|+++...+++++.+.+.|||||++++.+++...+.+..+.+. .+.|+.+.++.+.|.|+.... +|
T Consensus       131 ~~~~fD~v~~~~~~~~~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-gf  202 (231)
T 1vbf_A          131 EEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVGRVQKLYKVIKK-GNSPSLENLGEVMFGRIGGLY-GF  202 (231)
T ss_dssp             GGCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEECSSSSEEEEEEECC-TTSCEEEEEEEECCCBCCSTT-SC
T ss_pred             cCCCccEEEECCcHHHHHHHHHHHcCCCcEEEEEEcCCCccEEEEEEEc-CCeeEEEEeccEEEEEcCCcc-ch
Confidence            4578999999999999999999999999999999987665777777765 357999999999999998774 55

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.78  E-value=3.3e-19  Score=136.14  Aligned_cols=149  Identities=15%  Similarity=0.062  Sum_probs=111.5

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGD   86 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~   86 (165)
                      ....+.+++.+. ..++++|||+ ||+|+++..+++...+|+++|+++++++.|+  .+..+.+ |++++.+|+.+.++.
T Consensus        41 ~~~~~~~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~  119 (204)
T 3njr_A           41 SPMRALTLAALA-PRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD  119 (204)
T ss_dssp             HHHHHHHHHHHC-CCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT
T ss_pred             HHHHHHHHHhcC-CCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc
Confidence            344556777774 4789999999 9999999999998889999999999999996  5667887 899999999875555


Q ss_pred             CCCccEEEEcCCCCC-chHHHHhccccCcEEEEEecCCC-ceEEEEEEEccCCcEEEEEeeeEEEeeeccCCCCCC--CC
Q psy8015          87 NGPYDAIHVGAAYPR-YPEIFIHHLKSGGRLVIPIGDTK-QQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVKAGYS--MP  162 (165)
Q Consensus        87 ~~~fD~I~i~~~~~~-~p~~l~~~LkpgG~lvi~~~~~~-~~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~~~~~--~~  162 (165)
                      ..+||+|+++..... +.+.+.+.|||||++++...... ...+..+.+..  .+....+......++.... +|.  +|
T Consensus       120 ~~~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~--g~~i~~i~~~~~~~~~~~~-~~~~~~P  196 (204)
T 3njr_A          120 LPLPEAVFIGGGGSQALYDRLWEWLAPGTRIVANAVTLESETLLTQLHARH--GGQLLRIDIAQAEPLGRMR-GWSASRP  196 (204)
T ss_dssp             SCCCSEEEECSCCCHHHHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHH--CSEEEEEEEEEEEEETTEE-EECCCCC
T ss_pred             CCCCCEEEECCcccHHHHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhC--CCcEEEEEeecccccCccc-eeecCCC
Confidence            568999999876532 55778899999999999876432 12222222322  2666666666777776654 554  66


Q ss_pred             C
Q psy8015         163 I  163 (165)
Q Consensus       163 ~  163 (165)
                      |
T Consensus       197 v  197 (204)
T 3njr_A          197 Q  197 (204)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.75  E-value=3.4e-18  Score=129.40  Aligned_cols=151  Identities=13%  Similarity=0.062  Sum_probs=105.7

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG   85 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~   85 (165)
                      ....+.+++.+. ..++.+|||+ ||+|+++..+++..  .+|+++|+++++++.|+  .+..+.+|++++.+|+.+.++
T Consensus        26 ~~i~~~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~  104 (204)
T 3e05_A           26 QEVRAVTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD  104 (204)
T ss_dssp             HHHHHHHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT
T ss_pred             HHHHHHHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh
Confidence            344466777774 4789999999 99999999999987  78999999999999996  555677889999999977666


Q ss_pred             CCCCccEEEEcCCCCCch---HHHHhccccCcEEEEEecCCC-ceEEEEEEEccCCcEEEEEeeeEEEeeeccCCCCCC-
Q psy8015          86 DNGPYDAIHVGAAYPRYP---EIFIHHLKSGGRLVIPIGDTK-QQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVKAGYS-  160 (165)
Q Consensus        86 ~~~~fD~I~i~~~~~~~p---~~l~~~LkpgG~lvi~~~~~~-~~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~~~~~-  160 (165)
                      ..++||+|+++...+...   +.+.+.|||||++++...... ...+..+.+..+-.+....+......++.... .|. 
T Consensus       105 ~~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~~  183 (204)
T 3e05_A          105 DLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYMVEVACVNVAKTKGLTEYK-MFES  183 (204)
T ss_dssp             TSCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCEEEEEEEEEEEEC---CCC-BCEE
T ss_pred             cCCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCceeEEEEEeecceEccceE-Eecc
Confidence            557899999998876444   567899999999999764321 12222222221112333444444555555543 553 


Q ss_pred             -CCC
Q psy8015         161 -MPI  163 (165)
Q Consensus       161 -~~~  163 (165)
                       +|+
T Consensus       184 ~~Pv  187 (204)
T 3e05_A          184 HNPV  187 (204)
T ss_dssp             CCCE
T ss_pred             CCCe
Confidence             665

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.69  E-value=8.4e-17  Score=119.68  Aligned_cols=96  Identities=18%  Similarity=0.207  Sum_probs=77.5

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC--CCCCCCccEEEEcC-C
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS--FGDNGPYDAIHVGA-A   98 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~--~~~~~~fD~I~i~~-~   98 (165)
                      .++++|||+ ||+|+++..+++...+|+++|+|++|++.|+  .+..+++|++++++|....  +. .++||+|+++. .
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~-~~~fD~v~~~~~~   99 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYV-REPIRAAIFNLGY   99 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTC-CSCEEEEEEEEC-
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhc-cCCcCEEEEeCCC
Confidence            689999999 9999999999999889999999999999996  5556778999999776542  33 56899999873 3


Q ss_pred             CCC-------ch-------HHHHhccccCcEEEEEec
Q psy8015          99 YPR-------YP-------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        99 ~~~-------~p-------~~l~~~LkpgG~lvi~~~  121 (165)
                      .+.       .+       +++.+.|||||++++.+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  136 (185)
T 3mti_A          100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY  136 (185)
T ss_dssp             ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence            332       33       567899999999999764

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.69  E-value=2.3e-17  Score=127.58  Aligned_cols=109  Identities=11%  Similarity=0.035  Sum_probs=88.0

Q ss_pred             chHHHHHHHHHHhcCCCCC---eEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCC--CeEEEEc
Q psy8015          10 VSGAVAKYVTYLSGHSKRL---DCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPD--HDYDLIA   78 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~---~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~--nV~~~~g   78 (165)
                      ++...+.++..+....+.+   +|||| ||+|+.|.++++..   ++|+++|+++++++.|+  +++.|..  +++++.+
T Consensus        37 i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~g  116 (221)
T 3dr5_A           37 PDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLS  116 (221)
T ss_dssp             CCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECS
T ss_pred             CCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEc
Confidence            4556666777665444444   99999 99999999999853   68999999999999996  6667775  7999999


Q ss_pred             cCCCCCCC--CCCccEEEEcCCCCCch---HHHHhccccCcEEEE
Q psy8015          79 DGRASFGD--NGPYDAIHVGAAYPRYP---EIFIHHLKSGGRLVI  118 (165)
Q Consensus        79 D~~~~~~~--~~~fD~I~i~~~~~~~p---~~l~~~LkpgG~lvi  118 (165)
                      |+.+.++.  .++||+||+++...+++   +.+.+.|||||++++
T Consensus       117 da~~~l~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~  161 (221)
T 3dr5_A          117 RPLDVMSRLANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVL  161 (221)
T ss_dssp             CHHHHGGGSCTTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEE
T ss_pred             CHHHHHHHhcCCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEE
Confidence            98664332  47899999998887665   467899999999998

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.69  E-value=3.9e-17  Score=124.30  Aligned_cols=111  Identities=11%  Similarity=-0.052  Sum_probs=86.6

Q ss_pred             CCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccc-cC-------------CCCC
Q psy8015           8 GSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSS-TI-------------DPDH   72 (165)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~-~~-------------~~~n   72 (165)
                      +.+.....++++.+. ..++.+|||+ ||+|..+..|++...+|+++|+|++|++.|+.+ ..             ...|
T Consensus         5 ~~~~~~l~~~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~   83 (203)
T 1pjz_A            5 SEVNKDLQQYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPG   83 (203)
T ss_dssp             SSSTHHHHHHHHHHC-CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSS
T ss_pred             ccCCHHHHHHHHhcc-cCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCc
Confidence            345556677777774 4688999999 999999999999888999999999999999722 11             2358


Q ss_pred             eEEEEccCCCCCCCC-CCccEEEEcCCCCCchH--------HHHhccccCcEEEEE
Q psy8015          73 DYDLIADGRASFGDN-GPYDAIHVGAAYPRYPE--------IFIHHLKSGGRLVIP  119 (165)
Q Consensus        73 V~~~~gD~~~~~~~~-~~fD~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~  119 (165)
                      ++++++|+.+..... ++||+|+..+..+++++        ++.+.|||||++++.
T Consensus        84 v~~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~  139 (203)
T 1pjz_A           84 IEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI  139 (203)
T ss_dssp             SEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             cEEEECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            999999987643332 68999999887766542        478999999994443

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.69  E-value=1.3e-16  Score=123.62  Aligned_cols=114  Identities=7%  Similarity=0.054  Sum_probs=93.9

Q ss_pred             cCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC
Q psy8015           7 SGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS   83 (165)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~   83 (165)
                      |.|+......+++++. ..++.+|||+ ||+|.++..+++...+|+++|+++++++.|+  .+..+.+|++++.+|+...
T Consensus         3 ~~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~   81 (239)
T 1xxl_A            3 HHHHHHSLGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL   81 (239)
T ss_dssp             ---CHHHHHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC
T ss_pred             ccccCCCcchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccC
Confidence            4567777888999986 4899999999 9999999999998899999999999999996  4555777999999998764


Q ss_pred             CCCCCCccEEEEcCCCCCch------HHHHhccccCcEEEEEec
Q psy8015          84 FGDNGPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        84 ~~~~~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~~  121 (165)
                      ..+.++||+|++....++++      .++.+.|||||++++...
T Consensus        82 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  125 (239)
T 1xxl_A           82 PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH  125 (239)
T ss_dssp             CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            33457899999998776554      367899999999998643

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.68  E-value=1.6e-16  Score=124.25  Aligned_cols=108  Identities=12%  Similarity=0.118  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCC
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNG   88 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~   88 (165)
                      .....+++.+. ..++.+|||+ ||+|.++..+++...+|+++|++++|++.|+  .+..+.+|++++.+|+.+...+.+
T Consensus        24 ~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~  102 (260)
T 1vl5_A           24 SDLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE  102 (260)
T ss_dssp             CCHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred             HHHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCC
Confidence            34667778775 4789999999 9999999999998889999999999999996  555677799999999876333457


Q ss_pred             CccEEEEcCCCCCch------HHHHhccccCcEEEEEe
Q psy8015          89 PYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        89 ~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~  120 (165)
                      +||+|++....++++      .++.+.|||||++++..
T Consensus       103 ~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A          103 RFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            899999998887665      35789999999999863

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.68  E-value=2.2e-16  Score=116.12  Aligned_cols=110  Identities=13%  Similarity=0.061  Sum_probs=90.4

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASF   84 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~   84 (165)
                      ....+.+++.+. ..++.+|||+ ||+|.++..+++.  ..+|+++|+++++++.|+  ++..+.+ |+ ++.+|+.+.+
T Consensus        11 ~~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~   88 (178)
T 3hm2_A           11 QHVRALAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAF   88 (178)
T ss_dssp             HHHHHHHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGG
T ss_pred             HHHHHHHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhh
Confidence            445667777774 4789999999 9999999999987  468999999999999996  5667776 89 8899987655


Q ss_pred             CCC-CCccEEEEcCCCCC--chHHHHhccccCcEEEEEecC
Q psy8015          85 GDN-GPYDAIHVGAAYPR--YPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        85 ~~~-~~fD~I~i~~~~~~--~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      +.. ++||+|+++...++  +.+.+.+.|||||++++....
T Consensus        89 ~~~~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  129 (178)
T 3hm2_A           89 DDVPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAVT  129 (178)
T ss_dssp             GGCCSCCSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEECS
T ss_pred             hccCCCCCEEEECCcccHHHHHHHHHHhcCCCCEEEEEeec
Confidence            543 78999999988776  567889999999999987653

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.68  E-value=6.7e-17  Score=125.21  Aligned_cols=106  Identities=16%  Similarity=0.108  Sum_probs=85.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCC-
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFG-   85 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~-   85 (165)
                      ..+.++..+....++.+|||+ ||+|+.+..+++.  ..+|+++|+++++++.|+  ++..++. |++++.+|+.+.++ 
T Consensus        58 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  137 (232)
T 3ntv_A           58 LTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFEN  137 (232)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHH
T ss_pred             HHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh
Confidence            344444444334678999999 9999999999984  479999999999999996  6667775 79999999977544 


Q ss_pred             C-CCCccEEEEcCCCCCch---HHHHhccccCcEEEE
Q psy8015          86 D-NGPYDAIHVGAAYPRYP---EIFIHHLKSGGRLVI  118 (165)
Q Consensus        86 ~-~~~fD~I~i~~~~~~~p---~~l~~~LkpgG~lvi  118 (165)
                      . .++||+|+++.....++   +.+.+.|||||++++
T Consensus       138 ~~~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~  174 (232)
T 3ntv_A          138 VNDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVIT  174 (232)
T ss_dssp             HTTSCEEEEEEETTSSSHHHHHHHHGGGEEEEEEEEE
T ss_pred             hccCCccEEEEcCcHHHHHHHHHHHHHhcCCCeEEEE
Confidence            1 47899999998877665   567899999999988

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.68  E-value=1.3e-16  Score=124.86  Aligned_cols=110  Identities=11%  Similarity=0.054  Sum_probs=89.2

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc---CCcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF---IPNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRA   82 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~   82 (165)
                      ++...++++..+....++.+|||| ||+|+.+..+++.   .++|+++|+++++++.|+  +++.+.. ||+++.+|+.+
T Consensus        47 ~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  126 (248)
T 3tfw_A           47 VAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQ  126 (248)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            446677777777545678999999 9999999999997   469999999999999996  6666775 79999999865


Q ss_pred             CCC---CCCCccEEEEcCCCCCch---HHHHhccccCcEEEEE
Q psy8015          83 SFG---DNGPYDAIHVGAAYPRYP---EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        83 ~~~---~~~~fD~I~i~~~~~~~p---~~l~~~LkpgG~lvi~  119 (165)
                      .++   ..++||+|++++..+..+   +.+.+.|||||++++.
T Consensus       127 ~l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~  169 (248)
T 3tfw_A          127 SLESLGECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGD  169 (248)
T ss_dssp             HHHTCCSCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred             HHHhcCCCCCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEe
Confidence            322   235899999998766554   4678999999999875

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.67  E-value=4.2e-17  Score=124.79  Aligned_cols=110  Identities=14%  Similarity=0.049  Sum_probs=88.9

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc---CCcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF---IPNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRA   82 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~   82 (165)
                      ++...++++..+....++.+|||| ||+|+.+..+++.   .++|+++|+++++++.|+  ++..+..+ ++++.+|+.+
T Consensus        42 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  121 (223)
T 3duw_A           42 VSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALD  121 (223)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            356677777777555678999999 9999999999998   469999999999999996  66677765 9999999865


Q ss_pred             CCCC-----CCCccEEEEcCCCCCch---HHHHhccccCcEEEEE
Q psy8015          83 SFGD-----NGPYDAIHVGAAYPRYP---EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        83 ~~~~-----~~~fD~I~i~~~~~~~p---~~l~~~LkpgG~lvi~  119 (165)
                      .++.     .++||+||+++..+..+   +.+.+.|||||++++.
T Consensus       122 ~~~~~~~~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~  166 (223)
T 3duw_A          122 SLQQIENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGD  166 (223)
T ss_dssp             HHHHHHHTTCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred             HHHHHHhcCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEe
Confidence            3322     15799999998766554   4678999999988874

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.67  E-value=3.5e-16  Score=121.61  Aligned_cols=111  Identities=13%  Similarity=0.072  Sum_probs=91.9

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC-cEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASF   84 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~   84 (165)
                      -+....++++.+....++.+|||+ ||+|..+..+++..+ +|+++|+++.+++.|+  .+..++.+ ++++.+|+....
T Consensus        30 ~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  109 (257)
T 3f4k_A           30 SPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP  109 (257)
T ss_dssp             CHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS
T ss_pred             CHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC
Confidence            345667777777555788999999 999999999999875 9999999999999996  55667765 999999996543


Q ss_pred             CCCCCccEEEEcCCCCCch-----HHHHhccccCcEEEEEe
Q psy8015          85 GDNGPYDAIHVGAAYPRYP-----EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        85 ~~~~~fD~I~i~~~~~~~p-----~~l~~~LkpgG~lvi~~  120 (165)
                      .+.++||+|++....+++.     ..+.+.|||||++++..
T Consensus       110 ~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          110 FQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             SCTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CCCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEE
Confidence            3457999999998887753     36789999999999976

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.67  E-value=6.7e-16  Score=122.15  Aligned_cols=105  Identities=11%  Similarity=0.035  Sum_probs=84.6

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGP   89 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~   89 (165)
                      |.....++....  ..+.+|||| ||+|..+..|++...+|+++|+|++|++.|+.    ..|++++++|+.+...++++
T Consensus        26 p~~l~~~l~~~~--~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~----~~~v~~~~~~~e~~~~~~~s   99 (257)
T 4hg2_A           26 PRALFRWLGEVA--PARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR----HPRVTYAVAPAEDTGLPPAS   99 (257)
T ss_dssp             CHHHHHHHHHHS--SCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC----CTTEEEEECCTTCCCCCSSC
T ss_pred             HHHHHHHHHHhc--CCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh----cCCceeehhhhhhhcccCCc
Confidence            344434444332  356899999 99999999999999999999999999998862    35899999999775445689


Q ss_pred             ccEEEEcCCCCCch-----HHHHhccccCcEEEEEec
Q psy8015          90 YDAIHVGAAYPRYP-----EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        90 fD~I~i~~~~~~~p-----~~l~~~LkpgG~lvi~~~  121 (165)
                      ||+|++..+.+.++     .++.+.|||||+|++...
T Consensus       100 fD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~~  136 (257)
T 4hg2_A          100 VDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVTY  136 (257)
T ss_dssp             EEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEEC
Confidence            99999999888654     367899999999988654

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.66  E-value=3.6e-16  Score=126.13  Aligned_cols=103  Identities=8%  Similarity=-0.036  Sum_probs=82.9

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHH-HHHhcc-CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCc
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQS-TTLPTF-IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPY   90 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t-~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~f   90 (165)
                      +-.+++ .++++++|||| ||+|.+| ..+|+. ..+|+++|+|++|++.||  +++.|++|++++++|+.+ ++ .++|
T Consensus       113 ~E~~la-~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~-d~~F  189 (298)
T 3fpf_A          113 NEAALG-RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-ID-GLEF  189 (298)
T ss_dssp             HHHHHT-TCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GG-GCCC
T ss_pred             HHHHHc-CCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CC-CCCc
Confidence            333443 56899999999 9998766 556664 569999999999999997  556677889999999976 34 5789


Q ss_pred             cEEEEcCCCC---CchHHHHhccccCcEEEEEec
Q psy8015          91 DAIHVGAAYP---RYPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        91 D~I~i~~~~~---~~p~~l~~~LkpgG~lvi~~~  121 (165)
                      |+|++.+..+   .+.+++.++|||||++++...
T Consensus       190 DvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          190 DVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             SEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            9999987765   345688999999999999764

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.66  E-value=4.1e-16  Score=121.18  Aligned_cols=110  Identities=15%  Similarity=0.051  Sum_probs=90.1

Q ss_pred             CchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCC
Q psy8015           9 SVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRAS   83 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~   83 (165)
                      .-+.....+++.+. ..++.+|||| ||+|.++..+++.. .+|+++|+++++++.|+  .+..++. |++++.+|+.+.
T Consensus        20 ~~~~~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~   98 (256)
T 1nkv_A           20 FTEEKYATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY   98 (256)
T ss_dssp             CCHHHHHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred             CCHHHHHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhC
Confidence            34556777777774 5789999999 99999999999875 59999999999999996  5556664 799999999764


Q ss_pred             CCCCCCccEEEEcCCCCCch------HHHHhccccCcEEEEEe
Q psy8015          84 FGDNGPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        84 ~~~~~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~  120 (165)
                      .. .++||+|++....++++      .++.+.|||||++++..
T Consensus        99 ~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A           99 VA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             CC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             Cc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence            44 67899999987776553      46789999999999964

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.66  E-value=3.7e-16  Score=123.20  Aligned_cols=107  Identities=7%  Similarity=-0.048  Sum_probs=82.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhccccc-C------------------CCCC
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSST-I------------------DPDH   72 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~-~------------------~~~n   72 (165)
                      ...+++..+....++.+|||+ ||+|..+..||+.+.+|+++|+|+.|++.|+.+. .                  ...+
T Consensus        55 ~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (252)
T 2gb4_A           55 LLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGS  134 (252)
T ss_dssp             HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred             HHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCc
Confidence            344444443323578999999 9999999999998889999999999999996221 1                  2358


Q ss_pred             eEEEEccCCCCCCC-CCCccEEEEcCCCCCchH--------HHHhccccCcEEEEE
Q psy8015          73 DYDLIADGRASFGD-NGPYDAIHVGAAYPRYPE--------IFIHHLKSGGRLVIP  119 (165)
Q Consensus        73 V~~~~gD~~~~~~~-~~~fD~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~  119 (165)
                      ++++++|+.+..+. .++||+|+..+....+++        ++.+.|||||++++.
T Consensus       135 i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          135 ISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             EEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            99999999764333 378999999888776642        478999999999643

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.66  E-value=1.1e-16  Score=125.62  Aligned_cols=110  Identities=14%  Similarity=0.080  Sum_probs=88.4

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc---CCcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF---IPNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRA   82 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~   82 (165)
                      ++...++++..+....++++|||| ||+|+.+.++++.   .++|+++|+++++++.|+  +++.|+. +++++.+|+.+
T Consensus        63 ~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~  142 (247)
T 1sui_A           63 TSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP  142 (247)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHH
Confidence            445666777766555678999999 9999999999987   469999999999999996  5666774 69999999865


Q ss_pred             CCCC-------CCCccEEEEcCCCCCch---HHHHhccccCcEEEEE
Q psy8015          83 SFGD-------NGPYDAIHVGAAYPRYP---EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        83 ~~~~-------~~~fD~I~i~~~~~~~p---~~l~~~LkpgG~lvi~  119 (165)
                      .++.       .++||+||+++....++   +.+.+.|||||++++.
T Consensus       143 ~l~~l~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          143 VLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             HHHHHHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             HHHHHHhccCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEe
Confidence            3321       36899999998776554   4678999999999874

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.65  E-value=2.7e-17  Score=128.77  Aligned_cols=110  Identities=12%  Similarity=0.126  Sum_probs=89.8

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRA   82 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~   82 (165)
                      ++...++++..+....++++|||| ||+|+.|..+|+..   ++|+++|+++++++.|+  ++..|+. +|+++.+|+.+
T Consensus        44 i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~  123 (242)
T 3r3h_A           44 VAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALD  123 (242)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            556677777777655678999999 99999999999864   58999999999999996  6667775 79999999865


Q ss_pred             CCCC------CCCccEEEEcCCCCCch---HHHHhccccCcEEEEE
Q psy8015          83 SFGD------NGPYDAIHVGAAYPRYP---EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        83 ~~~~------~~~fD~I~i~~~~~~~p---~~l~~~LkpgG~lvi~  119 (165)
                      .++.      .++||+||+++.....+   +.+.+.|||||++++.
T Consensus       124 ~l~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          124 TLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAID  169 (242)
T ss_dssp             HHHHHHHHHCSSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHhhccCCCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEEE
Confidence            4332      37899999998766544   4678999999999984

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.65  E-value=1.2e-15  Score=115.40  Aligned_cols=107  Identities=12%  Similarity=0.009  Sum_probs=90.7

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDA   92 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~   92 (165)
                      ..++++.+....++.+|||+ ||+|.++..+++...+|+++|+++++++.|+.  .+..|++++.+|+.+. ...++||+
T Consensus        34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~--~~~~~~~~~~~d~~~~-~~~~~~D~  110 (218)
T 3ou2_A           34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR--HGLDNVEFRQQDLFDW-TPDRQWDA  110 (218)
T ss_dssp             HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG--GCCTTEEEEECCTTSC-CCSSCEEE
T ss_pred             HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh--cCCCCeEEEecccccC-CCCCceeE
Confidence            45677777656788999999 99999999999988899999999999999975  4567899999999765 45689999


Q ss_pred             EEEcCCCCCchH--------HHHhccccCcEEEEEecCC
Q psy8015          93 IHVGAAYPRYPE--------IFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        93 I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~~~~  123 (165)
                      |++....+++++        ++.+.|||||++++.....
T Consensus       111 v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  149 (218)
T 3ou2_A          111 VFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD  149 (218)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             EEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            999998887664        4679999999999986543

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.65  E-value=7e-16  Score=118.51  Aligned_cols=107  Identities=12%  Similarity=0.027  Sum_probs=88.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCcc
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYD   91 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD   91 (165)
                      ....+++.+....++.+|||| ||+|.++..+++...+|+++|+++++++.|+.+...  +++++.+|+.+. .+.++||
T Consensus        29 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~--~v~~~~~d~~~~-~~~~~fD  105 (250)
T 2p7i_A           29 MHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD--GITYIHSRFEDA-QLPRRYD  105 (250)
T ss_dssp             HHHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS--CEEEEESCGGGC-CCSSCEE
T ss_pred             HHHHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC--CeEEEEccHHHc-CcCCccc
Confidence            345677777655678999999 999999999999888999999999999999732211  899999998765 4467899


Q ss_pred             EEEEcCCCCCch------HHHH-hccccCcEEEEEecC
Q psy8015          92 AIHVGAAYPRYP------EIFI-HHLKSGGRLVIPIGD  122 (165)
Q Consensus        92 ~I~i~~~~~~~p------~~l~-~~LkpgG~lvi~~~~  122 (165)
                      +|++....++++      .++. +.|||||++++....
T Consensus       106 ~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~  143 (250)
T 2p7i_A          106 NIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPN  143 (250)
T ss_dssp             EEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             EEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            999999887765      3578 999999999998754

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.65  E-value=8.4e-16  Score=119.82  Aligned_cols=105  Identities=13%  Similarity=0.014  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc------CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF------IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS   83 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~------~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~   83 (165)
                      +.....+.+++.. .++++|||| ||+|+.|..|++.      .++|+++|++++|++.|+  .. .+||+++++|+.+.
T Consensus        67 p~~~~~l~~~l~~-~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~--~~-~~~v~~~~gD~~~~  142 (236)
T 2bm8_A           67 PDTQAVYHDMLWE-LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA--SD-MENITLHQGDCSDL  142 (236)
T ss_dssp             HHHHHHHHHHHHH-HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG--GG-CTTEEEEECCSSCS
T ss_pred             HHHHHHHHHHHHh-cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh--cc-CCceEEEECcchhH
Confidence            5556666666643 467899999 9999999999987      479999999999999887  22 25899999999764


Q ss_pred             --CC--CCCCccEEEEcCCCCCchH---HHHh-ccccCcEEEEE
Q psy8015          84 --FG--DNGPYDAIHVGAAYPRYPE---IFIH-HLKSGGRLVIP  119 (165)
Q Consensus        84 --~~--~~~~fD~I~i~~~~~~~p~---~l~~-~LkpgG~lvi~  119 (165)
                        ++  ...+||+|+++++..+++.   ++.+ +|||||++++.
T Consensus       143 ~~l~~~~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~  186 (236)
T 2bm8_A          143 TTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIE  186 (236)
T ss_dssp             GGGGGGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEEC
T ss_pred             HHHHhhccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEE
Confidence              22  2347999999887544443   4554 99999999993

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.64  E-value=7.9e-16  Score=117.93  Aligned_cols=107  Identities=7%  Similarity=-0.041  Sum_probs=85.2

Q ss_pred             CchHHHHHHHHHHhcCCCCCeEEEEccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCCC---CCeEEEEccCCC
Q psy8015           9 SVSGAVAKYVTYLSGHSKRLDCLALTSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTIDP---DHDYDLIADGRA   82 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLei~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~---~nV~~~~gD~~~   82 (165)
                      .++...++++....  .+.++|||+ ||||.|.++|+. .++|+++|.|++.++.|+  +++.|.   +||+++.||+.+
T Consensus        15 ~v~~~~~~~L~~~l--~~a~~VLEi-GtGySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~   91 (202)
T 3cvo_A           15 TMPPAEAEALRMAY--EEAEVILEY-GSGGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGP   91 (202)
T ss_dssp             CSCHHHHHHHHHHH--HHCSEEEEE-SCSHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSS
T ss_pred             cCCHHHHHHHHHHh--hCCCEEEEE-CchHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchh
Confidence            36677888888753  578999999 558999999997 589999999999999997  777774   579999999754


Q ss_pred             C--------------CC----------CCCCccEEEEcCCCC-CchHHHHhccccCcEEEE
Q psy8015          83 S--------------FG----------DNGPYDAIHVGAAYP-RYPEIFIHHLKSGGRLVI  118 (165)
Q Consensus        83 ~--------------~~----------~~~~fD~I~i~~~~~-~~p~~l~~~LkpgG~lvi  118 (165)
                      .              ++          ..++||+||+++... ...+...++|+|||++++
T Consensus        92 ~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~~~~~~~~l~~l~~GG~Iv~  152 (202)
T 3cvo_A           92 TGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFRVGCALATAFSITRPVTLLF  152 (202)
T ss_dssp             BCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSHHHHHHHHHHHCSSCEEEEE
T ss_pred             hhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCchhHHHHHHHhcCCCeEEEE
Confidence            3              21          237899999999754 222345699999999966

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.64  E-value=4.5e-16  Score=116.45  Aligned_cols=112  Identities=8%  Similarity=-0.022  Sum_probs=86.4

Q ss_pred             hHHHHHHHHHHhcC--CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC
Q psy8015          11 SGAVAKYVTYLSGH--SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF   84 (165)
Q Consensus        11 ~~~~~~~l~~l~~~--~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~   84 (165)
                      +.....+++++...  .++.+|||+ ||+|.++..++... .+|+++|+|+++++.|+  ++..+.+|++++++|+.+..
T Consensus        27 ~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  106 (189)
T 3p9n_A           27 DRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVV  106 (189)
T ss_dssp             HHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHH
Confidence            44555666666432  578999999 99999999766654 58999999999999996  55566778999999986532


Q ss_pred             C--CCCCccEEEEcCCCCCc-h------HHHHh--ccccCcEEEEEecC
Q psy8015          85 G--DNGPYDAIHVGAAYPRY-P------EIFIH--HLKSGGRLVIPIGD  122 (165)
Q Consensus        85 ~--~~~~fD~I~i~~~~~~~-p------~~l~~--~LkpgG~lvi~~~~  122 (165)
                      +  +.++||+|+++...+.. +      +.+.+  .|+|||++++....
T Consensus       107 ~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          107 AAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             HHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             hhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence            1  24789999999877653 1      24566  89999999998754

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.64  E-value=8.5e-17  Score=123.12  Aligned_cols=110  Identities=11%  Similarity=0.047  Sum_probs=88.2

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc---CCcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF---IPNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRA   82 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~   82 (165)
                      ++...+.++..+....++.+|||+ ||+|+.+..+++.   ..+|+++|+++++++.|+  ++..+..+ ++++++|+.+
T Consensus        48 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  127 (225)
T 3tr6_A           48 TAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKD  127 (225)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHH
Confidence            455667777777555678999999 9999999999987   569999999999999996  66667765 9999999855


Q ss_pred             CCCC------CCCccEEEEcCCCCCch---HHHHhccccCcEEEEE
Q psy8015          83 SFGD------NGPYDAIHVGAAYPRYP---EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        83 ~~~~------~~~fD~I~i~~~~~~~p---~~l~~~LkpgG~lvi~  119 (165)
                      .++.      .++||+|+++......+   +.+.+.|||||++++.
T Consensus       128 ~~~~~~~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~  173 (225)
T 3tr6_A          128 TLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVD  173 (225)
T ss_dssp             HHHHHHTTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHhhhccCCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence            3321      16899999988765444   5678999999999884

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.64  E-value=1.5e-15  Score=120.32  Aligned_cols=94  Identities=12%  Similarity=-0.008  Sum_probs=78.4

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC----CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCCCCccEEEEc
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI----PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDNGPYDAIHVG   96 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~----~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~~~fD~I~i~   96 (165)
                      +|+.+|||+ ||+|..+..|++..    .+|+++|+|++|++.||  ++..+. .||+++++|+.+. + .++||+|++.
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~-~-~~~~d~v~~~  146 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-A-IENASMVVLN  146 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC-C-CCSEEEEEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc-c-ccccccceee
Confidence            689999999 99999999999865    27999999999999996  455554 4799999998753 3 3579999999


Q ss_pred             CCCCCchH--------HHHhccccCcEEEEEe
Q psy8015          97 AAYPRYPE--------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        97 ~~~~~~p~--------~l~~~LkpgG~lvi~~  120 (165)
                      ...+++++        ++.+.|||||++++..
T Consensus       147 ~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e  178 (261)
T 4gek_A          147 FTLQFLEPSERQALLDKIYQGLNPGGALVLSE  178 (261)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeeeecCchhHhHHHHHHHHHcCCCcEEEEEe
Confidence            88877652        5789999999999864

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.63  E-value=2.5e-16  Score=120.86  Aligned_cols=111  Identities=10%  Similarity=0.022  Sum_probs=85.8

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc---CCcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF---IPNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRA   82 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~   82 (165)
                      ++...++++..+....++++|||+ ||+|+.+..+++.   ..+|+++|+++++++.|+  ++..++. +++++.+|+.+
T Consensus        42 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  121 (221)
T 3u81_A           42 VGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQD  121 (221)
T ss_dssp             CCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHH
Confidence            344556666666554678999999 9999999999985   358999999999999996  5566765 59999999854


Q ss_pred             CCCC------CCCccEEEEcCCCCCchH--HHH---hccccCcEEEEEe
Q psy8015          83 SFGD------NGPYDAIHVGAAYPRYPE--IFI---HHLKSGGRLVIPI  120 (165)
Q Consensus        83 ~~~~------~~~fD~I~i~~~~~~~p~--~l~---~~LkpgG~lvi~~  120 (165)
                      .++.      .++||+||++...+++++  .+.   +.|||||++++.-
T Consensus       122 ~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~~LkpgG~lv~~~  170 (221)
T 3u81_A          122 LIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADN  170 (221)
T ss_dssp             HGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHTTCCCTTCEEEESC
T ss_pred             HHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhccccCCCeEEEEeC
Confidence            3221      158999999988776653  111   7999999998843

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.63  E-value=1.4e-15  Score=119.37  Aligned_cols=112  Identities=11%  Similarity=0.036  Sum_probs=90.7

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC-cEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASF   84 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~   84 (165)
                      ......++++.+....++.+|||| ||+|.++..+++... +|+++|+++.+++.|+  .+..+++ +++++.+|..+..
T Consensus        30 ~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  109 (267)
T 3kkz_A           30 SPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP  109 (267)
T ss_dssp             CHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC
T ss_pred             CHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC
Confidence            345566777777545789999999 999999999998864 9999999999999996  5566764 5999999997643


Q ss_pred             CCCCCccEEEEcCCCCCch-----HHHHhccccCcEEEEEec
Q psy8015          85 GDNGPYDAIHVGAAYPRYP-----EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        85 ~~~~~fD~I~i~~~~~~~p-----~~l~~~LkpgG~lvi~~~  121 (165)
                      .+.++||+|++....+++.     ..+.+.|||||++++...
T Consensus       110 ~~~~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  151 (267)
T 3kkz_A          110 FRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSEC  151 (267)
T ss_dssp             CCTTCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEe
Confidence            3457899999998876552     367899999999999753

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.63  E-value=1.3e-15  Score=115.75  Aligned_cols=105  Identities=15%  Similarity=0.055  Sum_probs=84.5

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEE
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAI   93 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I   93 (165)
                      ..++..+....++.+|||+ ||+|.++..+++...+|+++|+++++++.|+.+.....|++++.+|+.+.. ..++||+|
T Consensus        40 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v  118 (216)
T 3ofk_A           40 TQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLI  118 (216)
T ss_dssp             HHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEE
T ss_pred             HHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEE
Confidence            3444444344678999999 999999999999888999999999999999732223448999999997654 46899999


Q ss_pred             EEcCCCCCchH---------HHHhccccCcEEEEEe
Q psy8015          94 HVGAAYPRYPE---------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        94 ~i~~~~~~~p~---------~l~~~LkpgG~lvi~~  120 (165)
                      ++....+++++         .+.+.|||||++++..
T Consensus       119 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  154 (216)
T 3ofk_A          119 VVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS  154 (216)
T ss_dssp             EEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            99988876652         4679999999999864

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.62  E-value=3.5e-15  Score=113.63  Aligned_cols=108  Identities=11%  Similarity=-0.012  Sum_probs=84.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC-----CeEEEEccCCC
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD-----HDYDLIADGRA   82 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~-----nV~~~~gD~~~   82 (165)
                      ....+++.+.. .++.+|||+ ||+|.++..+++..  .+|+++|+|+++++.|+  ++..++.     +++++.+|+..
T Consensus        17 ~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~   95 (219)
T 3jwg_A           17 RLGTVVAVLKS-VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVY   95 (219)
T ss_dssp             HHHHHHHHHHH-TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSS
T ss_pred             HHHHHHHHHhh-cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccc
Confidence            34556666654 678999999 99999999999876  59999999999999996  4433443     89999999855


Q ss_pred             CCCCCCCccEEEEcCCCCCchH--------HHHhccccCcEEEEEec
Q psy8015          83 SFGDNGPYDAIHVGAAYPRYPE--------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        83 ~~~~~~~fD~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~~  121 (165)
                      .....++||+|++....+++++        .+.+.|||||.++....
T Consensus        96 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  142 (219)
T 3jwg_A           96 RDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPN  142 (219)
T ss_dssp             CCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             cccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccc
Confidence            4333578999999988887763        36799999997666543

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.62  E-value=1.8e-15  Score=118.38  Aligned_cols=97  Identities=14%  Similarity=0.170  Sum_probs=78.5

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC---CCCCCccEEEEc
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF---GDNGPYDAIHVG   96 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~---~~~~~fD~I~i~   96 (165)
                      ++||++|||+ ||+|+++..+|+.+   ++|+|+|++++|++.++.+.....|+..+.+|+....   ...+.+|+||++
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d  154 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD  154 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence            4899999999 99999999999975   6899999999999998633334569999999986421   224689999998


Q ss_pred             CCCCCch----HHHHhccccCcEEEEEe
Q psy8015          97 AAYPRYP----EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        97 ~~~~~~p----~~l~~~LkpgG~lvi~~  120 (165)
                      ...+..+    .++.+.|||||++++.+
T Consensus       155 ~~~~~~~~~~l~~~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          155 VAQPEQAAIVVRNARFFLRDGGYMLMAI  182 (233)
T ss_dssp             CCCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCChhHHHHHHHHHHhccCCCEEEEEE
Confidence            7766543    35678999999999975

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.62  E-value=3.5e-15  Score=110.40  Aligned_cols=110  Identities=14%  Similarity=0.000  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCC--eEEEEccCCCCCCC
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDH--DYDLIADGRASFGD   86 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~n--V~~~~gD~~~~~~~   86 (165)
                      .....+++.+. ..++.+|||+ ||+|.++..+++...+|+++|+++++++.|+  .+..+.+|  ++++.+|..+..+ 
T Consensus        39 ~~~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-  116 (194)
T 1dus_A           39 KGTKILVENVV-VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK-  116 (194)
T ss_dssp             HHHHHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT-
T ss_pred             hHHHHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc-
Confidence            56777888874 4689999999 9999999999988789999999999999996  55567777  9999999877544 


Q ss_pred             CCCccEEEEcCCCCCc-------hHHHHhccccCcEEEEEecCC
Q psy8015          87 NGPYDAIHVGAAYPRY-------PEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        87 ~~~fD~I~i~~~~~~~-------p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      .++||+|+++...+..       .+.+.+.|+|||++++.....
T Consensus       117 ~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  160 (194)
T 1dus_A          117 DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            5689999998776542       235678999999999987653

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.62  E-value=4.9e-15  Score=112.78  Aligned_cols=107  Identities=11%  Similarity=-0.049  Sum_probs=85.0

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC-----CeEEEEccCCCC
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD-----HDYDLIADGRAS   83 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~-----nV~~~~gD~~~~   83 (165)
                      ...+++.+.. .++.+|||+ ||+|.++..+++..  .+|+++|+++++++.|+  ++..++.     |++++.+|+...
T Consensus        18 ~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~   96 (217)
T 3jwh_A           18 MNGVVAALKQ-SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ   96 (217)
T ss_dssp             HHHHHHHHHH-TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC
T ss_pred             HHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc
Confidence            4556666654 678999999 99999999999876  58999999999999996  4445554     799999998643


Q ss_pred             CCCCCCccEEEEcCCCCCchH--------HHHhccccCcEEEEEec
Q psy8015          84 FGDNGPYDAIHVGAAYPRYPE--------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        84 ~~~~~~fD~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~~  121 (165)
                      ....++||+|++....+++++        .+.+.|||||++++...
T Consensus        97 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  142 (217)
T 3jwh_A           97 DKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN  142 (217)
T ss_dssp             CGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             cccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence            333478999999988876653        46789999997776543

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.61  E-value=1.8e-15  Score=121.64  Aligned_cols=108  Identities=12%  Similarity=-0.027  Sum_probs=86.9

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCC
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNG   88 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~   88 (165)
                      ..++++.+....++.+|||+ ||+|.++..+++. ..+|+++|+++++++.|+  .+..++. |++++.+|+.+...+.+
T Consensus       105 ~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  184 (312)
T 3vc1_A          105 AEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKG  184 (312)
T ss_dssp             HHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTT
T ss_pred             HHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCC
Confidence            34455665434789999999 9999999999987 679999999999999996  5556765 79999999976433457


Q ss_pred             CccEEEEcCCCCCch-----HHHHhccccCcEEEEEec
Q psy8015          89 PYDAIHVGAAYPRYP-----EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        89 ~fD~I~i~~~~~~~p-----~~l~~~LkpgG~lvi~~~  121 (165)
                      +||+|++....++++     +++.+.|||||++++...
T Consensus       185 ~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~  222 (312)
T 3vc1_A          185 AVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITG  222 (312)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CEeEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            999999987766543     367899999999998653

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.61  E-value=3e-16  Score=122.19  Aligned_cols=110  Identities=14%  Similarity=0.073  Sum_probs=88.5

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc---CCcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF---IPNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRA   82 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~   82 (165)
                      ++...++++..+....++++|||| ||+|+.+.++++.   .++|+++|+++++++.|+  +++.|.. +++++.+|+.+
T Consensus        54 ~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~  133 (237)
T 3c3y_A           54 TSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAML  133 (237)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            445667777776555678999999 9999999999987   469999999999999996  5667775 59999999865


Q ss_pred             CCC-------CCCCccEEEEcCCCCCch---HHHHhccccCcEEEEE
Q psy8015          83 SFG-------DNGPYDAIHVGAAYPRYP---EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        83 ~~~-------~~~~fD~I~i~~~~~~~p---~~l~~~LkpgG~lvi~  119 (165)
                      .++       +.++||+||+++....++   +.+.+.|+|||++++.
T Consensus       134 ~l~~l~~~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d  180 (237)
T 3c3y_A          134 ALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYD  180 (237)
T ss_dssp             HHHHHHHSTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHhccCCCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEe
Confidence            322       136899999998766544   4678999999999884

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.61  E-value=1.5e-15  Score=118.76  Aligned_cols=111  Identities=17%  Similarity=0.158  Sum_probs=84.7

Q ss_pred             CchHHHHHHHHHHhc--CCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccC
Q psy8015           9 SVSGAVAKYVTYLSG--HSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADG   80 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~--~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~   80 (165)
                      .++...++++..|..  ++|+++|||+ ||+|+.|..+|+.+   ++|+|+|+++.|++...  .++  ..|++++.+|+
T Consensus        57 ~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~--r~nv~~i~~Da  134 (232)
T 3id6_C           57 FRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR--RPNIFPLLADA  134 (232)
T ss_dssp             TTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH--CTTEEEEECCT
T ss_pred             HHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--cCCeEEEEccc
Confidence            467777888887742  4789999999 99999999999875   49999999998865432  121  26899999998


Q ss_pred             CCCCC---CCCCccEEEEcCCCCCchH----HHHhccccCcEEEEEec
Q psy8015          81 RASFG---DNGPYDAIHVGAAYPRYPE----IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        81 ~~~~~---~~~~fD~I~i~~~~~~~p~----~l~~~LkpgG~lvi~~~  121 (165)
                      .....   ..++||+|+++.+.+..++    .+.+.|||||++++.+.
T Consensus       135 ~~~~~~~~~~~~~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvisik  182 (232)
T 3id6_C          135 RFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIK  182 (232)
T ss_dssp             TCGGGTTTTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccchhhhccccceEEEEecCCChhHHHHHHHHHHHhCCCCeEEEEEEc
Confidence            75321   1368999999988765443    23458999999999863

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.61  E-value=2.3e-15  Score=117.07  Aligned_cols=109  Identities=12%  Similarity=0.004  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCC
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGP   89 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~   89 (165)
                      .....+++.+. ..++.+|||+ ||+|.++..+++. ..+|+++|+|+++++.|+.+.....+++++.+|+.+...+.++
T Consensus        42 ~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~  120 (266)
T 3ujc_A           42 EATKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENN  120 (266)
T ss_dssp             HHHHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTC
T ss_pred             HHHHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCc
Confidence            34455666553 4688999999 9999999999986 6799999999999999972221227899999999764334679


Q ss_pred             ccEEEEcCCCCCc--h------HHHHhccccCcEEEEEec
Q psy8015          90 YDAIHVGAAYPRY--P------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        90 fD~I~i~~~~~~~--p------~~l~~~LkpgG~lvi~~~  121 (165)
                      ||+|++....+++  +      .++.+.|||||++++...
T Consensus       121 fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  160 (266)
T 3ujc_A          121 FDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY  160 (266)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            9999999988887  3      357899999999999753

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.61  E-value=1.2e-15  Score=116.00  Aligned_cols=106  Identities=12%  Similarity=0.039  Sum_probs=88.3

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCC
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDN   87 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~   87 (165)
                      ..++++.+. ..++.+|||+ ||+|.++..+++..   .+|+++|+++++++.|+  ++..+.+|++++.+|+.+...+.
T Consensus        26 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~  104 (219)
T 3dh0_A           26 PEKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD  104 (219)
T ss_dssp             HHHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred             HHHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence            356777774 4789999999 99999999999876   69999999999999996  55567779999999987643345


Q ss_pred             CCccEEEEcCCCCCch------HHHHhccccCcEEEEEe
Q psy8015          88 GPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        88 ~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~  120 (165)
                      ++||+|++....++++      +++.+.|||||++++..
T Consensus       105 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~  143 (219)
T 3dh0_A          105 NTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIID  143 (219)
T ss_dssp             SCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEE
Confidence            7899999998877654      36789999999999975

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.61  E-value=4.1e-15  Score=114.19  Aligned_cols=108  Identities=13%  Similarity=-0.061  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCC
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNG   88 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~   88 (165)
                      .....+++++....++.+|||+ ||+|.++..+++.  ..+|+++|+++++++.|+.+.....+++++.+|..+...+ +
T Consensus        30 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~  108 (234)
T 3dtn_A           30 DFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-E  108 (234)
T ss_dssp             HHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-S
T ss_pred             HHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-C
Confidence            3345555555434678999999 9999999999998  4699999999999999972222223899999998764443 7


Q ss_pred             CccEEEEcCCCCCchH--------HHHhccccCcEEEEEe
Q psy8015          89 PYDAIHVGAAYPRYPE--------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        89 ~fD~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~  120 (165)
                      +||+|++....+++++        ++.+.|||||++++..
T Consensus       109 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A          109 KYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINAD  148 (234)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            9999999988876653        4678999999999865

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.60  E-value=2.5e-16  Score=122.17  Aligned_cols=107  Identities=13%  Similarity=0.122  Sum_probs=84.6

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc---CCcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCCC
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF---IPNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFGD   86 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~~   86 (165)
                      .+.++..+....++++|||| ||+|+.+..+++.   ..+|+++|+++++++.|+  ++..+..+ ++++.+|+.+.++.
T Consensus        48 ~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~  127 (239)
T 2hnk_A           48 EGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQV  127 (239)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHH
Confidence            33444444334678999999 9999999999987   469999999999999996  55667765 99999997543221


Q ss_pred             ----------------C-CCccEEEEcCCCCCch---HHHHhccccCcEEEEEe
Q psy8015          87 ----------------N-GPYDAIHVGAAYPRYP---EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        87 ----------------~-~~fD~I~i~~~~~~~p---~~l~~~LkpgG~lvi~~  120 (165)
                                      . ++||+|+++...+.++   +.+.+.|+|||++++..
T Consensus       128 ~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          128 LIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             HHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHhhcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence                            2 6899999998776665   67889999999999864

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.60  E-value=3.3e-15  Score=114.57  Aligned_cols=96  Identities=15%  Similarity=0.113  Sum_probs=78.1

Q ss_pred             CCCCCeEEEE-cc-ccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCC--CCCCCCCccEEEEc
Q psy8015          24 HSKRLDCLAL-TS-NTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRA--SFGDNGPYDAIHVG   96 (165)
Q Consensus        24 ~~~~~~vLei-~G-sG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~--~~~~~~~fD~I~i~   96 (165)
                      ..++.+|||+ || +|.++..+++. ..+|+++|+++++++.|+  ++..+. |++++++|+..  .++ .++||+|+++
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~-~~~fD~I~~n  130 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKGVV-EGTFDVIFSA  130 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTTTC-CSCEEEEEEC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhhcc-cCceeEEEEC
Confidence            3689999999 99 99999999998 789999999999999996  555666 89999999642  333 3789999998


Q ss_pred             CCCCC-------------------------chHHHHhccccCcEEEEEec
Q psy8015          97 AAYPR-------------------------YPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        97 ~~~~~-------------------------~p~~l~~~LkpgG~lvi~~~  121 (165)
                      .....                         +.+.+.+.|||||++++.+.
T Consensus       131 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (230)
T 3evz_A          131 PPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLP  180 (230)
T ss_dssp             CCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             CCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEec
Confidence            55421                         22456789999999999664

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.60  E-value=1.8e-15  Score=116.03  Aligned_cols=95  Identities=16%  Similarity=0.061  Sum_probs=74.3

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC---CCCCCCccEEEE
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS---FGDNGPYDAIHV   95 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~---~~~~~~fD~I~i   95 (165)
                      ..++++|||+ ||+|+.+..+++.+  ++|+++|+|++|++.+.  .++  ..|+.++.+|+...   .+..++||+|++
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~--~~~v~~~~~d~~~~~~~~~~~~~fD~V~~  132 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE--RNNIIPLLFDASKPWKYSGIVEKVDLIYQ  132 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH--CSSEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc--CCCeEEEEcCCCCchhhcccccceeEEEE
Confidence            3689999999 99999999999876  78999999999876442  222  35899999998653   222378999999


Q ss_pred             cCCCCCc----hHHHHhccccCcEEEEEe
Q psy8015          96 GAAYPRY----PEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        96 ~~~~~~~----p~~l~~~LkpgG~lvi~~  120 (165)
                      +...+..    ..++.+.|||||++++.+
T Consensus       133 ~~~~~~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          133 DIAQKNQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             CCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eccChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence            8654432    246789999999999986

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.60  E-value=8.3e-16  Score=116.79  Aligned_cols=109  Identities=9%  Similarity=-0.098  Sum_probs=84.9

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRA   82 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~   82 (165)
                      ++...+.++..+....++.+|||+ ||+|+.+..+++..   ++|+++|+++++++.|+  ++..+.. +++++.+|+.+
T Consensus        40 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  119 (210)
T 3c3p_A           40 VDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLG  119 (210)
T ss_dssp             CCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHH
Confidence            444556666665444577899999 99999999999874   59999999999999996  4555654 59999999865


Q ss_pred             CCCC-CCCccEEEEcCCCCCch---HHHHhccccCcEEEEE
Q psy8015          83 SFGD-NGPYDAIHVGAAYPRYP---EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        83 ~~~~-~~~fD~I~i~~~~~~~p---~~l~~~LkpgG~lvi~  119 (165)
                      .++. .+ ||+|+++......+   +.+.+.|||||++++.
T Consensus       120 ~~~~~~~-fD~v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          120 IAAGQRD-IDILFMDCDVFNGADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             HHTTCCS-EEEEEEETTTSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             HhccCCC-CCEEEEcCChhhhHHHHHHHHHhcCCCeEEEEE
Confidence            3222 35 99999997766554   4678999999999873

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.60  E-value=4.4e-15  Score=115.63  Aligned_cols=110  Identities=15%  Similarity=0.002  Sum_probs=90.4

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc---CCcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF---IPNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRAS   83 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~   83 (165)
                      +...+.++..+. ..++.+|||+ ||+|.++..+++.   ..+|+++|+++++++.|+  ++..+.+| ++++.+|+.+.
T Consensus        79 ~~~~~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  157 (255)
T 3mb5_A           79 PKDAALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG  157 (255)
T ss_dssp             HHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC
T ss_pred             HhHHHHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc
Confidence            345556667664 5789999999 9999999999988   579999999999999996  55667776 99999999876


Q ss_pred             CCCCCCccEEEEcCCCC-CchHHHHhccccCcEEEEEecC
Q psy8015          84 FGDNGPYDAIHVGAAYP-RYPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        84 ~~~~~~fD~I~i~~~~~-~~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      ++ .++||+|+++...+ ...+.+.+.|+|||++++....
T Consensus       158 ~~-~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  196 (255)
T 3mb5_A          158 IE-EENVDHVILDLPQPERVVEHAAKALKPGGFFVAYTPC  196 (255)
T ss_dssp             CC-CCSEEEEEECSSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             cC-CCCcCEEEECCCCHHHHHHHHHHHcCCCCEEEEEECC
Confidence            54 46799999976554 3567889999999999998753

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.59  E-value=1.3e-15  Score=115.71  Aligned_cols=113  Identities=8%  Similarity=0.083  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCCC--CCeEEEEccCCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTIDP--DHDYDLIADGRASF   84 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~--~nV~~~~gD~~~~~   84 (165)
                      +.....+++++....++.+|||+ ||+|.++..++.. ..+|+++|+|++|++.|+  ++..++  +|++++.+|+.+..
T Consensus        38 ~~~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~  117 (201)
T 2ift_A           38 DRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL  117 (201)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHH
Confidence            34455666666432268999999 9999999975554 468999999999999996  556677  68999999986543


Q ss_pred             CC--CCC-ccEEEEcCCCCC--ch---HHH--HhccccCcEEEEEecCC
Q psy8015          85 GD--NGP-YDAIHVGAAYPR--YP---EIF--IHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        85 ~~--~~~-fD~I~i~~~~~~--~p---~~l--~~~LkpgG~lvi~~~~~  123 (165)
                      +.  .++ ||+|+++..+..  .+   +.+  .+.|+|||++++.....
T Consensus       118 ~~~~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          118 KQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             TSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             HhhccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            32  468 999999877431  12   234  34699999999987654

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.59  E-value=7.6e-15  Score=117.29  Aligned_cols=103  Identities=12%  Similarity=0.054  Sum_probs=84.6

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCC
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGP   89 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~   89 (165)
                      ..+++.+. ..++.+|||| ||+|.++..+++. ..+|+++|+|+++++.|+  .+..++. +++++.+|..+.   .++
T Consensus        62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~  137 (302)
T 3hem_A           62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEP  137 (302)
T ss_dssp             HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCC
T ss_pred             HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCC
Confidence            34455442 3789999999 9999999999987 679999999999999996  5556765 799999998654   578


Q ss_pred             ccEEEEcCCCCCch---------------HHHHhccccCcEEEEEec
Q psy8015          90 YDAIHVGAAYPRYP---------------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        90 fD~I~i~~~~~~~p---------------~~l~~~LkpgG~lvi~~~  121 (165)
                      ||+|++....+++|               +++.+.|||||++++...
T Consensus       138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  184 (302)
T 3hem_A          138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI  184 (302)
T ss_dssp             CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred             ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence            99999998877662               357899999999999654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.59  E-value=6.2e-15  Score=108.93  Aligned_cols=111  Identities=13%  Similarity=0.061  Sum_probs=89.9

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFG   85 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~   85 (165)
                      .......+++.+. ..++.+|||+ ||+|.++..+++...+|+++|+++++++.|+  ++..+. ++++++.+|..+.++
T Consensus        18 ~~~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   96 (192)
T 1l3i_A           18 AMEVRCLIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC   96 (192)
T ss_dssp             CHHHHHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT
T ss_pred             hHHHHHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcc
Confidence            3455566666664 5789999999 9999999999988899999999999999996  555666 689999999866444


Q ss_pred             CCCCccEEEEcCCCCCch---HHHHhccccCcEEEEEec
Q psy8015          86 DNGPYDAIHVGAAYPRYP---EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        86 ~~~~fD~I~i~~~~~~~p---~~l~~~LkpgG~lvi~~~  121 (165)
                      ..++||+|+++...+++.   +.+.+.|+|||++++...
T Consensus        97 ~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~  135 (192)
T 1l3i_A           97 KIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI  135 (192)
T ss_dssp             TSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cCCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            435899999988766544   467899999999999754

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.59  E-value=1.1e-14  Score=112.02  Aligned_cols=105  Identities=7%  Similarity=-0.029  Sum_probs=85.7

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC-C-C
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG-D-N   87 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~-~-~   87 (165)
                      ......++..+.  .++.+|||+ ||+|+++..+++...+|+++|+++.+++.|+.+   ..|++++++|+.+.++ + .
T Consensus        35 ~~l~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~d~~~~~~~~~~  109 (226)
T 3m33_A           35 ELTFDLWLSRLL--TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN---APHADVYEWNGKGELPAGLG  109 (226)
T ss_dssp             THHHHHHHHHHC--CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH---CTTSEEEECCSCSSCCTTCC
T ss_pred             HHHHHHHHHhcC--CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh---CCCceEEEcchhhccCCcCC
Confidence            345555555542  678999999 999999999999888999999999999999744   4589999999965443 2 4


Q ss_pred             CCccEEEEcCCCCCchHHHHhccccCcEEEEEe
Q psy8015          88 GPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        88 ~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~  120 (165)
                      ++||+|++......+..++.+.|||||+++...
T Consensus       110 ~~fD~v~~~~~~~~~l~~~~~~LkpgG~l~~~~  142 (226)
T 3m33_A          110 APFGLIVSRRGPTSVILRLPELAAPDAHFLYVG  142 (226)
T ss_dssp             CCEEEEEEESCCSGGGGGHHHHEEEEEEEEEEE
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHcCCCcEEEEeC
Confidence            789999998666677788999999999999443

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.59  E-value=3.1e-15  Score=117.66  Aligned_cols=97  Identities=14%  Similarity=0.038  Sum_probs=83.0

Q ss_pred             CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      .++.+|||| ||+|.++..+++.  ..+|+++|+++.+++.|+  ++..+.+|++++.+|+.+...+.++||+|++....
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  115 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVL  115 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechh
Confidence            688999999 9999999999988  468999999999999996  55667789999999997644456799999999887


Q ss_pred             CCch------HHHHhccccCcEEEEEec
Q psy8015         100 PRYP------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       100 ~~~p------~~l~~~LkpgG~lvi~~~  121 (165)
                      ++++      ..+.+.|||||++++...
T Consensus       116 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~  143 (276)
T 3mgg_A          116 EHLQSPEEALKSLKKVLKPGGTITVIEG  143 (276)
T ss_dssp             GGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhcCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            7654      357899999999999764

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.59  E-value=9.1e-15  Score=114.66  Aligned_cols=106  Identities=14%  Similarity=0.081  Sum_probs=85.6

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCC
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNG   88 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~   88 (165)
                      ...+++.+. ..++.+|||| ||+|.++..+++. ..+|+++|+|+++++.|+  .+..++. +++++.+|+.+...+.+
T Consensus        50 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  128 (273)
T 3bus_A           50 TDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDA  128 (273)
T ss_dssp             HHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTT
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCC
Confidence            445555553 3689999999 9999999999875 569999999999999996  4555654 69999999876433457


Q ss_pred             CccEEEEcCCCCCch------HHHHhccccCcEEEEEe
Q psy8015          89 PYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        89 ~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~  120 (165)
                      +||+|++....++++      .++.+.|||||++++..
T Consensus       129 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          129 SFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIAD  166 (273)
T ss_dssp             CEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            899999999888775      35789999999999865

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.59  E-value=5.7e-15  Score=120.11  Aligned_cols=112  Identities=14%  Similarity=0.115  Sum_probs=87.8

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCC-----------CCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTID-----------PDH   72 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~-----------~~n   72 (165)
                      .+...+.+++.+. ..++.+|||+ ||+|+++..+++..   ++|+++|+++++++.|+  ++.++           .+|
T Consensus        90 ~~~~~~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~  168 (336)
T 2b25_A           90 FPKDINMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN  168 (336)
T ss_dssp             CHHHHHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred             CHHHHHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCc
Confidence            3455777888884 5899999999 99999999999874   78999999999999996  33221           358


Q ss_pred             eEEEEccCCCCCC--CCCCccEEEEcCCCC-CchHHHHhccccCcEEEEEecC
Q psy8015          73 DYDLIADGRASFG--DNGPYDAIHVGAAYP-RYPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        73 V~~~~gD~~~~~~--~~~~fD~I~i~~~~~-~~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      ++++.+|+.+...  +.++||+|+++...+ ...+.+.+.|||||++++....
T Consensus       169 v~~~~~d~~~~~~~~~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  221 (336)
T 2b25_A          169 VDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVN  221 (336)
T ss_dssp             EEEEESCTTCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred             eEEEECChHHcccccCCCCeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            9999999976532  245799999986655 4567899999999999998764

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.59  E-value=8.9e-15  Score=111.16  Aligned_cols=103  Identities=11%  Similarity=-0.006  Sum_probs=85.8

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDA   92 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~   92 (165)
                      ...+++.+.. .++.+|||+ ||+|.++..+++...+|+++|+++++++.|+.+. . .+++++.+|+.+...+ ++||+
T Consensus        34 ~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~d~~~~~~~-~~fD~  109 (220)
T 3hnr_A           34 YEDILEDVVN-KSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKL-P-KEFSITEGDFLSFEVP-TSIDT  109 (220)
T ss_dssp             HHHHHHHHHH-TCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHS-C-TTCCEESCCSSSCCCC-SCCSE
T ss_pred             HHHHHHHhhc-cCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhC-C-CceEEEeCChhhcCCC-CCeEE
Confidence            4567777754 688999999 9999999999998889999999999999997322 1 5899999999774433 89999


Q ss_pred             EEEcCCCCCchH--------HHHhccccCcEEEEEe
Q psy8015          93 IHVGAAYPRYPE--------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        93 I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~  120 (165)
                      |++....+++++        ++.+.|||||++++..
T Consensus       110 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  145 (220)
T 3hnr_A          110 IVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFAD  145 (220)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            999988876653        5678999999999975

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.59  E-value=1e-14  Score=113.41  Aligned_cols=111  Identities=14%  Similarity=0.007  Sum_probs=87.6

Q ss_pred             hHHHHHHHHHH----hcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccc-cCCCCCeEEEEccCCCCC
Q psy8015          11 SGAVAKYVTYL----SGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSS-TIDPDHDYDLIADGRASF   84 (165)
Q Consensus        11 ~~~~~~~l~~l----~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~-~~~~~nV~~~~gD~~~~~   84 (165)
                      +.....+++.+    ....++.+|||+ ||+|.++..+++...+|+++|+|++|++.|+.+ ..+..|++++.+|+.+..
T Consensus        20 ~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~   99 (263)
T 2yqz_A           20 PEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIP   99 (263)
T ss_dssp             HHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCC
T ss_pred             hHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCC
Confidence            34455666665    123678999999 999999999999888999999999999999722 234568999999986643


Q ss_pred             CCCCCccEEEEcCCCCCch------HHHHhccccCcEEEEEec
Q psy8015          85 GDNGPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        85 ~~~~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~~  121 (165)
                      .+.++||+|++....++++      .++.+.|||||++++..+
T Consensus       100 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (263)
T 2yqz_A          100 LPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWD  142 (263)
T ss_dssp             SCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEEec
Confidence            3457899999998877664      357899999999998743

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.58  E-value=6.9e-15  Score=116.93  Aligned_cols=110  Identities=14%  Similarity=-0.013  Sum_probs=88.4

Q ss_pred             HHHHHHHHHH---hcCCCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCC
Q psy8015          12 GAVAKYVTYL---SGHSKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRAS   83 (165)
Q Consensus        12 ~~~~~~l~~l---~~~~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~   83 (165)
                      .....+++.+   ....++.+|||+ ||+|.++..+++. ..+|+++|+++.+++.|+  .+..+. ++++++.+|..+.
T Consensus        65 ~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  144 (297)
T 2o57_A           65 RTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI  144 (297)
T ss_dssp             HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred             HHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC
Confidence            3456677777   245789999999 9999999999986 459999999999999996  444565 4799999998764


Q ss_pred             CCCCCCccEEEEcCCCCCch------HHHHhccccCcEEEEEec
Q psy8015          84 FGDNGPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        84 ~~~~~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~~  121 (165)
                      ..+.++||+|++....++++      .++.+.|||||++++...
T Consensus       145 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  188 (297)
T 2o57_A          145 PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP  188 (297)
T ss_dssp             SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            33457899999998877654      367899999999999753

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.58  E-value=4.3e-15  Score=117.58  Aligned_cols=104  Identities=11%  Similarity=0.068  Sum_probs=84.3

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCC-CCCCCc
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASF-GDNGPY   90 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~-~~~~~f   90 (165)
                      +++..+.  .++.+|||| ||+|.++..+++...+|+++|+++++++.|+  ++..+. ++++++.+|+.+.. ...++|
T Consensus        60 ~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~f  137 (285)
T 4htf_A           60 RVLAEMG--PQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPV  137 (285)
T ss_dssp             HHHHHTC--SSCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCE
T ss_pred             HHHHhcC--CCCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCc
Confidence            4444442  347899999 9999999999998889999999999999996  555666 58999999987643 245789


Q ss_pred             cEEEEcCCCCCch------HHHHhccccCcEEEEEec
Q psy8015          91 DAIHVGAAYPRYP------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        91 D~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~~  121 (165)
                      |+|++....++++      .++.+.|||||++++...
T Consensus       138 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          138 DLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            9999998887655      367899999999999764

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.58  E-value=7.6e-15  Score=116.58  Aligned_cols=109  Identities=16%  Similarity=0.057  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc---CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF---IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG   85 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~   85 (165)
                      .....+++.+....++.+|||| ||+|..+..+++.   ..+|+++|+++.+++.|+  .+..+. |++++.+|+.+ ++
T Consensus         8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~-~~   85 (284)
T 3gu3_A            8 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATE-IE   85 (284)
T ss_dssp             HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTT-CC
T ss_pred             HHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhh-cC
Confidence            4556666666555789999999 9999999999987   358999999999999996  344444 89999999976 34


Q ss_pred             CCCCccEEEEcCCCCCch------HHHHhccccCcEEEEEecC
Q psy8015          86 DNGPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        86 ~~~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~~~  122 (165)
                      ..++||+|++....++++      .++.+.|||||++++....
T Consensus        86 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           86 LNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             CSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cCCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            357899999998877665      3578999999999987654

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.58  E-value=1.8e-15  Score=114.87  Aligned_cols=113  Identities=8%  Similarity=0.078  Sum_probs=84.4

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG   85 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~   85 (165)
                      .......+++++....++.+|||+ ||+|.++..++... .+|+++|+|++|++.|+  ++..+.+|++++++|+.+.++
T Consensus        38 ~~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~  117 (202)
T 2fpo_A           38 TDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA  117 (202)
T ss_dssp             CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS
T ss_pred             HHHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh
Confidence            445556677776431278999999 99999999765544 69999999999999996  555677789999999865332


Q ss_pred             -CCCCccEEEEcCCCC--Cch---HHHHh--ccccCcEEEEEecC
Q psy8015          86 -DNGPYDAIHVGAAYP--RYP---EIFIH--HLKSGGRLVIPIGD  122 (165)
Q Consensus        86 -~~~~fD~I~i~~~~~--~~p---~~l~~--~LkpgG~lvi~~~~  122 (165)
                       ..++||+|+++..++  ...   +.+.+  .|+|||++++.+..
T Consensus       118 ~~~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          118 QKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             SCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             hcCCCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence             346899999987743  222   23433  49999999998764

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.58  E-value=2.2e-14  Score=110.82  Aligned_cols=111  Identities=13%  Similarity=0.053  Sum_probs=90.9

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGD   86 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~   86 (165)
                      +...+.++..+. ..++++|||+ ||+|.++..+++...+|+++|+++++++.|+  .+..++ +|++++.+|..+...+
T Consensus        77 ~~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  155 (248)
T 2yvl_A           77 PKDSFYIALKLN-LNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVP  155 (248)
T ss_dssp             HHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCC
T ss_pred             chhHHHHHHhcC-CCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccC
Confidence            455566666664 4789999999 9999999999988789999999999999996  455566 6899999999875524


Q ss_pred             CCCccEEEEcCCCC-CchHHHHhccccCcEEEEEecC
Q psy8015          87 NGPYDAIHVGAAYP-RYPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        87 ~~~fD~I~i~~~~~-~~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      .+.||+|+++...+ ...+.+.+.|+|||++++....
T Consensus       156 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  192 (248)
T 2yvl_A          156 EGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLPT  192 (248)
T ss_dssp             TTCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred             CCcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            46899999976544 5567889999999999998874

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.58  E-value=7.3e-15  Score=109.58  Aligned_cols=103  Identities=16%  Similarity=-0.021  Sum_probs=84.0

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDA   92 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~   92 (165)
                      .+++.+. ..++.+|||+ ||+|.++..+++...+|+++|+++.+++.|+  .+..+.+|++++.+|..+... .++||+
T Consensus        23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~  100 (199)
T 2xvm_A           23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDF  100 (199)
T ss_dssp             HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEE
T ss_pred             HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceE
Confidence            4555654 3678899999 9999999999988779999999999999996  444566789999999876433 578999


Q ss_pred             EEEcCCCCCch--------HHHHhccccCcEEEEEe
Q psy8015          93 IHVGAAYPRYP--------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        93 I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~  120 (165)
                      |++....++++        +.+.+.|||||++++..
T Consensus       101 v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A          101 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             EEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            99998776554        35789999999988754

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.58  E-value=3.2e-15  Score=116.31  Aligned_cols=98  Identities=14%  Similarity=0.032  Sum_probs=81.5

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCCccEEEEcC
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGPYDAIHVGA   97 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~fD~I~i~~   97 (165)
                      ..++.+|||| ||+|+++..+++..  .+|+++|+++.+++.|+  .+..|+. +|+++.+|+.+.+++.++||+|++.+
T Consensus        13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG   92 (225)
T 3kr9_A           13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG   92 (225)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence            3688999999 99999999999975  48999999999999996  6777886 49999999987776544799999876


Q ss_pred             CCC----CchHHHHhccccCcEEEEEec
Q psy8015          98 AYP----RYPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        98 ~~~----~~p~~l~~~LkpgG~lvi~~~  121 (165)
                      ...    .+.+...+.|+|+|++|+.-.
T Consensus        93 ~Gg~~i~~Il~~~~~~L~~~~~lVlq~~  120 (225)
T 3kr9_A           93 MGGRLIARILEEGLGKLANVERLILQPN  120 (225)
T ss_dssp             ECHHHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred             CChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            543    344567789999999998654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.58  E-value=1.1e-14  Score=113.14  Aligned_cols=112  Identities=13%  Similarity=0.010  Sum_probs=90.6

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc---CCcEEEEeCCHHHHHhcc--cccC-CCCCeEEEEccCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF---IPNSFNINVYYYLSGGPL--SSTI-DPDHDYDLIADGRAS   83 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~--~~~~-~~~nV~~~~gD~~~~   83 (165)
                      +...+.+++.+. ..++.+|||+ ||+|.++..+++.   ..+|+++|+++++++.|+  ++.. |.+|++++.+|+.+.
T Consensus        82 ~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~  160 (258)
T 2pwy_A           82 PKDASAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA  160 (258)
T ss_dssp             HHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC
T ss_pred             chHHHHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc
Confidence            445567777774 5789999999 9999999999987   469999999999999996  4444 667899999998765


Q ss_pred             CCCCCCccEEEEcCCCC-CchHHHHhccccCcEEEEEecCC
Q psy8015          84 FGDNGPYDAIHVGAAYP-RYPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        84 ~~~~~~fD~I~i~~~~~-~~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      ..+.++||+|+++...+ .+.+.+.+.|+|||++++.....
T Consensus       161 ~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  201 (258)
T 2pwy_A          161 ELEEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPNI  201 (258)
T ss_dssp             CCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred             CCCCCCcCEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            22346899999976544 56678899999999999988653

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.58  E-value=6e-15  Score=114.57  Aligned_cols=107  Identities=13%  Similarity=0.080  Sum_probs=87.9

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD   86 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~   86 (165)
                      +.....++++.+. ..++.+|||+ ||+|.++..+++.  ..+|+++|++++|++.|+.+   ..|++++.+|+.+.. .
T Consensus        18 ~~~~~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~---~~~~~~~~~d~~~~~-~   92 (259)
T 2p35_A           18 RTRPARDLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR---LPNTNFGKADLATWK-P   92 (259)
T ss_dssp             GGHHHHHHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH---STTSEEEECCTTTCC-C
T ss_pred             HHHHHHHHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---CCCcEEEECChhhcC-c
Confidence            4455566666664 3678999999 9999999999987  67999999999999999743   458999999987643 5


Q ss_pred             CCCccEEEEcCCCCCch------HHHHhccccCcEEEEEec
Q psy8015          87 NGPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        87 ~~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~~  121 (165)
                      .++||+|++....++++      .++.+.|||||++++...
T Consensus        93 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  133 (259)
T 2p35_A           93 AQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMP  133 (259)
T ss_dssp             SSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             cCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeC
Confidence            67899999998887664      357899999999999774

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.58  E-value=6.7e-15  Score=116.94  Aligned_cols=101  Identities=10%  Similarity=-0.015  Sum_probs=84.3

Q ss_pred             HhcCCCCCeEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEE
Q psy8015          21 LSGHSKRLDCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHV   95 (165)
Q Consensus        21 l~~~~~~~~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i   95 (165)
                      +....++++|||+ ||+|.++..+|+.++  +|+++|+++++++.|+  ++..+++|++++.+|+.+. +..++||+|++
T Consensus       114 ~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~~~~~D~Vi~  192 (272)
T 3a27_A          114 AFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-ELKDVADRVIM  192 (272)
T ss_dssp             HTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CCTTCEEEEEE
T ss_pred             HHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-CccCCceEEEE
Confidence            4345789999999 999999999999865  9999999999999996  5666788999999999775 44568999999


Q ss_pred             cCCC--CCchHHHHhccccCcEEEEEecC
Q psy8015          96 GAAY--PRYPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        96 ~~~~--~~~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      +...  ..+.+.+.+.|+|||++++.+..
T Consensus       193 d~p~~~~~~l~~~~~~LkpgG~l~~s~~~  221 (272)
T 3a27_A          193 GYVHKTHKFLDKTFEFLKDRGVIHYHETV  221 (272)
T ss_dssp             CCCSSGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCcccHHHHHHHHHHHcCCCCEEEEEEcC
Confidence            8764  23446778999999999998753

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.58  E-value=4.9e-15  Score=111.79  Aligned_cols=108  Identities=12%  Similarity=0.025  Sum_probs=86.2

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFG   85 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~   85 (165)
                      +....++++.+. ..++ +|||+ ||+|.++..+++. ..+|+++|+++++++.|+  ++..+.. |++++.+|..+...
T Consensus        30 ~~~~~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  107 (219)
T 3dlc_A           30 PIIAENIINRFG-ITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI  107 (219)
T ss_dssp             HHHHHHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS
T ss_pred             HHHHHHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC
Confidence            344566677664 3455 99999 9999999999987 458999999999999996  5555654 79999999976433


Q ss_pred             CCCCccEEEEcCCCCCch------HHHHhccccCcEEEEEe
Q psy8015          86 DNGPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        86 ~~~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~  120 (165)
                      +.++||+|++....++++      .++.+.|||||++++..
T Consensus       108 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          108 EDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEe
Confidence            457899999998877654      36789999999999964

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.58  E-value=2.2e-15  Score=116.14  Aligned_cols=109  Identities=11%  Similarity=0.091  Sum_probs=86.3

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRAS   83 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~   83 (165)
                      .+.....+..++. ..++.+|||+ ||+|+.+..+++..  .+|+++|+++++++.|+  ++..+.. +++++.+|+.+.
T Consensus        39 ~~~~~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  117 (233)
T 2gpy_A           39 DLLGMESLLHLLK-MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQL  117 (233)
T ss_dssp             CHHHHHHHHHHHH-HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGS
T ss_pred             CHHHHHHHHHHHh-ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH
Confidence            3444444444443 3678999999 99999999999884  79999999999999996  5666764 699999998764


Q ss_pred             CCC---CCCccEEEEcCCCCCch---HHHHhccccCcEEEEE
Q psy8015          84 FGD---NGPYDAIHVGAAYPRYP---EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        84 ~~~---~~~fD~I~i~~~~~~~p---~~l~~~LkpgG~lvi~  119 (165)
                      ++.   .++||+|+++...+..+   +.+.+.|+|||++++.
T Consensus       118 ~~~~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          118 GEKLELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             HHHHTTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             HHhcccCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            332   36899999998876554   5778999999999986

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.58  E-value=1.5e-15  Score=116.35  Aligned_cols=110  Identities=15%  Similarity=0.081  Sum_probs=86.6

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc---CCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF---IPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRA   82 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~   82 (165)
                      ++...+.++..+....++.+|||+ ||+|+.+..+++.   ..+|+++|+++++++.|+  ++..+. ++++++.+|+.+
T Consensus        53 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~  132 (229)
T 2avd_A           53 MTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE  132 (229)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHH
Confidence            444556666666555678999999 9999999999986   468999999999999996  556666 579999999854


Q ss_pred             CCCC---C---CCccEEEEcCCCCCch---HHHHhccccCcEEEEE
Q psy8015          83 SFGD---N---GPYDAIHVGAAYPRYP---EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        83 ~~~~---~---~~fD~I~i~~~~~~~p---~~l~~~LkpgG~lvi~  119 (165)
                      .++.   .   ++||+|+++.....++   +.+.+.|+|||++++.
T Consensus       133 ~~~~~~~~~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~  178 (229)
T 2avd_A          133 TLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVL  178 (229)
T ss_dssp             HHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHhcCCCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            3221   1   6899999988765443   5678999999999884

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.58  E-value=8.5e-15  Score=115.48  Aligned_cols=111  Identities=14%  Similarity=0.045  Sum_probs=90.5

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc---CCcEEEEeCCHHHHHhcc--cccC-C--CCCeEEEEccCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF---IPNSFNINVYYYLSGGPL--SSTI-D--PDHDYDLIADGR   81 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~--~~~~-~--~~nV~~~~gD~~   81 (165)
                      +...+.+++.+. ..++.+|||+ ||+|.++..+++.   ..+|+++|+++++++.|+  ++.. |  .+|++++.+|+.
T Consensus        85 ~~~~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~  163 (280)
T 1i9g_A           85 PKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA  163 (280)
T ss_dssp             HHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG
T ss_pred             HHHHHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchH
Confidence            455667777774 5789999999 9999999999986   469999999999999996  4444 4  568999999987


Q ss_pred             CCCCCCCCccEEEEcCCCC-CchHHHHhccccCcEEEEEecC
Q psy8015          82 ASFGDNGPYDAIHVGAAYP-RYPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        82 ~~~~~~~~fD~I~i~~~~~-~~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      +...+.++||+|+++...+ .+.+.+.+.|+|||++++.+..
T Consensus       164 ~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  205 (280)
T 1i9g_A          164 DSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVAT  205 (280)
T ss_dssp             GCCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             hcCCCCCceeEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            6543456899999976544 5667889999999999998764

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.57  E-value=2.2e-14  Score=112.45  Aligned_cols=107  Identities=9%  Similarity=-0.003  Sum_probs=87.3

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNG   88 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~   88 (165)
                      .+.....+++.+. ..++.+|||| ||+|.++..+++...+|+++|+|+.|++.|+.+.    |++++.+|+.+...+.+
T Consensus        19 ~~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~d~~~~~~~~~   93 (261)
T 3ege_A           19 DIRIVNAIINLLN-LPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP----QVEWFTGYAENLALPDK   93 (261)
T ss_dssp             CHHHHHHHHHHHC-CCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT----TEEEECCCTTSCCSCTT
T ss_pred             cHHHHHHHHHHhC-CCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc----CCEEEECchhhCCCCCC
Confidence            4556677777774 4789999999 9999999999997789999999999999886432    89999999976433457


Q ss_pred             CccEEEEcCCCCCch------HHHHhccccCcEEEEEecC
Q psy8015          89 PYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        89 ~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~~~  122 (165)
                      +||+|++....++++      .++.+.|| ||++++....
T Consensus        94 ~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~  132 (261)
T 3ege_A           94 SVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFD  132 (261)
T ss_dssp             CBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred             CEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence            999999998887654      36789999 9988876543

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.57  E-value=7.8e-15  Score=116.80  Aligned_cols=106  Identities=10%  Similarity=-0.019  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC-cEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCCC
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFGD   86 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~~   86 (165)
                      ....++.+.+   +++++|||+ ||+|+++..+++... +|+++|+|+++++.|+  .+..+++| ++++++|+.+... 
T Consensus       114 ~~~~~l~~~~---~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-  189 (278)
T 2frn_A          114 KERVRMAKVA---KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-  189 (278)
T ss_dssp             HHHHHHHHHC---CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-
T ss_pred             HHHHHHHHhC---CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-
Confidence            4445555543   579999999 999999999999876 5999999999999996  55557765 9999999987554 


Q ss_pred             CCCccEEEEcCCCC--CchHHHHhccccCcEEEEEec
Q psy8015          87 NGPYDAIHVGAAYP--RYPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        87 ~~~fD~I~i~~~~~--~~p~~l~~~LkpgG~lvi~~~  121 (165)
                      .++||+|+++....  .+.+.+.+.|||||++++...
T Consensus       190 ~~~fD~Vi~~~p~~~~~~l~~~~~~LkpgG~l~~~~~  226 (278)
T 2frn_A          190 ENIADRILMGYVVRTHEFIPKALSIAKDGAIIHYHNT  226 (278)
T ss_dssp             CSCEEEEEECCCSSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCccEEEECCchhHHHHHHHHHHHCCCCeEEEEEEe
Confidence            67899999976543  345678899999999999553

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.57  E-value=5.1e-15  Score=123.17  Aligned_cols=113  Identities=12%  Similarity=0.072  Sum_probs=88.5

Q ss_pred             chHHHHHHHHHHhc-----CCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCC
Q psy8015          10 VSGAVAKYVTYLSG-----HSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGR   81 (165)
Q Consensus        10 ~~~~~~~~l~~l~~-----~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~   81 (165)
                      .......+++.+..     ..++.+|||+ ||+|.++..+++...+|+++|+|+.+++.|+  ++..+. +++++.+|+.
T Consensus       212 ~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~-~v~~~~~D~~  290 (381)
T 3dmg_A          212 VDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANAL-KAQALHSDVD  290 (381)
T ss_dssp             CCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTT
T ss_pred             CCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEcchh
Confidence            34444555555532     1368899999 9999999999998889999999999999996  444454 4899999998


Q ss_pred             CCCCCCCCccEEEEcCCCCC-----c------hHHHHhccccCcEEEEEecCC
Q psy8015          82 ASFGDNGPYDAIHVGAAYPR-----Y------PEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        82 ~~~~~~~~fD~I~i~~~~~~-----~------p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      +...+.++||+|+++...+.     .      .+.+.+.|||||++++.++..
T Consensus       291 ~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~  343 (381)
T 3dmg_A          291 EALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF  343 (381)
T ss_dssp             TTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred             hccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence            76555579999999877664     1      235678999999999987653

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.57  E-value=2.2e-14  Score=110.29  Aligned_cols=96  Identities=15%  Similarity=0.035  Sum_probs=81.8

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCCch
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYP  103 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p  103 (165)
                      .++.+|||+ ||+|.++..+++...+|+++|+++.+++.|+.+. ...+++++.+|+.+...+.++||+|++....++++
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  130 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERG-EGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTE  130 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTT-CBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhc-ccCCceEEEcchhcCCCCCCCccEEEEcChHhhcc
Confidence            578999999 9999999999998889999999999999997432 34689999999976433467999999999888765


Q ss_pred             H------HHHhccccCcEEEEEec
Q psy8015         104 E------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       104 ~------~l~~~LkpgG~lvi~~~  121 (165)
                      +      .+.+.|+|||++++...
T Consensus       131 ~~~~~l~~~~~~L~pgG~l~i~~~  154 (242)
T 3l8d_A          131 EPLRALNEIKRVLKSDGYACIAIL  154 (242)
T ss_dssp             CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHhCCCeEEEEEEc
Confidence            3      57899999999999764

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.57  E-value=4.2e-15  Score=111.47  Aligned_cols=97  Identities=12%  Similarity=0.138  Sum_probs=78.6

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCC-CCCCCccEEEE
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASF-GDNGPYDAIHV   95 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~-~~~~~fD~I~i   95 (165)
                      .+++++|||+ ||+|..+..+++..   ++|+++|+++++++.|+  ++..+. +|++++.+|+.+.. ...++||+|++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~   99 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF   99 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence            3789999999 99999999999874   59999999999999996  566676 68999999986532 23478999999


Q ss_pred             cCCC-C--------------CchHHHHhccccCcEEEEEe
Q psy8015          96 GAAY-P--------------RYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        96 ~~~~-~--------------~~p~~l~~~LkpgG~lvi~~  120 (165)
                      +... +              .+.+.+.+.|||||++++..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A          100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence            8644 1              12346789999999999876

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.57  E-value=8.4e-16  Score=119.11  Aligned_cols=109  Identities=16%  Similarity=0.146  Sum_probs=85.1

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRAS   83 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~   83 (165)
                      +...++++..+....++.+|||+ ||+|+.+..+++..   ++|+++|+++++++.|+  ++..+.. +++++.+|+.+.
T Consensus        57 ~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~  136 (232)
T 3cbg_A           57 SPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALAT  136 (232)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence            44556666665544578899999 99999999999874   58999999999999996  5556664 599999997542


Q ss_pred             CCC----C--CCccEEEEcCCCCCch---HHHHhccccCcEEEEE
Q psy8015          84 FGD----N--GPYDAIHVGAAYPRYP---EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        84 ~~~----~--~~fD~I~i~~~~~~~p---~~l~~~LkpgG~lvi~  119 (165)
                      ++.    .  ++||+||+++..+.++   +.+.+.|+|||++++.
T Consensus       137 l~~l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~  181 (232)
T 3cbg_A          137 LEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVID  181 (232)
T ss_dssp             HHHHHTSSSCCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             HHHHHhcCCCCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            221    2  6899999998755443   5678999999999984

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.56  E-value=6.1e-15  Score=113.72  Aligned_cols=98  Identities=12%  Similarity=0.067  Sum_probs=80.2

Q ss_pred             CCCeEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC---CCCCCccEEEEcC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF---GDNGPYDAIHVGA   97 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~---~~~~~fD~I~i~~   97 (165)
                      ++.+|||| ||+|.++..+|+...  +|+++|+++++++.|+  .+..+++|++++.+|+.+.+   .+.++||.|++..
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            57899999 999999999998763  6999999999999996  56678889999999987632   2357999999985


Q ss_pred             CCCC--------------chHHHHhccccCcEEEEEecCC
Q psy8015          98 AYPR--------------YPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        98 ~~~~--------------~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      ..+.              +.+.+.+.|||||++++.....
T Consensus       114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~  153 (218)
T 3dxy_A          114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWE  153 (218)
T ss_dssp             CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred             CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCH
Confidence            4431              3356778999999999987654

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.56  E-value=3.2e-15  Score=117.54  Aligned_cols=98  Identities=15%  Similarity=0.082  Sum_probs=80.5

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC---CCCccEEEEc
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD---NGPYDAIHVG   96 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~---~~~fD~I~i~   96 (165)
                      .++.+|||| ||+|+.+..+|...  .+|+++|+++++++.|+  .+.++++||+++++|+.+....   .++||+|++.
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence            368899999 99999999999874  58999999999999996  5667888999999998653321   3689999997


Q ss_pred             CCCC--CchHHHHhccccCcEEEEEecC
Q psy8015          97 AAYP--RYPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        97 ~~~~--~~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      +..+  .+.+.+.+.|||||++++..+.
T Consensus       159 a~~~~~~ll~~~~~~LkpgG~l~~~~g~  186 (249)
T 3g89_A          159 AVAPLCVLSELLLPFLEVGGAAVAMKGP  186 (249)
T ss_dssp             SSCCHHHHHHHHGGGEEEEEEEEEEECS
T ss_pred             CcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            6432  3445678999999999998764

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.56  E-value=1.1e-14  Score=115.41  Aligned_cols=107  Identities=11%  Similarity=0.007  Sum_probs=83.7

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc---CCcEEEEeCCHHHHHhcc--cccC-CCCCeEEEEccCCCCCCCC
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF---IPNSFNINVYYYLSGGPL--SSTI-DPDHDYDLIADGRASFGDN   87 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~--~~~~-~~~nV~~~~gD~~~~~~~~   87 (165)
                      ..+++.+. ..++.+|||+ ||+|.++..+++.   ..+|+++|+++++++.|+  ++.. |.+|++++.+|+.+.++ .
T Consensus       100 ~~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~-~  177 (275)
T 1yb2_A          100 SYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS-D  177 (275)
T ss_dssp             ------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC-S
T ss_pred             HHHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCc-C
Confidence            34555553 4789999999 9999999999987   579999999999999996  5555 77799999999987444 4


Q ss_pred             CCccEEEEcCCCC-CchHHHHhccccCcEEEEEecCC
Q psy8015          88 GPYDAIHVGAAYP-RYPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        88 ~~fD~I~i~~~~~-~~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      ++||+|+++...+ .+.+.+.+.|||||++++.....
T Consensus       178 ~~fD~Vi~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  214 (275)
T 1yb2_A          178 QMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNF  214 (275)
T ss_dssp             CCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred             CCccEEEEcCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            6899999964432 45578899999999999987653

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.56  E-value=9.9e-15  Score=113.39  Aligned_cols=96  Identities=10%  Similarity=0.004  Sum_probs=79.7

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCC-cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCCc
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRY  102 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~  102 (165)
                      .++.+|||+ ||+|.++..+++... +|+++|+++++++.|+.+. ...+++++.+|+.....+.++||+|++....+++
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  121 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKT-TSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYI  121 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHC-CCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhh-ccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhh
Confidence            478999999 999999999998875 9999999999999997322 1468999999987643345799999999887765


Q ss_pred             h------HHHHhccccCcEEEEEec
Q psy8015         103 P------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       103 p------~~l~~~LkpgG~lvi~~~  121 (165)
                      +      .++.+.|||||++++.+.
T Consensus       122 ~~~~~~l~~~~~~LkpgG~l~~~~~  146 (253)
T 3g5l_A          122 ASFDDICKKVYINLKSSGSFIFSVE  146 (253)
T ss_dssp             SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhHHHHHHHHHHHcCCCcEEEEEeC
Confidence            4      367899999999999753

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.56  E-value=2.2e-14  Score=109.30  Aligned_cols=98  Identities=12%  Similarity=0.111  Sum_probs=80.3

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC--CCCCCccEEEEcC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF--GDNGPYDAIHVGA   97 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~--~~~~~fD~I~i~~   97 (165)
                      .++.+|||+ ||+|.++..+++..  .+|+++|+++++++.|+  .+..+++|++++.+|+.+..  .+.++||.|+++.
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~  119 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF  119 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence            468999999 99999999999875  58999999999999996  55567789999999997632  2356899999987


Q ss_pred             CCCC--------------chHHHHhccccCcEEEEEecC
Q psy8015          98 AYPR--------------YPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        98 ~~~~--------------~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      ..+.              +.+.+.+.|+|||++++....
T Consensus       120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  158 (214)
T 1yzh_A          120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN  158 (214)
T ss_dssp             CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred             CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC
Confidence            6542              334678999999999998754

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.56  E-value=4.8e-15  Score=123.03  Aligned_cols=117  Identities=13%  Similarity=0.054  Sum_probs=91.6

Q ss_pred             EecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC---CeEEE
Q psy8015           5 FVSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD---HDYDL   76 (165)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~---nV~~~   76 (165)
                      |+...+......+++.+.. .++.+|||+ ||+|.++..+++..  .+|+++|+|+.+++.|+  .+..++.   +++++
T Consensus       202 Fs~~~~d~~~~~ll~~l~~-~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~  280 (375)
T 4dcm_A          202 FSRTGLDIGARFFMQHLPE-NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFM  280 (375)
T ss_dssp             TTCSSCCHHHHHHHHTCCC-SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred             ccCCcccHHHHHHHHhCcc-cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEE
Confidence            4444566666778888754 667999999 99999999999984  68999999999999996  4444543   68999


Q ss_pred             EccCCCCCCCCCCccEEEEcCCCCC-----------chHHHHhccccCcEEEEEecCC
Q psy8015          77 IADGRASFGDNGPYDAIHVGAAYPR-----------YPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        77 ~gD~~~~~~~~~~fD~I~i~~~~~~-----------~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      .+|+.+.++ .++||+|+++..++.           +.+.+.+.|||||++++.....
T Consensus       281 ~~D~~~~~~-~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~  337 (375)
T 4dcm_A          281 INNALSGVE-PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH  337 (375)
T ss_dssp             ECSTTTTCC-TTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             echhhccCC-CCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECC
Confidence            999987554 468999999877652           2356789999999999987643

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.56  E-value=1.3e-14  Score=114.82  Aligned_cols=104  Identities=13%  Similarity=-0.031  Sum_probs=84.8

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCcc
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYD   91 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD   91 (165)
                      ..+++.+.. .++.+|||+ ||+|.++..+++...+|+++|+|+.+++.|+  .+..+. +++++.+|+.+... .++||
T Consensus       110 ~~~~~~~~~-~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~-~~~fD  186 (286)
T 3m70_A          110 GDVVDAAKI-ISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI-QENYD  186 (286)
T ss_dssp             HHHHHHHHH-SCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC-CSCEE
T ss_pred             HHHHHHhhc-cCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc-cCCcc
Confidence            345556644 478999999 9999999999998889999999999999996  455566 89999999876433 67899


Q ss_pred             EEEEcCCCCCch--------HHHHhccccCcEEEEEec
Q psy8015          92 AIHVGAAYPRYP--------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        92 ~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~~  121 (165)
                      +|++....++++        +.+.+.|||||++++...
T Consensus       187 ~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (286)
T 3m70_A          187 FIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA  224 (286)
T ss_dssp             EEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            999998876553        357899999999887653

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.56  E-value=6.1e-15  Score=114.06  Aligned_cols=96  Identities=9%  Similarity=-0.030  Sum_probs=78.3

Q ss_pred             CCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR  101 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~  101 (165)
                      ++.+|||+ ||+|.++..+++.. .+|+++|+++++++.|+  .+..+..+++++.+|+.....+.++||+|++....++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  158 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH  158 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence            58999999 99999999988764 59999999999999996  4433345799999998664444568999999988776


Q ss_pred             chH--------HHHhccccCcEEEEEec
Q psy8015         102 YPE--------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       102 ~p~--------~l~~~LkpgG~lvi~~~  121 (165)
                      +++        .+.+.|||||++++...
T Consensus       159 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~  186 (241)
T 2ex4_A          159 LTDQHLAEFLRRCKGSLRPNGIIVIKDN  186 (241)
T ss_dssp             SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence            653        46789999999999553

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.56  E-value=3.2e-15  Score=109.00  Aligned_cols=114  Identities=7%  Similarity=-0.058  Sum_probs=87.2

Q ss_pred             chHHHHHHHHHHhcC-CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC
Q psy8015          10 VSGAVAKYVTYLSGH-SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG   85 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~-~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~   85 (165)
                      .......+++++... .++.+|||+ ||+|.++..+++...+|+++|+|+++++.|+  .+..+. |++++++|+.+..+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~  102 (171)
T 1ws6_A           24 PVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLP  102 (171)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHH
Confidence            445566677776531 278999999 9999999999998777999999999999996  444556 89999999865322


Q ss_pred             C----CCCccEEEEcCCCC-Cc---hHHHH--hccccCcEEEEEecCCC
Q psy8015          86 D----NGPYDAIHVGAAYP-RY---PEIFI--HHLKSGGRLVIPIGDTK  124 (165)
Q Consensus        86 ~----~~~fD~I~i~~~~~-~~---p~~l~--~~LkpgG~lvi~~~~~~  124 (165)
                      .    .++||+|+++.... ..   .+.+.  +.|+|||++++.+....
T Consensus       103 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~  151 (171)
T 1ws6_A          103 EAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDL  151 (171)
T ss_dssp             HHHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred             hhhccCCceEEEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence            1    24799999986552 22   24556  88999999999887654

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.56  E-value=3.5e-14  Score=108.07  Aligned_cols=97  Identities=13%  Similarity=0.076  Sum_probs=79.1

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCC--C
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAA--Y   99 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~--~   99 (165)
                      .++.+|||+ ||+|.++..+++...+|+++|+++++++.|+  .+..+ .+++++.+|..+...+.++||+|++...  .
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~  115 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSFEDKTFDYVIFIDSIVH  115 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence            468999999 9999999999998889999999999999996  34444 6899999998763333568999999877  4


Q ss_pred             CCch------HHHHhccccCcEEEEEecC
Q psy8015         100 PRYP------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus       100 ~~~p------~~l~~~LkpgG~lvi~~~~  122 (165)
                      .+.+      ..+.+.|||||++++....
T Consensus       116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          116 FEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             CCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            4433      3578999999999987653

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.56  E-value=9e-15  Score=110.39  Aligned_cols=112  Identities=11%  Similarity=0.012  Sum_probs=84.7

Q ss_pred             EecCCchHHHHHHHHHHhc-CCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEcc
Q psy8015           5 FVSGSVSGAVAKYVTYLSG-HSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIAD   79 (165)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~-~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD   79 (165)
                      |+++.. .....+++++.. ..++.+|||+ ||+|.++..+++.. .+|+++|+++++++.|+  ++..+..|++++.+|
T Consensus        39 f~~~~~-~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d  117 (205)
T 3grz_A           39 FGTGNH-QTTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTS  117 (205)
T ss_dssp             ---CCH-HHHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESS
T ss_pred             cCCCCC-ccHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecc
Confidence            444432 334445555532 2678999999 99999999999874 48999999999999996  556677789999999


Q ss_pred             CCCCCCCCCCccEEEEcCCCCCc---hHHHHhccccCcEEEEE
Q psy8015          80 GRASFGDNGPYDAIHVGAAYPRY---PEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        80 ~~~~~~~~~~fD~I~i~~~~~~~---p~~l~~~LkpgG~lvi~  119 (165)
                      .....  .++||+|+++...+.+   .+.+.+.|+|||++++.
T Consensus       118 ~~~~~--~~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  158 (205)
T 3grz_A          118 LLADV--DGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFS  158 (205)
T ss_dssp             TTTTC--CSCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEEE
T ss_pred             ccccC--CCCceEEEECCcHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            87643  3689999998766543   34567899999999986

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.56  E-value=2.8e-15  Score=110.99  Aligned_cols=115  Identities=10%  Similarity=0.004  Sum_probs=87.4

Q ss_pred             CchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCC
Q psy8015           9 SVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRAS   83 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~   83 (165)
                      +.+.....+++++....++.+|||+ ||+|.++..+++.. .+|+++|+++++++.|+  .+..++ +|++++++|+.+.
T Consensus        27 ~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  106 (187)
T 2fhp_A           27 TTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA  106 (187)
T ss_dssp             CCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred             CHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHH
Confidence            4556677788888544578999999 99999999887754 68999999999999996  455565 4799999998653


Q ss_pred             CC----CCCCccEEEEcCCCC--Cch---HHH--HhccccCcEEEEEecCC
Q psy8015          84 FG----DNGPYDAIHVGAAYP--RYP---EIF--IHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        84 ~~----~~~~fD~I~i~~~~~--~~p---~~l--~~~LkpgG~lvi~~~~~  123 (165)
                      .+    +.++||+|+++....  ..+   ..+  .+.|+|||++++.....
T Consensus       107 ~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  157 (187)
T 2fhp_A          107 LEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKT  157 (187)
T ss_dssp             HHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             HHHHHhcCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence            22    146899999986643  222   234  67799999999987654

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.55  E-value=3.4e-15  Score=110.15  Aligned_cols=113  Identities=9%  Similarity=-0.014  Sum_probs=85.9

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFG   85 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~   85 (165)
                      +.....+++++....++.+|||+ ||+|.++..+++.. .+|+++|+++++++.|+  ++..++. +++++.+|+.+.++
T Consensus        16 ~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (177)
T 2esr_A           16 DKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAID   95 (177)
T ss_dssp             --CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHH
Confidence            34466777777534678999999 99999999998874 68999999999999996  5556664 79999999865322


Q ss_pred             -CCCCccEEEEcCCCC-----CchHHHH--hccccCcEEEEEecCC
Q psy8015          86 -DNGPYDAIHVGAAYP-----RYPEIFI--HHLKSGGRLVIPIGDT  123 (165)
Q Consensus        86 -~~~~fD~I~i~~~~~-----~~p~~l~--~~LkpgG~lvi~~~~~  123 (165)
                       ..++||+|+++....     ...+.+.  +.|+|||++++.....
T Consensus        96 ~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  141 (177)
T 2esr_A           96 CLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKT  141 (177)
T ss_dssp             HBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             hhcCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence             235799999986642     1223454  8899999999988754

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.55  E-value=3.7e-15  Score=115.70  Aligned_cols=97  Identities=10%  Similarity=-0.007  Sum_probs=78.0

Q ss_pred             CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC---CCCccEEEEc
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD---NGPYDAIHVG   96 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~---~~~fD~I~i~   96 (165)
                      .++.+|||+ ||+|+.+..++..  ..+|+++|++++|++.|+  .+..+++|++++++|+.+....   .++||+|++.
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  148 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR  148 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence            368899999 9999999999953  468999999999999996  5566777899999998653211   4689999997


Q ss_pred             CCCCCc---hHHHHhccccCcEEEEEecC
Q psy8015          97 AAYPRY---PEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        97 ~~~~~~---p~~l~~~LkpgG~lvi~~~~  122 (165)
                      +. ..+   .+.+.+.|||||++++..+.
T Consensus       149 ~~-~~~~~~l~~~~~~LkpgG~l~~~~g~  176 (240)
T 1xdz_A          149 AV-ARLSVLSELCLPLVKKNGLFVALKAA  176 (240)
T ss_dssp             CC-SCHHHHHHHHGGGEEEEEEEEEEECC
T ss_pred             cc-CCHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            73 333   35677999999999997654

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.55  E-value=8.6e-15  Score=114.22  Aligned_cols=106  Identities=14%  Similarity=0.003  Sum_probs=84.3

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCCCCCC
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFGDNGP   89 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~~~~~   89 (165)
                      |+-....-..++.+|||| ||+|+++..+++..  .+|+|+|+++.+++.|+  .+..|+.+ |+++.+|+.+.+.+.++
T Consensus        11 RL~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~   90 (230)
T 3lec_A           11 RLQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADN   90 (230)
T ss_dssp             HHHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGC
T ss_pred             HHHHHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccc
Confidence            343333334688999999 99999999999975  48999999999999996  66778765 99999999887765457


Q ss_pred             ccEEEEcCCCC----CchHHHHhccccCcEEEEEec
Q psy8015          90 YDAIHVGAAYP----RYPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        90 fD~I~i~~~~~----~~p~~l~~~LkpgG~lvi~~~  121 (165)
                      ||+|++.+...    .+.+.+.+.|+++|++++.-.
T Consensus        91 ~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp~  126 (230)
T 3lec_A           91 IDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPN  126 (230)
T ss_dssp             CCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             cCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEECC
Confidence            99999876543    344566788999999988643

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.55  E-value=1.5e-14  Score=108.81  Aligned_cols=95  Identities=6%  Similarity=-0.097  Sum_probs=80.2

Q ss_pred             CCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCCch-
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYP-  103 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p-  103 (165)
                      ++.+|||+ ||+|.++..+++...+|+++|++++|++.|+.+   ..+++++.+|+.+...+.++||+|++....++++ 
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~  117 (203)
T 3h2b_A           41 VDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQT---HPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGP  117 (203)
T ss_dssp             CCSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHH---CTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCT
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHh---CCCCeEEeCcccccccCCCCeEEEEehhhHhcCCH
Confidence            48999999 999999999999888999999999999999743   3489999999876433457899999998887764 


Q ss_pred             -------HHHHhccccCcEEEEEecCC
Q psy8015         104 -------EIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus       104 -------~~l~~~LkpgG~lvi~~~~~  123 (165)
                             +++.+.|||||++++.....
T Consensus       118 ~~~~~~l~~~~~~L~pgG~l~i~~~~~  144 (203)
T 3h2b_A          118 GELPDALVALRMAVEDGGGLLMSFFSG  144 (203)
T ss_dssp             TTHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence                   25789999999999987543

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.55  E-value=6.3e-15  Score=113.90  Aligned_cols=95  Identities=14%  Similarity=-0.007  Sum_probs=74.1

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC--CCCCCCccEEEE-cC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS--FGDNGPYDAIHV-GA   97 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~--~~~~~~fD~I~i-~~   97 (165)
                      .++.+|||| ||+|+++..+++.. .+|+++|+|++|++.|+  .+..+ .|++++++|+.+.  ..+.++||+|++ ..
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~  137 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence            678999999 99999999998865 48999999999999996  44444 5799999998654  223478999999 33


Q ss_pred             CC--C--Cc------hHHHHhccccCcEEEEEe
Q psy8015          98 AY--P--RY------PEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        98 ~~--~--~~------p~~l~~~LkpgG~lvi~~  120 (165)
                      ..  +  +.      ..++.+.|||||++++..
T Consensus       138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence            22  1  11      245789999999998753

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.55  E-value=1.2e-15  Score=118.00  Aligned_cols=105  Identities=7%  Similarity=-0.138  Sum_probs=84.1

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCCCC
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDNGP   89 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~~~   89 (165)
                      ...+...+....++.+|||+ ||+|.++..+++...+|+++|+|+.+++.|+  ++..++ +|++++++|+.+.. ..++
T Consensus        66 ~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~  144 (241)
T 3gdh_A           66 AEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLK  144 (241)
T ss_dssp             HHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCC
T ss_pred             HHHHHHHhhhccCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCC
Confidence            44455555433478999999 9999999999998899999999999999996  566677 58999999987643 4578


Q ss_pred             ccEEEEcCCCCCchH------HHHhccccCcEEEEE
Q psy8015          90 YDAIHVGAAYPRYPE------IFIHHLKSGGRLVIP  119 (165)
Q Consensus        90 fD~I~i~~~~~~~p~------~l~~~LkpgG~lvi~  119 (165)
                      ||+|+++...+...+      ++.+.|+|||++++.
T Consensus       145 ~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          145 ADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             CSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred             CCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHH
Confidence            999999987765442      367889999987654

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.54  E-value=1.2e-14  Score=112.26  Aligned_cols=107  Identities=8%  Similarity=-0.056  Sum_probs=85.4

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--CCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--FGD   86 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~~~   86 (165)
                      ......++...+....++.+|||| ||+|.++..+++...+|+++|+|+++++.|+.+      ++++.+|..+.  ..+
T Consensus        25 ~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~d~~~~~~~~~   98 (240)
T 3dli_A           25 RELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK------FNVVKSDAIEYLKSLP   98 (240)
T ss_dssp             HHHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT------SEEECSCHHHHHHTSC
T ss_pred             HHHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh------cceeeccHHHHhhhcC
Confidence            344455566666555788999999 999999999999888999999999999998633      78899997652  123


Q ss_pred             CCCccEEEEcCCCCCch--------HHHHhccccCcEEEEEecC
Q psy8015          87 NGPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        87 ~~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~~~  122 (165)
                      .++||+|++....++++        .++.+.|||||++++....
T Consensus        99 ~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  142 (240)
T 3dli_A           99 DKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN  142 (240)
T ss_dssp             TTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred             CCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            57899999998887665        2578999999999997754

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.54  E-value=1.7e-14  Score=108.65  Aligned_cols=109  Identities=10%  Similarity=-0.041  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHH-HHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCC
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQ-STTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDN   87 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~-t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~   87 (165)
                      ....++++.+....++.+|||+ ||+|.. ...+++...+|+++|+|+++++.|+  .+..+ .+++++.+|+.+...+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~   87 (209)
T 2p8j_A            9 PQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLPFKD   87 (209)
T ss_dssp             THHHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCCSCT
T ss_pred             hhHHHHHHHHhccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCCCCC
Confidence            3456677766655778999999 999997 4555666679999999999999996  33333 47999999987643345


Q ss_pred             CCccEEEEcCCCCCch--------HHHHhccccCcEEEEEec
Q psy8015          88 GPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        88 ~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~~  121 (165)
                      ++||+|++....++++        +++.+.|||||++++...
T Consensus        88 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  129 (209)
T 2p8j_A           88 ESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFL  129 (209)
T ss_dssp             TCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            7899999987776663        257899999999999764

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.54  E-value=2.1e-14  Score=113.46  Aligned_cols=104  Identities=19%  Similarity=0.163  Sum_probs=85.6

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDA   92 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~   92 (165)
                      ...+++.+. ..++.+|||| ||+|.++..+++...+|+++|+++.|++.|+.+.   +|++++.+|+.+ ++..++||+
T Consensus        46 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~-~~~~~~fD~  120 (279)
T 3ccf_A           46 GEDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY---PHLHFDVADARN-FRVDKPLDA  120 (279)
T ss_dssp             CCHHHHHHC-CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---TTSCEEECCTTT-CCCSSCEEE
T ss_pred             HHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC---CCCEEEECChhh-CCcCCCcCE
Confidence            446677774 4788999999 9999999999997789999999999999997331   689999999876 344578999


Q ss_pred             EEEcCCCCCch------HHHHhccccCcEEEEEecC
Q psy8015          93 IHVGAAYPRYP------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        93 I~i~~~~~~~p------~~l~~~LkpgG~lvi~~~~  122 (165)
                      |++....++++      .++.+.|||||++++....
T Consensus       121 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~  156 (279)
T 3ccf_A          121 VFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGG  156 (279)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecC
Confidence            99998877654      3678999999999997654

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.54  E-value=2.2e-14  Score=121.18  Aligned_cols=109  Identities=10%  Similarity=-0.052  Sum_probs=86.3

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhc-------c--cccCC--CCCeEE
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGP-------L--SSTID--PDHDYD   75 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A-------~--~~~~~--~~nV~~   75 (165)
                      .+..++++++.+. ..++++|||+ ||+|+++..+|+..  .+|+++|+++.+++.|       +  ++.+|  ..|+++
T Consensus       227 ~p~~v~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~  305 (433)
T 1u2z_A          227 LPNFLSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF  305 (433)
T ss_dssp             CHHHHHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred             cHHHHHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEE
Confidence            4678889999885 5789999999 99999999999864  4799999999999988       5  45567  579999


Q ss_pred             EEccCCCC-CC---CCCCccEEEEcCCCC--Cch---HHHHhccccCcEEEEE
Q psy8015          76 LIADGRAS-FG---DNGPYDAIHVGAAYP--RYP---EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        76 ~~gD~~~~-~~---~~~~fD~I~i~~~~~--~~p---~~l~~~LkpgG~lvi~  119 (165)
                      +.+|.... ++   ..++||+|+++....  .++   .++.++|||||++++.
T Consensus       306 i~gD~~~~~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          306 SLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             EESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             EEcCccccccccccccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEe
Confidence            99876532 11   136899999874432  222   3788999999999986

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.54  E-value=1.6e-14  Score=109.31  Aligned_cols=101  Identities=14%  Similarity=0.025  Sum_probs=82.5

Q ss_pred             HHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEE
Q psy8015          17 YVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHV   95 (165)
Q Consensus        17 ~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i   95 (165)
                      +..++..+.++.+|||+ ||+|.++..+++...+|+++|+++++++.|+.+.    +++++.+|..... ..++||+|++
T Consensus        34 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~d~~~~~-~~~~fD~v~~  108 (211)
T 3e23_A           34 LTKFLGELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL----GRPVRTMLFHQLD-AIDAYDAVWA  108 (211)
T ss_dssp             HHHHHTTSCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----TSCCEECCGGGCC-CCSCEEEEEE
T ss_pred             HHHHHHhcCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc----CCceEEeeeccCC-CCCcEEEEEe
Confidence            33444444678999999 9999999999998889999999999999997332    5778889986543 5689999999


Q ss_pred             cCCCCCch--------HHHHhccccCcEEEEEecC
Q psy8015          96 GAAYPRYP--------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        96 ~~~~~~~p--------~~l~~~LkpgG~lvi~~~~  122 (165)
                      ....++++        .++.+.|||||++++....
T Consensus       109 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  143 (211)
T 3e23_A          109 HACLLHVPRDELADVLKLIWRALKPGGLFYASYKS  143 (211)
T ss_dssp             CSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            98887765        3578999999999998754

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.54  E-value=1.6e-14  Score=111.36  Aligned_cols=96  Identities=17%  Similarity=0.122  Sum_probs=75.4

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC----CCCCCCCccEEEEc
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA----SFGDNGPYDAIHVG   96 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~----~~~~~~~fD~I~i~   96 (165)
                      ..++.+|||+ ||+|.++..+++..  ++|+++|+++++++.|+.+....+|++++.+|+..    .... ++||+|+.+
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~  150 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIYED  150 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEEEC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEEEe
Confidence            3678999999 99999999999986  78999999999999986221123789999999875    2222 689999966


Q ss_pred             CCCCC----chHHHHhccccCcEEEEEe
Q psy8015          97 AAYPR----YPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        97 ~~~~~----~p~~l~~~LkpgG~lvi~~  120 (165)
                      ...+.    +.+.+.+.|||||++++..
T Consensus       151 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~  178 (230)
T 1fbn_A          151 VAQPNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             CCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCChhHHHHHHHHHHHhCCCCcEEEEEE
Confidence            43331    2456788999999999964

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.54  E-value=6.4e-15  Score=119.44  Aligned_cols=107  Identities=14%  Similarity=0.029  Sum_probs=82.5

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCC
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNG   88 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~   88 (165)
                      ..+...+....++++|||+ ||+|..|..++...   ++|+++|+++++++.++  +++.|..|++++++|+.......+
T Consensus       107 s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~  186 (315)
T 1ixk_A          107 SMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNV  186 (315)
T ss_dssp             HHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCC
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccc
Confidence            3333333345889999999 99999999999875   58999999999999996  666788899999999876332346


Q ss_pred             CccEEEEcCCCC------C----------------------chHHHHhccccCcEEEEEec
Q psy8015          89 PYDAIHVGAAYP------R----------------------YPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        89 ~fD~I~i~~~~~------~----------------------~p~~l~~~LkpgG~lvi~~~  121 (165)
                      +||+|+++..+.      +                      +.+.+.+.|||||++++...
T Consensus       187 ~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc  247 (315)
T 1ixk_A          187 EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC  247 (315)
T ss_dssp             CEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             cCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            899999975431      1                      11346789999999999643

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.54  E-value=5.2e-14  Score=103.32  Aligned_cols=108  Identities=6%  Similarity=-0.034  Sum_probs=85.7

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD   86 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~   86 (165)
                      .+.....+++.+. ..++.+|||+ ||+|.++..+++...+|+++|+++++++.|+  ++..+.+|++++.+|..+.++ 
T Consensus        20 ~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-   97 (183)
T 2yxd_A           20 KEEIRAVSIGKLN-LNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLD-   97 (183)
T ss_dssp             CHHHHHHHHHHHC-CCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGG-
T ss_pred             HHHHHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccccc-
Confidence            4555667777774 4788999999 9999999999996679999999999999996  556677889999999876443 


Q ss_pred             CCCccEEEEcCCCCCchH---HHHhccccCcEEEEEecC
Q psy8015          87 NGPYDAIHVGAAYPRYPE---IFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        87 ~~~fD~I~i~~~~~~~p~---~l~~~LkpgG~lvi~~~~  122 (165)
                      .++||+|+++.. +...+   .+.+.  |||++++....
T Consensus        98 ~~~~D~i~~~~~-~~~~~~l~~~~~~--~gG~l~~~~~~  133 (183)
T 2yxd_A           98 KLEFNKAFIGGT-KNIEKIIEILDKK--KINHIVANTIV  133 (183)
T ss_dssp             GCCCSEEEECSC-SCHHHHHHHHHHT--TCCEEEEEESC
T ss_pred             CCCCcEEEECCc-ccHHHHHHHHhhC--CCCEEEEEecc
Confidence            368999999887 43332   33333  99999998743

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.54  E-value=2.6e-14  Score=107.71  Aligned_cols=110  Identities=9%  Similarity=-0.036  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHhcCC--CCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC
Q psy8015          12 GAVAKYVTYLSGHS--KRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF   84 (165)
Q Consensus        12 ~~~~~~l~~l~~~~--~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~   84 (165)
                      ..+..+++.+....  ++.+|||+ ||+|..+..++..  ..+|+++|+++++++.|+  .+..+.+|++++.+|+.+..
T Consensus        49 ~~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  128 (207)
T 1jsx_A           49 MLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP  128 (207)
T ss_dssp             HHHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC
T ss_pred             HHHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC
Confidence            34556666664311  48899999 9999999999986  468999999999999996  56667878999999987643


Q ss_pred             CCCCCccEEEEcCCCCCc---hHHHHhccccCcEEEEEecCC
Q psy8015          85 GDNGPYDAIHVGAAYPRY---PEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        85 ~~~~~fD~I~i~~~~~~~---p~~l~~~LkpgG~lvi~~~~~  123 (165)
                       +.++||+|++... +.+   .+.+.+.|+|||++++..+..
T Consensus       129 -~~~~~D~i~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~~  168 (207)
T 1jsx_A          129 -SEPPFDGVISRAF-ASLNDMVSWCHHLPGEQGRFYALKGQM  168 (207)
T ss_dssp             -CCSCEEEEECSCS-SSHHHHHHHHTTSEEEEEEEEEEESSC
T ss_pred             -ccCCcCEEEEecc-CCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence             3468999997643 333   356788999999999987654

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.54  E-value=2.6e-14  Score=114.01  Aligned_cols=110  Identities=9%  Similarity=0.065  Sum_probs=86.5

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCC---CCeEEEEccCCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDP---DHDYDLIADGRAS   83 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~---~nV~~~~gD~~~~   83 (165)
                      .......+++.+.  .++.+|||| ||+|.++..+++...+|+++|+++.+++.|+  ....+.   .|++++++|+.+.
T Consensus        68 ~~~~~~~~~~~~~--~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~  145 (299)
T 3g2m_A           68 GTSEAREFATRTG--PVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF  145 (299)
T ss_dssp             CHHHHHHHHHHHC--CCCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC
T ss_pred             ccHHHHHHHHhhC--CCCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC
Confidence            3456677777774  345599999 9999999999998889999999999999996  444443   5899999999763


Q ss_pred             CCCCCCccEEEEc-CCCCCch--------HHHHhccccCcEEEEEecC
Q psy8015          84 FGDNGPYDAIHVG-AAYPRYP--------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        84 ~~~~~~fD~I~i~-~~~~~~p--------~~l~~~LkpgG~lvi~~~~  122 (165)
                       +..++||+|++. ...+.++        .++.+.|||||++++....
T Consensus       146 -~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  192 (299)
T 3g2m_A          146 -ALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAM  192 (299)
T ss_dssp             -CCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -CcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence             336789999875 3344443        3578999999999998754

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.54  E-value=1.8e-14  Score=110.36  Aligned_cols=98  Identities=9%  Similarity=0.087  Sum_probs=79.5

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC--CCCCCccEEEEcC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF--GDNGPYDAIHVGA   97 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~--~~~~~fD~I~i~~   97 (165)
                      .++.+|||| ||+|.++..+|+..  .+|+++|+++++++.|+  .+..+++|++++.+|+.+..  .+.++||.|++..
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~  116 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF  116 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence            468899999 99999999999874  58999999999999996  55667889999999987521  2346899999876


Q ss_pred             CCCC--------------chHHHHhccccCcEEEEEecC
Q psy8015          98 AYPR--------------YPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        98 ~~~~--------------~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      ..+.              +.+.+.+.|||||++++....
T Consensus       117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~  155 (213)
T 2fca_A          117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN  155 (213)
T ss_dssp             CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred             CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC
Confidence            5432              234678999999999998754

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.54  E-value=2.7e-14  Score=110.59  Aligned_cols=106  Identities=9%  Similarity=-0.008  Sum_probs=83.2

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDA   92 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~   92 (165)
                      ..+++.+. ..++.+|||+ ||+|.++..+++. ..+|+++|+++.+++.|+.+.....+++++.+|......+.++||+
T Consensus        83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~  161 (254)
T 1xtp_A           83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDL  161 (254)
T ss_dssp             HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEE
T ss_pred             HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEE
Confidence            34455543 2578999999 9999999988876 4679999999999999973222226799999998764334578999


Q ss_pred             EEEcCCCCCch--------HHHHhccccCcEEEEEec
Q psy8015          93 IHVGAAYPRYP--------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        93 I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~~  121 (165)
                      |++....++++        ..+.+.|||||++++...
T Consensus       162 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            99999888774        256899999999999764

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.53  E-value=1.3e-14  Score=114.08  Aligned_cols=98  Identities=9%  Similarity=-0.090  Sum_probs=80.9

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCCCCCCccEEEEcC
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFGDNGPYDAIHVGA   97 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~~~~~fD~I~i~~   97 (165)
                      ..++.+|||| ||+|+++..+++..  .+|+|+|+++.+++.|+  .+..|+.+ |+++.+|+.+.+.+..+||+|++.+
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag   98 (244)
T 3gnl_A           19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG   98 (244)
T ss_dssp             CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence            3688999999 99999999999975  48999999999999996  66778865 9999999988776544699998865


Q ss_pred             CCC----CchHHHHhccccCcEEEEEec
Q psy8015          98 AYP----RYPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        98 ~~~----~~p~~l~~~LkpgG~lvi~~~  121 (165)
                      ...    .+.+...+.|+++|++|+.-.
T Consensus        99 mGg~lI~~IL~~~~~~L~~~~~lIlq~~  126 (244)
T 3gnl_A           99 MGGTLIRTILEEGAAKLAGVTKLILQPN  126 (244)
T ss_dssp             ECHHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             CchHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence            543    344566788999999998643

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.53  E-value=1.6e-14  Score=112.26  Aligned_cols=94  Identities=14%  Similarity=-0.011  Sum_probs=74.0

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC--CCCCCccEEEEcCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF--GDNGPYDAIHVGAA   98 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~--~~~~~fD~I~i~~~   98 (165)
                      .+|.+|||| ||+|+.+..+++.. .+|+++|+|+++++.|+  .+.. ..+++++.+|+....  .+.++||.|+.+..
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~  137 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ-THKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGC-SSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhC-CCceEEEeehHHhhcccccccCCceEEEeee
Confidence            689999999 99999999998865 68999999999999997  3333 347899999975422  23578999998754


Q ss_pred             CC-----Cch------HHHHhccccCcEEEEE
Q psy8015          99 YP-----RYP------EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        99 ~~-----~~p------~~l~~~LkpgG~lvi~  119 (165)
                      ..     +.+      +++.+.|||||++++.
T Consensus       138 ~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence            43     333      3578999999999874

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.53  E-value=1.4e-14  Score=110.35  Aligned_cols=114  Identities=11%  Similarity=0.021  Sum_probs=84.5

Q ss_pred             ecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHh----cc--cccCCCCCeEEE
Q psy8015           6 VSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGG----PL--SSTIDPDHDYDL   76 (165)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~----A~--~~~~~~~nV~~~   76 (165)
                      .+..........++++.. .++.+|||+ ||+|.++..+++.  ..+|+++|++++|++.    |+  .+..+.+|++++
T Consensus         8 ~~~~~~~~~~~~~~~l~~-~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~   86 (218)
T 3mq2_A            8 VGKRVQEFSDAEFEQLRS-QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYL   86 (218)
T ss_dssp             ETTEEEECCHHHHHHHHT-TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEE
T ss_pred             cCccccccCHHHHHHhhc-cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEE
Confidence            334444555667777754 789999999 9999999999998  4689999999998885    22  344567899999


Q ss_pred             EccCCCCCCCCCCccEEEEcCCC-----------CCchHHHHhccccCcEEEEEec
Q psy8015          77 IADGRASFGDNGPYDAIHVGAAY-----------PRYPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        77 ~gD~~~~~~~~~~fD~I~i~~~~-----------~~~p~~l~~~LkpgG~lvi~~~  121 (165)
                      ++|+.+.....+. |.+++....           ..+..++.+.|||||++++.++
T Consensus        87 ~~d~~~l~~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  141 (218)
T 3mq2_A           87 WATAERLPPLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALN  141 (218)
T ss_dssp             ECCSTTCCSCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ecchhhCCCCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEec
Confidence            9999773333344 777754322           2233578899999999999764

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.53  E-value=3.8e-14  Score=108.90  Aligned_cols=104  Identities=11%  Similarity=-0.031  Sum_probs=82.6

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC-cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEE
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAI   93 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I   93 (165)
                      .+.+.+. ..++.+|||+ ||+|.++..+++... +|+++|+++++++.|+.+. ...+++++.+|..+...+.++||+|
T Consensus        34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~d~~~~~~~~~~fD~v  111 (243)
T 3bkw_A           34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAG-PDTGITYERADLDKLHLPQDSFDLA  111 (243)
T ss_dssp             HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTS-CSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred             HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhc-ccCCceEEEcChhhccCCCCCceEE
Confidence            3445543 3688999999 999999999998766 9999999999999997322 1247999999987643345789999


Q ss_pred             EEcCCCCCch------HHHHhccccCcEEEEEec
Q psy8015          94 HVGAAYPRYP------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        94 ~i~~~~~~~p------~~l~~~LkpgG~lvi~~~  121 (165)
                      ++....++++      ..+.+.|||||++++...
T Consensus       112 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  145 (243)
T 3bkw_A          112 YSSLALHYVEDVARLFRTVHQALSPGGHFVFSTE  145 (243)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEeccccccchHHHHHHHHHHhcCcCcEEEEEeC
Confidence            9998776654      357899999999999764

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.53  E-value=3e-14  Score=113.68  Aligned_cols=106  Identities=8%  Similarity=-0.035  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHh---ccCCcEEEEeCCHHHHHhcc--cccC--CCCCeEEEEccCCCC
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLP---TFIPNSFNINVYYYLSGGPL--SSTI--DPDHDYDLIADGRAS   83 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la---~~~~~V~aiD~~~~~~~~A~--~~~~--~~~nV~~~~gD~~~~   83 (165)
                      .....++..+.. .++.+|||+ ||+|..+..++   ....+|+++|+++.+++.|+  ++..  ...|++++++|+.+.
T Consensus        23 ~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~  101 (299)
T 3g5t_A           23 SDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDF  101 (299)
T ss_dssp             HHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCC
T ss_pred             HHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhC
Confidence            334444444433 589999999 99999999999   45679999999999999996  3332  256899999999763


Q ss_pred             CCCC------CCccEEEEcCCCCCc-----hHHHHhccccCcEEEE
Q psy8015          84 FGDN------GPYDAIHVGAAYPRY-----PEIFIHHLKSGGRLVI  118 (165)
Q Consensus        84 ~~~~------~~fD~I~i~~~~~~~-----p~~l~~~LkpgG~lvi  118 (165)
                      ....      ++||+|++....+++     .+++.+.|||||++++
T Consensus       102 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          102 KFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             GGGCTTTTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             CccccccccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEE
Confidence            3233      689999999887654     2367899999999988

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.53  E-value=2.7e-14  Score=117.03  Aligned_cols=110  Identities=12%  Similarity=-0.026  Sum_probs=88.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD   86 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~   86 (165)
                      ..+.++.++ ...++.+|||+ ||+|.++..++...   .+|+++|+|+++++.|+  ++..|+++++++++|+.+....
T Consensus       191 la~~l~~~~-~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~  269 (354)
T 3tma_A          191 LAQALLRLA-DARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF  269 (354)
T ss_dssp             HHHHHHHHT-TCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT
T ss_pred             HHHHHHHHh-CCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc
Confidence            444555555 45789999999 99999999999976   79999999999999996  6677877999999999775444


Q ss_pred             CCCccEEEEcCCCCC--------------chHHHHhccccCcEEEEEecCC
Q psy8015          87 NGPYDAIHVGAAYPR--------------YPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        87 ~~~fD~I~i~~~~~~--------------~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      ...||+|+++..+..              +.+.+.+.|||||++++.....
T Consensus       270 ~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~  320 (354)
T 3tma_A          270 FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP  320 (354)
T ss_dssp             CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred             cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            567999999866532              1135678999999999988754

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.53  E-value=2e-14  Score=112.78  Aligned_cols=109  Identities=13%  Similarity=0.028  Sum_probs=84.5

Q ss_pred             HHHHHHHhcCC-CCCeEEEE-ccccHHHHHHhccCC-cEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCC--C
Q psy8015          15 AKYVTYLSGHS-KRLDCLAL-TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFG--D   86 (165)
Q Consensus        15 ~~~l~~l~~~~-~~~~vLei-~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~--~   86 (165)
                      +.++..+.... ++.+|||+ ||+|.++..+++... +|+++|+++++++.|+  ++..++. +++++++|+.+...  +
T Consensus        37 ~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~  116 (259)
T 3lpm_A           37 AVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIP  116 (259)
T ss_dssp             HHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSC
T ss_pred             HHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhc
Confidence            34555554556 79999999 999999999998875 9999999999999996  5556665 59999999876432  2


Q ss_pred             CCCccEEEEcCCCCC--------------------------chHHHHhccccCcEEEEEecCC
Q psy8015          87 NGPYDAIHVGAAYPR--------------------------YPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        87 ~~~fD~I~i~~~~~~--------------------------~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      .++||+|+++..+..                          +.+.+.+.|||||++++.....
T Consensus       117 ~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  179 (259)
T 3lpm_A          117 KERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE  179 (259)
T ss_dssp             TTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred             cCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH
Confidence            478999999754321                          2235678999999999987543

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.52  E-value=1.1e-14  Score=112.68  Aligned_cols=117  Identities=13%  Similarity=-0.011  Sum_probs=85.7

Q ss_pred             CeEEEecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhc--cCCcEEEEeCC-HHHHHhc---c--cccCCCC
Q psy8015           1 MLIVFVSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPT--FIPNSFNINVY-YYLSGGP---L--SSTIDPD   71 (165)
Q Consensus         1 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~--~~~~V~aiD~~-~~~~~~A---~--~~~~~~~   71 (165)
                      |.+..+...++-....+.++..  .++++|||| ||+|.++..+++  ...+|+++|+| +.|++.|   +  .++.+..
T Consensus         1 ~~~l~g~~~~~~~~~~~~~~~~--~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~   78 (225)
T 3p2e_A            1 MLILKGTKTVDLSKDELTEIIG--QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS   78 (225)
T ss_dssp             -CEEETTEEECCCHHHHHHHHT--TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS
T ss_pred             CccccccccccCCHHHHHHHhC--CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC
Confidence            4455555556666677777764  688999999 999999999994  34689999999 7776665   4  4556788


Q ss_pred             CeEEEEccCCCCCCC--CCCccEEEEcCCCCC-----------chHHHHhccccCcEEEEEe
Q psy8015          72 HDYDLIADGRASFGD--NGPYDAIHVGAAYPR-----------YPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        72 nV~~~~gD~~~~~~~--~~~fD~I~i~~~~~~-----------~p~~l~~~LkpgG~lvi~~  120 (165)
                      |++++.+|+... +.  .+.+|.+++....+.           +..++.+.|||||++++..
T Consensus        79 ~v~~~~~d~~~l-~~~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~  139 (225)
T 3p2e_A           79 NVVFVIAAAESL-PFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT  139 (225)
T ss_dssp             SEEEECCBTTBC-CGGGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CeEEEEcCHHHh-hhhccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence            999999998764 32  256777777543321           2246789999999999943

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.52  E-value=4.7e-14  Score=111.58  Aligned_cols=109  Identities=13%  Similarity=0.070  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc---CCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCC
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF---IPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASF   84 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~   84 (165)
                      ...+.++..+. ..++.+|||+ ||+|.++..+++.   ..+|+++|+++++++.|+  ++..++ ++++++.+|..+.+
T Consensus        99 ~~~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  177 (277)
T 1o54_A           99 KDSSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF  177 (277)
T ss_dssp             HHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC
T ss_pred             HHHHHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcc
Confidence            44456677664 5789999999 9999999999987   468999999999999996  555666 57999999987764


Q ss_pred             CCCCCccEEEEcCCCC-CchHHHHhccccCcEEEEEecC
Q psy8015          85 GDNGPYDAIHVGAAYP-RYPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        85 ~~~~~fD~I~i~~~~~-~~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      + .++||+|+++...+ .+.+.+.+.|+|||++++....
T Consensus       178 ~-~~~~D~V~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (277)
T 1o54_A          178 D-EKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPT  215 (277)
T ss_dssp             S-CCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred             c-CCccCEEEECCcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            4 36899999976544 5667889999999999998874

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.52  E-value=5.1e-14  Score=108.06  Aligned_cols=108  Identities=13%  Similarity=0.029  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHhcC-CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCC
Q psy8015          12 GAVAKYVTYLSGH-SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDN   87 (165)
Q Consensus        12 ~~~~~~l~~l~~~-~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~   87 (165)
                      .....+.+++... .++.+|||+ ||+|.++..+++...+|+++|+++.|++.|+  ....+. +++++.+|..+...+ 
T Consensus        22 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~-   99 (246)
T 1y8c_A           22 KWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNIN-   99 (246)
T ss_dssp             HHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCS-
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCcc-
Confidence            3444555666432 278999999 9999999999998889999999999999996  444444 799999998764333 


Q ss_pred             CCccEEEEcC-CCCCch---------HHHHhccccCcEEEEEec
Q psy8015          88 GPYDAIHVGA-AYPRYP---------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        88 ~~fD~I~i~~-~~~~~p---------~~l~~~LkpgG~lvi~~~  121 (165)
                      ++||+|++.. ..++++         ..+.+.|||||++++.+.
T Consensus       100 ~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  143 (246)
T 1y8c_A          100 RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            7899999987 777662         246899999999998654

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.52  E-value=1.1e-14  Score=106.68  Aligned_cols=99  Identities=15%  Similarity=0.113  Sum_probs=82.3

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIH   94 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~   94 (165)
                      ++++.+. ..++.+|||+ ||+|.++..+++...+|+++|+++++++.|+.+   .+|++++.+|  ... +.++||+|+
T Consensus         8 ~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~~v~~~~~d--~~~-~~~~~D~v~   80 (170)
T 3i9f_A            8 EYLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK---FDSVITLSDP--KEI-PDNSVDFIL   80 (170)
T ss_dssp             TTHHHHH-SSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH---CTTSEEESSG--GGS-CTTCEEEEE
T ss_pred             HHHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh---CCCcEEEeCC--CCC-CCCceEEEE
Confidence            4556664 3788999999 999999999998877999999999999999744   4689999999  333 347899999


Q ss_pred             EcCCCCCch------HHHHhccccCcEEEEEec
Q psy8015          95 VGAAYPRYP------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        95 i~~~~~~~p------~~l~~~LkpgG~lvi~~~  121 (165)
                      +....++++      +++.+.|||||++++...
T Consensus        81 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  113 (170)
T 3i9f_A           81 FANSFHDMDDKQHVISEVKRILKDDGRVIIIDW  113 (170)
T ss_dssp             EESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EccchhcccCHHHHHHHHHHhcCCCCEEEEEEc
Confidence            999888764      467899999999999754

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.52  E-value=3.9e-14  Score=109.00  Aligned_cols=106  Identities=9%  Similarity=-0.055  Sum_probs=83.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCC-CCCeEEEEccCCCCCCCCC
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTID-PDHDYDLIADGRASFGDNG   88 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~-~~nV~~~~gD~~~~~~~~~   88 (165)
                      ...+++..+.  .++.+|||+ ||+|.++..+++...+|+++|+++.+++.|+  .+..+ ..|++++.+|+.+.. ..+
T Consensus        55 ~l~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~  131 (235)
T 3lcc_A           55 LIVHLVDTSS--LPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTE  131 (235)
T ss_dssp             HHHHHHHTTC--SCCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSS
T ss_pred             HHHHHHHhcC--CCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCC
Confidence            3344444432  245699999 9999999999998889999999999999996  33322 357999999997643 456


Q ss_pred             CccEEEEcCCCCCch--------HHHHhccccCcEEEEEec
Q psy8015          89 PYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        89 ~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~~  121 (165)
                      +||+|++....++++        +.+.+.|||||++++...
T Consensus       132 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  172 (235)
T 3lcc_A          132 LFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMY  172 (235)
T ss_dssp             CEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence            899999998887765        357889999999998654

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.52  E-value=3.6e-14  Score=109.72  Aligned_cols=97  Identities=13%  Similarity=0.096  Sum_probs=78.5

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC-----CCCccEEEEcC
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD-----NGPYDAIHVGA   97 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~-----~~~fD~I~i~~   97 (165)
                      ..++.+|||+ ||+|.++..+++...+|+++|+|+.+++.|+.+. ...|++++++|+.+....     ..+||+|++..
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~  132 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKEN-TAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT  132 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHS-CCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhC-cccCceEEECcccccccccccccccCccEEEEcc
Confidence            3678999999 9999999999998889999999999999997322 345899999998752111     12599999999


Q ss_pred             CCCCch--------HHHHhccccCcEEEEEec
Q psy8015          98 AYPRYP--------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        98 ~~~~~p--------~~l~~~LkpgG~lvi~~~  121 (165)
                      ..++++        .++.+.|||||++++...
T Consensus       133 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  164 (245)
T 3ggd_A          133 GFHHIPVEKRELLGQSLRILLGKQGAMYLIEL  164 (245)
T ss_dssp             SSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             hhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            888776        257899999999887653

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.52  E-value=9.1e-14  Score=104.36  Aligned_cols=105  Identities=8%  Similarity=-0.059  Sum_probs=79.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCC
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGP   89 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~   89 (165)
                      ....++..+   .++ +|||+ ||+|.++..+++...+|+++|+++++++.|+  .+..+. +++++.+|+.+...+.++
T Consensus        20 ~l~~~~~~~---~~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~   94 (202)
T 2kw5_A           20 FLVSVANQI---PQG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDIVADA   94 (202)
T ss_dssp             SHHHHHHHS---CSS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSCCTTT
T ss_pred             HHHHHHHhC---CCC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCCCcCC
Confidence            344444443   566 99999 9999999999998789999999999999996  333344 899999998764334578


Q ss_pred             ccEEEEcCCCCC------chHHHHhccccCcEEEEEecC
Q psy8015          90 YDAIHVGAAYPR------YPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        90 fD~I~i~~~~~~------~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      ||+|++......      +...+.+.|||||++++....
T Consensus        95 fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  133 (202)
T 2kw5_A           95 WEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFA  133 (202)
T ss_dssp             CSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred             ccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            999998532211      113578999999999998643

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.52  E-value=7.7e-14  Score=110.35  Aligned_cols=94  Identities=12%  Similarity=0.097  Sum_probs=77.8

Q ss_pred             CCCCeEEEE-ccccHHHHHHh-ccCCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLP-TFIPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la-~~~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      .++.+|||| ||+|.++..++ +...+|+++|+|+++++.|+  .+..+. ++++++.+|... ++  ++||+|++....
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~--~~fD~v~~~~~l  139 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FD--EPVDRIVSIGAF  139 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CC--CCCSEEEEESCG
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CC--CCeeEEEEeCch
Confidence            678999999 99999999998 44569999999999999996  455565 479999999854 34  789999999877


Q ss_pred             CCch--------HHHHhccccCcEEEEEec
Q psy8015         100 PRYP--------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       100 ~~~p--------~~l~~~LkpgG~lvi~~~  121 (165)
                      ++++        .++.+.|||||++++...
T Consensus       140 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  169 (287)
T 1kpg_A          140 EHFGHERYDAFFSLAHRLLPADGVMLLHTI  169 (287)
T ss_dssp             GGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             hhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            6652        357899999999998653

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.51  E-value=5.8e-14  Score=111.43  Aligned_cols=108  Identities=7%  Similarity=-0.079  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC--CCCCCC
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA--SFGDNG   88 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~--~~~~~~   88 (165)
                      .....+++.+. ..++.+|||+ ||+|.++..|++.+.+|+++|+|++|++.|+.+.... .+.....+...  .....+
T Consensus        32 ~~~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~~~~~~~~  109 (261)
T 3iv6_A           32 SDRENDIFLEN-IVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADR-CVTIDLLDITAEIPKELAG  109 (261)
T ss_dssp             CHHHHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSS-CCEEEECCTTSCCCGGGTT
T ss_pred             HHHHHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc-cceeeeeecccccccccCC
Confidence            45667777774 4789999999 9999999999999999999999999999997221111 23333333221  111246


Q ss_pred             CccEEEEcCCCCCch--------HHHHhccccCcEEEEEecC
Q psy8015          89 PYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        89 ~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~~~  122 (165)
                      +||+|+++...++++        ..+.+.| |||++++.+..
T Consensus       110 ~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A          110 HFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             CccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence            899999998877543        2466788 99999998764

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.51  E-value=6.3e-14  Score=106.84  Aligned_cols=96  Identities=13%  Similarity=0.021  Sum_probs=79.7

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCC-----CCeEEEEccCCCCCCCCCCccEEEEc
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDP-----DHDYDLIADGRASFGDNGPYDAIHVG   96 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~-----~nV~~~~gD~~~~~~~~~~fD~I~i~   96 (165)
                      .++.+|||+ ||+|.++..+++...+|+++|+++.+++.|+  .+..+.     .+++++.+|........++||+|++.
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  108 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ  108 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence            578999999 9999999999998889999999999999996  444443     36899999987644346789999999


Q ss_pred             CCCCCch---------HHHHhccccCcEEEEEe
Q psy8015          97 AAYPRYP---------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        97 ~~~~~~p---------~~l~~~LkpgG~lvi~~  120 (165)
                      ...++++         +.+.+.|||||++++..
T Consensus       109 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (235)
T 3sm3_A          109 AFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE  141 (235)
T ss_dssp             SCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            8877654         24679999999999974

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.51  E-value=1.5e-14  Score=114.71  Aligned_cols=107  Identities=15%  Similarity=0.017  Sum_probs=82.5

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccc------cCCCCCeEEEEccCCCCC--
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSS------TIDPDHDYDLIADGRASF--   84 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~------~~~~~nV~~~~gD~~~~~--   84 (165)
                      ...+.+.+.. .++.+|||| ||+|..+..+++...+|+++|+|++|++.|+.+      .....++.+..+|.....  
T Consensus        46 ~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  124 (293)
T 3thr_A           46 KAWLLGLLRQ-HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD  124 (293)
T ss_dssp             HHHHHHHHHH-TTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH
T ss_pred             HHHHHHHhcc-cCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccc
Confidence            3445555543 678999999 999999999999888999999999999999521      112357899999986532  


Q ss_pred             -CCCCCccEEEEc-CCCCCchH-------------HHHhccccCcEEEEEec
Q psy8015          85 -GDNGPYDAIHVG-AAYPRYPE-------------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        85 -~~~~~fD~I~i~-~~~~~~p~-------------~l~~~LkpgG~lvi~~~  121 (165)
                       ...++||+|++. ...+++++             ++.+.|||||++++.+.
T Consensus       125 ~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  176 (293)
T 3thr_A          125 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  176 (293)
T ss_dssp             SCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence             345789999997 56555433             57899999999998763

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.51  E-value=7.3e-14  Score=109.16  Aligned_cols=103  Identities=13%  Similarity=0.060  Sum_probs=81.7

Q ss_pred             HHHHHHHHhcC-CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCcc
Q psy8015          14 VAKYVTYLSGH-SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYD   91 (165)
Q Consensus        14 ~~~~l~~l~~~-~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD   91 (165)
                      ...+.+++... .++.+|||+ ||+|.++..+++...+|+++|+|+++++.|+.+   ..+++++.+|+.+. +..++||
T Consensus        37 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~---~~~~~~~~~d~~~~-~~~~~fD  112 (263)
T 3pfg_A           37 AADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRR---NPDAVLHHGDMRDF-SLGRRFS  112 (263)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHH---CTTSEEEECCTTTC-CCSCCEE
T ss_pred             HHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhh---CCCCEEEECChHHC-CccCCcC
Confidence            34444444322 457899999 999999999999888999999999999999733   23799999998763 3357899


Q ss_pred             EEEEcC-CCCCch---------HHHHhccccCcEEEEEe
Q psy8015          92 AIHVGA-AYPRYP---------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        92 ~I~i~~-~~~~~p---------~~l~~~LkpgG~lvi~~  120 (165)
                      +|++.. ..++++         ..+.+.|||||++++..
T Consensus       113 ~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          113 AVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP  151 (263)
T ss_dssp             EEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             EEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            999987 776663         25789999999999953

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.51  E-value=3.1e-15  Score=112.61  Aligned_cols=86  Identities=12%  Similarity=0.086  Sum_probs=54.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC-
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD-   86 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~-   86 (165)
                      .+..+++.+....++.+|||+ ||+|.++..+++..  .+|+++|+++++++.|+  ++..+. +++++++|+.+.+++ 
T Consensus        17 ~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~   95 (215)
T 4dzr_A           17 LVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLIER   95 (215)
T ss_dssp             HHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhhh
Confidence            455666666433678999999 99999999999985  48999999999999996  445555 899999998763332 


Q ss_pred             ---CCCccEEEEcCCC
Q psy8015          87 ---NGPYDAIHVGAAY   99 (165)
Q Consensus        87 ---~~~fD~I~i~~~~   99 (165)
                         .++||+|+++...
T Consensus        96 ~~~~~~fD~i~~npp~  111 (215)
T 4dzr_A           96 AERGRPWHAIVSNPPY  111 (215)
T ss_dssp             HHTTCCBSEEEECCCC
T ss_pred             hhccCcccEEEECCCC
Confidence               2789999997544

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.50  E-value=1.3e-14  Score=122.25  Aligned_cols=135  Identities=10%  Similarity=-0.034  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCC
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNG   88 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~   88 (165)
                      .+..++++++....++.+|||+ ||+|.++..+|+...+|+++|+++++++.|+  .+..+++ ++++.+|+.+.++.  
T Consensus       276 ~~~e~l~~~~~~~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~--  352 (425)
T 2jjq_A          276 YQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVK--  352 (425)
T ss_dssp             HHHHHHHHHHHHHCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCT--
T ss_pred             HHHHHHHHHhhccCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCcc--
Confidence            3445555555333678999999 9999999999998889999999999999996  4445666 99999999875443  


Q ss_pred             CccEEEEcCCCCCchH---HHHhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEeeeccC
Q psy8015          89 PYDAIHVGAAYPRYPE---IFIHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGLLYDV  155 (165)
Q Consensus        89 ~fD~I~i~~~~~~~p~---~l~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~  155 (165)
                      +||+|+++.......+   +....|+|+|++++.+++.+. ..+..+.      |....+..+++.|.+..
T Consensus       353 ~fD~Vv~dPPr~g~~~~~~~~l~~l~p~givyvsc~p~tlarDl~~l~------y~l~~~~~~DmFP~T~H  417 (425)
T 2jjq_A          353 GFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKMLD------YRIDEIVALDMFPHTPH  417 (425)
T ss_dssp             TCSEEEECCCTTCSCHHHHHHHHHHCCSEEEEEESCHHHHHHHHHHSS------CCEEEEEEECCSTTSSC
T ss_pred             CCCEEEEcCCccchHHHHHHHHHhcCCCcEEEEECChHHHHhHHhhCe------EEEEEEEEECcCCCCce
Confidence            8999999876544433   234568999999999875432 1111111      66777777777776653

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.50  E-value=1e-13  Score=104.75  Aligned_cols=101  Identities=13%  Similarity=0.007  Sum_probs=79.6

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIH   94 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~   94 (165)
                      +++..+.  .++.+|||+ ||+|.++..+  -..+|+++|+++++++.|+.+.   .+++++.+|+.+...+.++||+|+
T Consensus        28 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l--~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~~~~~~~~fD~v~  100 (211)
T 2gs9_A           28 RALKGLL--PPGESLLEVGAGTGYWLRRL--PYPQKVGVEPSEAMLAVGRRRA---PEATWVRAWGEALPFPGESFDVVL  100 (211)
T ss_dssp             HHHHTTC--CCCSEEEEETCTTCHHHHHC--CCSEEEEECCCHHHHHHHHHHC---TTSEEECCCTTSCCSCSSCEEEEE
T ss_pred             HHHHHhc--CCCCeEEEECCCCCHhHHhC--CCCeEEEEeCCHHHHHHHHHhC---CCcEEEEcccccCCCCCCcEEEEE
Confidence            3444442  378999999 9999999888  2238999999999999997432   679999999876433457899999


Q ss_pred             EcCCCCCch------HHHHhccccCcEEEEEecCC
Q psy8015          95 VGAAYPRYP------EIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        95 i~~~~~~~p------~~l~~~LkpgG~lvi~~~~~  123 (165)
                      +....++++      .++.+.|||||++++.....
T Consensus       101 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  135 (211)
T 2gs9_A          101 LFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEA  135 (211)
T ss_dssp             EESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             EcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            999888765      35789999999999987543

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.50  E-value=7.2e-14  Score=105.19  Aligned_cols=99  Identities=13%  Similarity=-0.039  Sum_probs=77.9

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCC-cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC-
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR-  101 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~-  101 (165)
                      .++.+|||+ ||+|.++..+++... +|+++|+++.+++.|+.+..+..+++++.+|+.+...+.++||+|++....+. 
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~  120 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDAL  120 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHH
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhhh
Confidence            678999999 999999999998764 89999999999999973222346899999998764333578999998655422 


Q ss_pred             --------------------chHHHHhccccCcEEEEEecCC
Q psy8015         102 --------------------YPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus       102 --------------------~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                                          +.+++.+.|||||++++.....
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          121 LAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             TTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             ccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence                                1235789999999999977543

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.50  E-value=7.7e-15  Score=116.54  Aligned_cols=99  Identities=16%  Similarity=0.098  Sum_probs=79.4

Q ss_pred             cCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC----CCCCccE
Q psy8015          23 GHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG----DNGPYDA   92 (165)
Q Consensus        23 ~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~----~~~~fD~   92 (165)
                      ...++++|||+ ||+|..|..++...   ++|+++|+++++++.++  +++.|.+|++++.+|+.+...    ..++||+
T Consensus        80 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~  159 (274)
T 3ajd_A           80 NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDK  159 (274)
T ss_dssp             CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCE
Confidence            45789999999 99999999999854   68999999999999986  667788899999999865322    1468999


Q ss_pred             EEEcCCCC------------------------CchHHHHhccccCcEEEEEec
Q psy8015          93 IHVGAAYP------------------------RYPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        93 I~i~~~~~------------------------~~p~~l~~~LkpgG~lvi~~~  121 (165)
                      |+++..+.                        .+.+.+.+.|||||++++...
T Consensus       160 Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc  212 (274)
T 3ajd_A          160 ILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC  212 (274)
T ss_dssp             EEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             EEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence            99985432                        122356789999999999754

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.49  E-value=1.4e-13  Score=110.64  Aligned_cols=95  Identities=12%  Similarity=0.079  Sum_probs=79.2

Q ss_pred             CCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      .++.+|||| ||+|.++..+++. ..+|+++|+++++++.|+  .+..++. +++++.+|..+. +  ++||+|++....
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--~~fD~v~~~~~l  165 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF-A--EPVDRIVSIEAF  165 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC-C--CCCSEEEEESCG
T ss_pred             CCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC-C--CCcCEEEEeChH
Confidence            688999999 9999999999987 569999999999999996  5555664 599999998653 3  689999999887


Q ss_pred             CCch--------HHHHhccccCcEEEEEecC
Q psy8015         100 PRYP--------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus       100 ~~~p--------~~l~~~LkpgG~lvi~~~~  122 (165)
                      ++++        +++.+.|||||++++....
T Consensus       166 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  196 (318)
T 2fk8_A          166 EHFGHENYDDFFKRCFNIMPADGRMTVQSSV  196 (318)
T ss_dssp             GGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             HhcCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            7663        2578999999999996643

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.49  E-value=3.8e-14  Score=113.29  Aligned_cols=94  Identities=13%  Similarity=0.083  Sum_probs=74.6

Q ss_pred             CCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCC------------------------------
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDP------------------------------   70 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~------------------------------   70 (165)
                      ++++|||| ||+|.++..+++..  .+|+++|+|+.|++.|+  ++..+.                              
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            68999999 99999999999874  69999999999999996  332221                              


Q ss_pred             ----------------------------CCeEEEEccCCCCC-----CCCCCccEEEEcCCCCCc------------hHH
Q psy8015          71 ----------------------------DHDYDLIADGRASF-----GDNGPYDAIHVGAAYPRY------------PEI  105 (165)
Q Consensus        71 ----------------------------~nV~~~~gD~~~~~-----~~~~~fD~I~i~~~~~~~------------p~~  105 (165)
                                                  .||+|+++|.....     ...++||+|++.....++            .+.
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                        48999999987543     235789999998876433            246


Q ss_pred             HHhccccCcEEEEE
Q psy8015         106 FIHHLKSGGRLVIP  119 (165)
Q Consensus       106 l~~~LkpgG~lvi~  119 (165)
                      +.+.|||||+|++.
T Consensus       206 ~~~~LkpGG~lil~  219 (292)
T 3g07_A          206 IYRHLRPGGILVLE  219 (292)
T ss_dssp             HHHHEEEEEEEEEE
T ss_pred             HHHHhCCCcEEEEe
Confidence            78999999999985

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.49  E-value=7.8e-14  Score=108.69  Aligned_cols=98  Identities=8%  Similarity=0.005  Sum_probs=77.4

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cc------cCCCCCeEEEEccCCCCCC---CCCCc
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SS------TIDPDHDYDLIADGRASFG---DNGPY   90 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~------~~~~~nV~~~~gD~~~~~~---~~~~f   90 (165)
                      .++.+|||| ||+|.++..||+..  ..|+++|++++|++.|+  ++      ..+..|++++.+|+...++   +.++|
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            467899999 99999999999875  47999999999999885  22      2467899999999976332   35789


Q ss_pred             cEEEEcCCCCC--------------chHHHHhccccCcEEEEEecC
Q psy8015          91 DAIHVGAAYPR--------------YPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        91 D~I~i~~~~~~--------------~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      |.|++....+.              +.+.+.+.|||||++++....
T Consensus       125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~  170 (235)
T 3ckk_A          125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV  170 (235)
T ss_dssp             EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence            99999765432              335678999999999997654

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.49  E-value=1.3e-13  Score=101.94  Aligned_cols=98  Identities=14%  Similarity=0.050  Sum_probs=76.9

Q ss_pred             HHHHHHHHhc-CCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCcc
Q psy8015          14 VAKYVTYLSG-HSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYD   91 (165)
Q Consensus        14 ~~~~l~~l~~-~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD   91 (165)
                      ...+++++.. ..++.+|||+ ||+|.++..+++.. +|+++|+|++|++.       ..|++++++|+.+.++ .++||
T Consensus        10 ~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~-------~~~~~~~~~d~~~~~~-~~~fD   80 (170)
T 3q87_B           10 TYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES-------HRGGNLVRADLLCSIN-QESVD   80 (170)
T ss_dssp             HHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT-------CSSSCEEECSTTTTBC-GGGCS
T ss_pred             HHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc-------ccCCeEEECChhhhcc-cCCCC
Confidence            3445555432 1467899999 99999999999988 99999999999986       3579999999987544 37899


Q ss_pred             EEEEcCCCCC---------------chHHHHhccccCcEEEEEec
Q psy8015          92 AIHVGAAYPR---------------YPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        92 ~I~i~~~~~~---------------~p~~l~~~LkpgG~lvi~~~  121 (165)
                      +|+++.....               +...+.+.| |||++++...
T Consensus        81 ~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~  124 (170)
T 3q87_B           81 VVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVI  124 (170)
T ss_dssp             EEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEE
T ss_pred             EEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEe
Confidence            9999866542               124677788 9999999764

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.48  E-value=1.8e-13  Score=122.75  Aligned_cols=108  Identities=6%  Similarity=-0.095  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cc------cCCCCCeEEEEcc
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SS------TIDPDHDYDLIAD   79 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~------~~~~~nV~~~~gD   79 (165)
                      .....+++.+.. .++.+|||| ||+|+++..|++..   .+|+++|++++|++.|+  ++      +.+..|++++++|
T Consensus       708 qRle~LLelL~~-~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGD  786 (950)
T 3htx_A          708 QRVEYALKHIRE-SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGS  786 (950)
T ss_dssp             HHHHHHHHHHHH-SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESC
T ss_pred             HHHHHHHHHhcc-cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECc
Confidence            345566777754 588999999 99999999999987   69999999999999995  22      3366789999999


Q ss_pred             CCCCCCCCCCccEEEEcCCCCCchH--------HHHhccccCcEEEEEec
Q psy8015          80 GRASFGDNGPYDAIHVGAAYPRYPE--------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        80 ~~~~~~~~~~fD~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~~  121 (165)
                      +.+.....++||+|++....+++++        .+.+.|||| .+++...
T Consensus       787 a~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTP  835 (950)
T 3htx_A          787 ILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTP  835 (950)
T ss_dssp             TTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred             hHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence            9875555689999999999988764        458999999 7777654

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.48  E-value=3.3e-14  Score=119.83  Aligned_cols=137  Identities=10%  Similarity=-0.004  Sum_probs=99.5

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC----
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD----   86 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~----   86 (165)
                      +..+++++. ..++.+|||+ ||+|.++..||+...+|+++|+|+++++.|+  .+..+++|++|+.+|+.+.++.    
T Consensus       275 ~~~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~  353 (433)
T 1uwv_A          275 VARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA  353 (433)
T ss_dssp             HHHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGG
T ss_pred             HHHHHHhhc-CCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhh
Confidence            445555653 3678999999 9999999999999889999999999999996  5556788999999999774432    


Q ss_pred             CCCccEEEEcCCCCCchHH--HHhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEeeecc
Q psy8015          87 NGPYDAIHVGAAYPRYPEI--FIHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGLLYD  154 (165)
Q Consensus        87 ~~~fD~I~i~~~~~~~p~~--l~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~pl~~  154 (165)
                      .++||+|+++.......+.  ....++|++.+++.++..+. ..+..+.+   .+|....+..+++.|.+.
T Consensus       354 ~~~fD~Vv~dPPr~g~~~~~~~l~~~~p~~ivyvsc~p~tlard~~~l~~---~Gy~~~~~~~~d~Fp~t~  421 (433)
T 1uwv_A          354 KNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLK---AGYTIARLAMLDMFPHTG  421 (433)
T ss_dssp             TTCCSEEEECCCTTCCHHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHH---TTCEEEEEEEECCSTTSS
T ss_pred             cCCCCEEEECCCCccHHHHHHHHHhcCCCeEEEEECChHHHHhhHHHHHH---CCcEEEEEEEeccCCCCC
Confidence            3579999998766544331  22346899998888875442 22222222   247777777777766554

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.48  E-value=1.9e-13  Score=105.92  Aligned_cols=95  Identities=12%  Similarity=0.007  Sum_probs=75.5

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC-C
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY-P  100 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~-~  100 (165)
                      .++.+|||+ ||+|..+..+++...+|+++|+|++|++.|+  .+..+. +++++.+|..+. +..++||+|++.... +
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~-~~~~~fD~v~~~~~~~~  117 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEI-AFKNEFDAVTMFFSTIM  117 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGC-CCCSCEEEEEECSSGGG
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhc-ccCCCccEEEEcCCchh
Confidence            467899999 9999999999988789999999999999996  444444 799999998763 334689999986432 2


Q ss_pred             Cch--------HHHHhccccCcEEEEEec
Q psy8015         101 RYP--------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       101 ~~p--------~~l~~~LkpgG~lvi~~~  121 (165)
                      ..+        +.+.+.|||||++++.+.
T Consensus       118 ~~~~~~~~~~l~~~~~~L~pgG~li~~~~  146 (252)
T 1wzn_A          118 YFDEEDLRKLFSKVAEALKPGGVFITDFP  146 (252)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence            221        356889999999998654

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.48  E-value=1.4e-13  Score=107.97  Aligned_cols=109  Identities=7%  Similarity=-0.043  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHH------HHHhcc--cccCCC-CCeEEEEc
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYY------LSGGPL--SSTIDP-DHDYDLIA   78 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~------~~~~A~--~~~~~~-~nV~~~~g   78 (165)
                      ....++++.+. ..++.+|||| ||+|+++..+++..   .+|+++|++++      +++.|+  ++..+. +|++++.+
T Consensus        30 ~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~  108 (275)
T 3bkx_A           30 AHRLAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFN  108 (275)
T ss_dssp             HHHHHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECS
T ss_pred             HHHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEEC
Confidence            34456667664 4789999999 99999999999875   68999999997      899886  555555 57999999


Q ss_pred             c---CCCCCCCCCCccEEEEcCCCCCchH------HHHhccccCcEEEEEec
Q psy8015          79 D---GRASFGDNGPYDAIHVGAAYPRYPE------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        79 D---~~~~~~~~~~fD~I~i~~~~~~~p~------~l~~~LkpgG~lvi~~~  121 (165)
                      |   ......+.++||+|++....+++++      .+..+++|||++++...
T Consensus       109 d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~  160 (275)
T 3bkx_A          109 TNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEW  160 (275)
T ss_dssp             CCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred             ChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence            8   2221113478999999988876652      33455566999999653

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.48  E-value=1.7e-13  Score=109.55  Aligned_cols=109  Identities=12%  Similarity=0.080  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCCC
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFGD   86 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~~   86 (165)
                      ..+..+++++.. .++.+|||+ ||+|.++..+++. ..+|+++|+|+++++.|+  .+..+++| ++++++|..+..+ 
T Consensus       110 ~lv~~~l~~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~-  187 (284)
T 1nv8_A          110 ELVELALELIRK-YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK-  187 (284)
T ss_dssp             HHHHHHHHHHHH-HTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG-
T ss_pred             HHHHHHHHHhcc-cCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc-
Confidence            445566666642 467899999 9999999999988 568999999999999996  56677775 9999999977443 


Q ss_pred             CCCc---cEEEEcCCCC-----------C--------------chHHHH-hccccCcEEEEEecCC
Q psy8015          87 NGPY---DAIHVGAAYP-----------R--------------YPEIFI-HHLKSGGRLVIPIGDT  123 (165)
Q Consensus        87 ~~~f---D~I~i~~~~~-----------~--------------~p~~l~-~~LkpgG~lvi~~~~~  123 (165)
                       ++|   |+|+++..+.           +              +-..+. +.|+|||++++.++..
T Consensus       188 -~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~  252 (284)
T 1nv8_A          188 -EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED  252 (284)
T ss_dssp             -GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT
T ss_pred             -cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECch
Confidence             478   9999973321           1              123577 9999999999988754

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.48  E-value=2.1e-13  Score=104.68  Aligned_cols=94  Identities=13%  Similarity=0.072  Sum_probs=75.9

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcC-CCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGA-AYP  100 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~-~~~  100 (165)
                      .++.+|||+ ||+|.++..+++. .+|+++|+++++++.|+  .+..+ .+++++.+|..+... .++||+|++.. ..+
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~~  108 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELEL-PEPVDAITILCDSLN  108 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCC-SSCEEEEEECTTGGG
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCC-CCCcCEEEEeCCchh
Confidence            567999999 9999999999988 89999999999999996  33334 579999999876433 37899999975 555


Q ss_pred             Cch---------HHHHhccccCcEEEEEec
Q psy8015         101 RYP---------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       101 ~~p---------~~l~~~LkpgG~lvi~~~  121 (165)
                      +++         ..+.+.|||||++++.+.
T Consensus       109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  138 (243)
T 3d2l_A          109 YLQTEADVKQTFDSAARLLTDGGKLLFDVH  138 (243)
T ss_dssp             GCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence            441         356789999999998654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.47  E-value=9.4e-14  Score=111.28  Aligned_cols=97  Identities=14%  Similarity=-0.028  Sum_probs=79.3

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhcc---CCcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCCCCCCccEEEEc
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTF---IPNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFGDNGPYDAIHVG   96 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~~~~~fD~I~i~   96 (165)
                      ..++.+|||| ||+|..+..++..   ..+|+++|+++.+++.|+  .+..+..+ ++++.+|+.+...+ ++||+|++.
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~  194 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSN  194 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEEC
Confidence            3789999999 9999999999632   358999999999999996  55666654 99999999774333 899999998


Q ss_pred             CCCCCch---------HHHHhccccCcEEEEEec
Q psy8015          97 AAYPRYP---------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        97 ~~~~~~p---------~~l~~~LkpgG~lvi~~~  121 (165)
                      ...++++         +++.+.|||||++++...
T Consensus       195 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  228 (305)
T 3ocj_A          195 GLNIYEPDDARVTELYRRFWQALKPGGALVTSFL  228 (305)
T ss_dssp             SSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             ChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            8776553         356789999999999763

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.47  E-value=4.5e-14  Score=110.95  Aligned_cols=113  Identities=13%  Similarity=0.085  Sum_probs=82.6

Q ss_pred             EEecCCchHH--HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEc
Q psy8015           4 VFVSGSVSGA--VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIA   78 (165)
Q Consensus         4 ~~~~~~~~~~--~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~g   78 (165)
                      .|+++.-+..  ..++++..  ..++.+|||+ ||+|.++..+++...+|+++|+|+.+++.|+  .+..+.+ ++++.+
T Consensus        98 ~fgtg~~~tt~~~~~~l~~~--~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~  174 (254)
T 2nxc_A           98 AFGTGHHETTRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVR-PRFLEG  174 (254)
T ss_dssp             ----CCSHHHHHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCC-CEEEES
T ss_pred             cccCCCCHHHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCc-EEEEEC
Confidence            3666664433  22333333  3678999999 9999999999988779999999999999996  4445555 999999


Q ss_pred             cCCCCCCCCCCccEEEEcCCCCC---chHHHHhccccCcEEEEEe
Q psy8015          79 DGRASFGDNGPYDAIHVGAAYPR---YPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        79 D~~~~~~~~~~fD~I~i~~~~~~---~p~~l~~~LkpgG~lvi~~  120 (165)
                      |..+.++ .++||+|+++...+.   +.+.+.+.|||||++++..
T Consensus       175 d~~~~~~-~~~fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~  218 (254)
T 2nxc_A          175 SLEAALP-FGPFDLLVANLYAELHAALAPRYREALVPGGRALLTG  218 (254)
T ss_dssp             CHHHHGG-GCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ChhhcCc-CCCCCEEEECCcHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            9866433 468999998754433   3356789999999999853

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.47  E-value=7.4e-14  Score=115.36  Aligned_cols=136  Identities=9%  Similarity=-0.029  Sum_probs=100.6

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC---CCC
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF---GDN   87 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~---~~~   87 (165)
                      ...+++++.  ..+.+|||+ ||+|.++..+|+.+.+|+++|+++++++.|+  ++..|++|++++.+|+.+.+   ...
T Consensus       203 ~~~~~~~~~--~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~  280 (369)
T 3bt7_A          203 LEWALDVTK--GSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGV  280 (369)
T ss_dssp             HHHHHHHTT--TCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSC
T ss_pred             HHHHHHHhh--cCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhc
Confidence            444455543  236899999 9999999999998899999999999999996  56667889999999986532   111


Q ss_pred             -------------CCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCC-c-eEEEEEEEccCCcEEEEEeeeEEEeee
Q psy8015          88 -------------GPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTK-Q-QMLTIYDKFHNGTIDIQHWGVVQVGLL  152 (165)
Q Consensus        88 -------------~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~-~-~~~~~~~k~~~~~~~~~~l~~~~~~pl  152 (165)
                                   .+||+|+++.....+.+.+.+.|+++|+++....... . ..+..+.   . .|....+..+++.|.
T Consensus       281 ~~~~~l~~~~~~~~~fD~Vv~dPPr~g~~~~~~~~l~~~g~ivyvsc~p~t~ard~~~l~---~-~y~~~~~~~~D~FP~  356 (369)
T 3bt7_A          281 REFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLS---Q-THKVERLALFDQFPY  356 (369)
T ss_dssp             CCCTTGGGSCGGGCCEEEEEECCCTTCCCHHHHHHHTTSSEEEEEESCHHHHHHHHHHHH---H-HEEEEEEEEECCSTT
T ss_pred             cccccccccccccCCCCEEEECcCccccHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHh---h-CcEEEEEEeeccCCC
Confidence                         3799999988776677778899999999888654321 1 1222221   1 388888888887777


Q ss_pred             ccC
Q psy8015         153 YDV  155 (165)
Q Consensus       153 ~~~  155 (165)
                      +.+
T Consensus       357 T~H  359 (369)
T 3bt7_A          357 THH  359 (369)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            653

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.47  E-value=2.2e-13  Score=107.38  Aligned_cols=107  Identities=9%  Similarity=-0.004  Sum_probs=80.9

Q ss_pred             HHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--ccc---CCCC-CeEEEEccCCCCC---
Q psy8015          17 YVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SST---IDPD-HDYDLIADGRASF---   84 (165)
Q Consensus        17 ~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~---~~~~-nV~~~~gD~~~~~---   84 (165)
                      ++.......++.+|||+ ||+|.++..+++..  .+|+++|+++++++.|+  ++.   .++. +++++++|..+..   
T Consensus        27 lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~  106 (260)
T 2ozv_A           27 LLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKAR  106 (260)
T ss_dssp             HHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHH
T ss_pred             HHHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhh
Confidence            34433334678899999 99999999999876  58999999999999996  555   5665 5999999987641   


Q ss_pred             ----CCCCCccEEEEcCCCCC------------------------chHHHHhccccCcEEEEEecCC
Q psy8015          85 ----GDNGPYDAIHVGAAYPR------------------------YPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        85 ----~~~~~fD~I~i~~~~~~------------------------~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                          ...++||+|+++..+..                        +.+.+.+.|||||++++..+..
T Consensus       107 ~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  173 (260)
T 2ozv_A          107 VEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ  173 (260)
T ss_dssp             HHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred             hhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH
Confidence                12468999999843321                        1234578999999999987643

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.47  E-value=4.8e-14  Score=120.50  Aligned_cols=99  Identities=15%  Similarity=0.046  Sum_probs=79.0

Q ss_pred             cCC--CCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC-CCCCccEE
Q psy8015          23 GHS--KRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG-DNGPYDAI   93 (165)
Q Consensus        23 ~~~--~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~-~~~~fD~I   93 (165)
                      ...  ++++|||+ ||+|..|..+|...   ++|+++|+++++++.++  ++++|+.|++++++|+..... ..+.||+|
T Consensus       112 ~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~I  191 (479)
T 2frx_A          112 FADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAI  191 (479)
T ss_dssp             TTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEE
T ss_pred             CcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEE
Confidence            346  89999999 99999999999875   68999999999999996  667788899999999875321 24689999


Q ss_pred             EEcCCCC------Cc----------------------hHHHHhccccCcEEEEEec
Q psy8015          94 HVGAAYP------RY----------------------PEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        94 ~i~~~~~------~~----------------------p~~l~~~LkpgG~lvi~~~  121 (165)
                      ++++.+.      ..                      .+.+.+.|||||+|+....
T Consensus       192 l~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc  247 (479)
T 2frx_A          192 LLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC  247 (479)
T ss_dssp             EEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             EECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence            9975542      11                      1235689999999998653

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.47  E-value=1.1e-13  Score=109.43  Aligned_cols=108  Identities=16%  Similarity=0.067  Sum_probs=83.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCC
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDN   87 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~   87 (165)
                      .+..+++.+.  .++.+|||+ ||+|..+..+++.  ..+|+++|+|+++++.|+  .+..+.+|++++++|..+..+ .
T Consensus        98 l~~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~-~  174 (276)
T 2b3t_A           98 LVEQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA-G  174 (276)
T ss_dssp             HHHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT-T
T ss_pred             HHHHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc-c
Confidence            3445555542  567899999 9999999999976  358999999999999996  555677789999999877543 4


Q ss_pred             CCccEEEEcCCCCC-------------------------------chHHHHhccccCcEEEEEecCC
Q psy8015          88 GPYDAIHVGAAYPR-------------------------------YPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        88 ~~fD~I~i~~~~~~-------------------------------~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      ++||+|+++..+..                               +.+.+.+.|+|||++++..+..
T Consensus       175 ~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~  241 (276)
T 2b3t_A          175 QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ  241 (276)
T ss_dssp             CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS
T ss_pred             CCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECch
Confidence            68999999843311                               1135678999999999987644

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.47  E-value=5.3e-13  Score=98.65  Aligned_cols=104  Identities=13%  Similarity=0.065  Sum_probs=82.4

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEE
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAI   93 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I   93 (165)
                      .++++.+.  .++.+|||+ ||+|.++..+++...+|+++|+++++++.|+.+   ..+++++.+|..+...+.++||+|
T Consensus        37 ~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~---~~~~~~~~~d~~~~~~~~~~~D~i  111 (195)
T 3cgg_A           37 ARLIDAMA--PRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQD---FPEARWVVGDLSVDQISETDFDLI  111 (195)
T ss_dssp             HHHHHHHS--CTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHH---CTTSEEEECCTTTSCCCCCCEEEE
T ss_pred             HHHHHHhc--cCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHh---CCCCcEEEcccccCCCCCCceeEE
Confidence            45666663  688999999 999999999998888999999999999999732   246999999987643335789999


Q ss_pred             EEcC-CCCCch--------HHHHhccccCcEEEEEecCC
Q psy8015          94 HVGA-AYPRYP--------EIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        94 ~i~~-~~~~~p--------~~l~~~LkpgG~lvi~~~~~  123 (165)
                      ++.+ ..++++        +.+.+.|+|||++++.....
T Consensus       112 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~  150 (195)
T 3cgg_A          112 VSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG  150 (195)
T ss_dssp             EECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             EECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            9984 444432        35689999999999987654

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.47  E-value=1.1e-13  Score=106.05  Aligned_cols=110  Identities=15%  Similarity=0.073  Sum_probs=81.9

Q ss_pred             chHHHHHHHHHHhc--CCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCC
Q psy8015          10 VSGAVAKYVTYLSG--HSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGR   81 (165)
Q Consensus        10 ~~~~~~~~l~~l~~--~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~   81 (165)
                      -+...+.++..+..  ..++++|||+ ||+|.++..+++..   ++|+++|+++++++.++  .+.  .+|++++.+|+.
T Consensus        55 ~~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~--~~~v~~~~~d~~  132 (227)
T 1g8a_A           55 RSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE--RRNIVPILGDAT  132 (227)
T ss_dssp             TCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS--CTTEEEEECCTT
T ss_pred             chhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc--cCCCEEEEccCC
Confidence            34444555333321  3678999999 99999999999763   68999999999998885  332  268999999987


Q ss_pred             CCC---CCCCCccEEEEcCCCCCc----hHHHHhccccCcEEEEEec
Q psy8015          82 ASF---GDNGPYDAIHVGAAYPRY----PEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        82 ~~~---~~~~~fD~I~i~~~~~~~----p~~l~~~LkpgG~lvi~~~  121 (165)
                      +..   +..++||+|+++...+..    ...+.+.|||||++++...
T Consensus       133 ~~~~~~~~~~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  179 (227)
T 1g8a_A          133 KPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVK  179 (227)
T ss_dssp             CGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CcchhhcccCCceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            621   123589999998764433    3457899999999999753

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.46  E-value=2e-13  Score=103.42  Aligned_cols=102  Identities=16%  Similarity=0.040  Sum_probs=81.2

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC----CCCCCC
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS----FGDNGP   89 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~----~~~~~~   89 (165)
                      ..+++.+.. .++.+|||+ ||+|.++..+++...+|+++|+++.+++.|+.+    .+++++.+|....    .....+
T Consensus        42 ~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~  116 (227)
T 3e8s_A           42 QAILLAILG-RQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA----GAGEVHLASYAQLAEAKVPVGKD  116 (227)
T ss_dssp             HHHHHHHHH-TCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT----CSSCEEECCHHHHHTTCSCCCCC
T ss_pred             HHHHHHhhc-CCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh----cccccchhhHHhhcccccccCCC
Confidence            456666654 577999999 999999999999888999999999999999743    4678888886542    233456


Q ss_pred             ccEEEEcCCCCC-----chHHHHhccccCcEEEEEec
Q psy8015          90 YDAIHVGAAYPR-----YPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        90 fD~I~i~~~~~~-----~p~~l~~~LkpgG~lvi~~~  121 (165)
                      ||+|++....+.     +...+.+.|||||++++...
T Consensus       117 fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          117 YDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTL  153 (227)
T ss_dssp             EEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEec
Confidence            999999887761     22467899999999999765

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.46  E-value=4.1e-13  Score=106.03  Aligned_cols=98  Identities=9%  Similarity=0.089  Sum_probs=79.3

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCC-cEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCC-CCCCccEEEEcCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFG-DNGPYDAIHVGAA   98 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~-~~~~fD~I~i~~~   98 (165)
                      .++.+|||+ ||+|..+..+++... +|+++|+++++++.|+  .+..+. .+++++.+|+.+... ..++||+|++...
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  142 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS  142 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence            688999999 999999998888754 8999999999999996  444454 469999999876422 4578999999887


Q ss_pred             CCC----ch------HHHHhccccCcEEEEEecC
Q psy8015          99 YPR----YP------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        99 ~~~----~p------~~l~~~LkpgG~lvi~~~~  122 (165)
                      .++    .+      ..+.+.|||||++++....
T Consensus       143 l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  176 (298)
T 1ri5_A          143 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  176 (298)
T ss_dssp             GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            754    22      3578999999999998754

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.45  E-value=6.3e-14  Score=114.59  Aligned_cols=111  Identities=10%  Similarity=-0.054  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCC--eEEEEccCCCCCCC
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDH--DYDLIADGRASFGD   86 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~n--V~~~~gD~~~~~~~   86 (165)
                      .....+.+.+....++.+|||+ ||+|.++..+++...+|+++|+|+++++.|+  ++..++++  ++++++|+.+..+.
T Consensus       139 ~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~  218 (332)
T 2igt_A          139 VHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQR  218 (332)
T ss_dssp             HHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHH
Confidence            3344566666422567899999 9999999999987679999999999999996  45556664  99999998653321


Q ss_pred             ----CCCccEEEEcCCC-C---------------CchHHHHhccccCcEEEEEecC
Q psy8015          87 ----NGPYDAIHVGAAY-P---------------RYPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        87 ----~~~fD~I~i~~~~-~---------------~~p~~l~~~LkpgG~lvi~~~~  122 (165)
                          ..+||+|+++... .               .+...+.+.|+|||++++.+..
T Consensus       219 ~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~  274 (332)
T 2igt_A          219 EERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  274 (332)
T ss_dssp             HHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             HHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence                3589999997542 1               1123467899999998876643

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.45  E-value=6.8e-13  Score=103.94  Aligned_cols=94  Identities=15%  Similarity=0.068  Sum_probs=77.5

Q ss_pred             CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR  101 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~  101 (165)
                      .++.+|||+ ||+|.++..+++.  ..+|+++|+++++++.|+.+   ..+++++.+|+.+.....++||+|++... +.
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-~~  159 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR---YPQVTFCVASSHRLPFSDTSMDAIIRIYA-PC  159 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH---CTTSEEEECCTTSCSBCTTCEEEEEEESC-CC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHh---CCCcEEEEcchhhCCCCCCceeEEEEeCC-hh
Confidence            578999999 9999999999987  46899999999999999633   25789999998653334578999998665 45


Q ss_pred             chHHHHhccccCcEEEEEecC
Q psy8015         102 YPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus       102 ~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      ..+++.+.|||||++++....
T Consensus       160 ~l~~~~~~L~pgG~l~~~~~~  180 (269)
T 1p91_A          160 KAEELARVVKPGGWVITATPG  180 (269)
T ss_dssp             CHHHHHHHEEEEEEEEEEEEC
T ss_pred             hHHHHHHhcCCCcEEEEEEcC
Confidence            567889999999999998754

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.45  E-value=2e-13  Score=106.37  Aligned_cols=98  Identities=9%  Similarity=0.036  Sum_probs=78.2

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccC--------CCCCeEEEEccCCCCCC---CCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTI--------DPDHDYDLIADGRASFG---DNG   88 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~--------~~~nV~~~~gD~~~~~~---~~~   88 (165)
                      .++.+|||| ||+|.++..+++..  .+|+++|+++.+++.|+  ++..        +++|++++.+|+.+.++   +.+
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~  127 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG  127 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence            467899999 99999999999876  37999999999999985  3332        67899999999876332   357


Q ss_pred             CccEEEEcCCCCC--------------chHHHHhccccCcEEEEEecC
Q psy8015          89 PYDAIHVGAAYPR--------------YPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        89 ~fD~I~i~~~~~~--------------~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      .||.|++....+.              +...+.+.|+|||++++....
T Consensus       128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~  175 (246)
T 2vdv_E          128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV  175 (246)
T ss_dssp             CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence            8999998755442              345678999999999997543

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.44  E-value=2e-13  Score=115.54  Aligned_cols=109  Identities=14%  Similarity=0.126  Sum_probs=83.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC-
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG-   85 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~-   85 (165)
                      ....+...+....++++|||+ ||+|..|..++...   ++|+++|+++.+++.++  ++++|.+|++++++|+....+ 
T Consensus       246 ~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~  325 (450)
T 2yxl_A          246 EASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI  325 (450)
T ss_dssp             HHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS
T ss_pred             chhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh
Confidence            333444443345889999999 99999999999875   58999999999999986  677788899999999876432 


Q ss_pred             -CCCCccEEEEcCCCC------C----------------------chHHHHhccccCcEEEEEec
Q psy8015          86 -DNGPYDAIHVGAAYP------R----------------------YPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        86 -~~~~fD~I~i~~~~~------~----------------------~p~~l~~~LkpgG~lvi~~~  121 (165)
                       +.++||+|+++..+.      .                      +.+.+.+.|||||++++...
T Consensus       326 ~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tc  390 (450)
T 2yxl_A          326 IGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTC  390 (450)
T ss_dssp             SCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred             hccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence             126799999975432      1                      12346789999999998654

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.44  E-value=1.6e-13  Score=105.81  Aligned_cols=111  Identities=15%  Similarity=0.137  Sum_probs=80.8

Q ss_pred             chHHHHHHHHHHh--cCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCC
Q psy8015          10 VSGAVAKYVTYLS--GHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGR   81 (165)
Q Consensus        10 ~~~~~~~~l~~l~--~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~   81 (165)
                      ++...+.+...+.  ...++.+|||+ ||+|.++..+++..   ++|+++|+++++++.+.  .+..  .|++++.+|+.
T Consensus        59 ~~~~~~~~~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~  136 (233)
T 2ipx_A           59 RSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDAR  136 (233)
T ss_dssp             TCHHHHHHHTTCSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTT
T ss_pred             chhHHHHHHhHHheecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccC
Confidence            4444445543232  23678999999 99999999999874   68999999988776653  2221  68999999987


Q ss_pred             CC--CC-CCCCccEEEEcCCCCCc----hHHHHhccccCcEEEEEecC
Q psy8015          82 AS--FG-DNGPYDAIHVGAAYPRY----PEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        82 ~~--~~-~~~~fD~I~i~~~~~~~----p~~l~~~LkpgG~lvi~~~~  122 (165)
                      +.  ++ ..++||+|+++...+..    ...+.+.|||||++++.+..
T Consensus       137 ~~~~~~~~~~~~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~~~~  184 (233)
T 2ipx_A          137 HPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKA  184 (233)
T ss_dssp             CGGGGGGGCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             ChhhhcccCCcEEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEEEcc
Confidence            63  12 24689999997764432    23578899999999997653

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.44  E-value=2.7e-13  Score=108.47  Aligned_cols=107  Identities=9%  Similarity=-0.024  Sum_probs=84.8

Q ss_pred             CchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCC
Q psy8015           9 SVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRAS   83 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~   83 (165)
                      .......++.+++   ++|++|||+ ||+|++|..+|+.. .+|+++|+||.+++.++  ++..++++ ++++++|+.+.
T Consensus       111 ~~~~er~ri~~~~---~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~  187 (278)
T 3k6r_A          111 ANVKERVRMAKVA---KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF  187 (278)
T ss_dssp             GGHHHHHHHHHHC---CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC
T ss_pred             CcHHHHHHHHHhc---CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHh
Confidence            3555566776664   689999999 99999999999876 58999999999999996  66667765 99999999764


Q ss_pred             CCCCCCccEEEEcCCCC--CchHHHHhccccCcEEEEE
Q psy8015          84 FGDNGPYDAIHVGAAYP--RYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        84 ~~~~~~fD~I~i~~~~~--~~p~~l~~~LkpgG~lvi~  119 (165)
                       ...+.||.|+++....  ..-+...+.|||||.+.+-
T Consensus       188 -~~~~~~D~Vi~~~p~~~~~~l~~a~~~lk~gG~ih~~  224 (278)
T 3k6r_A          188 -PGENIADRILMGYVVRTHEFIPKALSIAKDGAIIHYH  224 (278)
T ss_dssp             -CCCSCEEEEEECCCSSGGGGHHHHHHHEEEEEEEEEE
T ss_pred             -ccccCCCEEEECCCCcHHHHHHHHHHHcCCCCEEEEE
Confidence             4457899999975432  3335667999999998653

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.44  E-value=2.4e-13  Score=112.66  Aligned_cols=96  Identities=8%  Similarity=-0.040  Sum_probs=78.5

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--ccc--------CCCCCeEEEEccCCCC------C
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SST--------IDPDHDYDLIADGRAS------F   84 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~--------~~~~nV~~~~gD~~~~------~   84 (165)
                      .++.+|||+ ||+|..+..+++..   .+|+++|+++++++.|+  ++.        ....|++++.+|+.+.      .
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            478999999 99999999999864   48999999999999996  221        3336899999998763      2


Q ss_pred             CCCCCccEEEEcCCCCCch------HHHHhccccCcEEEEEe
Q psy8015          85 GDNGPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        85 ~~~~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~  120 (165)
                      .+.++||+|+++...++++      .++.+.|||||++++..
T Consensus       162 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~  203 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSD  203 (383)
T ss_dssp             CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            3357899999998877654      46789999999999964

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.43  E-value=2.3e-13  Score=114.25  Aligned_cols=108  Identities=11%  Similarity=-0.016  Sum_probs=83.5

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhccc---------ccCCC--CCeEE
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLS---------STIDP--DHDYD   75 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~---------~~~~~--~nV~~   75 (165)
                      .+..+.++++.+. +.++++|||| ||+|.++..+|...  .+|+++|+++++++.|+.         +..|+  .+|+|
T Consensus       158 ~~~~i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVef  236 (438)
T 3uwp_A          158 SFDLVAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL  236 (438)
T ss_dssp             HHHHHHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEE
T ss_pred             CHHHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEE
Confidence            4566788888884 5899999999 99999999998754  369999999999999851         22354  58999


Q ss_pred             EEccCCCCCCCC--CCccEEEEcCCCCCch------HHHHhccccCcEEEEE
Q psy8015          76 LIADGRASFGDN--GPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        76 ~~gD~~~~~~~~--~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~  119 (165)
                      ++||+.+.....  ..||+||++.... .+      .++++.|||||++|+.
T Consensus       237 i~GD~~~lp~~d~~~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvLKPGGrIVss  287 (438)
T 3uwp_A          237 ERGDFLSEEWRERIANTSVIFVNNFAF-GPEVDHQLKERFANMKEGGRIVSS  287 (438)
T ss_dssp             EECCTTSHHHHHHHHTCSEEEECCTTC-CHHHHHHHHHHHTTSCTTCEEEES
T ss_pred             EECcccCCccccccCCccEEEEccccc-CchHHHHHHHHHHcCCCCcEEEEe
Confidence            999987632111  4799999976542 22      2568999999999985

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.43  E-value=6.7e-14  Score=109.07  Aligned_cols=94  Identities=9%  Similarity=-0.077  Sum_probs=72.2

Q ss_pred             CCCeEEEE-ccccHHHHHHhcc----CCcEEEEeCCHHHHHhcc--cccC---CCCC-----------------------
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTF----IPNSFNINVYYYLSGGPL--SSTI---DPDH-----------------------   72 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~--~~~~---~~~n-----------------------   72 (165)
                      ++.+|||+ ||+|.++..+++.    ..+|+++|+|+++++.|+  ++..   ++.+                       
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            57899999 9999999999986    358999999999999997  3333   3322                       


Q ss_pred             ---eE-------------EEEccCCCCCC-----CCCCccEEEEcCCCC---------------CchHHHHhccccCcEE
Q psy8015          73 ---DY-------------DLIADGRASFG-----DNGPYDAIHVGAAYP---------------RYPEIFIHHLKSGGRL  116 (165)
Q Consensus        73 ---V~-------------~~~gD~~~~~~-----~~~~fD~I~i~~~~~---------------~~p~~l~~~LkpgG~l  116 (165)
                         ++             ++++|..+..+     ...+||+|+++....               .+.+.+.+.|+|||++
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  210 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI  210 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence               67             99999876542     334899999975332               1224578999999999


Q ss_pred             EEE
Q psy8015         117 VIP  119 (165)
Q Consensus       117 vi~  119 (165)
                      ++.
T Consensus       211 ~~~  213 (250)
T 1o9g_A          211 AVT  213 (250)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            983

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.42  E-value=1e-12  Score=104.55  Aligned_cols=110  Identities=13%  Similarity=0.065  Sum_probs=82.8

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccc---cHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC---
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSN---TKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS---   83 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~Gs---G~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~---   83 (165)
                      ...++++.+....+..+|||| ||+   |.++..+++..  .+|+++|+|+.|++.||.+.....+++++.+|..+.   
T Consensus        64 ~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~  143 (274)
T 2qe6_A           64 VLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYI  143 (274)
T ss_dssp             HHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHH
T ss_pred             HHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhh
Confidence            345666666522355899999 999   98887776653  589999999999999973222346899999998641   


Q ss_pred             --------CCCCCCccEEEEcCCCCCchH--------HHHhccccCcEEEEEecC
Q psy8015          84 --------FGDNGPYDAIHVGAAYPRYPE--------IFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        84 --------~~~~~~fD~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~~~  122 (165)
                              ..+..+||+|++....+++++        ++.+.|+|||+|++....
T Consensus       144 ~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~  198 (274)
T 2qe6_A          144 LNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLV  198 (274)
T ss_dssp             HHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred             hccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence                    112247999999988887653        578999999999997754

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.42  E-value=2.1e-13  Score=111.43  Aligned_cols=114  Identities=13%  Similarity=0.087  Sum_probs=88.7

Q ss_pred             EecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEcc
Q psy8015           5 FVSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIAD   79 (165)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD   79 (165)
                      |+.+..+.....+++.+.. .++.+|||+ ||+|.++..+++..  .+|+++|+|+.+++.|+  .+..+. +++++.+|
T Consensus       176 f~~~~~d~~~~~ll~~l~~-~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~~~~~~d  253 (343)
T 2pjd_A          176 FSRDGLDVGSQLLLSTLTP-HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV-EGEVFASN  253 (343)
T ss_dssp             TTSSSCCHHHHHHHHHSCT-TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC-CCEEEECS
T ss_pred             cCCCCCcHHHHHHHHhcCc-CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCEEEEcc
Confidence            4444455567778887743 567899999 99999999999876  48999999999999996  444454 37889999


Q ss_pred             CCCCCCCCCCccEEEEcCCCCC-----------chHHHHhccccCcEEEEEecC
Q psy8015          80 GRASFGDNGPYDAIHVGAAYPR-----------YPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        80 ~~~~~~~~~~fD~I~i~~~~~~-----------~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      .....  .++||+|+++...+.           +..++.+.|||||++++....
T Consensus       254 ~~~~~--~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  305 (343)
T 2pjd_A          254 VFSEV--KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (343)
T ss_dssp             TTTTC--CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred             ccccc--cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence            86533  468999999887764           123578999999999998764

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.42  E-value=6.5e-13  Score=103.92  Aligned_cols=101  Identities=12%  Similarity=0.033  Sum_probs=76.9

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEE
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAI   93 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I   93 (165)
                      .+++..+.  .++.+|||+ ||+|.++..+++...+|+++|+|++|++.|+.+..  .+  ++.+|+.+...+.++||+|
T Consensus        45 ~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~--~~--~~~~d~~~~~~~~~~fD~v  118 (260)
T 2avn_A           45 GSFLEEYL--KNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV--KN--VVEAKAEDLPFPSGAFEAV  118 (260)
T ss_dssp             HHHHHHHC--CSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC--SC--EEECCTTSCCSCTTCEEEE
T ss_pred             HHHHHHhc--CCCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcC--CC--EEECcHHHCCCCCCCEEEE
Confidence            34444442  378999999 99999999999988899999999999999973321  23  8889987643345789999


Q ss_pred             EEcCCCCCc---h----HHHHhccccCcEEEEEec
Q psy8015          94 HVGAAYPRY---P----EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        94 ~i~~~~~~~---p----~~l~~~LkpgG~lvi~~~  121 (165)
                      ++.....++   +    .++.+.|||||++++...
T Consensus       119 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  153 (260)
T 2avn_A          119 LALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD  153 (260)
T ss_dssp             EECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeC
Confidence            997644322   2    467899999999998764

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.42  E-value=5.8e-13  Score=99.84  Aligned_cols=101  Identities=13%  Similarity=0.038  Sum_probs=74.6

Q ss_pred             HHHHHHHHHhc---CCCCCeEEEE-ccccHHHHHHhccC----CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC
Q psy8015          13 AVAKYVTYLSG---HSKRLDCLAL-TSNTKQSTTLPTFI----PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF   84 (165)
Q Consensus        13 ~~~~~l~~l~~---~~~~~~vLei-~GsG~~t~~la~~~----~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~   84 (165)
                      ..-++++++..   ..++.+|||+ ||+|.++..+++..    .+|+++|+++.    +     ..++++++++|..+..
T Consensus         6 ~~~kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~-----~~~~v~~~~~d~~~~~   76 (201)
T 2plw_A            6 AAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM----D-----PIPNVYFIQGEIGKDN   76 (201)
T ss_dssp             THHHHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC----C-----CCTTCEEEECCTTTTS
T ss_pred             HHHHHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc----C-----CCCCceEEEccccchh
Confidence            33455554432   3688999999 99999999999874    58999999993    1     2357999999986542


Q ss_pred             -------------------------CCCCCccEEEEcCCCCCc-----------------hHHHHhccccCcEEEEEecC
Q psy8015          85 -------------------------GDNGPYDAIHVGAAYPRY-----------------PEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        85 -------------------------~~~~~fD~I~i~~~~~~~-----------------p~~l~~~LkpgG~lvi~~~~  122 (165)
                                               .+.++||+|+++...+..                 ...+.+.|||||++++.+..
T Consensus        77 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  156 (201)
T 2plw_A           77 MNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL  156 (201)
T ss_dssp             SCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence                                     134689999998776541                 22467899999999986543

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.42  E-value=5.6e-13  Score=102.09  Aligned_cols=92  Identities=11%  Similarity=0.034  Sum_probs=74.9

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcC-CCCCc
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGA-AYPRY  102 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~-~~~~~  102 (165)
                      .++.+|||+ ||+|.++..+++...+|+++|++++|++.|+.+   .++++++.+|..+.. ..++||+|++.. ..+++
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~---~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~  114 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKR---LPDATLHQGDMRDFR-LGRKFSAVVSMFSSVGYL  114 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHH---CTTCEEEECCTTTCC-CSSCEEEEEECTTGGGGC
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHh---CCCCEEEECCHHHcc-cCCCCcEEEEcCchHhhc
Confidence            578999999 999999999998878999999999999999743   257999999987633 357899999543 55544


Q ss_pred             h---------HHHHhccccCcEEEEEe
Q psy8015         103 P---------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus       103 p---------~~l~~~LkpgG~lvi~~  120 (165)
                      +         ..+.+.|||||++++..
T Consensus       115 ~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A          115 KTTEELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             CSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            2         35789999999999864

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.41  E-value=9.5e-13  Score=107.67  Aligned_cols=93  Identities=10%  Similarity=-0.149  Sum_probs=73.2

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCCCCccEEEEcCC
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDNGPYDAIHVGAA   98 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~~~fD~I~i~~~   98 (165)
                      ..++.+|||| ||+|.++..+++.. .+|+++|+++ |++.|+  .+..+. ++++++.+|+.+...+.++||+|++...
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~  140 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM  140 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence            3678999999 99999999999875 4899999997 999886  555666 6899999998764333478999998752


Q ss_pred             ---CCC--ch----HHHHhccccCcEEE
Q psy8015          99 ---YPR--YP----EIFIHHLKSGGRLV  117 (165)
Q Consensus        99 ---~~~--~p----~~l~~~LkpgG~lv  117 (165)
                         ..+  .+    ..+.+.|||||+++
T Consensus       141 ~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          141 GYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             BTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             hhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence               221  12    34568999999987

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.41  E-value=3.1e-13  Score=112.39  Aligned_cols=110  Identities=13%  Similarity=0.014  Sum_probs=83.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCC--CeEEEEccCCCCCC-
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPD--HDYDLIADGRASFG-   85 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~--nV~~~~gD~~~~~~-   85 (165)
                      ....++..+.  .++++|||+ ||+|.++..+|+.. .+|+++|+|+++++.|+  ++..+++  |++++.+|+.+.++ 
T Consensus       201 ~~~~~~~~~~--~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~  278 (385)
T 2b78_A          201 QVRNELINGS--AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKY  278 (385)
T ss_dssp             HHHHHHHHTT--TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHh--cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHH
Confidence            3344444432  578999999 99999999999854 68999999999999996  5556776  89999999865332 


Q ss_pred             ---CCCCccEEEEcCCCC-----Cch----------HHHHhccccCcEEEEEecCCC
Q psy8015          86 ---DNGPYDAIHVGAAYP-----RYP----------EIFIHHLKSGGRLVIPIGDTK  124 (165)
Q Consensus        86 ---~~~~fD~I~i~~~~~-----~~p----------~~l~~~LkpgG~lvi~~~~~~  124 (165)
                         ...+||+|+++....     ...          ..+.+.|+|||++++.+....
T Consensus       279 ~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~  335 (385)
T 2b78_A          279 ARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN  335 (385)
T ss_dssp             HHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             HHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence               135899999986541     221          234689999999999887654

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.41  E-value=6.4e-14  Score=119.04  Aligned_cols=104  Identities=15%  Similarity=0.040  Sum_probs=81.1

Q ss_pred             HHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC-CCCCc
Q psy8015          18 VTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG-DNGPY   90 (165)
Q Consensus        18 l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~-~~~~f   90 (165)
                      +..+....++++|||+ ||+|..|..+|...   ++|+++|+++++++.++  ++++|+.|++++++|+..... ..++|
T Consensus        97 ~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~F  176 (456)
T 3m4x_A           97 VGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFF  176 (456)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCE
T ss_pred             HHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccC
Confidence            3333345789999999 99999999999863   58999999999999995  677888999999999865321 23689


Q ss_pred             cEEEEcCCCC------Cc----------------------hHHHHhccccCcEEEEEec
Q psy8015          91 DAIHVGAAYP------RY----------------------PEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        91 D~I~i~~~~~------~~----------------------p~~l~~~LkpgG~lvi~~~  121 (165)
                      |+|++++.+.      .-                      .+.+.+.|||||+|+....
T Consensus       177 D~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC  235 (456)
T 3m4x_A          177 DRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC  235 (456)
T ss_dssp             EEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred             CEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            9999987642      11                      1235689999999998654

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.40  E-value=9.3e-13  Score=104.35  Aligned_cols=95  Identities=8%  Similarity=-0.067  Sum_probs=76.7

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--ccc----CCCCCeEEEEccCCCCCCCCCCccEEEEcC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SST----IDPDHDYDLIADGRASFGDNGPYDAIHVGA   97 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~----~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~   97 (165)
                      ..+++|||| ||+|+++..+++...+|+++|+|+++++.|+  +..    ...++++++.+|+.+.+   ++||+|+++.
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~  147 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ  147 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC
Confidence            456899999 9999999888765568999999999999997  322    12357999999997644   6899999986


Q ss_pred             CCCC-chHHHHhccccCcEEEEEecC
Q psy8015          98 AYPR-YPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        98 ~~~~-~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      ..+. ..+.+.+.|+|||++++..+.
T Consensus       148 ~dp~~~~~~~~~~L~pgG~lv~~~~~  173 (262)
T 2cmg_A          148 EPDIHRIDGLKRMLKEDGVFISVAKH  173 (262)
T ss_dssp             CCCHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             CChHHHHHHHHHhcCCCcEEEEEcCC
Confidence            5543 356789999999999997654

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.40  E-value=4.7e-13  Score=107.89  Aligned_cols=88  Identities=11%  Similarity=-0.032  Sum_probs=72.0

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGP   89 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~   89 (165)
                      +..++++++.+. ..++++|||| ||+|++|..|++.+.+|+++|+|++|++.++.+..+.+|++++++|+.+...+..+
T Consensus        36 ~~i~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~  114 (295)
T 3gru_A           36 KNFVNKAVESAN-LTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLD  114 (295)
T ss_dssp             HHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSC
T ss_pred             HHHHHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCC
Confidence            466788888885 4789999999 99999999999999999999999999999962211457899999999874333457


Q ss_pred             ccEEEEcCCC
Q psy8015          90 YDAIHVGAAY   99 (165)
Q Consensus        90 fD~I~i~~~~   99 (165)
                      ||+|+.+..+
T Consensus       115 fD~Iv~NlPy  124 (295)
T 3gru_A          115 FNKVVANLPY  124 (295)
T ss_dssp             CSEEEEECCG
T ss_pred             ccEEEEeCcc
Confidence            9999976544

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.40  E-value=5.5e-14  Score=119.67  Aligned_cols=98  Identities=16%  Similarity=0.004  Sum_probs=78.1

Q ss_pred             cCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC-CCCCccEEEE
Q psy8015          23 GHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG-DNGPYDAIHV   95 (165)
Q Consensus        23 ~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~-~~~~fD~I~i   95 (165)
                      ...++++|||+ ||+|..|..+|...   ++|+++|+++++++.++  ++++|+. ++++++|+..... ..++||+|++
T Consensus        98 ~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~  176 (464)
T 3m6w_A           98 DPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLL  176 (464)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEE
T ss_pred             CcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEE
Confidence            45789999999 99999999999874   58999999999999996  6777887 9999999865321 2468999999


Q ss_pred             cCCCC---------C-------------------chHHHHhccccCcEEEEEec
Q psy8015          96 GAAYP---------R-------------------YPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        96 ~~~~~---------~-------------------~p~~l~~~LkpgG~lvi~~~  121 (165)
                      ++.+.         +                   +.+.+.+.|||||+|+....
T Consensus       177 D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC  230 (464)
T 3m6w_A          177 DAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC  230 (464)
T ss_dssp             ECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred             CCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            76542         1                   11245789999999998643

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.39  E-value=1.6e-13  Score=113.82  Aligned_cols=103  Identities=12%  Similarity=0.007  Sum_probs=82.3

Q ss_pred             HHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC----CCCccE
Q psy8015          20 YLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD----NGPYDA   92 (165)
Q Consensus        20 ~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~----~~~fD~   92 (165)
                      ++... ++++|||+ ||+|.++..+++...+|+++|+++++++.|+  ++..+++|++++.+|+.+.++.    ..+||+
T Consensus       204 ~~~~~-~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~  282 (382)
T 1wxx_A          204 YMERF-RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDL  282 (382)
T ss_dssp             HGGGC-CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             HHHhc-CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeE
Confidence            34444 78999999 9999999999988779999999999999996  5666788899999998654321    468999


Q ss_pred             EEEcCCCCC---------------chHHHHhccccCcEEEEEecCC
Q psy8015          93 IHVGAAYPR---------------YPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        93 I~i~~~~~~---------------~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      |+++.....               +...+.+.|+|||++++.....
T Consensus       283 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  328 (382)
T 1wxx_A          283 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  328 (382)
T ss_dssp             EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            999865411               2235679999999999987654

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.39  E-value=1e-12  Score=106.32  Aligned_cols=111  Identities=11%  Similarity=-0.083  Sum_probs=80.6

Q ss_pred             CchHHHHHHHHHHhc--CCCCCeEEEE-ccccHHHHHHhccCCcEEEEeC----CHHHHHhcccccCCCCCeEEEEc-cC
Q psy8015           9 SVSGAVAKYVTYLSG--HSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINV----YYYLSGGPLSSTIDPDHDYDLIA-DG   80 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~--~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~----~~~~~~~A~~~~~~~~nV~~~~g-D~   80 (165)
                      -+++...++.+++..  ..++++|||+ ||+|.+|..+++. ++|+++|+    ++.+++.++.+..+.++|+++.+ |.
T Consensus        63 ~~sR~a~KL~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~  141 (305)
T 2p41_A           63 AVSRGSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDV  141 (305)
T ss_dssp             CSSTHHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCT
T ss_pred             ccccHHHHHHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEecccc
Confidence            355666666665532  3678999999 9999999999998 89999999    56554443334444568999999 88


Q ss_pred             CCCCCCCCCccEEEEcCCCC---Cc---------hHHHHhccccCcEEEEEecC
Q psy8015          81 RASFGDNGPYDAIHVGAAYP---RY---------PEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        81 ~~~~~~~~~fD~I~i~~~~~---~~---------p~~l~~~LkpgG~lvi~~~~  122 (165)
                      ... + .++||+|+++.+..   ..         ...+.+.|||||++++-+-.
T Consensus       142 ~~l-~-~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~  193 (305)
T 2p41_A          142 FFI-P-PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN  193 (305)
T ss_dssp             TTS-C-CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred             ccC-C-cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            653 3 36899999987753   11         12356899999999986543

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.39  E-value=9.2e-14  Score=108.25  Aligned_cols=102  Identities=11%  Similarity=0.056  Sum_probs=68.2

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccc--c---CCCCCeEEEE-ccCCCCCC
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSS--T---IDPDHDYDLI-ADGRASFG   85 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~--~---~~~~nV~~~~-gD~~~~~~   85 (165)
                      ..++++.+....++.+|||| ||||+++..|++.. .+|+++|++++|++.|+.+  +   .+..|+.+.. +|....  
T Consensus        25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--  102 (232)
T 3opn_A           25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQG--  102 (232)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSC--
T ss_pred             HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcC--
Confidence            34555555432357799999 99999999999876 5999999999999987521  1   1222444333 222211  


Q ss_pred             CCCCccEEEEcCCC---CCchHHHHhccccCcEEEEEe
Q psy8015          86 DNGPYDAIHVGAAY---PRYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        86 ~~~~fD~I~i~~~~---~~~p~~l~~~LkpgG~lvi~~  120 (165)
                         .||.+.++...   ..+..++.+.|||||++++.+
T Consensus       103 ---~~d~~~~D~v~~~l~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A          103 ---RPSFTSIDVSFISLDLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             ---CCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEEE
T ss_pred             ---CCCEEEEEEEhhhHHHHHHHHHHhccCCCEEEEEE
Confidence               24444444433   345578899999999999975

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.39  E-value=5.6e-13  Score=103.55  Aligned_cols=97  Identities=14%  Similarity=-0.082  Sum_probs=75.9

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCC-cEEEEeCCHHHHHhcc--cccCCC-----------------------------C
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPL--SSTIDP-----------------------------D   71 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~--~~~~~~-----------------------------~   71 (165)
                      .++.+|||+ ||+|.++..+++... +|+++|+++.|++.|+  ++..+.                             .
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            467899999 999999999988775 9999999999999996  322110                             0


Q ss_pred             Ce-EEEEccCCCCCC-CC---CCccEEEEcCCCC----Cch------HHHHhccccCcEEEEEec
Q psy8015          72 HD-YDLIADGRASFG-DN---GPYDAIHVGAAYP----RYP------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        72 nV-~~~~gD~~~~~~-~~---~~fD~I~i~~~~~----~~p------~~l~~~LkpgG~lvi~~~  121 (165)
                      ++ +++.+|..+..+ ..   ++||+|++....+    +.+      .++.+.|||||++++...
T Consensus       135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  199 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA  199 (265)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence            27 999999876433 33   6899999988776    432      357899999999999764

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.38  E-value=1.2e-12  Score=98.95  Aligned_cols=104  Identities=15%  Similarity=0.029  Sum_probs=78.7

Q ss_pred             chHHHHHHHHHHhc---CCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC
Q psy8015          10 VSGAVAKYVTYLSG---HSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG   85 (165)
Q Consensus        10 ~~~~~~~~l~~l~~---~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~   85 (165)
                      .+++.-++++++..   ..++.+|||+ ||+|.+|..+++..++|+++|+++..         ..+|++++++|..+...
T Consensus         6 r~Ra~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~---------~~~~v~~~~~D~~~~~~   76 (191)
T 3dou_A            6 RSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME---------EIAGVRFIRCDIFKETI   76 (191)
T ss_dssp             TSHHHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC---------CCTTCEEEECCTTSSSH
T ss_pred             CCcHHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc---------cCCCeEEEEccccCHHH
Confidence            45677777777753   2689999999 99999999999998899999999741         24689999999865321


Q ss_pred             --------C---CCCccEEEEcCCCCCc-----------------hHHHHhccccCcEEEEEecC
Q psy8015          86 --------D---NGPYDAIHVGAAYPRY-----------------PEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        86 --------~---~~~fD~I~i~~~~~~~-----------------p~~l~~~LkpgG~lvi~~~~  122 (165)
                              .   .++||+|+++++....                 .+.+.+.|||||++++-+-.
T Consensus        77 ~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~  141 (191)
T 3dou_A           77 FDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQ  141 (191)
T ss_dssp             HHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcC
Confidence                    0   0389999998754311                 12357899999999987643

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.38  E-value=1.5e-12  Score=99.32  Aligned_cols=89  Identities=11%  Similarity=0.021  Sum_probs=73.5

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCCch
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYP  103 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p  103 (165)
                      .++.+|||+ ||+|.++..++..    +++|+++++++.|+.+     +++++.+|+.....+.++||+|++....++++
T Consensus        46 ~~~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  116 (219)
T 1vlm_A           46 LPEGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR-----GVFVLKGTAENLPLKDESFDFALMVTTICFVD  116 (219)
T ss_dssp             CCSSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT-----TCEEEECBTTBCCSCTTCEEEEEEESCGGGSS
T ss_pred             CCCCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc-----CCEEEEcccccCCCCCCCeeEEEEcchHhhcc
Confidence            458999999 9999999988875    9999999999998743     68999999866433456899999998876554


Q ss_pred             ------HHHHhccccCcEEEEEecC
Q psy8015         104 ------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus       104 ------~~l~~~LkpgG~lvi~~~~  122 (165)
                            +.+.+.|+|||++++....
T Consensus       117 ~~~~~l~~~~~~L~pgG~l~i~~~~  141 (219)
T 1vlm_A          117 DPERALKEAYRILKKGGYLIVGIVD  141 (219)
T ss_dssp             CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CHHHHHHHHHHHcCCCcEEEEEEeC
Confidence                  3578999999999997653

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.38  E-value=2.6e-13  Score=112.96  Aligned_cols=108  Identities=8%  Similarity=-0.101  Sum_probs=83.4

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCCC-C-CeEEEEccCCCCCCC-
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTIDP-D-HDYDLIADGRASFGD-   86 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~-~-nV~~~~gD~~~~~~~-   86 (165)
                      ...++..+   .++++|||+ ||+|.++..+++. ..+|+++|+++++++.|+  ++..++ + |++++.+|+.+.++. 
T Consensus       211 ~~~~l~~~---~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~  287 (396)
T 3c0k_A          211 SRLATRRY---VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTY  287 (396)
T ss_dssp             HHHHHHHH---CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHH
T ss_pred             HHHHHHHh---hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHH
Confidence            33444444   578999999 9999999999987 479999999999999996  555677 6 899999998654321 


Q ss_pred             ---CCCccEEEEcCCCC---------------CchHHHHhccccCcEEEEEecCCC
Q psy8015          87 ---NGPYDAIHVGAAYP---------------RYPEIFIHHLKSGGRLVIPIGDTK  124 (165)
Q Consensus        87 ---~~~fD~I~i~~~~~---------------~~p~~l~~~LkpgG~lvi~~~~~~  124 (165)
                         ..+||+|+++....               .+...+.+.|+|||++++.+....
T Consensus       288 ~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  343 (396)
T 3c0k_A          288 RDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGL  343 (396)
T ss_dssp             HHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             HhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence               35899999986431               112346799999999999886543

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.38  E-value=1.1e-12  Score=107.20  Aligned_cols=93  Identities=8%  Similarity=-0.080  Sum_probs=77.5

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDNGPYDAIHVGAAYP  100 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~  100 (165)
                      .++++|||+ ||+|.++.. ++...+|+++|+|+++++.|+  ++..++ +|++++++|+.+.+   ++||+|+++....
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~~  269 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPKF  269 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTTT
T ss_pred             CCCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcHh
Confidence            578999999 999999999 886679999999999999996  555666 57999999997654   6899999974322


Q ss_pred             --CchHHHHhccccCcEEEEEec
Q psy8015         101 --RYPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       101 --~~p~~l~~~LkpgG~lvi~~~  121 (165)
                        .+.+.+.+.|+|||++++...
T Consensus       270 ~~~~l~~~~~~L~~gG~l~~~~~  292 (336)
T 2yx1_A          270 AHKFIDKALDIVEEGGVIHYYTI  292 (336)
T ss_dssp             GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCCEEEEEEe
Confidence              455678899999999988643

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.38  E-value=1e-12  Score=107.82  Aligned_cols=92  Identities=11%  Similarity=-0.115  Sum_probs=72.9

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      .++++|||+ ||+|.++..+++.. .+|+++|+++ |++.|+  .+..+..+ ++++.+|+.+...+.++||+|++....
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~  143 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  143 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence            578999999 99999999999884 5999999994 999996  55567665 999999997753335789999986532


Q ss_pred             C-----Cch----HHHHhccccCcEEE
Q psy8015         100 P-----RYP----EIFIHHLKSGGRLV  117 (165)
Q Consensus       100 ~-----~~p----~~l~~~LkpgG~lv  117 (165)
                      .     ..+    ..+.+.|||||+++
T Consensus       144 ~~l~~~~~~~~~l~~~~r~LkpgG~li  170 (349)
T 3q7e_A          144 YCLFYESMLNTVLHARDKWLAPDGLIF  170 (349)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccCchhHHHHHHHHHHhCCCCCEEc
Confidence            1     222    34578999999987

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.37  E-value=8.6e-13  Score=105.03  Aligned_cols=98  Identities=13%  Similarity=0.134  Sum_probs=77.7

Q ss_pred             CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cc----cCCCCCeEEEEccCCCCCC-CCCCccEEE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SS----TIDPDHDYDLIADGRASFG-DNGPYDAIH   94 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~----~~~~~nV~~~~gD~~~~~~-~~~~fD~I~   94 (165)
                      ..+++|||| ||+|.++..+++.  ..+|+++|+|+++++.||  +.    .++.++++++.+|+.+.++ ..++||+|+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            467899999 9999999999987  369999999999999997  32    2334579999999865332 246899999


Q ss_pred             EcCCCCC----------chHHHHhccccCcEEEEEecC
Q psy8015          95 VGAAYPR----------YPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        95 i~~~~~~----------~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      ++...+.          +-+.+.+.|+|||++++..+.
T Consensus       154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~  191 (275)
T 1iy9_A          154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (275)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            9876542          234678999999999998653

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.37  E-value=2.1e-12  Score=106.97  Aligned_cols=92  Identities=10%  Similarity=-0.116  Sum_probs=73.4

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCC-cEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      .++.+|||+ ||+|.++..+++... +|+++|.+ +|++.|+  .+..++.+ ++++++|+.+...+ ++||+|++....
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~  139 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMG  139 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCB
T ss_pred             CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChh
Confidence            678999999 999999999998764 99999999 9999996  55567654 99999999764333 789999996532


Q ss_pred             CC-----ch----HHHHhccccCcEEEE
Q psy8015         100 PR-----YP----EIFIHHLKSGGRLVI  118 (165)
Q Consensus       100 ~~-----~p----~~l~~~LkpgG~lvi  118 (165)
                      ..     .+    ..+.+.|||||+++.
T Consensus       140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~  167 (376)
T 3r0q_C          140 YFLLRESMFDSVISARDRWLKPTGVMYP  167 (376)
T ss_dssp             TTBTTTCTHHHHHHHHHHHEEEEEEEES
T ss_pred             hcccchHHHHHHHHHHHhhCCCCeEEEE
Confidence            22     22    345689999999875

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.36  E-value=1.6e-12  Score=94.22  Aligned_cols=99  Identities=13%  Similarity=0.004  Sum_probs=75.5

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC------
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF------   84 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~------   84 (165)
                      ..+++.+....++.+|||+ ||+|.++..+++..   .+|+++|+++ +++.        .+++++.+|..+..      
T Consensus        11 ~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--------~~~~~~~~d~~~~~~~~~~~   81 (180)
T 1ej0_A           11 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--------VGVDFLQGDFRDELVMKALL   81 (180)
T ss_dssp             HHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC--------TTEEEEESCTTSHHHHHHHH
T ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc--------CcEEEEEcccccchhhhhhh
Confidence            3455555434688999999 99999999999873   6899999999 6542        57999999987642      


Q ss_pred             --CCCCCccEEEEcCCCCCc-----------------hHHHHhccccCcEEEEEecC
Q psy8015          85 --GDNGPYDAIHVGAAYPRY-----------------PEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        85 --~~~~~fD~I~i~~~~~~~-----------------p~~l~~~LkpgG~lvi~~~~  122 (165)
                        .+.++||+|+++...+..                 .+.+.+.|+|||++++....
T Consensus        82 ~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  138 (180)
T 1ej0_A           82 ERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ  138 (180)
T ss_dssp             HHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             ccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence              234689999998766432                 23567899999999997654

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.36  E-value=1.3e-12  Score=101.78  Aligned_cols=74  Identities=7%  Similarity=-0.113  Sum_probs=59.3

Q ss_pred             CCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCC----CCCC--CCCccEE
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRA----SFGD--NGPYDAI   93 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~----~~~~--~~~fD~I   93 (165)
                      ++.+|||+ ||+|.++..+++.  ..+|+++|++++|++.|+  .+..++++ ++++++|+.+    .++.  .++||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            46799999 9999999888876  469999999999999996  55567765 9999999754    2222  2589999


Q ss_pred             EEcCCC
Q psy8015          94 HVGAAY   99 (165)
Q Consensus        94 ~i~~~~   99 (165)
                      +++...
T Consensus       145 ~~npp~  150 (254)
T 2h00_A          145 MCNPPF  150 (254)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            998443

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.36  E-value=1.1e-12  Score=104.53  Aligned_cols=97  Identities=15%  Similarity=0.161  Sum_probs=76.1

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccC-----------CCCCeEEEEccCCCCCCCCC
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTI-----------DPDHDYDLIADGRASFGDNG   88 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~-----------~~~nV~~~~gD~~~~~~~~~   88 (165)
                      +.++.+|||| ||+|.++..+++. ..+|+++|+|+++++.|+  + .+           ..++++++.+|+.+.++..+
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~  151 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR  151 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccC
Confidence            3567899999 9999999999987 358999999999999997  4 33           23579999999864222146


Q ss_pred             CccEEEEcCCCCC----------chHHHHhccccCcEEEEEec
Q psy8015          89 PYDAIHVGAAYPR----------YPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        89 ~fD~I~i~~~~~~----------~p~~l~~~LkpgG~lvi~~~  121 (165)
                      +||+|+++...+.          +-+.+.+.|+|||++++..+
T Consensus       152 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  194 (281)
T 1mjf_A          152 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG  194 (281)
T ss_dssp             CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            8999999876431          12467899999999999754

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.35  E-value=2.9e-12  Score=102.78  Aligned_cols=109  Identities=8%  Similarity=0.001  Sum_probs=81.3

Q ss_pred             HHHHHHHHhcC-CCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccC-------CCCCeEEEEccCC
Q psy8015          14 VAKYVTYLSGH-SKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTI-------DPDHDYDLIADGR   81 (165)
Q Consensus        14 ~~~~l~~l~~~-~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~-------~~~nV~~~~gD~~   81 (165)
                      ..++++.+... .++.+|||+ ||+|..+..+++. ..+|+++|++++|++.|+  .+..       +..+++++.+|+.
T Consensus        21 ~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~  100 (313)
T 3bgv_A           21 IGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSS  100 (313)
T ss_dssp             HHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTT
T ss_pred             HHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEeccc
Confidence            34555555432 378899999 9999999988864 468999999999999996  2221       3457999999987


Q ss_pred             CCC-----C-CCCCccEEEEcCCCCCc----h------HHHHhccccCcEEEEEecC
Q psy8015          82 ASF-----G-DNGPYDAIHVGAAYPRY----P------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        82 ~~~-----~-~~~~fD~I~i~~~~~~~----p------~~l~~~LkpgG~lvi~~~~  122 (165)
                      ...     + +.++||+|++..+.+.+    +      .++.+.|||||++++....
T Consensus       101 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  157 (313)
T 3bgv_A          101 KELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN  157 (313)
T ss_dssp             TSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             ccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            642     2 23589999999887654    2      2568999999999998764

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.35  E-value=4.7e-13  Score=105.26  Aligned_cols=97  Identities=11%  Similarity=-0.138  Sum_probs=72.4

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccC--CC---------------------------C
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTI--DP---------------------------D   71 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~--~~---------------------------~   71 (165)
                      .++.+|||| ||+|.++..++... .+|+++|+|+.|++.|+  ++..  +.                           .
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  133 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence            578899999 99998887776654 58999999999999986  2211  11                           1


Q ss_pred             CeE-EEEccCCCCCC----CCCCccEEEEcCCCCCc----h------HHHHhccccCcEEEEEec
Q psy8015          72 HDY-DLIADGRASFG----DNGPYDAIHVGAAYPRY----P------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        72 nV~-~~~gD~~~~~~----~~~~fD~I~i~~~~~~~----p------~~l~~~LkpgG~lvi~~~  121 (165)
                      +++ ++.+|..+..+    ..++||+|++....+++    +      .++.+.|||||++++...
T Consensus       134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~  198 (263)
T 2a14_A          134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT  198 (263)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            344 89999876322    24689999998776543    2      256799999999999753

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.35  E-value=7.7e-13  Score=110.48  Aligned_cols=106  Identities=7%  Similarity=-0.039  Sum_probs=77.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC-CC
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD-NG   88 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~-~~   88 (165)
                      ...+++..+  .+++++|||+ ||||.+|..+|+...+|+++|+|+.+++.|+  ++..+++ .++.++|+.+.++. .+
T Consensus       203 ~~r~~l~~~--~~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~-~~~~~~D~~~~l~~~~~  279 (393)
T 4dmg_A          203 ENRRLFEAM--VRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLR-VDIRHGEALPTLRGLEG  279 (393)
T ss_dssp             HHHHHHHTT--CCTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC-CEEEESCHHHHHHTCCC
T ss_pred             HHHHHHHHH--hcCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCC-CcEEEccHHHHHHHhcC
Confidence            344444443  2469999999 9999999999998777999999999999996  4455665 36779998653321 23


Q ss_pred             CccEEEEcCCCC---------------CchHHHHhccccCcEEEEEec
Q psy8015          89 PYDAIHVGAAYP---------------RYPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        89 ~fD~I~i~~~~~---------------~~p~~l~~~LkpgG~lvi~~~  121 (165)
                      .||+|+++...-               .+.+.+.+.|+|||+|++...
T Consensus       280 ~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~  327 (393)
T 4dmg_A          280 PFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC  327 (393)
T ss_dssp             CEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            499999986541               122346789999999996544

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.35  E-value=2.6e-12  Score=97.41  Aligned_cols=93  Identities=12%  Similarity=0.132  Sum_probs=75.3

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC-CC-CCCCccEEEEcCCCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS-FG-DNGPYDAIHVGAAYPR  101 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~-~~-~~~~fD~I~i~~~~~~  101 (165)
                      .++.+|||+ ||+|.++..+++...+|+++|+++++++.|+.+.     .+++.+|+.+. .+ +.++||+|++....++
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~-----~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~  105 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL-----DHVVLGDIETMDMPYEEEQFDCVIFGDVLEH  105 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS-----SEEEESCTTTCCCCSCTTCEEEEEEESCGGG
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC-----CcEEEcchhhcCCCCCCCccCEEEECChhhh
Confidence            578999999 9999999999988779999999999999886321     37888998642 22 3478999999988776


Q ss_pred             ch------HHHHhccccCcEEEEEecC
Q psy8015         102 YP------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus       102 ~p------~~l~~~LkpgG~lvi~~~~  122 (165)
                      ++      +.+.+.|+|||++++....
T Consensus       106 ~~~~~~~l~~~~~~L~~gG~l~~~~~~  132 (230)
T 3cc8_A          106 LFDPWAVIEKVKPYIKQNGVILASIPN  132 (230)
T ss_dssp             SSCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred             cCCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            54      3567899999999997654

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.35  E-value=2.4e-12  Score=104.01  Aligned_cols=97  Identities=11%  Similarity=0.070  Sum_probs=75.7

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--ccc----CCCCCeEEEEccCCCCCC-CCCCccEEE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SST----IDPDHDYDLIADGRASFG-DNGPYDAIH   94 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~----~~~~nV~~~~gD~~~~~~-~~~~fD~I~   94 (165)
                      .++++|||| ||+|+++..+++..  .+|+++|+|+++++.|+  +..    +..++++++.+|+.+.++ ..++||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            567899999 99999999999874  68999999999999996  332    224689999999865222 246899999


Q ss_pred             EcCCCCC----------chHHHHhccccCcEEEEEec
Q psy8015          95 VGAAYPR----------YPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        95 i~~~~~~----------~p~~l~~~LkpgG~lvi~~~  121 (165)
                      ++...+.          +-+.+.+.|+|||++++...
T Consensus       174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  210 (304)
T 2o07_A          174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE  210 (304)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence            9876532          23467899999999999763

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.35  E-value=1.4e-12  Score=109.61  Aligned_cols=103  Identities=18%  Similarity=0.206  Sum_probs=80.1

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC--CCCC
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF--GDNG   88 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~--~~~~   88 (165)
                      .+..++ ...++++|||+ ||+|..|..++...  ++|+++|+++.+++.++  +++.|. +++++.+|+....  .+.+
T Consensus       237 ~~~~~l-~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~~~~~~  314 (429)
T 1sqg_A          237 GCMTWL-APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQWCGEQ  314 (429)
T ss_dssp             THHHHH-CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHHHTTC
T ss_pred             HHHHHc-CCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchhhcccC
Confidence            344444 45889999999 99999999999887  59999999999999985  566676 5899999987532  1236


Q ss_pred             CccEEEEcCCCC------C----------------------chHHHHhccccCcEEEEEe
Q psy8015          89 PYDAIHVGAAYP------R----------------------YPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        89 ~fD~I~i~~~~~------~----------------------~p~~l~~~LkpgG~lvi~~  120 (165)
                      +||+|+++..+.      +                      +.+.+.+.|||||++++..
T Consensus       315 ~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst  374 (429)
T 1sqg_A          315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  374 (429)
T ss_dssp             CEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            899999976442      1                      1234678999999999875

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.35  E-value=5.6e-13  Score=109.10  Aligned_cols=97  Identities=14%  Similarity=0.156  Sum_probs=75.7

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccC--C--CCCeEEEEccCCCCCC--CCCCccEE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTI--D--PDHDYDLIADGRASFG--DNGPYDAI   93 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~--~--~~nV~~~~gD~~~~~~--~~~~fD~I   93 (165)
                      .+..+|||| ||+|+++..+++..  .+|+++|+|+++++.|+  ++.+  +  .++++++.+|+.+.++  ..++||+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            467899999 99999999999873  68999999999999996  3321  2  3579999999865322  24689999


Q ss_pred             EEcCCCCC----------chHHHHhccccCcEEEEEec
Q psy8015          94 HVGAAYPR----------YPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        94 ~i~~~~~~----------~p~~l~~~LkpgG~lvi~~~  121 (165)
                      +++...+.          +-+.+.+.|+|||++++..+
T Consensus       199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  236 (334)
T 1xj5_A          199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE  236 (334)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence            99865332          12367899999999999643

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.35  E-value=3.5e-12  Score=104.46  Aligned_cols=101  Identities=10%  Similarity=-0.076  Sum_probs=76.5

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCCCCc
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDNGPY   90 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~~~f   90 (165)
                      .+++.+. ..++++|||| ||+|.++..+++.. .+|+++|.++ +++.|+  .+..++ ++++++.+|..+. +..++|
T Consensus        41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~~~~~~  117 (348)
T 2y1w_A           41 AILQNHT-DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV-SLPEQV  117 (348)
T ss_dssp             HHHHTGG-GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSCE
T ss_pred             HHHhccc-cCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhC-CCCCce
Confidence            3444443 2688999999 99999999999875 5999999996 888886  555566 5799999998763 223689


Q ss_pred             cEEEEcCCCCC-----chH---HHHhccccCcEEEEE
Q psy8015          91 DAIHVGAAYPR-----YPE---IFIHHLKSGGRLVIP  119 (165)
Q Consensus        91 D~I~i~~~~~~-----~p~---~l~~~LkpgG~lvi~  119 (165)
                      |+|++.....+     +++   .+.+.|||||++++.
T Consensus       118 D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          118 DIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             EEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             eEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            99999865432     222   347899999999853

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.35  E-value=1.5e-12  Score=105.88  Aligned_cols=95  Identities=15%  Similarity=0.007  Sum_probs=74.8

Q ss_pred             CeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC--CCCCccEEEEcCCCC
Q psy8015          28 LDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG--DNGPYDAIHVGAAYP  100 (165)
Q Consensus        28 ~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~--~~~~fD~I~i~~~~~  100 (165)
                      .+|||| ||+|+++..+++.  ..+|+++|+|+++++.||  +...+.++++++.+|+.+.+.  ..++||+|+++...+
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~  170 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG  170 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence            399999 9999999999984  348999999999999997  433334689999999865332  246899999986543


Q ss_pred             C-c---------hHHHHhccccCcEEEEEecC
Q psy8015         101 R-Y---------PEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus       101 ~-~---------p~~l~~~LkpgG~lvi~~~~  122 (165)
                      . .         -+.+.+.|+|||++++....
T Consensus       171 ~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~  202 (317)
T 3gjy_A          171 AITPQNFTTVEFFEHCHRGLAPGGLYVANCGD  202 (317)
T ss_dssp             SCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence            2 1         23578999999999998863

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.35  E-value=1.9e-12  Score=103.43  Aligned_cols=86  Identities=8%  Similarity=-0.068  Sum_probs=70.2

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGD   86 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~   86 (165)
                      +....++++.+. ..++++|||| ||+|.+|..+++...+|+++|+|++|++.|+  .+..+. +|++++++|+.+..  
T Consensus        14 ~~i~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~--   90 (285)
T 1zq9_A           14 PLIINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD--   90 (285)
T ss_dssp             HHHHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC--
T ss_pred             HHHHHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceeccc--
Confidence            456778888874 4789999999 9999999999999899999999999999996  444454 58999999997632  


Q ss_pred             CCCccEEEEcCCC
Q psy8015          87 NGPYDAIHVGAAY   99 (165)
Q Consensus        87 ~~~fD~I~i~~~~   99 (165)
                      ...||+|+++...
T Consensus        91 ~~~fD~vv~nlpy  103 (285)
T 1zq9_A           91 LPFFDTCVANLPY  103 (285)
T ss_dssp             CCCCSEEEEECCG
T ss_pred             chhhcEEEEecCc
Confidence            2379999996544

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.34  E-value=4e-12  Score=102.48  Aligned_cols=98  Identities=12%  Similarity=0.092  Sum_probs=75.6

Q ss_pred             CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cc----cCCCCCeEEEEccCCCCCC--CCCCccEE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SS----TIDPDHDYDLIADGRASFG--DNGPYDAI   93 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~----~~~~~nV~~~~gD~~~~~~--~~~~fD~I   93 (165)
                      .++.+|||| ||+|.++..+++.  ..+|+++|+|+++++.|+  +.    ....++++++.+|+.+...  ..++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            567899999 9999999999986  369999999999999996  31    1234679999999865332  25789999


Q ss_pred             EEcCCCCCch----------HHHHhccccCcEEEEEecC
Q psy8015          94 HVGAAYPRYP----------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        94 ~i~~~~~~~p----------~~l~~~LkpgG~lvi~~~~  122 (165)
                      +++...+..|          +.+.+.|||||++++..+.
T Consensus       174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  212 (304)
T 3bwc_A          174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGES  212 (304)
T ss_dssp             EEECC---------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence            9987654322          3578999999999997654

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.34  E-value=1.8e-12  Score=104.49  Aligned_cols=97  Identities=13%  Similarity=-0.001  Sum_probs=69.6

Q ss_pred             CCCeEEEE-ccccHHHH-HHhccCCcEEEEeCCHHHHHhcc--cccCCCC------CeEEEEccCCCC--------CCCC
Q psy8015          26 KRLDCLAL-TSNTKQST-TLPTFIPNSFNINVYYYLSGGPL--SSTIDPD------HDYDLIADGRAS--------FGDN   87 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~-~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~------nV~~~~gD~~~~--------~~~~   87 (165)
                      ++.+|||| ||+|..+. ++.....+|+++|+|++|++.|+  .+..+..      ++++.++|....        ..+.
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            47899999 99997554 44444578999999999999997  2222322      367888877211        1134


Q ss_pred             CCccEEEEcCCCCCc---------hHHHHhccccCcEEEEEecC
Q psy8015          88 GPYDAIHVGAAYPRY---------PEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        88 ~~fD~I~i~~~~~~~---------p~~l~~~LkpgG~lvi~~~~  122 (165)
                      ++||+|++..+.+.+         ..++.+.|||||++++....
T Consensus       128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~  171 (302)
T 2vdw_A          128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD  171 (302)
T ss_dssp             SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            689999987765422         23688999999999987764

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.34  E-value=4.7e-13  Score=111.29  Aligned_cols=99  Identities=9%  Similarity=-0.036  Sum_probs=79.1

Q ss_pred             CCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCC----CCCCccEEEE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFG----DNGPYDAIHV   95 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~----~~~~fD~I~i   95 (165)
                      .++++|||+ ||+|.++..+++. ..+|+++|+++++++.|+  ++..+++ |++++.+|+.+.++    ...+||+|++
T Consensus       216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~  295 (396)
T 2as0_A          216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  295 (396)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence            378999999 9999999999987 569999999999999996  5556776 89999999865332    1468999999


Q ss_pred             cCCCCC---------------chHHHHhccccCcEEEEEecCC
Q psy8015          96 GAAYPR---------------YPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        96 ~~~~~~---------------~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      +.....               +...+.+.|+|||++++.....
T Consensus       296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence            865421               1235679999999998876643

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.34  E-value=9.2e-12  Score=99.04  Aligned_cols=98  Identities=4%  Similarity=-0.136  Sum_probs=71.7

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCC-cEEEEeC-CHHHHHhcc--c-----ccCCCC-----CeEEEEccCCCC---CC-
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIP-NSFNINV-YYYLSGGPL--S-----STIDPD-----HDYDLIADGRAS---FG-   85 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~-~V~aiD~-~~~~~~~A~--~-----~~~~~~-----nV~~~~gD~~~~---~~-   85 (165)
                      .++.+|||+ ||+|.++..+++... +|+++|+ ++++++.|+  .     +..++.     +++++..|..+.   +. 
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR  157 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence            478899999 999999999998764 8999999 899999996  4     344443     788886654321   11 


Q ss_pred             --CCCCccEEEEcCCCCCch------HHHHhccc---c--CcEEEEEecC
Q psy8015          86 --DNGPYDAIHVGAAYPRYP------EIFIHHLK---S--GGRLVIPIGD  122 (165)
Q Consensus        86 --~~~~fD~I~i~~~~~~~p------~~l~~~Lk---p--gG~lvi~~~~  122 (165)
                        ..++||+|++.....+.+      +.+.+.|+   |  ||++++.+..
T Consensus       158 ~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~  207 (281)
T 3bzb_A          158 CTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTH  207 (281)
T ss_dssp             HHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC
T ss_pred             hccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEe
Confidence              246899999866665442      35778999   9  9998887654

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.34  E-value=1.8e-12  Score=104.30  Aligned_cols=108  Identities=14%  Similarity=0.066  Sum_probs=73.0

Q ss_pred             chHHHHHHHHHHhcC---CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEE-EccCCC-
Q psy8015          10 VSGAVAKYVTYLSGH---SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDL-IADGRA-   82 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~---~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~-~gD~~~-   82 (165)
                      ||+.--++.+.+...   .++.+|||+ ||||++|..|++.. ++|+|+|++++|++.+..+   ..++... ..|... 
T Consensus        66 vsrg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~---~~rv~~~~~~ni~~l  142 (291)
T 3hp7_A           66 VSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ---DDRVRSMEQYNFRYA  142 (291)
T ss_dssp             SSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT---CTTEEEECSCCGGGC
T ss_pred             ccchHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---CcccceecccCceec
Confidence            344444444444322   357899999 99999999888874 6999999999999885211   0122221 122211 


Q ss_pred             ---CCCCCCCccEEEEcCCCCCc---hHHHHhccccCcEEEEEec
Q psy8015          83 ---SFGDNGPYDAIHVGAAYPRY---PEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        83 ---~~~~~~~fD~I~i~~~~~~~---p~~l~~~LkpgG~lvi~~~  121 (165)
                         .++ ..+||.|+++.++..+   ..++.+.|||||++++.+.
T Consensus       143 ~~~~l~-~~~fD~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~lvk  186 (291)
T 3hp7_A          143 EPVDFT-EGLPSFASIDVSFISLNLILPALAKILVDGGQVVALVK  186 (291)
T ss_dssp             CGGGCT-TCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEEEC
T ss_pred             chhhCC-CCCCCEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEEEC
Confidence               122 2359999999887654   4678999999999999743

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.34  E-value=3.5e-12  Score=105.48  Aligned_cols=108  Identities=12%  Similarity=-0.033  Sum_probs=81.9

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASF   84 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~   84 (165)
                      +...+.++.+.  ..++.+|||+ ||+|.++..++....  +|+++|+|++|++.|+  ++..|+ ++++++++|+.+..
T Consensus       204 ~~la~~l~~~~--~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~  281 (373)
T 3tm4_A          204 ASIANAMIELA--ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLS  281 (373)
T ss_dssp             HHHHHHHHHHH--TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGG
T ss_pred             HHHHHHHHHhh--cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCC
Confidence            44455566665  4789999999 999999999999876  9999999999999996  666777 57999999997744


Q ss_pred             CCCCCccEEEEcCCCCC-------ch-------HHHHhccccCcEEEEEecC
Q psy8015          85 GDNGPYDAIHVGAAYPR-------YP-------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        85 ~~~~~fD~I~i~~~~~~-------~p-------~~l~~~LkpgG~lvi~~~~  122 (165)
                      .+.++||+|+++..+..       +.       +.+.+.|  ||++++....
T Consensus       282 ~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~  331 (373)
T 3tm4_A          282 QYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTE  331 (373)
T ss_dssp             GTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESC
T ss_pred             cccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECC
Confidence            44578999999866431       11       2344555  6777766653

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.34  E-value=6.3e-13  Score=101.01  Aligned_cols=92  Identities=7%  Similarity=-0.062  Sum_probs=73.8

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCCccEEEEcCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGPYDAIHVGAA   98 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~fD~I~i~~~   98 (165)
                      .+.++|||+ ||+|-+|..++...  .+|+++|+|++|++.|+  ++..|.. |+++  .|..... ..++||+|+..-.
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~-~~~~~DvVLa~k~  124 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDV-YKGTYDVVFLLKM  124 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHH-TTSEEEEEEEETC
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccC-CCCCcChhhHhhH
Confidence            568999999 99999999996653  38999999999999996  6667876 5766  6655443 3478999999988


Q ss_pred             CCCchH------HHHhccccCcEEEEE
Q psy8015          99 YPRYPE------IFIHHLKSGGRLVIP  119 (165)
Q Consensus        99 ~~~~p~------~l~~~LkpgG~lvi~  119 (165)
                      .|.+.+      .+++.|+|||.+|-.
T Consensus       125 LHlL~~~~~al~~v~~~L~pggvfISf  151 (200)
T 3fzg_A          125 LPVLKQQDVNILDFLQLFHTQNFVISF  151 (200)
T ss_dssp             HHHHHHTTCCHHHHHHTCEEEEEEEEE
T ss_pred             HHhhhhhHHHHHHHHHHhCCCCEEEEe
Confidence            887743      589999999876654

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.33  E-value=1.4e-12  Score=105.68  Aligned_cols=98  Identities=16%  Similarity=0.217  Sum_probs=77.5

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--ccc-----CCCCCeEEEEccCCCCCC-CCCCccE
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SST-----IDPDHDYDLIADGRASFG-DNGPYDA   92 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~-----~~~~nV~~~~gD~~~~~~-~~~~fD~   92 (165)
                      +.++.+|||| ||+|.++..+++.  ..+|+++|+|+++++.|+  +..     ++.++++++.+|+.+.++ ..++||+
T Consensus        75 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~  154 (314)
T 1uir_A           75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (314)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccE
Confidence            3567899999 9999999999987  468999999999999996  432     224689999999865322 2468999


Q ss_pred             EEEcCCCCC---c----------hHHHHhccccCcEEEEEec
Q psy8015          93 IHVGAAYPR---Y----------PEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        93 I~i~~~~~~---~----------p~~l~~~LkpgG~lvi~~~  121 (165)
                      |+++...+.   -          -+.+.+.|||||++++..+
T Consensus       155 Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  196 (314)
T 1uir_A          155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG  196 (314)
T ss_dssp             EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence            999876654   2          2367899999999999754

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.33  E-value=1.3e-12  Score=104.98  Aligned_cols=98  Identities=13%  Similarity=0.136  Sum_probs=75.0

Q ss_pred             CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cc----cCCCCCeEEEEccCCCCCC-CCCCccEEE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SS----TIDPDHDYDLIADGRASFG-DNGPYDAIH   94 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~----~~~~~nV~~~~gD~~~~~~-~~~~fD~I~   94 (165)
                      .++.+|||| ||+|..+..+++.  ..+|+++|+|+++++.|+  +.    .++.++++++.+|+.+.++ ..++||+|+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            456899999 9999999999987  368999999999999996  32    2234689999999865322 246899999


Q ss_pred             EcCCCC-C----------chHHHHhccccCcEEEEEecC
Q psy8015          95 VGAAYP-R----------YPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        95 i~~~~~-~----------~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      ++...+ .          +-+.+.+.|+|||++++..+.
T Consensus       169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  207 (296)
T 1inl_A          169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  207 (296)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence            976543 1          124678999999999997654

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.33  E-value=1.3e-12  Score=106.70  Aligned_cols=109  Identities=19%  Similarity=0.126  Sum_probs=82.4

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-------CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEcc
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-------PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIAD   79 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-------~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD   79 (165)
                      +...+..+++.+....++.+|||+ ||||.++..+++..       .+|+++|+++.+++.|+  +...|. ++.++.+|
T Consensus       114 i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D  192 (344)
T 2f8l_A          114 IGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQD  192 (344)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESC
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECC
Confidence            344445555555333567899999 99999998888764       57999999999999996  334465 78999999


Q ss_pred             CCCCCCCCCCccEEEEcCCCCCc------------------------hHHHHhccccCcEEEEEe
Q psy8015          80 GRASFGDNGPYDAIHVGAAYPRY------------------------PEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        80 ~~~~~~~~~~fD~I~i~~~~~~~------------------------p~~l~~~LkpgG~lvi~~  120 (165)
                      .....+ ..+||+|+.+..+..+                        .+.+.+.|+|||++++.+
T Consensus       193 ~l~~~~-~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~  256 (344)
T 2f8l_A          193 GLANLL-VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV  256 (344)
T ss_dssp             TTSCCC-CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCccc-cCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence            876443 4689999998764322                        234578999999999987

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.33  E-value=1e-11  Score=102.57  Aligned_cols=112  Identities=15%  Similarity=0.033  Sum_probs=83.0

Q ss_pred             hHHHHHHHHHHh-cCCCCCeEEEEccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC
Q psy8015          11 SGAVAKYVTYLS-GHSKRLDCLALTSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG   85 (165)
Q Consensus        11 ~~~~~~~l~~l~-~~~~~~~vLei~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~   85 (165)
                      +...++++.... ...++++|||++|+|.++..+++..  .+|+++|+|++|++.|+  ++..|++||+++.+|+.+.++
T Consensus       156 ~~~~~~~l~~~~~~~~~~~~VLDlGG~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~  235 (373)
T 2qm3_A          156 ETTVARVILMHTRGDLENKDIFVLGDDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLP  235 (373)
T ss_dssp             HHHHHHHHHHHHTTCSTTCEEEEESCTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCC
T ss_pred             HHHHHHHHHHhhcCCCCCCEEEEECCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhch
Confidence            344444543322 1236899999999999999998875  58999999999999996  555677789999999987554


Q ss_pred             C--CCCccEEEEcCCCCC-----chHHHHhccccCcEE-EEEecC
Q psy8015          86 D--NGPYDAIHVGAAYPR-----YPEIFIHHLKSGGRL-VIPIGD  122 (165)
Q Consensus        86 ~--~~~fD~I~i~~~~~~-----~p~~l~~~LkpgG~l-vi~~~~  122 (165)
                      .  .++||+|+++.....     +.+.+.+.|||||++ ++.+..
T Consensus       236 ~~~~~~fD~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          236 DYALHKFDTFITDPPETLEAIRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             TTTSSCBSEEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             hhccCCccEEEECCCCchHHHHHHHHHHHHHcccCCeEEEEEEec
Confidence            3  358999999865431     224678999999954 555544

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.32  E-value=6.8e-12  Score=102.00  Aligned_cols=92  Identities=11%  Similarity=-0.136  Sum_probs=71.7

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      .++.+|||+ ||+|.++..+++.. .+|+++|.+ .|++.|+  .+..+.. +++++.+|+.+...+.++||+|++....
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~  115 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence            578999999 99999999999875 589999999 5999886  5555664 5999999987643334789999987432


Q ss_pred             C-----CchH----HHHhccccCcEEE
Q psy8015         100 P-----RYPE----IFIHHLKSGGRLV  117 (165)
Q Consensus       100 ~-----~~p~----~l~~~LkpgG~lv  117 (165)
                      .     ..++    .+.+.|||||+++
T Consensus       116 ~~l~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          116 YFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             hhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence            2     2232    3458999999987

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.32  E-value=1.6e-12  Score=105.61  Aligned_cols=98  Identities=12%  Similarity=0.056  Sum_probs=76.2

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccC--C--CCCeEEEEccCCCCCC-CCCCccEEE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTI--D--PDHDYDLIADGRASFG-DNGPYDAIH   94 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~--~--~~nV~~~~gD~~~~~~-~~~~fD~I~   94 (165)
                      .+..+|||| ||+|+++..+++..  .+|+++|+|+++++.|+  ++..  +  .++++++.+|+.+.++ ..++||+|+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            567899999 99999999999873  69999999999999997  4432  2  3579999999865322 246899999


Q ss_pred             EcCCCC----------CchHHHHhccccCcEEEEEecC
Q psy8015          95 VGAAYP----------RYPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        95 i~~~~~----------~~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      ++...+          .+-+.+.+.|+|||++++..+.
T Consensus       187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~  224 (314)
T 2b2c_A          187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES  224 (314)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCC
Confidence            987432          2234678999999999997643

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.32  E-value=1.7e-13  Score=114.17  Aligned_cols=104  Identities=9%  Similarity=-0.029  Sum_probs=76.6

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCe--EEEEccCCCCCCCCCCcc
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHD--YDLIADGRASFGDNGPYD   91 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV--~~~~gD~~~~~~~~~~fD   91 (165)
                      ..+++.+. ..++.+|||| ||+|.++..+++...+|+++|+|+++++.|+.+  +.++.  .+..+++.....+.++||
T Consensus        97 ~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~~~fD  173 (416)
T 4e2x_A           97 RDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK--GIRVRTDFFEKATADDVRRTEGPAN  173 (416)
T ss_dssp             HHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT--TCCEECSCCSHHHHHHHHHHHCCEE
T ss_pred             HHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc--CCCcceeeechhhHhhcccCCCCEE
Confidence            34444443 3578999999 999999999999888999999999999999743  33321  122233322111247899


Q ss_pred             EEEEcCCCCCchH------HHHhccccCcEEEEEec
Q psy8015          92 AIHVGAAYPRYPE------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        92 ~I~i~~~~~~~p~------~l~~~LkpgG~lvi~~~  121 (165)
                      +|++....+++++      ++.+.|||||++++...
T Consensus       174 ~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  209 (416)
T 4e2x_A          174 VIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDP  209 (416)
T ss_dssp             EEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            9999999887763      67899999999999754

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.32  E-value=5.4e-12  Score=100.70  Aligned_cols=108  Identities=12%  Similarity=0.009  Sum_probs=76.8

Q ss_pred             CchHHHHHHHHHHhc--CCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhccccc---CCC-CCeEEE--Ecc
Q psy8015           9 SVSGAVAKYVTYLSG--HSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSST---IDP-DHDYDL--IAD   79 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~--~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~---~~~-~nV~~~--~gD   79 (165)
                      -+++...++.+++..  ..++++|||+ ||+|.++..+++. ++|+++|+++ |+..|+.+.   ... .|++++  ++|
T Consensus        63 ~~sR~a~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D  140 (276)
T 2wa2_A           63 AVSRGTAKLAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVD  140 (276)
T ss_dssp             --CHHHHHHHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCC
T ss_pred             cCchHHHHHHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCc
Confidence            355666666655542  2578999999 9999999999998 8999999999 655443111   111 179999  899


Q ss_pred             CCCCCCCCCCccEEEEcCCCCCc-------------hHHHHhccccCc--EEEEEec
Q psy8015          80 GRASFGDNGPYDAIHVGAAYPRY-------------PEIFIHHLKSGG--RLVIPIG  121 (165)
Q Consensus        80 ~~~~~~~~~~fD~I~i~~~~~~~-------------p~~l~~~LkpgG--~lvi~~~  121 (165)
                      +.+ ++ .++||+|+++.+ ...             .+.+.+.|||||  ++++-+-
T Consensus       141 ~~~-l~-~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~  194 (276)
T 2wa2_A          141 VTK-ME-PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL  194 (276)
T ss_dssp             GGG-CC-CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             Hhh-CC-CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence            865 34 468999999876 221             234568899999  8888543

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.31  E-value=9.9e-13  Score=104.69  Aligned_cols=97  Identities=7%  Similarity=-0.029  Sum_probs=69.5

Q ss_pred             CCCCeEEEE-ccccHHHHHHh----ccC--Cc--EEEEeCCHHHHHhcc--ccc-CCCCCeEEE--EccCCCCC------
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLP----TFI--PN--SFNINVYYYLSGGPL--SST-IDPDHDYDL--IADGRASF------   84 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la----~~~--~~--V~aiD~~~~~~~~A~--~~~-~~~~nV~~~--~gD~~~~~------   84 (165)
                      .++.+|||| ||+|.++..+.    ...  .+  ++++|.|++|++.|+  .+. .+++|+++.  .+++....      
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            467899999 99998775332    222  23  399999999999996  322 256677665  44443211      


Q ss_pred             CCCCCccEEEEcCCCCCchH------HHHhccccCcEEEEEec
Q psy8015          85 GDNGPYDAIHVGAAYPRYPE------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        85 ~~~~~fD~I~i~~~~~~~p~------~l~~~LkpgG~lvi~~~  121 (165)
                      .+.++||+|++....+++++      ++.+.|||||++++...
T Consensus       131 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~  173 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV  173 (292)
T ss_dssp             TCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            12478999999999987763      57899999999999754

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.31  E-value=3.4e-12  Score=101.23  Aligned_cols=107  Identities=9%  Similarity=-0.053  Sum_probs=74.9

Q ss_pred             HHHHHHHHhcC-CCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCC--C------C---------
Q psy8015          14 VAKYVTYLSGH-SKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTID--P------D---------   71 (165)
Q Consensus        14 ~~~~l~~l~~~-~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~--~------~---------   71 (165)
                      ...+.+++... .++.+|||| ||+|..+..++.. ..+|+++|+|++|++.|+  ++...  .      .         
T Consensus        58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~  137 (289)
T 2g72_A           58 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG  137 (289)
T ss_dssp             HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred             HHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcc
Confidence            44566666431 368999999 9999965555543 569999999999999885  22110  0      0         


Q ss_pred             -------------CeEEEEccCCCCCC------CCCCccEEEEcCCCCC----ch------HHHHhccccCcEEEEEe
Q psy8015          72 -------------HDYDLIADGRASFG------DNGPYDAIHVGAAYPR----YP------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        72 -------------nV~~~~gD~~~~~~------~~~~fD~I~i~~~~~~----~p------~~l~~~LkpgG~lvi~~  120 (165)
                                   .++++.+|+.+..+      +.++||+|++....++    ++      .++.+.|||||++++..
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~  215 (289)
T 2g72_A          138 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG  215 (289)
T ss_dssp             CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                         15677778866222      1356999999988765    33      25789999999999963

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.31  E-value=4.3e-12  Score=102.13  Aligned_cols=88  Identities=9%  Similarity=0.012  Sum_probs=68.7

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD   86 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~   86 (165)
                      .+....++++.+. ..++++|||+ ||+|.+|..|++...+|+++|+|++|++.|+  .+..+.+|++++.+|+....  
T Consensus        27 ~~~i~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~--  103 (299)
T 2h1r_A           27 NPGILDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTV--  103 (299)
T ss_dssp             CHHHHHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSC--
T ss_pred             CHHHHHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCC--
Confidence            3556778888875 4789999999 9999999999998889999999999999996  44456789999999987632  


Q ss_pred             CCCccEEEEcCCCC
Q psy8015          87 NGPYDAIHVGAAYP  100 (165)
Q Consensus        87 ~~~fD~I~i~~~~~  100 (165)
                      ..+||+|+++....
T Consensus       104 ~~~~D~Vv~n~py~  117 (299)
T 2h1r_A          104 FPKFDVCTANIPYK  117 (299)
T ss_dssp             CCCCSEEEEECCGG
T ss_pred             cccCCEEEEcCCcc
Confidence            24799999975543

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.31  E-value=5.4e-12  Score=100.14  Aligned_cols=106  Identities=14%  Similarity=0.051  Sum_probs=76.8

Q ss_pred             chHHHHHHHHHHhc--CCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccc-----cCCCCCeEEE--Ecc
Q psy8015          10 VSGAVAKYVTYLSG--HSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSS-----TIDPDHDYDL--IAD   79 (165)
Q Consensus        10 ~~~~~~~~l~~l~~--~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~-----~~~~~nV~~~--~gD   79 (165)
                      +++...++.+.+..  ..++++|||+ ||+|.++..+++. ++|+++|+++ |+..++.+     ..+ .|++++  ++|
T Consensus        56 ~sR~a~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D  132 (265)
T 2oxt_A           56 VSRGTAKLAWMEERGYVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEVPRITESYG-WNIVKFKSRVD  132 (265)
T ss_dssp             SSTHHHHHHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCCCCCCCBTT-GGGEEEECSCC
T ss_pred             cchHHHHHHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhhhhhhhccC-CCeEEEecccC
Confidence            45555555555432  3678999999 9999999999998 8999999999 65444311     111 179999  899


Q ss_pred             CCCCCCCCCCccEEEEcCCCCC-------------chHHHHhccccCc--EEEEEec
Q psy8015          80 GRASFGDNGPYDAIHVGAAYPR-------------YPEIFIHHLKSGG--RLVIPIG  121 (165)
Q Consensus        80 ~~~~~~~~~~fD~I~i~~~~~~-------------~p~~l~~~LkpgG--~lvi~~~  121 (165)
                      +.+ ++ .++||+|+++.+ ..             ..+.+.+.|||||  .+++-+-
T Consensus       133 ~~~-l~-~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~  186 (265)
T 2oxt_A          133 IHT-LP-VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL  186 (265)
T ss_dssp             TTT-SC-CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             HhH-CC-CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence            875 33 468999999876 22             1234568999999  8888553

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.31  E-value=3.2e-12  Score=103.57  Aligned_cols=77  Identities=6%  Similarity=-0.075  Sum_probs=64.8

Q ss_pred             cCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC---CCCccEE
Q psy8015          23 GHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD---NGPYDAI   93 (165)
Q Consensus        23 ~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~---~~~fD~I   93 (165)
                      ...++++|||+ ||+|..|..+|...   ++|+++|+++++++.++  ++++|++|++++++|+.+..+.   ..+||+|
T Consensus        99 ~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~V  178 (309)
T 2b9e_A           99 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYI  178 (309)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEE
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEE
Confidence            45889999999 99999999999863   68999999999999996  7778888999999998764332   1579999


Q ss_pred             EEcCCC
Q psy8015          94 HVGAAY   99 (165)
Q Consensus        94 ~i~~~~   99 (165)
                      +++..+
T Consensus       179 l~D~Pc  184 (309)
T 2b9e_A          179 LLDPSC  184 (309)
T ss_dssp             EECCCC
T ss_pred             EEcCCc
Confidence            997543

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.31  E-value=2.3e-11  Score=99.88  Aligned_cols=95  Identities=8%  Similarity=-0.042  Sum_probs=77.3

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCC-CCCCCccEEEEcC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASF-GDNGPYDAIHVGA   97 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~-~~~~~fD~I~i~~   97 (165)
                      .+..+|||| ||+|..+..+++..  .+|+++|+ +++++.|+  ++..+. ++|+++.+|..+.. +-.++||+|++..
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~  256 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQ  256 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEES
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEec
Confidence            467899999 99999999999864  47999999 99999996  555565 47999999987642 1126899999999


Q ss_pred             CCCCchH--------HHHhccccCcEEEEEe
Q psy8015          98 AYPRYPE--------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        98 ~~~~~p~--------~l~~~LkpgG~lvi~~  120 (165)
                      ..++.++        ++.+.|||||++++..
T Consensus       257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (363)
T 3dp7_A          257 FLDCFSEEEVISILTRVAQSIGKDSKVYIME  287 (363)
T ss_dssp             CSTTSCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            8886653        4678999999999865

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.31  E-value=6.8e-12  Score=102.77  Aligned_cols=102  Identities=10%  Similarity=-0.022  Sum_probs=81.2

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCC
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGP   89 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~   89 (165)
                      .+++.+. ..++.+|||| ||+|.++..+++..  .+++++|+ +++++.|+  ++..++. +++++.+|..+.++.  .
T Consensus       173 ~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~  248 (374)
T 1qzz_A          173 APADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPV--T  248 (374)
T ss_dssp             HHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC--C
T ss_pred             HHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCC--C
Confidence            3444442 3678999999 99999999999875  48999999 99999996  4555665 799999998765543  4


Q ss_pred             ccEEEEcCCCCCchH--------HHHhccccCcEEEEEec
Q psy8015          90 YDAIHVGAAYPRYPE--------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        90 fD~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~~  121 (165)
                      ||+|++....++.++        ++.+.|||||++++...
T Consensus       249 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          249 ADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            999999988876553        46899999999998654

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.31  E-value=1.6e-11  Score=101.04  Aligned_cols=101  Identities=9%  Similarity=-0.015  Sum_probs=81.1

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCCCC
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDNGP   89 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~~~   89 (165)
                      .+++.+. ..++.+|||| ||+|.++..+++..  .+++++|+ +++++.|+  +...++ ++|+++.+|....++.  .
T Consensus       193 ~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~--~  268 (369)
T 3gwz_A          193 QVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIPD--G  268 (369)
T ss_dssp             HHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCS--S
T ss_pred             HHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCCC--C
Confidence            4444442 3678999999 99999999999875  38999999 99999996  455565 5799999998755443  7


Q ss_pred             ccEEEEcCCCCCchH--------HHHhccccCcEEEEEe
Q psy8015          90 YDAIHVGAAYPRYPE--------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        90 fD~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~  120 (165)
                      ||+|++....++.++        .+.+.|||||++++..
T Consensus       269 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e  307 (369)
T 3gwz_A          269 ADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVID  307 (369)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             ceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            999999988876653        4678999999999964

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.30  E-value=3.9e-12  Score=101.55  Aligned_cols=97  Identities=16%  Similarity=0.077  Sum_probs=76.5

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCC----CCCeEEEEccCCCCCC-CCCCccEEE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTID----PDHDYDLIADGRASFG-DNGPYDAIH   94 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~----~~nV~~~~gD~~~~~~-~~~~fD~I~   94 (165)
                      .++++|||| ||+|..+..+++..  .+|+++|+|+++++.|+  +...+    .++++++.+|+.+.++ ..++||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            567899999 99999999999874  68999999999999996  44332    4689999999865322 246899999


Q ss_pred             EcCCCCCc----------hHHHHhccccCcEEEEEec
Q psy8015          95 VGAAYPRY----------PEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        95 i~~~~~~~----------p~~l~~~LkpgG~lvi~~~  121 (165)
                      ++...+.-          -+.+.+.|+|||++++...
T Consensus       157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  193 (283)
T ss_dssp             EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence            98654422          2357899999999999864

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.30  E-value=1.6e-11  Score=100.34  Aligned_cols=103  Identities=13%  Similarity=-0.024  Sum_probs=81.9

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCCCC
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFGDN   87 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~~~   87 (165)
                      ...+++.+. ..++.+|||| ||+|.++..+++..  .+++++|+ +++++.|+  ++..+..+ ++++.+|..+...  
T Consensus       179 ~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--  254 (359)
T 1x19_A          179 IQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY--  254 (359)
T ss_dssp             HHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC--
T ss_pred             HHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC--
Confidence            345666653 4678999999 99999999999875  48999999 99999996  55556655 9999999876422  


Q ss_pred             CCccEEEEcCCCCCchH--------HHHhccccCcEEEEEe
Q psy8015          88 GPYDAIHVGAAYPRYPE--------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        88 ~~fD~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~  120 (165)
                      ..+|+|++....++.++        .+.+.|||||++++..
T Consensus       255 ~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          255 PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             CCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             CCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            23599999988876653        4688999999998865

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.28  E-value=9.2e-12  Score=101.24  Aligned_cols=98  Identities=15%  Similarity=0.117  Sum_probs=76.2

Q ss_pred             CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--ccc----CCCCCeEEEEccCCCCCC-CCCCccEEE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SST----IDPDHDYDLIADGRASFG-DNGPYDAIH   94 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~----~~~~nV~~~~gD~~~~~~-~~~~fD~I~   94 (165)
                      .++.+|||| ||+|..+..+++.  ..+|+++|+|+++++.|+  ++.    ++.++++++.+|+.+..+ ..++||+|+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            567899999 9999999999987  368999999999999996  333    223579999999865321 246899999


Q ss_pred             EcCCCCC----------chHHHHhccccCcEEEEEecC
Q psy8015          95 VGAAYPR----------YPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        95 i~~~~~~----------~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      ++...+.          +-+.+.+.|||||++++....
T Consensus       195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES  232 (321)
T ss_dssp             EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            9864331          124578999999999997643

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.28  E-value=9.1e-12  Score=92.80  Aligned_cols=101  Identities=13%  Similarity=-0.016  Sum_probs=72.8

Q ss_pred             HHHHHHHHH---hcCCCCCeEEEE-ccccHHHHHHhccC-----------CcEEEEeCCHHHHHhcccccCCCCCeEEE-
Q psy8015          13 AVAKYVTYL---SGHSKRLDCLAL-TSNTKQSTTLPTFI-----------PNSFNINVYYYLSGGPLSSTIDPDHDYDL-   76 (165)
Q Consensus        13 ~~~~~l~~l---~~~~~~~~vLei-~GsG~~t~~la~~~-----------~~V~aiD~~~~~~~~A~~~~~~~~nV~~~-   76 (165)
                      +.-+++++.   ..+.++.+|||+ ||+|.++..+++..           .+|+++|+++.+         ...+++++ 
T Consensus         6 ~~~kl~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~~~~~~~~~   76 (196)
T 2nyu_A            6 SAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------PLEGATFLC   76 (196)
T ss_dssp             HHHHHHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------CCTTCEEEC
T ss_pred             HHHHHHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------cCCCCeEEE
Confidence            444555543   223689999999 99999999999875           679999999832         23578888 


Q ss_pred             EccCCCCC--------CCCCCccEEEEcCCCCC-----------------chHHHHhccccCcEEEEEecC
Q psy8015          77 IADGRASF--------GDNGPYDAIHVGAAYPR-----------------YPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        77 ~gD~~~~~--------~~~~~fD~I~i~~~~~~-----------------~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      .+|.....        .+.++||+|+++...+.                 +.+.+.+.|||||++++....
T Consensus        77 ~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  147 (196)
T 2nyu_A           77 PADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA  147 (196)
T ss_dssp             SCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             eccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence            88875421        12357999999765432                 123467899999999998653

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.28  E-value=1.1e-11  Score=100.31  Aligned_cols=94  Identities=6%  Similarity=-0.048  Sum_probs=77.8

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCCCCccEEEEcCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDNGPYDAIHVGAA   98 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~~~fD~I~i~~~   98 (165)
                      .+..+|||| ||+|..+..+++..  .+++++|+ +++++.|+  ++..++ ++|+++.+|....++.  +||+|++...
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~--~~D~v~~~~v  244 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPA--GAGGYVLSAV  244 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC--SCSEEEEESC
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCC--CCcEEEEehh
Confidence            356899999 99999999998865  47999999 99999996  555565 5799999998755543  7999999998


Q ss_pred             CCCchH--------HHHhccccCcEEEEEec
Q psy8015          99 YPRYPE--------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        99 ~~~~p~--------~l~~~LkpgG~lvi~~~  121 (165)
                      .++.++        ++.+.|+|||++++...
T Consensus       245 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  275 (332)
T 3i53_A          245 LHDWDDLSAVAILRRCAEAAGSGGVVLVIEA  275 (332)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             hccCCHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence            887664        46899999999999654

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.27  E-value=1.4e-11  Score=98.30  Aligned_cols=97  Identities=15%  Similarity=0.115  Sum_probs=72.4

Q ss_pred             CCCeEEEE-ccccH----HHHHHhccC------CcEEEEeCCHHHHHhccccc-------------------------CC
Q psy8015          26 KRLDCLAL-TSNTK----QSTTLPTFI------PNSFNINVYYYLSGGPLSST-------------------------ID   69 (165)
Q Consensus        26 ~~~~vLei-~GsG~----~t~~la~~~------~~V~aiD~~~~~~~~A~~~~-------------------------~~   69 (165)
                      +..+|||+ ||||.    ++..|+...      .+|+|+|+|++|++.|+...                         .|
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999 99997    666676542      27999999999999996210                         01


Q ss_pred             --------CCCeEEEEccCCCC-CCCCCCccEEEEcCCCCCch--------HHHHhccccCcEEEEEecC
Q psy8015          70 --------PDHDYDLIADGRAS-FGDNGPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        70 --------~~nV~~~~gD~~~~-~~~~~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~~~  122 (165)
                              .++|+|.++|..+. ++..++||+|+|.....+++        ..+.+.|+|||.|++-..+
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~sE  254 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSE  254 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEecc
Confidence                    03699999998763 33346899999987765443        2468999999999985543

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.27  E-value=1.6e-11  Score=92.91  Aligned_cols=91  Identities=11%  Similarity=0.023  Sum_probs=71.4

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEE
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAI   93 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I   93 (165)
                      ..+++.+....++.+|||+ ||+|.++..++   .+|+++|+++.             +++++.+|+.+...+.++||+|
T Consensus        56 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~---~~v~~~D~s~~-------------~~~~~~~d~~~~~~~~~~fD~v  119 (215)
T 2zfu_A           56 DRIARDLRQRPASLVVADFGCGDCRLASSIR---NPVHCFDLASL-------------DPRVTVCDMAQVPLEDESVDVA  119 (215)
T ss_dssp             HHHHHHHHTSCTTSCEEEETCTTCHHHHHCC---SCEEEEESSCS-------------STTEEESCTTSCSCCTTCEEEE
T ss_pred             HHHHHHHhccCCCCeEEEECCcCCHHHHHhh---ccEEEEeCCCC-------------CceEEEeccccCCCCCCCEeEE
Confidence            3467777655678999999 99999998874   78999999987             5678889987633345789999


Q ss_pred             EEcCCCCCc-----hHHHHhccccCcEEEEEec
Q psy8015          94 HVGAAYPRY-----PEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        94 ~i~~~~~~~-----p~~l~~~LkpgG~lvi~~~  121 (165)
                      ++....+..     .+++.+.|+|||++++...
T Consensus       120 ~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~  152 (215)
T 2zfu_A          120 VFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEV  152 (215)
T ss_dssp             EEESCCCSSCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEehhccccCHHHHHHHHHHhCCCCeEEEEEEc
Confidence            998887531     2467899999999999653

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.27  E-value=1.6e-11  Score=100.11  Aligned_cols=102  Identities=11%  Similarity=0.030  Sum_probs=80.7

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCC
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGP   89 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~   89 (165)
                      .+++.+. ..++.+|||| ||+|.++..+++..  .+++++|+ +++++.|+  ++..+.. +++++.+|..+.++.  .
T Consensus       174 ~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~  249 (360)
T 1tw3_A          174 APAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPR--K  249 (360)
T ss_dssp             HHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSS--C
T ss_pred             HHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCC--C
Confidence            4455553 3678999999 99999999999875  37889999 99999996  4555664 799999998765543  4


Q ss_pred             ccEEEEcCCCCCchH--------HHHhccccCcEEEEEec
Q psy8015          90 YDAIHVGAAYPRYPE--------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        90 fD~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~~  121 (165)
                      ||+|++....++.++        ++.+.|||||++++...
T Consensus       250 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  289 (360)
T 1tw3_A          250 ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER  289 (360)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEE
Confidence            999999988876553        46899999999998643

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.27  E-value=1.1e-11  Score=102.98  Aligned_cols=91  Identities=12%  Similarity=-0.062  Sum_probs=69.5

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCCccEEEEcCC-
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGPYDAIHVGAA-   98 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~fD~I~i~~~-   98 (165)
                      .++++|||| ||||.++..+|+.+ .+|+|+|.++ |++.|+  .+..|+. +|+++++|..+... .++||+|++... 
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~l-pe~~DvivsE~~~  159 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVEL-PEQVDAIVSEWMG  159 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCC-SSCEEEEECCCCB
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecC-CccccEEEeeccc
Confidence            378999999 99999999888875 6899999996 888886  5566775 49999999876322 368999987322 


Q ss_pred             --C-C-CchH----HHHhccccCcEEE
Q psy8015          99 --Y-P-RYPE----IFIHHLKSGGRLV  117 (165)
Q Consensus        99 --~-~-~~p~----~l~~~LkpgG~lv  117 (165)
                        . . .+.+    ...++|||||+++
T Consensus       160 ~~l~~e~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          160 YGLLHESMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             TTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccccchhhhHHHHHHhhCCCCceEC
Confidence              1 1 2322    4468999999875

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.26  E-value=2.1e-11  Score=98.19  Aligned_cols=105  Identities=8%  Similarity=0.022  Sum_probs=81.8

Q ss_pred             HHHHHHHHhcC--CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCC
Q psy8015          14 VAKYVTYLSGH--SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFG   85 (165)
Q Consensus        14 ~~~~l~~l~~~--~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~   85 (165)
                      ...+++.+. .  .++.+|||+ ||+|..+..+++..  .+++++|++ .+++.|+  ++..++. +++++.+|..+...
T Consensus       152 ~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  229 (335)
T 2r3s_A          152 AQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY  229 (335)
T ss_dssp             HHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC
T ss_pred             HHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC
Confidence            345666663 3  578999999 99999999999874  589999999 9999996  4445654 59999999876322


Q ss_pred             CCCCccEEEEcCCCCCch--------HHHHhccccCcEEEEEec
Q psy8015          86 DNGPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        86 ~~~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~~  121 (165)
                       ...||+|++....++.+        ..+.+.|+|||++++...
T Consensus       230 -~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  272 (335)
T 2r3s_A          230 -GNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDF  272 (335)
T ss_dssp             -CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             -CCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEee
Confidence             23499999988877663        246899999999998654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.26  E-value=1.2e-11  Score=110.06  Aligned_cols=108  Identities=13%  Similarity=0.048  Sum_probs=82.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCC--CeEEEEccCCCCCC-
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPD--HDYDLIADGRASFG-   85 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~--nV~~~~gD~~~~~~-   85 (165)
                      ...+++..+   .++++|||+ ||||.++..++... .+|+++|+|+.+++.|+  ++..|++  +++++++|+.+.++ 
T Consensus       529 ~~r~~l~~~---~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~  605 (703)
T 3v97_A          529 IARRMLGQM---SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLRE  605 (703)
T ss_dssp             HHHHHHHHH---CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHH
T ss_pred             HHHHHHHHh---cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHh
Confidence            344444443   478999999 99999999988765 46999999999999996  5556665  79999999876332 


Q ss_pred             CCCCccEEEEcCCCC----------C-------chHHHHhccccCcEEEEEecCC
Q psy8015          86 DNGPYDAIHVGAAYP----------R-------YPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        86 ~~~~fD~I~i~~~~~----------~-------~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      ..++||+|+++...-          .       +...+.+.|+|||+|++.+...
T Consensus       606 ~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~  660 (703)
T 3v97_A          606 ANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKR  660 (703)
T ss_dssp             CCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             cCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence            246899999986431          1       1235679999999999988763

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.26  E-value=5.2e-12  Score=109.73  Aligned_cols=95  Identities=12%  Similarity=-0.032  Sum_probs=78.9

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC--CCCCCCccEEEEcCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS--FGDNGPYDAIHVGAAY   99 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~--~~~~~~fD~I~i~~~~   99 (165)
                      .++.+|||| ||+|.++..||+.+.+|++||.++++++.||  .++.|..||+++++++.+.  ..+.++||+|++...+
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~  144 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVF  144 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred             CCCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcch
Confidence            457899999 9999999999999999999999999999997  4445656899999998653  1235789999999999


Q ss_pred             CCchH--------HHHhccccCcEEEEE
Q psy8015         100 PRYPE--------IFIHHLKSGGRLVIP  119 (165)
Q Consensus       100 ~~~p~--------~l~~~LkpgG~lvi~  119 (165)
                      +++++        .+++.|+++|+.++.
T Consensus       145 ehv~~~~~~~~~~~~~~tl~~~~~~~~~  172 (569)
T 4azs_A          145 HHIVHLHGIDEVKRLLSRLADVTQAVIL  172 (569)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHSSEEEE
T ss_pred             hcCCCHHHHHHHHHHHHHhccccceeeE
Confidence            88874        356778888887764

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.23  E-value=2.2e-10  Score=86.08  Aligned_cols=101  Identities=8%  Similarity=-0.090  Sum_probs=74.0

Q ss_pred             HHHHHHHHHhc--CCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC
Q psy8015          13 AVAKYVTYLSG--HSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD   86 (165)
Q Consensus        13 ~~~~~l~~l~~--~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~   86 (165)
                      ...+++..+..  ..++.+|||+ ||+|.++..+++.. .+|+++|+++++++.|+  .+..+. +++++++|+.+ ++ 
T Consensus        34 ~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~-~~-  110 (207)
T 1wy7_A           34 AASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSE-FN-  110 (207)
T ss_dssp             HHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGG-CC-
T ss_pred             HHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHH-cC-
Confidence            34455544431  2478999999 99999999999874 57999999999999996  555566 89999999876 33 


Q ss_pred             CCCccEEEEcCCCCCch--------HHHHhccccCcEEEEEe
Q psy8015          87 NGPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        87 ~~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~  120 (165)
                       .+||+|+++.......        +.+.+.|   |.+++.+
T Consensus       111 -~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l---~~~~~~~  148 (207)
T 1wy7_A          111 -SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS---DVVYSIH  148 (207)
T ss_dssp             -CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC---SEEEEEE
T ss_pred             -CCCCEEEEcCCCccccCCchHHHHHHHHHhc---CcEEEEE
Confidence             4899999987654321        3344555   5555555

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.23  E-value=5e-11  Score=97.21  Aligned_cols=100  Identities=7%  Similarity=-0.106  Sum_probs=76.8

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCC-CCeEEEEccCCCCCCCCCCcc
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDP-DHDYDLIADGRASFGDNGPYD   91 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~-~nV~~~~gD~~~~~~~~~~fD   91 (165)
                      .+++.+. ..++.+|||| ||+|..+..+++...  +++++|+ +.+++.++.+..+. ++++++.+|..+..+   +||
T Consensus       175 ~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p---~~D  249 (348)
T 3lst_A          175 ILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVARHRLDAPDVAGRWKVVEGDFLREVP---HAD  249 (348)
T ss_dssp             HHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHTTCCCCCGGGTTSEEEEECCTTTCCC---CCS
T ss_pred             HHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhhcccccccCCCCCeEEEecCCCCCCC---CCc
Confidence            4445543 4678999999 999999999998763  6899999 55555444444444 469999999875444   799


Q ss_pred             EEEEcCCCCCchH--------HHHhccccCcEEEEEe
Q psy8015          92 AIHVGAAYPRYPE--------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        92 ~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~  120 (165)
                      +|++....++.++        ++.+.|||||++++..
T Consensus       250 ~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e  286 (348)
T 3lst_A          250 VHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVID  286 (348)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred             EEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            9999998887664        4789999999999865

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.23  E-value=2.4e-11  Score=98.18  Aligned_cols=101  Identities=9%  Similarity=-0.032  Sum_probs=79.2

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCCC
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDNG   88 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~~   88 (165)
                      ..+++.+. ..+ .+|||+ ||+|..+..+++..  .+++++|+ +++++.|+  ++..++ ++++++.+|..+..+  .
T Consensus       158 ~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~  232 (334)
T 2ip2_A          158 HEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEVP--S  232 (334)
T ss_dssp             HHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCCC--S
T ss_pred             HHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCCC--C
Confidence            34555442 345 899999 99999999999874  48999999 99999996  433343 479999999877443  5


Q ss_pred             CccEEEEcCCCCCchH--------HHHhccccCcEEEEEe
Q psy8015          89 PYDAIHVGAAYPRYPE--------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        89 ~fD~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~  120 (165)
                      .||+|++....++.++        .+.+.|+|||++++..
T Consensus       233 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e  272 (334)
T 2ip2_A          233 NGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIE  272 (334)
T ss_dssp             SCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            7999999988875542        4689999999999974

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.23  E-value=1.4e-11  Score=97.26  Aligned_cols=84  Identities=13%  Similarity=-0.018  Sum_probs=66.8

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC-CCC--
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS-FGD--   86 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~-~~~--   86 (165)
                      +....++++.+. ..++++|||| ||+|++|..|++.+.+|+++|+|++|++.++.+....+|++++++|+.+. +++  
T Consensus        15 ~~i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~   93 (255)
T 3tqs_A           15 SFVLQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVK   93 (255)
T ss_dssp             HHHHHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSC
T ss_pred             HHHHHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhc
Confidence            456778888885 4789999999 99999999999998999999999999999962222256899999999763 222  


Q ss_pred             -CCCccEEEEc
Q psy8015          87 -NGPYDAIHVG   96 (165)
Q Consensus        87 -~~~fD~I~i~   96 (165)
                       .++|| |+.+
T Consensus        94 ~~~~~~-vv~N  103 (255)
T 3tqs_A           94 TDKPLR-VVGN  103 (255)
T ss_dssp             CSSCEE-EEEE
T ss_pred             cCCCeE-EEec
Confidence             24688 5553

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.23  E-value=2e-11  Score=104.22  Aligned_cols=99  Identities=10%  Similarity=-0.078  Sum_probs=75.0

Q ss_pred             HHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCCCCcc
Q psy8015          17 YVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDNGPYD   91 (165)
Q Consensus        17 ~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~~~fD   91 (165)
                      +++.+.. .++.+|||| ||+|.++..+++.. .+|+++|+++ +++.|+  .+..++ ++|+++.+|..+. +..++||
T Consensus       150 il~~l~~-~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~-~~~~~fD  226 (480)
T 3b3j_A          150 ILQNHTD-FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV-SLPEQVD  226 (480)
T ss_dssp             HHHTGGG-TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSCEE
T ss_pred             HHHhhhh-cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhC-ccCCCeE
Confidence            4444432 578999999 99999999999864 5899999998 988886  556677 5799999998763 2235899


Q ss_pred             EEEEcCCCCC-----chH---HHHhccccCcEEEE
Q psy8015          92 AIHVGAAYPR-----YPE---IFIHHLKSGGRLVI  118 (165)
Q Consensus        92 ~I~i~~~~~~-----~p~---~l~~~LkpgG~lvi  118 (165)
                      +|+++.....     +.+   .+.+.|||||++++
T Consensus       227 ~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          227 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             EEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             EEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            9998654221     122   34689999999985

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.22  E-value=2.3e-11  Score=99.00  Aligned_cols=103  Identities=11%  Similarity=-0.006  Sum_probs=80.2

Q ss_pred             HHHHHHhcCCC-CCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCC-CC
Q psy8015          16 KYVTYLSGHSK-RLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFG-DN   87 (165)
Q Consensus        16 ~~l~~l~~~~~-~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~-~~   87 (165)
                      .+++.+.. .+ +.+|||| ||+|.++..+++..  .+++++|+ +++++.|+  .+..+.. +++++.+|..+..+ ..
T Consensus       169 ~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  246 (352)
T 3mcz_A          169 DVVSELGV-FARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEG  246 (352)
T ss_dssp             HHHHTCGG-GTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTT
T ss_pred             HHHHhCCC-cCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCC
Confidence            34444432 45 8899999 99999999999875  48999999 88999986  4555654 59999999876431 23


Q ss_pred             CCccEEEEcCCCCCchH--------HHHhccccCcEEEEEe
Q psy8015          88 GPYDAIHVGAAYPRYPE--------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        88 ~~fD~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~  120 (165)
                      +.||+|++....++.++        .+.+.|||||++++..
T Consensus       247 ~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (352)
T 3mcz_A          247 GAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILT  287 (352)
T ss_dssp             CCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            56999999988886654        4679999999999865

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.22  E-value=7e-11  Score=88.64  Aligned_cols=105  Identities=9%  Similarity=0.005  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHh--cCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCC
Q psy8015          12 GAVAKYVTYLS--GHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDN   87 (165)
Q Consensus        12 ~~~~~~l~~l~--~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~   87 (165)
                      ....+++..+.  ...++.+|||+ ||+|.++..+++.. .+|+++|+++++++.|+.+.   .+++++++|+.+ ++  
T Consensus        35 ~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~---~~~~~~~~d~~~-~~--  108 (200)
T 1ne2_A           35 STAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC---GGVNFMVADVSE-IS--  108 (200)
T ss_dssp             HHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC---TTSEEEECCGGG-CC--
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhc---CCCEEEECcHHH-CC--
Confidence            34445555443  23478999999 99999999999874 47999999999999997322   189999999876 33  


Q ss_pred             CCccEEEEcCCCCCchH-----HHHhccccCcEEEEEecC
Q psy8015          88 GPYDAIHVGAAYPRYPE-----IFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        88 ~~fD~I~i~~~~~~~p~-----~l~~~LkpgG~lvi~~~~  122 (165)
                      ++||+|+++...+...+     .+.+.++..|.+++.+..
T Consensus       109 ~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~  148 (200)
T 1ne2_A          109 GKYDTWIMNPPFGSVVKHSDRAFIDKAFETSMWIYSIGNA  148 (200)
T ss_dssp             CCEEEEEECCCC-------CHHHHHHHHHHEEEEEEEEEG
T ss_pred             CCeeEEEECCCchhccCchhHHHHHHHHHhcCcEEEEEcC
Confidence            68999999987654432     222333333666666644

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.21  E-value=5.7e-12  Score=104.72  Aligned_cols=96  Identities=6%  Similarity=-0.076  Sum_probs=76.3

Q ss_pred             CCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccC---------------CCCCeEEEEccCCCCCC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTI---------------DPDHDYDLIADGRASFG   85 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~---------------~~~nV~~~~gD~~~~~~   85 (165)
                      ++.+|||+ ||||..+..++...  .+|+++|+++++++.|+  ++..               +++|++++++|+...+.
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            68999999 99999999999874  47999999999999996  5444               67679999999865322


Q ss_pred             C-CCCccEEEEcCCCC--CchHHHHhccccCcEEEEEec
Q psy8015          86 D-NGPYDAIHVGAAYP--RYPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        86 ~-~~~fD~I~i~~~~~--~~p~~l~~~LkpgG~lvi~~~  121 (165)
                      . ..+||+|+++....  .+.+...+.|||||++++.+.
T Consensus       127 ~~~~~fD~I~lDP~~~~~~~l~~a~~~lk~gG~l~vt~t  165 (378)
T 2dul_A          127 ERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTAT  165 (378)
T ss_dssp             HSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hccCCCCEEEeCCCCCHHHHHHHHHHhcCCCCEEEEEee
Confidence            1 25799999886332  344667789999999888763

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.21  E-value=5.7e-12  Score=105.22  Aligned_cols=97  Identities=6%  Similarity=-0.043  Sum_probs=77.8

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCC--eEEEEccCCCCCC-C-CCCccEEE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDH--DYDLIADGRASFG-D-NGPYDAIH   94 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~n--V~~~~gD~~~~~~-~-~~~fD~I~   94 (165)
                      +++.+|||+ ||+|.++..++...   ++|+++|+++++++.++  ++..+++|  ++++.+|+.+.+. . .++||+|+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~  130 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD  130 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence            468999999 99999999999853   58999999999999996  66678876  9999999865332 2 35799999


Q ss_pred             EcCCCC--CchHHHHhccccCcEEEEEec
Q psy8015          95 VGAAYP--RYPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        95 i~~~~~--~~p~~l~~~LkpgG~lvi~~~  121 (165)
                      ++.-..  .+.+...+.|+|||+|++.+.
T Consensus       131 lDP~g~~~~~l~~a~~~Lk~gGll~~t~t  159 (392)
T 3axs_A          131 LDPFGTPVPFIESVALSMKRGGILSLTAT  159 (392)
T ss_dssp             ECCSSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ECCCcCHHHHHHHHHHHhCCCCEEEEEec
Confidence            997211  244566788999999999874

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.19  E-value=6.9e-11  Score=94.13  Aligned_cols=98  Identities=8%  Similarity=-0.082  Sum_probs=73.8

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC-CCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS-FGDNG   88 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~-~~~~~   88 (165)
                      +....++++.+. ..++ +|||| ||+|.+|..|++.+.+|+++|+|++|++.++.+.. ..|++++++|+.+. +++..
T Consensus        33 ~~i~~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~-~~~v~vi~~D~l~~~~~~~~  109 (271)
T 3fut_A           33 EAHLRRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS-GLPVRLVFQDALLYPWEEVP  109 (271)
T ss_dssp             HHHHHHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT-TSSEEEEESCGGGSCGGGSC
T ss_pred             HHHHHHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC-CCCEEEEECChhhCChhhcc
Confidence            456778888885 4788 99999 99999999999999999999999999999963221 25899999999763 22223


Q ss_pred             CccEEEEcCCCCCchHHHHhccc
Q psy8015          89 PYDAIHVGAAYPRYPEIFIHHLK  111 (165)
Q Consensus        89 ~fD~I~i~~~~~~~p~~l~~~Lk  111 (165)
                      .||.|+.+-.+..-.+-++++|.
T Consensus       110 ~~~~iv~NlPy~iss~il~~ll~  132 (271)
T 3fut_A          110 QGSLLVANLPYHIATPLVTRLLK  132 (271)
T ss_dssp             TTEEEEEEECSSCCHHHHHHHHH
T ss_pred             CccEEEecCcccccHHHHHHHhc
Confidence            68988877655433333444443

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.17  E-value=1.4e-10  Score=95.43  Aligned_cols=97  Identities=12%  Similarity=0.108  Sum_probs=76.6

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDA   92 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~   92 (165)
                      .+++.+....++.+|||| ||+|..+..+++...  +++++|+ +.+++.|+.    .++++++.+|..+.++   .||+
T Consensus       199 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~~~~---~~D~  270 (372)
T 1fp1_D          199 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP----LSGIEHVGGDMFASVP---QGDA  270 (372)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----CTTEEEEECCTTTCCC---CEEE
T ss_pred             HHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh----cCCCEEEeCCcccCCC---CCCE
Confidence            344444223567899999 999999999998764  6788899 999998863    2579999999876433   2999


Q ss_pred             EEEcCCCCCchH--------HHHhccccCcEEEEEe
Q psy8015          93 IHVGAAYPRYPE--------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        93 I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~  120 (165)
                      |++....++.++        ++.+.|||||++++..
T Consensus       271 v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e  306 (372)
T 1fp1_D          271 MILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE  306 (372)
T ss_dssp             EEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999998886653        4689999999999863

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.17  E-value=1e-10  Score=98.66  Aligned_cols=106  Identities=9%  Similarity=0.024  Sum_probs=80.0

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---------------CcEEEEeCCHHHHHhcc--cccCCCC--Ce
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---------------PNSFNINVYYYLSGGPL--SSTIDPD--HD   73 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---------------~~V~aiD~~~~~~~~A~--~~~~~~~--nV   73 (165)
                      +..|++.+. ..++.+|||. ||||.+...+++..               .+++++|+++.+++.|+  +...|..  ++
T Consensus       160 ~~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~  238 (445)
T 2okc_A          160 IQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS  238 (445)
T ss_dssp             HHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred             HHHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCC
Confidence            445555553 4678999999 99999998887642               57999999999999996  4445664  78


Q ss_pred             EEEEccCCCCCCCCCCccEEEEcCCCCC-----------------------chHHHHhccccCcEEEEEec
Q psy8015          74 YDLIADGRASFGDNGPYDAIHVGAAYPR-----------------------YPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        74 ~~~~gD~~~~~~~~~~fD~I~i~~~~~~-----------------------~p~~l~~~LkpgG~lvi~~~  121 (165)
                      .++++|...... ..+||+|+.+.....                       ....+.+.|||||+++++++
T Consensus       239 ~i~~gD~l~~~~-~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p  308 (445)
T 2okc_A          239 PIVCEDSLEKEP-STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  308 (445)
T ss_dssp             SEEECCTTTSCC-SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CEeeCCCCCCcc-cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence            899999876433 348999999855431                       12456799999999988774

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.15  E-value=1.8e-12  Score=101.11  Aligned_cols=110  Identities=12%  Similarity=0.022  Sum_probs=82.3

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC-CCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF-GDNG   88 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~-~~~~   88 (165)
                      +....++++.+. ..++++|||+ ||+|.++..+++...+|+++|+|+++++.|+.+..+.+|++++++|+.+.. +..+
T Consensus        15 ~~~~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~   93 (245)
T 1yub_A           15 EKVLNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ   93 (245)
T ss_dssp             TTTHHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSS
T ss_pred             HHHHHHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCC
Confidence            445667777774 4788999999 999999999999889999999999999999632224468999999987632 2235


Q ss_pred             CccEEEEcCCCC-----------------Cch----HHHHhccccCcEEEEEecC
Q psy8015          89 PYDAIHVGAAYP-----------------RYP----EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        89 ~fD~I~i~~~~~-----------------~~p----~~l~~~LkpgG~lvi~~~~  122 (165)
                      +| .|+.+....                 ...    +.+.+.|+|||++++....
T Consensus        94 ~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~~  147 (245)
T 1yub_A           94 RY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLHT  147 (245)
T ss_dssp             EE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTTT
T ss_pred             Cc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhee
Confidence            78 566653221                 111    4578999999998886654

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.15  E-value=2.3e-10  Score=94.24  Aligned_cols=89  Identities=11%  Similarity=0.056  Sum_probs=73.2

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR  101 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~  101 (165)
                      .+..+|||| ||+|..+..+++..  .+++++|+ +++++.|+.    .++++++.+|..+.+++ +  |+|++....++
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~~~p~-~--D~v~~~~vlh~  273 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA----FSGVEHLGGDMFDGVPK-G--DAIFIKWICHD  273 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----CTTEEEEECCTTTCCCC-C--SEEEEESCGGG
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh----cCCCEEEecCCCCCCCC-C--CEEEEechhhc
Confidence            467899999 99999999999875  37899999 999988863    25899999998875553 3  99999998886


Q ss_pred             chH--------HHHhccccCcEEEEEec
Q psy8015         102 YPE--------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       102 ~p~--------~l~~~LkpgG~lvi~~~  121 (165)
                      .++        ++.+.|||||++++...
T Consensus       274 ~~~~~~~~~l~~~~~~L~pgG~l~i~e~  301 (368)
T 3reo_A          274 WSDEHCLKLLKNCYAALPDHGKVIVAEY  301 (368)
T ss_dssp             BCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            653        46789999999998653

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.15  E-value=3.3e-11  Score=100.78  Aligned_cols=97  Identities=12%  Similarity=0.104  Sum_probs=70.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-cc------ccHHHHHHhcc---CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TS------NTKQSTTLPTF---IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA   82 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~G------sG~~t~~la~~---~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~   82 (165)
                      ...+++..+.  .++.+|||| ||      +|..+..+++.   ..+|+++|++++|..       ..+|++++++|+.+
T Consensus       205 ~Ye~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~-------~~~rI~fv~GDa~d  275 (419)
T 3sso_A          205 HYDRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV-------DELRIRTIQGDQND  275 (419)
T ss_dssp             HHHHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG-------CBTTEEEEECCTTC
T ss_pred             HHHHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh-------cCCCcEEEEecccc
Confidence            4445555443  467999999 99      67677666653   368999999999831       23689999999875


Q ss_pred             CCCC------CCCccEEEEcCCCCCch------HHHHhccccCcEEEEE
Q psy8015          83 SFGD------NGPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        83 ~~~~------~~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~  119 (165)
                      ....      .++||+|++++. +..+      +++++.|||||++++.
T Consensus       276 lpf~~~l~~~d~sFDlVisdgs-H~~~d~~~aL~el~rvLKPGGvlVi~  323 (419)
T 3sso_A          276 AEFLDRIARRYGPFDIVIDDGS-HINAHVRTSFAALFPHVRPGGLYVIE  323 (419)
T ss_dssp             HHHHHHHHHHHCCEEEEEECSC-CCHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cchhhhhhcccCCccEEEECCc-ccchhHHHHHHHHHHhcCCCeEEEEE
Confidence            2111      378999998765 4333      3678999999999985

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.14  E-value=8e-11  Score=98.24  Aligned_cols=111  Identities=6%  Similarity=-0.144  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC----------------------------------------cE
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP----------------------------------------NS   50 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~----------------------------------------~V   50 (165)
                      ...+.|+.+. ...++..|||. ||||.++..+|....                                        +|
T Consensus       188 ~lAa~ll~l~-~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V  266 (393)
T 3k0b_A          188 TMAAALVLLT-SWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI  266 (393)
T ss_dssp             HHHHHHHHHS-CCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred             HHHHHHHHHh-CCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence            3445666555 45788999999 999999988886542                                        49


Q ss_pred             EEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCCCCCCccEEEEcCCCCC-ch---------HHHHhcccc--CcE
Q psy8015          51 FNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFGDNGPYDAIHVGAAYPR-YP---------EIFIHHLKS--GGR  115 (165)
Q Consensus        51 ~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~~~~~fD~I~i~~~~~~-~p---------~~l~~~Lkp--gG~  115 (165)
                      +++|+|++|++.|+  ++..|+.+ ++++++|+.+... ..+||+|+++..+.. +.         ..+.+.||+  ||+
T Consensus       267 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~-~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~  345 (393)
T 3k0b_A          267 IGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT-EDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWS  345 (393)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC-CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCE
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC-CCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCE
Confidence            99999999999996  66678764 9999999977443 358999999876532 21         123445555  999


Q ss_pred             EEEEecCCC
Q psy8015         116 LVIPIGDTK  124 (165)
Q Consensus       116 lvi~~~~~~  124 (165)
                      +++...+..
T Consensus       346 ~~iit~~~~  354 (393)
T 3k0b_A          346 VYVLTSYEL  354 (393)
T ss_dssp             EEEEECCTT
T ss_pred             EEEEECCHH
Confidence            999887654

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.14  E-value=3.9e-10  Score=92.81  Aligned_cols=97  Identities=10%  Similarity=0.059  Sum_probs=77.1

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDA   92 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~   92 (165)
                      .+++.+....+..+|||| ||+|..+..+++..  .+++++|+ +++++.|+.    .++++++.+|..+.++. +  |+
T Consensus       191 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~~~p~-~--D~  262 (364)
T 3p9c_A          191 KLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ----FPGVTHVGGDMFKEVPS-G--DT  262 (364)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----CTTEEEEECCTTTCCCC-C--SE
T ss_pred             HHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh----cCCeEEEeCCcCCCCCC-C--CE
Confidence            455554324578999999 99999999999865  37999999 999988863    25899999998775553 3  99


Q ss_pred             EEEcCCCCCchH--------HHHhccccCcEEEEEe
Q psy8015          93 IHVGAAYPRYPE--------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        93 I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~  120 (165)
                      |++....++.++        ++.+.|||||++++..
T Consensus       263 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e  298 (364)
T 3p9c_A          263 ILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQ  298 (364)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            999998886643        4678999999999964

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.13  E-value=5.4e-10  Score=89.16  Aligned_cols=109  Identities=15%  Similarity=0.085  Sum_probs=76.3

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccc---cHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC--
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSN---TKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS--   83 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~Gs---G~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~--   83 (165)
                      ..+.+.+|.....-.+|||| ||+   |.....+.+..  .+|+++|.|+.|++.||  +...+..+++++++|..+.  
T Consensus        66 l~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~  145 (277)
T 3giw_A           66 MNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPAS  145 (277)
T ss_dssp             HHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHH
T ss_pred             HHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhh
Confidence            45667777532345799999 997   34444333333  58999999999999997  4333345799999998653  


Q ss_pred             -CCC---CCCcc-----EEEEcCCCCCchH---------HHHhccccCcEEEEEecC
Q psy8015          84 -FGD---NGPYD-----AIHVGAAYPRYPE---------IFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        84 -~~~---~~~fD-----~I~i~~~~~~~p~---------~l~~~LkpgG~lvi~~~~  122 (165)
                       +..   .+.||     +|++++.++++++         .+.+.|+|||+|++....
T Consensus       146 ~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~  202 (277)
T 3giw_A          146 ILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGT  202 (277)
T ss_dssp             HHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred             hhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEecc
Confidence             110   13344     6888888887764         357789999999998654

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.11  E-value=3.9e-10  Score=93.56  Aligned_cols=102  Identities=16%  Similarity=0.081  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc---CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCC
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF---IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDN   87 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~   87 (165)
                      ..+..|++++.. .++.+|||+ ||+|.++..+++.   ..+|+++|+++.+++.|       .+++++++|.... ...
T Consensus        26 ~l~~~~~~~~~~-~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-------~~~~~~~~D~~~~-~~~   96 (421)
T 2ih2_A           26 EVVDFMVSLAEA-PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------PWAEGILADFLLW-EPG   96 (421)
T ss_dssp             HHHHHHHHHCCC-CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------TTEEEEESCGGGC-CCS
T ss_pred             HHHHHHHHhhcc-CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-------CCCcEEeCChhhc-Ccc
Confidence            345556666642 467899999 9999999999874   36899999999999877       4789999998763 334


Q ss_pred             CCccEEEEcCCCC---C-------c-------------------------hHHHHhccccCcEEEEEecC
Q psy8015          88 GPYDAIHVGAAYP---R-------Y-------------------------PEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        88 ~~fD~I~i~~~~~---~-------~-------------------------p~~l~~~LkpgG~lvi~~~~  122 (165)
                      ++||+|+++....   .       +                         .+.+.+.|+|||++++.+..
T Consensus        97 ~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~  166 (421)
T 2ih2_A           97 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA  166 (421)
T ss_dssp             SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             CCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence            6899999974331   1       1                         22457899999999998754

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.10  E-value=6.7e-10  Score=87.22  Aligned_cols=70  Identities=10%  Similarity=0.042  Sum_probs=60.0

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS   83 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~   83 (165)
                      +....++++.+. ..++++|||| ||+|.+|..+++. ..+|+++|+|++|++.++.+  +..|++++++|+.+.
T Consensus        17 ~~i~~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~--~~~~v~~i~~D~~~~   88 (249)
T 3ftd_A           17 EGVLKKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI--GDERLEVINEDASKF   88 (249)
T ss_dssp             HHHHHHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS--CCTTEEEECSCTTTC
T ss_pred             HHHHHHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc--cCCCeEEEEcchhhC
Confidence            456778888875 4789999999 9999999999998 48999999999999999744  456899999999763

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.10  E-value=3.4e-11  Score=100.98  Aligned_cols=85  Identities=12%  Similarity=-0.032  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccC--CCCCeEEEEccCCCCCCC
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTI--DPDHDYDLIADGRASFGD   86 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~--~~~nV~~~~gD~~~~~~~   86 (165)
                      ..++++...+.  .++.+|||+ ||+|+.+..||+...+|+++|+|++|++.|+  ++.+  |++|++++++|+.+.++.
T Consensus        81 e~vA~~~a~~l--~~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~  158 (410)
T 3ll7_A           81 AVTSSYKSRFI--REGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL  158 (410)
T ss_dssp             HHHHHHGGGGS--CTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH
T ss_pred             HHHHHHHHHhc--CCCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh
Confidence            34555544332  358999999 9999999999999899999999999999996  5555  778899999999764332


Q ss_pred             --CCCccEEEEcCC
Q psy8015          87 --NGPYDAIHVGAA   98 (165)
Q Consensus        87 --~~~fD~I~i~~~   98 (165)
                        ..+||+||++..
T Consensus       159 ~~~~~fDvV~lDPP  172 (410)
T 3ll7_A          159 IKTFHPDYIYVDPA  172 (410)
T ss_dssp             HHHHCCSEEEECCE
T ss_pred             ccCCCceEEEECCC
Confidence              258999999843

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.08  E-value=6e-10  Score=86.95  Aligned_cols=84  Identities=14%  Similarity=0.035  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC-CCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF-GDNG   88 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~-~~~~   88 (165)
                      +....++++.+. ..++++|||| ||+|.+|..+++.+.+|+++|+|++|++.|+.+....+|++++++|+.+.. ++..
T Consensus        16 ~~~~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~   94 (244)
T 1qam_A           16 KHNIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ   94 (244)
T ss_dssp             HHHHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred             HHHHHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCC
Confidence            455666776663 4688999999 999999999999889999999999999999732223468999999987632 2223


Q ss_pred             CccEEEEc
Q psy8015          89 PYDAIHVG   96 (165)
Q Consensus        89 ~fD~I~i~   96 (165)
                      +| .|+.+
T Consensus        95 ~~-~vv~n  101 (244)
T 1qam_A           95 SY-KIFGN  101 (244)
T ss_dssp             CC-EEEEE
T ss_pred             Ce-EEEEe
Confidence            45 45554

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.08  E-value=5.3e-10  Score=91.17  Aligned_cols=88  Identities=7%  Similarity=-0.027  Sum_probs=73.2

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR  101 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~  101 (165)
                      .++.+|||| ||+|..+..+++..  .+++++|+ +++++.|+.    .++++++.+|..+.++   .||+|++....++
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~~~p---~~D~v~~~~~lh~  258 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG----SNNLTYVGGDMFTSIP---NADAVLLKYILHN  258 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----BTTEEEEECCTTTCCC---CCSEEEEESCGGG
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc----CCCcEEEeccccCCCC---CccEEEeehhhcc
Confidence            467899999 99999999999775  47999999 999998863    2469999999876443   3999999998886


Q ss_pred             chH--------HHHhcccc---CcEEEEEe
Q psy8015         102 YPE--------IFIHHLKS---GGRLVIPI  120 (165)
Q Consensus       102 ~p~--------~l~~~Lkp---gG~lvi~~  120 (165)
                      .++        ++.+.|||   ||++++..
T Consensus       259 ~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e  288 (352)
T 1fp2_A          259 WTDKDCLRILKKCKEAVTNDGKRGKVTIID  288 (352)
T ss_dssp             SCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            653        46889999   99999864

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.08  E-value=1.1e-09  Score=91.18  Aligned_cols=111  Identities=6%  Similarity=-0.126  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC----------------------------------------cE
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP----------------------------------------NS   50 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~----------------------------------------~V   50 (165)
                      ...+.|+.+. ...++..++|. ||||.+...+|....                                        +|
T Consensus       181 ~LAaall~l~-~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v  259 (384)
T 3ldg_A          181 NMAAAIILLS-NWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI  259 (384)
T ss_dssp             HHHHHHHHHT-TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred             HHHHHHHHHh-CCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence            3445566555 45788999999 999999988886542                                        49


Q ss_pred             EEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCCCCCCccEEEEcCCCC-Cch---------HHHHhcccc--CcE
Q psy8015          51 FNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFGDNGPYDAIHVGAAYP-RYP---------EIFIHHLKS--GGR  115 (165)
Q Consensus        51 ~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~~~~~fD~I~i~~~~~-~~p---------~~l~~~Lkp--gG~  115 (165)
                      +++|+|++|++.|+  ++..|+.+ ++++++|+.+... ..+||+|+++..+. .+.         ..+.+.||+  ||+
T Consensus       260 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~-~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~  338 (384)
T 3ldg_A          260 SGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT-NKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWS  338 (384)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC-CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSE
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc-cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcE
Confidence            99999999999996  66778765 9999999976433 35899999987653 221         123445555  999


Q ss_pred             EEEEecCCC
Q psy8015         116 LVIPIGDTK  124 (165)
Q Consensus       116 lvi~~~~~~  124 (165)
                      +++...+..
T Consensus       339 ~~iit~~~~  347 (384)
T 3ldg_A          339 QFILTNDTD  347 (384)
T ss_dssp             EEEEESCTT
T ss_pred             EEEEECCHH
Confidence            999987654

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.07  E-value=5.2e-10  Score=93.04  Aligned_cols=110  Identities=5%  Similarity=-0.124  Sum_probs=82.5

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC----------------------------------------CcEE
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI----------------------------------------PNSF   51 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~----------------------------------------~~V~   51 (165)
                      ..+.|+.+. ...++.+|||. ||||.++..+|...                                        .+|+
T Consensus       183 lAa~ll~~~-~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~  261 (385)
T 3ldu_A          183 LAAGLIYLT-PWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY  261 (385)
T ss_dssp             HHHHHHHTS-CCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred             HHHHHHHhh-CCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence            445555554 44788999999 99999998887653                                        3699


Q ss_pred             EEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCCccEEEEcCCCCC-ch---------HHHHhcccc--CcEE
Q psy8015          52 NINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGPYDAIHVGAAYPR-YP---------EIFIHHLKS--GGRL  116 (165)
Q Consensus        52 aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~-~p---------~~l~~~Lkp--gG~l  116 (165)
                      ++|+|+++++.|+  ++..|+. ++++.++|+.+... ..+||+|+++..+.. +.         ..+.+.||+  |+++
T Consensus       262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~-~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~  340 (385)
T 3ldu_A          262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS-EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSY  340 (385)
T ss_dssp             EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC-SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEE
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc-CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEE
Confidence            9999999999996  5566775 69999999876433 458999999877642 21         123445555  9999


Q ss_pred             EEEecCCC
Q psy8015         117 VIPIGDTK  124 (165)
Q Consensus       117 vi~~~~~~  124 (165)
                      ++...+..
T Consensus       341 ~iit~~~~  348 (385)
T 3ldu_A          341 YLITSYED  348 (385)
T ss_dssp             EEEESCTT
T ss_pred             EEEECCHH
Confidence            99887653

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.05  E-value=3.7e-10  Score=90.72  Aligned_cols=93  Identities=15%  Similarity=0.258  Sum_probs=66.4

Q ss_pred             HHHHHHHh----cCCCCCeEEEE-ccc------cHHHHHHhccC---CcEEEEeCCHHHHHhcccccCCCCCeEE-EEcc
Q psy8015          15 AKYVTYLS----GHSKRLDCLAL-TSN------TKQSTTLPTFI---PNSFNINVYYYLSGGPLSSTIDPDHDYD-LIAD   79 (165)
Q Consensus        15 ~~~l~~l~----~~~~~~~vLei-~Gs------G~~t~~la~~~---~~V~aiD~~~~~~~~A~~~~~~~~nV~~-~~gD   79 (165)
                      .++.+++.    ...++++|||+ ||+      |.  ..+++..   ++|+++|+++.           ++|+++ +++|
T Consensus        48 ~~l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-----------v~~v~~~i~gD  114 (290)
T 2xyq_A           48 TQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-----------VSDADSTLIGD  114 (290)
T ss_dssp             HHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-----------BCSSSEEEESC
T ss_pred             HHHHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-----------CCCCEEEEECc
Confidence            34555552    34789999999 955      65  4455543   68999999997           147889 9999


Q ss_pred             CCCCCCCCCCccEEEEcCCCCC-----------------chHHHHhccccCcEEEEEec
Q psy8015          80 GRASFGDNGPYDAIHVGAAYPR-----------------YPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        80 ~~~~~~~~~~fD~I~i~~~~~~-----------------~p~~l~~~LkpgG~lvi~~~  121 (165)
                      +.+.. ..++||+|+++...+.                 +.+.+.+.|||||++++.+.
T Consensus       115 ~~~~~-~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~  172 (290)
T 2xyq_A          115 CATVH-TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT  172 (290)
T ss_dssp             GGGCC-CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cccCC-ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            87632 2368999999754321                 22456899999999999663

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.05  E-value=2.6e-11  Score=95.82  Aligned_cols=84  Identities=12%  Similarity=0.052  Sum_probs=64.1

Q ss_pred             HHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCH-------HHHHhcc--cccCCCCC-eEEEEccCCCCCC
Q psy8015          17 YVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYY-------YLSGGPL--SSTIDPDH-DYDLIADGRASFG   85 (165)
Q Consensus        17 ~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~-------~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~   85 (165)
                      ++.......++.+|||+ ||+|..|..+|+...+|+++|+++       ++++.|+  .+..++.| ++++++|+.+.++
T Consensus        74 ~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~  153 (258)
T 2r6z_A           74 LIAKAVNHTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMP  153 (258)
T ss_dssp             HHHHHTTGGGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHH
T ss_pred             HHHHHhCcCCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHH
Confidence            33333333567999999 999999999999888999999999       8888885  33345545 9999999865332


Q ss_pred             C--C--CCccEEEEcCCCC
Q psy8015          86 D--N--GPYDAIHVGAAYP  100 (165)
Q Consensus        86 ~--~--~~fD~I~i~~~~~  100 (165)
                      .  .  ++||+|+++...+
T Consensus       154 ~~~~~~~~fD~V~~dP~~~  172 (258)
T 2r6z_A          154 ALVKTQGKPDIVYLDPMYP  172 (258)
T ss_dssp             HHHHHHCCCSEEEECCCC-
T ss_pred             hhhccCCCccEEEECCCCC
Confidence            1  1  5899999987654

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.02  E-value=7.8e-11  Score=86.66  Aligned_cols=81  Identities=12%  Similarity=0.054  Sum_probs=64.0

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC---CCCCccEEEEcCCC
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG---DNGPYDAIHVGAAY   99 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~---~~~~fD~I~i~~~~   99 (165)
                      .++|++|||+ ||+              +++|++++|++.|+.+. . .+++++++|+.+...   +.++||+|++....
T Consensus        10 ~~~g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~-~-~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l   73 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS--------------SPVEALKGLVDKLQALT-G-NEGRVSVENIKQLLQSAHKESSFDIILSGLVP   73 (176)
T ss_dssp             CCTTSEEEEEECTT--------------SCHHHHHHHHHHHHHHT-T-TTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred             CCCCCEEEEecCCc--------------eeeeCCHHHHHHHHHhc-c-cCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence            4789999999 886              23999999999997332 1 259999999876433   45789999998888


Q ss_pred             CCc-h------HHHHhccccCcEEEEEe
Q psy8015         100 PRY-P------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus       100 ~~~-p------~~l~~~LkpgG~lvi~~  120 (165)
                      +++ +      .++.+.|||||++++..
T Consensus        74 ~~~~~~~~~~l~~~~r~LkpgG~l~~~~  101 (176)
T 2ld4_A           74 GSTTLHSAEILAEIARILRPGGCLFLKE  101 (176)
T ss_dssp             TCCCCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcccCHHHHHHHHHHHCCCCEEEEEEc
Confidence            776 3      36789999999999953

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.01  E-value=4.3e-10  Score=90.79  Aligned_cols=90  Identities=11%  Similarity=-0.007  Sum_probs=72.3

Q ss_pred             CchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC
Q psy8015           9 SVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS   83 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~   83 (165)
                      -+|-....++++|. ..++.+|||+ ||+|..|..+++..  ++|+++|+|++|++.|+  ++..+ +|++++++|..+.
T Consensus        10 h~pvLl~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l   87 (301)
T 1m6y_A           10 HIPVMVREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREA   87 (301)
T ss_dssp             CCCTTHHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGH
T ss_pred             ccHHHHHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHH
Confidence            35667788889885 4789999999 99999999999874  79999999999999996  55556 6899999997542


Q ss_pred             C---CC--CCCccEEEEcCCCC
Q psy8015          84 F---GD--NGPYDAIHVGAAYP  100 (165)
Q Consensus        84 ~---~~--~~~fD~I~i~~~~~  100 (165)
                      .   ..  ..+||.|+++..+.
T Consensus        88 ~~~l~~~g~~~~D~Vl~D~gvS  109 (301)
T 1m6y_A           88 DFLLKTLGIEKVDGILMDLGVS  109 (301)
T ss_dssp             HHHHHHTTCSCEEEEEEECSCC
T ss_pred             HHHHHhcCCCCCCEEEEcCccc
Confidence            1   11  15799999987654

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.01  E-value=2.9e-09  Score=87.20  Aligned_cols=93  Identities=11%  Similarity=-0.056  Sum_probs=74.1

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      .+..+|+|| ||+|.++..+++...  +++..|. |++++.|+  .+..+.++|+++.+|..+...  ..+|++++...+
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~--~~~D~~~~~~vl  254 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL--PEADLYILARVL  254 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCC--CCCSEEEEESSG
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCC--CCceEEEeeeec
Confidence            567899999 999999999998875  5666776 88999986  444456789999999876432  358999999988


Q ss_pred             CCchH--------HHHhccccCcEEEEEe
Q psy8015         100 PRYPE--------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus       100 ~~~p~--------~l~~~LkpgG~lvi~~  120 (165)
                      ++.++        .+.+.|+|||++++..
T Consensus       255 h~~~d~~~~~iL~~~~~al~pgg~lli~e  283 (353)
T 4a6d_A          255 HDWADGKCSHLLERIYHTCKPGGGILVIE  283 (353)
T ss_dssp             GGSCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             ccCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence            87664        4678999999999865

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.99  E-value=5.8e-10  Score=87.81  Aligned_cols=69  Identities=7%  Similarity=-0.118  Sum_probs=57.2

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCc--EEEEeCCHHHHHhcccccCCCCCeEEEEccCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPN--SFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA   82 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~--V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~   82 (165)
                      +...+++++.+. ..++++|||| ||+|++|. +++ +++  |+++|+|++|++.++.+..+.+|++++++|+.+
T Consensus         7 ~~i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~   78 (252)
T 1qyr_A            7 QFVIDSIVSAIN-PQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMT   78 (252)
T ss_dssp             HHHHHHHHHHHC-CCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGG
T ss_pred             HHHHHHHHHhcC-CCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhh
Confidence            567788898885 4789999999 99999999 765 577  999999999999997322223589999999876

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.98  E-value=7.5e-10  Score=95.81  Aligned_cols=107  Identities=9%  Similarity=0.060  Sum_probs=79.4

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--------------------CcEEEEeCCHHHHHhcc--cccCCC
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--------------------PNSFNINVYYYLSGGPL--SSTIDP   70 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--------------------~~V~aiD~~~~~~~~A~--~~~~~~   70 (165)
                      +..|++++. ..++.+|||. ||||.+...+++..                    .+++++|+++.+++.|+  +...|.
T Consensus       158 v~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi  236 (541)
T 2ar0_A          158 IKTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI  236 (541)
T ss_dssp             HHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCC
Confidence            344556654 4678999999 99999987776542                    37999999999999996  444566


Q ss_pred             CC-----eEEEEccCCCCC-CCCCCccEEEEcCCCCC--------------------chHHHHhccccCcEEEEEec
Q psy8015          71 DH-----DYDLIADGRASF-GDNGPYDAIHVGAAYPR--------------------YPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        71 ~n-----V~~~~gD~~~~~-~~~~~fD~I~i~~~~~~--------------------~p~~l~~~LkpgG~lvi~~~  121 (165)
                      .+     +.++++|..... ....+||+|+.+..+..                    ....+.+.|+|||+++++++
T Consensus       237 ~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p  313 (541)
T 2ar0_A          237 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP  313 (541)
T ss_dssp             CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence            65     889999986532 22468999999865431                    12356789999999998875

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.95  E-value=7.9e-10  Score=88.31  Aligned_cols=69  Identities=7%  Similarity=-0.020  Sum_probs=59.4

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCc----EEEEeCCHHHHHhcccccCCCCCeEEEEccCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPN----SFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA   82 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~----V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~   82 (165)
                      +....++++.+. ..++++|||| ||+|.+|..|++.+.+    |+++|+|++|++.++.+.  ..|++++++|+.+
T Consensus        28 ~~i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~~~v~~i~~D~~~  101 (279)
T 3uzu_A           28 HGVIDAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--GELLELHAGDALT  101 (279)
T ss_dssp             HHHHHHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--GGGEEEEESCGGG
T ss_pred             HHHHHHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--CCCcEEEECChhc
Confidence            456778888885 4789999999 9999999999998777    999999999999997432  4689999999876

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.94  E-value=3.8e-09  Score=86.25  Aligned_cols=88  Identities=9%  Similarity=0.028  Sum_probs=72.3

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR  101 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~  101 (165)
                      .+..+|||| ||+|.++..+++...  +++++|+ +.+++.|+.    .++++++.+|..+..+   .||+|++....++
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~~~~---~~D~v~~~~vlh~  263 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG----NENLNFVGGDMFKSIP---SADAVLLKWVLHD  263 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC----CSSEEEEECCTTTCCC---CCSEEEEESCGGG
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc----CCCcEEEeCccCCCCC---CceEEEEcccccC
Confidence            467899999 999999999998763  7999999 899987762    3579999999876333   4999999988886


Q ss_pred             chH--------HHHhcccc---CcEEEEEe
Q psy8015         102 YPE--------IFIHHLKS---GGRLVIPI  120 (165)
Q Consensus       102 ~p~--------~l~~~Lkp---gG~lvi~~  120 (165)
                      .++        ++.+.|+|   ||++++..
T Consensus       264 ~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e  293 (358)
T 1zg3_A          264 WNDEQSLKILKNSKEAISHKGKDGKVIIID  293 (358)
T ss_dssp             SCHHHHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            653        46789999   99999854

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.91  E-value=1.9e-09  Score=86.33  Aligned_cols=103  Identities=7%  Similarity=-0.020  Sum_probs=75.5

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc-------CCcEEEEeCCHH--------------------------HHH
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF-------IPNSFNINVYYY--------------------------LSG   61 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~-------~~~V~aiD~~~~--------------------------~~~   61 (165)
                      .+++.+......++|||+ |..|+.+.++|..       .++|+++|..+.                          .++
T Consensus        96 ~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~  175 (282)
T 2wk1_A           96 QCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEE  175 (282)
T ss_dssp             HHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHH
T ss_pred             HHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHH
Confidence            444444332456799999 9999999998865       368999996532                          244


Q ss_pred             hcc--cccCCC--CCeEEEEccCCCCCCC--CCCccEEEEcCCCC-C---chHHHHhccccCcEEEE
Q psy8015          62 GPL--SSTIDP--DHDYDLIADGRASFGD--NGPYDAIHVGAAYP-R---YPEIFIHHLKSGGRLVI  118 (165)
Q Consensus        62 ~A~--~~~~~~--~nV~~~~gD~~~~~~~--~~~fD~I~i~~~~~-~---~p~~l~~~LkpgG~lvi  118 (165)
                      .++  +++.|+  ++|+++.||+.+.++.  .++||.|++++... .   .-+.+.+.|+|||.+++
T Consensus       176 ~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~  242 (282)
T 2wk1_A          176 EVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIV  242 (282)
T ss_dssp             HHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             HHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEE
Confidence            454  667776  6899999998765543  36899999999752 1   23567899999998887

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.91  E-value=4.2e-10  Score=88.91  Aligned_cols=96  Identities=10%  Similarity=-0.035  Sum_probs=67.6

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--------------CcEEEEeCCH---HHHH-----------hcc--ccc------
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--------------PNSFNINVYY---YLSG-----------GPL--SST------   67 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--------------~~V~aiD~~~---~~~~-----------~A~--~~~------   67 (165)
                      .+..+|||| +|+||.++.+++..              .+++++|.+|   +.++           .|+  ++.      
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            456899999 99999998876532              3799999987   3333           343  221      


Q ss_pred             ------C--CCCCeEEEEccCCCCCCCC-----CCccEEEEcCCCC-Cch--------HHHHhccccCcEEEEEe
Q psy8015          68 ------I--DPDHDYDLIADGRASFGDN-----GPYDAIHVGAAYP-RYP--------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        68 ------~--~~~nV~~~~gD~~~~~~~~-----~~fD~I~i~~~~~-~~p--------~~l~~~LkpgG~lvi~~  120 (165)
                            +  +..|++++.||+.+.++..     ++||+||+++..+ .-|        +.+.++|+|||+|+...
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tys  213 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT  213 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESC
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEe
Confidence                  1  2357899999987654432     3799999997543 233        36889999999998633

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.90  E-value=3e-09  Score=84.38  Aligned_cols=92  Identities=12%  Similarity=-0.019  Sum_probs=76.0

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      .+..+|||| ||+|-++..++...  .+|+++|+|+.|++.++  +..+|.. .++.+.|.....+ .++||++++.-..
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~-~~~~v~D~~~~~p-~~~~DvaL~lkti  208 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP-HRTNVADLLEDRL-DEPADVTLLLKTL  208 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC-EEEEECCTTTSCC-CSCCSEEEETTCH
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEeeecccCC-CCCcchHHHHHHH
Confidence            457899999 99999998888774  58999999999999996  5666764 8999999876655 4789999998888


Q ss_pred             CCchH-------HHHhccccCcEEEE
Q psy8015         100 PRYPE-------IFIHHLKSGGRLVI  118 (165)
Q Consensus       100 ~~~p~-------~l~~~LkpgG~lvi  118 (165)
                      +.+.+       .+++.|+|+|.+|-
T Consensus       209 ~~Le~q~kg~g~~ll~aL~~~~vvVS  234 (281)
T 3lcv_B          209 PCLETQQRGSGWEVIDIVNSPNIVVT  234 (281)
T ss_dssp             HHHHHHSTTHHHHHHHHSSCSEEEEE
T ss_pred             HHhhhhhhHHHHHHHHHhCCCCEEEe
Confidence            77654       47899999887655

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.90  E-value=7.8e-09  Score=91.95  Aligned_cols=111  Identities=10%  Similarity=0.009  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-------------------------------------------
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-------------------------------------------   47 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-------------------------------------------   47 (165)
                      ...+.|+.+. ...++.++||. ||||.+...+|..+                                           
T Consensus       177 ~LAa~ll~~~-~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~  255 (703)
T 3v97_A          177 TLAAAIVMRS-GWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEY  255 (703)
T ss_dssp             HHHHHHHHHT-TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhh-CCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccC
Confidence            4455666655 44688999999 99999988777642                                           


Q ss_pred             -CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCCC--CCCccEEEEcCCCCC-c------hH------HHHh
Q psy8015          48 -PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFGD--NGPYDAIHVGAAYPR-Y------PE------IFIH  108 (165)
Q Consensus        48 -~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~~--~~~fD~I~i~~~~~~-~------p~------~l~~  108 (165)
                       .+|+++|+|+++++.|+  ++.+|+.+ +++.++|+.+..++  .++||+|+++..+.. +      .+      ..++
T Consensus       256 ~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk  335 (703)
T 3v97_A          256 SSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMK  335 (703)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHH
T ss_pred             CccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHH
Confidence             37999999999999996  67788876 99999999764332  238999999866532 1      11      2345


Q ss_pred             ccccCcEEEEEecCC
Q psy8015         109 HLKSGGRLVIPIGDT  123 (165)
Q Consensus       109 ~LkpgG~lvi~~~~~  123 (165)
                      .+.|||++++..++.
T Consensus       336 ~~~~g~~~~ilt~~~  350 (703)
T 3v97_A          336 NQFGGWNLSLFSASP  350 (703)
T ss_dssp             HHCTTCEEEEEESCH
T ss_pred             hhCCCCeEEEEeCCH
Confidence            667899999988754

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.89  E-value=1e-08  Score=80.44  Aligned_cols=93  Identities=10%  Similarity=-0.067  Sum_probs=74.1

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR  101 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~  101 (165)
                      .+..+|||| ||+|-++..+. -..+|+++|+|+.+++.++  +...| .+..+.+.|.....++ ++||++++.-..|.
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g-~~~~~~v~D~~~~~~~-~~~DvvLllk~lh~  180 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKD-WDFTFALQDVLCAPPA-EAGDLALIFKLLPL  180 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTT-CEEEEEECCTTTSCCC-CBCSEEEEESCHHH
T ss_pred             CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcC-CCceEEEeecccCCCC-CCcchHHHHHHHHH
Confidence            467899999 99999998777 4568999999999999997  44445 5789999998776554 58999999877766


Q ss_pred             chH-------HHHhccccCcEEEEEec
Q psy8015         102 YPE-------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       102 ~p~-------~l~~~LkpgG~lvi~~~  121 (165)
                      +.+       .+++.|+++|.+| ..+
T Consensus       181 LE~q~~~~~~~ll~aL~~~~vvV-sfP  206 (253)
T 3frh_A          181 LEREQAGSAMALLQSLNTPRMAV-SFP  206 (253)
T ss_dssp             HHHHSTTHHHHHHHHCBCSEEEE-EEE
T ss_pred             hhhhchhhHHHHHHHhcCCCEEE-EcC
Confidence            543       5788999986544 454

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.85  E-value=1.2e-09  Score=86.41  Aligned_cols=84  Identities=8%  Similarity=0.002  Sum_probs=62.9

Q ss_pred             HHHHHhcCCCC--CeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cc------cC-C-C-CCeEEEEccCCC
Q psy8015          17 YVTYLSGHSKR--LDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SS------TI-D-P-DHDYDLIADGRA   82 (165)
Q Consensus        17 ~l~~l~~~~~~--~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~------~~-~-~-~nV~~~~gD~~~   82 (165)
                      +.+.+ ...++  .+|||+ ||+|..+..+|+...+|+++|+++.+++.++  ++      .. + + +|++++++|+.+
T Consensus        78 l~~al-~l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~  156 (258)
T 2oyr_A           78 VAKAV-GIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT  156 (258)
T ss_dssp             HHHHT-TCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH
T ss_pred             HHHHh-cccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHH
Confidence            34444 33567  899999 9999999999998889999999998866653  21      11 2 3 479999999865


Q ss_pred             CCCC-CCCccEEEEcCCCCC
Q psy8015          83 SFGD-NGPYDAIHVGAAYPR  101 (165)
Q Consensus        83 ~~~~-~~~fD~I~i~~~~~~  101 (165)
                      .++. .++||+|+++..++.
T Consensus       157 ~L~~~~~~fDvV~lDP~y~~  176 (258)
T 2oyr_A          157 ALTDITPRPQVVYLDPMFPH  176 (258)
T ss_dssp             HSTTCSSCCSEEEECCCCCC
T ss_pred             HHHhCcccCCEEEEcCCCCC
Confidence            3332 247999999987764

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.84  E-value=2.8e-08  Score=79.93  Aligned_cols=98  Identities=16%  Similarity=0.129  Sum_probs=78.1

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cc-----cCCCCCeEEEEccCCCCCC-CCCCccE
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SS-----TIDPDHDYDLIADGRASFG-DNGPYDA   92 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~-----~~~~~nV~~~~gD~~~~~~-~~~~fD~   92 (165)
                      +...++||-| -|.|..+..+.+.  ..+|+.+|+|+++++.+|  +.     .++-++++++.+|+.+-+. ..++||+
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv  160 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV  160 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence            3567899999 9999999888875  478999999999999996  32     2334679999999987443 3478999


Q ss_pred             EEEcCCCCCch----------HHHHhccccCcEEEEEec
Q psy8015          93 IHVGAAYPRYP----------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        93 I~i~~~~~~~p----------~~l~~~LkpgG~lvi~~~  121 (165)
                      |+++...+.-|          +.+.+.|+|||+++.-.+
T Consensus       161 Ii~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~  199 (294)
T 3o4f_A          161 IISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG  199 (294)
T ss_dssp             EEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence            99997654322          468899999999999765

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.83  E-value=2.5e-09  Score=88.32  Aligned_cols=104  Identities=15%  Similarity=0.008  Sum_probs=76.9

Q ss_pred             HHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCC------CCeEEEEccCCCCC-C
Q psy8015          18 VTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDP------DHDYDLIADGRASF-G   85 (165)
Q Consensus        18 l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~------~nV~~~~gD~~~~~-~   85 (165)
                      ...+...+||++|||+ +|.|.=|..++.+.  ++|+|.|+++..++..+  +++++.      .|+++...|+.... .
T Consensus       140 ~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~  219 (359)
T 4fzv_A          140 PVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL  219 (359)
T ss_dssp             HHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH
T ss_pred             HHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh
Confidence            3334455899999999 99999999998876  47999999999988764  444332      47999999986521 1


Q ss_pred             CCCCccEEEEcCCCCC--------ch----------------------HHHHhccccCcEEEEEec
Q psy8015          86 DNGPYDAIHVGAAYPR--------YP----------------------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        86 ~~~~fD~I~i~~~~~~--------~p----------------------~~l~~~LkpgG~lvi~~~  121 (165)
                      ..+.||.|++++.+..        -|                      +...+.|||||+||...-
T Consensus       220 ~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTC  285 (359)
T 4fzv_A          220 EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTC  285 (359)
T ss_dssp             STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred             ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Confidence            2468999999876532        01                      124678999999998754

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.81  E-value=1.3e-08  Score=88.20  Aligned_cols=98  Identities=10%  Similarity=0.059  Sum_probs=74.1

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC-----CcEEEEeCCHHHHHhcc--cccCCC--CCeEEEEccCCCC-CC--CCCCcc
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI-----PNSFNINVYYYLSGGPL--SSTIDP--DHDYDLIADGRAS-FG--DNGPYD   91 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~-----~~V~aiD~~~~~~~~A~--~~~~~~--~nV~~~~gD~~~~-~~--~~~~fD   91 (165)
                      .++.+|+|. ||||.+...+++..     .+++++|+++.+++.|+  +...|.  +++.+.++|.... |+  ...+||
T Consensus       220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD  299 (542)
T 3lkd_A          220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD  299 (542)
T ss_dssp             CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred             CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence            478899999 99999887777653     47999999999999996  334565  5789999998764 23  246899


Q ss_pred             EEEEcCCCCC-------------------ch----------HHHHhccc-cCcEEEEEecC
Q psy8015          92 AIHVGAAYPR-------------------YP----------EIFIHHLK-SGGRLVIPIGD  122 (165)
Q Consensus        92 ~I~i~~~~~~-------------------~p----------~~l~~~Lk-pgG~lvi~~~~  122 (165)
                      +|+.+..+..                   +|          ..+.+.|+ |||++.++++.
T Consensus       300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~  360 (542)
T 3lkd_A          300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPH  360 (542)
T ss_dssp             EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred             EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecc
Confidence            9998744310                   11          24578999 99999887653

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.66  E-value=2.9e-08  Score=85.99  Aligned_cols=106  Identities=12%  Similarity=-0.018  Sum_probs=73.2

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc-----------------CCcEEEEeCCHHHHHhcc--cccCCCC-C
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF-----------------IPNSFNINVYYYLSGGPL--SSTIDPD-H   72 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~-----------------~~~V~aiD~~~~~~~~A~--~~~~~~~-n   72 (165)
                      +..|++++ ...++ +|||. ||||.+...+++.                 ..+++++|+++.+++.|+  +...|++ +
T Consensus       234 v~lmv~ll-~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~  311 (544)
T 3khk_A          234 VTLIVEML-EPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFN  311 (544)
T ss_dssp             HHHHHHHH-CCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCB
T ss_pred             HHHHHHHH-hcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcc
Confidence            33444444 33444 99999 9999887766442                 236999999999999996  3334553 3


Q ss_pred             eEEEEccCCCCC-CCCCCccEEEEcCCCCC-------------------------ch----------HHHHhccccCcEE
Q psy8015          73 DYDLIADGRASF-GDNGPYDAIHVGAAYPR-------------------------YP----------EIFIHHLKSGGRL  116 (165)
Q Consensus        73 V~~~~gD~~~~~-~~~~~fD~I~i~~~~~~-------------------------~p----------~~l~~~LkpgG~l  116 (165)
                      +.+.++|..... ....+||+|+.+..+..                         .|          ..+.+.|+|||++
T Consensus       312 i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~  391 (544)
T 3khk_A          312 FGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSM  391 (544)
T ss_dssp             CCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEE
T ss_pred             cceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceE
Confidence            555888876532 23468999999855431                         22          2457899999999


Q ss_pred             EEEec
Q psy8015         117 VIPIG  121 (165)
Q Consensus       117 vi~~~  121 (165)
                      +++++
T Consensus       392 aiVlP  396 (544)
T 3khk_A          392 ALLLA  396 (544)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            88875

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.63  E-value=1.4e-07  Score=84.63  Aligned_cols=97  Identities=6%  Similarity=-0.103  Sum_probs=69.2

Q ss_pred             CCCeEEEE-ccccHHHHHHhccCC-----cEEEEeCCHHHHHhc--c--ccc----CCCCCeEEEEccCCCC-CCCCCCc
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFIP-----NSFNINVYYYLSGGP--L--SST----IDPDHDYDLIADGRAS-FGDNGPY   90 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~~-----~V~aiD~~~~~~~~A--~--~~~----~~~~nV~~~~gD~~~~-~~~~~~f   90 (165)
                      ++.+|||. ||||.+...+++..+     +++++|+++.+++.|  |  +..    .+..+..+...|.... ......|
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF  400 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV  400 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence            58899999 999999998887653     799999999999999  4  222    2444445565555431 1124689


Q ss_pred             cEEEEcCCCCC---c--------------------------------hHHHHhccccCcEEEEEecC
Q psy8015          91 DAIHVGAAYPR---Y--------------------------------PEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        91 D~I~i~~~~~~---~--------------------------------p~~l~~~LkpgG~lvi~~~~  122 (165)
                      |+|+.+..+..   .                                .+...+.|+|||++++.++.
T Consensus       401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~  467 (878)
T 3s1s_A          401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK  467 (878)
T ss_dssp             EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred             CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence            99999876521   1                                01356789999999998763

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.57  E-value=2.3e-07  Score=73.74  Aligned_cols=112  Identities=8%  Similarity=-0.031  Sum_probs=77.8

Q ss_pred             chHHHHHHHHHHhcC--CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc-cccCCCCCeEEEEccCCCC
Q psy8015          10 VSGAVAKYVTYLSGH--SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL-SSTIDPDHDYDLIADGRAS   83 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~--~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~-~~~~~~~nV~~~~gD~~~~   83 (165)
                      +|+...+|+++....  +++.+|||+ ||.|.++..++..  +.+|+++|+..++...++ ....+. |+....++....
T Consensus        56 rSRaA~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~-~ii~~~~~~dv~  134 (277)
T 3evf_A           56 VSRGTAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGW-NIITFKDKTDIH  134 (277)
T ss_dssp             SSTHHHHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTG-GGEEEECSCCTT
T ss_pred             cccHHHHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCC-CeEEEeccceeh
Confidence            677888888887653  678999999 9999999988865  458999999877632232 122232 555566664322


Q ss_pred             CCCCCCccEEEEcCCCC----Cch--------HHHHhccccC-cEEEEEecC
Q psy8015          84 FGDNGPYDAIHVGAAYP----RYP--------EIFIHHLKSG-GRLVIPIGD  122 (165)
Q Consensus        84 ~~~~~~fD~I~i~~~~~----~~p--------~~l~~~Lkpg-G~lvi~~~~  122 (165)
                      ....++||+|+++.+.+    .+.        +...+.|+|| |.+++-+=.
T Consensus       135 ~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          135 RLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             TSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             hcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence            22346899999998765    111        2235899999 999996654

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.37  E-value=5.4e-07  Score=71.93  Aligned_cols=88  Identities=6%  Similarity=-0.150  Sum_probs=70.2

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC---CC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS---FG   85 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~---~~   85 (165)
                      +|=+...+++.|. .+++..++|. ||.|..|..+++..++|+++|.|+++++.|+. ... ++++++++|..+.   +.
T Consensus         7 ~pVLl~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~-~rv~lv~~~f~~l~~~L~   83 (285)
T 1wg8_A            7 VPVLYQEALDLLA-VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHL-PGLTVVQGNFRHLKRHLA   83 (285)
T ss_dssp             CCTTHHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC-TTEEEEESCGGGHHHHHH
T ss_pred             hhHHHHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcc-CCEEEEECCcchHHHHHH
Confidence            4456778899985 4789999999 99999999999877899999999999999873 222 6899999997542   11


Q ss_pred             --CCCCccEEEEcCCCC
Q psy8015          86 --DNGPYDAIHVGAAYP  100 (165)
Q Consensus        86 --~~~~fD~I~i~~~~~  100 (165)
                        ...+||.|+++-++.
T Consensus        84 ~~g~~~vDgIL~DLGvS  100 (285)
T 1wg8_A           84 ALGVERVDGILADLGVS  100 (285)
T ss_dssp             HTTCSCEEEEEEECSCC
T ss_pred             HcCCCCcCEEEeCCccc
Confidence              125799999986665

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.31  E-value=1.8e-06  Score=68.77  Aligned_cols=111  Identities=12%  Similarity=-0.007  Sum_probs=76.9

Q ss_pred             chHHHHHHHHHHhcC--CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc-cccCCCCCeEEEEccCC-C
Q psy8015          10 VSGAVAKYVTYLSGH--SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL-SSTIDPDHDYDLIADGR-A   82 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~--~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~-~~~~~~~nV~~~~gD~~-~   82 (165)
                      +|+..-+|+++....  .++.+|||+ ||.|.++..++...  ..|+++|+..++...+. .+..+. |+.....+.. .
T Consensus        72 rSRAAfKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~-~ii~~~~~~dv~  150 (282)
T 3gcz_A           72 VSRGSAKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGW-NLIRFKDKTDVF  150 (282)
T ss_dssp             SSTHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTG-GGEEEECSCCGG
T ss_pred             ecHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCC-ceEEeeCCcchh
Confidence            677888888887654  688999999 99999999888654  57999999887655554 233332 4333333321 1


Q ss_pred             CCCCCCCccEEEEcCCCC----Cch--------HHHHhccccC--cEEEEEecC
Q psy8015          83 SFGDNGPYDAIHVGAAYP----RYP--------EIFIHHLKSG--GRLVIPIGD  122 (165)
Q Consensus        83 ~~~~~~~fD~I~i~~~~~----~~p--------~~l~~~Lkpg--G~lvi~~~~  122 (165)
                      .+ ...++|+|+++.+..    .+.        +-..+.|+||  |.+|+=+=.
T Consensus       151 ~l-~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          151 NM-EVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC  203 (282)
T ss_dssp             GS-CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred             hc-CCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence            22 246899999998876    111        1235789999  999996544

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.30  E-value=2.6e-06  Score=70.45  Aligned_cols=86  Identities=9%  Similarity=-0.083  Sum_probs=65.6

Q ss_pred             chHHHHHHHHHHh----------cCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEc
Q psy8015          10 VSGAVAKYVTYLS----------GHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIA   78 (165)
Q Consensus        10 ~~~~~~~~l~~l~----------~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g   78 (165)
                      .|+..-|+-|.+.          .+.+|++|||+ +++|.+|..+++..++|+|||..+ |...  +.  ..++|+++.+
T Consensus       185 pSRa~lKL~Ea~~~F~~~~~~~~~l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~-l~~~--l~--~~~~V~~~~~  259 (375)
T 4auk_A          185 PSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP-MAQS--LM--DTGQVTWLRE  259 (375)
T ss_dssp             SCTTHHHHHHHHHHHSCGGGHHHHSCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSC-CCHH--HH--TTTCEEEECS
T ss_pred             CCHHHHHHHHHHHhccchhhhhccCCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhh-cChh--hc--cCCCeEEEeC
Confidence            4556666666431          13689999999 999999999999999999999753 2221  11  3468999999


Q ss_pred             cCCCCCCCCCCccEEEEcCCCC
Q psy8015          79 DGRASFGDNGPYDAIHVGAAYP  100 (165)
Q Consensus        79 D~~~~~~~~~~fD~I~i~~~~~  100 (165)
                      |+....++.++||.|+++.+.+
T Consensus       260 d~~~~~~~~~~~D~vvsDm~~~  281 (375)
T 4auk_A          260 DGFKFRPTRSNISWMVCDMVEK  281 (375)
T ss_dssp             CTTTCCCCSSCEEEEEECCSSC
T ss_pred             ccccccCCCCCcCEEEEcCCCC
Confidence            9987666667899999988764

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.24  E-value=3e-06  Score=73.11  Aligned_cols=106  Identities=12%  Similarity=0.020  Sum_probs=72.2

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc---------------CCcEEEEeCCHHHHHhcc--cccCCCCCeEEE
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF---------------IPNSFNINVYYYLSGGPL--SSTIDPDHDYDL   76 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~---------------~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~   76 (165)
                      ..|.+++ ...++.+|+|- ||||.+-....+.               -..++++|+++.++..|+  +--+|.++-.+.
T Consensus       207 ~lmv~l~-~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~  285 (530)
T 3ufb_A          207 RFMVEVM-DPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRID  285 (530)
T ss_dssp             HHHHHHH-CCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEE
T ss_pred             HHHHHhh-ccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcccccc
Confidence            3444555 44789999999 9999887655432               135999999999999996  333466556777


Q ss_pred             EccCCCCC----CCCCCccEEEEcCCCCC---------ch-------------HHHHhccc-------cCcEEEEEec
Q psy8015          77 IADGRASF----GDNGPYDAIHVGAAYPR---------YP-------------EIFIHHLK-------SGGRLVIPIG  121 (165)
Q Consensus        77 ~gD~~~~~----~~~~~fD~I~i~~~~~~---------~p-------------~~l~~~Lk-------pgG~lvi~~~  121 (165)
                      .+|.....    .+..+||+|+.+..+..         .+             ..+.+.||       |||++.++++
T Consensus       286 ~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP  363 (530)
T 3ufb_A          286 PENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP  363 (530)
T ss_dssp             CSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred             ccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence            88875421    12357999999876531         11             12445665       7999998864

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.22  E-value=3.3e-06  Score=70.01  Aligned_cols=97  Identities=14%  Similarity=0.110  Sum_probs=71.1

Q ss_pred             CCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--ccc-----CC---CCCeEEEEccCCCCCC----CCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SST-----ID---PDHDYDLIADGRASFG----DNG   88 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~-----~~---~~nV~~~~gD~~~~~~----~~~   88 (165)
                      .+.++||-| -|.|..+..+.+. ..+|+.+|+|+++++.|+  +..     ++   .++++++.+|+.+-+.    ...
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            356899999 9999999887764 468999999999999996  322     11   1358999999864321    245


Q ss_pred             CccEEEEcCCCC---Cch-------------HHHHhccccCcEEEEEec
Q psy8015          89 PYDAIHVGAAYP---RYP-------------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        89 ~fD~I~i~~~~~---~~p-------------~~l~~~LkpgG~lvi~~~  121 (165)
                      +||+|+++...+   ..|             +.+.+.|+|||+++.-.+
T Consensus       284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~  332 (381)
T 3c6k_A          284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN  332 (381)
T ss_dssp             CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence            799999985331   111             246789999999998654

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.21  E-value=8.4e-07  Score=70.80  Aligned_cols=106  Identities=10%  Similarity=-0.008  Sum_probs=78.4

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC---
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF---   84 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~---   84 (165)
                      +...+.++..+.. -.+..+||+ +|||.++..+.+...+++.+|.+++..+..+  ++.  .++++++..|+...+   
T Consensus        77 p~~l~~yf~~l~~-~n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~l  153 (283)
T 2oo3_A           77 PSLFLEYISVIKQ-INLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNAL  153 (283)
T ss_dssp             CGGGHHHHHHHHH-HSSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHH
T ss_pred             cHHHHHHHHHHHH-hcCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHHh
Confidence            3444566666655 356789999 9999999999987789999999999999875  332  357999999986532   


Q ss_pred             -CCCCCccEEEEcCCCCC--chHH----H--HhccccCcEEEEE
Q psy8015          85 -GDNGPYDAIHVGAAYPR--YPEI----F--IHHLKSGGRLVIP  119 (165)
Q Consensus        85 -~~~~~fD~I~i~~~~~~--~p~~----l--~~~LkpgG~lvi~  119 (165)
                       ++..+||+||++..+..  .-+.    +  ...+.|+|.+++=
T Consensus       154 ~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~W  197 (283)
T 2oo3_A          154 LPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVW  197 (283)
T ss_dssp             CSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred             cCCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEE
Confidence             33457999999998873  2222    2  2356789998883

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.21  E-value=1.3e-05  Score=62.48  Aligned_cols=107  Identities=15%  Similarity=-0.018  Sum_probs=79.7

Q ss_pred             chHHHHHHHHHHhcC--CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc-cccCCCCCeEEEEc-cCCC
Q psy8015          10 VSGAVAKYVTYLSGH--SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL-SSTIDPDHDYDLIA-DGRA   82 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~--~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~-~~~~~~~nV~~~~g-D~~~   82 (165)
                      +|+...+|.++....  +++++|+|+ |++|.++...+...  .+|+|+|+-..=.+.-+ .+..|...|+|+.+ |...
T Consensus        60 rSRa~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~  139 (267)
T 3p8z_A           60 VSRGSAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFY  139 (267)
T ss_dssp             SSTHHHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGG
T ss_pred             cchHHHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceee
Confidence            677888888776543  689999999 99999999887765  58999999876665554 56778888999999 8754


Q ss_pred             CCCCCCCccEEEEcCCCCC-ch--H---------HHHhccccCcEEEEE
Q psy8015          83 SFGDNGPYDAIHVGAAYPR-YP--E---------IFIHHLKSGGRLVIP  119 (165)
Q Consensus        83 ~~~~~~~fD~I~i~~~~~~-~p--~---------~l~~~LkpgG~lvi~  119 (165)
                      ..+  .++|.|+|+-+... .|  |         -+.++|++ |-+++=
T Consensus       140 ~~~--~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~K  185 (267)
T 3p8z_A          140 LPP--EKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIK  185 (267)
T ss_dssp             CCC--CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEE
T ss_pred             cCC--ccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEE
Confidence            333  67999999976642 12  1         13578888 666553

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.20  E-value=1.7e-06  Score=62.75  Aligned_cols=85  Identities=11%  Similarity=0.000  Sum_probs=60.9

Q ss_pred             CCCCeEEEE-cccc-HHHHHHhc-cCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCC-CCccEEEEcCCCC
Q psy8015          25 SKRLDCLAL-TSNT-KQSTTLPT-FIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDN-GPYDAIHVGAAYP  100 (165)
Q Consensus        25 ~~~~~vLei-~GsG-~~t~~la~-~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~-~~fD~I~i~~~~~  100 (165)
                      .++.+|||| ||+| ..|..|+. ..-.|+++|+++..++             +++.|.+++..+. ..||+|+.-...+
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~-------------~v~dDiF~P~~~~Y~~~DLIYsirPP~  100 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG-------------IVRDDITSPRMEIYRGAALIYSIRPPA  100 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT-------------EECCCSSSCCHHHHTTEEEEEEESCCT
T ss_pred             CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc-------------eEEccCCCCcccccCCcCEEEEcCCCH
Confidence            457899999 9999 59999997 5557999999997765             7888887644321 4899998877777


Q ss_pred             CchHHHHhccc-cCcEEEE-EecC
Q psy8015         101 RYPEIFIHHLK-SGGRLVI-PIGD  122 (165)
Q Consensus       101 ~~p~~l~~~Lk-pgG~lvi-~~~~  122 (165)
                      ++-..+.+.-+ -|.-+++ +.+.
T Consensus       101 El~~~i~~lA~~v~adliI~pL~~  124 (153)
T 2k4m_A          101 EIHSSLMRVADAVGARLIIKPLTG  124 (153)
T ss_dssp             TTHHHHHHHHHHHTCEEEEECBTT
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCCC
Confidence            77655443332 3444444 4443

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.18  E-value=1.6e-06  Score=76.16  Aligned_cols=88  Identities=14%  Similarity=-0.059  Sum_probs=60.0

Q ss_pred             CCeEEEE-ccccHHHHH---HhccC-C--cEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCCccEEEEc
Q psy8015          27 RLDCLAL-TSNTKQSTT---LPTFI-P--NSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGPYDAIHVG   96 (165)
Q Consensus        27 ~~~vLei-~GsG~~t~~---la~~~-~--~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~fD~I~i~   96 (165)
                      ...|||| ||+|-+...   .+... .  +|+|+|.|+ ++..|+  .+..+.. .|++++||..+... .+++|+|+.-
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~L-PEKVDIIVSE  435 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVA-PEKADIIVSE  435 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCC-SSCEEEEECC
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccC-CcccCEEEEE
Confidence            4579999 999988433   33322 2  689999998 666674  3444554 49999999976322 3689999874


Q ss_pred             CCC-----CCchH---HHHhccccCcEE
Q psy8015          97 AAY-----PRYPE---IFIHHLKSGGRL  116 (165)
Q Consensus        97 ~~~-----~~~p~---~l~~~LkpgG~l  116 (165)
                      ...     +.+|+   ..-+.|||||++
T Consensus       436 wMG~fLl~E~mlevL~Ardr~LKPgGim  463 (637)
T 4gqb_A          436 LLGSFADNELSPECLDGAQHFLKDDGVS  463 (637)
T ss_dssp             CCBTTBGGGCHHHHHHHHGGGEEEEEEE
T ss_pred             cCcccccccCCHHHHHHHHHhcCCCcEE
Confidence            221     23443   335889999986

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.12  E-value=1.4e-06  Score=77.17  Aligned_cols=91  Identities=12%  Similarity=-0.116  Sum_probs=60.5

Q ss_pred             CCeEEEE-ccccHHHH---HHhccC------------CcEEEEeCCHHHHHhcc-cccCCCCC-eEEEEccCCCCCC---
Q psy8015          27 RLDCLAL-TSNTKQST---TLPTFI------------PNSFNINVYYYLSGGPL-SSTIDPDH-DYDLIADGRASFG---   85 (165)
Q Consensus        27 ~~~vLei-~GsG~~t~---~la~~~------------~~V~aiD~~~~~~~~A~-~~~~~~~n-V~~~~gD~~~~~~---   85 (165)
                      +..|||| ||+|-++.   ..++..            .+|+|+|.|+.+....+ ....+..+ |+++++|..+...   
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~  489 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK  489 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence            5689999 99999963   222212            29999999997765554 22245555 9999999876322   


Q ss_pred             --CCCCccEEEEcCCCC----C-chH---HHHhccccCcEEE
Q psy8015          86 --DNGPYDAIHVGAAYP----R-YPE---IFIHHLKSGGRLV  117 (165)
Q Consensus        86 --~~~~fD~I~i~~~~~----~-~p~---~l~~~LkpgG~lv  117 (165)
                        ..++.|+|+.-..-.    + .|+   ..-+.|||||+++
T Consensus       490 ~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          490 DRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             cCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence              136899998853321    2 222   3357899999743

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.08  E-value=6.7e-06  Score=65.62  Aligned_cols=52  Identities=6%  Similarity=-0.075  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL   64 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~   64 (165)
                      .....++++...  .+++.|||+ ||||..+..++++..+++++|+++++++.|+
T Consensus       222 ~~l~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~  274 (297)
T 2zig_A          222 LELAERLVRMFS--FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAK  274 (297)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence            456777888764  689999999 9999999999999999999999999999996

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.04  E-value=2.4e-05  Score=62.69  Aligned_cols=111  Identities=13%  Similarity=-0.046  Sum_probs=73.2

Q ss_pred             chHHHHHHHHHHhc--CCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc-cccCCCCCeEEEEc-cCCC
Q psy8015          10 VSGAVAKYVTYLSG--HSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL-SSTIDPDHDYDLIA-DGRA   82 (165)
Q Consensus        10 ~~~~~~~~l~~l~~--~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~-~~~~~~~nV~~~~g-D~~~   82 (165)
                      .++..-+|+++...  ..++++|||+ |+.|.++..+++..  ..|+++|+...+...++ ....+.+-+.+..+ |.. 
T Consensus        63 rSRaa~KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~-  141 (300)
T 3eld_A           63 VSRGAAKIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVF-  141 (300)
T ss_dssp             SSTTHHHHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTT-
T ss_pred             cchHHHHHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceee-
Confidence            56666677776643  2589999999 99999999999764  47999999876544333 12223222444333 322 


Q ss_pred             CCCCCCCccEEEEcCCCCC-ch--H---------HHHhccccC-cEEEEEecC
Q psy8015          83 SFGDNGPYDAIHVGAAYPR-YP--E---------IFIHHLKSG-GRLVIPIGD  122 (165)
Q Consensus        83 ~~~~~~~fD~I~i~~~~~~-~p--~---------~l~~~Lkpg-G~lvi~~~~  122 (165)
                      .+ ..++||+|+++.+... .+  |         -..+.|+|| |.+|+=+=.
T Consensus       142 ~l-~~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          142 TM-PTEPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             TS-CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             ec-CCCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            12 2468999999987761 11  1         235889999 999986544

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.03  E-value=3.3e-05  Score=61.92  Aligned_cols=109  Identities=11%  Similarity=-0.064  Sum_probs=78.3

Q ss_pred             chHHHHHHHHHHhcC--CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc-cccCCCCCeEEEEc-cCCC
Q psy8015          10 VSGAVAKYVTYLSGH--SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL-SSTIDPDHDYDLIA-DGRA   82 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~--~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~-~~~~~~~nV~~~~g-D~~~   82 (165)
                      +|+...+|.++....  .++++|||+ |++|.++...+...  .+|+|+|+-..=.+.-+ .+.++...|.++.+ |...
T Consensus        76 ~SR~~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~  155 (321)
T 3lkz_A           76 VSRGTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFY  155 (321)
T ss_dssp             SSTHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTS
T ss_pred             cchHHHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhh
Confidence            677888888877543  688999999 99999999777764  48999999776444333 34566656999998 8754


Q ss_pred             CCCCCCCccEEEEcCCCCC-ch--H---------HHHhccccC-cEEEEEe
Q psy8015          83 SFGDNGPYDAIHVGAAYPR-YP--E---------IFIHHLKSG-GRLVIPI  120 (165)
Q Consensus        83 ~~~~~~~fD~I~i~~~~~~-~p--~---------~l~~~Lkpg-G~lvi~~  120 (165)
                      ..+  .++|.|+++-+... .|  |         -+.++|++| |-+++=+
T Consensus       156 l~~--~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KV  204 (321)
T 3lkz_A          156 RPS--ECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKV  204 (321)
T ss_dssp             SCC--CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             CCC--CCCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEE
Confidence            333  67999999977332 11  1         134778888 7777643

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.91  E-value=3.5e-05  Score=62.91  Aligned_cols=86  Identities=13%  Similarity=-0.060  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC---C
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS---F   84 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~---~   84 (165)
                      =+....++.|. ..|+..++|. +|.|.-|..+++..   ++|+++|.|+++++.|+  ++..+++++++++..+.   +
T Consensus        44 VLl~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~--rL~~~Rv~lv~~nF~~l~~~L  120 (347)
T 3tka_A           44 VLLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK--TIDDPRFSIIHGPFSALGEYV  120 (347)
T ss_dssp             TTTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT--TCCCTTEEEEESCGGGHHHHH
T ss_pred             ccHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH--hhcCCcEEEEeCCHHHHHHHH
Confidence            35567888885 4899999999 99999999888764   68999999999999985  33346799999986431   1


Q ss_pred             CC---CCCccEEEEcCCCC
Q psy8015          85 GD---NGPYDAIHVGAAYP  100 (165)
Q Consensus        85 ~~---~~~fD~I~i~~~~~  100 (165)
                      .+   .+++|.|+.+-++.
T Consensus       121 ~~~g~~~~vDgILfDLGVS  139 (347)
T 3tka_A          121 AERDLIGKIDGILLDLGVS  139 (347)
T ss_dssp             HHTTCTTCEEEEEEECSCC
T ss_pred             HhcCCCCcccEEEECCccC
Confidence            11   13699999985443

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.89  E-value=2.8e-05  Score=63.85  Aligned_cols=69  Identities=14%  Similarity=-0.090  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHhcCC------CCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC
Q psy8015          12 GAVAKYVTYLSGHS------KRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA   82 (165)
Q Consensus        12 ~~~~~~l~~l~~~~------~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~   82 (165)
                      ....++++.+. ..      +++.|||| .|.|.+|..|...  .++|+++|+|++++...+... ..+|++++++|+..
T Consensus        39 ~i~~~Iv~~~~-l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~~~~l~ii~~D~l~  116 (353)
T 1i4w_A           39 TVYNKIFDKLD-LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-EGSPLQILKRDPYD  116 (353)
T ss_dssp             HHHHHHHHHHC-GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-TTSSCEEECSCTTC
T ss_pred             HHHHHHHHhcc-CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-cCCCEEEEECCccc
Confidence            45667777774 33      36899999 9999999999975  579999999999998775211 34689999999953

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.84  E-value=6e-05  Score=59.35  Aligned_cols=110  Identities=13%  Similarity=-0.077  Sum_probs=71.8

Q ss_pred             CCchHHHHHHHHHHhcC--CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhccccc--CCCCCeEEEEc-c
Q psy8015           8 GSVSGAVAKYVTYLSGH--SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPLSST--IDPDHDYDLIA-D   79 (165)
Q Consensus         8 ~~~~~~~~~~l~~l~~~--~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~~~~--~~~~nV~~~~g-D   79 (165)
                      +-.++...+|+|+-...  +|+++|+|+ |+.|..+..+++.  ++.|.+.++..+. ..--...  .|..=+.++.+ |
T Consensus        53 ~yRSRAayKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~~~~Gv~~i~~~~G~D  131 (269)
T 2px2_A           53 HPVSRGTAKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLMQSYGWNIVTMKSGVD  131 (269)
T ss_dssp             CCSSTHHHHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCCCSTTGGGEEEECSCC
T ss_pred             CcccHHHHHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcccCCCceEEEeeccCC
Confidence            33678888888876543  789999999 9999999999998  5555565554442 1111111  12211366657 8


Q ss_pred             CCCCCCCCCCccEEEEcCCCCC-ch-----------HHHHhccccCc-EEEEEe
Q psy8015          80 GRASFGDNGPYDAIHVGAAYPR-YP-----------EIFIHHLKSGG-RLVIPI  120 (165)
Q Consensus        80 ~~~~~~~~~~fD~I~i~~~~~~-~p-----------~~l~~~LkpgG-~lvi~~  120 (165)
                      ..+.  +..++|+|+++.+... .+           +-..++|+||| -+++=+
T Consensus       132 f~~~--~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKV  183 (269)
T 2px2_A          132 VFYK--PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKI  183 (269)
T ss_dssp             GGGS--CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             ccCC--CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEE
Confidence            7652  2357999999987641 11           12458999999 777744

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.65  E-value=7.5e-05  Score=58.37  Aligned_cols=52  Identities=6%  Similarity=-0.068  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL   64 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~   64 (165)
                      .....++++...  .+++.|||. ||||..+....++..+++++|+++..++.|+
T Consensus       199 ~~l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~  251 (260)
T 1g60_A          199 RDLIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQAN  251 (260)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence            456777887763  689999999 9999999999999999999999999999985

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.34  E-value=0.0011  Score=53.54  Aligned_cols=89  Identities=11%  Similarity=0.029  Sum_probs=65.3

Q ss_pred             cCCCCCeEEEE-ccc-cHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          23 GHSKRLDCLAL-TSN-TKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        23 ~~~~~~~vLei-~Gs-G~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      ..+++++||-. +|. |..+..+|+.. .+|+++|.+++-.+.++  ++|.+.+-   .|. +.+..  .+|+||-..+.
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~--~lGa~~v~---~~~-~~~~~--~~D~vid~~g~  244 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDAL--SMGVKHFY---TDP-KQCKE--ELDFIISTIPT  244 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHH--HTTCSEEE---SSG-GGCCS--CEEEEEECCCS
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH--hcCCCeec---CCH-HHHhc--CCCEEEECCCc
Confidence            45789999998 654 78888888765 48999999998888774  45654432   332 22222  79999877666


Q ss_pred             CCchHHHHhccccCcEEEEE
Q psy8015         100 PRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus       100 ~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +...+...+.|+|+|+++..
T Consensus       245 ~~~~~~~~~~l~~~G~iv~~  264 (348)
T 3two_A          245 HYDLKDYLKLLTYNGDLALV  264 (348)
T ss_dssp             CCCHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHHHHHHhcCCEEEEE
Confidence            65667778999999998875

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.30  E-value=0.0019  Score=53.47  Aligned_cols=74  Identities=7%  Similarity=-0.115  Sum_probs=47.2

Q ss_pred             CCeEEEE-ccccHHHHHHhcc--------C---------C--cEEEEeCC-----------HHHHHhcccccCCC-CCeE
Q psy8015          27 RLDCLAL-TSNTKQSTTLPTF--------I---------P--NSFNINVY-----------YYLSGGPLSSTIDP-DHDY   74 (165)
Q Consensus        27 ~~~vLei-~GsG~~t~~la~~--------~---------~--~V~aiD~~-----------~~~~~~A~~~~~~~-~nV~   74 (165)
                      .-+|+|+ |++|..|..+...        +         .  +|+.-|+-           +.+.+.++. ..|. .+..
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~-~~g~~~~~~  131 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK-ENGRKIGSC  131 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH-HTCCCTTSE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh-hccCCCCce
Confidence            4789999 9999999877654        0         1  36666665           444443321 1121 2346


Q ss_pred             EEEccCCC---CCCCCCCccEEEEcCCCCC
Q psy8015          75 DLIADGRA---SFGDNGPYDAIHVGAAYPR  101 (165)
Q Consensus        75 ~~~gD~~~---~~~~~~~fD~I~i~~~~~~  101 (165)
                      |+.|....   -+.+.++||.|+.+.+++.
T Consensus       132 f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHW  161 (384)
T 2efj_A          132 LIGAMPGSFYSRLFPEESMHFLHSCYCLHW  161 (384)
T ss_dssp             EEEECCSCTTSCCSCTTCEEEEEEESCTTB
T ss_pred             EEEecchhhhhccCCCCceEEEEecceeee
Confidence            77766532   3344689999999998874

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.22  E-value=0.00057  Score=56.49  Aligned_cols=95  Identities=14%  Similarity=0.106  Sum_probs=57.7

Q ss_pred             CCeEEEE-ccccHHHHHHhcc--------C---------CcEEEEeCCHHHHHhc-c-ccc----C--------CCCCeE
Q psy8015          27 RLDCLAL-TSNTKQSTTLPTF--------I---------PNSFNINVYYYLSGGP-L-SST----I--------DPDHDY   74 (165)
Q Consensus        27 ~~~vLei-~GsG~~t~~la~~--------~---------~~V~aiD~~~~~~~~A-~-~~~----~--------~~~nV~   74 (165)
                      ..+|+|+ ||+|..|..+...        +         -+|+.-|+-...-... + +..    +        ...+-.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            5789999 9999999877321        1         1466666544432111 1 100    0        001223


Q ss_pred             EEEccC---CCCCCCCCCccEEEEcCCCCCc---hHHH-----------------------------------------H
Q psy8015          75 DLIADG---RASFGDNGPYDAIHVGAAYPRY---PEIF-----------------------------------------I  107 (165)
Q Consensus        75 ~~~gD~---~~~~~~~~~fD~I~i~~~~~~~---p~~l-----------------------------------------~  107 (165)
                      |+.|.+   +.-+.+.++||.|+.+.+.+.+   |+.+                                         .
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444433   2333456899999999998753   4322                                         7


Q ss_pred             hccccCcEEEEEec
Q psy8015         108 HHLKSGGRLVIPIG  121 (165)
Q Consensus       108 ~~LkpgG~lvi~~~  121 (165)
                      +.|+|||++|+.+.
T Consensus       213 ~eL~pGG~mvl~~~  226 (374)
T 3b5i_A          213 AEVKRGGAMFLVCL  226 (374)
T ss_dssp             HHEEEEEEEEEEEE
T ss_pred             HHhCCCCEEEEEEe
Confidence            89999999999875

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=97.10  E-value=0.00048  Score=55.83  Aligned_cols=92  Identities=12%  Similarity=-0.044  Sum_probs=63.1

Q ss_pred             cCCCCCeEEEE-ccc-cHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEcc------CCCC---CCCCCC
Q psy8015          23 GHSKRLDCLAL-TSN-TKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIAD------GRAS---FGDNGP   89 (165)
Q Consensus        23 ~~~~~~~vLei-~Gs-G~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD------~~~~---~~~~~~   89 (165)
                      ..+++++||-+ +|. |..+..+|+..+  +|+++|.+++..+.++  ++|.+.  ++..+      ..+.   ... ..
T Consensus       168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~--~lGa~~--vi~~~~~~~~~~~~~i~~~~~-~g  242 (356)
T 1pl8_A          168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK--EIGADL--VLQISKESPQEIARKVEGQLG-CK  242 (356)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH--HTTCSE--EEECSSCCHHHHHHHHHHHHT-SC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH--HhCCCE--EEcCcccccchHHHHHHHHhC-CC
Confidence            45789999999 654 888888888653  7999999999888775  446542  22211      0000   011 46


Q ss_pred             ccEEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          90 YDAIHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        90 fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ||+||-....+...+..++.|+|||+++..
T Consensus       243 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~  272 (356)
T 1pl8_A          243 PEVTIECTGAEASIQAGIYATRSGGTLVLV  272 (356)
T ss_dssp             CSEEEECSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred             CCEEEECCCChHHHHHHHHHhcCCCEEEEE
Confidence            999987665544456678999999998874

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=97.10  E-value=0.00049  Score=55.61  Aligned_cols=93  Identities=9%  Similarity=-0.053  Sum_probs=64.4

Q ss_pred             cCCCCCeEEEE-ccc-cHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEc---cCCC---CCCCCCCccE
Q psy8015          23 GHSKRLDCLAL-TSN-TKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIA---DGRA---SFGDNGPYDA   92 (165)
Q Consensus        23 ~~~~~~~vLei-~Gs-G~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g---D~~~---~~~~~~~fD~   92 (165)
                      ..+++++||=+ +|. |..+..+|+..+  +|+++|.+++..+.++  ++|.+.  ++..   |..+   .......||+
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~--~lGa~~--vi~~~~~~~~~~v~~~t~g~g~D~  238 (352)
T 3fpc_A          163 NIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIAL--EYGATD--IINYKNGDIVEQILKATDGKGVDK  238 (352)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHH--HHTCCE--EECGGGSCHHHHHHHHTTTCCEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH--HhCCce--EEcCCCcCHHHHHHHHcCCCCCCE
Confidence            45889999998 554 788888888754  7999999999888775  334432  1211   1100   0112236999


Q ss_pred             EEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          93 IHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        93 I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ||-....+...+..++.|+|||+++..
T Consensus       239 v~d~~g~~~~~~~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          239 VVIAGGDVHTFAQAVKMIKPGSDIGNV  265 (352)
T ss_dssp             EEECSSCTTHHHHHHHHEEEEEEEEEC
T ss_pred             EEECCCChHHHHHHHHHHhcCCEEEEe
Confidence            987776666677788999999998874

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=97.09  E-value=0.0011  Score=53.54  Aligned_cols=93  Identities=13%  Similarity=-0.000  Sum_probs=62.6

Q ss_pred             cCCCCCeEEEE-cc-ccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEcc----CCCCCC---C---CCC
Q psy8015          23 GHSKRLDCLAL-TS-NTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIAD----GRASFG---D---NGP   89 (165)
Q Consensus        23 ~~~~~~~vLei-~G-sG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD----~~~~~~---~---~~~   89 (165)
                      ..+++++||-+ +| .|..++.+|+.. .+|+++|.+++..+.++  ++|.+.  ++..+    ..+...   .   ...
T Consensus       165 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~--~lGa~~--~~~~~~~~~~~~~i~~~~~~~~g~g  240 (352)
T 1e3j_A          165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK--NCGADV--TLVVDPAKEEESSIIERIRSAIGDL  240 (352)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH--HTTCSE--EEECCTTTSCHHHHHHHHHHHSSSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH--HhCCCE--EEcCcccccHHHHHHHHhccccCCC
Confidence            45789999999 55 378888888765 46999999999888775  445542  22211    100000   0   246


Q ss_pred             ccEEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          90 YDAIHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        90 fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +|+||-....+...+..++.|+++|+++..
T Consensus       241 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          241 PNVTIDCSGNEKCITIGINITRTGGTLMLV  270 (352)
T ss_dssp             CSEEEECSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred             CCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            999987665544456678999999998874

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=97.06  E-value=0.00048  Score=56.69  Aligned_cols=92  Identities=8%  Similarity=-0.047  Sum_probs=62.4

Q ss_pred             cCCCCCeEEEE-ccc-cHHHHHHhccC-C-cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC-------CCCCCCcc
Q psy8015          23 GHSKRLDCLAL-TSN-TKQSTTLPTFI-P-NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS-------FGDNGPYD   91 (165)
Q Consensus        23 ~~~~~~~vLei-~Gs-G~~t~~la~~~-~-~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~-------~~~~~~fD   91 (165)
                      ..+++++||-+ +|. |.++..+|+.. . +|+++|.+++..+.++  ++|.   +++.-+..+.       ......||
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~--~lGa---~~i~~~~~~~~~~~~~~~~~g~g~D  256 (398)
T 2dph_A          182 GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS--DAGF---ETIDLRNSAPLRDQIDQILGKPEVD  256 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH--TTTC---EEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH--HcCC---cEEcCCCcchHHHHHHHHhCCCCCC
Confidence            45789999999 765 88888888764 3 8999999999888775  4565   2232211110       01123699


Q ss_pred             EEEEcCCCCC--------------chHHHHhccccCcEEEEE
Q psy8015          92 AIHVGAAYPR--------------YPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        92 ~I~i~~~~~~--------------~p~~l~~~LkpgG~lvi~  119 (165)
                      +||-....+.              ..+..++.|++||+++..
T Consensus       257 vvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          257 CGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             EEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred             EEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence            9987665443              245678999999998763

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.99  E-value=0.00057  Score=55.84  Aligned_cols=91  Identities=13%  Similarity=0.079  Sum_probs=63.7

Q ss_pred             cCCCCCeEEEE-cc-ccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEc---cCCCCCCCCCCccEEEEc
Q psy8015          23 GHSKRLDCLAL-TS-NTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIA---DGRASFGDNGPYDAIHVG   96 (165)
Q Consensus        23 ~~~~~~~vLei-~G-sG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g---D~~~~~~~~~~fD~I~i~   96 (165)
                      ..+++++||-+ +| .|..+..+|+.. .+|+++|.+++..+.++  ++|.+.+  +.-   |..+...  ..||+||-.
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~--~lGa~~v--i~~~~~~~~~~~~--~g~Dvvid~  264 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK--ALGADEV--VNSRNADEMAAHL--KSFDFILNT  264 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH--HHTCSEE--EETTCHHHHHTTT--TCEEEEEEC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--HcCCcEE--eccccHHHHHHhh--cCCCEEEEC
Confidence            45789999999 65 378888888765 47999999999888775  3454322  211   1111111  479999887


Q ss_pred             CCCCCchHHHHhccccCcEEEEE
Q psy8015          97 AAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        97 ~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ...+...+...+.|+++|+++..
T Consensus       265 ~g~~~~~~~~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          265 VAAPHNLDDFTTLLKRDGTMTLV  287 (369)
T ss_dssp             CSSCCCHHHHHTTEEEEEEEEEC
T ss_pred             CCCHHHHHHHHHHhccCCEEEEe
Confidence            66665667778999999998763

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.88  E-value=0.0022  Score=51.63  Aligned_cols=67  Identities=1%  Similarity=-0.124  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADG   80 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~   80 (165)
                      .....++++...  .+++.|||- ||||..+....++..+.+++|+++...+.|+  +++.+. ..+.+.+|+
T Consensus       239 ~~l~~~~i~~~~--~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~~~-~~~~~~~~~  308 (323)
T 1boo_A          239 AKLPEFFIRMLT--EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNNI-SEEKITDIY  308 (323)
T ss_dssp             THHHHHHHHHHC--CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSCS-CHHHHHHHH
T ss_pred             HHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhccc-chHHHHHHH
Confidence            456778887763  689999999 9999999988888899999999999999985  554443 233344443

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.82  E-value=0.00043  Score=55.61  Aligned_cols=93  Identities=9%  Similarity=0.018  Sum_probs=63.7

Q ss_pred             cCCCCCeEEEE-cc-ccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC---CCC-CCCCccEEEE
Q psy8015          23 GHSKRLDCLAL-TS-NTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA---SFG-DNGPYDAIHV   95 (165)
Q Consensus        23 ~~~~~~~vLei-~G-sG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~---~~~-~~~~fD~I~i   95 (165)
                      ..+++++||-. +| .|..+..+|+.. .+|+++|.+++..+.++  ++|.+.+  +..+..+   ... ..+.+|.++.
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~--~lGa~~~--i~~~~~~~~~~~~~~~g~~d~vid  238 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLAR--RLGAEVA--VNARDTDPAAWLQKEIGGAHGVLV  238 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHH--HTTCSEE--EETTTSCHHHHHHHHHSSEEEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH--HcCCCEE--EeCCCcCHHHHHHHhCCCCCEEEE
Confidence            34789999999 55 488888888865 48999999999888774  3454321  2211110   000 0136899987


Q ss_pred             cCCCCCchHHHHhccccCcEEEEE
Q psy8015          96 GAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        96 ~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ........+...+.|+++|+++..
T Consensus       239 ~~g~~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          239 TAVSPKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             SSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred             eCCCHHHHHHHHHHhccCCEEEEe
Confidence            765555666778999999998874

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.82  E-value=0.00076  Score=55.22  Aligned_cols=92  Identities=13%  Similarity=-0.055  Sum_probs=63.4

Q ss_pred             CCCCCeEEEE-cc-ccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEcc------CCC---CCCCCCCc
Q psy8015          24 HSKRLDCLAL-TS-NTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIAD------GRA---SFGDNGPY   90 (165)
Q Consensus        24 ~~~~~~vLei-~G-sG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD------~~~---~~~~~~~f   90 (165)
                      .+++++||-. +| .|..++.+|+..+  +|++++.+++-.+.++  ++|.+.+  +..+      ..+   .......+
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~--~lGa~~v--i~~~~~~~~~~~~~v~~~~~g~g~  268 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE--EIGADLT--LNRRETSVEERRKAIMDITHGRGA  268 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH--HTTCSEE--EETTTSCHHHHHHHHHHHTTTSCE
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH--HcCCcEE--EeccccCcchHHHHHHHHhCCCCC
Confidence            4689999999 43 5777888887665  8999999999888775  4565422  2211      000   01112369


Q ss_pred             cEEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          91 DAIHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        91 D~I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      |+||-....+...+...+.|+++|+++..
T Consensus       269 Dvvid~~g~~~~~~~~~~~l~~~G~iv~~  297 (380)
T 1vj0_A          269 DFILEATGDSRALLEGSELLRRGGFYSVA  297 (380)
T ss_dssp             EEEEECSSCTTHHHHHHHHEEEEEEEEEC
T ss_pred             cEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            99987766666667778999999998774

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.81  E-value=0.00019  Score=58.45  Aligned_cols=92  Identities=8%  Similarity=0.014  Sum_probs=62.9

Q ss_pred             cCCCCCeEEEE-ccc-cHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCC---C---CCCCCCCccE
Q psy8015          23 GHSKRLDCLAL-TSN-TKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR---A---SFGDNGPYDA   92 (165)
Q Consensus        23 ~~~~~~~vLei-~Gs-G~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~---~---~~~~~~~fD~   92 (165)
                      ..+++++||-+ +|. |..++.+|+..+  +|+++|.+++..+.++  ++|.+.  ++..+..   +   .... +.||+
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~--~lGa~~--vi~~~~~~~~~~~~~~~~-gg~D~  261 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK--QLGATH--VINSKTQDPVAAIKEITD-GGVNF  261 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH--HHTCSE--EEETTTSCHHHHHHHHTT-SCEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH--HcCCCE--EecCCccCHHHHHHHhcC-CCCcE
Confidence            34789999999 765 888888887643  6999999999988875  334432  1221110   0   0111 26999


Q ss_pred             EEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          93 IHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        93 I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ||-....+...+...+.|+++|+++..
T Consensus       262 vid~~g~~~~~~~~~~~l~~~G~iv~~  288 (371)
T 1f8f_A          262 ALESTGSPEILKQGVDALGILGKIAVV  288 (371)
T ss_dssp             EEECSCCHHHHHHHHHTEEEEEEEEEC
T ss_pred             EEECCCCHHHHHHHHHHHhcCCEEEEe
Confidence            987665545556778999999998874

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=96.72  E-value=0.0018  Score=53.25  Aligned_cols=95  Identities=16%  Similarity=0.001  Sum_probs=62.8

Q ss_pred             CCeEEEE-ccccHHHHHHhccC------------------CcEEEEeCCHHHHHhc-c-cccCCC-CCeEEEEccCC---
Q psy8015          27 RLDCLAL-TSNTKQSTTLPTFI------------------PNSFNINVYYYLSGGP-L-SSTIDP-DHDYDLIADGR---   81 (165)
Q Consensus        27 ~~~vLei-~GsG~~t~~la~~~------------------~~V~aiD~~~~~~~~A-~-~~~~~~-~nV~~~~gD~~---   81 (165)
                      .-+|+|+ |++|..|..+....                  -+|+.-|+-...-... + +..... .+..|+.|...   
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            4679999 99999997665541                  1577888766666544 2 221111 13466666543   


Q ss_pred             CCCCCCCCccEEEEcCCCCC---chHH------------------------------------HHhccccCcEEEEEec
Q psy8015          82 ASFGDNGPYDAIHVGAAYPR---YPEI------------------------------------FIHHLKSGGRLVIPIG  121 (165)
Q Consensus        82 ~~~~~~~~fD~I~i~~~~~~---~p~~------------------------------------l~~~LkpgG~lvi~~~  121 (165)
                      .-+.+.+++|.++.+.+++.   +|+.                                    -.+.|+|||++|+...
T Consensus       132 ~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~  210 (359)
T 1m6e_X          132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL  210 (359)
T ss_dssp             SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred             hccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence            33445689999999988874   3321                                    1689999999999875

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.71  E-value=0.00067  Score=55.40  Aligned_cols=94  Identities=13%  Similarity=-0.009  Sum_probs=62.3

Q ss_pred             cCCCCCeEEEE-ccc-cHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeE-EEEccCCC---C---CCCCCCcc
Q psy8015          23 GHSKRLDCLAL-TSN-TKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDY-DLIADGRA---S---FGDNGPYD   91 (165)
Q Consensus        23 ~~~~~~~vLei-~Gs-G~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~-~~~gD~~~---~---~~~~~~fD   91 (165)
                      ..+++++||=. +|. |..+..+|+..+  +|+++|.+++..+.++  ++|.+.+- ....|..+   .   +. .+.||
T Consensus       179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~--~lGa~~vi~~~~~~~~~~i~~~~~~~-~gg~D  255 (370)
T 4ej6_A          179 GIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAE--EVGATATVDPSAGDVVEAIAGPVGLV-PGGVD  255 (370)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH--HHTCSEEECTTSSCHHHHHHSTTSSS-TTCEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH--HcCCCEEECCCCcCHHHHHHhhhhcc-CCCCC
Confidence            45899999988 543 777888887653  7999999999888775  23443211 00111100   0   11 23799


Q ss_pred             EEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          92 AIHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        92 ~I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +||-..+.....+...+.|++||+++..
T Consensus       256 vvid~~G~~~~~~~~~~~l~~~G~vv~~  283 (370)
T 4ej6_A          256 VVIECAGVAETVKQSTRLAKAGGTVVIL  283 (370)
T ss_dssp             EEEECSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            9887655445556778999999998874

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.54  E-value=0.0036  Score=50.45  Aligned_cols=52  Identities=13%  Similarity=0.016  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCH---HHHHhcc
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYY---YLSGGPL   64 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~---~~~~~A~   64 (165)
                      .....++++...  .+++.|||- ||||..+.....+..+.+++|+++   +.++.|+
T Consensus       229 ~~l~~~~i~~~~--~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~  284 (319)
T 1eg2_A          229 AAVIERLVRALS--HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQL  284 (319)
T ss_dssp             HHHHHHHHHHHS--CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC--CCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHH
Confidence            456778888773  689999999 999999998888899999999999   9999885

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.50  E-value=0.0026  Score=52.11  Aligned_cols=92  Identities=5%  Similarity=-0.044  Sum_probs=61.4

Q ss_pred             cCCCCCeEEEE-ccc-cHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC-------CCCCCcc
Q psy8015          23 GHSKRLDCLAL-TSN-TKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF-------GDNGPYD   91 (165)
Q Consensus        23 ~~~~~~~vLei-~Gs-G~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~-------~~~~~fD   91 (165)
                      ..+++++||-+ +|. |.++..+|+..+  +|+++|.+++.++.|+  ++|.+   .+.-+..+.+       .....+|
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~--~lGa~---~i~~~~~~~~~~~v~~~t~g~g~D  256 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK--AQGFE---IADLSLDTPLHEQIAALLGEPEVD  256 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH--HTTCE---EEETTSSSCHHHHHHHHHSSSCEE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHH--HcCCc---EEccCCcchHHHHHHHHhCCCCCC
Confidence            45789999988 544 778888888653  6999999999988885  45652   2221111100       1123699


Q ss_pred             EEEEcCCCCC---------------chHHHHhccccCcEEEEE
Q psy8015          92 AIHVGAAYPR---------------YPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        92 ~I~i~~~~~~---------------~p~~l~~~LkpgG~lvi~  119 (165)
                      +||-..+.+.               ..+...+.|++||+++..
T Consensus       257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  299 (398)
T 1kol_A          257 CAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  299 (398)
T ss_dssp             EEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence            9987655432               335678999999998763

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.43  E-value=0.0008  Score=54.57  Aligned_cols=91  Identities=18%  Similarity=0.175  Sum_probs=61.7

Q ss_pred             cCCCCCeEEEE-cc-ccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEc----cCCCCCCCCCCccEEEE
Q psy8015          23 GHSKRLDCLAL-TS-NTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIA----DGRASFGDNGPYDAIHV   95 (165)
Q Consensus        23 ~~~~~~~vLei-~G-sG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g----D~~~~~~~~~~fD~I~i   95 (165)
                      ..+++++||-+ +| .|..+..+|+.. .+|+++|.+++-.+.++  ++|.+.+  +.-    |..+...  +.||+||-
T Consensus       176 ~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~--~lGa~~v--~~~~~~~~~~~~~~--~~~D~vid  249 (360)
T 1piw_A          176 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAM--KMGADHY--IATLEEGDWGEKYF--DTFDLIVV  249 (360)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH--HHTCSEE--EEGGGTSCHHHHSC--SCEEEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH--HcCCCEE--EcCcCchHHHHHhh--cCCCEEEE
Confidence            45789999999 53 477777777754 48999999998888775  2454322  221    1111111  47999988


Q ss_pred             cCCC--CCchHHHHhccccCcEEEEE
Q psy8015          96 GAAY--PRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        96 ~~~~--~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ....  +...+..++.|++||+++..
T Consensus       250 ~~g~~~~~~~~~~~~~l~~~G~iv~~  275 (360)
T 1piw_A          250 CASSLTDIDFNIMPKAMKVGGRIVSI  275 (360)
T ss_dssp             CCSCSTTCCTTTGGGGEEEEEEEEEC
T ss_pred             CCCCCcHHHHHHHHHHhcCCCEEEEe
Confidence            7665  45555667999999998764

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.41  E-value=0.0063  Score=50.13  Aligned_cols=70  Identities=11%  Similarity=0.015  Sum_probs=53.0

Q ss_pred             CeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC--------CCCCccEEEEcC
Q psy8015          28 LDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG--------DNGPYDAIHVGA   97 (165)
Q Consensus        28 ~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~--------~~~~fD~I~i~~   97 (165)
                      .+++|+ ||+|.++.-+.+.+ ..|.++|+++.+++..+..   ..+..++.+|..+...        ....+|+|+.+.
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N---~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggp   79 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAIN---FPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGP   79 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHH---CTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECC
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHh---CCCCceEecChhhcCHHHHHhhcccCCCeeEEEecC
Confidence            589999 99999998887766 4578999999998876532   3467888899865321        135799999886


Q ss_pred             CCC
Q psy8015          98 AYP  100 (165)
Q Consensus        98 ~~~  100 (165)
                      .+.
T Consensus        80 PCQ   82 (376)
T 3g7u_A           80 PCQ   82 (376)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.39  E-value=0.0092  Score=48.18  Aligned_cols=95  Identities=8%  Similarity=-0.128  Sum_probs=62.6

Q ss_pred             cCCCCCeEEEE-cc-ccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEc-----cCCC---CCCCCCCc
Q psy8015          23 GHSKRLDCLAL-TS-NTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIA-----DGRA---SFGDNGPY   90 (165)
Q Consensus        23 ~~~~~~~vLei-~G-sG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g-----D~~~---~~~~~~~f   90 (165)
                      ..++|++||=. +| .|..+..+|+..+  +|+++|.+++-.+.++.  ++..-+.+...     |..+   .......+
T Consensus       176 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~--l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~  253 (363)
T 3m6i_A          176 GVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKE--ICPEVVTHKVERLSAEESAKKIVESFGGIEP  253 (363)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHH--HCTTCEEEECCSCCHHHHHHHHHHHTSSCCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH--hchhcccccccccchHHHHHHHHHHhCCCCC
Confidence            35789999988 54 3788888888754  59999999999998862  12111222211     1100   01113469


Q ss_pred             cEEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          91 DAIHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        91 D~I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      |++|-..+.+...+...+.|++||+++..
T Consensus       254 Dvvid~~g~~~~~~~~~~~l~~~G~iv~~  282 (363)
T 3m6i_A          254 AVALECTGVESSIAAAIWAVKFGGKVFVI  282 (363)
T ss_dssp             SEEEECSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCEEEEE
Confidence            99987666554556678999999998874

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.36  E-value=0.0018  Score=52.73  Aligned_cols=93  Identities=9%  Similarity=-0.060  Sum_probs=62.1

Q ss_pred             cCCCCCeEEEE-cc-ccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEc-cCCCCCC------CCCCcc
Q psy8015          23 GHSKRLDCLAL-TS-NTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIA-DGRASFG------DNGPYD   91 (165)
Q Consensus        23 ~~~~~~~vLei-~G-sG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g-D~~~~~~------~~~~fD   91 (165)
                      ..+++++||-+ +| .|..+..+|+..+  +|+++|.+++..+.++  ++|.+.+  +.- +..+.+.      ..+.+|
T Consensus       189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~--~lGa~~v--i~~~~~~~~~~~~~~~~~~~g~D  264 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK--VFGATDF--VNPNDHSEPISQVLSKMTNGGVD  264 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH--HTTCCEE--ECGGGCSSCHHHHHHHHHTSCBS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH--HhCCceE--EeccccchhHHHHHHHHhCCCCC
Confidence            34789999999 54 4778888887653  7999999999888775  4455422  211 1000010      013699


Q ss_pred             EEEEcCCCCCchHHHHhccccC-cEEEEE
Q psy8015          92 AIHVGAAYPRYPEIFIHHLKSG-GRLVIP  119 (165)
Q Consensus        92 ~I~i~~~~~~~p~~l~~~Lkpg-G~lvi~  119 (165)
                      +||-....+...+..++.|+++ |+++..
T Consensus       265 ~vid~~g~~~~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          265 FSLECVGNVGVMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             EEEECSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             EEEECCCCHHHHHHHHHHhhcCCcEEEEE
Confidence            9987665544556778999999 998874

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=96.36  E-value=0.0023  Score=50.21  Aligned_cols=94  Identities=7%  Similarity=-0.015  Sum_probs=64.4

Q ss_pred             CCCeEEEE-ccccHHHHHHhcc---------CCcEEEEeCCHHHHH---------------------------hc-----
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTF---------IPNSFNINVYYYLSG---------------------------GP-----   63 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~---------~~~V~aiD~~~~~~~---------------------------~A-----   63 (165)
                      -...++|+ +--|..+..++.+         -++|++.|.-+.+-+                           ..     
T Consensus        69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~  148 (257)
T 3tos_A           69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE  148 (257)
T ss_dssp             SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred             CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence            35699999 9999988887653         268999992221111                           10     


Q ss_pred             ccccCCC--CCeEEEEccCCCCCCC------CCCccEEEEcCCCC-C---chHHHHhccccCcEEEEE
Q psy8015          64 LSSTIDP--DHDYDLIADGRASFGD------NGPYDAIHVGAAYP-R---YPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        64 ~~~~~~~--~nV~~~~gD~~~~~~~------~~~fD~I~i~~~~~-~---~p~~l~~~LkpgG~lvi~  119 (165)
                      +.+.++.  +||+++.|++.+.++.      ..+||.+++++... .   .-+.+...|+|||.+++-
T Consensus       149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~D  216 (257)
T 3tos_A          149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFD  216 (257)
T ss_dssp             TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred             hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEc
Confidence            1234553  6899999998664432      35799999999751 1   234678999999998873

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.34  E-value=0.0019  Score=51.93  Aligned_cols=93  Identities=3%  Similarity=-0.054  Sum_probs=63.4

Q ss_pred             cCCCCCeEEEE-ccc-cHHHHHHhcc--CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccC--CCC---CCCCCCccEE
Q psy8015          23 GHSKRLDCLAL-TSN-TKQSTTLPTF--IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADG--RAS---FGDNGPYDAI   93 (165)
Q Consensus        23 ~~~~~~~vLei-~Gs-G~~t~~la~~--~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~--~~~---~~~~~~fD~I   93 (165)
                      ..+++++||=+ +|. |..+..+|+.  ..+|+++|.+++-.+.++  ++|.+.+  +..+.  .+.   ......+|+|
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~--~lGa~~~--i~~~~~~~~~v~~~t~g~g~d~v  243 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAR--EVGADAA--VKSGAGAADAIRELTGGQGATAV  243 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH--HTTCSEE--EECSTTHHHHHHHHHGGGCEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH--HcCCCEE--EcCCCcHHHHHHHHhCCCCCeEE
Confidence            35789999998 544 7888888875  358999999999988875  3455432  22111  000   0112369988


Q ss_pred             EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      |-....+...+...+.|+++|+++..
T Consensus       244 ~d~~G~~~~~~~~~~~l~~~G~iv~~  269 (345)
T 3jv7_A          244 FDFVGAQSTIDTAQQVVAVDGHISVV  269 (345)
T ss_dssp             EESSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred             EECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            87666554566778999999998874

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=96.29  E-value=0.007  Score=48.68  Aligned_cols=84  Identities=15%  Similarity=0.264  Sum_probs=55.5

Q ss_pred             CCCCeEEEE-c------cccHHHHHHhccC---CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEE
Q psy8015          25 SKRLDCLAL-T------SNTKQSTTLPTFI---PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIH   94 (165)
Q Consensus        25 ~~~~~vLei-~------GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~   94 (165)
                      ..+++|||+ +      ..|.  ..+.+..   +.|+++|+.+-..         ..+ .+++||..+. ...++||+|+
T Consensus       108 p~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~s---------da~-~~IqGD~~~~-~~~~k~DLVI  174 (344)
T 3r24_A          108 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVS---------DAD-STLIGDCATV-HTANKWDLII  174 (344)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBC---------SSS-EEEESCGGGE-EESSCEEEEE
T ss_pred             cCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccccc---------CCC-eEEEcccccc-ccCCCCCEEE
Confidence            358999999 8      4454  2344333   4899999977321         113 4599997543 2347899999


Q ss_pred             EcCCCCC-------------chH----HHHhccccCcEEEEEec
Q psy8015          95 VGAAYPR-------------YPE----IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        95 i~~~~~~-------------~p~----~l~~~LkpgG~lvi~~~  121 (165)
                      .+.+...             +.+    -..+.|+|||.+++=+-
T Consensus       175 SDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVF  218 (344)
T 3r24_A          175 SDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT  218 (344)
T ss_dssp             ECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEe
Confidence            9865431             112    24678999999999653

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=96.28  E-value=0.0004  Score=55.97  Aligned_cols=94  Identities=6%  Similarity=-0.153  Sum_probs=61.8

Q ss_pred             cCCCCCeEEEE-cc-ccHHHHHHhccC---CcEEEEeCCHHHHHhcccccCCCCCeE-EEE-ccCCCCCCCCCCccEEEE
Q psy8015          23 GHSKRLDCLAL-TS-NTKQSTTLPTFI---PNSFNINVYYYLSGGPLSSTIDPDHDY-DLI-ADGRASFGDNGPYDAIHV   95 (165)
Q Consensus        23 ~~~~~~~vLei-~G-sG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~~~~~~nV~-~~~-gD~~~~~~~~~~fD~I~i   95 (165)
                      .. ++++||-+ +| .|..+..+|+..   .+|+++|.+++-.+.++  ++|.+.+- ... .|....+.....||+||-
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~--~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid  244 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFAL--ELGADYVSEMKDAESLINKLTDGLGASIAID  244 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHH--HHTCSEEECHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHH--HhCCCEEeccccchHHHHHhhcCCCccEEEE
Confidence            45 89999999 64 377778888754   58999999999888775  34543221 000 111111111236999987


Q ss_pred             cCCCCCchHHHHhccccCcEEEEE
Q psy8015          96 GAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        96 ~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ....+...+...+.|+++|+++..
T Consensus       245 ~~g~~~~~~~~~~~l~~~G~iv~~  268 (344)
T 2h6e_A          245 LVGTEETTYNLGKLLAQEGAIILV  268 (344)
T ss_dssp             SSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCChHHHHHHHHHhhcCCEEEEe
Confidence            766554556678999999998874

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.27  E-value=0.0039  Score=50.54  Aligned_cols=93  Identities=9%  Similarity=-0.034  Sum_probs=62.0

Q ss_pred             cCCCCCeEEEE-ccc-cHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC------CCCCCCCccEE
Q psy8015          23 GHSKRLDCLAL-TSN-TKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA------SFGDNGPYDAI   93 (165)
Q Consensus        23 ~~~~~~~vLei-~Gs-G~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~------~~~~~~~fD~I   93 (165)
                      ..+++++||-+ +|. |..++.+|+.. .+|+++|.+++-.+.++  ++|.+.  ++..+..+      .......+|+|
T Consensus       186 ~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~--~lGa~~--vi~~~~~~~~~~v~~~~~g~g~D~v  261 (363)
T 3uog_A          186 HLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAF--ALGADH--GINRLEEDWVERVYALTGDRGADHI  261 (363)
T ss_dssp             CCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH--HHTCSE--EEETTTSCHHHHHHHHHTTCCEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHH--HcCCCE--EEcCCcccHHHHHHHHhCCCCceEE
Confidence            34789999988 543 77777777764 48999999999888774  345432  22221110      00112369998


Q ss_pred             EEcCCCCCchHHHHhccccCcEEEEEe
Q psy8015          94 HVGAAYPRYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~LkpgG~lvi~~  120 (165)
                      +-..+ ....+...+.|+++|+++..-
T Consensus       262 id~~g-~~~~~~~~~~l~~~G~iv~~G  287 (363)
T 3uog_A          262 LEIAG-GAGLGQSLKAVAPDGRISVIG  287 (363)
T ss_dssp             EEETT-SSCHHHHHHHEEEEEEEEEEC
T ss_pred             EECCC-hHHHHHHHHHhhcCCEEEEEe
Confidence            87666 455566779999999988753

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.26  E-value=0.0018  Score=47.78  Aligned_cols=93  Identities=10%  Similarity=-0.058  Sum_probs=55.8

Q ss_pred             cCCCCCeEEEE-c--cccHHHHHHhcc-CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC--CC---CCCCCCccEE
Q psy8015          23 GHSKRLDCLAL-T--SNTKQSTTLPTF-IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR--AS---FGDNGPYDAI   93 (165)
Q Consensus        23 ~~~~~~~vLei-~--GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~--~~---~~~~~~fD~I   93 (165)
                      ..+++++||.. +  |.|..++.+++. ..+|+++|.+++..+.++  ++|.+.+ +-..+..  +.   ......+|++
T Consensus        35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~--~~g~~~~-~d~~~~~~~~~~~~~~~~~~~D~v  111 (198)
T 1pqw_A           35 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS--RLGVEYV-GDSRSVDFADEILELTDGYGVDVV  111 (198)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH--TTCCSEE-EETTCSTHHHHHHHHTTTCCEEEE
T ss_pred             CCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--HcCCCEE-eeCCcHHHHHHHHHHhCCCCCeEE
Confidence            34788999877 4  334444444443 458999999998887664  2344221 1111110  00   0112369999


Q ss_pred             EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +.+.+ ....+...+.|+|||+++..
T Consensus       112 i~~~g-~~~~~~~~~~l~~~G~~v~~  136 (198)
T 1pqw_A          112 LNSLA-GEAIQRGVQILAPGGRFIEL  136 (198)
T ss_dssp             EECCC-THHHHHHHHTEEEEEEEEEC
T ss_pred             EECCc-hHHHHHHHHHhccCCEEEEE
Confidence            87654 34446678999999998874

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=96.22  E-value=0.0017  Score=51.61  Aligned_cols=87  Identities=11%  Similarity=0.017  Sum_probs=56.4

Q ss_pred             CCCCCeEEEE-cc-ccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015          24 HSKRLDCLAL-TS-NTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP  100 (165)
Q Consensus        24 ~~~~~~vLei-~G-sG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~  100 (165)
                      .+++++||=. +| .|..+..+|+.. .+|++++ +++-.+.++  ++|.+.+  + .| .+.+  ...||++|-..+.+
T Consensus       140 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~--~lGa~~v--~-~d-~~~v--~~g~Dvv~d~~g~~  210 (315)
T 3goh_A          140 LTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAA--KRGVRHL--Y-RE-PSQV--TQKYFAIFDAVNSQ  210 (315)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHH--HHTEEEE--E-SS-GGGC--CSCEEEEECC----
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHH--HcCCCEE--E-cC-HHHh--CCCccEEEECCCch
Confidence            4789999988 53 477777777754 4899999 888777764  3454322  2 24 2333  45799887655544


Q ss_pred             CchHHHHhccccCcEEEEEe
Q psy8015         101 RYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus       101 ~~p~~l~~~LkpgG~lvi~~  120 (165)
                      .. ....+.|+++|+++..-
T Consensus       211 ~~-~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          211 NA-AALVPSLKANGHIICIQ  229 (315)
T ss_dssp             ----TTGGGEEEEEEEEEEC
T ss_pred             hH-HHHHHHhcCCCEEEEEe
Confidence            44 55679999999998863

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=96.17  E-value=0.0044  Score=49.56  Aligned_cols=94  Identities=6%  Similarity=-0.026  Sum_probs=61.7

Q ss_pred             cCCCCCeEEEE-c-cccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCC------CCCCCCCCccE
Q psy8015          23 GHSKRLDCLAL-T-SNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR------ASFGDNGPYDA   92 (165)
Q Consensus        23 ~~~~~~~vLei-~-GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~------~~~~~~~~fD~   92 (165)
                      ...++++||=. + |.|.++..+++..+  .++++|.+++-.+.|+  ++|.+.  ++.-+-.      ..+.+...+|.
T Consensus       157 ~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~--~lGa~~--~i~~~~~~~~~~~~~~~~~~g~d~  232 (346)
T 4a2c_A          157 QGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAK--SFGAMQ--TFNSSEMSAPQMQSVLRELRFNQL  232 (346)
T ss_dssp             TCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH--HTTCSE--EEETTTSCHHHHHHHHGGGCSSEE
T ss_pred             ccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHH--HcCCeE--EEeCCCCCHHHHHHhhcccCCccc
Confidence            34789999988 4 44666777777653  5789999999888775  445432  2221110      01112345888


Q ss_pred             EEEcCCCCCchHHHHhccccCcEEEEEe
Q psy8015          93 IHVGAAYPRYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        93 I~i~~~~~~~p~~l~~~LkpgG~lvi~~  120 (165)
                      |+-....+...+...+.|++||++++.-
T Consensus       233 v~d~~G~~~~~~~~~~~l~~~G~~v~~g  260 (346)
T 4a2c_A          233 ILETAGVPQTVELAVEIAGPHAQLALVG  260 (346)
T ss_dssp             EEECSCSHHHHHHHHHHCCTTCEEEECC
T ss_pred             ccccccccchhhhhhheecCCeEEEEEe
Confidence            8776665555667789999999988743

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=96.12  E-value=0.0046  Score=50.05  Aligned_cols=94  Identities=13%  Similarity=0.039  Sum_probs=59.8

Q ss_pred             CC-CCCeEEEE-c-cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          24 HS-KRLDCLAL-T-SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        24 ~~-~~~~vLei-~-GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      .. ++++||=+ + |.|..+..+|+.. .+|++++.+++-.+.++ +++|.+.+- -..|........+.+|++|-....
T Consensus       177 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~-~~lGa~~vi-~~~~~~~~~~~~~g~D~vid~~g~  254 (357)
T 2cf5_A          177 LKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEAL-QDLGADDYV-IGSDQAKMSELADSLDYVIDTVPV  254 (357)
T ss_dssp             TTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHH-TTSCCSCEE-ETTCHHHHHHSTTTEEEEEECCCS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH-HHcCCceee-ccccHHHHHHhcCCCCEEEECCCC
Confidence            46 89999988 4 3466667777653 58999999988776653 245654321 111100000001369999876665


Q ss_pred             CCchHHHHhccccCcEEEEE
Q psy8015         100 PRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus       100 ~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +...+...+.|+++|+++..
T Consensus       255 ~~~~~~~~~~l~~~G~iv~~  274 (357)
T 2cf5_A          255 HHALEPYLSLLKLDGKLILM  274 (357)
T ss_dssp             CCCSHHHHTTEEEEEEEEEC
T ss_pred             hHHHHHHHHHhccCCEEEEe
Confidence            55556667999999998774

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.11  E-value=0.0022  Score=52.19  Aligned_cols=92  Identities=10%  Similarity=-0.072  Sum_probs=61.7

Q ss_pred             cCCCCCeEEEE-cc-ccHHHHHHhccC-C-cEEEEeCCHHHHHhcccccCCCCCeEEEEcc-----CCC---CCCCCCCc
Q psy8015          23 GHSKRLDCLAL-TS-NTKQSTTLPTFI-P-NSFNINVYYYLSGGPLSSTIDPDHDYDLIAD-----GRA---SFGDNGPY   90 (165)
Q Consensus        23 ~~~~~~~vLei-~G-sG~~t~~la~~~-~-~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD-----~~~---~~~~~~~f   90 (165)
                      ..+++++||-+ +| .|..++.+|+.. . +|+++|.+++..+.++  ++|.+.+  +.-+     ..+   ... .+.|
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~--~lGa~~v--i~~~~~~~~~~~~i~~~t-~gg~  262 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI--ELGATEC--LNPKDYDKPIYEVICEKT-NGGV  262 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH--HTTCSEE--ECGGGCSSCHHHHHHHHT-TSCB
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH--HcCCcEE--EecccccchHHHHHHHHh-CCCC
Confidence            34789999999 54 477778888764 3 7999999999888775  4555422  2111     000   011 1379


Q ss_pred             cEEEEcCCCCCchHHHHhccccC-cEEEEE
Q psy8015          91 DAIHVGAAYPRYPEIFIHHLKSG-GRLVIP  119 (165)
Q Consensus        91 D~I~i~~~~~~~p~~l~~~Lkpg-G~lvi~  119 (165)
                      |+||-....+...+..++.|+++ |+++..
T Consensus       263 Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~  292 (373)
T 1p0f_A          263 DYAVECAGRIETMMNALQSTYCGSGVTVVL  292 (373)
T ss_dssp             SEEEECSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             CEEEECCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            99987665544556778999999 998764

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.09  E-value=0.0023  Score=52.12  Aligned_cols=92  Identities=8%  Similarity=-0.051  Sum_probs=62.4

Q ss_pred             cCCCCCeEEEE-cc-ccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccC-CCC-------CCCCCCc
Q psy8015          23 GHSKRLDCLAL-TS-NTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADG-RAS-------FGDNGPY   90 (165)
Q Consensus        23 ~~~~~~~vLei-~G-sG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~-~~~-------~~~~~~f   90 (165)
                      ..+++++||=+ +| .|..+..+|+..  .+|+++|.+++..+.|+  ++|.+.  ++.-.- ...       .. .+.|
T Consensus       190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~--~lGa~~--vi~~~~~~~~~~~~i~~~~-~gg~  264 (378)
T 3uko_A          190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAK--KFGVNE--FVNPKDHDKPIQEVIVDLT-DGGV  264 (378)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHH--TTTCCE--EECGGGCSSCHHHHHHHHT-TSCB
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH--HcCCcE--EEccccCchhHHHHHHHhc-CCCC
Confidence            34789999988 54 477788888764  37999999999888775  445543  121110 000       11 1379


Q ss_pred             cEEEEcCCCCCchHHHHhccccC-cEEEEE
Q psy8015          91 DAIHVGAAYPRYPEIFIHHLKSG-GRLVIP  119 (165)
Q Consensus        91 D~I~i~~~~~~~p~~l~~~Lkpg-G~lvi~  119 (165)
                      |+||-....+...+...+.|++| |+++..
T Consensus       265 D~vid~~g~~~~~~~~~~~l~~g~G~iv~~  294 (378)
T 3uko_A          265 DYSFECIGNVSVMRAALECCHKGWGTSVIV  294 (378)
T ss_dssp             SEEEECSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             CEEEECCCCHHHHHHHHHHhhccCCEEEEE
Confidence            99987666555566778999997 998874

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.08  E-value=0.0029  Score=51.47  Aligned_cols=92  Identities=8%  Similarity=-0.050  Sum_probs=61.8

Q ss_pred             cCCCCCeEEEE-ccc-cHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEcc-----CCC---CCCCCCCc
Q psy8015          23 GHSKRLDCLAL-TSN-TKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIAD-----GRA---SFGDNGPY   90 (165)
Q Consensus        23 ~~~~~~~vLei-~Gs-G~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD-----~~~---~~~~~~~f   90 (165)
                      ..+++++||-+ +|. |..++.+|+..+  +|+++|.+++..+.++  ++|.+.+  +.-+     ..+   ... .+.+
T Consensus       188 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~--~lGa~~v--i~~~~~~~~~~~~~~~~~-~~g~  262 (374)
T 2jhf_A          188 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK--EVGATEC--VNPQDYKKPIQEVLTEMS-NGGV  262 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH--HTTCSEE--ECGGGCSSCHHHHHHHHT-TSCB
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH--HhCCceE--ecccccchhHHHHHHHHh-CCCC
Confidence            34789999999 543 778888887653  7999999999888775  3454321  2111     000   011 1379


Q ss_pred             cEEEEcCCCCCchHHHHhccccC-cEEEEE
Q psy8015          91 DAIHVGAAYPRYPEIFIHHLKSG-GRLVIP  119 (165)
Q Consensus        91 D~I~i~~~~~~~p~~l~~~Lkpg-G~lvi~  119 (165)
                      |+||-....+...+...+.|+++ |+++..
T Consensus       263 D~vid~~g~~~~~~~~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          263 DFSFEVIGRLDTMVTALSCCQEAYGVSVIV  292 (374)
T ss_dssp             SEEEECSCCHHHHHHHHHHBCTTTCEEEEC
T ss_pred             cEEEECCCCHHHHHHHHHHhhcCCcEEEEe
Confidence            99987665544556678999999 998864

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.05  E-value=0.0015  Score=52.48  Aligned_cols=91  Identities=11%  Similarity=-0.010  Sum_probs=61.8

Q ss_pred             cCCCCCeEEEE-c-cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC-CCCC-----CCCccEE
Q psy8015          23 GHSKRLDCLAL-T-SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA-SFGD-----NGPYDAI   93 (165)
Q Consensus        23 ~~~~~~~vLei-~-GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~-~~~~-----~~~fD~I   93 (165)
                      ..+++++||-+ + |.|..++.+++.. .+|+++|.+++-.+.++  ++|.+.+  +  |..+ .+.+     .+.+|++
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~--~lGa~~~--~--d~~~~~~~~~~~~~~~~~d~v  234 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK--ELGADLV--V--NPLKEDAAKFMKEKVGGVHAA  234 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH--HTTCSEE--E--CTTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--HCCCCEE--e--cCCCccHHHHHHHHhCCCCEE
Confidence            45789999999 5 4577777777754 58999999999888775  3454321  1  2111 0000     0369998


Q ss_pred             EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +-....+...+...+.|+++|+++..
T Consensus       235 id~~g~~~~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          235 VVTAVSKPAFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             EESSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred             EECCCCHHHHHHHHHHhhcCCEEEEe
Confidence            87666545556778999999998764

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.99  E-value=0.0038  Score=49.19  Aligned_cols=87  Identities=14%  Similarity=0.091  Sum_probs=58.5

Q ss_pred             CCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEc----cCCCCCCCCCCccEEEE
Q psy8015          24 HSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIA----DGRASFGDNGPYDAIHV   95 (165)
Q Consensus        24 ~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g----D~~~~~~~~~~fD~I~i   95 (165)
                      .+++++||-. +  |.|..++.+++.. .+|++++.+++..+.++  ++|.+.+  +.-    |..+..   ..+|+++-
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~--~~ga~~~--~~~~~~~~~~~~~---~~~d~vid  195 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL--ALGAEEA--ATYAEVPERAKAW---GGLDLVLE  195 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH--HTTCSEE--EEGGGHHHHHHHT---TSEEEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--hcCCCEE--EECCcchhHHHHh---cCceEEEE
Confidence            4789999988 5  3466666777654 48999999998877764  3454322  211    111111   46999887


Q ss_pred             cCCCCCchHHHHhccccCcEEEEE
Q psy8015          96 GAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        96 ~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                       ... ...+...+.|+++|+++..
T Consensus       196 -~g~-~~~~~~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          196 -VRG-KEVEESLGLLAHGGRLVYI  217 (302)
T ss_dssp             -CSC-TTHHHHHTTEEEEEEEEEC
T ss_pred             -CCH-HHHHHHHHhhccCCEEEEE
Confidence             554 4556778999999998863

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=95.97  E-value=0.0053  Score=49.26  Aligned_cols=92  Identities=13%  Similarity=0.101  Sum_probs=62.3

Q ss_pred             cCCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC------CCCCCCCccE
Q psy8015          23 GHSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA------SFGDNGPYDA   92 (165)
Q Consensus        23 ~~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~------~~~~~~~fD~   92 (165)
                      ..+++++||-. +  |.|..++.+++.. .+|++++.+++..+.++  ++|.+.+  +..+..+      .......+|+
T Consensus       163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~--~~ga~~~--~d~~~~~~~~~~~~~~~~~~~d~  238 (343)
T 2eih_A          163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAK--ALGADET--VNYTHPDWPKEVRRLTGGKGADK  238 (343)
T ss_dssp             CCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH--HHTCSEE--EETTSTTHHHHHHHHTTTTCEEE
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--hcCCCEE--EcCCcccHHHHHHHHhCCCCceE
Confidence            34689999988 6  5677777777654 58999999999888775  2344321  2111000      0011246999


Q ss_pred             EEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          93 IHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        93 I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ++-... ....+...+.|+++|+++..
T Consensus       239 vi~~~g-~~~~~~~~~~l~~~G~~v~~  264 (343)
T 2eih_A          239 VVDHTG-ALYFEGVIKATANGGRIAIA  264 (343)
T ss_dssp             EEESSC-SSSHHHHHHHEEEEEEEEES
T ss_pred             EEECCC-HHHHHHHHHhhccCCEEEEE
Confidence            988777 66667788999999998774

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=95.93  E-value=0.0045  Score=50.25  Aligned_cols=69  Identities=14%  Similarity=-0.019  Sum_probs=51.1

Q ss_pred             CeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCC---CCccEEEEcCCC
Q psy8015          28 LDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDN---GPYDAIHVGAAY   99 (165)
Q Consensus        28 ~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~---~~fD~I~i~~~~   99 (165)
                      .+|+|+ ||+|.++.-+....   ..|+++|+++.+++..+..   .++..++.+|..+.....   ..+|+++.+..+
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N---~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPC   78 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN---FPHTQLLAKTIEGITLEEFDRLSFDMILMSPPC   78 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH---CTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHh---ccccccccCCHHHccHhHcCcCCcCEEEEcCCC
Confidence            589999 99999999888765   3699999999999987632   234557788886543211   168999987653

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=95.76  E-value=0.014  Score=46.57  Aligned_cols=96  Identities=10%  Similarity=-0.081  Sum_probs=60.4

Q ss_pred             cCCCCCeEEEE-ccc-cHHHHHHhcc--CCcEEEEeCCHHHHHhcccccCCCCC-eEEEEccCCC---CCCCCCCccEEE
Q psy8015          23 GHSKRLDCLAL-TSN-TKQSTTLPTF--IPNSFNINVYYYLSGGPLSSTIDPDH-DYDLIADGRA---SFGDNGPYDAIH   94 (165)
Q Consensus        23 ~~~~~~~vLei-~Gs-G~~t~~la~~--~~~V~aiD~~~~~~~~A~~~~~~~~n-V~~~~gD~~~---~~~~~~~fD~I~   94 (165)
                      ..+++++||=+ +|+ |.+++.+++.  ..+|+++|.+++-.+.++  ++|.+. +.....|..+   .......+|.++
T Consensus       160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~--~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~  237 (348)
T 4eez_A          160 GVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAK--KIGADVTINSGDVNPVDEIKKITGGLGVQSAI  237 (348)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHH--HTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEE
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhh--hcCCeEEEeCCCCCHHHHhhhhcCCCCceEEE
Confidence            34789999988 654 4555555553  468999999999887775  334432 1111122111   111223578787


Q ss_pred             EcCCCCCchHHHHhccccCcEEEEEe
Q psy8015          95 VGAAYPRYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        95 i~~~~~~~p~~l~~~LkpgG~lvi~~  120 (165)
                      .+.......+...+.|+++|+++..-
T Consensus       238 ~~~~~~~~~~~~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          238 VCAVARIAFEQAVASLKPMGKMVAVA  263 (348)
T ss_dssp             ECCSCHHHHHHHHHTEEEEEEEEECC
T ss_pred             EeccCcchhheeheeecCCceEEEEe
Confidence            76665555566789999999988753

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=95.73  E-value=0.0057  Score=53.82  Aligned_cols=94  Identities=12%  Similarity=-0.029  Sum_probs=61.3

Q ss_pred             CCCeEEEE-ccccHHHHHHhccC--------------CcEEEEeC---CHHHHHhcc-------------cc--------
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFI--------------PNSFNINV---YYYLSGGPL-------------SS--------   66 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~--------------~~V~aiD~---~~~~~~~A~-------------~~--------   66 (165)
                      +.-+|+|+ .|+|+....+.+..              -+++++|.   +.+-++.|-             ++        
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            45699999 99999886654421              26899998   444443320             00        


Q ss_pred             --cC----CCCCeEEEEccCCCCCCC-----CCCccEEEEcCCCCCc-h--------HHHHhccccCcEEEEE
Q psy8015          67 --TI----DPDHDYDLIADGRASFGD-----NGPYDAIHVGAAYPRY-P--------EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        67 --~~----~~~nV~~~~gD~~~~~~~-----~~~fD~I~i~~~~~~~-p--------~~l~~~LkpgG~lvi~  119 (165)
                        ++    |.-.+++..||+.+.++.     ...||++|+++-.+.. |        ..+.+.++|||++.-.
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~  210 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTF  210 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEES
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence              11    111478899998765443     3689999999866532 2        3578889999987653

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=95.69  E-value=0.0032  Score=50.63  Aligned_cols=94  Identities=9%  Similarity=-0.009  Sum_probs=60.6

Q ss_pred             cCCCCCeEEEE-cc--ccHHHHHHhcc--CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC-----CCCCCCCCccE
Q psy8015          23 GHSKRLDCLAL-TS--NTKQSTTLPTF--IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR-----ASFGDNGPYDA   92 (165)
Q Consensus        23 ~~~~~~~vLei-~G--sG~~t~~la~~--~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~-----~~~~~~~~fD~   92 (165)
                      ..+++++||-. +|  .|..++.+++.  ..+|+++|.+++..+.++  ++|.+.+ +-..|..     ......+.+|+
T Consensus       167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~--~~g~~~~-~~~~~~~~~~~~~~~~~~~~~d~  243 (347)
T 1jvb_A          167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK--RAGADYV-INASMQDPLAEIRRITESKGVDA  243 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH--HHTCSEE-EETTTSCHHHHHHHHTTTSCEEE
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH--HhCCCEE-ecCCCccHHHHHHHHhcCCCceE
Confidence            35789999999 65  66667666664  458999999998888774  2343221 1111110     00111147999


Q ss_pred             EEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          93 IHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        93 I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ++-+...+...+...+.|+++|+++..
T Consensus       244 vi~~~g~~~~~~~~~~~l~~~G~iv~~  270 (347)
T 1jvb_A          244 VIDLNNSEKTLSVYPKALAKQGKYVMV  270 (347)
T ss_dssp             EEESCCCHHHHTTGGGGEEEEEEEEEC
T ss_pred             EEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            987766543445667999999998874

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.67  E-value=0.0036  Score=50.81  Aligned_cols=93  Identities=8%  Similarity=-0.033  Sum_probs=61.1

Q ss_pred             cCCCCCeEEEE-cc-ccHHHHHHhccC-C-cEEEEeCCHHHHHhcccccCCCCCeEEEE-ccCCCCCC------CCCCcc
Q psy8015          23 GHSKRLDCLAL-TS-NTKQSTTLPTFI-P-NSFNINVYYYLSGGPLSSTIDPDHDYDLI-ADGRASFG------DNGPYD   91 (165)
Q Consensus        23 ~~~~~~~vLei-~G-sG~~t~~la~~~-~-~V~aiD~~~~~~~~A~~~~~~~~nV~~~~-gD~~~~~~------~~~~fD   91 (165)
                      ..+++++||-+ +| .|.++..+|+.. . +|+++|.+++..+.++  ++|.+.+  +. .+..+.+.      ..+.+|
T Consensus       187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~--~lGa~~v--i~~~~~~~~~~~~v~~~~~~g~D  262 (373)
T 2fzw_A          187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK--EFGATEC--INPQDFSKPIQEVLIEMTDGGVD  262 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH--HHTCSEE--ECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH--HcCCceE--eccccccccHHHHHHHHhCCCCC
Confidence            34789999999 54 377777788754 3 7999999999888775  3454322  21 11000000      013699


Q ss_pred             EEEEcCCCCCchHHHHhccccC-cEEEEE
Q psy8015          92 AIHVGAAYPRYPEIFIHHLKSG-GRLVIP  119 (165)
Q Consensus        92 ~I~i~~~~~~~p~~l~~~Lkpg-G~lvi~  119 (165)
                      +||-........+...+.|+++ |+++..
T Consensus       263 ~vid~~g~~~~~~~~~~~l~~~~G~iv~~  291 (373)
T 2fzw_A          263 YSFECIGNVKVMRAALEACHKGWGVSVVV  291 (373)
T ss_dssp             EEEECSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             EEEECCCcHHHHHHHHHhhccCCcEEEEE
Confidence            9987665544556678999999 998864

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.61  E-value=0.0054  Score=49.88  Aligned_cols=93  Identities=9%  Similarity=-0.042  Sum_probs=61.5

Q ss_pred             cCCCCCeEEEE-cc-ccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccC-CCCCC------CCCCcc
Q psy8015          23 GHSKRLDCLAL-TS-NTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADG-RASFG------DNGPYD   91 (165)
Q Consensus        23 ~~~~~~~vLei-~G-sG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~-~~~~~------~~~~fD   91 (165)
                      ..+++++||-+ +| .|..++.+|+..+  +|+++|.+++-.+.++  ++|.+.+  +.-+. .+.+.      ..+.+|
T Consensus       192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~--~lGa~~v--i~~~~~~~~~~~~v~~~~~~g~D  267 (376)
T 1e3i_A          192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK--ALGATDC--LNPRELDKPVQDVITELTAGGVD  267 (376)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH--HTTCSEE--ECGGGCSSCHHHHHHHHHTSCBS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH--HhCCcEE--EccccccchHHHHHHHHhCCCcc
Confidence            34789999999 54 4777888887653  7999999999888774  4455322  21110 00010      013699


Q ss_pred             EEEEcCCCCCchHHHHhccccC-cEEEEE
Q psy8015          92 AIHVGAAYPRYPEIFIHHLKSG-GRLVIP  119 (165)
Q Consensus        92 ~I~i~~~~~~~p~~l~~~Lkpg-G~lvi~  119 (165)
                      +||-....+...+..++.|+++ |+++..
T Consensus       268 vvid~~G~~~~~~~~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          268 YSLDCAGTAQTLKAAVDCTVLGWGSCTVV  296 (376)
T ss_dssp             EEEESSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             EEEECCCCHHHHHHHHHHhhcCCCEEEEE
Confidence            9887665544556778999999 998763

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=95.58  E-value=0.013  Score=47.54  Aligned_cols=93  Identities=13%  Similarity=0.062  Sum_probs=59.3

Q ss_pred             CC-CCCeEEEE-c-cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC-CCCCCccEEEEcCC
Q psy8015          24 HS-KRLDCLAL-T-SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF-GDNGPYDAIHVGAA   98 (165)
Q Consensus        24 ~~-~~~~vLei-~-GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~-~~~~~fD~I~i~~~   98 (165)
                      .. ++++||=+ + |.|..++.+++.. .+|++++.+++-.+.++ +++|.+.  ++..+-.+.. ...+.+|+|+-...
T Consensus       184 ~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~-~~lGa~~--v~~~~~~~~~~~~~~~~D~vid~~g  260 (366)
T 1yqd_A          184 LDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEAL-KNFGADS--FLVSRDQEQMQAAAGTLDGIIDTVS  260 (366)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHH-HTSCCSE--EEETTCHHHHHHTTTCEEEEEECCS
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HhcCCce--EEeccCHHHHHHhhCCCCEEEECCC
Confidence            45 89999988 4 3466667777654 48999999988776653 2445432  1211100000 00136999988766


Q ss_pred             CCCchHHHHhccccCcEEEEE
Q psy8015          99 YPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        99 ~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      .....+..++.|+++|+++..
T Consensus       261 ~~~~~~~~~~~l~~~G~iv~~  281 (366)
T 1yqd_A          261 AVHPLLPLFGLLKSHGKLILV  281 (366)
T ss_dssp             SCCCSHHHHHHEEEEEEEEEC
T ss_pred             cHHHHHHHHHHHhcCCEEEEE
Confidence            654456667999999998764

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=95.57  E-value=0.0022  Score=51.53  Aligned_cols=92  Identities=10%  Similarity=-0.025  Sum_probs=59.4

Q ss_pred             cCCCCCeEEEE-cc--ccHHHHHHhcc-CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC------CCCCCCCccE
Q psy8015          23 GHSKRLDCLAL-TS--NTKQSTTLPTF-IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA------SFGDNGPYDA   92 (165)
Q Consensus        23 ~~~~~~~vLei-~G--sG~~t~~la~~-~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~------~~~~~~~fD~   92 (165)
                      ..+++++||-. +|  .|..++.+++. ..+|+++|.+++-.+.++  ++|.+.  ++..+..+      .......+|+
T Consensus       141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~--~lga~~--~~~~~~~~~~~~~~~~~~~~g~Dv  216 (340)
T 3gms_A          141 NLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELL--RLGAAY--VIDTSTAPLYETVMELTNGIGADA  216 (340)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH--HHTCSE--EEETTTSCHHHHHHHHTTTSCEEE
T ss_pred             ccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--hCCCcE--EEeCCcccHHHHHHHHhCCCCCcE
Confidence            34789999988 65  57777777765 358999999998887775  234432  12111100      0111246998


Q ss_pred             EEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          93 IHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        93 I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ++-+.+.+...+ ..+.|+++|+++..
T Consensus       217 vid~~g~~~~~~-~~~~l~~~G~iv~~  242 (340)
T 3gms_A          217 AIDSIGGPDGNE-LAFSLRPNGHFLTI  242 (340)
T ss_dssp             EEESSCHHHHHH-HHHTEEEEEEEEEC
T ss_pred             EEECCCChhHHH-HHHHhcCCCEEEEE
Confidence            887655544434 45899999998874

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=95.55  E-value=0.0038  Score=50.44  Aligned_cols=89  Identities=15%  Similarity=0.067  Sum_probs=59.5

Q ss_pred             CCCC------CeEEEE-c-cccHHH-HHHh-ccCC-c-EEEEeCCHH---HHHhcccccCCCCCeEEEEccCCC-CCCC-
Q psy8015          24 HSKR------LDCLAL-T-SNTKQS-TTLP-TFIP-N-SFNINVYYY---LSGGPLSSTIDPDHDYDLIADGRA-SFGD-   86 (165)
Q Consensus        24 ~~~~------~~vLei-~-GsG~~t-~~la-~~~~-~-V~aiD~~~~---~~~~A~~~~~~~~nV~~~~gD~~~-~~~~-   86 (165)
                      .+++      ++||=+ + |.|.++ ..+| +..+ + |+++|.+++   -.+.++  ++|.+.+     |..+ .+.+ 
T Consensus       164 ~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~--~lGa~~v-----~~~~~~~~~i  236 (357)
T 2b5w_A          164 ASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIE--ELDATYV-----DSRQTPVEDV  236 (357)
T ss_dssp             HTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHH--HTTCEEE-----ETTTSCGGGH
T ss_pred             CCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHH--HcCCccc-----CCCccCHHHH
Confidence            3688      999999 4 347777 8888 7653 4 999999987   777664  4454322     2111 1100 


Q ss_pred             ---CCCccEEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          87 ---NGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        87 ---~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                         .+.||+||-....+...+..++.|+++|+++..
T Consensus       237 ~~~~gg~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~  272 (357)
T 2b5w_A          237 PDVYEQMDFIYEATGFPKHAIQSVQALAPNGVGALL  272 (357)
T ss_dssp             HHHSCCEEEEEECSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred             HHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEE
Confidence               136999887655544456678999999998874

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=95.47  E-value=0.0063  Score=48.58  Aligned_cols=92  Identities=14%  Similarity=-0.030  Sum_probs=57.9

Q ss_pred             cCCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC------CCCCCCCccE
Q psy8015          23 GHSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA------SFGDNGPYDA   92 (165)
Q Consensus        23 ~~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~------~~~~~~~fD~   92 (165)
                      ..+++++||-. +  |.|..++.+++.. .+|++++.+++-.+.++  ++|.+.  ++..+..+      .......+|+
T Consensus       145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~--~~ga~~--~~~~~~~~~~~~~~~~~~~~g~D~  220 (334)
T 3qwb_A          145 HVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAK--EYGAEY--LINASKEDILRQVLKFTNGKGVDA  220 (334)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH--HTTCSE--EEETTTSCHHHHHHHHTTTSCEEE
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--HcCCcE--EEeCCCchHHHHHHHHhCCCCceE
Confidence            34789999877 3  3345555555543 58999999999888774  345332  12211110      0111246999


Q ss_pred             EEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          93 IHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        93 I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ++-+... ...+...+.|++||+++..
T Consensus       221 vid~~g~-~~~~~~~~~l~~~G~iv~~  246 (334)
T 3qwb_A          221 SFDSVGK-DTFEISLAALKRKGVFVSF  246 (334)
T ss_dssp             EEECCGG-GGHHHHHHHEEEEEEEEEC
T ss_pred             EEECCCh-HHHHHHHHHhccCCEEEEE
Confidence            8876654 4556678999999998874

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.42  E-value=0.024  Score=45.43  Aligned_cols=91  Identities=8%  Similarity=-0.144  Sum_probs=60.4

Q ss_pred             cCCCCCeEEEE-c--cccHHHHHHhcc-CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC--CCC----CC--CCCc
Q psy8015          23 GHSKRLDCLAL-T--SNTKQSTTLPTF-IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR--ASF----GD--NGPY   90 (165)
Q Consensus        23 ~~~~~~~vLei-~--GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~--~~~----~~--~~~f   90 (165)
                      ..+++++||-. +  |.|..++.+++. ..+|+++|.+++..+.++  ++|.+.  ++  |..  +.+    ..  .+.+
T Consensus       166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~--~~g~~~--~~--d~~~~~~~~~~~~~~~~~~~  239 (347)
T 2hcy_A          166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFR--SIGGEV--FI--DFTKEKDIVGAVLKATDGGA  239 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHH--HTTCCE--EE--ETTTCSCHHHHHHHHHTSCE
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHH--HcCCce--EE--ecCccHhHHHHHHHHhCCCC
Confidence            34789999999 6  467777777664 358999999988777664  234431  12  211  010    00  1269


Q ss_pred             cEEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          91 DAIHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        91 D~I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      |+++-+.+.....+...+.|+++|+++..
T Consensus       240 D~vi~~~g~~~~~~~~~~~l~~~G~iv~~  268 (347)
T 2hcy_A          240 HGVINVSVSEAAIEASTRYVRANGTTVLV  268 (347)
T ss_dssp             EEEEECSSCHHHHHHHTTSEEEEEEEEEC
T ss_pred             CEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence            99988776545566778999999998764

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=95.34  E-value=0.021  Score=45.47  Aligned_cols=92  Identities=10%  Similarity=-0.050  Sum_probs=57.6

Q ss_pred             cCCCCCeEEEE-c--cccHHHHHHhcc-CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC------CCCCCCCccE
Q psy8015          23 GHSKRLDCLAL-T--SNTKQSTTLPTF-IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA------SFGDNGPYDA   92 (165)
Q Consensus        23 ~~~~~~~vLei-~--GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~------~~~~~~~fD~   92 (165)
                      ..+++++||-. +  |.|..++.+++. ..+|+++|.+++..+.++  ++|.+. .+-..|..+      ... .+.+|+
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~--~~g~~~-~~d~~~~~~~~~~~~~~~-~~~~d~  217 (333)
T 1v3u_A          142 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK--QIGFDA-AFNYKTVNSLEEALKKAS-PDGYDC  217 (333)
T ss_dssp             CCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH--HTTCSE-EEETTSCSCHHHHHHHHC-TTCEEE
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--hcCCcE-EEecCCHHHHHHHHHHHh-CCCCeE
Confidence            34789999988 6  455556555554 358999999998888773  334321 111111000      001 146999


Q ss_pred             EEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          93 IHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        93 I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ++-+.+.+ ..+...+.|++||+++..
T Consensus       218 vi~~~g~~-~~~~~~~~l~~~G~~v~~  243 (333)
T 1v3u_A          218 YFDNVGGE-FLNTVLSQMKDFGKIAIC  243 (333)
T ss_dssp             EEESSCHH-HHHHHHTTEEEEEEEEEC
T ss_pred             EEECCChH-HHHHHHHHHhcCCEEEEE
Confidence            88776643 345667999999998774

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.30  E-value=0.012  Score=47.20  Aligned_cols=91  Identities=12%  Similarity=0.012  Sum_probs=57.3

Q ss_pred             CCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEcc--CCC---CCCCCCCccEEE
Q psy8015          24 HSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIAD--GRA---SFGDNGPYDAIH   94 (165)
Q Consensus        24 ~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD--~~~---~~~~~~~fD~I~   94 (165)
                      .+++++||-. +  |.|..++.+++.. .+|++++.+++-.+.++  ++|.+.+  +..+  ..+   .......+|++|
T Consensus       157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~--~~ga~~v--~~~~~~~~~~v~~~~~~~g~Dvvi  232 (342)
T 4eye_A          157 LRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVK--SVGADIV--LPLEEGWAKAVREATGGAGVDMVV  232 (342)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH--HHTCSEE--EESSTTHHHHHHHHTTTSCEEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--hcCCcEE--ecCchhHHHHHHHHhCCCCceEEE
Confidence            4689999876 4  3456666666654 48999999998887775  2344322  2211  100   011123699988


Q ss_pred             EcCCCCCchHHHHhccccCcEEEEE
Q psy8015          95 VGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        95 i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      -+.+.+ ..+...+.|+++|+++..
T Consensus       233 d~~g~~-~~~~~~~~l~~~G~iv~~  256 (342)
T 4eye_A          233 DPIGGP-AFDDAVRTLASEGRLLVV  256 (342)
T ss_dssp             ESCC---CHHHHHHTEEEEEEEEEC
T ss_pred             ECCchh-HHHHHHHhhcCCCEEEEE
Confidence            766554 455677999999998874

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.29  E-value=0.0041  Score=50.52  Aligned_cols=91  Identities=8%  Similarity=-0.045  Sum_probs=58.3

Q ss_pred             CCCeEEEEc---cccHHHHHHhcc--CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC---CCCCCCCCccEEEEcC
Q psy8015          26 KRLDCLALT---SNTKQSTTLPTF--IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR---ASFGDNGPYDAIHVGA   97 (165)
Q Consensus        26 ~~~~vLei~---GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~---~~~~~~~~fD~I~i~~   97 (165)
                      ++++||=..   +.|..+..+|+.  ..+|+++|.+++-.+.++  ++|.+.+--...|..   ... ..+.+|+++-..
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~--~lGad~vi~~~~~~~~~v~~~-~~~g~Dvvid~~  247 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVK--SLGAHHVIDHSKPLAAEVAAL-GLGAPAFVFSTT  247 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH--HTTCSEEECTTSCHHHHHHTT-CSCCEEEEEECS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH--HcCCCEEEeCCCCHHHHHHHh-cCCCceEEEECC
Confidence            678888662   335666777774  458999999998888774  345432210001110   011 234799887765


Q ss_pred             CCCCchHHHHhccccCcEEEEE
Q psy8015          98 AYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        98 ~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ..+...+...+.|+++|+++..
T Consensus       248 g~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          248 HTDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             CHHHHHHHHHHHSCTTCEEEEC
T ss_pred             CchhhHHHHHHHhcCCCEEEEE
Confidence            5444556778999999999875

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=95.28  E-value=0.032  Score=45.02  Aligned_cols=68  Identities=10%  Similarity=-0.108  Sum_probs=47.8

Q ss_pred             CCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC-CCCCccEEEEcCCC
Q psy8015          27 RLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG-DNGPYDAIHVGAAY   99 (165)
Q Consensus        27 ~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~-~~~~fD~I~i~~~~   99 (165)
                      +.+++|+ ||+|.++.-+.... ..|+++|+++..++..+...-..   .  .+|..+... ....+|+++.+..+
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~---~--~~Di~~~~~~~~~~~D~l~~gpPC   81 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK---P--EGDITQVNEKTIPDHDILCAGFPC   81 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC---C--BSCGGGSCGGGSCCCSEEEEECCC
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC---C--cCCHHHcCHhhCCCCCEEEECCCC
Confidence            5789999 99999998887765 56899999999998775221111   1  577654322 12469999887544

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=95.26  E-value=0.0069  Score=48.23  Aligned_cols=93  Identities=5%  Similarity=-0.151  Sum_probs=57.4

Q ss_pred             cCCCCCeEEEEccc---cHHHHHHhcc-CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC------CCCCCCCccE
Q psy8015          23 GHSKRLDCLALTSN---TKQSTTLPTF-IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA------SFGDNGPYDA   92 (165)
Q Consensus        23 ~~~~~~~vLei~Gs---G~~t~~la~~-~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~------~~~~~~~fD~   92 (165)
                      ..+++++||-..|+   |..++.+++. ..+|++++.+++-.+.++  ++|.+.  ++..+..+      .......+|+
T Consensus       137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~--~~Ga~~--~~~~~~~~~~~~~~~~~~~~g~Dv  212 (325)
T 3jyn_A          137 QVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAK--ALGAWE--TIDYSHEDVAKRVLELTDGKKCPV  212 (325)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH--HHTCSE--EEETTTSCHHHHHHHHTTTCCEEE
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--HcCCCE--EEeCCCccHHHHHHHHhCCCCceE
Confidence            34689999865224   4445555553 358999999999888775  234322  12111110      0111246998


Q ss_pred             EEEcCCCCCchHHHHhccccCcEEEEEe
Q psy8015          93 IHVGAAYPRYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        93 I~i~~~~~~~p~~l~~~LkpgG~lvi~~  120 (165)
                      ++-+... ...+...+.|++||+++..-
T Consensus       213 vid~~g~-~~~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          213 VYDGVGQ-DTWLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             EEESSCG-GGHHHHHTTEEEEEEEEECC
T ss_pred             EEECCCh-HHHHHHHHHhcCCCEEEEEe
Confidence            8876554 45566789999999988753

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=95.21  E-value=0.015  Score=46.73  Aligned_cols=96  Identities=14%  Similarity=0.063  Sum_probs=58.2

Q ss_pred             CCCeEEEE-ccccHHHHHHhc----cC--C--cEEEEeCCHH---------HHHhcc-----cccCCCC--CeEEEEccC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPT----FI--P--NSFNINVYYY---------LSGGPL-----SSTIDPD--HDYDLIADG   80 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~----~~--~--~V~aiD~~~~---------~~~~A~-----~~~~~~~--nV~~~~gD~   80 (165)
                      +.-+|||+ -|||+.+.....    ..  .  +.+++|.++-         ..+..+     .....-.  ..++..||+
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence            44689999 999997643221    11  2  4677876321         111111     1111112  357788998


Q ss_pred             CCCCCC--CCCccEEEEcCCCC-Cch--------HHHHhccccCcEEEEEec
Q psy8015          81 RASFGD--NGPYDAIHVGAAYP-RYP--------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        81 ~~~~~~--~~~fD~I~i~~~~~-~~p--------~~l~~~LkpgG~lvi~~~  121 (165)
                      .+.++.  ...||++|.++-.| .-|        ..+.+.++|||+++-.+.
T Consensus       176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYta  227 (308)
T 3vyw_A          176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYSS  227 (308)
T ss_dssp             HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESCC
T ss_pred             HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEeC
Confidence            765443  24799999998544 334        367899999999987553

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.15  E-value=0.019  Score=46.03  Aligned_cols=90  Identities=9%  Similarity=-0.015  Sum_probs=59.0

Q ss_pred             CCCeEEEE-cc-ccHHHHHHhccC-C-cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC------CCCCCCCccEEEE
Q psy8015          26 KRLDCLAL-TS-NTKQSTTLPTFI-P-NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA------SFGDNGPYDAIHV   95 (165)
Q Consensus        26 ~~~~vLei-~G-sG~~t~~la~~~-~-~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~------~~~~~~~fD~I~i   95 (165)
                      ++++||-+ +| .|..++.+++.. . +|+++|.+++-.+.++  ++|.+.+  +..+..+      .......+|++|-
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~--~~Ga~~~--~~~~~~~~~~~v~~~~~g~g~D~vid  242 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAK--KVGADYV--INPFEEDVVKEVMDITDGNGVDVFLE  242 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH--HHTCSEE--ECTTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH--HhCCCEE--ECCCCcCHHHHHHHHcCCCCCCEEEE
Confidence            88999999 53 467777777754 3 8999999999888775  3343321  1111000      0111236999987


Q ss_pred             cCCCCCchHHHHhccccCcEEEEE
Q psy8015          96 GAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        96 ~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ....+...+...+.|+++|+++..
T Consensus       243 ~~g~~~~~~~~~~~l~~~G~iv~~  266 (348)
T 2d8a_A          243 FSGAPKALEQGLQAVTPAGRVSLL  266 (348)
T ss_dssp             CSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCHHHHHHHHHHHhcCCEEEEE
Confidence            666544556678999999998774

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=95.13  E-value=0.025  Score=46.89  Aligned_cols=56  Identities=7%  Similarity=-0.214  Sum_probs=44.8

Q ss_pred             CCCCeEEEE-ccccHHHHHHh-ccC---CcEEEEeCCHHHHHhcc--ccc---CCC-CCeEEEEccC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLP-TFI---PNSFNINVYYYLSGGPL--SST---IDP-DHDYDLIADG   80 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la-~~~---~~V~aiD~~~~~~~~A~--~~~---~~~-~nV~~~~gD~   80 (165)
                      .+++.|+|| +..|+.|..++ +..   ++|+++|.+|+..+..+  ++.   .+. +||+++..-+
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al  291 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA  291 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence            689999999 99999999888 554   58999999999999875  333   235 6888876544

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=95.13  E-value=0.0059  Score=48.77  Aligned_cols=93  Identities=6%  Similarity=-0.099  Sum_probs=58.4

Q ss_pred             cCCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC--C---CCCCCCCccEE
Q psy8015          23 GHSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR--A---SFGDNGPYDAI   93 (165)
Q Consensus        23 ~~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~--~---~~~~~~~fD~I   93 (165)
                      ..+++++||-. +  |.|..++.+++.. .+|++++.+++-.+.+. +++|.+.+ +-..+..  +   ... .+.+|++
T Consensus       146 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~~g~~~~-~~~~~~~~~~~~~~~~-~~~~d~v  222 (336)
T 4b7c_A          146 QPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLV-EELGFDGA-IDYKNEDLAAGLKREC-PKGIDVF  222 (336)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCCSEE-EETTTSCHHHHHHHHC-TTCEEEE
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HHcCCCEE-EECCCHHHHHHHHHhc-CCCceEE
Confidence            45789999977 5  4466666666654 48999999998877662 23344321 1111110  0   001 2469988


Q ss_pred             EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +-+.+. ...+...+.|+++|+++..
T Consensus       223 i~~~g~-~~~~~~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          223 FDNVGG-EILDTVLTRIAFKARIVLC  247 (336)
T ss_dssp             EESSCH-HHHHHHHTTEEEEEEEEEC
T ss_pred             EECCCc-chHHHHHHHHhhCCEEEEE
Confidence            876553 3445677999999998874

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=94.97  E-value=0.032  Score=44.22  Aligned_cols=92  Identities=4%  Similarity=-0.126  Sum_probs=55.9

Q ss_pred             CCCCC-eEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCe-EEEEcc--CCCCCCCCCCccEEEE
Q psy8015          24 HSKRL-DCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHD-YDLIAD--GRASFGDNGPYDAIHV   95 (165)
Q Consensus        24 ~~~~~-~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD--~~~~~~~~~~fD~I~i   95 (165)
                      .++++ +||-. +  |.|..+..+++.. .+|++++.+++-.+.++  ++|.+.+ .....+  ...... .+.+|++|-
T Consensus       146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~--~lGa~~~i~~~~~~~~~~~~~~-~~~~d~vid  222 (328)
T 1xa0_A          146 LTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR--VLGAKEVLAREDVMAERIRPLD-KQRWAAAVD  222 (328)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH--HTTCSEEEECC---------CC-SCCEEEEEE
T ss_pred             CCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH--HcCCcEEEecCCcHHHHHHHhc-CCcccEEEE
Confidence            46675 88877 5  4456666666654 48999999988777764  3454322 111111  001111 246998887


Q ss_pred             cCCCCCchHHHHhccccCcEEEEE
Q psy8015          96 GAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        96 ~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ....+ ..+...+.|+++|+++..
T Consensus       223 ~~g~~-~~~~~~~~l~~~G~~v~~  245 (328)
T 1xa0_A          223 PVGGR-TLATVLSRMRYGGAVAVS  245 (328)
T ss_dssp             CSTTT-THHHHHHTEEEEEEEEEC
T ss_pred             CCcHH-HHHHHHHhhccCCEEEEE
Confidence            65553 455677999999998763

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=94.93  E-value=0.019  Score=45.50  Aligned_cols=86  Identities=5%  Similarity=-0.067  Sum_probs=52.9

Q ss_pred             eEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC--CCCCCCCCccEEEEcCCCCCc
Q psy8015          29 DCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR--ASFGDNGPYDAIHVGAAYPRY  102 (165)
Q Consensus        29 ~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~--~~~~~~~~fD~I~i~~~~~~~  102 (165)
                      +||=. +  |.|..+..+|+.. .+|++++.+++-.+.++  ++|.+.+ +-..+..  ..+. .+.+|++|-..+.+ .
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~--~lGa~~v-i~~~~~~~~~~~~-~~~~d~v~d~~g~~-~  223 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLK--SLGANRI-LSRDEFAESRPLE-KQLWAGAIDTVGDK-V  223 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH--HHTCSEE-EEGGGSSCCCSSC-CCCEEEEEESSCHH-H
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--hcCCCEE-EecCCHHHHHhhc-CCCccEEEECCCcH-H
Confidence            47755 3  3456666666654 49999999998888775  3454321 1111111  1111 24799877654433 4


Q ss_pred             hHHHHhccccCcEEEEE
Q psy8015         103 PEIFIHHLKSGGRLVIP  119 (165)
Q Consensus       103 p~~l~~~LkpgG~lvi~  119 (165)
                      .+..++.|+++|+++..
T Consensus       224 ~~~~~~~l~~~G~iv~~  240 (324)
T 3nx4_A          224 LAKVLAQMNYGGCVAAC  240 (324)
T ss_dssp             HHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHHHhcCCEEEEE
Confidence            56678999999998874

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=94.83  E-value=0.039  Score=44.02  Aligned_cols=93  Identities=5%  Similarity=-0.068  Sum_probs=58.4

Q ss_pred             cCCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC------CCCCccE
Q psy8015          23 GHSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG------DNGPYDA   92 (165)
Q Consensus        23 ~~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~------~~~~fD~   92 (165)
                      ..+++++||-. +  |.|..++.+++.. .+|++++.+++..+.++ +++|.+.+ +-..+. ..+.      ..+.+|+
T Consensus       152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~-~~~g~~~~-~d~~~~-~~~~~~~~~~~~~~~d~  228 (345)
T 2j3h_A          152 SPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLK-TKFGFDDA-FNYKEE-SDLTAALKRCFPNGIDI  228 (345)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTSCCSEE-EETTSC-SCSHHHHHHHCTTCEEE
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HHcCCceE-EecCCH-HHHHHHHHHHhCCCCcE
Confidence            34789999988 5  4566666666543 58999999998887664 13454321 111110 0110      0146999


Q ss_pred             EEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          93 IHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        93 I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ++-+.+. ...+...+.|++||+++..
T Consensus       229 vi~~~g~-~~~~~~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          229 YFENVGG-KMLDAVLVNMNMHGRIAVC  254 (345)
T ss_dssp             EEESSCH-HHHHHHHTTEEEEEEEEEC
T ss_pred             EEECCCH-HHHHHHHHHHhcCCEEEEE
Confidence            9877654 3445677999999998874

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=94.73  E-value=0.033  Score=44.58  Aligned_cols=91  Identities=9%  Similarity=-0.091  Sum_probs=58.6

Q ss_pred             cCCCCCeEEEE-cc-ccHHHHHHhccC-C-cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC---CCC--CCCCccEE
Q psy8015          23 GHSKRLDCLAL-TS-NTKQSTTLPTFI-P-NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA---SFG--DNGPYDAI   93 (165)
Q Consensus        23 ~~~~~~~vLei-~G-sG~~t~~la~~~-~-~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~---~~~--~~~~fD~I   93 (165)
                      .. ++++||-+ +| .|..+..+|+.. . +|+++|.+++-.+.++  ++ .+.  ++..+..+   ...  ....+|++
T Consensus       162 ~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~--~l-a~~--v~~~~~~~~~~~~~~~~~~g~D~v  235 (343)
T 2dq4_A          162 GV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFAR--PY-ADR--LVNPLEEDLLEVVRRVTGSGVEVL  235 (343)
T ss_dssp             CC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGT--TT-CSE--EECTTTSCHHHHHHHHHSSCEEEE
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH--Hh-HHh--ccCcCccCHHHHHHHhcCCCCCEE
Confidence            44 89999999 53 467777777764 3 8999999998888774  22 221  12111000   000  02369999


Q ss_pred             EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +-....+...+...+.|+++|+++..
T Consensus       236 id~~g~~~~~~~~~~~l~~~G~iv~~  261 (343)
T 2dq4_A          236 LEFSGNEAAIHQGLMALIPGGEARIL  261 (343)
T ss_dssp             EECSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred             EECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            87665544456678999999998764

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.70  E-value=0.066  Score=37.23  Aligned_cols=89  Identities=3%  Similarity=-0.186  Sum_probs=58.6

Q ss_pred             CeEEEEccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--CC--CCCCccEEEEcCCC
Q psy8015          28 LDCLALTSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--FG--DNGPYDAIHVGAAY   99 (165)
Q Consensus        28 ~~vLei~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~~--~~~~fD~I~i~~~~   99 (165)
                      ++|+= +|.|.++..+++.    ..+|+.+|.+++.++.++.     .++.++.+|+.+.  +.  ....+|.+++....
T Consensus         8 ~~viI-iG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~-----~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~   81 (140)
T 3fwz_A            8 NHALL-VGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE-----RGVRAVLGNAANEEIMQLAHLECAKWLILTIPN   81 (140)
T ss_dssp             SCEEE-ECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-----TTCEEEESCTTSHHHHHHTTGGGCSEEEECCSC
T ss_pred             CCEEE-ECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----cCCCEEECCCCCHHHHHhcCcccCCEEEEECCC
Confidence            44533 6888888777764    3589999999999887642     2467889998642  11  12468999886544


Q ss_pred             CCch---HHHHhccccCcEEEEEecC
Q psy8015         100 PRYP---EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus       100 ~~~p---~~l~~~LkpgG~lvi~~~~  122 (165)
                      ...-   -...+.+.|+.++++-...
T Consensus        82 ~~~n~~~~~~a~~~~~~~~iiar~~~  107 (140)
T 3fwz_A           82 GYEAGEIVASARAKNPDIEIIARAHY  107 (140)
T ss_dssp             HHHHHHHHHHHHHHCSSSEEEEEESS
T ss_pred             hHHHHHHHHHHHHHCCCCeEEEEECC
Confidence            3211   1345677888887776553

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=94.64  E-value=0.029  Score=45.37  Aligned_cols=85  Identities=15%  Similarity=-0.068  Sum_probs=56.4

Q ss_pred             CCeEEEE-c-cccHHHHHHhccC-CcEEEEeCCH---HHHHhcccccCCCCCeEEEEccCCCCCCC-----CCCccEEEE
Q psy8015          27 RLDCLAL-T-SNTKQSTTLPTFI-PNSFNINVYY---YLSGGPLSSTIDPDHDYDLIADGRASFGD-----NGPYDAIHV   95 (165)
Q Consensus        27 ~~~vLei-~-GsG~~t~~la~~~-~~V~aiD~~~---~~~~~A~~~~~~~~nV~~~~gD~~~~~~~-----~~~fD~I~i   95 (165)
                      +++||-+ + |.|..++.+++.. .+|+++|.++   +-.+.++  ++|.+.+     | .+.+.+     .+.+|++|-
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~--~~ga~~v-----~-~~~~~~~~~~~~~~~d~vid  252 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIE--ETKTNYY-----N-SSNGYDKLKDSVGKFDVIID  252 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHH--HHTCEEE-----E-CTTCSHHHHHHHCCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHH--HhCCcee-----c-hHHHHHHHHHhCCCCCEEEE
Confidence            9999988 4 3355566666543 4899999997   6666664  3344322     2 111111     146999988


Q ss_pred             cCCCCCch-HHHHhccccCcEEEEE
Q psy8015          96 GAAYPRYP-EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        96 ~~~~~~~p-~~l~~~LkpgG~lvi~  119 (165)
                      ..+.+... +...+.|+++|+++..
T Consensus       253 ~~g~~~~~~~~~~~~l~~~G~iv~~  277 (366)
T 2cdc_A          253 ATGADVNILGNVIPLLGRNGVLGLF  277 (366)
T ss_dssp             CCCCCTHHHHHHGGGEEEEEEEEEC
T ss_pred             CCCChHHHHHHHHHHHhcCCEEEEE
Confidence            77766566 7788999999998774

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.52  E-value=0.014  Score=47.97  Aligned_cols=92  Identities=5%  Similarity=-0.082  Sum_probs=58.6

Q ss_pred             CCCCCeEEEE-cc-ccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC------CCCCCCCccEE
Q psy8015          24 HSKRLDCLAL-TS-NTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA------SFGDNGPYDAI   93 (165)
Q Consensus        24 ~~~~~~vLei-~G-sG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~------~~~~~~~fD~I   93 (165)
                      .+++++||=+ +| .|..+..+|+..+  +|+++|.+++-.+.++  ++|.+.  ++..+..+      .......+|+|
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~--~lGa~~--vi~~~~~~~~~~i~~~t~g~g~D~v  286 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAK--ELGADH--VIDPTKENFVEAVLDYTNGLGAKLF  286 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH--HHTCSE--EECTTTSCHHHHHHHHTTTCCCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH--HcCCCE--EEcCCCCCHHHHHHHHhCCCCCCEE
Confidence            4789999988 43 3677777777653  7999999999988885  334332  12111100      01122369998


Q ss_pred             EEcCCCC-CchHHHHhcc----ccCcEEEEE
Q psy8015          94 HVGAAYP-RYPEIFIHHL----KSGGRLVIP  119 (165)
Q Consensus        94 ~i~~~~~-~~p~~l~~~L----kpgG~lvi~  119 (165)
                      |-..+.+ ...+.+.+.|    +++|+++..
T Consensus       287 id~~g~~~~~~~~~~~~l~~~~~~~G~iv~~  317 (404)
T 3ip1_A          287 LEATGVPQLVWPQIEEVIWRARGINATVAIV  317 (404)
T ss_dssp             EECSSCHHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred             EECCCCcHHHHHHHHHHHHhccCCCcEEEEe
Confidence            8765554 2344555666    999998874

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=94.50  E-value=0.0054  Score=49.33  Aligned_cols=90  Identities=10%  Similarity=-0.020  Sum_probs=56.3

Q ss_pred             CCCeEEEEcccc---HHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEcc--CCC---CCCCCCCccEEEEc
Q psy8015          26 KRLDCLALTSNT---KQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIAD--GRA---SFGDNGPYDAIHVG   96 (165)
Q Consensus        26 ~~~~vLei~GsG---~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD--~~~---~~~~~~~fD~I~i~   96 (165)
                      ++++||=..|+|   ..++.+++.. .+|++++.+++-.+.++  ++|.+.+  +..+  ..+   .. ....||+|+-.
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~--~lGa~~v--i~~~~~~~~~~~~~-~~~g~Dvv~d~  224 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTK--KMGADIV--LNHKESLLNQFKTQ-GIELVDYVFCT  224 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHH--HHTCSEE--ECTTSCHHHHHHHH-TCCCEEEEEES
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--hcCCcEE--EECCccHHHHHHHh-CCCCccEEEEC
Confidence            789998654454   4455555543 48999999998888775  2344321  1111  000   01 12469988876


Q ss_pred             CCCCCchHHHHhccccCcEEEEEe
Q psy8015          97 AAYPRYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        97 ~~~~~~p~~l~~~LkpgG~lvi~~  120 (165)
                      ...+...+...+.|+++|+++...
T Consensus       225 ~g~~~~~~~~~~~l~~~G~iv~~~  248 (346)
T 3fbg_A          225 FNTDMYYDDMIQLVKPRGHIATIV  248 (346)
T ss_dssp             SCHHHHHHHHHHHEEEEEEEEESS
T ss_pred             CCchHHHHHHHHHhccCCEEEEEC
Confidence            554444566789999999997643

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=94.42  E-value=0.016  Score=46.98  Aligned_cols=91  Identities=11%  Similarity=-0.054  Sum_probs=52.8

Q ss_pred             CCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC---CCCCCCCCccEEEEc
Q psy8015          24 HSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR---ASFGDNGPYDAIHVG   96 (165)
Q Consensus        24 ~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~---~~~~~~~~fD~I~i~   96 (165)
                      .+++++||=. +  |.|..+..+++.. .+|++++ +++-.+.+  +++|.+.+  +.-+..   +.......+|++|-.
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~--~~lGa~~v--~~~~~~~~~~~~~~~~g~D~vid~  255 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELV--RKLGADDV--IDYKSGSVEEQLKSLKPFDFILDN  255 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHH--HHTTCSEE--EETTSSCHHHHHHTSCCBSEEEES
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHH--HHcCCCEE--EECCchHHHHHHhhcCCCCEEEEC
Confidence            4688999877 2  2345555556544 4899998 66655555  34554321  211110   111112469998876


Q ss_pred             CCCC-CchHHHHhccccCcEEEEE
Q psy8015          97 AAYP-RYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        97 ~~~~-~~p~~l~~~LkpgG~lvi~  119 (165)
                      .+.+ ..-+...+.|++||+++..
T Consensus       256 ~g~~~~~~~~~~~~l~~~G~iv~~  279 (375)
T 2vn8_A          256 VGGSTETWAPDFLKKWSGATYVTL  279 (375)
T ss_dssp             SCTTHHHHGGGGBCSSSCCEEEES
T ss_pred             CCChhhhhHHHHHhhcCCcEEEEe
Confidence            5544 1224556889999998774

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=94.41  E-value=0.016  Score=46.13  Aligned_cols=92  Identities=5%  Similarity=-0.120  Sum_probs=57.0

Q ss_pred             cCCCCCeEEEE-c--cccHHHHHHhcc-CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC---C---CCCCCCccE
Q psy8015          23 GHSKRLDCLAL-T--SNTKQSTTLPTF-IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA---S---FGDNGPYDA   92 (165)
Q Consensus        23 ~~~~~~~vLei-~--GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~---~---~~~~~~fD~   92 (165)
                      ..+++++||-. +  |.|..++.+++. ..+|+++|.+++..+.++  ++|.+.  .+..+..+   .   ......+|+
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~--~~g~~~--~~d~~~~~~~~~i~~~~~~~~~d~  217 (333)
T 1wly_A          142 KVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETAR--KLGCHH--TINYSTQDFAEVVREITGGKGVDV  217 (333)
T ss_dssp             CCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH--HHTCSE--EEETTTSCHHHHHHHHHTTCCEEE
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--HcCCCE--EEECCCHHHHHHHHHHhCCCCCeE
Confidence            34688999876 4  345555555554 358999999998877764  234321  11111000   0   001236999


Q ss_pred             EEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          93 IHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        93 I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ++-+.+. ...+...+.|+++|+++..
T Consensus       218 vi~~~g~-~~~~~~~~~l~~~G~iv~~  243 (333)
T 1wly_A          218 VYDSIGK-DTLQKSLDCLRPRGMCAAY  243 (333)
T ss_dssp             EEECSCT-TTHHHHHHTEEEEEEEEEC
T ss_pred             EEECCcH-HHHHHHHHhhccCCEEEEE
Confidence            9877665 5556778999999998774

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=94.36  E-value=0.034  Score=55.78  Aligned_cols=92  Identities=13%  Similarity=0.101  Sum_probs=47.7

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC-------CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCC--CCCCCCCccE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI-------PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRA--SFGDNGPYDA   92 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~-------~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~--~~~~~~~fD~   92 (165)
                      .|..+|||| .|+|..+..+....       .+.+-.|+++...+.|+  ++.+   +++...-|...  +. ....||+
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~---di~~~~~d~~~~~~~-~~~~ydl 1314 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL---HVTQGQWDPANPAPG-SLGKADL 1314 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH---TEEEECCCSSCCCC------CCE
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc---ccccccccccccccC-CCCceeE
Confidence            357899999 99997765443321       25677899998888775  3332   22221112211  11 2356999


Q ss_pred             EEEcCCCCC---c---hHHHHhccccCcEEEEEe
Q psy8015          93 IHVGAAYPR---Y---PEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        93 I~i~~~~~~---~---p~~l~~~LkpgG~lvi~~  120 (165)
                      |+.....+.   +   ...+.+.|||||+|++..
T Consensus      1315 via~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1315 LVCNCALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             EEEECC--------------------CCEEEEEE
T ss_pred             EEEcccccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence            998876652   2   245678999999998854

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=94.18  E-value=0.097  Score=42.07  Aligned_cols=91  Identities=11%  Similarity=-0.047  Sum_probs=55.2

Q ss_pred             CCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC------CCCCCCCccEE
Q psy8015          24 HSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA------SFGDNGPYDAI   93 (165)
Q Consensus        24 ~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~------~~~~~~~fD~I   93 (165)
                      .+++++||-. +  |.|..++.+++.. .+|+++|.+++..+.++  ++|.+.  .+..+..+      .......+|++
T Consensus       160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~--~~g~~~--~~~~~~~~~~~~~~~~~~~~~~d~v  235 (354)
T 2j8z_A          160 VQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAE--KLGAAA--GFNYKKEDFSEATLKFTKGAGVNLI  235 (354)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH--HHTCSE--EEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--HcCCcE--EEecCChHHHHHHHHHhcCCCceEE
Confidence            4688999866 3  2334444444433 58999999998888774  234321  11111100      00112369999


Q ss_pred             EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +-+.+.+ ..+...+.|+++|+++..
T Consensus       236 i~~~G~~-~~~~~~~~l~~~G~iv~~  260 (354)
T 2j8z_A          236 LDCIGGS-YWEKNVNCLALDGRWVLY  260 (354)
T ss_dssp             EESSCGG-GHHHHHHHEEEEEEEEEC
T ss_pred             EECCCch-HHHHHHHhccCCCEEEEE
Confidence            8776654 445667999999998874

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.14  E-value=0.01  Score=47.21  Aligned_cols=93  Identities=6%  Similarity=-0.136  Sum_probs=55.9

Q ss_pred             cCCCCCeEEEEccccHHH---HHHhcc-CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC--C---CCCCCCCccEE
Q psy8015          23 GHSKRLDCLALTSNTKQS---TTLPTF-IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR--A---SFGDNGPYDAI   93 (165)
Q Consensus        23 ~~~~~~~vLei~GsG~~t---~~la~~-~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~--~---~~~~~~~fD~I   93 (165)
                      ..+++++||-.-|+|.++   +.+++. ..+|+++|.+++..+.++  ++|.+. .+-..|..  +   .......+|++
T Consensus       137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~--~~g~~~-~~~~~~~~~~~~~~~~~~~~~~D~v  213 (327)
T 1qor_A          137 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL--KAGAWQ-VINYREEDLVERLKEITGGKKVRVV  213 (327)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH--HHTCSE-EEETTTSCHHHHHHHHTTTCCEEEE
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--HcCCCE-EEECCCccHHHHHHHHhCCCCceEE
Confidence            346889998662244444   444432 358999999998887774  234321 11111110  0   00112369999


Q ss_pred             EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +-+.+ ....+...+.|+++|+++..
T Consensus       214 i~~~g-~~~~~~~~~~l~~~G~iv~~  238 (327)
T 1qor_A          214 YDSVG-RDTWERSLDCLQRRGLMVSF  238 (327)
T ss_dssp             EECSC-GGGHHHHHHTEEEEEEEEEC
T ss_pred             EECCc-hHHHHHHHHHhcCCCEEEEE
Confidence            88776 55556778999999998874

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=93.88  E-value=0.021  Score=46.19  Aligned_cols=92  Identities=12%  Similarity=0.034  Sum_probs=57.6

Q ss_pred             cCCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC---CCC--CCCCccEE
Q psy8015          23 GHSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA---SFG--DNGPYDAI   93 (165)
Q Consensus        23 ~~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~---~~~--~~~~fD~I   93 (165)
                      ..+++++||-. +  |.|..++.+++.. .+|++++.+++..+.++  ++|.+.  ++..+..+   ...  ....+|++
T Consensus       160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~--~~Ga~~--~~~~~~~~~~~~~~~~~~~g~D~v  235 (362)
T 2c0c_A          160 GLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLK--SLGCDR--PINYKTEPVGTVLKQEYPEGVDVV  235 (362)
T ss_dssp             CCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH--HTTCSE--EEETTTSCHHHHHHHHCTTCEEEE
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH--HcCCcE--EEecCChhHHHHHHHhcCCCCCEE
Confidence            45789999877 2  3455566666544 48999999998887775  345432  12211100   000  12469998


Q ss_pred             EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +-+.+. ...+...+.|+++|+++..
T Consensus       236 id~~g~-~~~~~~~~~l~~~G~iv~~  260 (362)
T 2c0c_A          236 YESVGG-AMFDLAVDALATKGRLIVI  260 (362)
T ss_dssp             EECSCT-HHHHHHHHHEEEEEEEEEC
T ss_pred             EECCCH-HHHHHHHHHHhcCCEEEEE
Confidence            876554 3445678999999998874

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=93.76  E-value=0.014  Score=47.09  Aligned_cols=93  Identities=13%  Similarity=0.028  Sum_probs=56.9

Q ss_pred             cCCCCCeEEEEcccc---HHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC---CCC--CCCCccEE
Q psy8015          23 GHSKRLDCLALTSNT---KQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA---SFG--DNGPYDAI   93 (165)
Q Consensus        23 ~~~~~~~vLei~GsG---~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~---~~~--~~~~fD~I   93 (165)
                      ..+++++||-..|+|   ..++.+++.. .+|++++.+++-.+.++  ++|.+.  ++..+..+   ...  ....+|++
T Consensus       164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~--~lGa~~--~~~~~~~~~~~~~~~~~~~g~Dvv  239 (353)
T 4dup_A          164 GLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACE--RLGAKR--GINYRSEDFAAVIKAETGQGVDII  239 (353)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH--HHTCSE--EEETTTSCHHHHHHHHHSSCEEEE
T ss_pred             CCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--hcCCCE--EEeCCchHHHHHHHHHhCCCceEE
Confidence            347899998653444   4455555543 58999999999888775  234332  12111110   000  02469988


Q ss_pred             EEcCCCCCchHHHHhccccCcEEEEEe
Q psy8015          94 HVGAAYPRYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~LkpgG~lvi~~  120 (165)
                      +-+.+.+ ..+...+.|+++|+++..-
T Consensus       240 id~~g~~-~~~~~~~~l~~~G~iv~~g  265 (353)
T 4dup_A          240 LDMIGAA-YFERNIASLAKDGCLSIIA  265 (353)
T ss_dssp             EESCCGG-GHHHHHHTEEEEEEEEECC
T ss_pred             EECCCHH-HHHHHHHHhccCCEEEEEE
Confidence            8765543 4556779999999987743

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=93.69  E-value=0.086  Score=41.69  Aligned_cols=91  Identities=11%  Similarity=-0.070  Sum_probs=54.2

Q ss_pred             cCCCCCeEEEEcccc---HHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC-CCCCCCCccEEEEcC
Q psy8015          23 GHSKRLDCLALTSNT---KQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA-SFGDNGPYDAIHVGA   97 (165)
Q Consensus        23 ~~~~~~~vLei~GsG---~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~-~~~~~~~fD~I~i~~   97 (165)
                      ..+++++||=..|+|   ..+..+|+.. .+|++++.+++ .+.++  ++|.+.  ++.-+..+ .......+|++|-..
T Consensus       149 ~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~-~~~~~--~lGa~~--~i~~~~~~~~~~~~~g~D~v~d~~  223 (321)
T 3tqh_A          149 EVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRN-HAFLK--ALGAEQ--CINYHEEDFLLAISTPVDAVIDLV  223 (321)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHH-HHHHH--HHTCSE--EEETTTSCHHHHCCSCEEEEEESS
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccch-HHHHH--HcCCCE--EEeCCCcchhhhhccCCCEEEECC
Confidence            457899998543355   4455555544 48999985444 55553  445542  22221111 001124699887765


Q ss_pred             CCCCchHHHHhccccCcEEEEE
Q psy8015          98 AYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        98 ~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ..+.. +...+.|+++|+++..
T Consensus       224 g~~~~-~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          224 GGDVG-IQSIDCLKETGCIVSV  244 (321)
T ss_dssp             CHHHH-HHHGGGEEEEEEEEEC
T ss_pred             CcHHH-HHHHHhccCCCEEEEe
Confidence            54444 6778999999998874

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=93.66  E-value=0.015  Score=48.60  Aligned_cols=92  Identities=8%  Similarity=-0.014  Sum_probs=57.9

Q ss_pred             cCCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC----------------
Q psy8015          23 GHSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA----------------   82 (165)
Q Consensus        23 ~~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~----------------   82 (165)
                      ..+++++||=. +  |.|..+..+|+.. .+|++++.+++-++.++  ++|.+.+  +.-...+                
T Consensus       225 ~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~--~lGa~~v--i~~~~~d~~~~~~~~~~~~~~~~  300 (456)
T 3krt_A          225 GMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICR--AMGAEAI--IDRNAEGYRFWKDENTQDPKEWK  300 (456)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH--HHTCCEE--EETTTTTCCSEEETTEECHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHH--hhCCcEE--EecCcCcccccccccccchHHHH
Confidence            34789999866 4  3456666777655 48999999998888774  3454321  1111000                


Q ss_pred             -------CCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          83 -------SFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        83 -------~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                             .......+|++|-..+. ...+...+.|++||+++..
T Consensus       301 ~~~~~i~~~t~g~g~Dvvid~~G~-~~~~~~~~~l~~~G~iv~~  343 (456)
T 3krt_A          301 RFGKRIRELTGGEDIDIVFEHPGR-ETFGASVFVTRKGGTITTC  343 (456)
T ss_dssp             HHHHHHHHHHTSCCEEEEEECSCH-HHHHHHHHHEEEEEEEEES
T ss_pred             HHHHHHHHHhCCCCCcEEEEcCCc-hhHHHHHHHhhCCcEEEEE
Confidence                   00112479988765544 4445667999999998874

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=93.50  E-value=0.04  Score=43.48  Aligned_cols=53  Identities=23%  Similarity=0.272  Sum_probs=37.7

Q ss_pred             CCCeEEEEccCCCCCC--CCCCccEEEEcCCCCCc--------------------------hHHHHhccccCcEEEEEec
Q psy8015          70 PDHDYDLIADGRASFG--DNGPYDAIHVGAAYPRY--------------------------PEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        70 ~~nV~~~~gD~~~~~~--~~~~fD~I~i~~~~~~~--------------------------p~~l~~~LkpgG~lvi~~~  121 (165)
                      +.++++++||+.+.+.  +.++||+|+.+......                          -.++.+.|||||.+++.++
T Consensus        19 ~~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~   98 (297)
T 2zig_A           19 FGVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG   98 (297)
T ss_dssp             --CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence            4568999999876332  34689999998765311                          0145689999999999887


Q ss_pred             C
Q psy8015         122 D  122 (165)
Q Consensus       122 ~  122 (165)
                      .
T Consensus        99 d   99 (297)
T 2zig_A           99 D   99 (297)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=93.47  E-value=0.025  Score=45.94  Aligned_cols=89  Identities=7%  Similarity=-0.045  Sum_probs=56.9

Q ss_pred             CCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC------CCCCCCCccEEE
Q psy8015          25 SKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA------SFGDNGPYDAIH   94 (165)
Q Consensus        25 ~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~------~~~~~~~fD~I~   94 (165)
                      +++++||=. +  +.|..+..+|+.. .+|+++. +++-.+.++  ++|.+.  ++.-+..+      ... .+.+|++|
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~--~lGa~~--vi~~~~~~~~~~v~~~t-~g~~d~v~  236 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAK--SRGAEE--VFDYRAPNLAQTIRTYT-KNNLRYAL  236 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHH--HTTCSE--EEETTSTTHHHHHHHHT-TTCCCEEE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHH--HcCCcE--EEECCCchHHHHHHHHc-cCCccEEE
Confidence            688999988 5  3678888888765 4788885 777776664  456532  22211110      011 23599988


Q ss_pred             EcCCCCCchHHHHhcc-ccCcEEEEE
Q psy8015          95 VGAAYPRYPEIFIHHL-KSGGRLVIP  119 (165)
Q Consensus        95 i~~~~~~~p~~l~~~L-kpgG~lvi~  119 (165)
                      -..+.+...+..++.| ++||+++..
T Consensus       237 d~~g~~~~~~~~~~~l~~~~G~iv~~  262 (371)
T 3gqv_A          237 DCITNVESTTFCFAAIGRAGGHYVSL  262 (371)
T ss_dssp             ESSCSHHHHHHHHHHSCTTCEEEEES
T ss_pred             ECCCchHHHHHHHHHhhcCCCEEEEE
Confidence            7655545556667888 699998764

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=93.29  E-value=0.11  Score=41.25  Aligned_cols=67  Identities=9%  Similarity=-0.116  Sum_probs=47.0

Q ss_pred             CeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC-CCCCccEEEEcCC
Q psy8015          28 LDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG-DNGPYDAIHVGAA   98 (165)
Q Consensus        28 ~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~-~~~~fD~I~i~~~   98 (165)
                      .+|+|+ ||.|-++.-|-+.. .-|.++|+++.+.+.-+.. +   +-+++.+|..+... +....|+++-+..
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N-~---~~~~~~~DI~~i~~~~~~~~D~l~ggpP   70 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESN-H---SAKLIKGDISKISSDEFPKCDGIIGGPP   70 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHH-C---CSEEEESCGGGCCGGGSCCCSEEECCCC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHH-C---CCCcccCChhhCCHhhCCcccEEEecCC
Confidence            479999 99999998777654 4678999999988865422 1   13677888765322 2356898766543

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=93.27  E-value=0.11  Score=41.22  Aligned_cols=70  Identities=16%  Similarity=0.110  Sum_probs=49.9

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCCc---EEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC----CCCCccEEEEc
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIPN---SFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG----DNGPYDAIHVG   96 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~~---V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~----~~~~fD~I~i~   96 (165)
                      ....+++|+ ||.|.++.-+.+..-+   |+++|+++...+.-+..   .++..++.+|..+...    +.+.+|+++.+
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N---~~~~~~~~~DI~~i~~~~i~~~~~~Dll~gg   90 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVR---HQGKIMYVGDVRSVTQKHIQEWGPFDLVIGG   90 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHH---TTTCEEEECCGGGCCHHHHHHTCCCSEEEEC
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHh---CCCCceeCCChHHccHHHhcccCCcCEEEec
Confidence            356789999 9999999888776533   69999999988765422   2345678888765322    12469988886


Q ss_pred             C
Q psy8015          97 A   97 (165)
Q Consensus        97 ~   97 (165)
                      .
T Consensus        91 p   91 (295)
T 2qrv_A           91 S   91 (295)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=93.25  E-value=0.052  Score=43.90  Aligned_cols=69  Identities=7%  Similarity=-0.135  Sum_probs=48.2

Q ss_pred             CeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC---CCCccEEEEcCCC
Q psy8015          28 LDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD---NGPYDAIHVGAAY   99 (165)
Q Consensus        28 ~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~---~~~fD~I~i~~~~   99 (165)
                      -+++|+ ||.|-++.-+.+..   ..|.++|+++...+.-+..   ..+..++.+|..+..+.   ...+|+++.+..+
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N---~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPC   79 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHN---FPETNLLNRNIQQLTPQVIKKWNVDTILMSPPC   79 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH---CTTSCEECCCGGGCCHHHHHHTTCCEEEECCCC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHh---CCCCceeccccccCCHHHhccCCCCEEEecCCC
Confidence            479999 99999998887654   4588999999998866421   22345667887553221   1268988876544

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=93.18  E-value=0.049  Score=43.20  Aligned_cols=92  Identities=4%  Similarity=-0.070  Sum_probs=55.5

Q ss_pred             CCCCC-eEEEE-c--cccHHHHHHhcc-CCcEEEEeCCHHHHHhcccccCCCCCeE-EEEccC--CCCCCCCCCccEEEE
Q psy8015          24 HSKRL-DCLAL-T--SNTKQSTTLPTF-IPNSFNINVYYYLSGGPLSSTIDPDHDY-DLIADG--RASFGDNGPYDAIHV   95 (165)
Q Consensus        24 ~~~~~-~vLei-~--GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~~~~~~~~nV~-~~~gD~--~~~~~~~~~fD~I~i   95 (165)
                      .++++ +||=. +  |.|..+..+++. ..+|++++.+++-.+.++  ++|.+.+- ....|.  ..... .+.+|++|-
T Consensus       147 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~--~lGa~~v~~~~~~~~~~~~~~~-~~~~d~vid  223 (330)
T 1tt7_A          147 LSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLK--QLGASEVISREDVYDGTLKALS-KQQWQGAVD  223 (330)
T ss_dssp             CCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHH--HHTCSEEEEHHHHCSSCCCSSC-CCCEEEEEE
T ss_pred             cCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--HcCCcEEEECCCchHHHHHHhh-cCCccEEEE
Confidence            46675 88877 5  345555666654 358999999987777664  34543321 101111  11111 246998877


Q ss_pred             cCCCCCchHHHHhccccCcEEEEE
Q psy8015          96 GAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        96 ~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      .... ...+...+.|++||+++..
T Consensus       224 ~~g~-~~~~~~~~~l~~~G~iv~~  246 (330)
T 1tt7_A          224 PVGG-KQLASLLSKIQYGGSVAVS  246 (330)
T ss_dssp             SCCT-HHHHHHHTTEEEEEEEEEC
T ss_pred             CCcH-HHHHHHHHhhcCCCEEEEE
Confidence            6554 3445667999999998864

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=93.15  E-value=0.079  Score=45.04  Aligned_cols=73  Identities=8%  Similarity=-0.102  Sum_probs=49.4

Q ss_pred             CCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC-----------------CC
Q psy8015          27 RLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG-----------------DN   87 (165)
Q Consensus        27 ~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~-----------------~~   87 (165)
                      .-+++|+ ||.|.++.-+.+.. ..|.++|+++...+.-+...-..++..++.+|..+...                 ..
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~~~  167 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQHI  167 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTSCHHHHHHHHHHHS
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhhhhccccccchhhHHhhhhhcC
Confidence            3589999 99999998887765 45899999999887654221112345667788754211                 12


Q ss_pred             CCccEEEEcCCC
Q psy8015          88 GPYDAIHVGAAY   99 (165)
Q Consensus        88 ~~fD~I~i~~~~   99 (165)
                      ..+|+++.+..+
T Consensus       168 ~~~Dvl~gGpPC  179 (482)
T 3me5_A          168 PEHDVLLAGFPC  179 (482)
T ss_dssp             CCCSEEEEECCC
T ss_pred             CCCCEEEecCCC
Confidence            468988876544

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=92.98  E-value=0.019  Score=46.37  Aligned_cols=92  Identities=10%  Similarity=-0.073  Sum_probs=56.5

Q ss_pred             cCCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC---C---CCCCCCccE
Q psy8015          23 GHSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA---S---FGDNGPYDA   92 (165)
Q Consensus        23 ~~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~---~---~~~~~~fD~   92 (165)
                      ..+++++||-. +  |.|..++.+++.. .+|++++.+++..+.++  ++|.+.  ++..+-.+   .   ......+|+
T Consensus       167 ~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~--~~ga~~--~~d~~~~~~~~~~~~~~~~~~~D~  242 (351)
T 1yb5_A          167 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL--QNGAHE--VFNHREVNYIDKIKKYVGEKGIDI  242 (351)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH--HTTCSE--EEETTSTTHHHHHHHHHCTTCEEE
T ss_pred             CCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHH--HcCCCE--EEeCCCchHHHHHHHHcCCCCcEE
Confidence            34789999988 5  3455555555543 58999999998888664  334332  12111100   0   001236999


Q ss_pred             EEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          93 IHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        93 I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ++-+.+.+. .+...+.|+++|+++..
T Consensus       243 vi~~~G~~~-~~~~~~~l~~~G~iv~~  268 (351)
T 1yb5_A          243 IIEMLANVN-LSKDLSLLSHGGRVIVV  268 (351)
T ss_dssp             EEESCHHHH-HHHHHHHEEEEEEEEEC
T ss_pred             EEECCChHH-HHHHHHhccCCCEEEEE
Confidence            987655432 34567999999998764

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=92.96  E-value=0.053  Score=43.44  Aligned_cols=54  Identities=13%  Similarity=0.245  Sum_probs=39.3

Q ss_pred             CCCeEEEEccCCCCCC--CCCCccEEEEcCCCCCc--------------------hHHHHhccccCcEEEEEecCC
Q psy8015          70 PDHDYDLIADGRASFG--DNGPYDAIHVGAAYPRY--------------------PEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        70 ~~nV~~~~gD~~~~~~--~~~~fD~I~i~~~~~~~--------------------p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      .++..+++||+.+.+.  +.++||+|+++.....-                    ..++.+.|+|||.+++.+++.
T Consensus        12 ~~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~   87 (323)
T 1boo_A           12 TSNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA   87 (323)
T ss_dssp             CSSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             cCCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence            3468999999865322  34689999999765321                    124679999999999988754

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=92.95  E-value=0.033  Score=44.71  Aligned_cols=90  Identities=9%  Similarity=-0.029  Sum_probs=51.6

Q ss_pred             cCCCCCeEEEE-c--cccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC--CCC--CCCCCccEE
Q psy8015          23 GHSKRLDCLAL-T--SNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR--ASF--GDNGPYDAI   93 (165)
Q Consensus        23 ~~~~~~~vLei-~--GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~--~~~--~~~~~fD~I   93 (165)
                      ..+++++||=. +  +.|..+..+|+..  .+|++++ +++-.+.++   +|.+.+  +..+..  +..  ...+.+|+|
T Consensus       139 ~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~---~ga~~~--~~~~~~~~~~~~~~~~~g~Dvv  212 (349)
T 4a27_A          139 NLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK---DSVTHL--FDRNADYVQEVKRISAEGVDIV  212 (349)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG---GGSSEE--EETTSCHHHHHHHHCTTCEEEE
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH---cCCcEE--EcCCccHHHHHHHhcCCCceEE
Confidence            34789999977 5  3467777777764  4789888 554444443   454332  222110  000  012469988


Q ss_pred             EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      |-....+.. +...+.|+++|+++..
T Consensus       213 ~d~~g~~~~-~~~~~~l~~~G~~v~~  237 (349)
T 4a27_A          213 LDCLCGDNT-GKGLSLLKPLGTYILY  237 (349)
T ss_dssp             EEECC--------CTTEEEEEEEEEE
T ss_pred             EECCCchhH-HHHHHHhhcCCEEEEE
Confidence            876555554 6677999999999875

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=92.77  E-value=0.03  Score=44.89  Aligned_cols=90  Identities=8%  Similarity=-0.084  Sum_probs=56.2

Q ss_pred             CCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC--CC---CCCCCCccEEE
Q psy8015          24 HSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR--AS---FGDNGPYDAIH   94 (165)
Q Consensus        24 ~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~--~~---~~~~~~fD~I~   94 (165)
                      .+++++||-+ +  |.|..++.+++.. .+|+++ .+++-.+.++  ++|.+.   +..+..  +.   ......+|++|
T Consensus       148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~--~lGa~~---i~~~~~~~~~~~~~~~~~g~D~vi  221 (343)
T 3gaz_A          148 VQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVR--DLGATP---IDASREPEDYAAEHTAGQGFDLVY  221 (343)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHH--HHTSEE---EETTSCHHHHHHHHHTTSCEEEEE
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHH--HcCCCE---eccCCCHHHHHHHHhcCCCceEEE
Confidence            4789999977 3  3356666666654 489999 8888777764  345432   221110  00   01124699887


Q ss_pred             EcCCCCCchHHHHhccccCcEEEEEe
Q psy8015          95 VGAAYPRYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        95 i~~~~~~~p~~l~~~LkpgG~lvi~~  120 (165)
                      -..+. ...+...+.|+++|+++..-
T Consensus       222 d~~g~-~~~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          222 DTLGG-PVLDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             ESSCT-HHHHHHHHHEEEEEEEEESC
T ss_pred             ECCCc-HHHHHHHHHHhcCCeEEEEc
Confidence            66553 34456679999999988743

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=92.70  E-value=0.093  Score=42.18  Aligned_cols=92  Identities=11%  Similarity=0.069  Sum_probs=52.3

Q ss_pred             cCCCCCeEEEE-c--cccHHHHHHhccCC-cEEE-EeCCHH---HHHhcccccCCCCCeEEEEc------cCCCCCCCCC
Q psy8015          23 GHSKRLDCLAL-T--SNTKQSTTLPTFIP-NSFN-INVYYY---LSGGPLSSTIDPDHDYDLIA------DGRASFGDNG   88 (165)
Q Consensus        23 ~~~~~~~vLei-~--GsG~~t~~la~~~~-~V~a-iD~~~~---~~~~A~~~~~~~~nV~~~~g------D~~~~~~~~~   88 (165)
                      ..+++++||=. +  |.|..+..+|+..+ +|++ ++.+++   ..+.+  +++|.+.+  +..      +..+.....+
T Consensus       164 ~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~--~~lGa~~v--i~~~~~~~~~~~~~~~~~~  239 (357)
T 1zsy_A          164 QLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRL--KSLGAEHV--ITEEELRRPEMKNFFKDMP  239 (357)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHH--HHTTCSEE--EEHHHHHSGGGGGTTSSSC
T ss_pred             ccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHH--HhcCCcEE--EecCcchHHHHHHHHhCCC
Confidence            45789999987 5  45666777777543 5554 455443   23333  34565432  221      1111111112


Q ss_pred             CccEEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          89 PYDAIHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        89 ~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      .+|+||-....+.. ....+.|++||+++..
T Consensus       240 ~~Dvvid~~g~~~~-~~~~~~l~~~G~iv~~  269 (357)
T 1zsy_A          240 QPRLALNCVGGKSS-TELLRQLARGGTMVTY  269 (357)
T ss_dssp             CCSEEEESSCHHHH-HHHHTTSCTTCEEEEC
T ss_pred             CceEEEECCCcHHH-HHHHHhhCCCCEEEEE
Confidence            49988765543333 3567999999998874

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=92.27  E-value=0.62  Score=37.98  Aligned_cols=101  Identities=15%  Similarity=0.049  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhc---ccccCCCCC--eEEEEccCCCCCCC
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGP---LSSTIDPDH--DYDLIADGRASFGD   86 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A---~~~~~~~~n--V~~~~gD~~~~~~~   86 (165)
                      +=..+++.+.....+.+||-+ -+-|.++..|+..  .++.+.-| .+.+.|   +++..++++  |++...  .+..  
T Consensus        25 ~d~~ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~--~~~~~~ds-~~~~~~~~~n~~~~~~~~~~~~~~~~--~~~~--   97 (375)
T 4dcm_A           25 ADEYLLQQLDDTEIRGPVLILNDAFGALSCALAEH--KPYSIGDS-YISELATRENLRLNGIDESSVKFLDS--TADY--   97 (375)
T ss_dssp             HHHHHHHTTTTCCCCSCEEEECCSSSHHHHHTGGG--CCEEEESC-HHHHHHHHHHHHHTTCCGGGSEEEET--TSCC--
T ss_pred             HHHHHHHhhhhccCCCCEEEECCCCCHHHHhhccC--CceEEEhH-HHHHHHHHHHHHHcCCCccceEeccc--cccc--
Confidence            334566665443356789999 9999999999853  56777433 333333   355556653  665543  2222  


Q ss_pred             CCCccEEEEcCCCCC-----chHHHHhccccCcEEEEEe
Q psy8015          87 NGPYDAIHVGAAYPR-----YPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        87 ~~~fD~I~i~~~~~~-----~p~~l~~~LkpgG~lvi~~  120 (165)
                      .+.||.+++.-..+.     ....+...|+||+++++.-
T Consensus        98 ~~~~~~v~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g  136 (375)
T 4dcm_A           98 PQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGA  136 (375)
T ss_dssp             CSSCSEEEEECCSCHHHHHHHHHHHHTTCCTTSEEEEEE
T ss_pred             ccCCCEEEEEcCCCHHHHHHHHHHHHhhCCCCCEEEEEe
Confidence            357999998655431     1235778899999987643

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=92.17  E-value=0.11  Score=35.87  Aligned_cols=88  Identities=7%  Similarity=-0.011  Sum_probs=54.0

Q ss_pred             CeEEEEccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--CC--CCCCccEEEEcCCC
Q psy8015          28 LDCLALTSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--FG--DNGPYDAIHVGAAY   99 (165)
Q Consensus        28 ~~vLei~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~~--~~~~fD~I~i~~~~   99 (165)
                      ++++= +|.|.++..+++.    ..+|+.+|.+++.++.++..     ++.++.+|..+.  +.  ....+|.+++....
T Consensus         7 ~~v~I-~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~-----~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~   80 (141)
T 3llv_A            7 YEYIV-IGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE-----GFDAVIADPTDESFYRSLDLEGVSAVLITGSD   80 (141)
T ss_dssp             CSEEE-ECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-----TCEEEECCTTCHHHHHHSCCTTCSEEEECCSC
T ss_pred             CEEEE-ECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC-----CCcEEECCCCCHHHHHhCCcccCCEEEEecCC
Confidence            45543 5778888777664    45899999999988766421     367888987642  11  12468999886553


Q ss_pred             CCchH---HHHhccccCcEEEEEecC
Q psy8015         100 PRYPE---IFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus       100 ~~~p~---~l~~~LkpgG~lvi~~~~  122 (165)
                      .....   ...+.+. ..++++-...
T Consensus        81 ~~~n~~~~~~a~~~~-~~~iia~~~~  105 (141)
T 3llv_A           81 DEFNLKILKALRSVS-DVYAIVRVSS  105 (141)
T ss_dssp             HHHHHHHHHHHHHHC-CCCEEEEESC
T ss_pred             HHHHHHHHHHHHHhC-CceEEEEEcC
Confidence            21111   2334455 5666665543

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=92.01  E-value=0.1  Score=42.00  Aligned_cols=73  Identities=3%  Similarity=-0.017  Sum_probs=49.5

Q ss_pred             CCCeEEEE-ccccHHHHHHhccC---CcE-EEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC---CCCccEEEEcC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFI---PNS-FNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD---NGPYDAIHVGA   97 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~---~~V-~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~---~~~fD~I~i~~   97 (165)
                      ..-+++|+ ||.|.++.-+.+..   ..| .++|+++.+.+.-+.. ++  +. ++.+|..+..+.   ...+|+++.+.
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N-~~--~~-~~~~DI~~~~~~~i~~~~~Dil~ggp   84 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKN-FK--EE-VQVKNLDSISIKQIESLNCNTWFMSP   84 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHH-HC--CC-CBCCCTTTCCHHHHHHTCCCEEEECC
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHH-CC--CC-cccCChhhcCHHHhccCCCCEEEecC
Confidence            45689999 99999998887765   456 7999999998876421 11  11 456776543221   12689998876


Q ss_pred             CCCCc
Q psy8015          98 AYPRY  102 (165)
Q Consensus        98 ~~~~~  102 (165)
                      .+...
T Consensus        85 PCQ~f   89 (327)
T 3qv2_A           85 PCQPY   89 (327)
T ss_dssp             CCTTC
T ss_pred             CccCc
Confidence            65444

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=91.99  E-value=0.38  Score=39.75  Aligned_cols=92  Identities=8%  Similarity=-0.144  Sum_probs=56.8

Q ss_pred             cCCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC-----------------
Q psy8015          23 GHSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR-----------------   81 (165)
Q Consensus        23 ~~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~-----------------   81 (165)
                      ..+++++||=. +  |.|..++.+++.. .+|++++.+++-.+.++  ++|.+.+ +-..+..                 
T Consensus       217 ~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~--~lGa~~~-i~~~~~~~~~~~~~~~~~~~~~~~  293 (447)
T 4a0s_A          217 QMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVR--ALGCDLV-INRAELGITDDIADDPRRVVETGR  293 (447)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH--HTTCCCE-EEHHHHTCCTTGGGCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--hcCCCEE-Eecccccccccccccccccchhhh
Confidence            34789999855 3  2345556666654 48999999999888774  4455432 1111100                 


Q ss_pred             ---C---CCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          82 ---A---SFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        82 ---~---~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                         +   ... ...+|++|-..+.. ..+...+.|++||+++..
T Consensus       294 ~~~~~v~~~~-g~g~Dvvid~~G~~-~~~~~~~~l~~~G~iv~~  335 (447)
T 4a0s_A          294 KLAKLVVEKA-GREPDIVFEHTGRV-TFGLSVIVARRGGTVVTC  335 (447)
T ss_dssp             HHHHHHHHHH-SSCCSEEEECSCHH-HHHHHHHHSCTTCEEEES
T ss_pred             HHHHHHHHHh-CCCceEEEECCCch-HHHHHHHHHhcCCEEEEE
Confidence               0   000 24699888765543 345667899999998874

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=91.94  E-value=0.047  Score=44.04  Aligned_cols=91  Identities=10%  Similarity=-0.044  Sum_probs=55.9

Q ss_pred             cCCCCCeEEEE--ccccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC-----CCCCCCCCccEE
Q psy8015          23 GHSKRLDCLAL--TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR-----ASFGDNGPYDAI   93 (165)
Q Consensus        23 ~~~~~~~vLei--~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~-----~~~~~~~~fD~I   93 (165)
                      ..+++++||=.  .|.|..+..+|+..  .+|+++|.+++-.+.++  ++|.+.+  +.-+..     ........+|++
T Consensus       183 ~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~--~lGa~~v--i~~~~~~~~~v~~~~~g~g~Dvv  258 (359)
T 1h2b_A          183 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE--RLGADHV--VDARRDPVKQVMELTRGRGVNVA  258 (359)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH--HTTCSEE--EETTSCHHHHHHHHTTTCCEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH--HhCCCEE--EeccchHHHHHHHHhCCCCCcEE
Confidence            45789999998  44566667777644  48999999999888775  4554322  221100     011112369998


Q ss_pred             EEcCCCCC--chHHHHhccccCcEEEEE
Q psy8015          94 HVGAAYPR--YPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~--~p~~l~~~LkpgG~lvi~  119 (165)
                      |-....+.  ..+...+.  ++|+++..
T Consensus       259 id~~G~~~~~~~~~~~~~--~~G~~v~~  284 (359)
T 1h2b_A          259 MDFVGSQATVDYTPYLLG--RMGRLIIV  284 (359)
T ss_dssp             EESSCCHHHHHHGGGGEE--EEEEEEEC
T ss_pred             EECCCCchHHHHHHHhhc--CCCEEEEE
Confidence            87655442  33333444  99998774

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=91.75  E-value=0.086  Score=46.08  Aligned_cols=95  Identities=12%  Similarity=-0.067  Sum_probs=61.1

Q ss_pred             CCCeEEEE-ccccHHHHHHhcc------------CC--cEEEEeC---CHHHHHhc-c-cc-----------cC------
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTF------------IP--NSFNINV---YYYLSGGP-L-SS-----------TI------   68 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~------------~~--~V~aiD~---~~~~~~~A-~-~~-----------~~------   68 (165)
                      +.-+|||+ -|+|+......+.            ..  +++++|.   +++-++.| + ..           ..      
T Consensus        66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (676)
T 3ps9_A           66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  145 (676)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred             CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence            34589999 9999877544332            11  5899998   66666533 1 00           00      


Q ss_pred             --------CCCCeEEEEccCCCCCCC-----CCCccEEEEcCCCCC-ch--------HHHHhccccCcEEEEEe
Q psy8015          69 --------DPDHDYDLIADGRASFGD-----NGPYDAIHVGAAYPR-YP--------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        69 --------~~~nV~~~~gD~~~~~~~-----~~~fD~I~i~~~~~~-~p--------~~l~~~LkpgG~lvi~~  120 (165)
                              +.-.+++..||+.+.++.     ...||++|.++-.+. -|        ..+.+.++|||++.-..
T Consensus       146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~  219 (676)
T 3ps9_A          146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT  219 (676)
T ss_dssp             EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC
T ss_pred             ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence                    112366788998654442     257999999985542 22        35788999999987643

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=91.52  E-value=0.062  Score=43.13  Aligned_cols=92  Identities=7%  Similarity=-0.049  Sum_probs=55.3

Q ss_pred             cCCCC--CeEEEE-c--cccHHHHHHhccC-C-cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC------CCCCCCC
Q psy8015          23 GHSKR--LDCLAL-T--SNTKQSTTLPTFI-P-NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA------SFGDNGP   89 (165)
Q Consensus        23 ~~~~~--~~vLei-~--GsG~~t~~la~~~-~-~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~------~~~~~~~   89 (165)
                      ..+++  ++||-. +  |.|..++.+++.. . +|++++.+++..+.++. .+|.+.  ++..+..+      .... +.
T Consensus       155 ~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~-~~g~~~--~~d~~~~~~~~~~~~~~~-~~  230 (357)
T 2zb4_A          155 HITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTS-ELGFDA--AINYKKDNVAEQLRESCP-AG  230 (357)
T ss_dssp             CCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH-TSCCSE--EEETTTSCHHHHHHHHCT-TC
T ss_pred             CCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH-HcCCce--EEecCchHHHHHHHHhcC-CC
Confidence            45788  898877 4  3344555555543 4 89999999887776641 245431  12111000      0011 26


Q ss_pred             ccEEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          90 YDAIHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        90 fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +|+++-+.+. ...+...+.|+++|+++..
T Consensus       231 ~d~vi~~~G~-~~~~~~~~~l~~~G~iv~~  259 (357)
T 2zb4_A          231 VDVYFDNVGG-NISDTVISQMNENSHIILC  259 (357)
T ss_dssp             EEEEEESCCH-HHHHHHHHTEEEEEEEEEC
T ss_pred             CCEEEECCCH-HHHHHHHHHhccCcEEEEE
Confidence            9998876653 3345677999999998864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.05  E-value=0.41  Score=34.37  Aligned_cols=89  Identities=9%  Similarity=-0.010  Sum_probs=54.3

Q ss_pred             CCeEEEEccccHHHHHHhc----c-CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--CC---CCCCccEEEEc
Q psy8015          27 RLDCLALTSNTKQSTTLPT----F-IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--FG---DNGPYDAIHVG   96 (165)
Q Consensus        27 ~~~vLei~GsG~~t~~la~----~-~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~~---~~~~fD~I~i~   96 (165)
                      +++|+= +|.|.++..+++    . ..+|+.+|.+++.++.++  ..   ++.++.+|..+.  +.   ....+|+|++.
T Consensus        39 ~~~v~I-iG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~--~~---g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~  112 (183)
T 3c85_A           39 HAQVLI-LGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHR--SE---GRNVISGDATDPDFWERILDTGHVKLVLLA  112 (183)
T ss_dssp             TCSEEE-ECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHH--HT---TCCEEECCTTCHHHHHTBCSCCCCCEEEEC
T ss_pred             CCcEEE-ECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHH--HC---CCCEEEcCCCCHHHHHhccCCCCCCEEEEe
Confidence            456653 588888766664    3 457999999998887654  22   355677876431  11   13468999985


Q ss_pred             CCCCCchH---HHHhccccCcEEEEEec
Q psy8015          97 AAYPRYPE---IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        97 ~~~~~~p~---~l~~~LkpgG~lvi~~~  121 (165)
                      ........   ...+.+.|+.++++...
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~  140 (183)
T 3c85_A          113 MPHHQGNQTALEQLQRRNYKGQIAAIAE  140 (183)
T ss_dssp             CSSHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred             CCChHHHHHHHHHHHHHCCCCEEEEEEC
Confidence            44322222   23455666677776544

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=91.04  E-value=0.52  Score=35.27  Aligned_cols=89  Identities=6%  Similarity=-0.127  Sum_probs=57.9

Q ss_pred             CCeEEEEccccHHHHHHhccCC---cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--C--CCCCCccEEEEcCCC
Q psy8015          27 RLDCLALTSNTKQSTTLPTFIP---NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--F--GDNGPYDAIHVGAAY   99 (165)
Q Consensus        27 ~~~vLei~GsG~~t~~la~~~~---~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~--~~~~~fD~I~i~~~~   99 (165)
                      .++++= +|.|.++..+++...   .|+.+|.+++.++.++      .++.++.+|+.+.  +  ......|.+++....
T Consensus         9 ~~~viI-~G~G~~G~~la~~L~~~g~v~vid~~~~~~~~~~------~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~   81 (234)
T 2aef_A            9 SRHVVI-CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR------SGANFVHGDPTRVSDLEKANVRGARAVIVDLES   81 (234)
T ss_dssp             -CEEEE-ESCCHHHHHHHHHSTTSEEEEEESCGGGHHHHHH------TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSC
T ss_pred             CCEEEE-ECCChHHHHHHHHHHhCCeEEEEECCHHHHHHHh------cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCC
Confidence            445542 688999988877542   2999999998877554      3578999998642  1  123578999986544


Q ss_pred             CCch---HHHHhccccCcEEEEEecC
Q psy8015         100 PRYP---EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus       100 ~~~p---~~l~~~LkpgG~lvi~~~~  122 (165)
                      ....   ....+.+.|+.++++-+.+
T Consensus        82 d~~n~~~~~~a~~~~~~~~iia~~~~  107 (234)
T 2aef_A           82 DSETIHCILGIRKIDESVRIIAEAER  107 (234)
T ss_dssp             HHHHHHHHHHHHHHCSSSEEEEECSS
T ss_pred             cHHHHHHHHHHHHHCCCCeEEEEECC
Confidence            3211   2345667787787776644

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=90.83  E-value=0.27  Score=40.81  Aligned_cols=83  Identities=2%  Similarity=-0.098  Sum_probs=57.4

Q ss_pred             ccccHHHHHHhccC----CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--C--CCCCCccEEEEcCCCCCch--
Q psy8015          34 TSNTKQSTTLPTFI----PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--F--GDNGPYDAIHVGAAYPRYP--  103 (165)
Q Consensus        34 ~GsG~~t~~la~~~----~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~--~~~~~fD~I~i~~~~~~~p--  103 (165)
                      ||.|.++..+++..    ..|+.+|.|++.++.++.  .   ++.++.||+.+.  +  ......|+|++.......-  
T Consensus        10 iG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~--~---g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~~   84 (413)
T 3l9w_A           10 AGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK--F---GMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQ   84 (413)
T ss_dssp             ECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH--T---TCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh--C---CCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHHH
Confidence            79999998888753    589999999999987752  2   356789998652  1  1235789998865443211  


Q ss_pred             -HHHHhccccCcEEEEEec
Q psy8015         104 -EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       104 -~~l~~~LkpgG~lvi~~~  121 (165)
                       -...+.+.|.-++++-..
T Consensus        85 i~~~ar~~~p~~~Iiara~  103 (413)
T 3l9w_A           85 LTEMVKEHFPHLQIIARAR  103 (413)
T ss_dssp             HHHHHHHHCTTCEEEEEES
T ss_pred             HHHHHHHhCCCCeEEEEEC
Confidence             134567778878777554

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=90.57  E-value=0.72  Score=32.24  Aligned_cols=92  Identities=5%  Similarity=-0.036  Sum_probs=54.9

Q ss_pred             CCCCeEEEEccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--CC--CCCCccEEEEc
Q psy8015          25 SKRLDCLALTSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--FG--DNGPYDAIHVG   96 (165)
Q Consensus        25 ~~~~~vLei~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~~--~~~~fD~I~i~   96 (165)
                      .++++|+= +|.|.++..+++.    ..+|+.+|.+++.++.++. ..   ++.++.+|....  +.  ....+|+|++.
T Consensus        17 ~~~~~v~I-iG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~-~~---g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~   91 (155)
T 2g1u_A           17 QKSKYIVI-FGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS-EF---SGFTVVGDAAEFETLKECGMEKADMVFAF   91 (155)
T ss_dssp             CCCCEEEE-ECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT-TC---CSEEEESCTTSHHHHHTTTGGGCSEEEEC
T ss_pred             cCCCcEEE-ECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh-cC---CCcEEEecCCCHHHHHHcCcccCCEEEEE
Confidence            46778764 5778888766654    3589999999987765431 22   345677775321  11  12468999987


Q ss_pred             CCCCCchHHH---HhccccCcEEEEEec
Q psy8015          97 AAYPRYPEIF---IHHLKSGGRLVIPIG  121 (165)
Q Consensus        97 ~~~~~~p~~l---~~~LkpgG~lvi~~~  121 (165)
                      ...+.....+   .+.+.+..+++....
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~  119 (155)
T 2g1u_A           92 TNDDSTNFFISMNARYMFNVENVIARVY  119 (155)
T ss_dssp             SSCHHHHHHHHHHHHHTSCCSEEEEECS
T ss_pred             eCCcHHHHHHHHHHHHHCCCCeEEEEEC
Confidence            6554333333   333445556665544

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=90.35  E-value=1.3  Score=33.52  Aligned_cols=74  Identities=14%  Similarity=0.031  Sum_probs=45.6

Q ss_pred             CCCeEEEEccccH------HHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCC----------CC
Q psy8015          26 KRLDCLALTSNTK------QSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFG----------DN   87 (165)
Q Consensus        26 ~~~~vLei~GsG~------~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~----------~~   87 (165)
                      .++++|=.-|+|.      ++..|++...+|+.++.+++..+.++  .+..+..++.++..|..+.-.          ..
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQV   85 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence            3556665533333      34455555678999999887665553  333444479999999764210          01


Q ss_pred             CCccEEEEcCCC
Q psy8015          88 GPYDAIHVGAAY   99 (165)
Q Consensus        88 ~~fD~I~i~~~~   99 (165)
                      ++.|.++.+++.
T Consensus        86 g~id~li~~Ag~   97 (266)
T 3oig_A           86 GVIHGIAHCIAF   97 (266)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCeeEEEEcccc
Confidence            478999888764

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=89.83  E-value=0.03  Score=44.89  Aligned_cols=88  Identities=9%  Similarity=-0.041  Sum_probs=52.8

Q ss_pred             CCC-CeEEEE-ccccHHHH---HHhcc-CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC-------CCCcc
Q psy8015          25 SKR-LDCLAL-TSNTKQST---TLPTF-IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD-------NGPYD   91 (165)
Q Consensus        25 ~~~-~~vLei-~GsG~~t~---~la~~-~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~-------~~~fD   91 (165)
                      .++ ++|| | .|+|.++.   .+++. ..+|++++.+++-.+.++  ++|.+.  ++..+.. .+.+       ...+|
T Consensus       162 ~~g~~~vl-i~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~--~~Ga~~--~~~~~~~-~~~~~v~~~~~~~g~D  235 (349)
T 3pi7_A          162 QEGEKAFV-MTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLK--DIGAAH--VLNEKAP-DFEATLREVMKAEQPR  235 (349)
T ss_dssp             HHCCSEEE-ESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHH--HHTCSE--EEETTST-THHHHHHHHHHHHCCC
T ss_pred             hCCCCEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--HcCCCE--EEECCcH-HHHHHHHHHhcCCCCc
Confidence            355 4554 5 56665554   44443 358999999998888775  345432  2222111 1100       13699


Q ss_pred             EEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          92 AIHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        92 ~I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +++-....+.. +...+.|+++|+++..
T Consensus       236 ~vid~~g~~~~-~~~~~~l~~~G~iv~~  262 (349)
T 3pi7_A          236 IFLDAVTGPLA-SAIFNAMPKRARWIIY  262 (349)
T ss_dssp             EEEESSCHHHH-HHHHHHSCTTCEEEEC
T ss_pred             EEEECCCChhH-HHHHhhhcCCCEEEEE
Confidence            88776554333 5677999999998875

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=89.48  E-value=0.19  Score=40.80  Aligned_cols=91  Identities=8%  Similarity=-0.043  Sum_probs=50.8

Q ss_pred             CCeEEEEccccHHH---HHHhcc-CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC-
Q psy8015          27 RLDCLALTSNTKQS---TTLPTF-IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR-  101 (165)
Q Consensus        27 ~~~vLei~GsG~~t---~~la~~-~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~-  101 (165)
                      +++|+=+ |.|-.+   +.+++. ..+|+.+|++++.++.++.  .+...+.....+..........+|+|+-....+. 
T Consensus       167 ~~~VlVi-GaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~  243 (361)
T 1pjc_A          167 PGKVVIL-GGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLET--LFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  243 (361)
T ss_dssp             CCEEEEE-CCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH--HHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCEEEEE-CCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH--hhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCC
Confidence            4788877 335444   333333 3489999999988877641  1111232222211000001135899877654432 


Q ss_pred             -----chHHHHhccccCcEEEEEe
Q psy8015         102 -----YPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus       102 -----~p~~l~~~LkpgG~lvi~~  120 (165)
                           +.+...+.++|||+++-..
T Consensus       244 ~~~~li~~~~~~~~~~g~~ivdv~  267 (361)
T 1pjc_A          244 RAPILVPASLVEQMRTGSVIVDVA  267 (361)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             CCCeecCHHHHhhCCCCCEEEEEe
Confidence                 3566778999999877643

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=89.18  E-value=2.4  Score=33.04  Aligned_cols=85  Identities=5%  Similarity=-0.180  Sum_probs=54.6

Q ss_pred             CCCeEEEEccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEE-ccCCCCCCCCCCccEEEEcCCCC
Q psy8015          26 KRLDCLALTSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLI-ADGRASFGDNGPYDAIHVGAAYP  100 (165)
Q Consensus        26 ~~~~vLei~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~-gD~~~~~~~~~~fD~I~i~~~~~  100 (165)
                      ++++|+=+ |.|..+..+++.    ..+|+.+|.+++-.+.++  ..|   +++.. .+..+.   ....|+|++....+
T Consensus       154 ~g~~v~Ii-G~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~--~~g---~~~~~~~~l~~~---l~~aDvVi~~~p~~  224 (293)
T 3d4o_A          154 HGANVAVL-GLGRVGMSVARKFAALGAKVKVGARESDLLARIA--EMG---MEPFHISKAAQE---LRDVDVCINTIPAL  224 (293)
T ss_dssp             TTCEEEEE-CCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH--HTT---SEEEEGGGHHHH---TTTCSEEEECCSSC
T ss_pred             CCCEEEEE-eeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH--HCC---CeecChhhHHHH---hcCCCEEEECCChH
Confidence            57888777 667777666653    348999999987655442  233   23322 121111   24689999987666


Q ss_pred             CchHHHHhccccCcEEEEE
Q psy8015         101 RYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus       101 ~~p~~l~~~LkpgG~lvi~  119 (165)
                      .+.+..++.+|||+.++-.
T Consensus       225 ~i~~~~l~~mk~~~~lin~  243 (293)
T 3d4o_A          225 VVTANVLAEMPSHTFVIDL  243 (293)
T ss_dssp             CBCHHHHHHSCTTCEEEEC
T ss_pred             HhCHHHHHhcCCCCEEEEe
Confidence            6666777899998876543

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=88.28  E-value=0.41  Score=40.79  Aligned_cols=84  Identities=7%  Similarity=-0.172  Sum_probs=54.9

Q ss_pred             CCCCeEEEEccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015          25 SKRLDCLALTSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP  100 (165)
Q Consensus        25 ~~~~~vLei~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~  100 (165)
                      .+|++|+=+ |.|.++..+++.    ..+|+++|.++...+.|+  ..|.   ++  .+..+.   ....|+|+......
T Consensus       272 l~GktV~Ii-G~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~--~~Ga---~~--~~l~e~---l~~aDvVi~atgt~  340 (494)
T 3ce6_A          272 IGGKKVLIC-GYGDVGKGCAEAMKGQGARVSVTEIDPINALQAM--MEGF---DV--VTVEEA---IGDADIVVTATGNK  340 (494)
T ss_dssp             CTTCEEEEE-CCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH--HTTC---EE--CCHHHH---GGGCSEEEECSSSS
T ss_pred             CCcCEEEEE-ccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--HcCC---EE--ecHHHH---HhCCCEEEECCCCH
Confidence            578888777 556666555543    348999999998877764  2243   21  121111   13589999886655


Q ss_pred             Cch-HHHHhccccCcEEEEE
Q psy8015         101 RYP-EIFIHHLKSGGRLVIP  119 (165)
Q Consensus       101 ~~p-~~l~~~LkpgG~lvi~  119 (165)
                      ++. ...++.+|+||+++..
T Consensus       341 ~~i~~~~l~~mk~ggilvnv  360 (494)
T 3ce6_A          341 DIIMLEHIKAMKDHAILGNI  360 (494)
T ss_dssp             CSBCHHHHHHSCTTCEEEEC
T ss_pred             HHHHHHHHHhcCCCcEEEEe
Confidence            544 4778999999997653

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=88.27  E-value=0.39  Score=43.08  Aligned_cols=91  Identities=11%  Similarity=0.050  Sum_probs=53.0

Q ss_pred             CCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEE-EEccCCC---CCCCCCCccEEEE
Q psy8015          24 HSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYD-LIADGRA---SFGDNGPYDAIHV   95 (165)
Q Consensus        24 ~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~-~~gD~~~---~~~~~~~fD~I~i   95 (165)
                      .++|++||=. +  |.|..+..+|+.. .+|++++.+++ .+.  ++ +|.+.+-- ...|..+   .......+|+|+-
T Consensus       343 l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~k-~~~--l~-lga~~v~~~~~~~~~~~i~~~t~g~GvDvVld  418 (795)
T 3slk_A          343 LRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASEDK-WQA--VE-LSREHLASSRTCDFEQQFLGATGGRGVDVVLN  418 (795)
T ss_dssp             CCTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGGG-GGG--SC-SCGGGEECSSSSTHHHHHHHHSCSSCCSEEEE
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChHH-hhh--hh-cChhheeecCChhHHHHHHHHcCCCCeEEEEE
Confidence            4689999977 3  3466677777765 48999986552 222  22 44332110 0001000   0111246998887


Q ss_pred             cCCCCCchHHHHhccccCcEEEEE
Q psy8015          96 GAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        96 ~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ..+.+ ..+..++.|+|+|+++..
T Consensus       419 ~~gg~-~~~~~l~~l~~~Gr~v~i  441 (795)
T 3slk_A          419 SLAGE-FADASLRMLPRGGRFLEL  441 (795)
T ss_dssp             CCCTT-TTHHHHTSCTTCEEEEEC
T ss_pred             CCCcH-HHHHHHHHhcCCCEEEEe
Confidence            65544 446677999999998874

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=87.64  E-value=0.084  Score=42.40  Aligned_cols=94  Identities=6%  Similarity=-0.089  Sum_probs=52.1

Q ss_pred             cCCCC-CeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHH----HHhcccccCCCCCeEEEE----ccCCCCCC----
Q psy8015          23 GHSKR-LDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYL----SGGPLSSTIDPDHDYDLI----ADGRASFG----   85 (165)
Q Consensus        23 ~~~~~-~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~----~~~A~~~~~~~~nV~~~~----gD~~~~~~----   85 (165)
                      ..+++ ++||=. +  |.|..+..+|+.. .+|+++..+++-    .+.+  +++|.+.+--..    .|..+...    
T Consensus       163 ~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~--~~lGa~~vi~~~~~~~~~~~~~i~~~t~  240 (364)
T 1gu7_A          163 KLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASL--KELGATQVITEDQNNSREFGPTIKEWIK  240 (364)
T ss_dssp             CCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHH--HHHTCSEEEEHHHHHCGGGHHHHHHHHH
T ss_pred             ccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHH--HhcCCeEEEecCccchHHHHHHHHHHhh
Confidence            34688 999876 3  3445566666653 478888654432    2333  345654321111    11111110    


Q ss_pred             -CCCCccEEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          86 -DNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        86 -~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                       ....+|+||-....+... ...+.|+++|+++..
T Consensus       241 ~~~~g~Dvvid~~G~~~~~-~~~~~l~~~G~~v~~  274 (364)
T 1gu7_A          241 QSGGEAKLALNCVGGKSST-GIARKLNNNGLMLTY  274 (364)
T ss_dssp             HHTCCEEEEEESSCHHHHH-HHHHTSCTTCEEEEC
T ss_pred             ccCCCceEEEECCCchhHH-HHHHHhccCCEEEEe
Confidence             123699888765544444 567999999998874

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=87.43  E-value=1.5  Score=33.22  Aligned_cols=65  Identities=8%  Similarity=-0.147  Sum_probs=45.6

Q ss_pred             CeEEEEccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015          28 LDCLALTSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP  100 (165)
Q Consensus        28 ~~vLei~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~  100 (165)
                      ++||= ||+|+++..+++.    ..+|+++++++.-.+..+  .   .+++++.+|..+ +. ...+|+|+..++..
T Consensus         6 ~~ilV-tGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--~---~~~~~~~~D~~d-~~-~~~~d~vi~~a~~~   74 (286)
T 3ius_A            6 GTLLS-FGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIR--A---SGAEPLLWPGEE-PS-LDGVTHLLISTAPD   74 (286)
T ss_dssp             CEEEE-ETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH--H---TTEEEEESSSSC-CC-CTTCCEEEECCCCB
T ss_pred             CcEEE-ECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh--h---CCCeEEEecccc-cc-cCCCCEEEECCCcc
Confidence            35443 6779999887764    358999999886544321  1   368999999866 33 56789999887654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=87.22  E-value=1.1  Score=33.09  Aligned_cols=83  Identities=11%  Similarity=-0.036  Sum_probs=53.1

Q ss_pred             ccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--CC--CCCCccEEEEcCCCCCch--
Q psy8015          34 TSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--FG--DNGPYDAIHVGAAYPRYP--  103 (165)
Q Consensus        34 ~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~~--~~~~fD~I~i~~~~~~~p--  103 (165)
                      ||.|.++..+++.    ..+|+.+|.+++.++..+. .   .++.++.+|+.+.  +.  ....+|.+++........  
T Consensus         6 iG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~-~---~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~   81 (218)
T 3l4b_C            6 IGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAK-K---LKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVNLF   81 (218)
T ss_dssp             ECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-H---SSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHHHH
T ss_pred             ECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH-H---cCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHHHH
Confidence            7999988887764    3589999999998875431 1   1467899998642  11  135789998865443221  


Q ss_pred             -HHHHhccccCcEEEEEe
Q psy8015         104 -EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus       104 -~~l~~~LkpgG~lvi~~  120 (165)
                       ....+.+.|..++++-.
T Consensus        82 ~~~~a~~~~~~~~iia~~   99 (218)
T 3l4b_C           82 IAQLVMKDFGVKRVVSLV   99 (218)
T ss_dssp             HHHHHHHTSCCCEEEECC
T ss_pred             HHHHHHHHcCCCeEEEEE
Confidence             12334455666666543

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=86.86  E-value=1.4  Score=29.54  Aligned_cols=88  Identities=8%  Similarity=-0.006  Sum_probs=52.5

Q ss_pred             CeEEEEccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--C--CCCCCccEEEEcCCC
Q psy8015          28 LDCLALTSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--F--GDNGPYDAIHVGAAY   99 (165)
Q Consensus        28 ~~vLei~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~--~~~~~fD~I~i~~~~   99 (165)
                      ++|+= +|.|.++..+++.    ..+|+.+|.+++.++..+.+ .   ++.++.+|..+.  +  .....+|.|++....
T Consensus         5 m~i~I-iG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~-~---~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~   79 (140)
T 1lss_A            5 MYIII-AGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE-I---DALVINGDCTKIKTLEDAGIEDADMYIAVTGK   79 (140)
T ss_dssp             CEEEE-ECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-C---SSEEEESCTTSHHHHHHTTTTTCSEEEECCSC
T ss_pred             CEEEE-ECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh-c---CcEEEEcCCCCHHHHHHcCcccCCEEEEeeCC
Confidence            45542 6889988777654    35799999999877654311 1   356677776421  1  113468999997544


Q ss_pred             CCch---HHHHhccccCcEEEEEec
Q psy8015         100 PRYP---EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       100 ~~~p---~~l~~~LkpgG~lvi~~~  121 (165)
                      ....   ....+.+.++ ++++...
T Consensus        80 ~~~~~~~~~~~~~~~~~-~ii~~~~  103 (140)
T 1lss_A           80 EEVNLMSSLLAKSYGIN-KTIARIS  103 (140)
T ss_dssp             HHHHHHHHHHHHHTTCC-CEEEECS
T ss_pred             chHHHHHHHHHHHcCCC-EEEEEec
Confidence            3221   1334556664 6555443

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=86.42  E-value=2.3  Score=39.30  Aligned_cols=71  Identities=10%  Similarity=0.043  Sum_probs=47.9

Q ss_pred             CCCeEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCC------------C----CCCC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR------------A----SFGD   86 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~------------~----~~~~   86 (165)
                      +.-+++|+ ||.|-++.-|.+.+-  .|.++|+++.+.+.-+..   ..+..++.+|..            .    .++.
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N---~p~~~~~~~DI~~l~~~~~~~di~~~~~~~lp~  615 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLN---NPGSTVFTEDCNILLKLVMAGETTNSRGQRLPQ  615 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHH---CTTSEEECSCHHHHHHHHHHTCSBCTTCCBCCC
T ss_pred             CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHh---CCCCccccccHHHHhhhccchhhhhhhhhhccc
Confidence            34589999 999999988876553  578999999998865422   234555555531            1    1333


Q ss_pred             CCCccEEEEcCCC
Q psy8015          87 NGPYDAIHVGAAY   99 (165)
Q Consensus        87 ~~~fD~I~i~~~~   99 (165)
                      .+.+|+|+.+..+
T Consensus       616 ~~~vDll~GGpPC  628 (1002)
T 3swr_A          616 KGDVEMLCGGPPC  628 (1002)
T ss_dssp             TTTCSEEEECCCC
T ss_pred             CCCeeEEEEcCCC
Confidence            4578988876543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=86.16  E-value=1.2  Score=30.85  Aligned_cols=91  Identities=11%  Similarity=-0.064  Sum_probs=56.4

Q ss_pred             CeEEEEccccHHHHHHhcc----CCcEEEEeCC-HHHHHhcc-cccCCCCCeEEEEccCCCC--CC--CCCCccEEEEcC
Q psy8015          28 LDCLALTSNTKQSTTLPTF----IPNSFNINVY-YYLSGGPL-SSTIDPDHDYDLIADGRAS--FG--DNGPYDAIHVGA   97 (165)
Q Consensus        28 ~~vLei~GsG~~t~~la~~----~~~V~aiD~~-~~~~~~A~-~~~~~~~nV~~~~gD~~~~--~~--~~~~fD~I~i~~   97 (165)
                      ++++ |+|.|.++..+++.    ..+|+.+|.+ ++..+..+ ..   ..++.++.||+.+.  +.  .....|.|++..
T Consensus         4 ~~vl-I~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~---~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~   79 (153)
T 1id1_A            4 DHFI-VCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL---GDNADVIPGDSNDSSVLKKAGIDRCRAILALS   79 (153)
T ss_dssp             SCEE-EECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH---CTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred             CcEE-EECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh---cCCCeEEEcCCCCHHHHHHcChhhCCEEEEec
Confidence            4443 27889999877764    3589999998 45443332 11   12578999998642  11  235789998865


Q ss_pred             CCCCch---HHHHhccccCcEEEEEecC
Q psy8015          98 AYPRYP---EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        98 ~~~~~p---~~l~~~LkpgG~lvi~~~~  122 (165)
                      ......   ....+.+.|..++++-...
T Consensus        80 ~~d~~n~~~~~~a~~~~~~~~ii~~~~~  107 (153)
T 1id1_A           80 DNDADNAFVVLSAKDMSSDVKTVLAVSD  107 (153)
T ss_dssp             SCHHHHHHHHHHHHHHTSSSCEEEECSS
T ss_pred             CChHHHHHHHHHHHHHCCCCEEEEEECC
Confidence            543222   2345666777788776654

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=86.16  E-value=2.5  Score=33.00  Aligned_cols=85  Identities=5%  Similarity=-0.163  Sum_probs=54.2

Q ss_pred             CCCeEEEEccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEE-ccCCCCCCCCCCccEEEEcCCCC
Q psy8015          26 KRLDCLALTSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLI-ADGRASFGDNGPYDAIHVGAAYP  100 (165)
Q Consensus        26 ~~~~vLei~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~-gD~~~~~~~~~~fD~I~i~~~~~  100 (165)
                      ++++|+=| |.|..+..+++.    ..+|+.+|.+++..+.+.  ..|   ++... .+..+.   ....|+|+.....+
T Consensus       156 ~g~~v~Ii-G~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~--~~g---~~~~~~~~l~~~---l~~aDvVi~~~p~~  226 (300)
T 2rir_A          156 HGSQVAVL-GLGRTGMTIARTFAALGANVKVGARSSAHLARIT--EMG---LVPFHTDELKEH---VKDIDICINTIPSM  226 (300)
T ss_dssp             TTSEEEEE-CCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH--HTT---CEEEEGGGHHHH---STTCSEEEECCSSC
T ss_pred             CCCEEEEE-cccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH--HCC---CeEEchhhHHHH---hhCCCEEEECCChh
Confidence            57888877 667676665553    348999999987654332  223   23222 121111   24689999987776


Q ss_pred             CchHHHHhccccCcEEEEE
Q psy8015         101 RYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus       101 ~~p~~l~~~LkpgG~lvi~  119 (165)
                      -+.+..++.+|||+.++-.
T Consensus       227 ~i~~~~~~~mk~g~~lin~  245 (300)
T 2rir_A          227 ILNQTVLSSMTPKTLILDL  245 (300)
T ss_dssp             CBCHHHHTTSCTTCEEEEC
T ss_pred             hhCHHHHHhCCCCCEEEEE
Confidence            6667778899998765543

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=86.13  E-value=0.57  Score=37.97  Aligned_cols=90  Identities=11%  Similarity=-0.022  Sum_probs=50.5

Q ss_pred             CCCeEEEEccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC-CCCccEEEEcCCCC
Q psy8015          26 KRLDCLALTSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD-NGPYDAIHVGAAYP  100 (165)
Q Consensus        26 ~~~~vLei~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~-~~~fD~I~i~~~~~  100 (165)
                      ++++|+=+ |.|..+..+++.    ..+|+++|.+++.++.++ +..+.. +.....+.. .+.+ ...+|+|+.+...+
T Consensus       165 ~~~~V~Vi-GaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~-~~~g~~-~~~~~~~~~-~l~~~~~~~DvVi~~~g~~  240 (369)
T 2eez_A          165 APASVVIL-GGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLD-DVFGGR-VITLTATEA-NIKKSVQHADLLIGAVLVP  240 (369)
T ss_dssp             CCCEEEEE-CCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HHTTTS-EEEEECCHH-HHHHHHHHCSEEEECCC--
T ss_pred             CCCEEEEE-CCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-HhcCce-EEEecCCHH-HHHHHHhCCCEEEECCCCC
Confidence            35777766 446555444432    358999999998777653 112322 222221111 0100 13589998876543


Q ss_pred             C------chHHHHhccccCcEEEEE
Q psy8015         101 R------YPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus       101 ~------~p~~l~~~LkpgG~lvi~  119 (165)
                      .      +.+...+.+|+||+++..
T Consensus       241 ~~~~~~li~~~~l~~mk~gg~iV~v  265 (369)
T 2eez_A          241 GAKAPKLVTRDMLSLMKEGAVIVDV  265 (369)
T ss_dssp             -----CCSCHHHHTTSCTTCEEEEC
T ss_pred             ccccchhHHHHHHHhhcCCCEEEEE
Confidence            2      356778999999987654

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=85.10  E-value=1.6  Score=34.43  Aligned_cols=83  Identities=7%  Similarity=-0.104  Sum_probs=55.9

Q ss_pred             ccccHHHHHHhccC---CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--C--CCCCCccEEEEcCCCCCc---h
Q psy8015          34 TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--F--GDNGPYDAIHVGAAYPRY---P  103 (165)
Q Consensus        34 ~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~--~~~~~fD~I~i~~~~~~~---p  103 (165)
                      ||.|..+..+++..   +.|+.+|.|++.++ ++.     .++.++.||+.+.  +  ......|.+++....+..   -
T Consensus       121 ~G~G~~g~~l~~~L~~~g~v~vid~~~~~~~-~~~-----~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~n~~~  194 (336)
T 1lnq_A          121 CGWSESTLECLRELRGSEVFVLAEDENVRKK-VLR-----SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHC  194 (336)
T ss_dssp             ESCCHHHHHHHTTGGGSCEEEEESCGGGHHH-HHH-----TTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHHHHHH
T ss_pred             ECCcHHHHHHHHHHHhCCcEEEEeCChhhhh-HHh-----CCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHHHHHH
Confidence            79999998888753   23999999999988 542     3578999998642  1  123578998885443211   1


Q ss_pred             HHHHhccccCcEEEEEecC
Q psy8015         104 EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus       104 ~~l~~~LkpgG~lvi~~~~  122 (165)
                      -...+.+.|..++++-..+
T Consensus       195 ~~~ar~~~~~~~iiar~~~  213 (336)
T 1lnq_A          195 ILGIRKIDESVRIIAEAER  213 (336)
T ss_dssp             HHHHHTTCTTSEEEEECSS
T ss_pred             HHHHHHHCCCCeEEEEECC
Confidence            1345677777777776543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=84.72  E-value=0.69  Score=37.67  Aligned_cols=91  Identities=9%  Similarity=-0.006  Sum_probs=52.0

Q ss_pred             CCCeEEEEccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC-CCCccEEEEcCCCC
Q psy8015          26 KRLDCLALTSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD-NGPYDAIHVGAAYP  100 (165)
Q Consensus        26 ~~~~vLei~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~-~~~fD~I~i~~~~~  100 (165)
                      ++++|+=+ |.|..+..+++.    ..+|+++|.+++.++.++. ..|.. +.....+.. .+.+ ...+|+|+.....+
T Consensus       167 ~g~~V~Vi-G~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~-~~g~~-~~~~~~~~~-~l~~~l~~aDvVi~~~~~p  242 (377)
T 2vhw_A          167 EPADVVVI-GAGTAGYNAARIANGMGATVTVLDINIDKLRQLDA-EFCGR-IHTRYSSAY-ELEGAVKRADLVIGAVLVP  242 (377)
T ss_dssp             CCCEEEEE-CCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-HTTTS-SEEEECCHH-HHHHHHHHCSEEEECCCCT
T ss_pred             CCCEEEEE-CCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-hcCCe-eEeccCCHH-HHHHHHcCCCEEEECCCcC
Confidence            56788777 446555444443    3489999999988776641 12321 222111110 0100 13579998865433


Q ss_pred             C------chHHHHhccccCcEEEEEe
Q psy8015         101 R------YPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus       101 ~------~p~~l~~~LkpgG~lvi~~  120 (165)
                      .      +.++.++.+||||+++-.-
T Consensus       243 ~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          243 GAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             TSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             CCCCcceecHHHHhcCCCCcEEEEEe
Confidence            2      2567789999999876543

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=84.64  E-value=2.8  Score=34.48  Aligned_cols=88  Identities=14%  Similarity=0.078  Sum_probs=50.8

Q ss_pred             CCCeEEEEccccHHHHHHhc----cCCcEEEEeCCHHHHHhcccccCCCCCeEEEE----ccCCCCCC------------
Q psy8015          26 KRLDCLALTSNTKQSTTLPT----FIPNSFNINVYYYLSGGPLSSTIDPDHDYDLI----ADGRASFG------------   85 (165)
Q Consensus        26 ~~~~vLei~GsG~~t~~la~----~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~----gD~~~~~~------------   85 (165)
                      ++.+|+=+ |.|..+..+++    +..+|+.+|++++.++.++  .+|.   +++.    ++...++.            
T Consensus       183 ~~~kV~Vi-G~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~--~lGa---~~~~l~~~~~~~~gya~~~~~~~~~~~~  256 (381)
T 3p2y_A          183 KPASALVL-GVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVR--SVGA---QWLDLGIDAAGEGGYARELSEAERAQQQ  256 (381)
T ss_dssp             CCCEEEEE-SCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHH--HTTC---EECCCC-------------CHHHHHHHH
T ss_pred             CCCEEEEE-CchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--HcCC---eEEeccccccccccchhhhhHHHHhhhH
Confidence            56788877 55555444443    3458999999998877664  1232   1211    11111111            


Q ss_pred             -----CCCCccEEEEcCCCC------CchHHHHhccccCcEEEEE
Q psy8015          86 -----DNGPYDAIHVGAAYP------RYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        86 -----~~~~fD~I~i~~~~~------~~p~~l~~~LkpgG~lvi~  119 (165)
                           .....|+|+.....+      -+.++..+.+|||..+|-.
T Consensus       257 ~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDv  301 (381)
T 3p2y_A          257 QALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDL  301 (381)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEET
T ss_pred             HHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEE
Confidence                 125789998764222      2457889999998876654

>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}

Probab=84.41  E-value=0.41  Score=37.86  Aligned_cols=39  Identities=28%  Similarity=0.481  Sum_probs=28.0

Q ss_pred             CCCCCC-CCccEEEEcCCCCC----ch---H----------HHHhccccCcEEEEEe
Q psy8015          82 ASFGDN-GPYDAIHVGAAYPR----YP---E----------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        82 ~~~~~~-~~fD~I~i~~~~~~----~p---~----------~l~~~LkpgG~lvi~~  120 (165)
                      -++|.. +.||.||++...+.    +-   |          ...+.|+|||.+++-.
T Consensus       203 lG~P~~~grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~a  259 (324)
T 3trk_A          203 LGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRA  259 (324)
T ss_dssp             GCCCGGGCCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred             cCCCCcCCceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEe
Confidence            355654 89999999976652    21   1          2368999999999863

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=84.22  E-value=0.73  Score=36.79  Aligned_cols=51  Identities=14%  Similarity=0.032  Sum_probs=36.5

Q ss_pred             eEEE-EccCCCCC--CCCCCccEEEEcCCCCCc-----------------hHHHHhccccCcEEEEEecCC
Q psy8015          73 DYDL-IADGRASF--GDNGPYDAIHVGAAYPRY-----------------PEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        73 V~~~-~gD~~~~~--~~~~~fD~I~i~~~~~~~-----------------p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      ..++ +||+.+.+  .+.++||+||++.....-                 ...+.+.|+|||.+++.++..
T Consensus        39 ~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~  109 (319)
T 1eg2_A           39 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ  109 (319)
T ss_dssp             EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred             ceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcc
Confidence            5677 99986422  124689999999766421                 124578999999999988754

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=84.12  E-value=0.48  Score=36.42  Aligned_cols=49  Identities=12%  Similarity=0.035  Sum_probs=33.5

Q ss_pred             eEEEEccCCCCC--CCCCCccEEEEcCCCCCc--------------------hHHHHhccccCcEEEEEec
Q psy8015          73 DYDLIADGRASF--GDNGPYDAIHVGAAYPRY--------------------PEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        73 V~~~~gD~~~~~--~~~~~fD~I~i~~~~~~~--------------------p~~l~~~LkpgG~lvi~~~  121 (165)
                      .+++++|+.+.+  .+.++||+||++.....-                    .+.+.+.|+|||.+++.+.
T Consensus         5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~   75 (260)
T 1g60_A            5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT   75 (260)
T ss_dssp             SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcC
Confidence            467888875422  123689999998765321                    1245789999999999853

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=83.47  E-value=3.3  Score=34.27  Aligned_cols=92  Identities=9%  Similarity=-0.023  Sum_probs=50.2

Q ss_pred             CCCeEEEEccccHHHHHH---hcc-CCcEEEEeCCHHHHHhcccccCCCCCeE-----EEEccCCCCCC----C------
Q psy8015          26 KRLDCLALTSNTKQSTTL---PTF-IPNSFNINVYYYLSGGPLSSTIDPDHDY-----DLIADGRASFG----D------   86 (165)
Q Consensus        26 ~~~~vLei~GsG~~t~~l---a~~-~~~V~aiD~~~~~~~~A~~~~~~~~nV~-----~~~gD~~~~~~----~------   86 (165)
                      ++.+|+=+ |.|..+..+   ++. ..+|+.+|++++.++.++  .+|.+-++     +..++....+.    +      
T Consensus       189 ~~~kV~Vi-G~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~--~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~  265 (405)
T 4dio_A          189 PAAKIFVM-GAGVAGLQAIATARRLGAVVSATDVRPAAKEQVA--SLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQ  265 (405)
T ss_dssp             CCCEEEEE-CCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHH--HTTCEECCCCC-----------------CHHHHHH
T ss_pred             CCCEEEEE-CCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH--HcCCceeecccccccccccccchhhhcchhhhhhh
Confidence            56788877 445444333   332 358999999998877664  12321000     01111111111    0      


Q ss_pred             -------CCCccEEEEcCCCC------CchHHHHhccccCcEEEEEe
Q psy8015          87 -------NGPYDAIHVGAAYP------RYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        87 -------~~~fD~I~i~~~~~------~~p~~l~~~LkpgG~lvi~~  120 (165)
                             ....|+|+.....+      -+.++..+.+|||..+|-..
T Consensus       266 ~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA  312 (405)
T 4dio_A          266 AALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA  312 (405)
T ss_dssp             HHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             HhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence                   13679888763222      25678899999988776543

>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}

Probab=82.99  E-value=0.67  Score=40.25  Aligned_cols=40  Identities=20%  Similarity=0.423  Sum_probs=29.5

Q ss_pred             CCCCCCCCCccEEEEcCCCC----Cch---H----------HHHhccccCcEEEEEe
Q psy8015          81 RASFGDNGPYDAIHVGAAYP----RYP---E----------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        81 ~~~~~~~~~fD~I~i~~~~~----~~p---~----------~l~~~LkpgG~lvi~~  120 (165)
                      ..++|..++||.||++...+    ++-   |          ...+.|+|||.+++-.
T Consensus       213 ~lG~p~~~ryDlvfvn~~t~yr~HHyqQCeDHa~~l~ml~~~al~~l~pGGt~v~~~  269 (670)
T 4gua_A          213 AFGFPPQARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKS  269 (670)
T ss_dssp             GGCCCCCCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCCCCCCcccEEEEecCCCcccchHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEE
Confidence            34777778999999997655    221   1          2468999999998864

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=82.07  E-value=3  Score=30.31  Aligned_cols=60  Identities=10%  Similarity=-0.166  Sum_probs=41.8

Q ss_pred             ccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC-C--C-CCCCCccEEEEcCCCC
Q psy8015          34 TSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA-S--F-GDNGPYDAIHVGAAYP  100 (165)
Q Consensus        34 ~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~-~--~-~~~~~fD~I~i~~~~~  100 (165)
                      -|+|+++..+++.    ..+|++++++++-.+     .  ..+++++.+|..+ .  + .....+|+|+..++..
T Consensus         7 GatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~-----~--~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~   74 (219)
T 3dqp_A            7 GSTGRVGKSLLKSLSTTDYQIYAGARKVEQVP-----Q--YNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSG   74 (219)
T ss_dssp             STTSHHHHHHHHHHTTSSCEEEEEESSGGGSC-----C--CTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCT
T ss_pred             CCCCHHHHHHHHHHHHCCCEEEEEECCccchh-----h--cCCceEEEecccCCHHHHHHHHcCCCEEEECCcCC
Confidence            5589888777764    358999999875332     1  2579999999865 1  1 1134689999887654

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=82.01  E-value=2.5  Score=34.83  Aligned_cols=70  Identities=7%  Similarity=-0.055  Sum_probs=42.3

Q ss_pred             EecCCchHHHHHHHHHH-----hcC-CC-CCeEEEE-ccccHHHHHHhcc-------C--CcEEEEeCCHHHHHhcc--c
Q psy8015           5 FVSGSVSGAVAKYVTYL-----SGH-SK-RLDCLAL-TSNTKQSTTLPTF-------I--PNSFNINVYYYLSGGPL--S   65 (165)
Q Consensus         5 ~~~~~~~~~~~~~l~~l-----~~~-~~-~~~vLei-~GsG~~t~~la~~-------~--~~V~aiD~~~~~~~~A~--~   65 (165)
                      +||++++...+.++...     ... .| .-+++|+ .|+|.++.-+.+.       .  -+++-||+|+.+.+.=+  +
T Consensus        52 ~Tapeis~~FGe~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L  131 (387)
T 1zkd_A           52 TTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL  131 (387)
T ss_dssp             CSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred             eCCCchHHHHHHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHh
Confidence            45666666655444321     111 23 3469999 9999998655432       1  27899999998887433  3


Q ss_pred             ccCCCCCeEEE
Q psy8015          66 STIDPDHDYDL   76 (165)
Q Consensus        66 ~~~~~~nV~~~   76 (165)
                      +..  ++|++.
T Consensus       132 ~~~--~~v~W~  140 (387)
T 1zkd_A          132 AGI--RNIHWH  140 (387)
T ss_dssp             TTC--SSEEEE
T ss_pred             cCC--CCeEEe
Confidence            332  256655

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=80.43  E-value=6.3  Score=28.23  Aligned_cols=81  Identities=10%  Similarity=-0.136  Sum_probs=51.8

Q ss_pred             ccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC-CCCCccEEEEcCCCCCc------
Q psy8015          34 TSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG-DNGPYDAIHVGAAYPRY------  102 (165)
Q Consensus        34 ~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~-~~~~fD~I~i~~~~~~~------  102 (165)
                      -|||+++..+++.    ..+|++++++++-.+...      .+++++.+|..+... ....+|+|+..++...-      
T Consensus         7 GatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~------~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~~   80 (221)
T 3ew7_A            7 GATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH------KDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEKHV   80 (221)
T ss_dssp             TTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC------SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTSHH
T ss_pred             cCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc------CCCeEEeccccChhhhhhcCCCEEEECCcCCccccchHH
Confidence            4589888777764    368999999987654321      578999999764321 12468999988765421      


Q ss_pred             --hHHHHhcccc--CcEEEEEe
Q psy8015         103 --PEIFIHHLKS--GGRLVIPI  120 (165)
Q Consensus       103 --p~~l~~~Lkp--gG~lvi~~  120 (165)
                        ...+.+.++.  .++++...
T Consensus        81 ~~~~~l~~a~~~~~~~~~v~~S  102 (221)
T 3ew7_A           81 TSLDHLISVLNGTVSPRLLVVG  102 (221)
T ss_dssp             HHHHHHHHHHCSCCSSEEEEEC
T ss_pred             HHHHHHHHHHHhcCCceEEEEe
Confidence              1244555554  36766643

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=80.31  E-value=6.9  Score=26.62  Aligned_cols=99  Identities=12%  Similarity=-0.008  Sum_probs=55.2

Q ss_pred             CchHHHHHHHHHHhcCCCCCeEEEEccccHHHHHHhccC----CcEEEEeCCHHHHHhcccccCCCCCeEEEEc-cCCCC
Q psy8015           9 SVSGAVAKYVTYLSGHSKRLDCLALTSNTKQSTTLPTFI----PNSFNINVYYYLSGGPLSSTIDPDHDYDLIA-DGRAS   83 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLei~GsG~~t~~la~~~----~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g-D~~~~   83 (165)
                      |++....+.+...    .+++|+=+ |+|.++..+++..    .+|+.+|++++..+... +.++   +..... +..+.
T Consensus         7 sv~~~a~~~~~~~----~~~~v~ii-G~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a-~~~~---~~~~~~~~~~~~   77 (144)
T 3oj0_A            7 SIPSIVYDIVRKN----GGNKILLV-GNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFA-EKYE---YEYVLINDIDSL   77 (144)
T ss_dssp             SHHHHHHHHHHHH----CCCEEEEE-CCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHH-HHHT---CEEEECSCHHHH
T ss_pred             cHHHHHHHHHHhc----cCCEEEEE-CCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHH-HHhC---CceEeecCHHHH
Confidence            4455554554443    37888877 7788887777653    35999999998776421 1222   222221 11111


Q ss_pred             CCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEec
Q psy8015          84 FGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        84 ~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~  121 (165)
                         ...+|+|+.....++..-. .+.|++|+.+ +.++
T Consensus        78 ---~~~~Divi~at~~~~~~~~-~~~l~~g~~v-id~~  110 (144)
T 3oj0_A           78 ---IKNNDVIITATSSKTPIVE-ERSLMPGKLF-IDLG  110 (144)
T ss_dssp             ---HHTCSEEEECSCCSSCSBC-GGGCCTTCEE-EECC
T ss_pred             ---hcCCCEEEEeCCCCCcEee-HHHcCCCCEE-EEcc
Confidence               1358999887655432211 2678886655 4444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	165
d1r18a_	223	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	4e-10
d1i1na_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	3e-09
d1jg1a_	215	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	9e-09
d1vbfa_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	2e-07
d1dl5a1	213	c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methylt	7e-07

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 223

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 54.5 bits (130), Expect = 4e-10
 Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 79  DGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIG-DTKQQMLTIYDKFHNG 137
           DGR  +  N PY+AIHVGAA P  P   I+ L SGGRL++P+G D   Q +  YDK  NG
Sbjct: 149 DGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQQYDKDANG 208

Query: 138 TIDIQHWGVV 147
            +++     V
Sbjct: 209 KVEMTRLMGV 218

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 3e-09
 Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 71  DHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGD-TKQQMLT 129
                ++ DGR  + +  PYDAIHVGAA P  P+  I  LK GGRL++P+G     QML 
Sbjct: 132 GRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLE 191

Query: 130 IYDKFHNGTIDIQHWGVVQVGLLYDVKAGYS 160
            YDK  +G+I ++    V    L D +  +S
Sbjct: 192 QYDKLQDGSIKMKPLMGVIYVPLTDKEKQWS 222

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 215

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 50.2 bits (119), Expect = 9e-09
 Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 78  ADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTK-QQMLTIYDKFHN 136
            DG   F    PYD I V A  P+ PE  I  LK GG+L+IP+G     Q L    K  +
Sbjct: 134 GDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRKTKD 193

Query: 137 GTIDIQHWGVVQVGLL 152
           G     H GV  V L+
Sbjct: 194 GIKIKNHGGVAFVPLI 209

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 47.1 bits (111), Expect = 2e-07
 Identities = 20/81 (24%), Positives = 32/81 (39%)

Query: 72  HDYDLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIY 131
           +   ++ DG   + +  PYD + V A  P         LK GG +++PIG  + Q L   
Sbjct: 117 NIKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVGRVQKLYKV 176

Query: 132 DKFHNGTIDIQHWGVVQVGLL 152
            K  N         V+   + 
Sbjct: 177 IKKGNSPSLENLGEVMFGRIG 197

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 213

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.0 bits (105), Expect = 7e-07
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 70  PDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGD--TKQQM 127
            ++   +  DG     +  PYD I V       PE +   LK GGR+++PI    +++Q 
Sbjct: 125 IENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQP 184

Query: 128 LTIYDKFHNGTIDIQHWGVVQVGL 151
             ++ K     +         +  
Sbjct: 185 AFLFKKKDPYLVGNYKLETRFITA 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	165
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	100.0
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	100.0
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.97
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.97
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.96
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.84
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.83
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.8
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.74
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.74
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.73
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.73
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.71
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.69
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.69
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.68
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.68
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.68
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.65
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.62
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.61
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.61
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.61
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.61
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.6
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.59
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.59
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.59
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.59
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.58
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.57
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.57
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.56
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.54
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.53
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.53
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.52
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.5
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.49
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.48
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.47
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.45
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.44
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.44
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.42
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.4
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.39
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.36
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.35
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.34
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.33
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.33
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.32
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.32
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.31
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.31
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.3
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.28
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.28
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.28
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.23
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.19
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.13
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.11
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.11
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.08
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.05
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.04
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	99.0
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.96
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.95
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.93
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.9
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.89
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.84
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.84
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.82
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.76
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.75
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.72
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.72
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.69
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.66
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.66
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.62
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.61
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.61
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.61
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.6
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.59
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.59
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.5
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.49
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.28
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.26
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.23
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.17
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.13
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.11
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.06
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.92
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.78
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.74
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.7
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.61
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.27
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.26
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.21
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.16
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.09
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.08
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.07
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.05
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.02
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.74
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.73
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.72
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.68
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.62
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.55
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.33
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	96.32
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.27
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.27
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.87
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.75
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	95.6
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.43
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.38
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	95.37
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.37
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	94.59
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.2
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	94.05
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	93.93
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	93.76
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	93.2
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	92.97
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	92.41
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	91.59
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	91.23
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	91.14
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	90.87
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	89.56
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	88.61
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	87.98
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	87.33
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	86.81
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	85.98
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	84.55
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	84.44
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	83.5
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	83.22
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	82.84
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	80.45

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=4.5e-33  Score=214.23  Aligned_cols=150  Identities=25%  Similarity=0.328  Sum_probs=137.4

Q ss_pred             CCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC-cEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC
Q psy8015           8 GSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP-NSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS   83 (165)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~   83 (165)
                      -|.|..+++|++.|. ++++++|||| |||||+|+.||++++ +|+++|+++++++.|+  ++++|.+|++++++|+.++
T Consensus        61 is~P~~~a~ml~~L~-l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g  139 (215)
T d1jg1a_          61 VSAPHMVAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKG  139 (215)
T ss_dssp             ECCHHHHHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred             hhhhhhHHHHHHhhc-cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccC
Confidence            367899999999996 5999999999 999999999999975 7999999999999996  7888999999999999999


Q ss_pred             CCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEeeeccCCCCCC
Q psy8015          84 FGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGLLYDVKAGYS  160 (165)
Q Consensus        84 ~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~~~~~  160 (165)
                      +++.++||+|+++++.+++|+.|.++|+|||+||+|++..+. |.+.+++|.++ .|..+.+++++|+||.+.. +|+
T Consensus       140 ~~~~~pfD~Iiv~~a~~~ip~~l~~qL~~gGrLv~pv~~~~~~q~l~~~~k~~~-~~~~~~l~~v~fvPl~g~~-~~~  215 (215)
T d1jg1a_         140 FPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRKTKD-GIKIKNHGGVAFVPLIGEY-GWK  215 (215)
T ss_dssp             CGGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEECSSSSCEEEEEEEEETT-EEEEEEEEEECCCBCBSTT-SBC
T ss_pred             CcccCcceeEEeecccccCCHHHHHhcCCCCEEEEEEccCCccEEEEEEEEECC-EEEEEEEccEEEEcCCCcc-cCC
Confidence            998999999999999999999999999999999999987654 78888888765 6999999999999999764 775

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=100.00  E-value=1.4e-32  Score=212.69  Aligned_cols=150  Identities=18%  Similarity=0.197  Sum_probs=136.4

Q ss_pred             CCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC
Q psy8015           8 GSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD   86 (165)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~   86 (165)
                      .|.|..+++|++.|. ++++++|||| |||||+|+.||+++++|+++|+++++++.|+....+..|++++++|+..++++
T Consensus        53 ~~~p~~~a~ml~~L~-l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~  131 (224)
T d1vbfa_          53 TTALNLGIFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEE  131 (224)
T ss_dssp             ECCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGG
T ss_pred             eehhhhHHHHHHHhh-hcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcccccccccCchhhcchh
Confidence            467889999999995 5999999999 99999999999999999999999999999973323467999999999988888


Q ss_pred             CCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCCceEEEEEEEccCCcEEEEEeeeEEEeeeccCCCCCC
Q psy8015          87 NGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQQMLTIYDKFHNGTIDIQHWGVVQVGLLYDVKAGYS  160 (165)
Q Consensus        87 ~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~~~~~~  160 (165)
                      .++||+|+++++.+++|+.+.++|||||+||+|++..+.|.+.+++|.++ .++.+.+++|+|+||.+.- +|+
T Consensus       132 ~~pfD~Iiv~~a~~~ip~~l~~qLk~GGrLV~pvg~~~~q~l~~i~k~~~-~~~~~~l~~v~F~pl~g~~-G~~  203 (224)
T d1vbfa_         132 EKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVGRVQKLYKVIKKGN-SPSLENLGEVMFGRIGGLY-GFY  203 (224)
T ss_dssp             GCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEECSSSSEEEEEEECCTT-SCEEEEEEEECCCBCCSTT-SCS
T ss_pred             hhhHHHHHhhcchhhhhHHHHHhcCCCCEEEEEEcCCCceEEEEEEEECC-ceEEEEeeeEEEEECCCcc-cCC
Confidence            89999999999999999999999999999999999876799999999764 6999999999999999875 786

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-32  Score=211.55  Aligned_cols=154  Identities=27%  Similarity=0.418  Sum_probs=136.9

Q ss_pred             CCchHHHHHHHHHHhc-CCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--ccc-----CCCCCeEE
Q psy8015           8 GSVSGAVAKYVTYLSG-HSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SST-----IDPDHDYD   75 (165)
Q Consensus         8 ~~~~~~~~~~l~~l~~-~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~-----~~~~nV~~   75 (165)
                      .|.|..+++|+++|.. ++||++|||| |||||.|+.||+++   ++|+++|+++++++.|+  +++     .+..|+++
T Consensus        57 is~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~  136 (224)
T d1i1na_          57 ISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQL  136 (224)
T ss_dssp             ECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEE
T ss_pred             hhhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEE
Confidence            4678999999999842 4799999999 99999999999985   58999999999999995  433     23568999


Q ss_pred             EEccCCCCCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEeeecc
Q psy8015          76 LIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGLLYD  154 (165)
Q Consensus        76 ~~gD~~~~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~pl~~  154 (165)
                      +.+|+..++++.++||+|+++++.+++|+.+.++|||||+||++++..+. |.+.+++|.+++.|..+.+++++|+||.+
T Consensus       137 ~~gD~~~~~~~~~~fD~I~~~~~~~~ip~~l~~~LkpGG~LV~pv~~~~~~q~l~~~~k~~~~~~~~~~l~~v~fvPl~~  216 (224)
T d1i1na_         137 VVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTD  216 (224)
T ss_dssp             EESCGGGCCGGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEESCTTSCEEEEEEEECTTSCEEEEEEEEECCCBCCC
T ss_pred             EEeecccccchhhhhhhhhhhcchhhcCHHHHhhcCCCcEEEEEEccCCCcEEEEEEEEeCCCeEEEEEEeeEEEECCCC
Confidence            99999988888889999999999999999999999999999999987654 88899999888889999999999999999


Q ss_pred             CCCCCCC
Q psy8015         155 VKAGYSM  161 (165)
Q Consensus       155 ~~~~~~~  161 (165)
                      .+++|+.
T Consensus       217 ~~~~~~~  223 (224)
T d1i1na_         217 KEKQWSR  223 (224)
T ss_dssp             HHHHCCC
T ss_pred             chhhccC
Confidence            9878763

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=3.4e-32  Score=210.36  Aligned_cols=145  Identities=29%  Similarity=0.377  Sum_probs=130.4

Q ss_pred             CCchHHHHHHHHHHh-cCCCCCeEEEE-ccccHHHHHHhccCC--------cEEEEeCCHHHHHhcc--c-----ccCCC
Q psy8015           8 GSVSGAVAKYVTYLS-GHSKRLDCLAL-TSNTKQSTTLPTFIP--------NSFNINVYYYLSGGPL--S-----STIDP   70 (165)
Q Consensus         8 ~~~~~~~~~~l~~l~-~~~~~~~vLei-~GsG~~t~~la~~~~--------~V~aiD~~~~~~~~A~--~-----~~~~~   70 (165)
                      -|.|..+++|++.|. .++|+++|||| |||||+|++||++++        +|+++|+++++++.|+  +     +..+.
T Consensus        61 is~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~  140 (223)
T d1r18a_          61 ISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS  140 (223)
T ss_dssp             ECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCc
Confidence            367899999999984 35899999999 999999999999863        7999999999999995  2     23457


Q ss_pred             CCeEEEEccCCCCCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCC-ceEEEEEEEccCCcEEEEEeeeEEE
Q psy8015          71 DHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTK-QQMLTIYDKFHNGTIDIQHWGVVQV  149 (165)
Q Consensus        71 ~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~-~~~~~~~~k~~~~~~~~~~l~~~~~  149 (165)
                      .||+++++|+.+++++.++||+|+++++.+++|+.+.++|||||+||++++... .|.+.+++|.++|.|+.+.+++|+|
T Consensus       141 ~nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV~pvg~~~~~q~l~~i~k~~~g~~~~~~l~~v~F  220 (223)
T d1r18a_         141 GQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMY  220 (223)
T ss_dssp             TSEEEEESCGGGCCGGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEESCSSSCEEEEEEEECTTSCEEEEEEEEECC
T ss_pred             cEEEEEecccccccccccceeeEEEEeechhchHHHHHhcCCCcEEEEEEecCCCcEEEEEEEEeCCCcEEEEEEeeEEe
Confidence            799999999999998889999999999999999999999999999999998654 4889999999888899999999999


Q ss_pred             eee
Q psy8015         150 GLL  152 (165)
Q Consensus       150 ~pl  152 (165)
                      +||
T Consensus       221 vPL  223 (223)
T d1r18a_         221 VPL  223 (223)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            997

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=1.3e-29  Score=194.38  Aligned_cols=148  Identities=15%  Similarity=0.179  Sum_probs=130.8

Q ss_pred             ecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEcc
Q psy8015           6 VSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIAD   79 (165)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD   79 (165)
                      .+.|+|..+++|+++|. ++|+++|||| |||||+|+.+|+.+   ++|+++|+++++++.|+  ++..+.+|+.++++|
T Consensus        56 ~~i~~P~~~a~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d  134 (213)
T d1dl5a1          56 STSSQPSLMALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGD  134 (213)
T ss_dssp             EEECCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred             eeeccchhhHHHHHhhh-ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCc
Confidence            34678999999999995 6999999999 99999999999875   47999999999999996  677889999999999


Q ss_pred             CCCCCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEEEecCCCc--eEEEEEEEccCCcEEEEEeeeEEEeeeccC
Q psy8015          80 GRASFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIPIGDTKQ--QMLTIYDKFHNGTIDIQHWGVVQVGLLYDV  155 (165)
Q Consensus        80 ~~~~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~~~~--~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~  155 (165)
                      +.+.++..++||+|+++++.+++|+.+.++|||||+||++++....  +.+..+.|. ++.+..+.+++++|+|+.+.
T Consensus       135 ~~~~~~~~~~fD~I~~~~~~~~~p~~l~~~LkpGG~lv~pv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Fvpl~g~  211 (213)
T d1dl5a1         135 GYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKK-DPYLVGNYKLETRFITAGGN  211 (213)
T ss_dssp             GGGCCGGGCCEEEEEECSBBSCCCHHHHHHEEEEEEEEEEBCBGGGTBCEEEEEEEE-TTEEEEEEEEECCCCBCCGG
T ss_pred             hHHccccccchhhhhhhccHHHhHHHHHHhcCCCcEEEEEECccCCcEEEEEEEEEe-CCeEEEEEEeeEEEEECCCC
Confidence            9888887789999999999999999999999999999999875432  566666665 56899999999999999875

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.84  E-value=5.8e-22  Score=147.87  Aligned_cols=108  Identities=13%  Similarity=0.069  Sum_probs=93.0

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCCC
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDNG   88 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~~   88 (165)
                      ..+.++.++. .+++++|||+ ||+|++|..+|+.+++|+++|+++++++.|+  ++++|+ +|++++++|+.+.+.+..
T Consensus        21 ir~~il~~l~-~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~   99 (186)
T d1l3ia_          21 VRCLIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP   99 (186)
T ss_dssp             HHHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSC
T ss_pred             HHHHHHHhcC-CCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccC
Confidence            3466777774 5899999999 9999999999999999999999999999996  677887 589999999877666667


Q ss_pred             CccEEEEcCCCCCch---HHHHhccccCcEEEEEec
Q psy8015          89 PYDAIHVGAAYPRYP---EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        89 ~fD~I~i~~~~~~~p---~~l~~~LkpgG~lvi~~~  121 (165)
                      .||.|+++....++.   +.+.+.|||||++++...
T Consensus       100 ~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~  135 (186)
T d1l3ia_         100 DIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI  135 (186)
T ss_dssp             CEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEee
Confidence            999999998877655   467889999999998764

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.83  E-value=1.1e-20  Score=143.55  Aligned_cols=107  Identities=12%  Similarity=0.120  Sum_probs=92.9

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCC
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGP   89 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~   89 (165)
                      .++++++.+. ++++++|||| ||+|.++..+++.+.+|+++|+|++|++.|+  .+..+.+|++++++|+.+...+.++
T Consensus         3 ~~~~ll~~~~-l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~   81 (231)
T d1vl5a_           3 DLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER   81 (231)
T ss_dssp             CHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred             hHHHHHHhcC-CCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhcccccccccccccccccccccccccc
Confidence            4688999985 6899999999 9999999999999999999999999999996  5667888999999998764334689


Q ss_pred             ccEEEEcCCCCCchH------HHHhccccCcEEEEEe
Q psy8015          90 YDAIHVGAAYPRYPE------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        90 fD~I~i~~~~~~~p~------~l~~~LkpgG~lvi~~  120 (165)
                      ||+|++..+.+++++      ++.+.|||||++++..
T Consensus        82 fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          82 FHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccccccccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            999999999887753      6899999999999853

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.80  E-value=1.1e-19  Score=138.96  Aligned_cols=105  Identities=8%  Similarity=0.088  Sum_probs=89.9

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCc
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPY   90 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~f   90 (165)
                      ..-|++.+. ++|++||||| ||+|.++..|++.+.+|+++|+|+.|++.|+  .+..+.+|+.++++|+.+...++++|
T Consensus         5 ~~~l~~~~~-~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~f   83 (234)
T d1xxla_           5 LGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF   83 (234)
T ss_dssp             HHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred             HHHHHHHhC-CCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccccccccccccccccccccccc
Confidence            344667764 5999999999 9999999999999999999999999999996  55567889999999997743456899


Q ss_pred             cEEEEcCCCCCch------HHHHhccccCcEEEEE
Q psy8015          91 DAIHVGAAYPRYP------EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        91 D~I~i~~~~~~~p------~~l~~~LkpgG~lvi~  119 (165)
                      |+|++..+.++++      .++.+.|||||++++.
T Consensus        84 D~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~  118 (234)
T d1xxla_          84 DIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLV  118 (234)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEE
Confidence            9999999987765      3678999999999885

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=2.9e-18  Score=132.00  Aligned_cols=109  Identities=15%  Similarity=0.055  Sum_probs=90.5

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASF   84 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~   84 (165)
                      .+.....+.+.+ .+.|+++|||| ||+|..+..+++.. .+|+++|+|++|++.||  .+..|+. +|+|+.+|+.+..
T Consensus        18 ~~~~~~~l~~~~-~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~   96 (245)
T d1nkva_          18 TEEKYATLGRVL-RMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV   96 (245)
T ss_dssp             CHHHHHHHHHHT-CCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC
T ss_pred             CHHHHHHHHHHc-CCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc
Confidence            456667777776 46899999999 99999999998765 59999999999999996  5566765 4999999997754


Q ss_pred             CCCCCccEEEEcCCCCCch------HHHHhccccCcEEEEEe
Q psy8015          85 GDNGPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        85 ~~~~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~  120 (165)
                       ..++||.|++..+..+++      +++.+.|||||++++..
T Consensus        97 -~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_          97 -ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             -CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             -ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEe
Confidence             468999999988877664      36889999999999854

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.74  E-value=4.7e-18  Score=133.35  Aligned_cols=114  Identities=14%  Similarity=0.047  Sum_probs=93.9

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--ccc---CCCCCeEEEEccC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SST---IDPDHDYDLIADG   80 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~---~~~~nV~~~~gD~   80 (165)
                      -|.-.+.++.++. ++||++|||+ ||||++|..||+.+   ++|+++|+++++++.|+  ++.   ...+|++++++|.
T Consensus        81 ypkD~s~Ii~~l~-i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~  159 (264)
T d1i9ga_          81 YPKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL  159 (264)
T ss_dssp             CHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred             chHHHHHHHHHhC-CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccc
Confidence            3455678888885 6999999999 99999999999975   69999999999999996  333   2357999999998


Q ss_pred             CCCCCCCCCccEEEEcCCCC-CchHHHHhccccCcEEEEEecCCC
Q psy8015          81 RASFGDNGPYDAIHVGAAYP-RYPEIFIHHLKSGGRLVIPIGDTK  124 (165)
Q Consensus        81 ~~~~~~~~~fD~I~i~~~~~-~~p~~l~~~LkpgG~lvi~~~~~~  124 (165)
                      .+...+++.||+||++...+ ...+.+.+.|||||++++.++..+
T Consensus       160 ~~~~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~P~i~  204 (264)
T d1i9ga_         160 ADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVT  204 (264)
T ss_dssp             GGCCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESSHH
T ss_pred             ccccccCCCcceEEEecCCHHHHHHHHHhccCCCCEEEEEeCccC
Confidence            77544568999999986554 466789999999999999887543

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.73  E-value=9.5e-19  Score=136.39  Aligned_cols=135  Identities=10%  Similarity=-0.009  Sum_probs=97.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccC-CCCCeEEEEccCCCCCC
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTI-DPDHDYDLIADGRASFG   85 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~-~~~nV~~~~gD~~~~~~   85 (165)
                      -.+.++.++ .++||++|||+ ||||++|..||+.+   ++|+++|+++++++.|+  +++. +..||++.++|..+.++
T Consensus        73 D~~~Ii~~l-~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~  151 (250)
T d1yb2a1          73 DASYIIMRC-GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS  151 (250)
T ss_dssp             --------C-CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC
T ss_pred             HHHHHHHHc-CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc
Confidence            345677777 46999999999 99999999999864   58999999999999996  5554 56799999999987654


Q ss_pred             CCCCccEEEEcCCCC-CchHHHHhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEee
Q psy8015          86 DNGPYDAIHVGAAYP-RYPEIFIHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGL  151 (165)
Q Consensus        86 ~~~~fD~I~i~~~~~-~~p~~l~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~p  151 (165)
                       ++.||+|+++...+ ...+.+.+.|||||++++.++..+. +.+....+.  .+|...+..|+.-.+
T Consensus       152 -~~~fD~V~ld~p~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~--~gf~~i~~~E~~~R~  216 (250)
T d1yb2a1         152 -DQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSA--SGMHHLETVELMKRR  216 (250)
T ss_dssp             -SCCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGG--GTEEEEEEEEEEECC
T ss_pred             -cceeeeeeecCCchHHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHH--CCCceeEEEEEEeEE
Confidence             47899999976544 4567889999999999998775431 222222232  347777777765433

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.73  E-value=9.7e-18  Score=125.26  Aligned_cols=117  Identities=15%  Similarity=0.045  Sum_probs=92.7

Q ss_pred             EecCCchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCC--CeEEEEcc
Q psy8015           5 FVSGSVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPD--HDYDLIAD   79 (165)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~--nV~~~~gD   79 (165)
                      |+.+.++-....+++.+. ..++++|||+ ||+|+++..+++.+.+|+++|+|+.+++.|+  ++..+++  +++++.+|
T Consensus        32 F~~~~~d~~t~lLi~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d  110 (194)
T d1dusa_          32 FSYGKVDKGTKILVENVV-VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSD  110 (194)
T ss_dssp             TTTTSCCHHHHHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECS
T ss_pred             cCCCCcCHHHHHHHHhCC-cCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcc
Confidence            445555555566778775 4789999999 9999999999999999999999999999996  4444554  58999999


Q ss_pred             CCCCCCCCCCccEEEEcCCCCCch-------HHHHhccccCcEEEEEecCC
Q psy8015          80 GRASFGDNGPYDAIHVGAAYPRYP-------EIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        80 ~~~~~~~~~~fD~I~i~~~~~~~p-------~~l~~~LkpgG~lvi~~~~~  123 (165)
                      ..+.++ .++||+|+++...+...       +.+.+.|||||++++.+...
T Consensus       111 ~~~~~~-~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  160 (194)
T d1dusa_         111 LYENVK-DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             TTTTCT-TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             hhhhhc-cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeCc
Confidence            877444 57899999987765433       34678999999998876543

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.7e-18  Score=139.51  Aligned_cols=136  Identities=14%  Similarity=0.059  Sum_probs=98.2

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccC-----------CCCCe
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTI-----------DPDHD   73 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~-----------~~~nV   73 (165)
                      |.-.+.++.+|. +.||++|||+ ||+|++|..||+.+   ++|+++|+++++++.|+  ++++           ..+||
T Consensus        84 pkD~~~Il~~l~-i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv  162 (324)
T d2b25a1          84 PKDINMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNV  162 (324)
T ss_dssp             HHHHHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCE
T ss_pred             cccHHHHHHHhC-CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccce
Confidence            455778888884 6999999999 99999999999975   58999999999999995  3321           24689


Q ss_pred             EEEEccCCCCCC--CCCCccEEEEcCCCC-CchHHHHhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeE
Q psy8015          74 YDLIADGRASFG--DNGPYDAIHVGAAYP-RYPEIFIHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVV  147 (165)
Q Consensus        74 ~~~~gD~~~~~~--~~~~fD~I~i~~~~~-~~p~~l~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~  147 (165)
                      ++.++|......  +...||+||++-..+ ...+++.+.|||||+|++.++..+. +.+....|..+..|...+..|+
T Consensus       163 ~~~~~di~~~~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~i~~~E~  240 (324)
T d2b25a1         163 DFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKISEV  240 (324)
T ss_dssp             EEEESCTTCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred             eEEecchhhcccccCCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCceeeEEEEE
Confidence            999999865322  246899999986544 5667889999999999998875432 2222222332334666655555

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=3.9e-17  Score=128.16  Aligned_cols=135  Identities=13%  Similarity=-0.000  Sum_probs=104.1

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRAS   83 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~   83 (165)
                      |...+.++.++. ++||++|||+ ||||++|..||+.+   ++|+++|+++++++.|+  ++++++ +++.+..+|....
T Consensus        89 pkd~~~Ii~~l~-i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~  167 (266)
T d1o54a_          89 PKDSSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG  167 (266)
T ss_dssp             HHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC
T ss_pred             hHHHHHHHHhhC-CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc
Confidence            455677888884 6999999999 99999999999876   58999999999999996  677786 5799999997665


Q ss_pred             CCCCCCccEEEEcCCCC-CchHHHHhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEE
Q psy8015          84 FGDNGPYDAIHVGAAYP-RYPEIFIHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQV  149 (165)
Q Consensus        84 ~~~~~~fD~I~i~~~~~-~~p~~l~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~  149 (165)
                      ++ ...||.|+++...+ .+.+++.+.|||||++++.++..+. ++.....+.  ..|...+..|+..
T Consensus       168 ~~-~~~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~--~gF~~i~~~E~l~  232 (266)
T d1o54a_         168 FD-EKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQE--LPFIRIEVWESLF  232 (266)
T ss_dssp             CS-CCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHH--SSEEEEEEECCCC
T ss_pred             cc-ccceeeeEecCCCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHH--CCceeEEEEEEEE
Confidence            54 46799999986654 5668899999999999998875431 222222232  3477777666543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=4.7e-17  Score=122.20  Aligned_cols=97  Identities=13%  Similarity=0.117  Sum_probs=82.0

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR  101 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~  101 (165)
                      +++.+|||| ||+|..+..+++...+|+++|+|++|++.|+  ....+ .++.++.+|+.+...+.++||+|++..+.++
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~-~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~  114 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSFEDKTFDYVIFIDSIVH  114 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred             CCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhcccc-ccccccccccccccccCcCceEEEEecchhh
Confidence            678999999 9999999999999889999999999999996  33344 4688999998875445689999999999887


Q ss_pred             chH--------HHHhccccCcEEEEEecC
Q psy8015         102 YPE--------IFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus       102 ~p~--------~l~~~LkpgG~lvi~~~~  122 (165)
                      +++        ++.+.|||||++++...+
T Consensus       115 ~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         115 FEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             CCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            652        478999999999887643

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.68  E-value=4.8e-17  Score=127.51  Aligned_cols=98  Identities=13%  Similarity=-0.011  Sum_probs=82.5

Q ss_pred             cCCCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCCccEEEEcC
Q psy8015          23 GHSKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGPYDAIHVGA   97 (165)
Q Consensus        23 ~~~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~fD~I~i~~   97 (165)
                      .+.++.+|||| ||+|..+..|++. ..+|+++|+++.|++.|+  .+..|+. |++++.+|+.+...+.++||+|++..
T Consensus        64 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~  143 (282)
T d2o57a1          64 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD  143 (282)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred             CCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccc
Confidence            34789999999 9999999999976 458999999999999996  5556764 79999999977544568999999998


Q ss_pred             CCCCchH------HHHhccccCcEEEEEe
Q psy8015          98 AYPRYPE------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        98 ~~~~~p~------~l~~~LkpgG~lvi~~  120 (165)
                      +..++++      ++.+.|||||++++..
T Consensus       144 ~l~h~~d~~~~l~~~~~~LkpgG~l~~~~  172 (282)
T d2o57a1         144 AFLHSPDKLKVFQECARVLKPRGVMAITD  172 (282)
T ss_dssp             CGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhccCHHHHHHHHHHhcCCCcEEEEEE
Confidence            8877663      6789999999999853

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=1.5e-17  Score=129.85  Aligned_cols=113  Identities=13%  Similarity=0.101  Sum_probs=85.5

Q ss_pred             EEecCCchHHHHHHHHHHhc-CCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEcc
Q psy8015           4 VFVSGSVSGAVAKYVTYLSG-HSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIAD   79 (165)
Q Consensus         4 ~~~~~~~~~~~~~~l~~l~~-~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD   79 (165)
                      .|++|.-+.. +-++++|.. ..|+++|||+ ||||.++..+++...+|+++|+|+.|++.|+  .+..++ +++++++|
T Consensus        98 aFGTG~H~TT-~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~-~~~~~~~d  175 (254)
T d2nxca1          98 AFGTGHHETT-RLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGV-RPRFLEGS  175 (254)
T ss_dssp             ----CCSHHH-HHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTC-CCEEEESC
T ss_pred             ccCccccchh-hHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCC-ceeEEecc
Confidence            5888887753 344455432 2689999999 9999999999999899999999999999996  455566 56889999


Q ss_pred             CCCCCCCCCCccEEEEcCCCCC---chHHHHhccccCcEEEEE
Q psy8015          80 GRASFGDNGPYDAIHVGAAYPR---YPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        80 ~~~~~~~~~~fD~I~i~~~~~~---~p~~l~~~LkpgG~lvi~  119 (165)
                      .....+ .++||+|+++...+.   +.+.+.+.|||||++++.
T Consensus       176 ~~~~~~-~~~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilS  217 (254)
T d2nxca1         176 LEAALP-FGPFDLLVANLYAELHAALAPRYREALVPGGRALLT  217 (254)
T ss_dssp             HHHHGG-GCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccc-ccccchhhhccccccHHHHHHHHHHhcCCCcEEEEE
Confidence            765433 478999998754442   335688999999999984

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.68  E-value=1.2e-16  Score=119.16  Aligned_cols=103  Identities=15%  Similarity=-0.035  Sum_probs=84.8

Q ss_pred             HHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEE
Q psy8015          17 YVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAI   93 (165)
Q Consensus        17 ~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I   93 (165)
                      +++.+.... +.+|||| ||+|..+..|++...+|+++|+|+.|++.|+  .+..+.+|+++..+|..+..+ .++||+|
T Consensus        22 ~~~~~~~~~-~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I   99 (198)
T d2i6ga1          22 VLAAAKVVA-PGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFI   99 (198)
T ss_dssp             HHHHHTTSC-SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEE
T ss_pred             HHHHcccCC-CCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEE
Confidence            444454333 4599999 9999999999999889999999999999996  566788899999999876444 5789999


Q ss_pred             EEcCCCCCchH--------HHHhccccCcEEEEEec
Q psy8015          94 HVGAAYPRYPE--------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        94 ~i~~~~~~~p~--------~l~~~LkpgG~lvi~~~  121 (165)
                      ++....+++|+        .+.+.|+|||++++...
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1         100 LSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             EEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            99988887652        46789999999998653

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.2e-16  Score=121.22  Aligned_cols=98  Identities=9%  Similarity=-0.004  Sum_probs=82.0

Q ss_pred             CCCCCeEEEE-ccccHHHHHHh-ccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLP-TFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la-~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      ..++.+|||| ||+|..+..++ +...+|+++|+|++|++.||  ++..+..|++++++|+.+...+.++||+|++....
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l  137 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI  137 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            3577899999 99999998765 55678999999999999997  55556778999999997754456899999999999


Q ss_pred             CCchH--------HHHhccccCcEEEEEec
Q psy8015         100 PRYPE--------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       100 ~~~p~--------~l~~~LkpgG~lvi~~~  121 (165)
                      +++++        ++.+.|||||.+++...
T Consensus       138 ~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~  167 (222)
T d2ex4a1         138 GHLTDQHLAEFLRRCKGSLRPNGIIVIKDN  167 (222)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccchhhhhhhHHHHHHHhcCCcceEEEEEc
Confidence            88763        46899999999998654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.62  E-value=1.2e-15  Score=116.68  Aligned_cols=95  Identities=12%  Similarity=0.010  Sum_probs=76.9

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcC-CCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGA-AYP  100 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~-~~~  100 (165)
                      .+.++|||| ||+|..+..|++...+|+++|+|++|++.|+  ++..+. +++++++|+.+. +..++||+|++.. +..
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l-~~~~~fD~I~~~~~~~~  117 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEI-AFKNEFDAVTMFFSTIM  117 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGC-CCCSCEEEEEECSSGGG
T ss_pred             CCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccc-cchheehhhhhc-ccccccchHhhhhhhhh
Confidence            567899999 9999999999998889999999999999997  444444 799999998764 3346899999864 333


Q ss_pred             Cc--h------HHHHhccccCcEEEEEec
Q psy8015         101 RY--P------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       101 ~~--p------~~l~~~LkpgG~lvi~~~  121 (165)
                      ++  +      ..+.+.|||||++++...
T Consensus       118 ~~~~~~~~~~L~~~~~~LkpgG~lii~~~  146 (251)
T d1wzna1         118 YFDEEDLRKLFSKVAEALKPGGVFITDFP  146 (251)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            33  2      257899999999998653

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.61  E-value=1.1e-15  Score=117.19  Aligned_cols=107  Identities=14%  Similarity=0.051  Sum_probs=81.7

Q ss_pred             HHHHHHHHHhcC-CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCC
Q psy8015          13 AVAKYVTYLSGH-SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNG   88 (165)
Q Consensus        13 ~~~~~l~~l~~~-~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~   88 (165)
                      ....+++.+... .++++|||+ ||+|..+..|++.+.+|+|+|.|++|++.|+  .+..+. |++++++|+.+. +..+
T Consensus        23 ~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~-~~~~  100 (246)
T d1y8ca_          23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNL-NINR  100 (246)
T ss_dssp             HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGC-CCSC
T ss_pred             HHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCc-cceeeccchhhh-cccc
Confidence            344455555433 346899999 9999999999999999999999999999996  444454 799999998763 3346


Q ss_pred             CccEEEEcC-CCCCch---------HHHHhccccCcEEEEEec
Q psy8015          89 PYDAIHVGA-AYPRYP---------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        89 ~fD~I~i~~-~~~~~p---------~~l~~~LkpgG~lvi~~~  121 (165)
                      +||+|++.. +..+++         ..+.+.|||||.+++.+.
T Consensus       101 ~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  143 (246)
T d1y8ca_         101 KFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             CEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence            899999853 333332         357899999999997553

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.61  E-value=1.2e-15  Score=115.81  Aligned_cols=106  Identities=12%  Similarity=0.025  Sum_probs=85.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCcc
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYD   91 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD   91 (165)
                      +...+++.+....++++|||| ||+|.++..+++.+.+|+++|+|+++++.|+.+.  .+|++++++|..... ..++||
T Consensus         7 ~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~--~~~~~~~~~~~~~~~-~~~~fD   83 (225)
T d2p7ia1           7 MHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRL--KDGITYIHSRFEDAQ-LPRRYD   83 (225)
T ss_dssp             HHHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHS--CSCEEEEESCGGGCC-CSSCEE
T ss_pred             HHHHHHHHhhhhCCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhccc--ccccccccccccccc-cccccc
Confidence            344555666555678899999 9999999999998889999999999999997332  247999999986543 357899


Q ss_pred             EEEEcCCCCCchH------HHH-hccccCcEEEEEec
Q psy8015          92 AIHVGAAYPRYPE------IFI-HHLKSGGRLVIPIG  121 (165)
Q Consensus        92 ~I~i~~~~~~~p~------~l~-~~LkpgG~lvi~~~  121 (165)
                      +|++....+++++      ++. ++|+|||++++.+.
T Consensus        84 ~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~p  120 (225)
T d2p7ia1          84 NIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCP  120 (225)
T ss_dssp             EEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeC
Confidence            9999999887764      344 67999999999875

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.6e-16  Score=120.21  Aligned_cols=110  Identities=15%  Similarity=0.113  Sum_probs=93.2

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRA   82 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~   82 (165)
                      ++...++++..|....+.++|||| ||+||.|.++|+..   ++|+++|.+++..+.|+  +++.|..+ ++++.||+.+
T Consensus        43 i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e  122 (219)
T d2avda1          43 MTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE  122 (219)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhh
Confidence            566788888888776788999999 99999999999864   69999999999999997  77778765 9999999865


Q ss_pred             CCC------CCCCccEEEEcCCCCCchH---HHHhccccCcEEEEE
Q psy8015          83 SFG------DNGPYDAIHVGAAYPRYPE---IFIHHLKSGGRLVIP  119 (165)
Q Consensus        83 ~~~------~~~~fD~I~i~~~~~~~p~---~l~~~LkpgG~lvi~  119 (165)
                      .++      ..++||.||+++....+++   .+.+.|+|||.+++.
T Consensus       123 ~l~~~~~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~D  168 (219)
T d2avda1         123 TLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVL  168 (219)
T ss_dssp             HHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cchhhhhhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEe
Confidence            332      2468999999999987764   678999999999884

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.61  E-value=2.5e-16  Score=120.92  Aligned_cols=110  Identities=15%  Similarity=0.118  Sum_probs=92.4

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRA   82 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~   82 (165)
                      ++...++++..|....+.++|||| |++||.|.++|+..   ++|+++|.+++.++.|+  +++.|..+ ++++.||+.+
T Consensus        43 ~~~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~  122 (227)
T d1susa1          43 TSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP  122 (227)
T ss_dssp             CCHHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHH
Confidence            456678888888766678999999 99999999999764   69999999999999997  77778765 9999999865


Q ss_pred             CCCC-------CCCccEEEEcCCCCCchH---HHHhccccCcEEEEE
Q psy8015          83 SFGD-------NGPYDAIHVGAAYPRYPE---IFIHHLKSGGRLVIP  119 (165)
Q Consensus        83 ~~~~-------~~~fD~I~i~~~~~~~p~---~l~~~LkpgG~lvi~  119 (165)
                      .++.       .++||.||+++....+++   .+.+.|+|||.+++-
T Consensus       123 ~L~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         123 VLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             HHHHHHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             HHHHHHhccccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEc
Confidence            4332       468999999999988774   578999999999985

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.60  E-value=7.9e-16  Score=112.75  Aligned_cols=106  Identities=10%  Similarity=-0.084  Sum_probs=83.2

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCC------------CCCeEEEEc
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTID------------PDHDYDLIA   78 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~------------~~nV~~~~g   78 (165)
                      ...++..|. ..|+.||||+ ||+|+.+..||+.+.+|+++|+|++|++.|+  .+..+            ..+++++.+
T Consensus         9 ~~~~~~~l~-~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (201)
T d1pjza_           9 LQQYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG   87 (201)
T ss_dssp             HHHHHHHHC-CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred             HHHHHHHcC-CCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecc
Confidence            444566664 4899999999 9999999999999999999999999999996  22221            235688899


Q ss_pred             cCCCCCCC-CCCccEEEEcCCCCCchH--------HHHhccccCcEEEEEe
Q psy8015          79 DGRASFGD-NGPYDAIHVGAAYPRYPE--------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        79 D~~~~~~~-~~~fD~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~  120 (165)
                      |.....+. ...||+|+.....+.+++        .+.+.|||||++++..
T Consensus        88 d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          88 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             cccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence            88664322 357999999888877653        4789999999987754

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.59  E-value=1.7e-15  Score=117.65  Aligned_cols=106  Identities=9%  Similarity=0.031  Sum_probs=85.6

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHh-ccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLP-TFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDA   92 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la-~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~   92 (165)
                      ..+++.+.. .+..+|||+ ||+|.+|..|+ +...+|+++|.+++|++.||.+..+.++++++++|..+...+.++||+
T Consensus        83 ~~fl~~l~~-~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~  161 (254)
T d1xtpa_          83 RNFIASLPG-HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDL  161 (254)
T ss_dssp             HHHHHTSTT-CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEE
T ss_pred             HHHHhhCCC-CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccce
Confidence            456666643 678899999 99999998766 557889999999999999984433556799999998764445689999


Q ss_pred             EEEcCCCCCchH--------HHHhccccCcEEEEEec
Q psy8015          93 IHVGAAYPRYPE--------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        93 I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~~  121 (165)
                      |++....+++++        ++.+.|||||++++...
T Consensus       162 I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~  198 (254)
T d1xtpa_         162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEec
Confidence            999999988864        46899999999998543

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=3.9e-15  Score=116.21  Aligned_cols=94  Identities=14%  Similarity=0.055  Sum_probs=79.6

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR  101 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~  101 (165)
                      .++.+|||| ||+|+++..|++..  .+++++|+|++|++.|+.+   ..|++++++|+.+...++++||+|++..+.++
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~---~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~  159 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR---YPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK  159 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH---CTTSEEEECCTTSCSBCTTCEEEEEEESCCCC
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc---cccccceeeehhhccCCCCCEEEEeecCCHHH
Confidence            578899999 99999999999876  3899999999999998633   35899999999875445689999998877666


Q ss_pred             chHHHHhccccCcEEEEEecC
Q psy8015         102 YPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus       102 ~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      + +++.+.|||||++++....
T Consensus       160 ~-~e~~rvLkpgG~l~~~~p~  179 (268)
T d1p91a_         160 A-EELARVVKPGGWVITATPG  179 (268)
T ss_dssp             H-HHHHHHEEEEEEEEEEEEC
T ss_pred             H-HHHHHHhCCCcEEEEEeeC
Confidence            4 6689999999999998754

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=1.9e-15  Score=114.65  Aligned_cols=93  Identities=12%  Similarity=-0.019  Sum_probs=74.5

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcC-CCCCc
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGA-AYPRY  102 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~-~~~~~  102 (165)
                      .++.+|||+ ||+|.++..|++.+.+|+++|+|+.|++.|+.+  +..  .++.+|+.+...+.++||+|++.+ ..+++
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~--~~~--~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~  116 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREK--GVK--NVVEAKAEDLPFPSGAFEAVLALGDVLSYV  116 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHH--TCS--CEEECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred             CCCCEEEEECCCCchhcccccccceEEEEeecccccccccccc--ccc--ccccccccccccccccccceeeecchhhhh
Confidence            567899999 999999999999988999999999999999743  222  356788876433458999999864 44544


Q ss_pred             h------HHHHhccccCcEEEEEec
Q psy8015         103 P------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       103 p------~~l~~~LkpgG~lvi~~~  121 (165)
                      +      +++.+.|||||++++.+.
T Consensus       117 ~d~~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1         117 ENKDKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhHHHHHHHHHhhcCcCcEEEEEEC
Confidence            4      367899999999999763

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.59  E-value=3e-15  Score=117.56  Aligned_cols=103  Identities=16%  Similarity=0.076  Sum_probs=82.7

Q ss_pred             HHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCc
Q psy8015          17 YVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPY   90 (165)
Q Consensus        17 ~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~f   90 (165)
                      ++..+..+.+..+|||+ ||+|..+..+++..   .+|+++|+|+++++.|+  .+..+. |++|+++|+.+. +..++|
T Consensus        18 l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~-~~~~~f   95 (281)
T d2gh1a1          18 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEI-ELNDKY   95 (281)
T ss_dssp             HHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTC-CCSSCE
T ss_pred             HHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-cccccccccccc-cccCCc
Confidence            33333334678899999 99999999999864   47999999999999997  444454 799999998763 334689


Q ss_pred             cEEEEcCCCCCch------HHHHhccccCcEEEEEec
Q psy8015          91 DAIHVGAAYPRYP------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        91 D~I~i~~~~~~~p------~~l~~~LkpgG~lvi~~~  121 (165)
                      |+|++....++++      +++.+.|||||++++..+
T Consensus        96 D~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1          96 DIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             EEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             eEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence            9999999988765      358899999999998764

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.6e-15  Score=113.58  Aligned_cols=111  Identities=6%  Similarity=-0.081  Sum_probs=85.4

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhccc--cc-----------------CC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLS--ST-----------------ID   69 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~--~~-----------------~~   69 (165)
                      ......+++..+....++.||||+ ||+|..+..||+.+.+|+++|+|+.+++.|+.  ..                 ..
T Consensus        29 ~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~  108 (229)
T d2bzga1          29 GHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSS  108 (229)
T ss_dssp             CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeec
Confidence            344444555444345789999999 99999999999999999999999999998741  10                 11


Q ss_pred             CCCeEEEEccCCCCC-CCCCCccEEEEcCCCCCch--------HHHHhccccCcEEEEEe
Q psy8015          70 PDHDYDLIADGRASF-GDNGPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        70 ~~nV~~~~gD~~~~~-~~~~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~  120 (165)
                      ..++++.++|..+.. ...+.||+|+..+..++++        ..+.+.|||||++++..
T Consensus       109 ~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~  168 (229)
T d2bzga1         109 SGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV  168 (229)
T ss_dssp             TSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence            247999999987632 3457899999999888764        35789999999987764

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.57  E-value=3.5e-15  Score=115.07  Aligned_cols=97  Identities=9%  Similarity=0.091  Sum_probs=78.9

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCC-CCCCCccEEEEcCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASF-GDNGPYDAIHVGAA   98 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~-~~~~~fD~I~i~~~   98 (165)
                      +++++|||+ ||+|..+..+++.. ++|+|+|+|++|++.|+  .+..+. .++.+.++|+.... ....+||+|++..+
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~  102 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS  102 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence            689999999 99999998888865 68999999999999996  344444 37999999986543 34568999999988


Q ss_pred             CCCch----------HHHHhccccCcEEEEEec
Q psy8015          99 YPRYP----------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        99 ~~~~p----------~~l~~~LkpgG~lvi~~~  121 (165)
                      .++++          ..+.+.|||||++++.+.
T Consensus       103 l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~  135 (252)
T d1ri5a_         103 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  135 (252)
T ss_dssp             GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence            87653          246789999999998654

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.57  E-value=6e-15  Score=116.20  Aligned_cols=103  Identities=14%  Similarity=0.115  Sum_probs=81.6

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCC
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNG   88 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~   88 (165)
                      ..++++.| .++||++|||| ||.|.++..+++. ..+|+++|+|+++++.|+  .++.|+. ++.+...|..+ +  .+
T Consensus        41 ~~~~~~~l-~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~-~--~~  116 (280)
T d2fk8a1          41 VDLNLDKL-DLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-F--AE  116 (280)
T ss_dssp             HHHHHTTS-CCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-C--CC
T ss_pred             HHHHHHHc-CCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh-h--cc
Confidence            33444444 34799999999 9999999999876 569999999999999996  5666764 47888888543 2  36


Q ss_pred             CccEEEEcCCCCCch--------HHHHhccccCcEEEEEe
Q psy8015          89 PYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        89 ~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~  120 (165)
                      +||.|++....++++        +.+.+.|||||++++-.
T Consensus       117 ~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         117 PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             chhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence            899999998887664        35789999999999853

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.56  E-value=4.5e-15  Score=110.73  Aligned_cols=91  Identities=11%  Similarity=0.016  Sum_probs=75.8

Q ss_pred             cCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015          23 GHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR  101 (165)
Q Consensus        23 ~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~  101 (165)
                      .+.|+.+|||| ||+|.++..++    +++++|.|++|++.|+.+     |++++++|+.+...+.++||+|++....++
T Consensus        33 ~~~~~~~vLDiGcG~G~~~~~~~----~~~giD~s~~~~~~a~~~-----~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h  103 (208)
T d1vlma_          33 CLLPEGRGVEIGVGTGRFAVPLK----IKIGVEPSERMAEIARKR-----GVFVLKGTAENLPLKDESFDFALMVTTICF  103 (208)
T ss_dssp             HHCCSSCEEEETCTTSTTHHHHT----CCEEEESCHHHHHHHHHT-----TCEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred             hhCCCCeEEEECCCCcccccccc----eEEEEeCChhhccccccc-----cccccccccccccccccccccccccccccc
Confidence            33577899999 99999988775    479999999999999743     689999999775445689999999999887


Q ss_pred             chH------HHHhccccCcEEEEEecC
Q psy8015         102 YPE------IFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus       102 ~p~------~l~~~LkpgG~lvi~~~~  122 (165)
                      +++      ++.+.|+|||++++....
T Consensus       104 ~~d~~~~l~~~~~~L~pgG~l~i~~~~  130 (208)
T d1vlma_         104 VDDPERALKEAYRILKKGGYLIVGIVD  130 (208)
T ss_dssp             SSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ccccccchhhhhhcCCCCceEEEEecC
Confidence            763      678999999999997643

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.54  E-value=1.4e-14  Score=111.05  Aligned_cols=97  Identities=13%  Similarity=0.062  Sum_probs=76.1

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC-CCCCccEEEEcCCC
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG-DNGPYDAIHVGAAY   99 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~-~~~~fD~I~i~~~~   99 (165)
                      ++||++|||+ ||+|+.+..+|+.+  ++|+|+|+|++|++.|+.+....+|+..+.+|+..... ....+|++++....
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~  151 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDV  151 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccc
Confidence            4899999999 99999999999986  68999999999999997333346789999999865332 23456766665555


Q ss_pred             CCch------HHHHhccccCcEEEEEe
Q psy8015         100 PRYP------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus       100 ~~~p------~~l~~~LkpgG~lvi~~  120 (165)
                      ++.+      .++.+.|||||++++..
T Consensus       152 ~~~~~~~~~l~~~~r~LKpgG~~~i~~  178 (230)
T d1g8sa_         152 AQPNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchHHHHHHHHHHHHhcccCceEEEEe
Confidence            5443      35788999999999875

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.53  E-value=1.3e-14  Score=114.91  Aligned_cols=103  Identities=12%  Similarity=0.055  Sum_probs=82.0

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCCCCC
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFGDNG   88 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~~~~   88 (165)
                      ...+++.+ .+++|++|||| ||.|.++..+|.. ..+|+++++|++.++.|+  .+..|+.+ +++...|...   ..+
T Consensus        50 ~~~~~~~l-~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~---~~~  125 (291)
T d1kpia_          50 RKLALDKL-NLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE---FDE  125 (291)
T ss_dssp             HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG---CCC
T ss_pred             HHHHHHhc-CCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc---ccc
Confidence            44555555 34899999999 9999999988854 569999999999999986  55667654 8888888642   247


Q ss_pred             CccEEEEcCCCCCch---------------HHHHhccccCcEEEEEe
Q psy8015          89 PYDAIHVGAAYPRYP---------------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        89 ~fD~I~i~~~~~~~p---------------~~l~~~LkpgG~lvi~~  120 (165)
                      +||.|++-...++++               ..+.++|||||++++-.
T Consensus       126 ~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         126 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             CCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             ccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence            899999998887764               25789999999999843

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.53  E-value=9.1e-15  Score=110.61  Aligned_cols=98  Identities=14%  Similarity=0.046  Sum_probs=74.8

Q ss_pred             cCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC---CCCccEEEEc
Q psy8015          23 GHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD---NGPYDAIHVG   96 (165)
Q Consensus        23 ~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~---~~~fD~I~i~   96 (165)
                      .++||++|||+ ||+|+.+..+|+.+  ++|+|+|++++|++.|+.+.....|+.++.+|+......   ...+|+++.+
T Consensus        53 ~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~  132 (209)
T d1nt2a_          53 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD  132 (209)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEec
Confidence            34899999999 99999999999987  579999999999999962222346999999998753221   2356767665


Q ss_pred             CCCCCch----HHHHhccccCcEEEEEe
Q psy8015          97 AAYPRYP----EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        97 ~~~~~~p----~~l~~~LkpgG~lvi~~  120 (165)
                      -..+..+    .++.+.|||||++++..
T Consensus       133 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         133 IAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             CCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            4444433    35679999999999875

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=3.3e-15  Score=113.52  Aligned_cols=110  Identities=10%  Similarity=0.013  Sum_probs=88.3

Q ss_pred             CchHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCC
Q psy8015           9 SVSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGR   81 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~   81 (165)
                      +++...++++..+....+.++|||+ ||+|+.|.+||+..   ++|+++|.++++++.|+  ++..|+. +|+++.||+.
T Consensus        39 ~i~~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~  118 (214)
T d2cl5a1          39 NVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQ  118 (214)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred             ccCHHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccc
Confidence            3667778888888766677999999 99999999999864   68999999999999996  6777875 5999999986


Q ss_pred             CCCCC------CCCccEEEEcCCCCCchH-----HHHhccccCcEEEE
Q psy8015          82 ASFGD------NGPYDAIHVGAAYPRYPE-----IFIHHLKSGGRLVI  118 (165)
Q Consensus        82 ~~~~~------~~~fD~I~i~~~~~~~p~-----~l~~~LkpgG~lvi  118 (165)
                      +.++.      .++||.||+++....+..     ...+.|||||.+++
T Consensus       119 e~l~~l~~~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         119 DLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             HHGGGHHHHSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             ccccchhhcccccccceeeecccccccccHHHHHHHhCccCCCcEEEE
Confidence            54332      367999999987765543     34577999998766

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.50  E-value=3.4e-14  Score=108.82  Aligned_cols=110  Identities=15%  Similarity=0.111  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHHh--cCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC-
Q psy8015          11 SGAVAKYVTYLS--GHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS-   83 (165)
Q Consensus        11 ~~~~~~~l~~l~--~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~-   83 (165)
                      |-.-|.++.-+.  .++||++|||+ ||+|+.+..||+.+   ++|+|+|++++|++.++.......|+..+.+|+... 
T Consensus        56 SKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~  135 (227)
T d1g8aa_          56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPE  135 (227)
T ss_dssp             CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGG
T ss_pred             cHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcc
Confidence            334455544332  24799999999 99999999999985   689999999999999963222456888899987542 


Q ss_pred             -C-CCCCCccEEEEcCCCCCch----HHHHhccccCcEEEEEe
Q psy8015          84 -F-GDNGPYDAIHVGAAYPRYP----EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        84 -~-~~~~~fD~I~i~~~~~~~p----~~l~~~LkpgG~lvi~~  120 (165)
                       + .....+|+|+.+...+..+    ..+.+.|||||++++..
T Consensus       136 ~~~~~~~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~~  178 (227)
T d1g8aa_         136 EYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             GGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccceEEEEEEccccchHHHHHHHHHHhcccCCeEEEEE
Confidence             1 1236789999976665443    45679999999999875

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.49  E-value=8e-14  Score=105.39  Aligned_cols=94  Identities=13%  Similarity=0.003  Sum_probs=75.6

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC----CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCCCCccEEEEc
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI----PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDNGPYDAIHVG   96 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~----~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~~~fD~I~i~   96 (165)
                      +|+.+|||+ ||+|..+..|++..    .+|+++|+|++|++.|+  ++..+. .++++..+|.... + ...||.|++.
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~d~i~~~  115 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV-E-IKNASMVILN  115 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC-C-CCSEEEEEEE
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc-c-cccceeeEEe
Confidence            689999999 99999999998753    48999999999999997  444443 4688888887543 2 4679999998


Q ss_pred             CCCCCch--------HHHHhccccCcEEEEEe
Q psy8015          97 AAYPRYP--------EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        97 ~~~~~~p--------~~l~~~LkpgG~lvi~~  120 (165)
                      ...++++        +++.+.|||||.+++..
T Consensus       116 ~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_         116 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             SCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeccccChhhHHHHHHHHHHhCCCCceeeccc
Confidence            8776653        35789999999999864

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.48  E-value=1.4e-13  Score=108.55  Aligned_cols=108  Identities=12%  Similarity=0.098  Sum_probs=84.2

Q ss_pred             CchHHHHHHHHHHhc---CCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccC
Q psy8015           9 SVSGAVAKYVTYLSG---HSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADG   80 (165)
Q Consensus         9 ~~~~~~~~~l~~l~~---~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~   80 (165)
                      |...++.++++.+..   ++||++|||| ||.|.++..+|+.. .+|+++++|++.++.|+  .++.|+ +++++..+|.
T Consensus        42 tL~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~  121 (285)
T d1kpga_          42 TLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW  121 (285)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG
T ss_pred             CHHHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhh
Confidence            344455555554433   3799999999 99999999988765 59999999999999995  455565 4699999997


Q ss_pred             CCCCCCCCCccEEEEcCCCCCch--------HHHHhccccCcEEEEE
Q psy8015          81 RASFGDNGPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        81 ~~~~~~~~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~  119 (165)
                      .+ ++  ++||.|+.-....++.        .++.+.|||||++++-
T Consensus       122 ~~-~~--~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~  165 (285)
T d1kpga_         122 EQ-FD--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLH  165 (285)
T ss_dssp             GG-CC--CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hc-cc--ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEE
Confidence            54 23  6899999988877653        3578999999999974

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.8e-14  Score=107.43  Aligned_cols=94  Identities=14%  Similarity=-0.011  Sum_probs=72.6

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC--CCCCCCccEEEEcCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS--FGDNGPYDAIHVGAA   98 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~--~~~~~~fD~I~i~~~   98 (165)
                      .+|++|||| ||+|+++..+++.. .+|+++|+|+.+++.|+  .+.. ..++.++.+|+...  ..+.++||.|+++..
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~  130 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ-THKVIPLKGLWEDVAPTLPDGHFDGILYDTY  130 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGC-SSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhc-ccccccccccccccccccccccccceeeccc
Confidence            578999999 99999999999865 68999999999999997  3332 34688888886431  223578999998754


Q ss_pred             CC-----Cch------HHHHhccccCcEEEEE
Q psy8015          99 YP-----RYP------EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        99 ~~-----~~p------~~l~~~LkpgG~lvi~  119 (165)
                      ..     +++      +++.+.|||||++++.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         131 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            43     333      2478999999999873

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.45  E-value=7.7e-14  Score=108.73  Aligned_cols=105  Identities=10%  Similarity=-0.025  Sum_probs=83.1

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASF   84 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~   84 (165)
                      ......++..++   ++|++|||+ ||+|+++..+|+.. .+|+++|+|+++++.++  .+..+++| ++++++|+.+. 
T Consensus        94 ~~~er~ri~~~~---~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~-  169 (260)
T d2frna1          94 NVKERVRMAKVA---KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF-  169 (260)
T ss_dssp             GHHHHHHHHHHC---CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC-
T ss_pred             CHHHHHHHHhhc---CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHh-
Confidence            444555665553   689999999 99999999999876 58999999999999996  66667765 99999999764 


Q ss_pred             CCCCCccEEEEcCCCC--CchHHHHhccccCcEEEE
Q psy8015          85 GDNGPYDAIHVGAAYP--RYPEIFIHHLKSGGRLVI  118 (165)
Q Consensus        85 ~~~~~fD~I~i~~~~~--~~p~~l~~~LkpgG~lvi  118 (165)
                      ...+.||.|+++....  ..-+...+.|++||.+.+
T Consensus       170 ~~~~~~D~Ii~~~p~~~~~~l~~a~~~l~~gG~lh~  205 (260)
T d2frna1         170 PGENIADRILMGYVVRTHEFIPKALSIAKDGAIIHY  205 (260)
T ss_dssp             CCCSCEEEEEECCCSSGGGGHHHHHHHEEEEEEEEE
T ss_pred             ccCCCCCEEEECCCCchHHHHHHHHhhcCCCCEEEE
Confidence            4457899999974432  334566789999999865

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.44  E-value=1.3e-13  Score=103.90  Aligned_cols=97  Identities=9%  Similarity=0.053  Sum_probs=80.2

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC--CCCCCccEEEEcC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF--GDNGPYDAIHVGA   97 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~--~~~~~fD~I~i~~   97 (165)
                      .++..|||| ||+|.++..+|+..  ..++|+|+++.+++.|.  .++.+++||.++.+|+...+  .+.+.+|.|++..
T Consensus        28 ~~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f  107 (204)
T d2fcaa1          28 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF  107 (204)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred             CCCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccc
Confidence            356789999 99999999999986  57999999999999984  66778999999999986532  3457899999987


Q ss_pred             CCCCc--------------hHHHHhccccCcEEEEEec
Q psy8015          98 AYPRY--------------PEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        98 ~~~~~--------------p~~l~~~LkpgG~lvi~~~  121 (165)
                      ..|..              .+.+.+.|||||+|++...
T Consensus       108 p~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD  145 (204)
T d2fcaa1         108 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD  145 (204)
T ss_dssp             CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred             ccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence            76632              2457899999999998754

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.44  E-value=3.8e-14  Score=113.35  Aligned_cols=98  Identities=11%  Similarity=-0.024  Sum_probs=79.5

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC---C-CCCCCccEEEEcC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS---F-GDNGPYDAIHVGA   97 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~---~-~~~~~fD~I~i~~   97 (165)
                      .+|++|||+ ||+|.++..+|+.+.+|+++|+|+++++.|+  .+..|++|++++++|+.+.   + ....+||+|+++.
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp  223 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP  223 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             hCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence            579999999 9999999999987889999999999999996  6677889999999998542   1 2246899999986


Q ss_pred             CCC-----Cc----------hHHHHhccccCcEEEEEecC
Q psy8015          98 AYP-----RY----------PEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        98 ~~~-----~~----------p~~l~~~LkpgG~lvi~~~~  122 (165)
                      ...     .+          .....+.|||||+|+.....
T Consensus       224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs  263 (318)
T d1wxxa2         224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  263 (318)
T ss_dssp             CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            532     11          12457889999999997654

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=7.4e-14  Score=112.54  Aligned_cols=138  Identities=10%  Similarity=0.001  Sum_probs=105.2

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC----
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD----   86 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~----   86 (165)
                      ...+++++. ..++++|||+ ||+|.+|..||+.+++|+++|.++++++.|+  .+..|++|++++.+|..+.+..    
T Consensus       201 ~~~v~~~~~-~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~  279 (358)
T d1uwva2         201 VARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA  279 (358)
T ss_dssp             HHHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGG
T ss_pred             HHHHHHhhc-cCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhh
Confidence            345555664 3688999999 9999999999999999999999999999996  5677899999999998764432    


Q ss_pred             CCCccEEEEcCCCCCchHHH--HhccccCcEEEEEecCCCc-eEEEEEEEccCCcEEEEEeeeEEEeeeccC
Q psy8015          87 NGPYDAIHVGAAYPRYPEIF--IHHLKSGGRLVIPIGDTKQ-QMLTIYDKFHNGTIDIQHWGVVQVGLLYDV  155 (165)
Q Consensus        87 ~~~fD~I~i~~~~~~~p~~l--~~~LkpgG~lvi~~~~~~~-~~~~~~~k~~~~~~~~~~l~~~~~~pl~~~  155 (165)
                      ...||+|+++....-..+.+  ...++|.-++++.|++.+. ..+..+.+   ++|..+.+..+++.|.+.+
T Consensus       280 ~~~~d~vilDPPR~G~~~~~~~l~~~~~~~ivYVSCnp~TlaRDl~~l~~---~gy~l~~i~~~D~FP~T~H  348 (358)
T d1uwva2         280 KNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLK---AGYTIARLAMLDMFPHTGH  348 (358)
T ss_dssp             TTCCSEEEECCCTTCCHHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHH---TTCEEEEEEEECCSTTSSC
T ss_pred             hccCceEEeCCCCccHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH---CCCeEeEEEEEecCCCCcc
Confidence            36799999997665444422  2335777788888886553 33333323   3599999999999998764

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=5.5e-13  Score=104.54  Aligned_cols=105  Identities=14%  Similarity=0.016  Sum_probs=74.8

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCC----CCeEEEEccCCC---CC
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDP----DHDYDLIADGRA---SF   84 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~----~nV~~~~gD~~~---~~   84 (165)
                      ..+.+.+.. .++++|||+ ||+|..+..|++...+|+|+|+|++|++.|+  ....+.    .+..+..+|...   ..
T Consensus        46 ~~l~~~l~~-~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T d1xvaa_          46 AWLLGLLRQ-HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV  124 (292)
T ss_dssp             HHHHHHHHH-TTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred             HHHHHHhhh-cCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccccc
Confidence            344555544 568899999 9999999999998889999999999999996  222222    123444554321   23


Q ss_pred             CCCCCccEEEEcC-CCCCc-------------hHHHHhccccCcEEEEEe
Q psy8015          85 GDNGPYDAIHVGA-AYPRY-------------PEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        85 ~~~~~fD~I~i~~-~~~~~-------------p~~l~~~LkpgG~lvi~~  120 (165)
                      +....||.|++.+ +..++             ..++.+.|||||++++.+
T Consensus       125 ~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         125 PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             CCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence            4456899999854 34433             246789999999999864

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.39  E-value=6.1e-13  Score=102.50  Aligned_cols=101  Identities=12%  Similarity=0.045  Sum_probs=79.8

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCCCC
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDNGP   89 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~~~   89 (165)
                      .+++.+. ..+.++|||| ||+|.++..+++..  .+++.+|+ +++++.|+  ++..+. ++++++.+|..+..+  .+
T Consensus        71 ~~~~~~d-~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~--~~  146 (253)
T d1tw3a2          71 APAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP--RK  146 (253)
T ss_dssp             HHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS--SC
T ss_pred             HHHhhcC-CccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhcc--cc
Confidence            4445543 3677899999 99999999999886  36888997 67888885  455555 579999999876443  47


Q ss_pred             ccEEEEcCCCCCchH--------HHHhccccCcEEEEEe
Q psy8015          90 YDAIHVGAAYPRYPE--------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        90 fD~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~  120 (165)
                      ||+|++....+++++        ++.+.|||||++++..
T Consensus       147 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         147 ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEe
Confidence            999999998887753        4689999999999864

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.36  E-value=3.8e-13  Score=96.56  Aligned_cols=107  Identities=8%  Similarity=0.001  Sum_probs=79.5

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhc-cCCcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCC-CCCCC
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPT-FIPNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASF-GDNGP   89 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~-~~~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~-~~~~~   89 (165)
                      .+..+|...-.|.+|||+ ||||.++..++. .+.+|+++|.++++++.++  ++..+..+ ++++++|+...+ ....+
T Consensus         4 ~~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~   83 (152)
T d2esra1           4 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGR   83 (152)
T ss_dssp             HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSC
T ss_pred             HHHHHHHhhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccc
Confidence            345666543579999999 999999986654 4579999999999999986  66777755 999999986532 22468


Q ss_pred             ccEEEEcCCCCC-----chHHH--HhccccCcEEEEEecC
Q psy8015          90 YDAIHVGAAYPR-----YPEIF--IHHLKSGGRLVIPIGD  122 (165)
Q Consensus        90 fD~I~i~~~~~~-----~p~~l--~~~LkpgG~lvi~~~~  122 (165)
                      ||.||++.....     ..+.+  .+.|+|||.+++-+..
T Consensus        84 fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~  123 (152)
T d2esra1          84 FDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDK  123 (152)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             cceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence            999999865431     11223  2569999999986653

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.3e-12  Score=101.94  Aligned_cols=93  Identities=11%  Similarity=-0.148  Sum_probs=71.6

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc-cccCC-CCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL-SSTID-PDHDYDLIADGRASFGDNGPYDAIHVGAAYP  100 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~-~~~~~-~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~  100 (165)
                      .++++|||| ||+|.++..+|+.+ .+|+++|.++.+...++ .+..+ .++++++++|..+...+..+||+|++....+
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~  113 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGY  113 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBT
T ss_pred             CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeee
Confidence            578999999 99999999999986 68999999999876554 33334 3579999999877544457999999864433


Q ss_pred             C-----chH----HHHhccccCcEEE
Q psy8015         101 R-----YPE----IFIHHLKSGGRLV  117 (165)
Q Consensus       101 ~-----~p~----~l~~~LkpgG~lv  117 (165)
                      .     .++    ...+.|||||+++
T Consensus       114 ~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         114 FLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             TBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             ecccccccHHHHHHHHhcCCCCcEEe
Confidence            2     222    3457899999986

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.34  E-value=6e-13  Score=106.46  Aligned_cols=99  Identities=9%  Similarity=-0.049  Sum_probs=78.2

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCC----CCCCCccEEEE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASF----GDNGPYDAIHV   95 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~----~~~~~fD~I~i   95 (165)
                      +++++|||+ ||+|.++..++... .+|+++|+|+++++.|+  ++..|+. +++++++|+.+.+    ....+||+|++
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~  223 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  223 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence            689999999 99999999988764 68999999999999995  6667774 6999999986422    13468999999


Q ss_pred             cCCCCC---------------chHHHHhccccCcEEEEEecCC
Q psy8015          96 GAAYPR---------------YPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        96 ~~~~~~---------------~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      +.....               +.....+.|+|||+|+......
T Consensus       224 DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~  266 (324)
T d2as0a2         224 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  266 (324)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            865421               1124568999999999976543

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=7.9e-13  Score=105.90  Aligned_cols=108  Identities=11%  Similarity=-0.019  Sum_probs=81.3

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--ccc---------CCCCCeEE
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SST---------IDPDHDYD   75 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~---------~~~~nV~~   75 (165)
                      ....+..+++.+. ++++++|||+ ||+|.++..+|+.  +.+++|+|+++++++.|+  .++         ....++++
T Consensus       136 ~~~~~~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~  214 (328)
T d1nw3a_         136 SFDLVAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL  214 (328)
T ss_dssp             CHHHHHHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred             HHHHHHHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEE
Confidence            5667788898884 5899999999 9999999988876  458999999999999985  211         23458999


Q ss_pred             EEccCCCCCCCCC--CccEEEEcCCCCCch------HHHHhccccCcEEEEE
Q psy8015          76 LIADGRASFGDNG--PYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        76 ~~gD~~~~~~~~~--~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~  119 (165)
                      ++||+.+......  ..|+|+++... +.+      .++++.|||||++|+.
T Consensus       215 ~~gd~~~~~~~~~~~~advi~~~~~~-f~~~~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         215 ERGDFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             EECCTTSHHHHHHHHHCSEEEECCTT-TCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             EECcccccccccccCcceEEEEccee-cchHHHHHHHHHHHhCCCCcEEEEe
Confidence            9999865311111  24788886544 333      3578999999999873

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.33  E-value=3.8e-12  Score=95.66  Aligned_cols=96  Identities=13%  Similarity=0.075  Sum_probs=78.8

Q ss_pred             CCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC--CCCCCccEEEEcCC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF--GDNGPYDAIHVGAA   98 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~--~~~~~fD~I~i~~~   98 (165)
                      ....|||| ||+|.++..+|+..  ..++++|+++.++..|.  .++.+++|+.++.+|+....  .+..++|.|++...
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP  110 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  110 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence            45789999 99999999999986  47999999999999884  66778999999999987632  24578999999876


Q ss_pred             CCCc--------------hHHHHhccccCcEEEEEec
Q psy8015          99 YPRY--------------PEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        99 ~~~~--------------p~~l~~~LkpgG~lvi~~~  121 (165)
                      .|..              .+.+.+.|||||.+.+..+
T Consensus       111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD  147 (204)
T d1yzha1         111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD  147 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred             ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence            6521              2457899999999988654

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=2.6e-12  Score=102.53  Aligned_cols=92  Identities=12%  Similarity=-0.140  Sum_probs=70.4

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCC-CCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDP-DHDYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~-~nV~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      .++++|||| ||+|.++..+|+.+ .+|+++|.++ +++.|+  .+..+. ++++++++|..+...+..+||+|++....
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~  115 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence            479999999 99999999999886 6899999996 666675  444454 46999999987754445789999986443


Q ss_pred             C-----Cch----HHHHhccccCcEEE
Q psy8015         100 P-----RYP----EIFIHHLKSGGRLV  117 (165)
Q Consensus       100 ~-----~~p----~~l~~~LkpgG~lv  117 (165)
                      .     ...    ....+.|||||+++
T Consensus       116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         116 YFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeccchhHHHHHHHHHhccCCCeEEE
Confidence            3     222    23458999999874

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=2.3e-12  Score=102.42  Aligned_cols=93  Identities=8%  Similarity=-0.211  Sum_probs=70.5

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc-cccCCC-CCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL-SSTIDP-DHDYDLIADGRASFGDNGPYDAIHVGAAYP  100 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~-~~~~~~-~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~  100 (165)
                      .++++|||| ||+|.++..+|+.+ .+|+++|.++.+....+ .+..+. ++|+++++|..+...+.++||+|++.....
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~  111 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY  111 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence            478999999 99999999999985 68999999986544334 444455 459999999977544557899998864432


Q ss_pred             C-----ch----HHHHhccccCcEEE
Q psy8015         101 R-----YP----EIFIHHLKSGGRLV  117 (165)
Q Consensus       101 ~-----~p----~~l~~~LkpgG~lv  117 (165)
                      .     ..    +.+.+.|||||+++
T Consensus       112 ~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         112 CLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             TBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            2     22    34578999999976

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=3.1e-12  Score=100.20  Aligned_cols=98  Identities=16%  Similarity=0.084  Sum_probs=79.0

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      ..+.+|||+ ||||..+..++...  .+|+++|+|+++++.|+  .++++++||+++++|..+.++ ..+||+|+++..+
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~-~~~fDlIvsNPPY  185 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA-GQQFAMIVSNPPY  185 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT-TCCEEEEEECCCC
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccC-CCceeEEEecchh
Confidence            456789999 99999999998876  48999999999999996  677788899999999877655 3689999998543


Q ss_pred             C---C----------ch------------------HHHHhccccCcEEEEEecCC
Q psy8015         100 P---R----------YP------------------EIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus       100 ~---~----------~p------------------~~l~~~LkpgG~lvi~~~~~  123 (165)
                      -   .          -|                  +...+.|+|||.+++-++..
T Consensus       186 i~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~  240 (274)
T d2b3ta1         186 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ  240 (274)
T ss_dssp             BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS
T ss_pred             hhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECch
Confidence            1   0          01                  12457899999999988753

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.31  E-value=8.5e-13  Score=105.44  Aligned_cols=100  Identities=12%  Similarity=0.038  Sum_probs=76.8

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cc--cCCCCCeEEEEccCCCCC----CCCCCccEE
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SS--TIDPDHDYDLIADGRASF----GDNGPYDAI   93 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~--~~~~~nV~~~~gD~~~~~----~~~~~fD~I   93 (165)
                      ..+|++|||+ ||+|.+|..++... .+|+++|+|+.+++.|+  ++  .++..+++++.+|+.+-+    ....+||+|
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I  221 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  221 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence            4679999999 99999999887754 58999999999999996  33  334468999999986432    234689999


Q ss_pred             EEcCCCC-----C----------chHHHHhccccCcEEEEEecCC
Q psy8015          94 HVGAAYP-----R----------YPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        94 ~i~~~~~-----~----------~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      +++...-     .          +-....+.|+|||.|++.....
T Consensus       222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~  266 (317)
T d2b78a2         222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  266 (317)
T ss_dssp             EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            9985521     1          1124578999999999977654

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.30  E-value=1.5e-12  Score=95.17  Aligned_cols=110  Identities=8%  Similarity=-0.045  Sum_probs=76.5

Q ss_pred             HHHHHHHHhc-CCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCC--CCCC
Q psy8015          14 VAKYVTYLSG-HSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRA--SFGD   86 (165)
Q Consensus        14 ~~~~l~~l~~-~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~--~~~~   86 (165)
                      ...+..+|.. +.++.+|||+ ||+|.++..++....+|+++|.|+++++.++  ++..+..+ +....+|...  ....
T Consensus        28 ~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~  107 (171)
T d1ws6a1          28 RKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQ  107 (171)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHT
T ss_pred             HHHHHHHhhccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhccccccccc
Confidence            3445555542 2578999999 9999999988888889999999999999996  56666643 4443444321  1123


Q ss_pred             CCCccEEEEcCCCC-CchH---HH--HhccccCcEEEEEecCC
Q psy8015          87 NGPYDAIHVGAAYP-RYPE---IF--IHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        87 ~~~fD~I~i~~~~~-~~p~---~l--~~~LkpgG~lvi~~~~~  123 (165)
                      ..+||+||++..+. ...+   .+  ..+|+|||++++-+..+
T Consensus       108 ~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie~~~~  150 (171)
T d1ws6a1         108 GERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             TCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             CCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEEecCC
Confidence            46899999987643 2222   23  24799999998876543

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.7e-12  Score=99.73  Aligned_cols=98  Identities=8%  Similarity=-0.001  Sum_probs=70.6

Q ss_pred             CCCeEEEE-ccccHHHHHHhccC--------CcEEEEeCCHHHHHhcc--ccc-CCCCCeEEE--EccCC------CCCC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFI--------PNSFNINVYYYLSGGPL--SST-IDPDHDYDL--IADGR------ASFG   85 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~--------~~V~aiD~~~~~~~~A~--~~~-~~~~nV~~~--~gD~~------~~~~   85 (165)
                      +..+|||| ||+|.++..+++..        .+++++|.|+.|++.|+  .++ ....++.+.  ..++.      ....
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK  119 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSS
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccC
Confidence            34489999 99999988776532        36899999999999996  222 234556554  33321      1122


Q ss_pred             CCCCccEEEEcCCCCCchH------HHHhccccCcEEEEEecCC
Q psy8015          86 DNGPYDAIHVGAAYPRYPE------IFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        86 ~~~~fD~I~i~~~~~~~p~------~l~~~LkpgG~lvi~~~~~  123 (165)
                      +.++||+|++..+.+++++      .+.++|+|||.+++.+...
T Consensus       120 ~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~  163 (280)
T d1jqea_         120 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG  163 (280)
T ss_dssp             SCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             CCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecC
Confidence            3578999999999887653      5789999999999987543

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=2.3e-12  Score=95.12  Aligned_cols=108  Identities=9%  Similarity=0.123  Sum_probs=80.3

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHh-ccCCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC-CCCC
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLP-TFIPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF-GDNG   88 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la-~~~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~-~~~~   88 (165)
                      ...+..+|...-.+.+|||+ ||||.++..++ +-+.+|+.+|.|+++++.++  ++..+..|++++.+|+..-+ ....
T Consensus        31 re~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~  110 (183)
T d2fpoa1          31 RETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGT  110 (183)
T ss_dssp             HHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCC
T ss_pred             HHHHHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeeccccccccccc
Confidence            34444555332367899999 99999998554 55679999999999999996  66678889999999986533 2346


Q ss_pred             CccEEEEcCCCCC--ch---HHHH--hccccCcEEEEEec
Q psy8015          89 PYDAIHVGAAYPR--YP---EIFI--HHLKSGGRLVIPIG  121 (165)
Q Consensus        89 ~fD~I~i~~~~~~--~p---~~l~--~~LkpgG~lvi~~~  121 (165)
                      +||+||++..+..  +.   +.+.  ..|+++|.+++-+.
T Consensus       111 ~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1         111 PHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESE  150 (183)
T ss_dssp             CEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             ccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            8999999987653  22   2232  46899999988653

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.28  E-value=2.5e-12  Score=95.00  Aligned_cols=113  Identities=9%  Similarity=0.018  Sum_probs=84.1

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASF   84 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~   84 (165)
                      -+..-..+..+|.....+.+|||+ ||||.++..++.. +.+|+.+|.|+++++.++  ++.++.. +++++++|+...+
T Consensus        25 ~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l  104 (182)
T d2fhpa1          25 TDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRAL  104 (182)
T ss_dssp             CHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhh
Confidence            345556677777654679999999 9999999866655 578999999999999996  5555554 7999999986532


Q ss_pred             ----CCCCCccEEEEcCCCC--Cch---HHHH--hccccCcEEEEEecC
Q psy8015          85 ----GDNGPYDAIHVGAAYP--RYP---EIFI--HHLKSGGRLVIPIGD  122 (165)
Q Consensus        85 ----~~~~~fD~I~i~~~~~--~~p---~~l~--~~LkpgG~lvi~~~~  122 (165)
                          ....+||.||++..+.  .+.   +.+.  ..|+|+|.+++-+..
T Consensus       105 ~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E~~~  153 (182)
T d2fhpa1         105 EQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDK  153 (182)
T ss_dssp             HHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             hhhcccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence                1345899999998653  222   3343  369999998876543

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.23  E-value=1.6e-11  Score=94.87  Aligned_cols=93  Identities=11%  Similarity=-0.001  Sum_probs=76.3

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCC-CeEEEEccCCCCCCCCCCccEEEEcCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPD-HDYDLIADGRASFGDNGPYDAIHVGAA   98 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~-nV~~~~gD~~~~~~~~~~fD~I~i~~~   98 (165)
                      .+..+|||| ||+|.++..+++..  -+++++|+ +++++.|+  ++..+.. +++++.+|.....+  ..||+|++...
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p--~~~D~v~~~~v  156 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP--VTADVVLLSFV  156 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS--CCEEEEEEESC
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccccc--ccchhhhcccc
Confidence            567899999 99999999999986  47999997 78888885  5555654 59999999876544  36999999998


Q ss_pred             CCCchH--------HHHhccccCcEEEEEe
Q psy8015          99 YPRYPE--------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        99 ~~~~p~--------~l~~~LkpgG~lvi~~  120 (165)
                      +++.++        ++.+.|||||++++..
T Consensus       157 Lh~~~d~~~~~lL~~i~~~LkpgG~llI~d  186 (256)
T d1qzza2         157 LLNWSDEDALTILRGCVRALEPGGRLLVLD  186 (256)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccCcHHHHHHHHHHHhhcCCcceeEEEE
Confidence            887653        4678999999999864

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.19  E-value=1.1e-11  Score=98.53  Aligned_cols=106  Identities=11%  Similarity=-0.015  Sum_probs=77.4

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCCC--CCeEEEEccCCCCCC---
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTIDP--DHDYDLIADGRASFG---   85 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~~--~nV~~~~gD~~~~~~---   85 (165)
                      ...+.+.+....++.+|||+ ||||.++..++..+.+|+++|.|+.+++.|+  ++..++  .+++++++|+.+-+.   
T Consensus       120 r~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~  199 (309)
T d2igta1         120 WEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREE  199 (309)
T ss_dssp             HHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHH
T ss_pred             HHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHh
Confidence            33344455555678999999 9999999999988889999999999999996  443344  369999999865332   


Q ss_pred             -CCCCccEEEEcCCC-----CC--------ch---HHHHhccccCcEEEEE
Q psy8015          86 -DNGPYDAIHVGAAY-----PR--------YP---EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        86 -~~~~fD~I~i~~~~-----~~--------~p---~~l~~~LkpgG~lvi~  119 (165)
                       ...+||+|+++...     ..        ++   ..+.++|+|||.+++.
T Consensus       200 ~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~  250 (309)
T d2igta1         200 RRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL  250 (309)
T ss_dssp             HHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred             hcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence             24689999998542     01        11   2356789999975554

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=7.6e-12  Score=95.33  Aligned_cols=97  Identities=11%  Similarity=-0.144  Sum_probs=67.4

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCC----------------------------
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDH----------------------------   72 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~n----------------------------   72 (165)
                      .++.+|||+ ||+|..+..++... .+|+++|+|+.|++.|+  ++......                            
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  129 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence            467899999 99999988787654 57999999999999996  33222110                            


Q ss_pred             -e-EEEEccC----CCCCCCCCCccEEEEcCCCCCch----------HHHHhccccCcEEEEEec
Q psy8015          73 -D-YDLIADG----RASFGDNGPYDAIHVGAAYPRYP----------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        73 -V-~~~~gD~----~~~~~~~~~fD~I~i~~~~~~~p----------~~l~~~LkpgG~lvi~~~  121 (165)
                       + .....+.    .......++||+|++....++++          +.+.+.|||||++++...
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~  194 (257)
T d2a14a1         130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT  194 (257)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEe
Confidence             1 1111221    11122357899999988776553          357899999999998654

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.11  E-value=2.9e-10  Score=84.84  Aligned_cols=91  Identities=8%  Similarity=-0.053  Sum_probs=68.2

Q ss_pred             CCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR  101 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~  101 (165)
                      .|++|||+ ||||.++..++... .+|+++|+|+++++.|+  ++..+. +.+++.+|+...   ..+||+|+++.....
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~-~~~~~~~d~~~~---~~~fD~Vi~nPP~~~  121 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEF---NSRVDIVIMNPPFGS  121 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGC---CCCCSEEEECCCCSS
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC-CceEEECchhhh---CCcCcEEEEcCcccc
Confidence            68899999 99999998877765 58999999999999996  555554 689999998653   357999999876542


Q ss_pred             c---h--HHHHhccccCcEEEEEe
Q psy8015         102 Y---P--EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus       102 ~---p--~~l~~~LkpgG~lvi~~  120 (165)
                      .   .  +.+...+.+++.++..+
T Consensus       122 ~~~~~d~~~l~~~~~~~~~v~~ih  145 (201)
T d1wy7a1         122 QRKHADRPFLLKAFEISDVVYSIH  145 (201)
T ss_dssp             SSTTTTHHHHHHHHHHCSEEEEEE
T ss_pred             ccccccHHHHHHHHhhcccchhcc
Confidence            1   1  23444556666555543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.11  E-value=1.4e-10  Score=95.17  Aligned_cols=108  Identities=10%  Similarity=-0.064  Sum_probs=77.0

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--ccc---------CCCCCeEE
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SST---------IDPDHDYD   75 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~---------~~~~nV~~   75 (165)
                      .+..+..+++.+. ++|+++|||| ||+|.++..+|..  +.+|+|+|+++.|++.|+  .++         ....++.+
T Consensus       201 ~~~~i~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~  279 (406)
T d1u2za_         201 LPNFLSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF  279 (406)
T ss_dssp             CHHHHHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred             CHHHHHHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccccee
Confidence            4678899999985 5999999999 9999999999876  468999999999999995  221         12233444


Q ss_pred             E-EccCCCCCC---CCCCccEEEEcCCCCCch------HHHHhccccCcEEEEE
Q psy8015          76 L-IADGRASFG---DNGPYDAIHVGAAYPRYP------EIFIHHLKSGGRLVIP  119 (165)
Q Consensus        76 ~-~gD~~~~~~---~~~~fD~I~i~~~~~~~p------~~l~~~LkpgG~lvi~  119 (165)
                      . .++......   ....+|+|+++... +.+      .++++.|||||++|..
T Consensus       280 ~~~~~f~~~~~~d~~~~~adVV~inn~~-f~~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         280 SLKKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             EESSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             eeeechhhccccccccccceEEEEeccc-CchHHHHHHHHHHHhcCCCcEEEEe
Confidence            2 333322110   12357899987543 222      3678999999999873

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.08  E-value=1.2e-10  Score=86.64  Aligned_cols=110  Identities=15%  Similarity=0.053  Sum_probs=84.5

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCC-
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRAS-   83 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~-   83 (165)
                      +|=+...++++|.. .+++.++|+ ||+|..|..+....  ++|+++|.|++|++.|+  ++..+ +++.+++++..+. 
T Consensus         8 ~pVll~evi~~l~~-~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~-~r~~~~~~~f~~~~   85 (192)
T d1m6ya2           8 IPVMVREVIEFLKP-EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREAD   85 (192)
T ss_dssp             CCTTHHHHHHHHCC-CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHH
T ss_pred             CchHHHHHHHhhCC-CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc-ccccchhHHHhhHH
Confidence            34466788999964 899999999 99999998888764  68999999999999996  44443 4799999986431 


Q ss_pred             ----CCCCCCccEEEEcCCCCCc---------------hHHHHhccccCcEEEEEec
Q psy8015          84 ----FGDNGPYDAIHVGAAYPRY---------------PEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        84 ----~~~~~~fD~I~i~~~~~~~---------------p~~l~~~LkpgG~lvi~~~  121 (165)
                          ....++||.|+.+.++...               .+...+.|+|||++++..-
T Consensus        86 ~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f  142 (192)
T d1m6ya2          86 FLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF  142 (192)
T ss_dssp             HHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred             HHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence                1124689999999776421               1346789999999998653

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.05  E-value=2.6e-10  Score=85.03  Aligned_cols=69  Identities=10%  Similarity=-0.023  Sum_probs=57.6

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      -.|++|||+ ||||.++..++... .+|+++|+|+++++.|+..   ..+++++.+|..+.   .++||.|+++..+
T Consensus        47 l~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N---~~~~~~~~~D~~~l---~~~fD~Vi~NPPf  117 (197)
T d1ne2a_          47 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRN---CGGVNFMVADVSEI---SGKYDTWIMNPPF  117 (197)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHH---CTTSEEEECCGGGC---CCCEEEEEECCCC
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHc---cccccEEEEehhhc---CCcceEEEeCccc
Confidence            368999999 99999998888775 6799999999999999732   45789999998653   3689999998655

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.04  E-value=6e-10  Score=86.82  Aligned_cols=109  Identities=13%  Similarity=0.081  Sum_probs=80.1

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCCC-C
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFGD-N   87 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~~-~   87 (165)
                      +...++.... .+..+++|+ ||+|..+..+++.- .+|+++|+|+++++.|+  .++++..+ +.+..+|..+.++. .
T Consensus        99 v~~~~~~~~~-~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~  177 (271)
T d1nv8a_          99 VELALELIRK-YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKF  177 (271)
T ss_dssp             HHHHHHHHHH-HTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGT
T ss_pred             hhhhhhhhcc-ccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccccccc
Confidence            3344444433 456799999 99999998888654 58999999999999996  66777765 77888888765543 3


Q ss_pred             CCccEEEEcCCCC-----------CchH---------------HHHhccccCcEEEEEecCC
Q psy8015          88 GPYDAIHVGAAYP-----------RYPE---------------IFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        88 ~~fD~I~i~~~~~-----------~~p~---------------~l~~~LkpgG~lvi~~~~~  123 (165)
                      ++||.|+++..+-           +-|.               -+.+.|+|||.+++-++..
T Consensus       178 ~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~  239 (271)
T d1nv8a_         178 ASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED  239 (271)
T ss_dssp             TTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT
T ss_pred             CcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHH
Confidence            6899999985421           1121               1457799999999988753

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=99.00  E-value=5.1e-10  Score=85.52  Aligned_cols=70  Identities=13%  Similarity=0.020  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA   82 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~   82 (165)
                      ....++++.+. ..++++|||| ||+|.+|..|++.+.+|+++|+|+++++..+.+..+.+|++++++|+..
T Consensus         8 ~i~~~iv~~~~-~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~   78 (235)
T d1qama_           8 HNIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQ   78 (235)
T ss_dssp             HHHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGG
T ss_pred             HHHHHHHHhcC-CCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcccchhhhhhhhhh
Confidence            34566777764 4799999999 9999999999999999999999999999987444456799999999976

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.96  E-value=6.8e-10  Score=81.52  Aligned_cols=113  Identities=6%  Similarity=0.031  Sum_probs=79.9

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCCCC--CeEEEEccCCCC
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SSTIDPD--HDYDLIADGRAS   83 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~~--nV~~~~gD~~~~   83 (165)
                      -+..-..+..+|...-.+.+|||+ ||||.++.+.... +.+|+.+|.|.+.++..+  ++.++..  +..++..|+.+.
T Consensus        27 ~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~  106 (183)
T d2ifta1          27 GDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDF  106 (183)
T ss_dssp             -CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHH
T ss_pred             cHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccccccccccccccc
Confidence            344455566666432368899999 9999999776654 579999999999999885  6666654  367777775432


Q ss_pred             C---CCCCCccEEEEcCCCCCch-----HHH--HhccccCcEEEEEecC
Q psy8015          84 F---GDNGPYDAIHVGAAYPRYP-----EIF--IHHLKSGGRLVIPIGD  122 (165)
Q Consensus        84 ~---~~~~~fD~I~i~~~~~~~p-----~~l--~~~LkpgG~lvi~~~~  122 (165)
                      +   ....+||+||++..+..-.     +.+  ..+|+++|.+++-...
T Consensus       107 l~~~~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         107 LKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             TTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             ccccccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence            2   2245799999998876421     222  3479999999886543

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.6e-10  Score=87.23  Aligned_cols=97  Identities=10%  Similarity=-0.037  Sum_probs=66.3

Q ss_pred             CCCCeEEEE-ccccHHHHH-HhccCCcEEEEeCCHHHHHhcc--cccCC-CCC---------------------------
Q psy8015          25 SKRLDCLAL-TSNTKQSTT-LPTFIPNSFNINVYYYLSGGPL--SSTID-PDH---------------------------   72 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~-la~~~~~V~aiD~~~~~~~~A~--~~~~~-~~n---------------------------   72 (165)
                      .++.++||+ ||+|..+.. +++.+.+|+++|+++.|++.|+  +++.. .-+                           
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  132 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence            358899999 999977754 4456779999999999999996  22211 101                           


Q ss_pred             --eEEEEccCCCCC------CCCCCccEEEEcCCCCCch----------HHHHhccccCcEEEEEec
Q psy8015          73 --DYDLIADGRASF------GDNGPYDAIHVGAAYPRYP----------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        73 --V~~~~gD~~~~~------~~~~~fD~I~i~~~~~~~p----------~~l~~~LkpgG~lvi~~~  121 (165)
                        -.....|..+..      ...+.||+|++....++++          ..+.++|||||.|++.-.
T Consensus       133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~  199 (263)
T d2g72a1         133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA  199 (263)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence              123344543211      1235799999987776543          246789999999988543

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.93  E-value=1.7e-10  Score=88.73  Aligned_cols=86  Identities=12%  Similarity=-0.060  Sum_probs=66.7

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCcc
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYD   91 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD   91 (165)
                      ...++++.+. ..++++|||| ||+|.+|..|++.+.+|+++|+|+++++.++.+..+.+|++++++|+.+...+...++
T Consensus        17 ii~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~~   95 (245)
T d1yuba_          17 VLNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY   95 (245)
T ss_dssp             THHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE
T ss_pred             HHHHHHHhcC-CCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccceee
Confidence            4567888874 4789999999 9999999999999999999999999999886433345789999999976333334555


Q ss_pred             EEEEcCCC
Q psy8015          92 AIHVGAAY   99 (165)
Q Consensus        92 ~I~i~~~~   99 (165)
                      .|+.+-.+
T Consensus        96 ~vv~NLPY  103 (245)
T d1yuba_          96 KIVGNIPY  103 (245)
T ss_dssp             EEEEECCS
T ss_pred             eEeeeeeh
Confidence            55544333

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.90  E-value=1.5e-09  Score=86.16  Aligned_cols=106  Identities=15%  Similarity=0.052  Sum_probs=81.6

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCC
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGP   89 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~   89 (165)
                      .+...+...++|++|||+ +|.|.=|..++.+.   +.+++.|.++..++..+  ++++|..|+.+...|+.........
T Consensus       106 ~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~  185 (313)
T d1ixka_         106 MYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVE  185 (313)
T ss_dssp             HHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCC
T ss_pred             cchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccccccccc
Confidence            333344445899999999 99999999998875   47999999999999874  7888999999998887654333568


Q ss_pred             ccEEEEcCCCC------CchH----------------------HHHhccccCcEEEEEec
Q psy8015          90 YDAIHVGAAYP------RYPE----------------------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        90 fD~I~i~~~~~------~~p~----------------------~l~~~LkpgG~lvi~~~  121 (165)
                      ||.|++++.+.      .-|+                      ...+.|||||+||...-
T Consensus       186 fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTC  245 (313)
T d1ixka_         186 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC  245 (313)
T ss_dssp             EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             ccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeec
Confidence            99999987653      1121                      24689999999988764

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=1.5e-09  Score=84.98  Aligned_cols=108  Identities=15%  Similarity=0.135  Sum_probs=81.0

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCC-CCCCC
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRA-SFGDN   87 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~-~~~~~   87 (165)
                      ...+...+....++++|||+ +|.|.=|..++.+.  ++|+|.|+++..++..+  ++++|.+|+.....|... .....
T Consensus        90 sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~  169 (284)
T d1sqga2          90 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGE  169 (284)
T ss_dssp             HHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTT
T ss_pred             cccccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhccc
Confidence            33333444456899999999 99999999998876  67999999999999885  788899887777666542 12234


Q ss_pred             CCccEEEEcCCCC------CchH----------------------HHHhccccCcEEEEEec
Q psy8015          88 GPYDAIHVGAAYP------RYPE----------------------IFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        88 ~~fD~I~i~~~~~------~~p~----------------------~l~~~LkpgG~lvi~~~  121 (165)
                      +.||.|++++.+.      .-|+                      ...+.|||||+||...-
T Consensus       170 ~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTC  231 (284)
T d1sqga2         170 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC  231 (284)
T ss_dssp             CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             ccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence            6799999997664      1221                      24578999999999764

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.84  E-value=1.3e-09  Score=86.23  Aligned_cols=107  Identities=20%  Similarity=0.132  Sum_probs=76.4

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC-------CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCC
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI-------PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRA   82 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~-------~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~   82 (165)
                      ...++++.+....++.+|||. ||+|.+...+.+..       .+++++|+++.+++.|+  ....+ .+..+.++|...
T Consensus       104 ~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~-~~~~~~~~d~~~  182 (328)
T d2f8la1         104 IVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-QKMTLLHQDGLA  182 (328)
T ss_dssp             HHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-CCCEEEESCTTS
T ss_pred             HHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh-hhhhhhcccccc
Confidence            344454444444678899999 99999887775421       26999999999999996  22223 357788888765


Q ss_pred             CCCCCCCccEEEEcCCCCCc------------------------hHHHHhccccCcEEEEEec
Q psy8015          83 SFGDNGPYDAIHVGAAYPRY------------------------PEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        83 ~~~~~~~fD~I~i~~~~~~~------------------------p~~l~~~LkpgG~lvi~~~  121 (165)
                      ..+ ..+||+|+.+......                        .+...+.|+|||++++.++
T Consensus       183 ~~~-~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p  244 (328)
T d2f8la1         183 NLL-VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP  244 (328)
T ss_dssp             CCC-CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccc-cccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence            433 4689999998765311                        1246799999999988775

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.84  E-value=2.6e-09  Score=83.24  Aligned_cols=98  Identities=14%  Similarity=0.112  Sum_probs=75.3

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhcc-CCcEEEEeCCHHHHHhcc--ccc----------CCCCCeEEEEccCCCCCCCCCC
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTF-IPNSFNINVYYYLSGGPL--SST----------IDPDHDYDLIADGRASFGDNGP   89 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~----------~~~~nV~~~~gD~~~~~~~~~~   89 (165)
                      +.+.++||.+ .|.|..+..+.+. ..+|+.+|+|+++++.|+  +..          ..-++++++.+|+..-+...++
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~  149 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  149 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence            4677999999 9999988876654 468999999999999997  221          1235799999999754444578


Q ss_pred             ccEEEEcCCCCC-ch---------HHHHhccccCcEEEEEec
Q psy8015          90 YDAIHVGAAYPR-YP---------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        90 fD~I~i~~~~~~-~p---------~~l~~~LkpgG~lvi~~~  121 (165)
                      ||+|+++...+. .+         +.+.+.|+|||.+++..+
T Consensus       150 yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~  191 (276)
T d1mjfa_         150 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG  191 (276)
T ss_dssp             EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecC
Confidence            999999876542 11         357899999999999765

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=6.7e-09  Score=81.48  Aligned_cols=78  Identities=6%  Similarity=-0.072  Sum_probs=64.7

Q ss_pred             cCCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCC---CCCccEE
Q psy8015          23 GHSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGD---NGPYDAI   93 (165)
Q Consensus        23 ~~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~---~~~fD~I   93 (165)
                      ...+|++|||+ +|.|.-|..+|.+.   ++|+|+|+++..++..+  ++++|.+|+++...|+....+.   .+.||.|
T Consensus        91 ~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~V  170 (293)
T d2b9ea1          91 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYI  170 (293)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEE
T ss_pred             CCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEE
Confidence            44899999999 99999999988763   57999999999998875  7889999999999998653222   3679999


Q ss_pred             EEcCCCC
Q psy8015          94 HVGAAYP  100 (165)
Q Consensus        94 ~i~~~~~  100 (165)
                      ++++.+.
T Consensus       171 L~DaPCS  177 (293)
T d2b9ea1         171 LLDPSCS  177 (293)
T ss_dssp             EECCCCC
T ss_pred             eecCccc
Confidence            9997643

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.76  E-value=6e-09  Score=82.55  Aligned_cols=98  Identities=16%  Similarity=0.211  Sum_probs=75.0

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cc-----cCCCCCeEEEEccCCCCCC-CCCCccE
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SS-----TIDPDHDYDLIADGRASFG-DNGPYDA   92 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~-----~~~~~nV~~~~gD~~~~~~-~~~~fD~   92 (165)
                      +...++||.| .|.|..+..+.+.-  .+|+.+|+++++++.|+  +.     ...-++++++.+|+.+-+. ...+||+
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence            4567899999 99999998887653  58999999999999996  32     1234579999999976332 2467999


Q ss_pred             EEEcCCCC---C-ch---------HHHHhccccCcEEEEEec
Q psy8015          93 IHVGAAYP---R-YP---------EIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        93 I~i~~~~~---~-~p---------~~l~~~LkpgG~lvi~~~  121 (165)
                      |+++...+   . .+         +.+.+.|+|||.+++..+
T Consensus       155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~  196 (312)
T d1uira_         155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG  196 (312)
T ss_dssp             EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence            99986432   1 11         357899999999998664

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=6.8e-09  Score=79.93  Aligned_cols=70  Identities=7%  Similarity=-0.062  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA   82 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~   82 (165)
                      ....++++.+. ..+++.|||| +|+|++|..|++.+.+|+++|+|+++++..+.+....+|++++.+|+..
T Consensus         8 ~~~~~Iv~~~~-~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~   78 (252)
T d1qyra_           8 FVIDSIVSAIN-PQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMT   78 (252)
T ss_dssp             HHHHHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGG
T ss_pred             HHHHHHHHhcC-CCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhccchhHHhhhhhh
Confidence            45667888885 4789999999 9999999999999999999999999999886433345689999999975

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.72  E-value=2.2e-08  Score=77.87  Aligned_cols=98  Identities=13%  Similarity=0.104  Sum_probs=76.9

Q ss_pred             CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--c----ccCCCCCeEEEEccCCCCCC-CCCCccEEE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--S----STIDPDHDYDLIADGRASFG-DNGPYDAIH   94 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~----~~~~~~nV~~~~gD~~~~~~-~~~~fD~I~   94 (165)
                      ...++||-| .|.|..+..+.+.  ..+|+.+|+|+++++.|+  +    ..+.-++++++.+|+..-+. ...+||+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            567999999 9999999998875  469999999999999996  3    22344679999999976332 246899999


Q ss_pred             EcCCCCCc----------hHHHHhccccCcEEEEEecC
Q psy8015          95 VGAAYPRY----------PEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        95 i~~~~~~~----------p~~l~~~LkpgG~lvi~~~~  122 (165)
                      ++...+.-          -+.+.+.|+|||.++...+.
T Consensus       154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s  191 (274)
T d1iy9a_         154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (274)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence            99655421          14678999999999987653

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.72  E-value=3.1e-08  Score=75.27  Aligned_cols=104  Identities=14%  Similarity=0.020  Sum_probs=73.7

Q ss_pred             hHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC------CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC
Q psy8015          11 SGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI------PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS   83 (165)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~------~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~   83 (165)
                      |...+.+-+++.. .+.++|||| ++.|+.+.+++...      ++|+++|+++.....++   ...++++++.+|..+.
T Consensus        66 p~d~~~~~eli~~-~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~---~~~~~I~~i~gDs~~~  141 (232)
T d2bm8a1          66 PDTQAVYHDMLWE-LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA---SDMENITLHQGDCSDL  141 (232)
T ss_dssp             HHHHHHHHHHHHH-HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG---GGCTTEEEEECCSSCS
T ss_pred             HHHHHHHHHHHHH-hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh---ccccceeeeecccccH
Confidence            3445566666655 356899999 99999998888643      68999999987655443   2246899999997542


Q ss_pred             C--C--CCCCccEEEEcCCCCCch---H-HHHhccccCcEEEE
Q psy8015          84 F--G--DNGPYDAIHVGAAYPRYP---E-IFIHHLKSGGRLVI  118 (165)
Q Consensus        84 ~--~--~~~~fD~I~i~~~~~~~p---~-~l~~~LkpgG~lvi  118 (165)
                      .  .  ....+|.||++++-....   + .+.+.|++||.+++
T Consensus       142 ~~~~~l~~~~~dlIfID~~H~~~~v~~~~~~~~lLk~GG~iIv  184 (232)
T d2bm8a1         142 TTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFII  184 (232)
T ss_dssp             GGGGGGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEE
T ss_pred             HHHHHHHhcCCCEEEEcCCcchHHHHHHHHHhcccCcCCEEEE
Confidence            1  1  134689999998733221   1 35689999999887

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.69  E-value=1.9e-08  Score=79.06  Aligned_cols=99  Identities=14%  Similarity=0.136  Sum_probs=74.5

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cc----cCCCCCeEEEEccCCCCCC-CCCCccEE
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SS----TIDPDHDYDLIADGRASFG-DNGPYDAI   93 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~----~~~~~nV~~~~gD~~~~~~-~~~~fD~I   93 (165)
                      +...++||-| .|.|..+..+.+.  ..+|+.+|+|+++++.|+  +.    .+.-++++++.+|+.+-+. ..++||+|
T Consensus        87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  166 (295)
T d1inla_          87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI  166 (295)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred             CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence            3556899999 9999999888875  368999999999999996  22    2234679999999976332 24689999


Q ss_pred             EEcCCCCC-ch----------HHHHhccccCcEEEEEecC
Q psy8015          94 HVGAAYPR-YP----------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        94 ~i~~~~~~-~p----------~~l~~~LkpgG~lvi~~~~  122 (165)
                      +++...+. .|          +.+.+.|+|||++++..+.
T Consensus       167 i~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s  206 (295)
T d1inla_         167 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  206 (295)
T ss_dssp             EEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence            99865542 11          3578999999999997754

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.9e-08  Score=77.63  Aligned_cols=99  Identities=11%  Similarity=0.069  Sum_probs=75.9

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cc----cCCCCCeEEEEccCCCCCC-CCCCccEE
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SS----TIDPDHDYDLIADGRASFG-DNGPYDAI   93 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~----~~~~~nV~~~~gD~~~~~~-~~~~fD~I   93 (165)
                      +...++||-| .|.|..+..+.+.  ..+|+.+|+++++++.|+  +.    ...-++++++.+|+.+-+. ..++||+|
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  155 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence            3566899999 9999999988875  469999999999999996  32    2334679999999876332 34689999


Q ss_pred             EEcCCCCCc-h---------HHHHhccccCcEEEEEecC
Q psy8015          94 HVGAAYPRY-P---------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        94 ~i~~~~~~~-p---------~~l~~~LkpgG~lvi~~~~  122 (165)
                      +++...+.- +         +.+.+.|+|||.+++..+.
T Consensus       156 i~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         156 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             EEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            998654421 1         3578999999999998754

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.66  E-value=3.4e-08  Score=77.36  Aligned_cols=98  Identities=15%  Similarity=0.148  Sum_probs=77.3

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--c----ccCCCCCeEEEEccCCCCCC--CCCCccEE
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--S----STIDPDHDYDLIADGRASFG--DNGPYDAI   93 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~----~~~~~~nV~~~~gD~~~~~~--~~~~fD~I   93 (165)
                      ...++||-| -|.|..+..+.+.-  .+|+.+|+|+++++.|+  +    ....-++++++.+|+.+-+.  ..++||+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            556899999 99999999888753  68999999999999996  3    22335679999999875332  24589999


Q ss_pred             EEcCCCCCch----------HHHHhccccCcEEEEEecC
Q psy8015          94 HVGAAYPRYP----------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        94 ~i~~~~~~~p----------~~l~~~LkpgG~lvi~~~~  122 (165)
                      +++...+.-+          +.+.+.|+|||.++...+.
T Consensus       159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  197 (290)
T d1xj5a_         159 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES  197 (290)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence            9987665322          3578999999999998764

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.62  E-value=3.4e-08  Score=72.73  Aligned_cols=107  Identities=14%  Similarity=0.105  Sum_probs=68.8

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHH----HHHHhcc---CC---cEEEEeCCHHHHHhcc--------cc----------
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQ----STTLPTF---IP---NSFNINVYYYLSGGPL--------SS----------   66 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~----t~~la~~---~~---~V~aiD~~~~~~~~A~--------~~----------   66 (165)
                      .+-+.+....+.-|||++ ||||--    +..+...   .+   +++|.|+|+.+++.|+        .+          
T Consensus        14 ~L~~~~~~~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~y   93 (193)
T d1af7a2          14 ILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRY   93 (193)
T ss_dssp             HHHHHHHHSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHH
T ss_pred             HHHHHHhccCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhc
Confidence            344444343455699999 999963    3334332   11   5999999999999885        11          


Q ss_pred             --cCC-------------CCCeEEEEccCCCC-CCCCCCccEEEEcCCCCCch--------HHHHhccccCcEEEEEecC
Q psy8015          67 --TID-------------PDHDYDLIADGRAS-FGDNGPYDAIHVGAAYPRYP--------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        67 --~~~-------------~~nV~~~~gD~~~~-~~~~~~fD~I~i~~~~~~~p--------~~l~~~LkpgG~lvi~~~~  122 (165)
                        +.+             ...+++...+.... .+..++||+|+|-.....+.        +.+.+.|+|||.|++-..+
T Consensus        94 f~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~sE  173 (193)
T d1af7a2          94 FMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSE  173 (193)
T ss_dssp             EEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred             eeecCCCccceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEecCc
Confidence              000             01244555554432 23357899999998876554        3578999999998875443

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.61  E-value=1.4e-07  Score=72.00  Aligned_cols=98  Identities=12%  Similarity=0.102  Sum_probs=74.5

Q ss_pred             HHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCcc
Q psy8015          15 AKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYD   91 (165)
Q Consensus        15 ~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD   91 (165)
                      ..+++......+..+|+|| ||+|.++..+++...  +++..|+ |+.++.+.    ..++++++.+|..+..|   ..|
T Consensus        70 ~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~----~~~ri~~~~gd~~~~~p---~~D  141 (244)
T d1fp1d2          70 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP----PLSGIEHVGGDMFASVP---QGD  141 (244)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC----CCTTEEEEECCTTTCCC---CEE
T ss_pred             HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccC----CCCCeEEecCCcccccc---cce
Confidence            3455555323567899999 999999999998764  6888887 55665443    23679999999876554   469


Q ss_pred             EEEEcCCCCCchH--------HHHhccccCcEEEEEe
Q psy8015          92 AIHVGAAYPRYPE--------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        92 ~I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~  120 (165)
                      ++++...+++.++        .+.+.|+|||++++..
T Consensus       142 ~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e  178 (244)
T d1fp1d2         142 AMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE  178 (244)
T ss_dssp             EEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            9999988887764        4678999999999965

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=6.5e-08  Score=72.25  Aligned_cols=98  Identities=9%  Similarity=-0.034  Sum_probs=78.1

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      -++++++|+ ||.|+-+..+|=..  .+|+.+|.+.+-+...+  .++++++|++++++.+.+. ....+||+|++-+..
T Consensus        64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~-~~~~~fD~V~sRA~~  142 (207)
T d1jsxa_          64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEF-PSEPPFDGVISRAFA  142 (207)
T ss_dssp             CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTS-CCCSCEEEEECSCSS
T ss_pred             hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhh-ccccccceehhhhhc
Confidence            357899999 99999999998654  48999999999999886  6778999999999998764 345689987665443


Q ss_pred             C--CchHHHHhccccCcEEEEEecCC
Q psy8015         100 P--RYPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus       100 ~--~~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      +  .+.+-..+.++++|+++..-|..
T Consensus       143 ~~~~ll~~~~~~l~~~g~~~~~KG~~  168 (207)
T d1jsxa_         143 SLNDMVSWCHHLPGEQGRFYALKGQM  168 (207)
T ss_dssp             SHHHHHHHHTTSEEEEEEEEEEESSC
T ss_pred             CHHHHHHHHHHhcCCCcEEEEECCCC
Confidence            2  23345678999999999987753

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=6.1e-08  Score=74.22  Aligned_cols=74  Identities=7%  Similarity=-0.116  Sum_probs=58.1

Q ss_pred             CCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCC-eEEEEccCCCCCC------CCCCccEE
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDH-DYDLIADGRASFG------DNGPYDAI   93 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~n-V~~~~gD~~~~~~------~~~~fD~I   93 (165)
                      +..++||+ ||||..+..|+...  -+|+++|+++++++.|+  .+..++.+ +.+++.+....+.      ..++||.|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i  140 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  140 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence            34689999 99999999998764  58999999999999996  66667765 8888876543221      23579999


Q ss_pred             EEcCCC
Q psy8015          94 HVGAAY   99 (165)
Q Consensus        94 ~i~~~~   99 (165)
                      +++..+
T Consensus       141 vsNPPY  146 (250)
T d2h00a1         141 MCNPPF  146 (250)
T ss_dssp             EECCCC
T ss_pred             EecCcc
Confidence            998655

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.60  E-value=3e-08  Score=78.43  Aligned_cols=99  Identities=13%  Similarity=0.062  Sum_probs=75.5

Q ss_pred             CCCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--ccc----CCCCCeEEEEccCCCCCC-CCCCccEE
Q psy8015          24 HSKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SST----IDPDHDYDLIADGRASFG-DNGPYDAI   93 (165)
Q Consensus        24 ~~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~----~~~~nV~~~~gD~~~~~~-~~~~fD~I   93 (165)
                      +...++||-| .|.|..+..+.+.-  .+|+.+|+|+++++.|+  +..    +.-++++++.+|+.+-+. ...+||+|
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI  183 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI  183 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence            4567899999 99999998888754  69999999999999996  322    234679999999976332 24689999


Q ss_pred             EEcCCCCCch----------HHHHhccccCcEEEEEecC
Q psy8015          94 HVGAAYPRYP----------EIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        94 ~i~~~~~~~p----------~~l~~~LkpgG~lvi~~~~  122 (165)
                      +++...+.-+          +.+.+.|+|||.++...+.
T Consensus       184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s  222 (312)
T d2b2ca1         184 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES  222 (312)
T ss_dssp             EECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred             EEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence            9987654221          3578899999999997653

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.59  E-value=1.1e-07  Score=70.12  Aligned_cols=99  Identities=16%  Similarity=0.064  Sum_probs=69.6

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhcc---CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCC
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTF---IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGP   89 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~---~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~   89 (165)
                      ...|++++ ...++++|||. ||+|.+...+.+.   ..+++++|+++.+++.++       +..++++|.... .....
T Consensus         8 ~~~m~~l~-~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~-------~~~~~~~~~~~~-~~~~~   78 (223)
T d2ih2a1           8 VDFMVSLA-EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP-------WAEGILADFLLW-EPGEA   78 (223)
T ss_dssp             HHHHHHHC-CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT-------TEEEEESCGGGC-CCSSC
T ss_pred             HHHHHHhc-CCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc-------cceeeeeehhcc-ccccc
Confidence            34455555 45789999999 9999988776643   246999999998765442       356677886543 33468


Q ss_pred             ccEEEEcCCCCCc-----------------------------------hHHHHhccccCcEEEEEec
Q psy8015          90 YDAIHVGAAYPRY-----------------------------------PEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        90 fD~I~i~~~~~~~-----------------------------------p~~l~~~LkpgG~lvi~~~  121 (165)
                      ||.++.+......                                   .+...+.|+|||++++.+.
T Consensus        79 fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p  145 (223)
T d2ih2a1          79 FDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP  145 (223)
T ss_dssp             EEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence            9999987554210                                   0134688999999988864

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.59  E-value=8.6e-08  Score=70.21  Aligned_cols=106  Identities=10%  Similarity=-0.056  Sum_probs=81.3

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC---C--CC
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS---F--GD   86 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~---~--~~   86 (165)
                      +....+++|. ..+++.++|. +|.|..|..+....++|+|+|+++++++.|+..  ..+++.+++++-.+.   +  ..
T Consensus         6 ll~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~--~~~~~~~~~~~f~~~~~~l~~~~   82 (182)
T d1wg8a2           6 LYQEALDLLA-VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL--HLPGLTVVQGNFRHLKRHLAALG   82 (182)
T ss_dssp             THHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHT--CCTTEEEEESCGGGHHHHHHHTT
T ss_pred             HHHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhc--cccceeEeehHHHHHHHHHHHcC
Confidence            5667788885 4899999999 999988877777778999999999999998632  235899999885431   1  12


Q ss_pred             CCCccEEEEcCCCCCc---------------hHHHHhccccCcEEEEEec
Q psy8015          87 NGPYDAIHVGAAYPRY---------------PEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        87 ~~~fD~I~i~~~~~~~---------------p~~l~~~LkpgG~lvi~~~  121 (165)
                      .+.+|.|+.+-++...               .+...+.|+|||++++..-
T Consensus        83 ~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f  132 (182)
T d1wg8a2          83 VERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF  132 (182)
T ss_dssp             CSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence            3679999999877522               1345688999999998754

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.5e-07  Score=71.89  Aligned_cols=81  Identities=7%  Similarity=-0.101  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccCC-CCCeEEEEccCCCCCCCC
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTID-PDHDYDLIADGRASFGDN   87 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~~-~~nV~~~~gD~~~~~~~~   87 (165)
                      ....++++.+. ..+++.|||| +|.|.+|..|++.+.+|+++|+|+++++..+  +.... ..|++++.+|+.....  
T Consensus         8 ~i~~kIv~~~~-~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~--   84 (278)
T d1zq9a1           8 LIINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL--   84 (278)
T ss_dssp             HHHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC--
T ss_pred             HHHHHHHHHhC-CCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh--
Confidence            45567777764 5789999999 9999999999999999999999999999885  33322 3589999999876322  


Q ss_pred             CCccEEEE
Q psy8015          88 GPYDAIHV   95 (165)
Q Consensus        88 ~~fD~I~i   95 (165)
                      ..++.|+.
T Consensus        85 ~~~~~vV~   92 (278)
T d1zq9a1          85 PFFDTCVA   92 (278)
T ss_dssp             CCCSEEEE
T ss_pred             hhhhhhhc
Confidence            23565554

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.49  E-value=2.2e-07  Score=75.85  Aligned_cols=107  Identities=11%  Similarity=0.071  Sum_probs=77.6

Q ss_pred             HHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC---------------CcEEEEeCCHHHHHhcc----cccCCCCC
Q psy8015          13 AVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI---------------PNSFNINVYYYLSGGPL----SSTIDPDH   72 (165)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~---------------~~V~aiD~~~~~~~~A~----~~~~~~~n   72 (165)
                      .+..|++++. ..++.+|+|- ||||.+...+.+..               ..++++|+++.+...|+    +...+..+
T Consensus       150 Iv~~mv~ll~-~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~  228 (425)
T d2okca1         150 LIQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR  228 (425)
T ss_dssp             HHHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred             hhHhhheecc-CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcccc
Confidence            3455666664 4788999999 99999887766532               25999999999999996    33333345


Q ss_pred             eEEEEccCCCCCCCCCCccEEEEcCCCCC-----------------------chHHHHhccccCcEEEEEec
Q psy8015          73 DYDLIADGRASFGDNGPYDAIHVGAAYPR-----------------------YPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        73 V~~~~gD~~~~~~~~~~fD~I~i~~~~~~-----------------------~p~~l~~~LkpgG~lvi~~~  121 (165)
                      ..+..+|..... ....||+|+.+.....                       ....+.+.|++||+++++++
T Consensus       229 ~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p  299 (425)
T d2okca1         229 SPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  299 (425)
T ss_dssp             CSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence            678888876543 3468999999865531                       11246799999999988854

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.28  E-value=2.4e-06  Score=64.84  Aligned_cols=88  Identities=8%  Similarity=0.015  Sum_probs=68.8

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR  101 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~  101 (165)
                      ....+|+|| +|+|..+..+++...  +++..|. |+.++.+..    .++|+++.+|..+..+   .+|++++...+++
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~----~~rv~~~~gD~f~~~p---~aD~~~l~~vLHd  150 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG----SNNLTYVGGDMFTSIP---NADAVLLKYILHN  150 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----BTTEEEEECCTTTCCC---CCSEEEEESCGGG
T ss_pred             cCceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCcc----cCceEEEecCcccCCC---CCcEEEEEeeccc
Confidence            356889999 999999999998863  7899998 566665532    3579999999876543   5899999998887


Q ss_pred             chH--------HHHhccccC---cEEEEEe
Q psy8015         102 YPE--------IFIHHLKSG---GRLVIPI  120 (165)
Q Consensus       102 ~p~--------~l~~~Lkpg---G~lvi~~  120 (165)
                      .++        .+.+.|+||   |++++..
T Consensus       151 w~d~~~~~iL~~~~~al~pgg~~~~lli~e  180 (244)
T d1fp2a2         151 WTDKDCLRILKKCKEAVTNDGKRGKVTIID  180 (244)
T ss_dssp             SCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             CChHHHHHHHHHHHHHcCcccCCcEEEEEE
Confidence            664        467889998   7777753

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.26  E-value=3.2e-06  Score=63.90  Aligned_cols=97  Identities=12%  Similarity=0.099  Sum_probs=70.0

Q ss_pred             HHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccE
Q psy8015          16 KYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDA   92 (165)
Q Consensus        16 ~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~   92 (165)
                      .+++......+..+|+|| ||+|.++..+++...  +++..|+-+ .++.++.    .++++++.+|..+.+|.   .|.
T Consensus        71 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~~----~~r~~~~~~d~~~~~P~---ad~  142 (243)
T d1kyza2          71 KILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAPS----YPGVEHVGGDMFVSIPK---ADA  142 (243)
T ss_dssp             HHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCCC----CTTEEEEECCTTTCCCC---CSC
T ss_pred             HHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhccc----CCceEEecccccccCCC---cce
Confidence            344443322346789999 999999999998864  789999854 4443332    35799999998776553   577


Q ss_pred             EEEcCCCCCchH--------HHHhccccCcEEEEEe
Q psy8015          93 IHVGAAYPRYPE--------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        93 I~i~~~~~~~p~--------~l~~~LkpgG~lvi~~  120 (165)
                      .++....+..++        .+.+.|+|||++++..
T Consensus       143 ~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d  178 (243)
T d1kyza2         143 VFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAE  178 (243)
T ss_dssp             EECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred             EEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence            777777775543        5789999999998863

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.23  E-value=3.8e-07  Score=69.77  Aligned_cols=74  Identities=7%  Similarity=-0.037  Sum_probs=58.6

Q ss_pred             CCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc--cccC----C-----CCCeEEEEccCCCCCCC-CCCccEE
Q psy8015          27 RLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL--SSTI----D-----PDHDYDLIADGRASFGD-NGPYDAI   93 (165)
Q Consensus        27 ~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~--~~~~----~-----~~nV~~~~gD~~~~~~~-~~~fD~I   93 (165)
                      ..+|||. +|.|.-+..+|.++.+|+++|.++.+....+  ++++    .     ..|++++++|+.+-+.. ..+||+|
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvI  168 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV  168 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred             CCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEE
Confidence            3589999 9999999999999999999999998877653  2211    1     24799999998664432 4579999


Q ss_pred             EEcCCCC
Q psy8015          94 HVGAAYP  100 (165)
Q Consensus        94 ~i~~~~~  100 (165)
                      +++..++
T Consensus       169 YlDPMFp  175 (250)
T d2oyra1         169 YLDPMFP  175 (250)
T ss_dssp             EECCCCC
T ss_pred             EECCCCc
Confidence            9998876

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.17  E-value=1.2e-06  Score=66.46  Aligned_cols=98  Identities=9%  Similarity=-0.033  Sum_probs=76.8

Q ss_pred             CCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC---CCCCCccEEEEcC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF---GDNGPYDAIHVGA   97 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~---~~~~~fD~I~i~~   97 (165)
                      .+.+++|| ||.|+-+..+|=..  .+|+-+|.+.+-+...+  .++++++|++++++.+....   ...++||+|++-+
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA  149 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence            46799999 99999999998654  48999999999988876  67789999999998875421   1236899888765


Q ss_pred             CCC--CchHHHHhccccCcEEEEEecCC
Q psy8015          98 AYP--RYPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        98 ~~~--~~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      ..+  .+.+-....+++||++++.-|..
T Consensus       150 va~l~~ll~~~~~~l~~~g~~i~~KG~~  177 (239)
T d1xdza_         150 VARLSVLSELCLPLVKKNGLFVALKAAS  177 (239)
T ss_dssp             CSCHHHHHHHHGGGEEEEEEEEEEECC-
T ss_pred             hhCHHHHHHHHhhhcccCCEEEEECCCC
Confidence            443  34456689999999999988764

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.13  E-value=1.2e-06  Score=70.53  Aligned_cols=98  Identities=7%  Similarity=-0.093  Sum_probs=71.8

Q ss_pred             CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcc--cccCCC---------------CCeEEEEccCCCCC
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPL--SSTIDP---------------DHDYDLIADGRASF   84 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~--~~~~~~---------------~nV~~~~gD~~~~~   84 (165)
                      .++.+|||. ||||..+...|.-  ..+|++.|+|++.++.++  ++..+.               .++.+.+.|+...+
T Consensus        44 ~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~  123 (375)
T d2dula1          44 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  123 (375)
T ss_dssp             HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             hCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence            367899999 9999999977763  358999999999999995  322222               24677778875433


Q ss_pred             C-CCCCccEEEEcCCCC--CchHHHHhccccCcEEEEEecC
Q psy8015          85 G-DNGPYDAIHVGAAYP--RYPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        85 ~-~~~~fD~I~i~~~~~--~~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      . ....||+|.++.--.  .+.+..++.++.||.|.+...+
T Consensus       124 ~~~~~~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~vTaTD  164 (375)
T d2dula1         124 AERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATD  164 (375)
T ss_dssp             HHSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             HhhcCcCCcccCCCCCCcHHHHHHHHHHhccCCEEEEEecC
Confidence            2 235799999985332  2346677889999999997654

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=3.2e-06  Score=61.40  Aligned_cols=101  Identities=16%  Similarity=0.072  Sum_probs=75.2

Q ss_pred             hHHHHHHHHHHhc---CCCCCeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC
Q psy8015          11 SGAVAKYVTYLSG---HSKRLDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS   83 (165)
Q Consensus        11 ~~~~~~~l~~l~~---~~~~~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~   83 (165)
                      +++.=+|+|....   .+++.+|||+ |+.|.++..+++..   ++|+++|+.+       .+  ..+++.++.+|....
T Consensus         4 sRaafKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~-------~~--~i~~~~~~~~d~~~~   74 (180)
T d1ej0a_           4 SRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-------MD--PIVGVDFLQGDFRDE   74 (180)
T ss_dssp             CHHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-------CC--CCTTEEEEESCTTSH
T ss_pred             hHHHHHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc-------cc--ccCCceEeecccccc
Confidence            5667778777654   3689999999 99999999888754   6799999865       11  367899999997542


Q ss_pred             C--------CCCCCccEEEEcCCCCC--ch--H-------------HHHhccccCcEEEEEe
Q psy8015          84 F--------GDNGPYDAIHVGAAYPR--YP--E-------------IFIHHLKSGGRLVIPI  120 (165)
Q Consensus        84 ~--------~~~~~fD~I~i~~~~~~--~p--~-------------~l~~~LkpgG~lvi~~  120 (165)
                      .        ....+||+|+.+++...  ..  +             -..+.|++||.+|+=+
T Consensus        75 ~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~  136 (180)
T d1ej0a_          75 LVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV  136 (180)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence            1        12368999999988752  11  1             2468999999999954

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=3.9e-06  Score=70.09  Aligned_cols=107  Identities=8%  Similarity=0.048  Sum_probs=70.2

Q ss_pred             HHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccC--------------------CcEEEEeCCHHHHHhcc--cccCCC
Q psy8015          14 VAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFI--------------------PNSFNINVYYYLSGGPL--SSTIDP   70 (165)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~--------------------~~V~aiD~~~~~~~~A~--~~~~~~   70 (165)
                      +..|++++ ...++.+|+|- ||||.+...+.+..                    ..++++|+++.+.+.|+  +--++.
T Consensus       153 v~~mv~ll-~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~  231 (524)
T d2ar0a1         153 IKTIIHLL-KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI  231 (524)
T ss_dssp             HHHHHHHH-CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred             hHhhhhcc-cCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcc
Confidence            34455555 44789999999 99998876554421                    25899999999999986  222232


Q ss_pred             C-----CeEEEEccCCC-CCCCCCCccEEEEcCCCCC--------------------chHHHHhccccCcEEEEEec
Q psy8015          71 D-----HDYDLIADGRA-SFGDNGPYDAIHVGAAYPR--------------------YPEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus        71 ~-----nV~~~~gD~~~-~~~~~~~fD~I~i~~~~~~--------------------~p~~l~~~LkpgG~lvi~~~  121 (165)
                      +     +-.+..++... .......||+|+.+..+..                    ....+.+.|+|||++.++++
T Consensus       232 ~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP  308 (524)
T d2ar0a1         232 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP  308 (524)
T ss_dssp             CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEe
Confidence            1     12344555432 1122357999999865531                    12356799999999988854

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.92  E-value=1.7e-06  Score=61.62  Aligned_cols=93  Identities=17%  Similarity=0.148  Sum_probs=62.6

Q ss_pred             cCCCCCeEEEE-cc-ccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEc--cCCCCCCCCCCccEEEEcC
Q psy8015          23 GHSKRLDCLAL-TS-NTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIA--DGRASFGDNGPYDAIHVGA   97 (165)
Q Consensus        23 ~~~~~~~vLei-~G-sG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g--D~~~~~~~~~~fD~I~i~~   97 (165)
                      ..+|+++||-+ +| .|.++..+++.. .+|+++|.+++.++.|+  ++|.+.  ++.-  +........+.||.++...
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~--~lGa~~--~i~~~~~~~~~~~~~~~~d~vi~~~   99 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAM--KMGADH--YIATLEEGDWGEKYFDTFDLIVVCA   99 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH--HHTCSE--EEEGGGTSCHHHHSCSCEEEEEECC
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhh--ccCCcE--EeeccchHHHHHhhhcccceEEEEe
Confidence            45899999999 65 677788887654 58999999999988885  345442  2221  1111111235799988864


Q ss_pred             CCC--CchHHHHhccccCcEEEEE
Q psy8015          98 AYP--RYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        98 ~~~--~~p~~l~~~LkpgG~lvi~  119 (165)
                      +..  ...+...+.|+|+|+++..
T Consensus       100 ~~~~~~~~~~~~~~l~~~G~iv~~  123 (168)
T d1piwa2         100 SSLTDIDFNIMPKAMKVGGRIVSI  123 (168)
T ss_dssp             SCSTTCCTTTGGGGEEEEEEEEEC
T ss_pred             cCCccchHHHHHHHhhccceEEEe
Confidence            432  2235567999999998874

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.78  E-value=0.00012  Score=55.46  Aligned_cols=112  Identities=10%  Similarity=-0.056  Sum_probs=75.4

Q ss_pred             CCchHHHHHHHHHHhcC--CCCCeEEEE-ccccHHHHHHhccC--CcEEEEeCCHHHHHhcc-cccCCCCCeEEEEccCC
Q psy8015           8 GSVSGAVAKYVTYLSGH--SKRLDCLAL-TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPL-SSTIDPDHDYDLIADGR   81 (165)
Q Consensus         8 ~~~~~~~~~~l~~l~~~--~~~~~vLei-~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~-~~~~~~~nV~~~~gD~~   81 (165)
                      +-+|+...++.+.....  .|+.+|+|+ ||.|..+..++...  ..|.++++--+..+.-. ....+-+-+++...+..
T Consensus        46 ~~~SR~~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv  125 (257)
T d2p41a1          46 HAVSRGSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDV  125 (257)
T ss_dssp             CCSSTHHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCT
T ss_pred             CCcchHHHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhH
Confidence            34678888888876543  688899999 99999999999774  47888887433222222 22233323677776654


Q ss_pred             CCCCCCCCccEEEEcCCCCCc------------hHHHHhccccCcEEEEEe
Q psy8015          82 ASFGDNGPYDAIHVGAAYPRY------------PEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        82 ~~~~~~~~fD~I~i~~~~~~~------------p~~l~~~LkpgG~lvi~~  120 (165)
                      ..++ ..+.|.|+++.+...-            .+-+.++|+|||-+++=+
T Consensus       126 ~~l~-~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKV  175 (257)
T d2p41a1         126 FFIP-PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV  175 (257)
T ss_dssp             TTSC-CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             HhcC-CCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEE
Confidence            4333 4689999999765321            123468999999888743

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.74  E-value=1.2e-05  Score=57.64  Aligned_cols=93  Identities=5%  Similarity=-0.051  Sum_probs=66.1

Q ss_pred             cCCCCCeEEEE-ccc-cHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCC---C---CCCCCCCccE
Q psy8015          23 GHSKRLDCLAL-TSN-TKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR---A---SFGDNGPYDA   92 (165)
Q Consensus        23 ~~~~~~~vLei-~Gs-G~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~---~---~~~~~~~fD~   92 (165)
                      ..+|+++||=+ +|. |.++..+++..+  +|+++|.+++..+.|+  ++|.+.  ++.-+..   +   .......||+
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~--~lGa~~--~i~~~~~~~~~~v~~~t~g~G~D~   99 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK--FYGATD--ILNYKNGHIEDQVMKLTNGKGVDR   99 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH--HHTCSE--EECGGGSCHHHHHHHHTTTSCEEE
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHH--hhCccc--cccccchhHHHHHHHHhhccCcce
Confidence            56899999988 665 788888888764  7999999999999885  334432  2211110   0   1112245999


Q ss_pred             EEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          93 IHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        93 I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ||-....+...+...+.|+|+|++++.
T Consensus       100 vid~~g~~~~~~~a~~~~~~~G~iv~~  126 (174)
T d1jqba2         100 VIMAGGGSETLSQAVKMVKPGGIISNI  126 (174)
T ss_dssp             EEECSSCTTHHHHHHHHEEEEEEEEEC
T ss_pred             EEEccCCHHHHHHHHHHHhcCCEEEEE
Confidence            988777777777778999999999884

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.70  E-value=0.00012  Score=51.37  Aligned_cols=94  Identities=10%  Similarity=-0.060  Sum_probs=62.5

Q ss_pred             cCCCCCeEEEE-cc-ccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC---------CCCCCc
Q psy8015          23 GHSKRLDCLAL-TS-NTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF---------GDNGPY   90 (165)
Q Consensus        23 ~~~~~~~vLei-~G-sG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~---------~~~~~f   90 (165)
                      ..+++++||=+ +| .|.+++.+++.. .+|+++|.+++..+.|+  ++|.+. .+...+.....         .....+
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~--~~ga~~-~~~~~~~~~~~~~~~~~~~~~~g~g~   99 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK--NCGADV-TLVVDPAKEEESSIIERIRSAIGDLP   99 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH--HTTCSE-EEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHH--HcCCcE-EEeccccccccchhhhhhhcccccCC
Confidence            35889999988 55 566677777664 58999999999999886  234322 22211111100         012468


Q ss_pred             cEEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          91 DAIHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        91 D~I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      |+++-....+...+...+.|+|+|+++..
T Consensus       100 D~vid~~g~~~~~~~a~~~~~~~G~iv~~  128 (170)
T d1e3ja2         100 NVTIDCSGNEKCITIGINITRTGGTLMLV  128 (170)
T ss_dssp             SEEEECSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred             ceeeecCCChHHHHHHHHHHhcCCceEEE
Confidence            98877666655566778999999998874

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.61  E-value=3.1e-05  Score=55.41  Aligned_cols=94  Identities=11%  Similarity=-0.102  Sum_probs=64.0

Q ss_pred             cCCCCCeEEEE-cc-ccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEccCC--------CCCCCCCCc
Q psy8015          23 GHSKRLDCLAL-TS-NTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR--------ASFGDNGPY   90 (165)
Q Consensus        23 ~~~~~~~vLei-~G-sG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~--------~~~~~~~~f   90 (165)
                      ..++|++||=+ +| .|.++..+|+..+  +|+++|.+++..+.|+  ++|.+.+ +-..+..        ........|
T Consensus        25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~--~lGa~~v-i~~~~~~~~~~~~~i~~~~~~~g~  101 (182)
T d1vj0a2          25 ESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE--EIGADLT-LNRRETSVEERRKAIMDITHGRGA  101 (182)
T ss_dssp             SCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH--HTTCSEE-EETTTSCHHHHHHHHHHHTTTSCE
T ss_pred             CCCCCCEEEEECCCccchhheecccccccccccccccccccccccc--cccceEE-EeccccchHHHHHHHHHhhCCCCc
Confidence            34789999998 55 4677778887653  7999999999999885  3454321 1111110        001123459


Q ss_pred             cEEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          91 DAIHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        91 D~I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      |+||-....+...+...+.|+|||++++.
T Consensus       102 Dvvid~vG~~~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2         102 DFILEATGDSRALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             EEEEECSSCTTHHHHHHHHEEEEEEEEEC
T ss_pred             eEEeecCCchhHHHHHHHHhcCCCEEEEE
Confidence            99887766666677778999999998764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=8.7e-05  Score=52.42  Aligned_cols=96  Identities=10%  Similarity=-0.020  Sum_probs=63.0

Q ss_pred             cCCCCCeEEEE-cc-ccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC------CCCCCccE
Q psy8015          23 GHSKRLDCLAL-TS-NTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF------GDNGPYDA   92 (165)
Q Consensus        23 ~~~~~~~vLei-~G-sG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~------~~~~~fD~   92 (165)
                      ..+++++||=+ +| .|..+..+++..  .+|+++|.+++.++.|+  ++|.+.+.....+-....      .....+|+
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~--~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dv  100 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK--EIGADLVLQISKESPQEIARKVEGQLGCKPEV  100 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH--HTTCSEEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHH--HhCCcccccccccccccccccccccCCCCceE
Confidence            35789999888 43 345556666554  37999999999999885  345543222111110000      01246899


Q ss_pred             EEEcCCCCCchHHHHhccccCcEEEEEe
Q psy8015          93 IHVGAAYPRYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        93 I~i~~~~~~~p~~l~~~LkpgG~lvi~~  120 (165)
                      ++-....+...+...+.+++||++++.-
T Consensus       101 vid~~G~~~~~~~a~~~~~~gG~iv~~G  128 (171)
T d1pl8a2         101 TIECTGAEASIQAGIYATRSGGTLVLVG  128 (171)
T ss_dssp             EEECSCCHHHHHHHHHHSCTTCEEEECS
T ss_pred             EEeccCCchhHHHHHHHhcCCCEEEEEe
Confidence            8887766666777889999999998853

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.00019  Score=50.45  Aligned_cols=93  Identities=11%  Similarity=0.043  Sum_probs=64.9

Q ss_pred             cCCCCCeEEEE-c-cccHHHHHHhccCC-cEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC-CCCCCCCccEEEEcCC
Q psy8015          23 GHSKRLDCLAL-T-SNTKQSTTLPTFIP-NSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA-SFGDNGPYDAIHVGAA   98 (165)
Q Consensus        23 ~~~~~~~vLei-~-GsG~~t~~la~~~~-~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~-~~~~~~~fD~I~i~~~   98 (165)
                      ..+||++||=+ + |.|.++..+++..+ +++++|.+++-.+.++  ++|.+.  ++..+-.. .......||.++-..+
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~--~lGad~--~i~~~~~~~~~~~~~~~D~vid~~g  102 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK--ALGADE--VVNSRNADEMAAHLKSFDFILNTVA  102 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH--HHTCSE--EEETTCHHHHHTTTTCEEEEEECCS
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHh--ccCCcE--EEECchhhHHHHhcCCCceeeeeee
Confidence            45899999999 4 35777788887665 8889999998887774  345442  22221111 1122357999988777


Q ss_pred             CCCchHHHHhccccCcEEEEE
Q psy8015          99 YPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        99 ~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      .+...+...+.|+++|+++..
T Consensus       103 ~~~~~~~~~~~l~~~G~iv~~  123 (168)
T d1uufa2         103 APHNLDDFTTLLKRDGTMTLV  123 (168)
T ss_dssp             SCCCHHHHHTTEEEEEEEEEC
T ss_pred             cchhHHHHHHHHhcCCEEEEe
Confidence            666666778999999999885

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=0.00034  Score=54.68  Aligned_cols=69  Identities=14%  Similarity=-0.092  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHhcC-----CCCCeEEEE-ccccHHHHHHhcc--CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC
Q psy8015          12 GAVAKYVTYLSGH-----SKRLDCLAL-TSNTKQSTTLPTF--IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR   81 (165)
Q Consensus        12 ~~~~~~l~~l~~~-----~~~~~vLei-~GsG~~t~~la~~--~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~   81 (165)
                      ....++++.+...     ..++.|||| .|.|.+|..|...  ..+|+++|.|+.+.+.-+.. ..-+|++++++|+.
T Consensus        24 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~-~~~~~~~ii~~D~l  100 (322)
T d1i4wa_          24 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAK-FEGSPLQILKRDPY  100 (322)
T ss_dssp             HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHH-TTTSSCEEECSCTT
T ss_pred             HHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh-ccCCCcEEEeCchh
Confidence            4556677766310     246789999 9999999998764  36899999999999987622 22367999999985

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.16  E-value=0.00045  Score=52.34  Aligned_cols=51  Identities=2%  Similarity=-0.082  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL   64 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~   64 (165)
                      ....++++...  .+|+.|||. +|||..+...-.+..+.+++|++++..+.|+
T Consensus       238 ~L~~rlI~~~s--~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~  289 (320)
T d1booa_         238 KLPEFFIRMLT--EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASA  289 (320)
T ss_dssp             HHHHHHHHHHC--CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             HHHHHhhhhcc--cCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHH
Confidence            56788888874  689999999 9999999888888899999999999999995

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.09  E-value=0.00022  Score=51.70  Aligned_cols=97  Identities=5%  Similarity=-0.017  Sum_probs=62.8

Q ss_pred             HHHHhcCCCCCeEEEE-ccc-cHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC------CCCCC
Q psy8015          18 VTYLSGHSKRLDCLAL-TSN-TKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA------SFGDN   87 (165)
Q Consensus        18 l~~l~~~~~~~~vLei-~Gs-G~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~------~~~~~   87 (165)
                      ++.. ..++|++||-+ ||. |..++.+++..  .+|+++|.+++.++.|+  ++|.+.  ++......      .+...
T Consensus        18 ~~~a-~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~--~~Ga~~--~~~~~~~~~~~~i~~~t~g   92 (195)
T d1kola2          18 AVTA-GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK--AQGFEI--ADLSLDTPLHEQIAALLGE   92 (195)
T ss_dssp             HHHT-TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH--HTTCEE--EETTSSSCHHHHHHHHHSS
T ss_pred             HHHh-CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhh--hccccE--EEeCCCcCHHHHHHHHhCC
Confidence            3443 56899999999 877 67777777754  58999999999999885  334321  11111100      01122


Q ss_pred             CCccEEEEcCCCC---------------CchHHHHhccccCcEEEEE
Q psy8015          88 GPYDAIHVGAAYP---------------RYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        88 ~~fD~I~i~~~~~---------------~~p~~l~~~LkpgG~lvi~  119 (165)
                      ..+|+++-....+               ...+...+.++|||++++.
T Consensus        93 ~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          93 PEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             SCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             CCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence            4589888654322               1235678999999999875

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.08  E-value=5.9e-05  Score=52.96  Aligned_cols=97  Identities=9%  Similarity=-0.046  Sum_probs=61.3

Q ss_pred             HHHHhcCCCCCeEEEE--ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC----CCCCCc
Q psy8015          18 VTYLSGHSKRLDCLAL--TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF----GDNGPY   90 (165)
Q Consensus        18 l~~l~~~~~~~~vLei--~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~----~~~~~f   90 (165)
                      +... ..+|+++||=+  .+.|..+..+++.. .+|+++|.+++-++.++  ++|.+.  ++..+..+..    .....+
T Consensus        20 l~~~-~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~--~~Ga~~--~i~~~~~~~~~~~~~~~~g~   94 (166)
T d1llua2          20 LKQT-NARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELAR--KLGASL--TVNARQEDPVEAIQRDIGGA   94 (166)
T ss_dssp             HHHH-TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH--HTTCSE--EEETTTSCHHHHHHHHHSSE
T ss_pred             HHHh-CCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhh--ccCccc--cccccchhHHHHHHHhhcCC
Confidence            4444 45899999998  44566677777765 58999999999998885  345432  2322211110    011234


Q ss_pred             cEEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          91 DAIHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        91 D~I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      |.++.+...+...+...+.|+|||++++.
T Consensus        95 ~~~i~~~~~~~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2          95 HGVLVTAVSNSAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             EEEEECCSCHHHHHHHHTTEEEEEEEEEC
T ss_pred             cccccccccchHHHHHHHHhcCCcEEEEE
Confidence            55555544444456677999999998873

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.07  E-value=3.6e-05  Score=54.82  Aligned_cols=93  Identities=5%  Similarity=-0.019  Sum_probs=62.2

Q ss_pred             cCCCCCeEEEE-cc-ccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC-----CCCCCccEE
Q psy8015          23 GHSKRLDCLAL-TS-NTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF-----GDNGPYDAI   93 (165)
Q Consensus        23 ~~~~~~~vLei-~G-sG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~-----~~~~~fD~I   93 (165)
                      ..+|+++||=+ +| .|..++.+++..  .+|+.+|.+++-++.|+  ++|.+.  ++.-+..+..     ...+.||+|
T Consensus        25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~--~~Ga~~--~i~~~~~~~~~~i~~~t~gg~D~v  100 (174)
T d1f8fa2          25 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK--QLGATH--VINSKTQDPVAAIKEITDGGVNFA  100 (174)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH--HHTCSE--EEETTTSCHHHHHHHHTTSCEEEE
T ss_pred             CCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHH--HcCCeE--EEeCCCcCHHHHHHHHcCCCCcEE
Confidence            35899999988 43 345566666653  46788999999988885  345432  3332221100     012479999


Q ss_pred             EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +-....+...+...+.++|+|++++.
T Consensus       101 id~~G~~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2         101 LESTGSPEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             EECSCCHHHHHHHHHTEEEEEEEEEC
T ss_pred             EEcCCcHHHHHHHHhcccCceEEEEE
Confidence            88777666677778999999999874

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.05  E-value=0.00097  Score=47.30  Aligned_cols=95  Identities=8%  Similarity=-0.076  Sum_probs=65.4

Q ss_pred             cCCCCCeEEEE-ccc-cHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeE-EEEccCC-C---CCCCCCCccEE
Q psy8015          23 GHSKRLDCLAL-TSN-TKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDY-DLIADGR-A---SFGDNGPYDAI   93 (165)
Q Consensus        23 ~~~~~~~vLei-~Gs-G~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~-~~~gD~~-~---~~~~~~~fD~I   93 (165)
                      ..++|++||=+ ||. |.+++.+++..+  +|+++|.+++..+.|+  ++|.+.+- ....|.. .   .....+.+|++
T Consensus        25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~--~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~v  102 (174)
T d1e3ia2          25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK--ALGATDCLNPRELDKPVQDVITELTAGGVDYS  102 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH--HTTCSEEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHH--HhCCCcccCCccchhhhhhhHhhhhcCCCcEE
Confidence            35899999999 776 888888888764  7999999999988885  34543321 1111110 0   00012569999


Q ss_pred             EEcCCCCCchHHHHhccccC-cEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLKSG-GRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~Lkpg-G~lvi~  119 (165)
                      |-....+..-+..++.|++| |++++.
T Consensus       103 ie~~G~~~~~~~a~~~~~~g~G~~v~v  129 (174)
T d1e3ia2         103 LDCAGTAQTLKAAVDCTVLGWGSCTVV  129 (174)
T ss_dssp             EESSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             EEecccchHHHHHHHHhhcCCeEEEec
Confidence            88777666667778999997 998874

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.02  E-value=0.00057  Score=50.32  Aligned_cols=51  Identities=6%  Similarity=-0.068  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL   64 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~   64 (165)
                      ....++++...  .+|+.|||- +|||..+...-++..+-+++|++++.++.|+
T Consensus       200 ~L~~~lI~~~s--~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~  251 (256)
T d1g60a_         200 DLIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQAN  251 (256)
T ss_dssp             HHHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             hHHHHHHHHhC--CCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence            45677887774  689999999 9999999888888899999999999999995

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00015  Score=51.21  Aligned_cols=92  Identities=10%  Similarity=-0.082  Sum_probs=60.4

Q ss_pred             cCCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEc-c--CCC---CCCCCCCccE
Q psy8015          23 GHSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIA-D--GRA---SFGDNGPYDA   92 (165)
Q Consensus        23 ~~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~g-D--~~~---~~~~~~~fD~   92 (165)
                      ..+|+++||=. +  |.|..+..+|+.. .+|++++.+++-.+.++  ++|.+.+  +.- |  ..+   .......||+
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~--~~Ga~~v--i~~~~~~~~~~i~~~t~~~g~d~  100 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL--QNGAHEV--FNHREVNYIDKIKKYVGEKGIDI  100 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH--HTTCSEE--EETTSTTHHHHHHHHHCTTCEEE
T ss_pred             CCCCCCEEEEEeccccccccccccccccCccccccccccccccccc--ccCcccc--cccccccHHHHhhhhhccCCceE
Confidence            34789999998 5  4556677777765 48999999998777774  4565432  211 1  101   0112356998


Q ss_pred             EEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          93 IHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        93 I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      |+-..+. ..-+...+.|+|+|+++..
T Consensus       101 v~d~~g~-~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2         101 IIEMLAN-VNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             EEESCHH-HHHHHHHHHEEEEEEEEEC
T ss_pred             EeecccH-HHHHHHHhccCCCCEEEEE
Confidence            8876553 3445567999999998874

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.73  E-value=0.00033  Score=49.09  Aligned_cols=97  Identities=10%  Similarity=0.060  Sum_probs=62.2

Q ss_pred             HHHHhcCCCCCeEEEE-cc--ccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC------CCC
Q psy8015          18 VTYLSGHSKRLDCLAL-TS--NTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS------FGD   86 (165)
Q Consensus        18 l~~l~~~~~~~~vLei-~G--sG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~------~~~   86 (165)
                      +... ..+|+++||=+ ++  .|..+..+++..  .+|+.+|.+++-.+.++  ++|.+.  ++..+..+.      ...
T Consensus        20 l~~~-~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~--~~Ga~~--~i~~~~~~~~~~~~~~~~   94 (170)
T d1jvba2          20 VRKA-SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK--RAGADY--VINASMQDPLAEIRRITE   94 (170)
T ss_dssp             HHHT-TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH--HHTCSE--EEETTTSCHHHHHHHHTT
T ss_pred             HHHh-CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHH--HcCCce--eeccCCcCHHHHHHHHhh
Confidence            3443 35899999988 62  445555555532  58999999999888885  334432  222221110      011


Q ss_pred             CCCccEEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          87 NGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        87 ~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ...||+++-....+...+...+.|+|||++++.
T Consensus        95 ~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2          95 SKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             TSCEEEEEESCCCHHHHTTGGGGEEEEEEEEEC
T ss_pred             cccchhhhcccccchHHHhhhhhcccCCEEEEe
Confidence            246998887666555556677999999998864

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.72  E-value=0.00076  Score=47.39  Aligned_cols=92  Identities=10%  Similarity=-0.094  Sum_probs=60.2

Q ss_pred             CCCCCeEEEE-cc-ccHHHHHHhcc--CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC-----CCCCCCCccEEE
Q psy8015          24 HSKRLDCLAL-TS-NTKQSTTLPTF--IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA-----SFGDNGPYDAIH   94 (165)
Q Consensus        24 ~~~~~~vLei-~G-sG~~t~~la~~--~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~-----~~~~~~~fD~I~   94 (165)
                      .+|+++||=+ +| .|..+..+++.  ..+|+++|.+++-++.++  ++|.+  +++..+...     .......+|+++
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~--~~ga~--~~i~~~~~~~~~~~~~~~~~g~d~vi  105 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE--RLGAD--HVVDARRDPVKQVMELTRGRGVNVAM  105 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH--HTTCS--EEEETTSCHHHHHHHHTTTCCEEEEE
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHh--hcccc--eeecCcccHHHHHHHhhCCCCceEEE
Confidence            4789999988 43 44555666654  358899999999888775  33433  233322110     001124599888


Q ss_pred             EcCCCCCchHHHHhccccCcEEEEE
Q psy8015          95 VGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        95 i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      -........+...+.|++||++++.
T Consensus       106 d~~g~~~~~~~a~~~l~~~G~iv~~  130 (172)
T d1h2ba2         106 DFVGSQATVDYTPYLLGRMGRLIIV  130 (172)
T ss_dssp             ESSCCHHHHHHGGGGEEEEEEEEEC
T ss_pred             EecCcchHHHHHHHHHhCCCEEEEE
Confidence            8766665566678999999999973

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.68  E-value=0.0012  Score=49.12  Aligned_cols=51  Identities=12%  Similarity=-0.027  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcc
Q psy8015          12 GAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPL   64 (165)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~   64 (165)
                      ....++++...  .+|+.|||- +|||..+.....+..+.+++|++++..+.|+
T Consensus       195 ~L~~~~I~~~s--~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~  246 (279)
T d1eg2a_         195 AVIERLVRALS--HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQ  246 (279)
T ss_dssp             HHHHHHHHHHS--CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHH
T ss_pred             hHHHHHHHhhc--CCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHH
Confidence            45778888773  689999999 9999999888888899999999999999994

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.62  E-value=0.00075  Score=47.24  Aligned_cols=96  Identities=5%  Similarity=-0.079  Sum_probs=66.6

Q ss_pred             cCCCCCeEEEE--ccccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEcc-CCCC------CCCCCCcc
Q psy8015          23 GHSKRLDCLAL--TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIAD-GRAS------FGDNGPYD   91 (165)
Q Consensus        23 ~~~~~~~vLei--~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD-~~~~------~~~~~~fD   91 (165)
                      ..+||++||=.  .|.|.++..+++..  ..|+++|.+++..+.++  ++|.+.  ++.-+ ..+.      ....+.+|
T Consensus        25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak--~lGa~~--~i~~~~~~~~~~~~~~~~~~~g~D  100 (176)
T d2fzwa2          25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK--EFGATE--CINPQDFSKPIQEVLIEMTDGGVD  100 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH--HHTCSE--EECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHH--HhCCcE--EEeCCchhhHHHHHHHHHcCCCCc
Confidence            35899999998  66677777777764  57999999999998885  345432  22211 1100      01124699


Q ss_pred             EEEEcCCCCCchHHHHhccccCcEEEEEecC
Q psy8015          92 AIHVGAAYPRYPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        92 ~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      +|+-....+...+.....+++||++++..+.
T Consensus       101 ~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~  131 (176)
T d2fzwa2         101 YSFECIGNVKVMRAALEACHKGWGVSVVVGV  131 (176)
T ss_dssp             EEEECSCCHHHHHHHHHTBCTTTCEEEECSC
T ss_pred             EeeecCCCHHHHHHHHHhhcCCceeEEEEee
Confidence            9988777777778888999999888776543

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.55  E-value=0.0011  Score=46.67  Aligned_cols=96  Identities=14%  Similarity=0.039  Sum_probs=59.2

Q ss_pred             HHHHhcCCCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEE
Q psy8015          18 VTYLSGHSKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAI   93 (165)
Q Consensus        18 l~~l~~~~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I   93 (165)
                      ++.. ..+|+++||=. .  +.|..+..+|+.. .+|++++.+++-.+.++  ++|.+.+- -..|..........+|+|
T Consensus        20 l~~~-~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~--~lGa~~~i-~~~~~~~~~~~~~g~D~v   95 (171)
T d1iz0a2          20 LKRA-QARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL--ALGAEEAA-TYAEVPERAKAWGGLDLV   95 (171)
T ss_dssp             HHHT-TCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH--HTTCSEEE-EGGGHHHHHHHTTSEEEE
T ss_pred             HHHh-CCCCCCEEEEEeccccchhhhhhhhccccccccccccccccccccc--ccccceee-ehhhhhhhhhcccccccc
Confidence            4443 45899999877 3  2245666677665 48999999988777664  45655332 112211111123569988


Q ss_pred             EEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      |=... +.+ +..++.|+|+|+++..
T Consensus        96 ~d~~G-~~~-~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          96 LEVRG-KEV-EESLGLLAHGGRLVYI  119 (171)
T ss_dssp             EECSC-TTH-HHHHTTEEEEEEEEEC
T ss_pred             ccccc-hhH-HHHHHHHhcCCcEEEE
Confidence            75333 444 5567999999998874

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.00064  Score=47.81  Aligned_cols=93  Identities=6%  Similarity=-0.130  Sum_probs=60.8

Q ss_pred             cCCCCCeEEEE-cc--ccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC---CC---CCCCCCccE
Q psy8015          23 GHSKRLDCLAL-TS--NTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR---AS---FGDNGPYDA   92 (165)
Q Consensus        23 ~~~~~~~vLei-~G--sG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~---~~---~~~~~~fD~   92 (165)
                      ..+|+++||=. .|  .|..+..+|+.. .+|++++.+++-.+.++  ++|.+.  ++..+-.   +.   ......+|+
T Consensus        25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~--~lGa~~--vi~~~~~d~~~~v~~~t~g~g~d~  100 (179)
T d1qora2          25 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL--KAGAWQ--VINYREEDLVERLKEITGGKKVRV  100 (179)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH--HHTCSE--EEETTTSCHHHHHHHHTTTCCEEE
T ss_pred             CCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHH--hcCCeE--EEECCCCCHHHHHHHHhCCCCeEE
Confidence            34789999988 33  566777777764 59999999999988775  345442  2221111   10   112356897


Q ss_pred             EEEcCCCCCchHHHHhccccCcEEEEEe
Q psy8015          93 IHVGAAYPRYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        93 I~i~~~~~~~p~~l~~~LkpgG~lvi~~  120 (165)
                      |+-... ...-+...+.|+++|+++..-
T Consensus       101 v~d~~g-~~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2         101 VYDSVG-RDTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             EEECSC-GGGHHHHHHTEEEEEEEEECC
T ss_pred             EEeCcc-HHHHHHHHHHHhcCCeeeecc
Confidence            766554 444566789999999987743

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.32  E-value=0.0029  Score=44.96  Aligned_cols=93  Identities=8%  Similarity=-0.105  Sum_probs=56.7

Q ss_pred             CCCCeEEEE-c--cccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--CCCCCCccEEEEcCC
Q psy8015          25 SKRLDCLAL-T--SNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--FGDNGPYDAIHVGAA   98 (165)
Q Consensus        25 ~~~~~vLei-~--GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~~~~~~fD~I~i~~~   98 (165)
                      .++++||=- .  |.|.++..+|+.. .+|++.-.+++-.+.++  ++|.+.+--...+..+.  ....+.||+|+=.-.
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~--~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vg  107 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR--VLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG  107 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH--HTTCSEEEECC---------CCSCCEEEEEECST
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHH--hcccceeeecchhHHHHHHHhhccCcCEEEEcCC
Confidence            568889877 3  3346666677654 58999999988887775  34544322111111111  112357997655444


Q ss_pred             CCCchHHHHhccccCcEEEEEe
Q psy8015          99 YPRYPEIFIHHLKSGGRLVIPI  120 (165)
Q Consensus        99 ~~~~p~~l~~~LkpgG~lvi~~  120 (165)
                       ....+...+.|+||||++..-
T Consensus       108 -g~~~~~~l~~l~~~Griv~~G  128 (176)
T d1xa0a2         108 -GRTLATVLSRMRYGGAVAVSG  128 (176)
T ss_dssp             -TTTHHHHHHTEEEEEEEEECS
T ss_pred             -chhHHHHHHHhCCCceEEEee
Confidence             445566679999999988743

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.27  E-value=0.00057  Score=47.48  Aligned_cols=92  Identities=11%  Similarity=-0.008  Sum_probs=58.4

Q ss_pred             cCCCCCeEEEE-cc-ccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC-----CCCCccEEE
Q psy8015          23 GHSKRLDCLAL-TS-NTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG-----DNGPYDAIH   94 (165)
Q Consensus        23 ~~~~~~~vLei-~G-sG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~-----~~~~fD~I~   94 (165)
                      ..+|+++||=. +| .|..+..+++.. .+|+++|.+++-.+.++  ++|.+.+   .....+...     ....+|.++
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k--~~Ga~~~---~~~~~~~~~~~~~~~~~~~~~~v   98 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK--ELGADLV---VNPLKEDAAKFMKEKVGGVHAAV   98 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH--HTTCSEE---ECTTTSCHHHHHHHHHSSEEEEE
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhh--hcCccee---cccccchhhhhcccccCCCceEE
Confidence            35899999888 43 455556666554 68999999999988875  3454322   111111110     012355566


Q ss_pred             EcCCCCCchHHHHhccccCcEEEEE
Q psy8015          95 VGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        95 i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      .+...+...+...+.|+|+|++++.
T Consensus        99 ~~~~~~~~~~~a~~~l~~~G~i~~~  123 (168)
T d1rjwa2          99 VTAVSKPAFQSAYNSIRRGGACVLV  123 (168)
T ss_dssp             ESSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred             eecCCHHHHHHHHHHhccCCceEec
Confidence            6655555556778999999998884

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.27  E-value=0.0011  Score=46.95  Aligned_cols=95  Identities=8%  Similarity=-0.105  Sum_probs=59.4

Q ss_pred             cCCCCCeEEEE-cc-ccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCe-EEEEccCC--C--CCCCCCCccEE
Q psy8015          23 GHSKRLDCLAL-TS-NTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHD-YDLIADGR--A--SFGDNGPYDAI   93 (165)
Q Consensus        23 ~~~~~~~vLei-~G-sG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV-~~~~gD~~--~--~~~~~~~fD~I   93 (165)
                      ..+|+++||=+ +| .|.++..+++..  .+|+++|.+++.++.|+  ++|.+.+ .....|..  +  .....+.+|.+
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~--~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~v  101 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI--ELGATECLNPKDYDKPIYEVICEKTNGGVDYA  101 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH--HTTCSEEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHH--HcCCcEEEcCCCchhHHHHHHHHhcCCCCcEE
Confidence            35899999988 54 345556666653  58999999999999885  3454321 11112211  0  00112469999


Q ss_pred             EEcCCCCCchHHHHhcccc-CcEEEEE
Q psy8015          94 HVGAAYPRYPEIFIHHLKS-GGRLVIP  119 (165)
Q Consensus        94 ~i~~~~~~~p~~l~~~Lkp-gG~lvi~  119 (165)
                      |-....+...+.....+++ +|++++.
T Consensus       102 id~~g~~~~~~~~~~~~~~~~G~~v~v  128 (174)
T d1p0fa2         102 VECAGRIETMMNALQSTYCGSGVTVVL  128 (174)
T ss_dssp             EECSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             EEcCCCchHHHHHHHHHHHhcCceEEE
Confidence            8877766665655666655 5887773

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.87  E-value=0.003  Score=44.58  Aligned_cols=95  Identities=9%  Similarity=-0.020  Sum_probs=59.9

Q ss_pred             HhcCCCCCeEEEEcc---ccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC--C---CCCCCCCcc
Q psy8015          21 LSGHSKRLDCLALTS---NTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR--A---SFGDNGPYD   91 (165)
Q Consensus        21 l~~~~~~~~vLei~G---sG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~--~---~~~~~~~fD   91 (165)
                      ....+||++||=..+   .|..+..+|+.. .+|+++..+++-.+.++  ++|.+.+ +...|..  +   .......+|
T Consensus        24 ~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~--~~Ga~~v-i~~~~~~~~~~~~~~~~~~Gvd  100 (182)
T d1v3va2          24 VCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK--QIGFDAA-FNYKTVNSLEEALKKASPDGYD  100 (182)
T ss_dssp             TTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH--HTTCSEE-EETTSCSCHHHHHHHHCTTCEE
T ss_pred             HhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHH--hhhhhhh-cccccccHHHHHHHHhhcCCCc
Confidence            334589999995533   345556666654 59999999998777664  3455433 2222211  0   011234699


Q ss_pred             EEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          92 AIHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        92 ~I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      +||=... ....+..++.|+|||+++..
T Consensus       101 ~v~D~vG-~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2         101 CYFDNVG-GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             EEEESSC-HHHHHHHGGGEEEEEEEEEC
T ss_pred             eeEEecC-chhhhhhhhhccCCCeEEee
Confidence            8776554 44556778999999998874

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.75  E-value=0.0095  Score=41.46  Aligned_cols=96  Identities=6%  Similarity=-0.082  Sum_probs=63.0

Q ss_pred             cCCCCCeEEEE-c-cccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEE-ccCCCC------CCCCCCcc
Q psy8015          23 GHSKRLDCLAL-T-SNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLI-ADGRAS------FGDNGPYD   91 (165)
Q Consensus        23 ~~~~~~~vLei-~-GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~-gD~~~~------~~~~~~fD   91 (165)
                      ..+||++||=+ + |.|..++.+++..  .+|+++|.+++-.+.++  ++|.+.  .+. .+..+.      ....+.+|
T Consensus        25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~--~~Ga~~--~i~~~~~~~~~~~~~~~~~~~G~D  100 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK--EVGATE--CVNPQDYKKPIQEVLTEMSNGGVD  100 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH--HTTCSE--EECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHH--HhCCee--EEecCCchhHHHHHHHHHhcCCCC
Confidence            35899999999 4 5555666666654  58999999999999885  224332  121 111110      01124699


Q ss_pred             EEEEcCCCCCchHHHHhccccCcEEEEEecC
Q psy8015          92 AIHVGAAYPRYPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        92 ~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      ++|-..+.+...+.....+++||..++..+.
T Consensus       101 ~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~  131 (176)
T d2jhfa2         101 FSFEVIGRLDTMVTALSCCQEAYGVSVIVGV  131 (176)
T ss_dssp             EEEECSCCHHHHHHHHHHBCTTTCEEEECSC
T ss_pred             EEEecCCchhHHHHHHHHHhcCCcceEEecC
Confidence            9988877777777778888887655555543

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=95.60  E-value=0.002  Score=45.46  Aligned_cols=92  Identities=3%  Similarity=-0.061  Sum_probs=55.5

Q ss_pred             CCCCeEEEEcccc---HHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC--CCCCCccEEEEcCC
Q psy8015          25 SKRLDCLALTSNT---KQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF--GDNGPYDAIHVGAA   98 (165)
Q Consensus        25 ~~~~~vLei~GsG---~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~--~~~~~fD~I~i~~~   98 (165)
                      .++++||=-.++|   ..+..||+.. .+|+++-.+++-.+.++  ++|.+.+-....+..+..  ...+.+|.|+-.-.
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~--~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vg   99 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLK--QLGASEVISREDVYDGTLKALSKQQWQGAVDPVG   99 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHH--HHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC
T ss_pred             CCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHH--hhcccceEeccchhchhhhcccCCCceEEEecCc
Confidence            3567788435455   5555566554 59999999888776664  445544322111111111  12357998766544


Q ss_pred             CCCchHHHHhccccCcEEEEE
Q psy8015          99 YPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        99 ~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      - ..-+...+.|+|+|+++..
T Consensus       100 g-~~~~~~~~~l~~~G~iv~~  119 (167)
T d1tt7a2         100 G-KQLASLLSKIQYGGSVAVS  119 (167)
T ss_dssp             T-HHHHHHHTTEEEEEEEEEC
T ss_pred             H-HHHHHHHHHhccCceEEEe
Confidence            3 3445677999999998874

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.43  E-value=0.0027  Score=44.84  Aligned_cols=94  Identities=5%  Similarity=-0.150  Sum_probs=56.8

Q ss_pred             CCCCCeEEEE-cc-ccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCC-eEEEEccCC-C---CCCCCCCccEEE
Q psy8015          24 HSKRLDCLAL-TS-NTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDH-DYDLIADGR-A---SFGDNGPYDAIH   94 (165)
Q Consensus        24 ~~~~~~vLei-~G-sG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~n-V~~~~gD~~-~---~~~~~~~fD~I~   94 (165)
                      .++++.|+=+ +| .|.++..+++..  .+|+++|.+++.++.|+  ++|.+. +.....|.. +   .......+|.++
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak--~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi  104 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAM--AVGATECISPKDSTKPISEVLSEMTGNNVGYTF  104 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH--HHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEE
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHH--hcCCcEEECccccchHHHHHHHHhccccceEEE
Confidence            4789999988 44 445556666654  58999999999999996  224322 111111111 0   001124699888


Q ss_pred             EcCCCCCchH-HHHhccccCcEEEEE
Q psy8015          95 VGAAYPRYPE-IFIHHLKSGGRLVIP  119 (165)
Q Consensus        95 i~~~~~~~p~-~l~~~LkpgG~lvi~  119 (165)
                      ...+.+...+ .+...++++|++++.
T Consensus       105 ~~~g~~~~~~~a~~~~~~~~G~~v~v  130 (176)
T d1d1ta2         105 EVIGHLETMIDALASCHMNYGTSVVV  130 (176)
T ss_dssp             ECSCCHHHHHHHHTTSCTTTCEEEEC
T ss_pred             EeCCchHHHHHHHHHhhcCCeEEEEE
Confidence            8766655444 444444556898875

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.38  E-value=0.028  Score=38.74  Aligned_cols=96  Identities=6%  Similarity=-0.100  Sum_probs=60.9

Q ss_pred             cCCCCCeEEEE-ccc-cHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC-------CCCCcc
Q psy8015          23 GHSKRLDCLAL-TSN-TKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG-------DNGPYD   91 (165)
Q Consensus        23 ~~~~~~~vLei-~Gs-G~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~-------~~~~fD   91 (165)
                      ..+|+++|+=+ +|. |.+++.+++..  .+|+++|.+++.++.|+  ++|.+.  ++.-+-...+.       ....+|
T Consensus        25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~--~~GAd~--~in~~~~~~~~~~~~~~~~~~G~d  100 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK--VFGATD--FVNPNDHSEPISQVLSKMTNGGVD  100 (175)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH--HTTCCE--EECGGGCSSCHHHHHHHHHTSCBS
T ss_pred             CCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH--HcCCcE--EEcCCCcchhHHHHHHhhccCCcc
Confidence            45899999999 665 55555555543  58999999999999885  345432  22211111110       124699


Q ss_pred             EEEEcCCCCCchHHHHhccccCcEEEEEecC
Q psy8015          92 AIHVGAAYPRYPEIFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus        92 ~I~i~~~~~~~p~~l~~~LkpgG~lvi~~~~  122 (165)
                      .++-........+.....+++||..++..+.
T Consensus       101 ~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~  131 (175)
T d1cdoa2         101 FSLECVGNVGVMRNALESCLKGWGVSVLVGW  131 (175)
T ss_dssp             EEEECSCCHHHHHHHHHTBCTTTCEEEECSC
T ss_pred             eeeeecCCHHHHHHHHHHhhCCCcceeEEEe
Confidence            9988777666666666777777665555554

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=95.37  E-value=0.0035  Score=44.51  Aligned_cols=89  Identities=7%  Similarity=-0.018  Sum_probs=55.8

Q ss_pred             CCCeEEEEccc---cHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCC--CCCCCCCccEEEEcCCC
Q psy8015          26 KRLDCLALTSN---TKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRA--SFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        26 ~~~~vLei~Gs---G~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~--~~~~~~~fD~I~i~~~~   99 (165)
                      ++++||=..|+   |..+..+|+.. .+|+++..+++-.+.++  .+|.+.+  +.-+-..  .......+|.+ ++...
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~--~lGad~v--i~~~~~~~~~~l~~~~~~~v-vD~Vg  105 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLK--SLGASRV--LPRDEFAESRPLEKQVWAGA-IDTVG  105 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH--HHTEEEE--EEGGGSSSCCSSCCCCEEEE-EESSC
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHH--hhccccc--cccccHHHHHHHHhhcCCee-EEEcc
Confidence            34577743444   56667777765 58999999998887764  3344332  2222111  11123567876 45555


Q ss_pred             CCchHHHHhccccCcEEEEE
Q psy8015         100 PRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus       100 ~~~p~~l~~~LkpgG~lvi~  119 (165)
                      ...-+...+.|+++|+++..
T Consensus       106 g~~~~~~l~~l~~~Griv~~  125 (177)
T d1o89a2         106 DKVLAKVLAQMNYGGCVAAC  125 (177)
T ss_dssp             HHHHHHHHHTEEEEEEEEEC
T ss_pred             hHHHHHHHHHhccccceEee
Confidence            55566778999999998884

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.37  E-value=0.0033  Score=44.03  Aligned_cols=92  Identities=11%  Similarity=-0.041  Sum_probs=58.6

Q ss_pred             cCCCCCeEEEE---ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCC---CC---CCCCCCccE
Q psy8015          23 GHSKRLDCLAL---TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGR---AS---FGDNGPYDA   92 (165)
Q Consensus        23 ~~~~~~~vLei---~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~---~~---~~~~~~fD~   92 (165)
                      ..+++++||=.   .|.|..+..+|+.. .+|+++..+++-.+.++  +.|.+.+  +..+-.   +.   ......||+
T Consensus        22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~--~~Ga~~v--i~~~~~~~~~~v~~~t~~~g~d~   97 (183)
T d1pqwa_          22 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS--RLGVEYV--GDSRSVDFADEILELTDGYGVDV   97 (183)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH--TTCCSEE--EETTCSTHHHHHHHHTTTCCEEE
T ss_pred             CCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccc--ccccccc--ccCCccCHHHHHHHHhCCCCEEE
Confidence            34789999975   34456666666553 58999988887777664  4565432  221111   10   012346999


Q ss_pred             EEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          93 IHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        93 I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      |+-..+. ..-+.+.+.|+++|+++..
T Consensus        98 v~d~~g~-~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          98 VLNSLAG-EAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             EEECCCT-HHHHHHHHTEEEEEEEEEC
T ss_pred             EEecccc-hHHHHHHHHhcCCCEEEEE
Confidence            9876654 4446678999999998874

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=94.59  E-value=0.0074  Score=45.26  Aligned_cols=75  Identities=11%  Similarity=-0.041  Sum_probs=53.8

Q ss_pred             CCCCeEEEE-ccccHHHHHHhccC------------------------------------------CcEEEEeCCHHHHH
Q psy8015          25 SKRLDCLAL-TSNTKQSTTLPTFI------------------------------------------PNSFNINVYYYLSG   61 (165)
Q Consensus        25 ~~~~~vLei-~GsG~~t~~la~~~------------------------------------------~~V~aiD~~~~~~~   61 (165)
                      .++..++|- ||||.+.++.|-+.                                          .++++.|+++++++
T Consensus        49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~  128 (249)
T d1o9ga_          49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  128 (249)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence            455679999 99999987766532                                          13578888999888


Q ss_pred             hc-----ccccCCCCC-eEEEEccCCCCCC-----CCCCccEEEEcCCC
Q psy8015          62 GP-----LSSTIDPDH-DYDLIADGRASFG-----DNGPYDAIHVGAAY   99 (165)
Q Consensus        62 ~A-----~~~~~~~~n-V~~~~gD~~~~~~-----~~~~fD~I~i~~~~   99 (165)
                      .|     +++..|+.. +++...|.++..+     ....+++|+++..+
T Consensus       129 ~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPY  177 (249)
T d1o9ga_         129 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPY  177 (249)
T ss_dssp             HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCG
T ss_pred             HHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCc
Confidence            87     256677764 8999999865322     23467999998554

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.20  E-value=0.014  Score=41.19  Aligned_cols=92  Identities=10%  Similarity=0.004  Sum_probs=60.4

Q ss_pred             CCCeEEEE-ccc-cHHHHHHhc-cCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC--
Q psy8015          26 KRLDCLAL-TSN-TKQSTTLPT-FIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP--  100 (165)
Q Consensus        26 ~~~~vLei-~Gs-G~~t~~la~-~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~--  100 (165)
                      +..+|+=| +|. |..++..|. +..+|+.+|.+++.++..+  .....+++....+-..........|+|+.....+  
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~--~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~  108 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLE--TLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  108 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH--HHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHH--HhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence            46789999 664 556665555 4569999999999998764  1112356666655322111124689888775543  


Q ss_pred             ----CchHHHHhccccCcEEEEE
Q psy8015         101 ----RYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus       101 ----~~p~~l~~~LkpgG~lvi~  119 (165)
                          -+.++..+.+|||..+|=.
T Consensus       109 ~aP~lIt~~mv~~Mk~GSVIVDv  131 (168)
T d1pjca1         109 RAPILVPASLVEQMRTGSVIVDV  131 (168)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEET
T ss_pred             ccCeeecHHHHhhcCCCcEEEEe
Confidence                3457899999998876643

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=94.05  E-value=0.078  Score=39.42  Aligned_cols=69  Identities=9%  Similarity=-0.107  Sum_probs=48.1

Q ss_pred             CeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC-CCCCccEEEEcCCCC
Q psy8015          28 LDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG-DNGPYDAIHVGAAYP  100 (165)
Q Consensus        28 ~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~-~~~~fD~I~i~~~~~  100 (165)
                      .+|+|+ ||.|-++.-|-+.+ ..|.++|+++.+.+.-+..   .+ -+++.+|..+... +....|+++.+..+.
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N---~~-~~~~~~Di~~~~~~~~~~~dll~~g~PCq   72 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESN---HS-AKLIKGDISKISSDEFPKCDGIIGGPPCQ   72 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHH---CC-SEEEESCTTTSCGGGSCCCSEEEECCCCT
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHH---CC-CCCccCChhhCCHhHcccccEEeeccccc
Confidence            479999 99999987776654 4567999999988865422   12 3557788765322 235689888775443

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.93  E-value=0.051  Score=38.67  Aligned_cols=92  Identities=10%  Similarity=-0.057  Sum_probs=54.7

Q ss_pred             CCCeEEEE-ccc-cHHHHHHhcc-CCcEEEEeCCHHHHHhcccccCCCCCe----------EEEEccCCCCCC-------
Q psy8015          26 KRLDCLAL-TSN-TKQSTTLPTF-IPNSFNINVYYYLSGGPLSSTIDPDHD----------YDLIADGRASFG-------   85 (165)
Q Consensus        26 ~~~~vLei-~Gs-G~~t~~la~~-~~~V~aiD~~~~~~~~A~~~~~~~~nV----------~~~~gD~~~~~~-------   85 (165)
                      |..+|+=| .|. |..++..|.. ..+|+.+|++++..+..+  +++-..+          +-..+.+.+...       
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~--~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~  105 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVE--SLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  105 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH--HTTCEECCC-----------------------CCHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHH--HhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence            45789999 664 5666666654 569999999999888774  1111111          111111111000       


Q ss_pred             -----CCCCccEEEEcCCCC------CchHHHHhccccCcEEEEE
Q psy8015          86 -----DNGPYDAIHVGAAYP------RYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        86 -----~~~~fD~I~i~~~~~------~~p~~l~~~LkpgG~lvi~  119 (165)
                           .....|.|+.....+      -+.+++.+.+|||..+|=.
T Consensus       106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDv  150 (183)
T d1l7da1         106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDL  150 (183)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEET
T ss_pred             HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEE
Confidence                 013689888876544      3557899999998876643

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=93.76  E-value=0.0079  Score=42.60  Aligned_cols=96  Identities=8%  Similarity=-0.047  Sum_probs=52.9

Q ss_pred             cCCCCCeEEEE-cccc---HHHHHHhccC-CcEEEEeCCHHHHH-hc-ccccCCCCCeEEEE-ccCCCCC---C-----C
Q psy8015          23 GHSKRLDCLAL-TSNT---KQSTTLPTFI-PNSFNINVYYYLSG-GP-LSSTIDPDHDYDLI-ADGRASF---G-----D   86 (165)
Q Consensus        23 ~~~~~~~vLei-~GsG---~~t~~la~~~-~~V~aiD~~~~~~~-~A-~~~~~~~~nV~~~~-gD~~~~~---~-----~   86 (165)
                      ..+||++||=+ .|+|   ..+..+|+.. .+|+++=.+++-.+ .. .++++|.+.+-... .|..+..   .     .
T Consensus        25 ~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~  104 (189)
T d1gu7a2          25 KLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQS  104 (189)
T ss_dssp             CCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhc
Confidence            45789988887 6655   4555666654 47887744433322 22 24556765432211 1111100   0     1


Q ss_pred             CCCccEEEEcCCCCCchHHHHhccccCcEEEEE
Q psy8015          87 NGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVIP  119 (165)
Q Consensus        87 ~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi~  119 (165)
                      .+.+|++|= ..-....+...+.|+|+|++|..
T Consensus       105 g~~vdvv~D-~vg~~~~~~~~~~l~~~G~~v~~  136 (189)
T d1gu7a2         105 GGEAKLALN-CVGGKSSTGIARKLNNNGLMLTY  136 (189)
T ss_dssp             TCCEEEEEE-SSCHHHHHHHHHTSCTTCEEEEC
T ss_pred             cCCceEEEE-CCCcchhhhhhhhhcCCcEEEEE
Confidence            245887764 33333446678999999998763

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=93.20  E-value=0.13  Score=33.63  Aligned_cols=83  Identities=5%  Similarity=-0.092  Sum_probs=53.7

Q ss_pred             ccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCC--C--CCCCccEEEEcCCCCCc---
Q psy8015          34 TSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASF--G--DNGPYDAIHVGAAYPRY---  102 (165)
Q Consensus        34 ~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~--~--~~~~fD~I~i~~~~~~~---  102 (165)
                      ||.|.++..+++.    ..+|+.+|.|++.++.++.  .+   ..++.||+.+..  .  .....|.+++......-   
T Consensus         6 iG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~--~~---~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~~   80 (134)
T d2hmva1           6 IGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS--YA---THAVIANATEENELLSLGIRNFEYVIVAIGANIQAST   80 (134)
T ss_dssp             ECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT--TC---SEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHHH
T ss_pred             ECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH--hC---CcceeeecccchhhhccCCccccEEEEEcCchHHhHH
Confidence            8999988777764    4689999999999997742  22   356789986421  1  12467888875544322   


Q ss_pred             hHHHHhccccCcEEEEEec
Q psy8015         103 PEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       103 p~~l~~~LkpgG~lvi~~~  121 (165)
                      .-.....+.|..++++-..
T Consensus        81 ~~~~~~~~~~~~~iiar~~   99 (134)
T d2hmva1          81 LTTLLLKELDIPNIWVKAQ   99 (134)
T ss_dssp             HHHHHHHHTTCSEEEEECC
T ss_pred             HHHHHHHHcCCCcEEeecc
Confidence            1233455666677666544

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=92.97  E-value=0.095  Score=39.35  Aligned_cols=70  Identities=10%  Similarity=-0.086  Sum_probs=47.7

Q ss_pred             CCCeEEEE-ccccHHHHHHhccC-CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCC-CCCCccEEEEcCCCC
Q psy8015          26 KRLDCLAL-TSNTKQSTTLPTFI-PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFG-DNGPYDAIHVGAAYP  100 (165)
Q Consensus        26 ~~~~vLei-~GsG~~t~~la~~~-~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~-~~~~fD~I~i~~~~~  100 (165)
                      .+.||+|+ ||.|.++.-|-+.. .-|.++|+++.+++.-+...   .+.  .++|..+... ....+|+++.+..+.
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~---~~~--~~~Di~~~~~~~~~~~Dll~ggpPCq   82 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNF---GEK--PEGDITQVNEKTIPDHDILCAGFPCQ   82 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHH---SCC--CBSCGGGSCGGGSCCCSEEEEECCCT
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHC---CCC--CcCchhcCchhhcceeeeeecccccc
Confidence            67999999 99999998887665 35688999999998765221   111  2466554222 234689888775443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.41  E-value=0.068  Score=35.17  Aligned_cols=83  Identities=8%  Similarity=-0.001  Sum_probs=53.6

Q ss_pred             ccccHHHHHHhcc----CCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--C--CCCCCccEEEEcCCCCC--c-
Q psy8015          34 TSNTKQSTTLPTF----IPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--F--GDNGPYDAIHVGAAYPR--Y-  102 (165)
Q Consensus        34 ~GsG~~t~~la~~----~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~--~~~~~fD~I~i~~~~~~--~-  102 (165)
                      ||.|.++..+++.    ...|+.+|.|++.++.++.+ .   ++.++.||+...  +  ......|.+++.....+  + 
T Consensus         6 ~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~-~---~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~N~~   81 (132)
T d1lssa_           6 AGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE-I---DALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVNLM   81 (132)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-C---SSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh-h---hhhhccCcccchhhhhhcChhhhhhhcccCCcHHHHHH
Confidence            8999999888864    35799999999999876422 1   468899998641  1  12356898887433321  1 


Q ss_pred             hHHHHhccccCcEEEEEec
Q psy8015         103 PEIFIHHLKSGGRLVIPIG  121 (165)
Q Consensus       103 p~~l~~~LkpgG~lvi~~~  121 (165)
                      .....+.+.+. +.++-+.
T Consensus        82 ~~~~~k~~~~~-~iI~~~~   99 (132)
T d1lssa_          82 SSLLAKSYGIN-KTIARIS   99 (132)
T ss_dssp             HHHHHHHTTCC-CEEEECS
T ss_pred             HHHHHHHcCCc-eEEEEec
Confidence            12234566666 4444443

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=91.59  E-value=0.2  Score=32.57  Aligned_cols=85  Identities=8%  Similarity=-0.038  Sum_probs=60.0

Q ss_pred             ccccHHHHHHhccC--CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC--C--CCCCCccEEEEcCCCCCc---hH
Q psy8015          34 TSNTKQSTTLPTFI--PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS--F--GDNGPYDAIHVGAAYPRY---PE  104 (165)
Q Consensus        34 ~GsG~~t~~la~~~--~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~--~--~~~~~fD~I~i~~~~~~~---p~  104 (165)
                      ||.|-.+..+++..  ..|+.+|.+++..+.++.     .++.++.||+.+.  +  ....+.+.+++.......   --
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~-----~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~~~~   80 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR-----SGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIHCI   80 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH-----TTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh-----cCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhHHHH
Confidence            89999999999865  479999999999886642     2578999998642  1  223578888885433211   11


Q ss_pred             HHHhccccCcEEEEEecCC
Q psy8015         105 IFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus       105 ~l~~~LkpgG~lvi~~~~~  123 (165)
                      ...+.+.|..++++-+.+.
T Consensus        81 ~~~r~~~~~~~iia~~~~~   99 (129)
T d2fy8a1          81 LGIRKIDESVRIIAEAERY   99 (129)
T ss_dssp             HHHHHHCSSSCEEEECSSG
T ss_pred             HHHHHHCCCceEEEEEcCH
Confidence            3457788998888877654

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=91.23  E-value=0.41  Score=29.58  Aligned_cols=71  Identities=4%  Similarity=-0.151  Sum_probs=42.8

Q ss_pred             eEEEE--ccccHHH--HHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCCchH
Q psy8015          29 DCLAL--TSNTKQS--TTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRYPE  104 (165)
Q Consensus        29 ~vLei--~GsG~~t--~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p~  104 (165)
                      |+-=|  +|+|-.+  ..|.....+|.+.|..+.-.- .+++.+|.   ++..+.-.+.+   ...|+|+.+.+.+.--.
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t-~~L~~~Gi---~i~~gh~~~~i---~~~d~vV~SsAI~~~np   75 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERT-AYLRKLGI---PIFVPHSADNW---YDPDLVIKTPAVRDDNP   75 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHH-HHHHHTTC---CEESSCCTTSC---CCCSEEEECTTCCTTCH
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhH-HHHHHCCC---eEEeeeccccc---CCCCEEEEecCcCCCCH
Confidence            44445  7777544  555556779999998863322 24666664   44444333333   35799999988774433


Q ss_pred             HH
Q psy8015         105 IF  106 (165)
Q Consensus       105 ~l  106 (165)
                      ++
T Consensus        76 el   77 (89)
T d1j6ua1          76 EI   77 (89)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.14  E-value=0.048  Score=38.25  Aligned_cols=104  Identities=9%  Similarity=-0.022  Sum_probs=58.3

Q ss_pred             chHHHHHH-HHHHhcCCCC--CeEEEE---ccccHHHHHHhccCC--cEEEEeCCHHHHHhcccccCCCCCeEEEEcc--
Q psy8015          10 VSGAVAKY-VTYLSGHSKR--LDCLAL---TSNTKQSTTLPTFIP--NSFNINVYYYLSGGPLSSTIDPDHDYDLIAD--   79 (165)
Q Consensus        10 ~~~~~~~~-l~~l~~~~~~--~~vLei---~GsG~~t~~la~~~~--~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD--   79 (165)
                      .+.+.+.. +......+++  +.||=-   .|.|.++..+|+..+  .|+++..+++-..... +.+|.+.  ++...  
T Consensus        11 ~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~-~~~gad~--vi~~~~~   87 (187)
T d1vj1a2          11 MPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLT-SELGFDA--AVNYKTG   87 (187)
T ss_dssp             HHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHH-HHSCCSE--EEETTSS
T ss_pred             cHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhh-hcccceE--Eeeccch
Confidence            34555543 3333334665  778864   566788888888763  5777776655544331 2234332  12211  


Q ss_pred             -CCC---CCCCCCCccEEEEcCCCCCchHHHHhccccCcEEEE
Q psy8015          80 -GRA---SFGDNGPYDAIHVGAAYPRYPEIFIHHLKSGGRLVI  118 (165)
Q Consensus        80 -~~~---~~~~~~~fD~I~i~~~~~~~p~~l~~~LkpgG~lvi  118 (165)
                       ..+   ... ...+|+||=... ...-+..++.|+++|+++.
T Consensus        88 ~~~~~~~~~~-~~GvDvv~D~vG-g~~~~~~~~~l~~~G~iv~  128 (187)
T d1vj1a2          88 NVAEQLREAC-PGGVDVYFDNVG-GDISNTVISQMNENSHIIL  128 (187)
T ss_dssp             CHHHHHHHHC-TTCEEEEEESSC-HHHHHHHHTTEEEEEEEEE
T ss_pred             hHHHHHHHHh-ccCceEEEecCC-chhHHHHhhhccccccEEE
Confidence             111   011 245998865443 3444567899999999876

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=90.87  E-value=0.65  Score=28.89  Aligned_cols=77  Identities=5%  Similarity=-0.118  Sum_probs=48.4

Q ss_pred             CCCCeEEEE--ccccHHH--HHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCC
Q psy8015          25 SKRLDCLAL--TSNTKQS--TTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYP  100 (165)
Q Consensus        25 ~~~~~vLei--~GsG~~t--~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~  100 (165)
                      ...+++.=|  +|+|-.+  ..|.....+|.+.|..+.-.. .++++.|   +++..+...+..   ...|+|+.+.+.+
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~-~~L~~~G---i~v~~g~~~~~i---~~~d~vV~S~AI~   78 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVT-QRLAQAG---AKIYIGHAEEHI---EGASVVVVSSAIK   78 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHH-HHHHHTT---CEEEESCCGGGG---TTCSEEEECTTSC
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhh-hHHHHCC---CeEEECCccccC---CCCCEEEECCCcC
Confidence            456778778  8888554  556666789999998632221 1233334   566666655443   3579999998876


Q ss_pred             CchHHHHh
Q psy8015         101 RYPEIFIH  108 (165)
Q Consensus       101 ~~p~~l~~  108 (165)
                      .--.++..
T Consensus        79 ~~npel~~   86 (96)
T d1p3da1          79 DDNPELVT   86 (96)
T ss_dssp             TTCHHHHH
T ss_pred             CCCHHHHH
Confidence            53333433

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.56  E-value=0.11  Score=38.90  Aligned_cols=70  Identities=14%  Similarity=-0.023  Sum_probs=46.0

Q ss_pred             CeEEEE-ccccHHHHHHhccC---CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCC---CCCccEEEEcCCCC
Q psy8015          28 LDCLAL-TSNTKQSTTLPTFI---PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGD---NGPYDAIHVGAAYP  100 (165)
Q Consensus        28 ~~vLei-~GsG~~t~~la~~~---~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~---~~~fD~I~i~~~~~  100 (165)
                      .+|+|+ ||.|.++.-|-..+   .-|.++|+++.+++.-+..   .++..++.+|..+....   ...+|+++.+..+.
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n---~~~~~~~~~di~~~~~~~~~~~~~Dll~ggpPCq   79 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN---FPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQ   79 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH---CTTSCEECSCGGGCCHHHHHHHCCSEEEECCC--
T ss_pred             CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHH---CCCCCcccCchhhCCHhHcCCCCccEEEeecccc
Confidence            589999 99998887665543   2378999999998876522   23456667776542211   13689888765443

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=88.61  E-value=0.23  Score=38.43  Aligned_cols=60  Identities=7%  Similarity=0.029  Sum_probs=40.1

Q ss_pred             EecCCchHHHHHHHHHH-----h--cCCCCCeEEEE-ccccHHHHHHhccC---------CcEEEEeCCHHHHHhcc
Q psy8015           5 FVSGSVSGAVAKYVTYL-----S--GHSKRLDCLAL-TSNTKQSTTLPTFI---------PNSFNINVYYYLSGGPL   64 (165)
Q Consensus         5 ~~~~~~~~~~~~~l~~l-----~--~~~~~~~vLei-~GsG~~t~~la~~~---------~~V~aiD~~~~~~~~A~   64 (165)
                      +||++++...+.++..-     .  ...+.-+|+|+ +|+|.++.-+.+..         -+++-+|.|+.+-+.-+
T Consensus        51 ~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~  127 (365)
T d1zkda1          51 TTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQ  127 (365)
T ss_dssp             CSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHH
T ss_pred             ECCCchHHHHHHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHH
Confidence            46777777766555311     1  11234579999 99999987665432         24789999999876543

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.98  E-value=0.67  Score=29.27  Aligned_cols=90  Identities=4%  Similarity=-0.140  Sum_probs=61.2

Q ss_pred             CCCeEEEEccccHHHHHHhcc----CCc--EEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCC
Q psy8015          26 KRLDCLALTSNTKQSTTLPTF----IPN--SFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAY   99 (165)
Q Consensus        26 ~~~~vLei~GsG~~t~~la~~----~~~--V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~   99 (165)
                      .+++||=+ |.|..+..-++.    ..+  |++-+.+++..+.+.     ..+++++..+-...  +...+|++++....
T Consensus        11 ~~k~vlVv-G~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~--dl~~~~lv~~at~d   82 (113)
T d1pjqa1          11 RDRDCLIV-GGGDVAERKARLLLEAGARLTVNALTFIPQFTVWAN-----EGMLTLVEGPFDET--LLDSCWLAIAATDD   82 (113)
T ss_dssp             BTCEEEEE-CCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHT-----TTSCEEEESSCCGG--GGTTCSEEEECCSC
T ss_pred             CCCEEEEE-CCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHh-----cCCceeeccCCCHH--HhCCCcEEeecCCC
Confidence            57889888 888888666654    234  445566777666553     23577777654332  23468999887777


Q ss_pred             CCchHHHHhccccCcEEEEEecCC
Q psy8015         100 PRYPEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus       100 ~~~p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      +.+-..+.+..|+-|++|-.+..+
T Consensus        83 ~~~n~~i~~~a~~~~ilVNv~D~p  106 (113)
T d1pjqa1          83 DTVNQRVSDAAESRRIFCNVVDAP  106 (113)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETTCT
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCCh
Confidence            777778888889999987766543

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.33  E-value=0.48  Score=34.66  Aligned_cols=92  Identities=11%  Similarity=-0.073  Sum_probs=60.2

Q ss_pred             CCeEEEE-ccccH----HHHHHhcc-CCcEEEEeCCHHHHHhcc--cccCCCCCeEEEEccCCCCC----------CCCC
Q psy8015          27 RLDCLAL-TSNTK----QSTTLPTF-IPNSFNINVYYYLSGGPL--SSTIDPDHDYDLIADGRASF----------GDNG   88 (165)
Q Consensus        27 ~~~vLei-~GsG~----~t~~la~~-~~~V~aiD~~~~~~~~A~--~~~~~~~nV~~~~gD~~~~~----------~~~~   88 (165)
                      |+||.=| -|++-    .+..|++. ..+|+..+++++-++.+.  ++..+ .++.++..|..+.-          ...+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dvs~~~sv~~~~~~~~~~~g   80 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG-LSPRFHQLDIDDLQSIRALRDFLRKEYG   80 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT-CCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence            6788777 33333    33456655 568999999999988774  55444 36899999975310          1136


Q ss_pred             CccEEEEcCCCCC------ch-H------------------HHHhccccCcEEEEE
Q psy8015          89 PYDAIHVGAAYPR------YP-E------------------IFIHHLKSGGRLVIP  119 (165)
Q Consensus        89 ~fD~I~i~~~~~~------~p-~------------------~l~~~LkpgG~lvi~  119 (165)
                      +.|+++.+++...      .. +                  .+...|+++|+++..
T Consensus        81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni  136 (275)
T d1wmaa1          81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV  136 (275)
T ss_dssp             SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            8999998876531      11 1                  245777889997765

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=86.81  E-value=0.42  Score=35.71  Aligned_cols=108  Identities=10%  Similarity=0.028  Sum_probs=73.3

Q ss_pred             chHHHHHHHHHHhcCCCCCeEEEE-ccccHHHHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCC----C
Q psy8015          10 VSGAVAKYVTYLSGHSKRLDCLAL-TSNTKQSTTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRAS----F   84 (165)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLei-~GsG~~t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~----~   84 (165)
                      .+.....+++.+....++ .-+.. .||-.++..+.+--.+.+..|..++-.+.-+..-.+-.++++...|++++    +
T Consensus        67 ~p~~~~~yl~~v~~~n~~-~~l~~YPGSP~ia~~llR~~Drl~l~ELHp~e~~~L~~~~~~~~~~~v~~~DG~~~l~all  145 (271)
T d2oo3a1          67 LPSLFLEYISVIKQINLN-STLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALL  145 (271)
T ss_dssp             SCGGGHHHHHHHHHHSSS-SSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHC
T ss_pred             hhhhHHHHHHHHHHhCCC-CCcCcCCCCHHHHHHhCCCCCceEEeecCHHHHHHHHHHhccCCCceEEcCchHHHHHhhC
Confidence            445556666666543333 23579 99999999999999999999999998886652222346899999998753    4


Q ss_pred             CCCCCccEEEEcCCCCCch------HHHHhccc--cCcEEEE
Q psy8015          85 GDNGPYDAIHVGAAYPRYP------EIFIHHLK--SGGRLVI  118 (165)
Q Consensus        85 ~~~~~fD~I~i~~~~~~~p------~~l~~~Lk--pgG~lvi  118 (165)
                      |+..+==+|+++.+++.-.      +.+.+.+|  |.|...+
T Consensus       146 PP~~rRgLVLIDPpYE~k~ey~~v~~~l~~a~kr~~~g~~~i  187 (271)
T d2oo3a1         146 PPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCV  187 (271)
T ss_dssp             SCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             CCCCCceEEEecCCcCCHHHHHHHHHHHHHHHHhCCCceEEE
Confidence            4444556899998886432      22333333  5677666

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=85.98  E-value=0.55  Score=31.51  Aligned_cols=78  Identities=10%  Similarity=-0.050  Sum_probs=44.6

Q ss_pred             cccHHHHHHhc----cCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCC---chHHHH
Q psy8015          35 SNTKQSTTLPT----FIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPR---YPEIFI  107 (165)
Q Consensus        35 GsG~~t~~la~----~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~---~p~~l~  107 (165)
                      |.|.++..+|+    ...+|+++|++++.++.|+..  +.-+  ....+. +   .....|+|++......   +-+++.
T Consensus         7 G~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~--~~~~--~~~~~~-~---~~~~~DiIilavp~~~~~~vl~~l~   78 (165)
T d2f1ka2           7 GLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER--QLVD--EAGQDL-S---LLQTAKIIFLCTPIQLILPTLEKLI   78 (165)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT--TSCS--EEESCG-G---GGTTCSEEEECSCHHHHHHHHHHHG
T ss_pred             eecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHh--hccc--eeeeec-c---cccccccccccCcHhhhhhhhhhhh
Confidence            77877665554    457899999999998877522  2211  111121 1   1246899998543322   223455


Q ss_pred             hccccCcEEEEEec
Q psy8015         108 HHLKSGGRLVIPIG  121 (165)
Q Consensus       108 ~~LkpgG~lvi~~~  121 (165)
                      ..|+++ .+++.+.
T Consensus        79 ~~l~~~-~iv~~~~   91 (165)
T d2f1ka2          79 PHLSPT-AIVTDVA   91 (165)
T ss_dssp             GGSCTT-CEEEECC
T ss_pred             hhcccc-cceeecc
Confidence            555554 4556554

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=84.55  E-value=0.45  Score=32.10  Aligned_cols=82  Identities=5%  Similarity=-0.110  Sum_probs=45.8

Q ss_pred             ccccHHHHHHh----ccCCcEEEEeCCHHHHHhccccc---CCCCCeEEE------EccCCCCCCCCCCccEEEEcCCCC
Q psy8015          34 TSNTKQSTTLP----TFIPNSFNINVYYYLSGGPLSST---IDPDHDYDL------IADGRASFGDNGPYDAIHVGAAYP  100 (165)
Q Consensus        34 ~GsG~~t~~la----~~~~~V~aiD~~~~~~~~A~~~~---~~~~nV~~~------~gD~~~~~~~~~~fD~I~i~~~~~  100 (165)
                      .|.|.++..+|    +...+|+.+|++++-++..+...   ...+..+..      ..|..+.   ....|+|++.-...
T Consensus         7 iGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~~aD~iii~v~~~   83 (184)
T d1bg6a2           7 LGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---VKDADVILIVVPAI   83 (184)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---HTTCSEEEECSCGG
T ss_pred             ECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH---hcCCCEEEEEEchh
Confidence            47776654444    44579999999998888764110   001111111      1121111   24689999964333


Q ss_pred             ---CchHHHHhccccCcEEEE
Q psy8015         101 ---RYPEIFIHHLKSGGRLVI  118 (165)
Q Consensus       101 ---~~p~~l~~~LkpgG~lvi  118 (165)
                         .+.+++...|+++-.++.
T Consensus        84 ~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          84 HHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             GHHHHHHHHGGGCCTTCEEEE
T ss_pred             HHHHHHHHhhhccCCCCEEEE
Confidence               233567778888776554

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=84.44  E-value=0.098  Score=38.10  Aligned_cols=52  Identities=15%  Similarity=0.104  Sum_probs=35.9

Q ss_pred             CeEEEEccCCCCCC--CCCCccEEEEcCCCCC----------c-------hHHHHhccccCcEEEEEecCC
Q psy8015          72 HDYDLIADGRASFG--DNGPYDAIHVGAAYPR----------Y-------PEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        72 nV~~~~gD~~~~~~--~~~~fD~I~i~~~~~~----------~-------p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      +-.++.||..+.+.  +++++|+||.+.....          +       .+++.+.|||+|.+++.++..
T Consensus         4 ~~~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~   74 (279)
T d1eg2a_           4 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ   74 (279)
T ss_dssp             EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred             cceEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCcc
Confidence            34677888765321  2478999999875421          1       135789999999999987643

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=83.50  E-value=0.5  Score=28.89  Aligned_cols=83  Identities=5%  Similarity=-0.129  Sum_probs=46.3

Q ss_pred             CCCeEEEE--ccccHH-HHHHhccCCcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCCc
Q psy8015          26 KRLDCLAL--TSNTKQ-STTLPTFIPNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRY  102 (165)
Q Consensus        26 ~~~~vLei--~GsG~~-t~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~  102 (165)
                      ++++|+=+  ..||.. +.+|++...+|+..|.++......+++    .++.+..+......  ...+|.|+++.+.+.-
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~d~vi~SPGi~~~   77 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP----EAVERHTGSLNDEW--LMAADLIVASPGIALA   77 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSC----TTSCEEESBCCHHH--HHHCSEEEECTTSCTT
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHh----hccceeecccchhh--hccCCEEEECCCCCCC
Confidence            57888888  456633 344555667999999865432222222    23455555432211  2468999999887643


Q ss_pred             hHHHHhccccCcE
Q psy8015         103 PEIFIHHLKSGGR  115 (165)
Q Consensus       103 p~~l~~~LkpgG~  115 (165)
                      .+.+ ...+..|.
T Consensus        78 ~~~~-~~a~~~gi   89 (93)
T d2jfga1          78 HPSL-SAAADAGI   89 (93)
T ss_dssp             SHHH-HHHHHTTC
T ss_pred             CHHH-HHHHHcCC
Confidence            3333 33344443

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=83.22  E-value=0.45  Score=31.59  Aligned_cols=88  Identities=10%  Similarity=-0.129  Sum_probs=47.1

Q ss_pred             eEEEEccccHHH----HHHhccCCcEEEEeCCHHHHHhcccccCCCCC-eEEEEccCCCCCCCCCCccEEEEcCCCCCch
Q psy8015          29 DCLALTSNTKQS----TTLPTFIPNSFNINVYYYLSGGPLSSTIDPDH-DYDLIADGRASFGDNGPYDAIHVGAAYPRYP  103 (165)
Q Consensus        29 ~vLei~GsG~~t----~~la~~~~~V~aiD~~~~~~~~A~~~~~~~~n-V~~~~gD~~~~~~~~~~fD~I~i~~~~~~~p  103 (165)
                      ||+=+ |.|.++    ..|++...+|+.++++++-.+..+....+... ......+..   .....+|.|++.-......
T Consensus         2 kI~Ii-GaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~D~iii~vka~~~~   77 (167)
T d1ks9a2           2 KITVL-GCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDP---DFLATSDLLLVTLKAWQVS   77 (167)
T ss_dssp             EEEEE-CCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCH---HHHHTCSEEEECSCGGGHH
T ss_pred             EEEEE-CcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchh---hhhcccceEEEeecccchH
Confidence            44445 556554    44455567899999988744433322222211 111222211   1235799999965554433


Q ss_pred             ---HHHHhccccCcEEEEEe
Q psy8015         104 ---EIFIHHLKSGGRLVIPI  120 (165)
Q Consensus       104 ---~~l~~~LkpgG~lvi~~  120 (165)
                         +.+...++++..++...
T Consensus        78 ~~~~~l~~~~~~~~~Iv~~q   97 (167)
T d1ks9a2          78 DAVKSLASTLPVTTPILLIH   97 (167)
T ss_dssp             HHHHHHHTTSCTTSCEEEEC
T ss_pred             HHHHhhccccCcccEEeecc
Confidence               35566777776666543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=82.84  E-value=0.63  Score=31.22  Aligned_cols=82  Identities=5%  Similarity=-0.055  Sum_probs=48.2

Q ss_pred             ccccHHHHHHhccC------CcEEEEeCCHHHHHhcccccCCCCCeEEEEccCCCCCCCCCCccEEEEcCCCCCc---hH
Q psy8015          34 TSNTKQSTTLPTFI------PNSFNINVYYYLSGGPLSSTIDPDHDYDLIADGRASFGDNGPYDAIHVGAAYPRY---PE  104 (165)
Q Consensus        34 ~GsG~~t~~la~~~------~~V~aiD~~~~~~~~A~~~~~~~~nV~~~~gD~~~~~~~~~~fD~I~i~~~~~~~---p~  104 (165)
                      -|.|.++..+|+..      .+|+++|.+++.++.|+..  +.  +.....+...  ......|+|++......+   .+
T Consensus         7 IG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~--~~--~~~~~~~~~~--~~~~~~dlIila~p~~~~~~vl~   80 (171)
T d2g5ca2           7 VGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL--GI--IDEGTTSIAK--VEDFSPDFVMLSSPVRTFREIAK   80 (171)
T ss_dssp             ESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT--TS--CSEEESCGGG--GGGTCCSEEEECSCHHHHHHHHH
T ss_pred             EccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh--hc--chhhhhhhhh--hhccccccccccCCchhhhhhhh
Confidence            37788877776532      3799999999999988622  22  1111112111  112357999986655433   34


Q ss_pred             HHHhccccCcEEEEEecC
Q psy8015         105 IFIHHLKSGGRLVIPIGD  122 (165)
Q Consensus       105 ~l~~~LkpgG~lvi~~~~  122 (165)
                      ++.+.++++ .+++.+..
T Consensus        81 ~l~~~~~~~-~ii~d~~s   97 (171)
T d2g5ca2          81 KLSYILSED-ATVTDQGS   97 (171)
T ss_dssp             HHHHHSCTT-CEEEECCS
T ss_pred             hhhcccccc-cccccccc
Confidence            566777765 45555543

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=80.45  E-value=0.51  Score=34.54  Aligned_cols=52  Identities=17%  Similarity=0.310  Sum_probs=37.8

Q ss_pred             CCeEEEEccCCC---CCCCCCCccEEEEcCCCCC---c-----------------hHHHHhccccCcEEEEEecCC
Q psy8015          71 DHDYDLIADGRA---SFGDNGPYDAIHVGAAYPR---Y-----------------PEIFIHHLKSGGRLVIPIGDT  123 (165)
Q Consensus        71 ~nV~~~~gD~~~---~~~~~~~fD~I~i~~~~~~---~-----------------p~~l~~~LkpgG~lvi~~~~~  123 (165)
                      ++-++++||..+   .++ .+++|+|+.+.....   .                 ..++.+.|+|+|.+++.+.+.
T Consensus        11 ~~~~l~~GD~le~l~~l~-~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~~   85 (320)
T d1booa_          11 SNGSMYIGDSLELLESFP-EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA   85 (320)
T ss_dssp             SSEEEEESCHHHHGGGSC-SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             CCCEEEehhHHHHHhhCc-cCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccch
Confidence            356899999764   333 578999999865421   0                 125689999999999988654