Psyllid ID: psy8023

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYLLS
Secondary Structure (PSIPRED)
ccHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHccccccccccEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHccHHHHHcccEEEEEccccEEEEEc
Coil and Loop (DISEMBL)
MMNARALELLKdnlkpgakvldigsgsgyLTACFADLvgsngevtaVELIPEVLQFTHYniqqgnpellpnikfepqtgegdiqylls
Flexible Loop (DISEMBL)
MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIkfepqtgegdiqylls
Low Complexity Region (SEG)
MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYLLS
Disordered region (IsUnstruct)
**************KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNI****************
Disordered Region (DISOPRED)
MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL**
Disordered Region (DISEMBL)
MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYLLS
Disordered Region (DISPRO)
MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYLLS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYLLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	88	2.2.26 [Sep-21-2011]
P23506	227	Protein-L-isoaspartate(D-	yes	N/A	0.954	0.370	0.452	8e-14
P22061	227	Protein-L-isoaspartate(D-	yes	N/A	0.954	0.370	0.452	9e-14
Q5RA89	227	Protein-L-isoaspartate(D-	yes	N/A	0.954	0.370	0.452	9e-14
Q4R5H0	227	Protein-L-isoaspartate(D-	N/A	N/A	0.954	0.370	0.452	9e-14
Q5F3N1	228	Protein-L-isoaspartate(D-	no	N/A	0.954	0.368	0.440	1e-13
P80895	227	Protein-L-isoaspartate(D-	yes	N/A	0.954	0.370	0.452	1e-13
P15246	227	Protein-L-isoaspartate(D-	yes	N/A	0.954	0.370	0.452	2e-13
P22062	227	Protein-L-isoaspartate(D-	yes	N/A	0.954	0.370	0.440	3e-13
Q42539	230	Protein-L-isoaspartate O-	yes	N/A	0.693	0.265	0.540	1e-12
Q43209	230	Protein-L-isoaspartate O-	N/A	N/A	0.704	0.269	0.532	1e-12

>sp|P23506|PIMT_MOUSE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Mus musculus GN=Pcmt1 PE=1 SV=3

 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 57/84 (67%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M+A ALELL D L  GAK LD+GSGSG LTACFA +VG++G+V  ++ I E++  +  N+
Sbjct: 64  MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGNSGKVIGIDHIKELVDDSITNV 123

Query: 62  QQGNPELLPNIKFEPQTGEGDIQY 85
           ++ +P LL + +     G+G + Y
Sbjct: 124 KKDDPMLLSSGRVRLVVGDGRMGY 147

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 7EC: 7

>sp|P22061|PIMT_HUMAN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Homo sapiens GN=PCMT1 PE=1 SV=4

 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 56/84 (66%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M+A ALELL D L  GAK LD+GSGSG LTACFA +VG  G+V  ++ I E++  +  N+
Sbjct: 64  MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNV 123

Query: 62  QQGNPELLPNIKFEPQTGEGDIQY 85
           ++ +P LL + + +   G+G + Y
Sbjct: 124 RKDDPTLLSSGRVQLVVGDGRMGY 147

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q5RA89|PIMT_PONAB Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Pongo abelii GN=PCMT1 PE=2 SV=3

 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 56/84 (66%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M+A ALELL D L  GAK LD+GSGSG LTACFA +VG  G+V  ++ I E++  +  N+
Sbjct: 64  MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINNV 123

Query: 62  QQGNPELLPNIKFEPQTGEGDIQY 85
           ++ +P LL + + +   G+G + Y
Sbjct: 124 RKDDPTLLSSGRVQLVVGDGRMGY 147

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q4R5H0|PIMT_MACFA Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Macaca fascicularis GN=PCMT1 PE=2 SV=3

 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 56/84 (66%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M+A ALELL D L  GAK LD+GSGSG LTACFA +VG  G+V  ++ I E++  +  N+
Sbjct: 64  MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINNV 123

Query: 62  QQGNPELLPNIKFEPQTGEGDIQY 85
           ++ +P LL + + +   G+G + Y
Sbjct: 124 RKDDPTLLSSGRVQLVVGDGRMGY 147

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q5F3N1|PIMT_CHICK Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Gallus gallus GN=PCMT1 PE=2 SV=3

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 56/84 (66%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M+A ALELL D L  GAK LD+GSGSG LTACF+ +VG  G+V  ++ I E++  +  N+
Sbjct: 64  MHAYALELLSDQLHEGAKALDVGSGSGILTACFSRMVGPKGQVVGIDHIKELVDDSINNV 123

Query: 62  QQGNPELLPNIKFEPQTGEGDIQY 85
           ++ +P LL + + +   G+G + Y
Sbjct: 124 KKDDPTLLSSGRVKLIVGDGRMGY 147

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P80895|PIMT_PIG Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Sus scrofa GN=PCMT1 PE=1 SV=3

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 57/84 (67%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M+A ALELL D L  GAK LD+GSGSG LTACFA +VG +G+V  ++ I E++  +  N+
Sbjct: 64  MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNV 123

Query: 62  QQGNPELLPNIKFEPQTGEGDIQY 85
           ++ +P LL + + +   G+G + Y
Sbjct: 124 RKDDPMLLSSGRVQLVVGDGRMGY 147

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P15246|PIMT_BOVIN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Bos taurus GN=PCMT1 PE=1 SV=2

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 57/84 (67%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M+A ALELL D L  GAK LD+GSGSG LTACFA +VG +G+V  ++ I E++  +  N+
Sbjct: 64  MHAYALELLFDQLNEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNV 123

Query: 62  QQGNPELLPNIKFEPQTGEGDIQY 85
           ++ +P LL + + +   G+G + Y
Sbjct: 124 RKDDPMLLSSGRVQLVVGDGRMGY 147

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P22062|PIMT_RAT Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Rattus norvegicus GN=Pcmt1 PE=1 SV=2

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 56/84 (66%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M+A ALELL D L  GAK LD+GSGSG LTACFA +VG +G+V  ++ I E++  +  N+
Sbjct: 64  MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGHSGKVIGIDHIKELVDDSITNV 123

Query: 62  QQGNPELLPNIKFEPQTGEGDIQY 85
           ++ +P LL + +     G+G + +
Sbjct: 124 KKDDPMLLSSGRVRLVVGDGRMGF 147

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q42539|PIMT_ARATH Protein-L-isoaspartate O-methyltransferase OS=Arabidopsis thaliana GN=PCM PE=2 SV=3

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 46/61 (75%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M+A  L+LL+ +LKPG +VLD+GSG+GYLTACFA +VG+ G    VE IPE++  +  NI
Sbjct: 69  MHAMCLQLLEKHLKPGMRVLDVGSGTGYLTACFAVMVGTEGRAIGVEHIPELVASSVKNI 128

Query: 62  Q 62
           +
Sbjct: 129 E 129

Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. This enzyme does not act on D-aspartyl residues.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q43209|PIMT_WHEAT Protein-L-isoaspartate O-methyltransferase OS=Triticum aestivum GN=PCM PE=1 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 44/62 (70%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M+A  LELLKD L+PG   LD+GSGSGYLTACFA +VG  G    +E IPE++  +  N+
Sbjct: 69  MHATCLELLKDYLQPGMHALDVGSGSGYLTACFAMMVGPEGRAVGIEHIPELVVASTENV 128

Query: 62  QQ 63
           ++
Sbjct: 129 ER 130

Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. This enzyme does not act on D-aspartyl residues.

Triticum aestivum (taxid: 4565)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
383856863	268	PREDICTED: protein-L-isoaspartate(D-aspa	0.954	0.313	0.5	2e-15
432936867	249	PREDICTED: protein-L-isoaspartate(D-aspa	0.954	0.337	0.488	2e-15
226443368	249	Protein-L-isoaspartateD-aspartate O-meth	0.954	0.337	0.488	4e-15
195997337	230	hypothetical protein TRIADDRAFT_49594 [T	0.977	0.373	0.476	5e-15
357618961	225	L-isoaspartyl protein carboxyl methyltra	0.954	0.373	0.488	6e-15
348531162	246	PREDICTED: protein-L-isoaspartate(D-aspa	0.954	0.341	0.488	7e-15
339239031	290	protein-L-isoaspartate(D-aspartate) O-me	0.954	0.289	0.464	1e-14
328711519	228	PREDICTED: protein-L-isoaspartate(D-aspa	0.931	0.359	0.487	2e-14
339260242	190	protein-L-isoaspartate(D-aspartate) O-me	0.954	0.442	0.464	2e-14
340728321	245	PREDICTED: protein-L-isoaspartate(D-aspa	0.954	0.342	0.488	2e-14

>gi|383856863|ref|XP_003703926.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Megachile rotundata]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 58/84 (69%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M+A ALE+L+D L+ GA+ LD+GSGSGYLTAC A ++G NG    ++ IPE+  F   NI
Sbjct: 107 MHAYALEILEDKLRDGARALDVGSGSGYLTACMAMMLGPNGLAIGIDHIPELKSFAISNI 166

Query: 62  QQGNPELLPNIKFEPQTGEGDIQY 85
           Q+ NPELL + + E   G+G + Y
Sbjct: 167 QRDNPELLKSGRVELVVGDGRLGY 190

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432936867|ref|XP_004082318.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Oryzias latipes]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 55/84 (65%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M+A ALELL D L  GA  LD+GSGSGYLTACFA + G +G V  +E I E++Q +  N+
Sbjct: 85  MHAHALELLSDKLSAGASALDVGSGSGYLTACFAQMTGQSGRVVGIEHIEELVQMSIKNV 144

Query: 62  QQGNPELLPNIKFEPQTGEGDIQY 85
           Q  +PELL + +     G+G + Y
Sbjct: 145 QADDPELLSSGRIRLLVGDGRLGY 168

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|226443368|ref|NP_001140111.1| Protein-L-isoaspartateD-aspartate O-methyltransferase precursor [Salmo salar] gi|221222218|gb|ACM09770.1| Protein-L-isoaspartateD-aspartate O-methyltransferase [Salmo salar]

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 57/84 (67%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M+A ALE+L D L  GA  LD+GSGSGYLTACFA +VG +G+V  +E I E++Q +  N+
Sbjct: 85  MHAHALEVLSDKLMDGASALDVGSGSGYLTACFARMVGPSGKVVGIEHIDELVQTSVRNV 144

Query: 62  QQGNPELLPNIKFEPQTGEGDIQY 85
           Q  +PELL + +     G+G + Y
Sbjct: 145 QADDPELLSSGRIRLVVGDGRLGY 168

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195997337|ref|XP_002108537.1| hypothetical protein TRIADDRAFT_49594 [Trichoplax adhaerens] gi|190589313|gb|EDV29335.1| hypothetical protein TRIADDRAFT_49594 [Trichoplax adhaerens]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 59/86 (68%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M+A AL++L  NLK G  +LD+GSGSGYLTAC A +VGS+G+V  +E IPE++  +  NI
Sbjct: 64  MHAHALQVLASNLKEGCTILDVGSGSGYLTACMAMMVGSSGKVYGIEHIPELISLSRNNI 123

Query: 62  QQGNPELLPNIKFEPQTGEGDIQYLL 87
            + NP LL + + +   G+G + Y L
Sbjct: 124 NKFNPSLLESDRIQLIVGDGRLGYEL 149

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|357618961|gb|EHJ71745.1| L-isoaspartyl protein carboxyl methyltransferase [Danaus plexippus]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 54/84 (64%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M+A ALE LK+ L PG K LD+GSGSGYLTAC A +VG +G V  +E IPE++     NI
Sbjct: 64  MHAHALERLKNQLVPGEKALDVGSGSGYLTACMAHMVGESGRVIGIEHIPELVTLATKNI 123

Query: 62  QQGNPELLPNIKFEPQTGEGDIQY 85
              NP+LL + +     G+G + Y
Sbjct: 124 NHDNPKLLSSERIRLIVGDGRLGY 147

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348531162|ref|XP_003453079.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Oreochromis niloticus]

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 55/84 (65%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M+A ALELL D L  GA  LD+GSGSGYLTACFA + G  G V  +E I E++Q +  N+
Sbjct: 85  MHAHALELLGDKLTEGASALDVGSGSGYLTACFARMTGPTGRVVGIEHIDELVQMSIKNV 144

Query: 62  QQGNPELLPNIKFEPQTGEGDIQY 85
           Q  +PELL + + +   G+G + Y
Sbjct: 145 QADDPELLSSGRIKLVVGDGRLGY 168

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|339239031|ref|XP_003381070.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Trichinella spiralis] gi|316975942|gb|EFV59314.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Trichinella spiralis]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 61/84 (72%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M+A ALE+LKD+L  G + LD+GSGSGYLTACFA ++G++G+   +E IP++++ +  N+
Sbjct: 122 MHAYALEMLKDHLTEGNRALDVGSGSGYLTACFAIMLGNSGKAVGIEHIPQLVEKSIQNV 181

Query: 62  QQGNPELLPNIKFEPQTGEGDIQY 85
           + GNPELL + + +   G+G   Y
Sbjct: 182 RNGNPELLSSGRVKLIVGDGRDGY 205

Source: Trichinella spiralis

Species: Trichinella spiralis

Genus: Trichinella

Family: Trichinellidae

Order: Trichocephalida

Class: Enoplea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|328711519|ref|XP_001946333.2| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Acyrthosiphon pisum]

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 59/82 (71%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M+A ALELLKD L  G + LDIGSGSGYLTAC A ++G NG+   ++ IPE+++ +  N+
Sbjct: 64  MHAYALELLKDQLVEGERALDIGSGSGYLTACMATMLGENGKAVGIDHIPELVEKSLENV 123

Query: 62  QQGNPELLPNIKFEPQTGEGDI 83
           ++ NPELL + +   +TG+G +
Sbjct: 124 KKDNPELLNSQRVILETGDGRL 145

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|339260242|ref|XP_003368504.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Trichinella spiralis] gi|316963695|gb|EFV49180.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Trichinella spiralis]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 61/84 (72%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M+A ALE+LKD+L  G + LD+GSGSGYLTACFA ++G++G+   +E IP++++ +  N+
Sbjct: 17  MHAYALEMLKDHLTEGNRALDVGSGSGYLTACFAIMLGNSGKAVGIEHIPQLVEKSIQNV 76

Query: 62  QQGNPELLPNIKFEPQTGEGDIQY 85
           + GNPELL + + +   G+G   Y
Sbjct: 77  RNGNPELLSSGRVKLIVGDGRDGY 100

Source: Trichinella spiralis

Species: Trichinella spiralis

Genus: Trichinella

Family: Trichinellidae

Order: Trichocephalida

Class: Enoplea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|340728321|ref|XP_003402474.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like isoform 2 [Bombus terrestris]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 57/84 (67%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M+A ALE+L+D L  GA+ LD+GSGSGYLTAC A ++G+NG    +E I E+  F   NI
Sbjct: 84  MHAYALEILEDKLCDGARALDVGSGSGYLTACMAMMLGTNGLAIGIEHISELKSFAMQNI 143

Query: 62  QQGNPELLPNIKFEPQTGEGDIQY 85
           Q+ NPELL + + +   G+G + Y
Sbjct: 144 QRDNPELLESGRVQLVVGDGRLGY 167

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
UNIPROTKB|E1BXJ0	228	LOC423008 "Protein-L-isoaspart	0.909	0.350	0.5	2e-15
ZFIN|ZDB-GENE-040426-1738	249	pcmtl "l-isoaspartyl protein c	0.909	0.321	0.475	2.6e-15
UNIPROTKB|E2R3G3	286	PCMT1 "Protein-L-isoaspartate	0.954	0.293	0.464	1.9e-14
UNIPROTKB|G3MZZ6	228	PCMT1 "Protein-L-isoaspartate	0.954	0.368	0.452	4.9e-14
UNIPROTKB|P15246	227	PCMT1 "Protein-L-isoaspartate(	0.954	0.370	0.452	4.9e-14
UNIPROTKB|F1N9Y6	150	PCMT1 "Protein-L-isoaspartate	0.954	0.56	0.440	6.2e-14
UNIPROTKB|F1NJV4	197	PCMT1 "Protein-L-isoaspartate	0.954	0.426	0.440	6.2e-14
UNIPROTKB|Q5F3N1	228	PCMT1 "Protein-L-isoaspartate(	0.954	0.368	0.440	6.2e-14
UNIPROTKB|B7Z972	192	PCMT1 "Protein-L-isoaspartate	0.954	0.437	0.452	6.2e-14
UNIPROTKB|P22061	227	PCMT1 "Protein-L-isoaspartate(	0.954	0.370	0.452	6.2e-14

UNIPROTKB|E1BXJ0 LOC423008 "Protein-L-isoaspartate O-methyltransferase" [Gallus gallus (taxid:9031)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 40/80 (50%), Positives = 55/80 (68%)

Query:     2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
             M+A ALELLKD L  GAK LD+GSGSGYLTACFA +VG  G+   VE I E++  +  N+
Sbjct:    64 MHAHALELLKDQLVEGAKALDVGSGSGYLTACFARMVGPTGKAVGVEHIKELVNESIRNV 123

Query:    62 QQGNPELLPNIKFEPQTGEG 81
             ++ +P LL + + +   G+G
Sbjct:   124 KEDDPTLLSSGRVKLVVGDG 143

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-040426-1738 pcmtl "l-isoaspartyl protein carboxyl methyltransferase, like" [Danio rerio (taxid:7955)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 38/80 (47%), Positives = 55/80 (68%)

Query:     2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
             M+A ALE+L D L  GA  LD+GSGSGYLTACFA +VG +G+V  ++ I +++Q +  N+
Sbjct:    85 MHAHALEVLSDKLTEGASALDVGSGSGYLTACFARMVGPSGKVVGIDHIDQLVQSSVKNV 144

Query:    62 QQGNPELLPNIKFEPQTGEG 81
             Q  +PELL   + +   G+G
Sbjct:   145 QADDPELLATGRIKLVVGDG 164

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|E2R3G3 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Canis lupus familiaris (taxid:9615)]

 Score = 185 (70.2 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 39/84 (46%), Positives = 58/84 (69%)

Query:     2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
             M+A ALELL D L  GAK LD+GSGSG LTACFA +VGS+G+V  ++ I E++  +  N+
Sbjct:   122 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGSSGKVIGIDHIKELVDDSINNV 181

Query:    62 QQGNPELLPNIKFEPQTGEGDIQY 85
             ++ +P LL + + +   G+G + Y
Sbjct:   182 RKDDPVLLSSGRVQLVVGDGRMGY 205

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

UNIPROTKB|G3MZZ6 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Bos taurus (taxid:9913)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 38/84 (45%), Positives = 57/84 (67%)

Query:     2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
             M+A ALELL D L  GAK LD+GSGSG LTACFA +VG +G+V  ++ I E++  +  N+
Sbjct:    64 MHAYALELLFDQLNEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNV 123

Query:    62 QQGNPELLPNIKFEPQTGEGDIQY 85
             ++ +P LL + + +   G+G + Y
Sbjct:   124 RKDDPMLLSSGRVQLVVGDGRMGY 147

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

UNIPROTKB|P15246 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Bos taurus (taxid:9913)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 38/84 (45%), Positives = 57/84 (67%)

Query:     2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
             M+A ALELL D L  GAK LD+GSGSG LTACFA +VG +G+V  ++ I E++  +  N+
Sbjct:    64 MHAYALELLFDQLNEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNV 123

Query:    62 QQGNPELLPNIKFEPQTGEGDIQY 85
             ++ +P LL + + +   G+G + Y
Sbjct:   124 RKDDPMLLSSGRVQLVVGDGRMGY 147

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

UNIPROTKB|F1N9Y6 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Gallus gallus (taxid:9031)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 37/84 (44%), Positives = 56/84 (66%)

Query:     2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
             M+A ALELL D L  GAK LD+GSGSG LTACF+ +VG  G+V  ++ I E++  +  N+
Sbjct:    45 MHAYALELLSDQLHEGAKALDVGSGSGILTACFSRMVGPKGQVVGIDHIKELVDDSINNV 104

Query:    62 QQGNPELLPNIKFEPQTGEGDIQY 85
             ++ +P LL + + +   G+G + Y
Sbjct:   105 KKDDPTLLSSGRVKLIVGDGRMGY 128

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1NJV4 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Gallus gallus (taxid:9031)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 37/84 (44%), Positives = 56/84 (66%)

Query:     2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
             M+A ALELL D L  GAK LD+GSGSG LTACF+ +VG  G+V  ++ I E++  +  N+
Sbjct:    33 MHAYALELLSDQLHEGAKALDVGSGSGILTACFSRMVGPKGQVVGIDHIKELVDDSINNV 92

Query:    62 QQGNPELLPNIKFEPQTGEGDIQY 85
             ++ +P LL + + +   G+G + Y
Sbjct:    93 KKDDPTLLSSGRVKLIVGDGRMGY 116

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5F3N1 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Gallus gallus (taxid:9031)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 37/84 (44%), Positives = 56/84 (66%)

Query:     2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
             M+A ALELL D L  GAK LD+GSGSG LTACF+ +VG  G+V  ++ I E++  +  N+
Sbjct:    64 MHAYALELLSDQLHEGAKALDVGSGSGILTACFSRMVGPKGQVVGIDHIKELVDDSINNV 123

Query:    62 QQGNPELLPNIKFEPQTGEGDIQY 85
             ++ +P LL + + +   G+G + Y
Sbjct:   124 KKDDPTLLSSGRVKLIVGDGRMGY 147

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|B7Z972 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 38/84 (45%), Positives = 56/84 (66%)

Query:     2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
             M+A ALELL D L  GAK LD+GSGSG LTACFA +VG  G+V  ++ I E++  +  N+
Sbjct:    29 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNV 88

Query:    62 QQGNPELLPNIKFEPQTGEGDIQY 85
             ++ +P LL + + +   G+G + Y
Sbjct:    89 RKDDPTLLSSGRVQLVVGDGRMGY 112

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|P22061 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 38/84 (45%), Positives = 56/84 (66%)

Query:     2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
             M+A ALELL D L  GAK LD+GSGSG LTACFA +VG  G+V  ++ I E++  +  N+
Sbjct:    64 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNV 123

Query:    62 QQGNPELLPNIKFEPQTGEGDIQY 85
             ++ +P LL + + +   G+G + Y
Sbjct:   124 RKDDPTLLSSGRVQLVVGDGRMGY 147

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=TAS

GO:0030091 "protein repair" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0006479 "protein methylation" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q42539	PIMT_ARATH	2, ., 1, ., 1, ., 7, 7	0.5409	0.6931	0.2652	yes	N/A
A6UWM1	PIMT_META3	2, ., 1, ., 1, ., 7, 7	0.5348	0.4886	0.1990	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!
4th Layer	2.1.1.77	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	88
pfam01135	210	pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat	4e-18
TIGR00080	215	TIGR00080, pimt, protein-L-isoaspartate(D-aspartat	2e-14
COG2518	209	COG2518, Pcm, Protein-L-isoaspartate carboxylmethy	7e-13
PRK13942	212	PRK13942, PRK13942, protein-L-isoaspartate O-methy	3e-11
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	9e-10
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	9e-09
COG2519	256	COG2519, GCD14, tRNA(1-methyladenosine) methyltran	1e-08
PRK00312	212	PRK00312, pcm, protein-L-isoaspartate O-methyltran	3e-08
TIGR02469	124	TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer	6e-08
PRK00377	198	PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr	6e-08
TIGR04364	394	TIGR04364, methyltran_FxLD, methyltransferase, FxL	7e-08
PRK13944	205	PRK13944, PRK13944, protein-L-isoaspartate O-methy	2e-07
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	5e-07
COG2242	187	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme	2e-06
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	2e-06
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	2e-06
PRK13943	322	PRK13943, PRK13943, protein-L-isoaspartate O-methy	3e-06
PRK11873	272	PRK11873, arsM, arsenite S-adenosylmethyltransfera	5e-06
pfam01209	233	pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf	6e-06
pfam01269	229	pfam01269, Fibrillarin, Fibrillarin	9e-06
TIGR04188	363	TIGR04188, methyltr_grsp, methyltransferase, ATP-g	1e-05
COG4798	238	COG4798, COG4798, Predicted methyltransferase [Gen	2e-05
TIGR02021	219	TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m	2e-05
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	2e-05
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	4e-05
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	5e-05
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	8e-05
COG2890	280	COG2890, HemK, Methylase of polypeptide chain rele	9e-05
TIGR03534	251	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met	1e-04
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	2e-04
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	2e-04
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	2e-04
pfam00398	254	pfam00398, RrnaAD, Ribosomal RNA adenine dimethyla	3e-04
PRK09328	275	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth	6e-04
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	7e-04
smart00650	169	smart00650, rADc, Ribosomal RNA adenine dimethylas	0.001
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	0.001
TIGR01934	223	TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone	0.001
TIGR01444	144	TIGR01444, fkbM_fam, methyltransferase, FkbM famil	0.001
PRK00517	250	PRK00517, prmA, ribosomal protein L11 methyltransf	0.002
PRK14967	223	PRK14967, PRK14967, putative methyltransferase; Pr	0.002
pfam06325	294	pfam06325, PrmA, Ribosomal protein L11 methyltrans	0.002
COG2264	300	COG2264, PrmA, Ribosomal protein L11 methylase [Tr	0.003
TIGR00438	188	TIGR00438, rrmJ, cell division protein FtsJ	0.004
PRK11188	209	PRK11188, rrmJ, 23S rRNA methyltransferase J; Prov	0.004

>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)

 Score = 74.3 bits (183), Expect = 4e-18
 Identities = 33/51 (64%), Positives = 40/51 (78%), Gaps = 2/51 (3%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPE 52
           M+A  LELL+  LKPG +VL+IGSGSGYLTACFA +VG  G V ++E IPE
Sbjct: 61  MHAMMLELLE--LKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPE 109

Length = 210

>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate) O-methyltransferase

 Score = 64.5 bits (157), Expect = 2e-14
 Identities = 28/52 (53%), Positives = 37/52 (71%), Gaps = 2/52 (3%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEV 53
           M A   ELL+  LKPG KVL+IG+GSGY  A  A++VG +G V ++E IPE+
Sbjct: 65  MVAMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPEL 114

This is an all-kingdom (but not all species) full-length ortholog enzyme for repairing aging proteins. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt [Protein fate, Protein modification and repair]. Length = 215

>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 60.7 bits (148), Expect = 7e-13
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 5/62 (8%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M AR L+LL+  LKPG +VL+IG+GSGY  A  A LV   G V ++E I E+ +    N+
Sbjct: 60  MVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNL 114

Query: 62  QQ 63
           + 
Sbjct: 115 ET 116

Length = 209

>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 56.6 bits (137), Expect = 3e-11
 Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M A   ELL  +LK G KVL+IG+GSGY  A  A++VG +G+V  +E IPE+ +     +
Sbjct: 64  MVAIMCELL--DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTL 121

Query: 62  QQ 63
           ++
Sbjct: 122 KK 123

Length = 212

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 51.3 bits (123), Expect = 9e-10
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 7/73 (9%)

Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIK 73
          LK G KVLD+G G+GYLT   A+ +G   EV  +++  E ++    N ++       N++
Sbjct: 1  LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLG---YENVE 57

Query: 74 FEPQTGEGDIQYL 86
          F     +GDI+ L
Sbjct: 58 FI----QGDIEEL 66

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 49.6 bits (119), Expect = 9e-09
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 4  ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
          AR  ELL   ++PG +VLD+G G G      A  VG  G V  ++    +L       ++
Sbjct: 9  ARTFELL--AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALA----KE 62

Query: 64 GNPELLPNIKFEPQTGEGDIQYL 86
              L PN++F      GD   L
Sbjct: 63 RAAGLGPNVEFV----RGDADGL 81

Length = 241

>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 13  NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
            + PG++VL+ G+GSG LTA  A  VG  G VT  E+  +  +    N+
Sbjct: 91  GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENL 139

Length = 256

>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase; Reviewed

 Score = 48.3 bits (116), Expect = 3e-08
 Identities = 26/51 (50%), Positives = 30/51 (58%), Gaps = 5/51 (9%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPE 52
           M AR  ELL   LKPG +VL+IG+GSGY  A  A LV     V +VE I  
Sbjct: 66  MVARMTELL--ELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKT 111

Length = 212

>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

 Score = 46.2 bits (110), Expect = 6e-08
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 12/83 (14%)

Query: 5  RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ- 63
          RAL L K  L+PG  + DIG+G+G +T   A LV  NG V A+E  PE L     N+++ 
Sbjct: 8  RALTLSKLRLRPGDVLWDIGAGTGSVTIEAARLVP-NGRVYAIERNPEALDLIERNLRRF 66

Query: 64 ----------GNPELLPNIKFEP 76
                      PE   ++  +P
Sbjct: 67 GVSNIVIVEGDAPEAPEDLLPDP 89

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124

>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

 Score = 47.1 bits (112), Expect = 6e-08
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 12/80 (15%)

Query: 5   RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN---- 60
           RAL L K  L+ G  +LDIG G+G +T   + LVG  G+V AV+   + +  T  N    
Sbjct: 29  RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF 88

Query: 61  --------IQQGNPELLPNI 72
                   I+   PE+L  I
Sbjct: 89  GVLNNIVLIKGEAPEILFTI 108

Length = 198

>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system

 Score = 47.4 bits (113), Expect = 7e-08
 Identities = 21/40 (52%), Positives = 30/40 (75%), Gaps = 1/40 (2%)

Query: 14  LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEV 53
           ++PG +VL+IGSG GY  A  A+LVG +GEVT V++  +V
Sbjct: 80  VEPGMRVLEIGSG-GYNAALLAELVGPSGEVTTVDIDEDV 118

Members of this family resemble occur regularly in the vicinity of lantibiotic biosynthesis enzymes and their probable target, the FxLD family of putative ribosomal natural product precursor (TIGR04363). Members resemble protein-L-isoaspartate O-methyltransferase (TIGR00080) and a predicted methyltranserase, TIGR04188, of another putative peptide modification system. Length = 394

>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 46.0 bits (109), Expect = 2e-07
 Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M A   EL++   +PG K+L++G+GSGY  A  A+ +   G+V  VE++ E+  +   NI
Sbjct: 60  MVAMMCELIEP--RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNI 117

Query: 62  QQ 63
           ++
Sbjct: 118 ER 119

Length = 205

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 43.5 bits (103), Expect = 5e-07
 Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFE 75
          PGA+VLDIG G+G L    A L      VT V+L PE+L+    N +     L P I F 
Sbjct: 1  PGARVLDIGCGTGSLAIELARLFP-GARVTGVDLSPEMLELARENAKLA---LGPRITFV 56

Query: 76 PQTGEGDIQYLLS 88
              +GD    L 
Sbjct: 57 ----QGDAPDALD 65

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 5  RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60
          RAL L K   +PG ++ DIG+G+G +T     L G +G V A+E   E L+    N
Sbjct: 23 RALTLSKLRPRPGDRLWDIGAGTGSIT-IEWALAGPSGRVIAIERDEEALELIERN 77

Length = 187

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 42.0 bits (99), Expect = 2e-06
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNI 72
          G +VLD G+GSG      A   G +  V  VEL PE        +          +
Sbjct: 1  GDRVLDPGAGSGAFLLAAARA-GPDARVVGVELDPEAAALARRRLALAGLAPRVRV 55

This family contains methyltransferase domains. Length = 117

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 8  ELLKDNL--KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51
           LL +N   K G +VL++G+GSG +    A       +V  V++ P
Sbjct: 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINP 55

Length = 188

>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 42.9 bits (101), Expect = 3e-06
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 13  NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
            L  G +VL+IG G+GY  A  + +VG  G V +VE   ++ +    N+++
Sbjct: 77  GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR 127

Length = 322

>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed

 Score = 42.2 bits (100), Expect = 5e-06
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 11/76 (14%)

Query: 13  NLKPGAKVLDIGSGSGYLTACF--ADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLP 70
            LKPG  VLD+GSG G+   CF  A  VG  G+V  V++ PE+L     N ++       
Sbjct: 74  ELKPGETVLDLGSGGGF--DCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT--- 128

Query: 71  NIKFEPQTGEGDIQYL 86
           N++F      G+I+ L
Sbjct: 129 NVEFR----LGEIEAL 140

Length = 272

>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family

 Score = 42.0 bits (99), Expect = 6e-06
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 10/72 (13%)

Query: 12  DNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTH--------YNIQ- 62
             +K G K LD+  G+G  T   +D  GS+G+V  +++   +L+           YNI+ 
Sbjct: 43  MGVKRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEF 102

Query: 63  -QGNPELLPNIK 73
            QGN E LP   
Sbjct: 103 LQGNAEELPFED 114

Length = 233

>gnl|CDD|201699 pfam01269, Fibrillarin, Fibrillarin

 Score = 41.4 bits (98), Expect = 9e-06
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 10  LKDN-LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEV 53
           L +  +KPG+KVL +G+ SG   +  +D+VG  G V AVE  P V
Sbjct: 66  LDNIPIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRV 110

Length = 229

>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide maturase system

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 4   ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEV 53
           AR LE L  +++ G +VL+IG+G+GY  A     +G +  VT+VE+ P +
Sbjct: 97  ARMLEAL--DVEDGHRVLEIGTGTGYSAALLCHRLGDDN-VTSVEVDPGL 143

Members of this protein family are predicted SAM-dependent methyltransferases that regularly occur in the context of a putative peptide modification ATP-grasp enzyme (TIGR04187, related to enzymes of microviridin maturation) and a putative ribosomal peptide modification target (TIGR04186). Length = 363

>gnl|CDD|227135 COG4798, COG4798, Predicted methyltransferase [General function prediction only]

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAV 47
          LKPGA V+D+  G GY T  F+  VG  G+V A 
Sbjct: 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAY 79

Length = 238

>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 9/76 (11%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M  + L+ L  +   G +VLD G G+G L+   A        V AV++  +++Q      
Sbjct: 41  MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAK---RGAIVKAVDISEQMVQMA---- 93

Query: 62  QQGNPELLP--NIKFE 75
           +          N++FE
Sbjct: 94  RNRAQGRDVAGNVEFE 109

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 39.0 bits (91), Expect = 2e-05
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKF 74
          +VLD+G G+G L    A   G    VT V++ P  L+           +   N++ 
Sbjct: 1  RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLAD---NVEV 51

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 39.7 bits (93), Expect = 4e-05
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 14  LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
           +KPG+KVL +G+ SG   +  +DLVG  G V AVE 
Sbjct: 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEF 165

Length = 293

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 38.0 bits (89), Expect = 5e-05
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 21 LDIGSGSGYLTACFADLVGSNGEVTAVELIPEVL----QFTHYNIQQGNPELLP 70
          LD+G G+G L    A   G+   VT V+L PE+L    +        G+ E LP
Sbjct: 1  LDVGCGTGLLAEALARRGGAR--VTGVDLSPEMLALARKRAPRKFVVGDAEDLP 52

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 38.6 bits (91), Expect = 8e-05
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAV 47
           ++PG KVLD+  G+G L    A  VG  GEV  +
Sbjct: 48 GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGL 82

Length = 239

>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

 Score = 38.9 bits (91), Expect = 9e-05
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 7   LELLKDNLKPGAK-VLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ 62
           +E     L    K +LD+G+GSG +    A   G + EV AV++ P+ L     N +
Sbjct: 100 VEAALALLLQLDKRILDLGTGSGAIAIALA-KEGPDAEVIAVDISPDALALARENAE 155

Length = 280

>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific

 Score = 37.8 bits (89), Expect = 1e-04
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 6   ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65
           ALE LK       +VLD+G+GSG +    A     +  VTAV++ PE L     N  +  
Sbjct: 80  ALERLKKG---PLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLG 135

Query: 66  PELLPNIKF 74
              L N++F
Sbjct: 136 ---LDNVEF 141

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 14  LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ 62
           L    ++L+IG+  GY     A  +  +G +T +E   E  +    N+ 
Sbjct: 57  LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA 105

Length = 219

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 2  MNARALELLKDNLKP-GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF--TH 58
          M  R L LLK+      A VLDIG G+GYLT           E  A ++   +L    T 
Sbjct: 19 MAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKR-FPQAEFIANDISAGMLAQAKTK 77

Query: 59 YNIQ----QGNPELLP 70
           +       G+ E LP
Sbjct: 78 LSENVQFICGDAEKLP 93

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAV 47
           +KPG KVLD+  G+G +    A  VG  GEV  +
Sbjct: 48 GIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGL 81

Length = 238

>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFT 57
          NL+    VL+IG G G LT   A        V A+E+ P + +  
Sbjct: 26 NLQESDTVLEIGPGKGALTTELAKRAKQ---VVAIEIDPRLAKRL 67

Length = 254

>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 6   ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65
           ALE L   LK   +VLD+G+GSG +    A     + EVTAV++ PE L     N + G 
Sbjct: 100 ALEAL--LLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGL 156

Query: 66  PELLPNIKF 74
                 ++F
Sbjct: 157 ---GARVEF 162

Length = 275

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 35.9 bits (83), Expect = 7e-04
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 4  ARALELLKDNLKPGAKVLDIGSGSGYLTACFAD 36
          AR L  L   LKPG +VLDIG G+G L     +
Sbjct: 10 ARLLARLLPRLKPGGRVLDIGCGTGILLRLLRE 42

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases

 Score = 35.2 bits (82), Expect = 0.001
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 3/37 (8%)

Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
          NL+PG  VL+IG G G LT    +L+     VTA+E+
Sbjct: 10 NLRPGDTVLEIGPGKGALT---EELLERAKRVTAIEI 43

Length = 169

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 35.2 bits (82), Expect = 0.001
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 8  ELLKDNL--KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65
           LL  +L    G KVLD+G G G L A  A     + EVT V++    L+    N+    
Sbjct: 21 RLLLSHLPKPLGGKVLDLGCGYGVLGAALAKR-SPDLEVTMVDINARALESARANLAANG 79

Query: 66 PE 67
           E
Sbjct: 80 LE 81

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases

 Score = 35.3 bits (82), Expect = 0.001
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKF 74
            G KVLD+  G+G L    A      G+VT V+   E+L      + +   EL  NI+F
Sbjct: 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEML-----EVAKKKSELPLNIEF 92

This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223

>gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family

 Score = 34.6 bits (80), Expect = 0.001
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 20 VLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEP 76
          V+D+G+  G  +  FA   G+ G V A E +P+  +    N+ + N   LPN+    
Sbjct: 2  VIDVGANIGDFSLYFA-RKGAEGRVIAFEPLPDAYEILEENV-KLNN--LPNVVLLN 54

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. Length = 144

>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed

 Score = 35.1 bits (82), Expect = 0.002
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 8/79 (10%)

Query: 7   LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNP 66
           LE L+  + PG  VLD+G GSG L A  A  +G   +V AV++ P+ ++    N +    
Sbjct: 110 LEALEKLVLPGKTVLDVGCGSGIL-AIAAAKLG-AKKVLAVDIDPQAVEAARENAE---- 163

Query: 67  ELLPNIKFEPQTGEGDIQY 85
             L  ++      +GD++ 
Sbjct: 164 --LNGVELNVYLPQGDLKA 180

Length = 250

>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 4  ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60
          A AL    + L PG +VLD+ +GSG L A  A   G+ G VTAV++    ++    N
Sbjct: 26 ADALA--AEGLGPGRRVLDLCTGSGAL-AVAAAAAGA-GSVTAVDISRRAVRSARLN 78

Length = 223

>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)

 Score = 34.5 bits (80), Expect = 0.002
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 7   LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
           LE L+  +KPG  VLD+G GSG L A  A  +G+  +V  V++ P  ++    N + 
Sbjct: 151 LEALESLVKPGETVLDVGCGSGIL-AIAALKLGA-KKVVGVDIDPVAVRAAKENAEL 205

This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294

>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 14/24 (58%), Positives = 16/24 (66%)

Query: 7   LELLKDNLKPGAKVLDIGSGSGYL 30
           LE L+  LK G  VLD+G GSG L
Sbjct: 153 LEALEKLLKKGKTVLDVGCGSGIL 176

Length = 300

>gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ

 Score = 34.0 bits (78), Expect = 0.004
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 11 KDNL-KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51
          K  L KPG  VLD+G+  G  +    + VG  G V AV+L P
Sbjct: 26 KFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP 67

Methylates the 23S rRNA. Previously known as cell division protein ftsJ.// Trusted cutoff too high? [SS 10/1/04] [Protein synthesis, tRNA and rRNA base modification]. Length = 188

>gnl|CDD|183025 PRK11188, rrmJ, 23S rRNA methyltransferase J; Provisional

 Score = 33.9 bits (78), Expect = 0.004
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 11 KDNL-KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP 51
           D L KPG  V+D+G+  G  +      +G  G V A +++P
Sbjct: 45 SDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86

Length = 209

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.69
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.68
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.64
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.63
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.62
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.61
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.61
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.6
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.58
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.57
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.55
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.55
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.55
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.53
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.53
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.53
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.52
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.52
PRK07402	196	precorrin-6B methylase; Provisional	99.52
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.51
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.5
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.49
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.49
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.49
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.48
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.48
TIGR03438	301	probable methyltransferase. This model represents	99.48
PLN02244	340	tocopherol O-methyltransferase	99.48
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.47
COG4123	248	Predicted O-methyltransferase [General function pr	99.47
COG2890	280	HemK Methylase of polypeptide chain release factor	99.46
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.46
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.46
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.45
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.44
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.44
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.44
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.44
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.43
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.43
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.43
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.42
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.42
PRK11207	197	tellurite resistance protein TehB; Provisional	99.41
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.4
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.39
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.39
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.39
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.39
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.39
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.38
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.38
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.38
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.37
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.37
PLN02476	278	O-methyltransferase	99.37
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.37
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.37
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.35
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	99.34
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.34
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.34
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.33
PRK04266	226	fibrillarin; Provisional	99.33
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.33
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.33
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.33
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.33
PRK04457	262	spermidine synthase; Provisional	99.32
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.32
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.32
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.31
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.31
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.31
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.31
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.3
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.3
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.3
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.3
KOG2904|consensus	328		99.3
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.3
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.29
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.29
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.29
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.29
PRK12335	287	tellurite resistance protein TehB; Provisional	99.29
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.28
KOG1540|consensus	296		99.28
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.28
PRK08317	241	hypothetical protein; Provisional	99.28
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.28
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.28
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.27
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.27
KOG2187|consensus	534		99.27
PRK14968	188	putative methyltransferase; Provisional	99.27
KOG1271|consensus	227		99.27
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.26
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	99.26
PLN02336	475	phosphoethanolamine N-methyltransferase	99.26
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.26
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.26
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.26
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.25
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.25
PLN02672	1082	methionine S-methyltransferase	99.25
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.24
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	99.24
PRK05785	226	hypothetical protein; Provisional	99.24
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.23
PLN03075	296	nicotianamine synthase; Provisional	99.22
PRK14967	223	putative methyltransferase; Provisional	99.22
COG4122	219	Predicted O-methyltransferase [General function pr	99.22
KOG1270|consensus	282		99.22
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	99.22
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.19
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.19
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.19
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.18
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.18
PRK06202	232	hypothetical protein; Provisional	99.18
PTZ00146	293	fibrillarin; Provisional	99.18
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.18
PRK06922	677	hypothetical protein; Provisional	99.18
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.17
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.17
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.16
PRK00811	283	spermidine synthase; Provisional	99.15
KOG1661|consensus	237		99.15
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.15
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.14
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.14
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.13
KOG1541|consensus	270		99.13
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.12
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.12
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.12
COG2520	341	Predicted methyltransferase [General function pred	99.11
PHA03411	279	putative methyltransferase; Provisional	99.08
PLN02490	340	MPBQ/MSBQ methyltransferase	99.08
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	99.08
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.08
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.07
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.06
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.06
KOG1499|consensus	346		99.03
PRK01581	374	speE spermidine synthase; Validated	99.03
KOG3191|consensus	209		99.02
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.02
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.02
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.01
PHA03412	241	putative methyltransferase; Provisional	99.0
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.99
KOG2915|consensus	314		98.98
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.98
TIGR00438	188	rrmJ cell division protein FtsJ.	98.97
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.96
PLN02366	308	spermidine synthase	98.96
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.96
PRK03612	521	spermidine synthase; Provisional	98.95
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.94
KOG3420|consensus	185		98.94
PLN02336	475	phosphoethanolamine N-methyltransferase	98.93
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.93
KOG0820|consensus	315		98.93
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.92
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.92
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.91
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.91
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.89
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.85
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.85
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.85
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.84
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.83
PF13679	141	Methyltransf_32: Methyltransferase domain	98.81
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.8
KOG2730|consensus	263		98.79
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.79
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.79
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.78
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.78
KOG1500|consensus	517		98.77
PRK04148	134	hypothetical protein; Provisional	98.73
PLN02823	336	spermine synthase	98.73
KOG1663|consensus	237		98.72
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.69
KOG3010|consensus	261		98.68
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.68
KOG2899|consensus	288		98.68
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.67
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.66
KOG1975|consensus	389		98.66
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.64
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.64
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.63
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.62
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.6
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.6
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.58
COG4076	252	Predicted RNA methylase [General function predicti	98.57
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	98.56
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.55
KOG4300|consensus	252		98.51
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	98.49
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.48
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.47
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.44
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	98.44
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.43
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.43
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.42
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.4
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.38
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.34
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.3
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.29
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.28
KOG3115|consensus	249		98.26
KOG2361|consensus	264		98.24
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.22
PRK10742	250	putative methyltransferase; Provisional	98.21
PRK11524	284	putative methyltransferase; Provisional	98.19
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.18
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.1
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	98.09
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	98.0
PRK00536	262	speE spermidine synthase; Provisional	97.98
PRK13699	227	putative methylase; Provisional	97.95
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.93
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.93
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.92
COG3897	218	Predicted methyltransferase [General function pred	97.92
KOG1501|consensus	636		97.9
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.87
KOG1227|consensus	351		97.87
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.86
KOG2078|consensus	495		97.84
PHA01634	156	hypothetical protein	97.81
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.8
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.76
KOG1122|consensus	460		97.75
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.74
COG2521	287	Predicted archaeal methyltransferase [General func	97.69
KOG4589|consensus	232		97.59
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.54
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.51
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.49
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.48
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.41
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.33
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.31
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.27
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	97.26
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.19
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.17
KOG4058|consensus	199		97.02
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.81
KOG2651|consensus	476		96.79
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	96.78
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	96.75
KOG3987|consensus	288		96.74
COG0286	489	HsdM Type I restriction-modification system methyl	96.71
KOG1596|consensus	317		96.68
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.61
KOG2940|consensus	325		96.54
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	96.5
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	96.46
KOG3178|consensus	342		96.38
COG0863	302	DNA modification methylase [DNA replication, recom	96.36
COG1565	370	Uncharacterized conserved protein [Function unknow	96.22
KOG2360|consensus	413		96.16
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.14
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	96.07
KOG2352|consensus	482		96.02
PLN02232	160	ubiquinone biosynthesis methyltransferase	96.01
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.01
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	95.94
KOG2671|consensus	421		95.82
KOG1098|consensus	780		95.81
KOG2920|consensus	282		95.79
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	95.76
KOG0024|consensus	354		95.74
KOG2198|consensus	375		95.74
PRK10458	467	DNA cytosine methylase; Provisional	95.55
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	95.55
KOG2793|consensus	248		95.37
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.12
KOG2912|consensus	419		95.02
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	94.9
KOG1253|consensus	525		94.83
KOG1709|consensus	271		94.81
KOG2782|consensus	303		94.79
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	94.68
KOG0821|consensus	326		94.56
COG4798	238	Predicted methyltransferase [General function pred	94.49
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	94.46
KOG1269|consensus	364		94.32
KOG0822|consensus	649		94.3
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	94.27
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.04
PTZ00357	1072	methyltransferase; Provisional	94.04
KOG3045|consensus	325		94.02
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	93.93
COG1568	354	Predicted methyltransferases [General function pre	93.89
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	93.64
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	93.55
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	93.5
PRK08339	263	short chain dehydrogenase; Provisional	93.42
KOG1331|consensus	293		93.41
KOG0022|consensus	375		93.31
KOG3201|consensus	201		93.28
PRK07904	253	short chain dehydrogenase; Provisional	92.92
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	92.88
PRK06940	275	short chain dehydrogenase; Provisional	92.84
COG4301	321	Uncharacterized conserved protein [Function unknow	92.46
PRK09496	453	trkA potassium transporter peripheral membrane com	92.44
PRK06172	253	short chain dehydrogenase; Provisional	92.41
KOG2352|consensus	482		92.27
PRK07063	260	short chain dehydrogenase; Provisional	92.2
PRK07102	243	short chain dehydrogenase; Provisional	92.19
PLN02668	386	indole-3-acetate carboxyl methyltransferase	92.06
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	92.04
PF05575	286	V_cholerae_RfbT: Vibrio cholerae RfbT protein; Int	92.03
PRK05599	246	hypothetical protein; Provisional	91.97
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	91.97
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	91.94
PRK05867	253	short chain dehydrogenase; Provisional	91.67
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	91.61
TIGR00497	501	hsdM type I restriction system adenine methylase (	91.56
PRK07062	265	short chain dehydrogenase; Provisional	91.53
PRK09242	257	tropinone reductase; Provisional	91.36
PRK06125	259	short chain dehydrogenase; Provisional	91.33
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	91.31
PRK06124	256	gluconate 5-dehydrogenase; Provisional	91.2
PRK07677	252	short chain dehydrogenase; Provisional	91.2
KOG2811|consensus	420		90.64
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	90.52
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	90.38
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	90.38
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	90.16
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	90.04
COG1255	129	Uncharacterized protein conserved in archaea [Func	90.04
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	90.03
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	90.0
PRK03562	621	glutathione-regulated potassium-efflux system prot	89.69
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	89.58
KOG1201|consensus	300		89.56
PRK03659	601	glutathione-regulated potassium-efflux system prot	89.42
PRK10669	558	putative cation:proton antiport protein; Provision	89.33
PRK07890	258	short chain dehydrogenase; Provisional	89.3
PLN02427	386	UDP-apiose/xylose synthase	89.29
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	89.28
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.14
PRK07097	265	gluconate 5-dehydrogenase; Provisional	88.99
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	88.98
KOG1099|consensus	294		88.96
PRK07035	252	short chain dehydrogenase; Provisional	88.93
PRK05854	313	short chain dehydrogenase; Provisional	88.91
PRK06194	287	hypothetical protein; Provisional	88.78
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	88.76
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	88.73
PRK07454	241	short chain dehydrogenase; Provisional	88.73
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	88.66
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	88.65
PRK09186	256	flagellin modification protein A; Provisional	88.62
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	88.52
PLN02780	320	ketoreductase/ oxidoreductase	88.49
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	88.46
PLN02740	381	Alcohol dehydrogenase-like	88.43
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	88.37
PRK06914	280	short chain dehydrogenase; Provisional	88.36
PRK05866	293	short chain dehydrogenase; Provisional	88.24
KOG3924|consensus	419		88.07
PRK06139	330	short chain dehydrogenase; Provisional	87.83
PRK07523	255	gluconate 5-dehydrogenase; Provisional	87.82
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	87.77
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	87.69
PRK07109	334	short chain dehydrogenase; Provisional	87.62
PRK05876	275	short chain dehydrogenase; Provisional	87.59
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	87.54
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	87.38
PLN02896	353	cinnamyl-alcohol dehydrogenase	87.38
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	87.29
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.28
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	86.9
PLN02540	565	methylenetetrahydrofolate reductase	86.88
PRK08703	239	short chain dehydrogenase; Provisional	86.66
PRK08251	248	short chain dehydrogenase; Provisional	86.58
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	86.46
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	86.37
PRK07478	254	short chain dehydrogenase; Provisional	86.23
PRK07814	263	short chain dehydrogenase; Provisional	86.19
PRK07831	262	short chain dehydrogenase; Provisional	86.17
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	86.15
KOG2798|consensus	369		85.96
PRK06949	258	short chain dehydrogenase; Provisional	85.77
PRK06181	263	short chain dehydrogenase; Provisional	85.65
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	85.65
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	85.51
PRK06197	306	short chain dehydrogenase; Provisional	85.46
PRK08213	259	gluconate 5-dehydrogenase; Provisional	85.35
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	85.33
KOG1562|consensus	337		85.31
PRK08277	278	D-mannonate oxidoreductase; Provisional	85.26
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	85.22
PRK08643	256	acetoin reductase; Validated	84.99
PRK08340	259	glucose-1-dehydrogenase; Provisional	84.99
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	84.91
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	84.87
PRK08862	227	short chain dehydrogenase; Provisional	84.81
COG0338	274	Dam Site-specific DNA methylase [DNA replication,	84.79
PRK08589	272	short chain dehydrogenase; Validated	84.78
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	84.66
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	84.56
PRK07576	264	short chain dehydrogenase; Provisional	84.19
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	84.1
PRK09072	263	short chain dehydrogenase; Provisional	83.92
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	83.75
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	83.62
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	83.45
COG2933	358	Predicted SAM-dependent methyltransferase [General	83.31
KOG1209|consensus	289		83.15
PRK13978	228	ribose-5-phosphate isomerase A; Provisional	82.96
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	82.93
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	82.77
PRK12939	250	short chain dehydrogenase; Provisional	82.7
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	82.63
TIGR00571	266	dam DNA adenine methylase (dam). All proteins in t	82.49
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	82.49
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	82.34
PRK05650	270	short chain dehydrogenase; Provisional	82.01
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	81.58
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	81.54
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	81.51
PRK05875	276	short chain dehydrogenase; Provisional	81.47
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	81.26
PRK08085	254	gluconate 5-dehydrogenase; Provisional	81.06
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	80.8
PF07101	124	DUF1363: Protein of unknown function (DUF1363); In	80.74
PRK08303	305	short chain dehydrogenase; Provisional	80.66
PLN02384	264	ribose-5-phosphate isomerase	80.63
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	80.58
PLN02827	378	Alcohol dehydrogenase-like	80.06
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	80.02

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.69  E-value=5.5e-16  Score=83.50  Aligned_cols=61  Identities=28%  Similarity=0.544  Sum_probs=55.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG   81 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (88)
                      |+.+|||+|||+|..+..+++.. +..+++++|+|+.+++.++++....+    ...+++++++|+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~i~~~~~d~   61 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEG----LSDRITFVQGDA   61 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTT----TTTTEEEEESCC
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEECcc
Confidence            57899999999999999999965 68899999999999999999996655    578999999998

...

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.68  E-value=7.9e-16  Score=87.17  Aligned_cols=66  Identities=20%  Similarity=0.324  Sum_probs=58.1

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      +++.+|||+|||+|.++..+++...++.+++|+|+++.+++.|+++++..+     ..+++|.++|+++ ++
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-----~~ni~~~~~d~~~-l~   67 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-----LDNIEFIQGDIED-LP   67 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-----STTEEEEESBTTC-GC
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-----ccccceEEeehhc-cc
Confidence            467899999999999999999765578899999999999999999999887     5699999999988 54

...

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.64  E-value=5.1e-15  Score=88.14  Aligned_cols=76  Identities=38%  Similarity=0.593  Sum_probs=64.4

Q ss_pred             HHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023           3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      ++.+++.+.  +.++.+|||+|||+|..+..+++..++.++|+++|+++++++.|+++++.++     ..+++++.+|+.
T Consensus        66 ~~~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-----~~~v~~~~~d~~  138 (215)
T TIGR00080        66 VAMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-----LDNVIVIVGDGT  138 (215)
T ss_pred             HHHHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-----CCCeEEEECCcc
Confidence            345555554  5678899999999999999999987666789999999999999999999887     578999999987


Q ss_pred             ccc
Q psy8023          83 IQY   85 (88)
Q Consensus        83 ~~~   85 (88)
                      +.+
T Consensus       139 ~~~  141 (215)
T TIGR00080       139 QGW  141 (215)
T ss_pred             cCC
Confidence            654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.63  E-value=7e-15  Score=87.05  Aligned_cols=76  Identities=30%  Similarity=0.474  Sum_probs=62.2

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .+++.+.  ..++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++..++    ...+++++.+|+.++
T Consensus        63 ~~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~----~~~~v~~~~~d~~~~  136 (205)
T PRK13944         63 MMCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG----YWGVVEVYHGDGKRG  136 (205)
T ss_pred             HHHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCcEEEEECCcccC
Confidence            3444443  4567899999999999999999987656799999999999999999998876    445789999998875


Q ss_pred             cc
Q psy8023          85 YL   86 (88)
Q Consensus        85 ~~   86 (88)
                      ++
T Consensus       137 ~~  138 (205)
T PRK13944        137 LE  138 (205)
T ss_pred             Cc
Confidence            53

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.62  E-value=8.4e-15  Score=87.14  Aligned_cols=76  Identities=39%  Similarity=0.623  Sum_probs=64.1

Q ss_pred             HHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023           3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      +..+++.+.  +.++.+|||+|||+|+.+..+++..++.++|+++|+++++++.++++++..+     ..+++++.+|+.
T Consensus        65 ~~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-----~~~v~~~~gd~~  137 (212)
T PRK13942         65 VAIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-----YDNVEVIVGDGT  137 (212)
T ss_pred             HHHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCeEEEECCcc
Confidence            344555554  5688899999999999999999987667899999999999999999999877     568999999987


Q ss_pred             ccc
Q psy8023          83 IQY   85 (88)
Q Consensus        83 ~~~   85 (88)
                      ..+
T Consensus       138 ~~~  140 (212)
T PRK13942        138 LGY  140 (212)
T ss_pred             cCC
Confidence            644

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.61  E-value=7.9e-15  Score=87.06  Aligned_cols=78  Identities=42%  Similarity=0.602  Sum_probs=67.1

Q ss_pred             cHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023           2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG   81 (88)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (88)
                      +++++++.+.  +.++.+|||+|||+|+.+..+++..++.++|+++|.++...+.|++++...+     ..++.++.+|.
T Consensus        60 ~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~-----~~nv~~~~gdg  132 (209)
T PF01135_consen   60 MVARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG-----IDNVEVVVGDG  132 (209)
T ss_dssp             HHHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT-----THSEEEEES-G
T ss_pred             HHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc-----cCceeEEEcch
Confidence            4677888887  8899999999999999999999998888899999999999999999999887     77999999999


Q ss_pred             ccccc
Q psy8023          82 DIQYL   86 (88)
Q Consensus        82 ~~~~~   86 (88)
                      ..+++
T Consensus       133 ~~g~~  137 (209)
T PF01135_consen  133 SEGWP  137 (209)
T ss_dssp             GGTTG
T ss_pred             hhccc
Confidence            88764

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.61  E-value=6.1e-15  Score=88.83  Aligned_cols=65  Identities=31%  Similarity=0.565  Sum_probs=49.8

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||||..+..+++..++.++|+++|+|+.|++.++++....+     ..+++++++|+++
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-----~~~i~~v~~da~~  109 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-----LQNIEFVQGDAED  109 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-BTTB
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-----CCCeeEEEcCHHH
Confidence            4577899999999999999999988778899999999999999999999876     5599999999876

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.60  E-value=1.2e-14  Score=87.55  Aligned_cols=63  Identities=29%  Similarity=0.519  Sum_probs=57.0

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||||..+..+++..+ .++|+++|+|+.|++.++++....+     ..+++|+.+|+++
T Consensus        50 ~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~-----~~~i~fv~~dAe~  112 (238)
T COG2226          50 KPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKG-----VQNVEFVVGDAEN  112 (238)
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccC-----ccceEEEEechhh
Confidence            3789999999999999999999985 8999999999999999999999866     4449999999875

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.58  E-value=4.3e-14  Score=85.74  Aligned_cols=70  Identities=17%  Similarity=0.256  Sum_probs=58.1

Q ss_pred             HhhcCCCCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          10 LKDNLKPGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        10 ~~~~~~~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +....+++.+|||+|||+|..+..+++.. .++.+++++|+|+.|++.|++++..++    ...+++++++|+.+
T Consensus        50 ~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~----~~~~v~~~~~d~~~  120 (247)
T PRK15451         50 AERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK----APTPVDVIEGDIRD  120 (247)
T ss_pred             HHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEeCChhh
Confidence            33345678899999999999999988853 367899999999999999999998766    44578999998764

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.57  E-value=2.8e-14  Score=83.54  Aligned_cols=65  Identities=23%  Similarity=0.263  Sum_probs=57.3

Q ss_pred             cCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++++.+|||+|||+|..++.++... +..+|+++|.++.+++.++++.+.++     ..+++++.+|+.+
T Consensus        42 ~l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~-----l~~i~~~~~d~~~  106 (187)
T PRK00107         42 YLPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELG-----LKNVTVVHGRAEE  106 (187)
T ss_pred             hcCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcC-----CCCEEEEeccHhh
Confidence            35568899999999999999999875 67899999999999999999999887     4559999999876

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.55  E-value=8.6e-14  Score=83.36  Aligned_cols=65  Identities=18%  Similarity=0.351  Sum_probs=56.7

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||+|..+..+++..++..+++++|+++.+++.++++....+     ..+++++++|+.+
T Consensus        43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~  107 (231)
T TIGR02752        43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-----LHNVELVHGNAME  107 (231)
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-----CCceEEEEechhc
Confidence            4567899999999999999999987677899999999999999999987765     4678898888765

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.55  E-value=1.5e-13  Score=79.26  Aligned_cols=73  Identities=26%  Similarity=0.382  Sum_probs=60.8

Q ss_pred             HHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023           6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus         6 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      +++.+...  ++.++||+|||+|.+++.+++.. +..+++++|+++.+++.+++++..++     ..+++++..|..+.+
T Consensus        23 L~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~-----~~~v~~~~~d~~~~~   94 (170)
T PF05175_consen   23 LLDNLPKH--KGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNG-----LENVEVVQSDLFEAL   94 (170)
T ss_dssp             HHHHHHHH--TTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTT-----CTTEEEEESSTTTTC
T ss_pred             HHHHHhhc--cCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcC-----ccccccccccccccc
Confidence            44445432  66799999999999999999985 67789999999999999999999988     344999999987765


Q ss_pred             c
Q psy8023          86 L   86 (88)
Q Consensus        86 ~   86 (88)
                      +
T Consensus        95 ~   95 (170)
T PF05175_consen   95 P   95 (170)
T ss_dssp             C
T ss_pred             c
Confidence            4

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=8.6e-14  Score=82.09  Aligned_cols=75  Identities=40%  Similarity=0.637  Sum_probs=68.0

Q ss_pred             cHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023           2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG   81 (88)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (88)
                      |++++++.+.  +.++.+|||+|||+|+.+..+++..+   +|+.+|..++..+.|++++...+     ..++.+.++|.
T Consensus        60 ~vA~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg-----~~nV~v~~gDG  129 (209)
T COG2518          60 MVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLG-----YENVTVRHGDG  129 (209)
T ss_pred             HHHHHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcC-----CCceEEEECCc
Confidence            5677888887  78899999999999999999999864   79999999999999999999988     77799999999


Q ss_pred             ccccc
Q psy8023          82 DIQYL   86 (88)
Q Consensus        82 ~~~~~   86 (88)
                      ..++|
T Consensus       130 ~~G~~  134 (209)
T COG2518         130 SKGWP  134 (209)
T ss_pred             ccCCC
Confidence            99875

>TIGR00740 methyltransferase, putative

Probab=99.53  E-value=1.9e-13  Score=82.40  Aligned_cols=66  Identities=15%  Similarity=0.197  Sum_probs=55.9

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|..+..+++.+. ++.+++++|+|+.+++.|++++...+    ...+++++++|+.+
T Consensus        51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~----~~~~v~~~~~d~~~  117 (239)
T TIGR00740        51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH----SEIPVEILCNDIRH  117 (239)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEECChhh
Confidence            45778999999999999999998753 57899999999999999999987755    34578899988765

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.53  E-value=2.3e-13  Score=74.19  Aligned_cols=64  Identities=36%  Similarity=0.477  Sum_probs=54.7

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|+|+|||+|..+..+++.. +..+++++|+++.+++.++++++.++     ..+++++.+|+..
T Consensus        17 ~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~   80 (124)
T TIGR02469        17 LRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFG-----VSNIVIVEGDAPE   80 (124)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhC-----CCceEEEeccccc
Confidence            4567799999999999999999986 55899999999999999999998876     4568888887653

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.53  E-value=2e-13  Score=79.69  Aligned_cols=64  Identities=27%  Similarity=0.334  Sum_probs=55.4

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|.+++.+++.. ++.+++++|+++.+++.+++++..++     ..+++++.+|+..
T Consensus        29 ~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~-----~~~i~~~~~d~~~   92 (187)
T PRK08287         29 LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFG-----CGNIDIIPGEAPI   92 (187)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhC-----CCCeEEEecCchh
Confidence            4577899999999999999999885 67899999999999999999998776     3568888888653

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.52  E-value=9.1e-14  Score=81.00  Aligned_cols=62  Identities=24%  Similarity=0.227  Sum_probs=54.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++.+|||+|||+|..++.++... +..+|+++|.++.+++.++++.++++     ..+++++.+|+.+
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~-----~~~i~~i~~d~~~  103 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELG-----LNNVEIVNGRAED  103 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhC-----CCCeEEEecchhh
Confidence            47899999999999999998764 67899999999999999999998876     4579999999876

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.52  E-value=2.8e-13  Score=78.57  Aligned_cols=66  Identities=30%  Similarity=0.462  Sum_probs=60.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      +.++.+++|+|||+|.+++.++ ...|.++++++|-++++++..++|..+.+     .++++++.+|+-+-+
T Consensus        32 ~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-----~~n~~vv~g~Ap~~L   97 (187)
T COG2242          32 PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFG-----VDNLEVVEGDAPEAL   97 (187)
T ss_pred             CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhC-----CCcEEEEeccchHhh
Confidence            6788999999999999999999 44689999999999999999999999988     889999999987643

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.52  E-value=2e-13  Score=80.29  Aligned_cols=64  Identities=27%  Similarity=0.338  Sum_probs=55.8

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|.++..++... +..+++++|+++.+++.++++++.++     ..+++++.+|+.+
T Consensus        38 ~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~-----~~~v~~~~~d~~~  101 (196)
T PRK07402         38 LEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFG-----VKNVEVIEGSAPE  101 (196)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC-----CCCeEEEECchHH
Confidence            4577899999999999999998764 66899999999999999999998876     4678999998865

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.51  E-value=2.9e-13  Score=79.76  Aligned_cols=67  Identities=30%  Similarity=0.358  Sum_probs=58.2

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +.++.+|||+|||+|.+++.++...++..+++++|+++.+++.++++++.++    ...+++++.+|..+.
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g----~~~~v~~~~~d~~~~  104 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG----VLNNIVLIKGEAPEI  104 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCCeEEEEechhhh
Confidence            5678899999999999999999877667799999999999999999998876    446788888888653

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.50  E-value=2.5e-13  Score=84.20  Aligned_cols=61  Identities=34%  Similarity=0.529  Sum_probs=54.3

Q ss_pred             HHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023           3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      ++.|++.+..+..++++|||+|||+|.+++..++..  ..+|+|+|++|.+++.|++|+..|+
T Consensus       148 T~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klG--A~~v~a~DiDp~Av~~a~~N~~~N~  208 (295)
T PF06325_consen  148 TRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLG--AKKVVAIDIDPLAVEAARENAELNG  208 (295)
T ss_dssp             HHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTT--BSEEEEEESSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHHcC
Confidence            567889998888899999999999999999988874  3489999999999999999999988

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.49  E-value=4.3e-13  Score=84.07  Aligned_cols=66  Identities=29%  Similarity=0.471  Sum_probs=57.6

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +.++.+|||+|||+|.++..+++..+..++|+++|+++++++.|+++++.++     ..++.++.+|+.+.
T Consensus        78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-----~~nV~~i~gD~~~~  143 (322)
T PRK13943         78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-----IENVIFVCGDGYYG  143 (322)
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEeCChhhc
Confidence            5677899999999999999999987545689999999999999999999877     56789999997654

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.49  E-value=4e-13  Score=82.52  Aligned_cols=64  Identities=30%  Similarity=0.317  Sum_probs=58.5

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.+|+++||+|||.|.+++..++.+  +.+|+|+++|+++.+.++++++..+    ...+++++..|-.+
T Consensus        70 L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~g----l~~~v~v~l~d~rd  133 (283)
T COG2230          70 LKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARG----LEDNVEVRLQDYRD  133 (283)
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcC----CCcccEEEeccccc
Confidence            6899999999999999999999997  6799999999999999999999988    55689998888665

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.49  E-value=6.2e-13  Score=81.31  Aligned_cols=68  Identities=26%  Similarity=0.322  Sum_probs=54.2

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||+|.++..+++..++.++|+|+|+|++|++.|+++......  ....+++++++|+.+
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~--~~~~~i~~~~~d~~~  138 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK--SCYKNIEWIEGDATD  138 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh--ccCCCeEEEEccccc
Confidence            45778999999999999999998876667999999999999999887642110  024578899998764

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.48  E-value=4.4e-13  Score=82.83  Aligned_cols=65  Identities=23%  Similarity=0.339  Sum_probs=56.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ++.+|||+|||+|.+++.+++.. ++.+++++|+|+.+++.|++|+..++    ...+++++.+|+.+.+
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~----~~~~i~~~~~D~~~~~  185 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHG----LEDRVTLIQSDLFAAL  185 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEECchhhcc
Confidence            45689999999999999999986 67799999999999999999999887    4467999999986544

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.48  E-value=3.2e-13  Score=79.83  Aligned_cols=62  Identities=15%  Similarity=0.141  Sum_probs=54.8

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      .++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++...++     ..+++++++|+.
T Consensus        39 ~~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~-----~~~v~~~~~d~~  100 (202)
T PRK00121         39 NDAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEG-----LTNLRLLCGDAV  100 (202)
T ss_pred             CCCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcC-----CCCEEEEecCHH
Confidence            356799999999999999999886 66789999999999999999998776     467999999983

>TIGR03438 probable methyltransferase

Probab=99.48  E-value=5.2e-13  Score=83.09  Aligned_cols=77  Identities=13%  Similarity=0.236  Sum_probs=60.8

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .....+...++++.+|||+|||+|..+..+++...+..+++++|+|++|++.+++++....    +..++.++++|..+.
T Consensus        52 ~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~----p~~~v~~i~gD~~~~  127 (301)
T TIGR03438        52 RHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY----PQLEVHGICADFTQP  127 (301)
T ss_pred             HHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC----CCceEEEEEEcccch
Confidence            3444555556677899999999999999999987435789999999999999999887533    245678889998764


Q ss_pred             c
Q psy8023          85 Y   85 (88)
Q Consensus        85 ~   85 (88)
                      +
T Consensus       128 ~  128 (301)
T TIGR03438       128 L  128 (301)
T ss_pred             h
Confidence            3

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PLN02244 tocopherol O-methyltransferase

Probab=99.48  E-value=6.2e-13  Score=83.95  Aligned_cols=63  Identities=17%  Similarity=0.153  Sum_probs=55.0

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|.++..+++.+  +.+|+|+|+|+.+++.++++....+    ...+++++.+|+.+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g----~~~~v~~~~~D~~~  179 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQG----LSDKVSFQVADALN  179 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEEcCccc
Confidence            456799999999999999999876  5689999999999999999988766    45679999999865

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.47  E-value=7.2e-13  Score=85.17  Aligned_cols=73  Identities=22%  Similarity=0.229  Sum_probs=60.2

Q ss_pred             HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.+++.+....+++.+|||+|||+|.+++.++... +..+++++|+|+.+++.+++|.+.++      .+++++.+|..+
T Consensus       239 E~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g------~rV~fi~gDl~e  311 (423)
T PRK14966        239 EHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLG------ARVEFAHGSWFD  311 (423)
T ss_pred             HHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC------CcEEEEEcchhc
Confidence            44555555555666799999999999999998875 67899999999999999999998765      278899998754

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.47  E-value=2.7e-13  Score=81.98  Aligned_cols=67  Identities=16%  Similarity=0.279  Sum_probs=60.2

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      .+...+|||+|||+|..++.++++. ++.+++++|+++++.+.|+++++.++    +.++++++++|+.+..
T Consensus        42 ~~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~----l~~ri~v~~~Di~~~~  108 (248)
T COG4123          42 VPKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNP----LEERIQVIEADIKEFL  108 (248)
T ss_pred             cccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCc----chhceeEehhhHHHhh
Confidence            3447799999999999999999996 45899999999999999999999988    7899999999988643

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=5.9e-13  Score=82.13  Aligned_cols=61  Identities=23%  Similarity=0.384  Sum_probs=53.3

Q ss_pred             eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      +|+|+|||+|.+++.++... +..+|+++|+|+.+++.|++|...++    . .++.++.+|..+.+
T Consensus       113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~----l-~~~~~~~~dlf~~~  173 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNG----L-VRVLVVQSDLFEPL  173 (280)
T ss_pred             cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcC----C-ccEEEEeeeccccc
Confidence            79999999999999999996 67899999999999999999999988    3 66667776766544

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.46  E-value=5.8e-13  Score=70.79  Aligned_cols=58  Identities=24%  Similarity=0.450  Sum_probs=47.2

Q ss_pred             EEEecCCCChHHHHHHHHh--CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          20 VLDIGSGSGYLTACFADLV--GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        20 vlD~g~G~G~~~~~l~~~~--~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      |||+|||+|..+..+.+.+  ++..+++++|+|+++++.++++....+      .+++++++|+.+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~------~~~~~~~~D~~~   60 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG------PKVRFVQADARD   60 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT------TTSEEEESCTTC
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC------CceEEEECCHhH
Confidence            7999999999999999986  334799999999999999999998755      288999999876

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=4.5e-13  Score=82.83  Aligned_cols=63  Identities=33%  Similarity=0.464  Sum_probs=56.7

Q ss_pred             HHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCC
Q psy8023           3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPE   67 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~   67 (88)
                      ++.|++++..+..++.++||+|||+|.+++..++..  -.+++|+|++|.+++.|++|++.|+..
T Consensus       149 T~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v~  211 (300)
T COG2264         149 TSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGVE  211 (300)
T ss_pred             HHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCCc
Confidence            567899999988999999999999999999998874  347999999999999999999998833

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.45  E-value=1e-12  Score=79.32  Aligned_cols=75  Identities=19%  Similarity=0.213  Sum_probs=62.9

Q ss_pred             HHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023           6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus         6 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ++..+.. ..++++|||+|||+|+.++.++...++.++++++|+++++++.|+++++.++    ...+++++.+|+.+.+
T Consensus        59 ~L~~l~~-~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g----l~~~i~~~~gda~~~L  133 (234)
T PLN02781         59 FLSMLVK-IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG----VDHKINFIQSDALSAL  133 (234)
T ss_pred             HHHHHHH-HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEccHHHHH
Confidence            3444442 3467799999999999999999987678899999999999999999999988    5678999999987653

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.44  E-value=9e-13  Score=81.07  Aligned_cols=64  Identities=30%  Similarity=0.381  Sum_probs=52.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.+|.+|||+|||.|.++..+++.+  +++|+++.+|++..+.+++++++.+    ..+++++...|..+
T Consensus        60 l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~g----l~~~v~v~~~D~~~  123 (273)
T PF02353_consen   60 LKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAG----LEDRVEVRLQDYRD  123 (273)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCST----SSSTEEEEES-GGG
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEEeeccc
Confidence            6789999999999999999999997  6799999999999999999999887    67789999998765

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.44  E-value=1.6e-12  Score=80.33  Aligned_cols=63  Identities=25%  Similarity=0.349  Sum_probs=55.4

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      .+|||+|||+|.+++.++... ++.+++++|+|+.+++.|++|...++    ...+++++.+|..+.+
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~----~~~~v~~~~~d~~~~~  178 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQ----LEHRVEFIQSNLFEPL  178 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEECchhccC
Confidence            689999999999999999986 66799999999999999999999877    3446999999987654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.44  E-value=1.2e-12  Score=79.75  Aligned_cols=62  Identities=19%  Similarity=0.208  Sum_probs=53.4

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|.++..+++.   +.+|+++|+|+++++.|+++....+    ...+++++++|+.+
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g----~~~~v~~~~~d~~~  104 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKG----VSDNMQFIHCAAQD  104 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcC----CccceEEEEcCHHH
Confidence            45679999999999999999886   3589999999999999999998776    45678999888765

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.44  E-value=6.8e-13  Score=78.00  Aligned_cols=63  Identities=13%  Similarity=0.187  Sum_probs=56.1

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+..++||+|||+|.++..+++.. |+.+++|+|+++.+++.|+++....+     ..+++++++|+.+
T Consensus        15 ~~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~-----l~ni~~i~~d~~~   77 (194)
T TIGR00091        15 NKAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLG-----LKNLHVLCGDANE   77 (194)
T ss_pred             CCCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhC-----CCCEEEEccCHHH
Confidence            356799999999999999999986 77899999999999999999998776     5689999999865

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.43  E-value=2e-12  Score=77.10  Aligned_cols=62  Identities=24%  Similarity=0.294  Sum_probs=52.1

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|.++..++..   ..+++|+|+++++++.++++....+    ...++++.++|+.+
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~----~~~~i~~~~~d~~~  115 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRD----VAGNVEFEVNDLLS  115 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEECChhh
Confidence            45789999999999999999875   3489999999999999999988765    33578888888654

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.43  E-value=1.9e-12  Score=82.63  Aligned_cols=66  Identities=18%  Similarity=0.263  Sum_probs=54.4

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      +.+|||+|||+|.+++.+++.. |..+|+++|+|+.+++.+++|++.++..  ...++++..+|..+.+
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~--~~~~v~~~~~D~l~~~  294 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNALSGV  294 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcc--cCceEEEEEccccccC
Confidence            4589999999999999999986 7789999999999999999999877611  0236788888876543

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.43  E-value=1.3e-12  Score=84.94  Aligned_cols=63  Identities=22%  Similarity=0.238  Sum_probs=55.2

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ..++.+|||+|||+|.+++.+++..   .+++++|+|+.+++.|++|...++     ..+++++.+|+.+.
T Consensus       295 ~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~-----~~~v~~~~~d~~~~  357 (443)
T PRK13168        295 PQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNG-----LDNVTFYHANLEED  357 (443)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEEeChHHh
Confidence            3567899999999999999999874   479999999999999999999877     56799999998653

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.42  E-value=1.3e-12  Score=81.50  Aligned_cols=63  Identities=22%  Similarity=0.338  Sum_probs=55.8

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      .+|||+|||+|.+++.++... +..+++++|+|+.+++.|++|++.++    ...+++++++|+.+.+
T Consensus       135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~----l~~~i~~~~~D~~~~l  197 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHG----LEDRVTLIESDLFAAL  197 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC----CCCcEEEEECchhhhC
Confidence            689999999999999999986 67899999999999999999999877    4467999999986644

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.42  E-value=3.4e-12  Score=75.81  Aligned_cols=64  Identities=36%  Similarity=0.500  Sum_probs=54.6

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ..++.+|||+|||+|..+..+++..   .+++++|+++.+++.+++++++.+     ..++++..+|..+.+
T Consensus        76 ~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~  139 (212)
T PRK00312         76 LKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLG-----LHNVSVRHGDGWKGW  139 (212)
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCC-----CCceEEEECCcccCC
Confidence            4677899999999999998877764   279999999999999999998876     556899999876654

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.41  E-value=2.6e-12  Score=75.72  Aligned_cols=68  Identities=22%  Similarity=0.162  Sum_probs=53.8

Q ss_pred             HHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         6 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++.+.  ..++.+|||+|||+|..+..+++.   +.+|+++|+|+.+++.++++....+     ..++++..+|+.+
T Consensus        22 l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~-----~~~v~~~~~d~~~   89 (197)
T PRK11207         22 VLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAEN-----LDNLHTAVVDLNN   89 (197)
T ss_pred             HHHhcc--cCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcC-----CCcceEEecChhh
Confidence            444443  345679999999999999999985   3589999999999999999988766     4557777777653

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.40  E-value=2e-12  Score=76.67  Aligned_cols=76  Identities=24%  Similarity=0.401  Sum_probs=62.9

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .++..+.. ....++|||+||++|+.++.+++..+++++++.+|.+++..+.|++++++.+    ..++++++.+|+.+.
T Consensus        35 ~lL~~l~~-~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag----~~~~I~~~~gda~~~  109 (205)
T PF01596_consen   35 QLLQMLVR-LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG----LDDRIEVIEGDALEV  109 (205)
T ss_dssp             HHHHHHHH-HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT----GGGGEEEEES-HHHH
T ss_pred             HHHHHHHH-hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC----CCCcEEEEEeccHhh
Confidence            34444443 2355799999999999999999998778999999999999999999999988    667999999999865


Q ss_pred             c
Q psy8023          85 Y   85 (88)
Q Consensus        85 ~   85 (88)
                      +
T Consensus       110 l  110 (205)
T PF01596_consen  110 L  110 (205)
T ss_dssp             H
T ss_pred             H
Confidence            4

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.39  E-value=2.5e-12  Score=69.68  Aligned_cols=62  Identities=26%  Similarity=0.374  Sum_probs=55.3

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      |.+|||+|||+|.++..+++..  ..+++++|+++.+++.+++++..++    ...+++++++|..+.
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~----~~~~~~~~~~D~~~~   62 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNG----LDDRVEVIVGDARDL   62 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCT----TTTTEEEEESHHHHH
T ss_pred             CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHcc----CCceEEEEECchhhc
Confidence            4589999999999999999985  5789999999999999999999987    557899999998764

...

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.39  E-value=4.5e-12  Score=75.12  Aligned_cols=48  Identities=19%  Similarity=0.244  Sum_probs=42.1

Q ss_pred             cCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023          13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      ..+++.+|||+|||+|..+..+.+.. +..+++|+|+|+.+++.|+++.
T Consensus        40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~   87 (204)
T TIGR03587        40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL   87 (204)
T ss_pred             hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC
Confidence            35677799999999999999998875 5678999999999999998864

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.39  E-value=4.9e-12  Score=76.94  Aligned_cols=71  Identities=30%  Similarity=0.433  Sum_probs=54.4

Q ss_pred             HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCC
Q psy8023           4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGE   80 (88)
Q Consensus         4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d   80 (88)
                      ..+++.+.....++.+|||+|||+|..++.+++..  ..+++++|+++.+++.|+++...++    ...++.+..+|
T Consensus       107 ~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g--~~~v~giDis~~~l~~A~~n~~~~~----~~~~~~~~~~~  177 (250)
T PRK00517        107 RLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG--AKKVLAVDIDPQAVEAARENAELNG----VELNVYLPQGD  177 (250)
T ss_pred             HHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHcC----CCceEEEccCC
Confidence            45666666556788999999999999988776653  3369999999999999999998877    22444544443

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.39  E-value=7.5e-12  Score=75.62  Aligned_cols=64  Identities=25%  Similarity=0.268  Sum_probs=55.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      .+.+|||+|||+|.++..++... +..+++++|+++.+++.+++++..++     ..+++++.+|..+.+
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~  150 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLG-----LDNVTFLQSDWFEPL  150 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEECchhccC
Confidence            34589999999999999999986 66799999999999999999998876     457899999986643

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.39  E-value=4.4e-12  Score=83.63  Aligned_cols=63  Identities=14%  Similarity=0.182  Sum_probs=54.6

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +.+|||+|||+|.+++.++... ++.+++++|+|+.+++.|++|+..++    ...+++++.+|..+.
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~----l~~~v~~~~~D~~~~  201 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYE----VTDRIQIIHSNWFEN  201 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcC----Cccceeeeecchhhh
Confidence            4689999999999999999886 67899999999999999999998876    445788888887653

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.38  E-value=3.6e-12  Score=79.76  Aligned_cols=61  Identities=15%  Similarity=0.119  Sum_probs=54.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ++.+|||+|||+|.+++.+++.   ..+|+|+|+++.+++.|+++.+.++     ..+++++.+|+.+.
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~-----l~~v~~~~~D~~~~  233 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELG-----LTNVQFQALDSTQF  233 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEEcCHHHH
Confidence            4679999999999999999985   3589999999999999999999887     46899999998653

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.38  E-value=7.4e-12  Score=77.53  Aligned_cols=71  Identities=21%  Similarity=0.270  Sum_probs=55.1

Q ss_pred             HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCC
Q psy8023           4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGE   80 (88)
Q Consensus         4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d   80 (88)
                      +.+++.+.....++.+|||+|||+|.+++.+++..  ..+++++|+++.+++.++++...++    ...++.+..+|
T Consensus       147 ~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g--~~~V~avDid~~al~~a~~n~~~n~----~~~~~~~~~~~  217 (288)
T TIGR00406       147 SLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLG--AAKVVGIDIDPLAVESARKNAELNQ----VSDRLQVKLIY  217 (288)
T ss_pred             HHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHcC----CCcceEEEecc
Confidence            44566666556678999999999999998887652  4589999999999999999998876    33445555544

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=3.4e-12  Score=74.20  Aligned_cols=61  Identities=30%  Similarity=0.305  Sum_probs=53.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .++.|+|+|||||.+++..+-..  ..+|+++|+++++++.+++|..+.      ..+++|+++|+.+.
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lG--a~~V~~vdiD~~a~ei~r~N~~~l------~g~v~f~~~dv~~~  105 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLG--ASRVLAVDIDPEALEIARANAEEL------LGDVEFVVADVSDF  105 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcC--CcEEEEEecCHHHHHHHHHHHHhh------CCceEEEEcchhhc
Confidence            56789999999999999988774  358999999999999999999983      57899999998863

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.37  E-value=1.5e-11  Score=74.73  Aligned_cols=68  Identities=25%  Similarity=0.402  Sum_probs=56.7

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc-ccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD-IQY   85 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~-~~~   85 (88)
                      +.+|++|+|.|+|+|.++..+++..+|.++|+..|+.++..+.|+++++.++    ..+++++.+.|+. +++
T Consensus        38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g----l~~~v~~~~~Dv~~~g~  106 (247)
T PF08704_consen   38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG----LDDNVTVHHRDVCEEGF  106 (247)
T ss_dssp             --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT----CCTTEEEEES-GGCG--
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC----CCCCceeEecceecccc
Confidence            7899999999999999999999999999999999999999999999999988    6679999999985 444

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.37  E-value=6.1e-12  Score=77.12  Aligned_cols=65  Identities=37%  Similarity=0.561  Sum_probs=55.6

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||+|..+..++...++..+++++|+++.+++.++++....+     ..++++..+|+.+
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-----~~~v~~~~~d~~~  139 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-----YTNVEFRLGEIEA  139 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-----CCCEEEEEcchhh
Confidence            4678899999999999988888877667789999999999999999988766     4578888888754

>PLN02476 O-methyltransferase

Probab=99.37  E-value=8.6e-12  Score=76.79  Aligned_cols=76  Identities=16%  Similarity=0.225  Sum_probs=64.2

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +++..+.. ..+.++|||+||++|+.++.++...+++++++++|.+++..+.|++++++.+    ...+++++.+|+.+.
T Consensus       108 ~lL~~L~~-~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG----l~~~I~li~GdA~e~  182 (278)
T PLN02476        108 QLLAMLVQ-ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG----VSHKVNVKHGLAAES  182 (278)
T ss_pred             HHHHHHHH-hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEcCHHHH
Confidence            33444443 3457799999999999999999988778899999999999999999999988    567999999998775


Q ss_pred             c
Q psy8023          85 Y   85 (88)
Q Consensus        85 ~   85 (88)
                      +
T Consensus       183 L  183 (278)
T PLN02476        183 L  183 (278)
T ss_pred             H
Confidence            4

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.37  E-value=3.9e-12  Score=82.38  Aligned_cols=63  Identities=22%  Similarity=0.255  Sum_probs=55.2

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ..++.+|||+|||+|.+++.+++..   .+|+++|+++.+++.|++|+..++     ..+++++.+|+.+.
T Consensus       290 ~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~-----~~nv~~~~~d~~~~  352 (431)
T TIGR00479       290 LQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNG-----IANVEFLAGTLETV  352 (431)
T ss_pred             cCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhC-----CCceEEEeCCHHHH
Confidence            3466799999999999999999874   379999999999999999999887     57899999998653

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.37  E-value=7.7e-12  Score=72.05  Aligned_cols=68  Identities=25%  Similarity=0.374  Sum_probs=54.8

Q ss_pred             HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++.+.  ..++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++++..       ..+++++.+|+.+
T Consensus         3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~-------~~~v~ii~~D~~~   70 (169)
T smart00650        3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA-------ADNLTVIHGDALK   70 (169)
T ss_pred             HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc-------CCCEEEEECchhc
Confidence            34445444  456779999999999999999987   34799999999999999998754       2478888888875

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=3.7e-12  Score=82.49  Aligned_cols=73  Identities=29%  Similarity=0.335  Sum_probs=60.4

Q ss_pred             HHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023           3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      +....+++.  ..++.++||+.||.|.+++.+++..   .+|+|+|+++++++.|++|++.|+     ..|++|..+|++
T Consensus       282 ~~~a~~~~~--~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~-----i~N~~f~~~~ae  351 (432)
T COG2265         282 YETALEWLE--LAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANG-----IDNVEFIAGDAE  351 (432)
T ss_pred             HHHHHHHHh--hcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEeCCHH
Confidence            344444444  3466799999999999999999764   369999999999999999999998     777999999988


Q ss_pred             ccc
Q psy8023          83 IQY   85 (88)
Q Consensus        83 ~~~   85 (88)
                      +..
T Consensus       352 ~~~  354 (432)
T COG2265         352 EFT  354 (432)
T ss_pred             HHh
Confidence            754

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=99.34  E-value=1.3e-11  Score=76.57  Aligned_cols=74  Identities=16%  Similarity=0.265  Sum_probs=61.7

Q ss_pred             CcHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCC
Q psy8023           1 MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGE   80 (88)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d   80 (88)
                      +|..++++.+.  ..++..++|.+||.|+.+..+++..+++++|+|+|.++.+++.+++++.. .      .+++++++|
T Consensus         6 Vll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~------~ri~~i~~~   76 (296)
T PRK00050          6 VLLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-F------GRFTLVHGN   76 (296)
T ss_pred             ccHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-C------CcEEEEeCC
Confidence            46777888876  56778999999999999999999986678999999999999999988754 2      467788777


Q ss_pred             ccc
Q psy8023          81 GDI   83 (88)
Q Consensus        81 ~~~   83 (88)
                      ..+
T Consensus        77 f~~   79 (296)
T PRK00050         77 FSN   79 (296)
T ss_pred             HHH
Confidence            554

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.34  E-value=8e-12  Score=79.31  Aligned_cols=73  Identities=18%  Similarity=0.206  Sum_probs=58.1

Q ss_pred             HHHHHHhhcCC-CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           5 RALELLKDNLK-PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         5 ~~~~~~~~~~~-~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++..+..... .+.++||+|||+|.+++.+++.. .  +|+++|+++++++.+++|++.++     ..+++++.+|+.+
T Consensus       185 ~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~-~--~v~~vE~~~~av~~a~~n~~~~~-----~~~v~~~~~d~~~  256 (353)
T TIGR02143       185 KMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF-R--RVLATEIAKPSVNAAQYNIAANN-----IDNVQIIRMSAEE  256 (353)
T ss_pred             HHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC-C--EEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEEcCHHH
Confidence            34444444332 23479999999999999999875 3  79999999999999999999887     5679999999876


Q ss_pred             cc
Q psy8023          84 QY   85 (88)
Q Consensus        84 ~~   85 (88)
                      .+
T Consensus       257 ~~  258 (353)
T TIGR02143       257 FT  258 (353)
T ss_pred             HH
Confidence            43

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.34  E-value=1.4e-11  Score=75.06  Aligned_cols=59  Identities=20%  Similarity=0.250  Sum_probs=49.1

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +.+|||+|||+|.+++.+++.. +..+++++|+|+.+++.+++|+..++        ++++++|..+.
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~--------~~~~~~D~~~~  145 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAG--------GTVHEGDLYDA  145 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC--------CEEEEeechhh
Confidence            4589999999999999999875 56789999999999999999998765        25666666543

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.33  E-value=1.4e-11  Score=72.84  Aligned_cols=64  Identities=19%  Similarity=-0.011  Sum_probs=53.7

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      .++.+|||+|||+|.+++.++...  ..+|+++|+++.+++.+++|++.++     ..+++++++|+.+.+
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~-----~~~v~~~~~D~~~~l  115 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLK-----AGNARVVNTNALSFL  115 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhC-----CCcEEEEEchHHHHH
Confidence            356799999999999998765553  3589999999999999999999887     457999999987644

>PRK04266 fibrillarin; Provisional

Probab=99.33  E-value=2.5e-11  Score=72.95  Aligned_cols=62  Identities=27%  Similarity=0.373  Sum_probs=51.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||+|.++..+++..+ .++|+++|+++.+++.+.++.+..       .++.++.+|+.+
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~-------~nv~~i~~D~~~  131 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER-------KNIIPILADARK  131 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc-------CCcEEEECCCCC
Confidence            56888999999999999999999874 678999999999999887776542       356777777653

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.33  E-value=2.2e-11  Score=74.62  Aligned_cols=65  Identities=20%  Similarity=0.282  Sum_probs=57.7

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++++++     ..+++++.+|+..
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-----~~~v~~~~~D~~~  133 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG-----VLNVAVTNFDGRV  133 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-----CCcEEEecCCHHH
Confidence            4678899999999999999999987666799999999999999999999887     4678899888754

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.33  E-value=1.3e-11  Score=76.66  Aligned_cols=63  Identities=30%  Similarity=0.425  Sum_probs=54.5

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|.++..+++..   .+++++|+++.+++.+++++..++    ...+++++.+|+.+
T Consensus        34 ~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~----~~~~v~ii~~Dal~   96 (294)
T PTZ00338         34 IKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSP----LASKLEVIEGDALK   96 (294)
T ss_pred             CCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcC----CCCcEEEEECCHhh
Confidence            4577899999999999999998873   369999999999999999987655    35689999999875

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.33  E-value=1.3e-11  Score=75.13  Aligned_cols=46  Identities=20%  Similarity=0.342  Sum_probs=41.4

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      .++.+|||+|||+|.++..+++.. +..+++++|+|+.+++.++++.
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~   75 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL   75 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC
Confidence            567899999999999999999886 6789999999999999998864

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.33  E-value=1.9e-11  Score=71.99  Aligned_cols=56  Identities=21%  Similarity=0.183  Sum_probs=44.9

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      .+++.+.  ..++.+|||+|||+|..+..+++.   +.+|+++|+|+.+++.++++....+
T Consensus        21 ~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~   76 (195)
T TIGR00477        21 AVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKAREN   76 (195)
T ss_pred             HHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhC
Confidence            3444443  334579999999999999999985   4589999999999999998887655

Part of a tellurite-reducing operon tehA and tehB

>PRK04457 spermidine synthase; Provisional

Probab=99.32  E-value=1.9e-11  Score=74.90  Aligned_cols=66  Identities=23%  Similarity=0.340  Sum_probs=55.9

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .+++.+|||+|||+|.++..+++.. |..+++++|+++.+++.|++++...+    ...+++++.+|+.+.
T Consensus        64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~----~~~rv~v~~~Da~~~  129 (262)
T PRK04457         64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPE----NGERFEVIEADGAEY  129 (262)
T ss_pred             CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCC----CCCceEEEECCHHHH
Confidence            3456789999999999999999886 77899999999999999999987543    246899999998653

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.32  E-value=2e-11  Score=78.11  Aligned_cols=63  Identities=16%  Similarity=0.093  Sum_probs=56.7

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+||+|||+|.++..++... |+..++|+|+++.++..+.+++..++     ..++.++.+|+..
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~g-----L~NV~~i~~DA~~  183 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLN-----LKNLLIINYDARL  183 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEECCHHH
Confidence            346799999999999999999996 78899999999999999999998877     6789999999864

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=2.2e-11  Score=75.31  Aligned_cols=62  Identities=23%  Similarity=0.253  Sum_probs=51.9

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+.+|+|+|||.|.+++.+++.. |..+++.+|++..+++.|++|+..|+     ..+.++..+|..+
T Consensus       158 ~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~-----~~~~~v~~s~~~~  219 (300)
T COG2813         158 LGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANG-----VENTEVWASNLYE  219 (300)
T ss_pred             CCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcC-----CCccEEEEecccc
Confidence            34599999999999999999996 68899999999999999999999987     3333555555544

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.31  E-value=3e-11  Score=78.60  Aligned_cols=65  Identities=23%  Similarity=0.286  Sum_probs=57.9

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++++++     ..+++++++|+.+
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-----~~~v~~~~~D~~~  312 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-----LTNIETKALDARK  312 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeCCccc
Confidence            4567899999999999999999987667899999999999999999999887     4569999999865

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.31  E-value=1.3e-11  Score=78.51  Aligned_cols=74  Identities=20%  Similarity=0.207  Sum_probs=59.0

Q ss_pred             HHHHHHHhhcCC-CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023           4 ARALELLKDNLK-PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus         4 ~~~~~~~~~~~~-~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      +.+++.+..... .+.++||++||+|.+++.+++.. .  +|+++|+++.+++.+++|+..++     ..+++++.+|+.
T Consensus       193 e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~-~--~v~~vE~~~~ai~~a~~N~~~~~-----~~~v~~~~~d~~  264 (362)
T PRK05031        193 EKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF-R--RVLATEISKPSVAAAQYNIAANG-----IDNVQIIRMSAE  264 (362)
T ss_pred             HHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC-C--EEEEEECCHHHHHHHHHHHHHhC-----CCcEEEEECCHH
Confidence            344455444333 23579999999999999998875 3  79999999999999999999887     568999999987


Q ss_pred             ccc
Q psy8023          83 IQY   85 (88)
Q Consensus        83 ~~~   85 (88)
                      +.+
T Consensus       265 ~~l  267 (362)
T PRK05031        265 EFT  267 (362)
T ss_pred             HHH
Confidence            643

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.31  E-value=2e-11  Score=75.07  Aligned_cols=59  Identities=27%  Similarity=0.367  Sum_probs=50.3

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|.++..+++.. +  +++++|+++.+++.+++++..        .+++++++|+.+
T Consensus        40 ~~~~~~VLEiG~G~G~lt~~L~~~~-~--~v~avE~d~~~~~~~~~~~~~--------~~v~~i~~D~~~   98 (272)
T PRK00274         40 PQPGDNVLEIGPGLGALTEPLLERA-A--KVTAVEIDRDLAPILAETFAE--------DNLTIIEGDALK   98 (272)
T ss_pred             CCCcCeEEEeCCCccHHHHHHHHhC-C--cEEEEECCHHHHHHHHHhhcc--------CceEEEEChhhc
Confidence            4577899999999999999999984 3  799999999999999886532        468899999775

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.31  E-value=2e-11  Score=74.33  Aligned_cols=44  Identities=25%  Similarity=0.419  Sum_probs=39.8

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .++.+|||+|||+|.++..+++.. ++.+++|+|+|+.+++.+++
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~   71 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARE   71 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHh
Confidence            467899999999999999999986 67799999999999999976

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.30  E-value=3.4e-11  Score=73.78  Aligned_cols=64  Identities=31%  Similarity=0.407  Sum_probs=54.2

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .++.+|||+|||+|.++..++... +..+++++|+++.+++.++++.. +.    ...+++++.+|..+.
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~-~~----~~~~i~~~~~d~~~~  170 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAK-HG----LGARVEFLQGDWFEP  170 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHH-hC----CCCcEEEEEccccCc
Confidence            456799999999999999999986 67899999999999999999988 22    245788888887654

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.30  E-value=3.6e-11  Score=74.89  Aligned_cols=64  Identities=17%  Similarity=0.233  Sum_probs=56.2

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..+..+|||+|||+|.+++.+++.. |+.+++++|. +.+++.+++++...+    ..++++++.+|..+
T Consensus       147 ~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~g----l~~rv~~~~~d~~~  210 (306)
T TIGR02716       147 LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKG----VADRMRGIAVDIYK  210 (306)
T ss_pred             CCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCC----ccceEEEEecCccC
Confidence            3566799999999999999999997 7789999998 789999999998877    56789999999874

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.30  E-value=4.9e-11  Score=74.72  Aligned_cols=64  Identities=19%  Similarity=0.245  Sum_probs=48.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      ++.+|||+|||+|.++..+++.   +.+|+++|+|+.+++.++++.+..........+++|..+|+.
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~  207 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE  207 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence            5679999999999999999985   458999999999999999998754200001245677777654

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.30  E-value=3.2e-11  Score=71.28  Aligned_cols=72  Identities=25%  Similarity=0.339  Sum_probs=54.8

Q ss_pred             HHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023           9 LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus         9 ~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      .+.+.+.++..|+|+.||.|.+++.+++.. +..+|+++|++|.+++.++++++.|+    ...++..+++|+.+..
T Consensus        94 Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNk----v~~~i~~~~~D~~~~~  165 (200)
T PF02475_consen   94 RIANLVKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNK----VENRIEVINGDAREFL  165 (200)
T ss_dssp             HHHTC--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-----TTTEEEEES-GGG--
T ss_pred             HHHhcCCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcC----CCCeEEEEcCCHHHhc
Confidence            344456789999999999999999999863 56789999999999999999999998    6678999999988754

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>KOG2904|consensus

Probab=99.30  E-value=2.9e-11  Score=73.95  Aligned_cols=59  Identities=20%  Similarity=0.316  Sum_probs=52.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeC
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTG   79 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   79 (88)
                      ++..++|+|||+|.+++.+++.+ ++++++++|.|+.++..|.+|..++.    ..+++.+++-
T Consensus       148 ~~~~ildlgtGSGaIslsll~~L-~~~~v~AiD~S~~Ai~La~eN~qr~~----l~g~i~v~~~  206 (328)
T KOG2904|consen  148 KHTHILDLGTGSGAISLSLLHGL-PQCTVTAIDVSKAAIKLAKENAQRLK----LSGRIEVIHN  206 (328)
T ss_pred             ccceEEEecCCccHHHHHHHhcC-CCceEEEEeccHHHHHHHHHHHHHHh----hcCceEEEec
Confidence            34579999999999999999998 58999999999999999999999988    6677777744

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=4e-11  Score=72.50  Aligned_cols=68  Identities=29%  Similarity=0.439  Sum_probs=62.0

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      +.++++|+|.|+|+|.++..++...++.++|+..|+.++..+.|++|++..+    ..+++++..+|+.+..
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~----l~d~v~~~~~Dv~~~~  159 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG----LGDRVTLKLGDVREGI  159 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc----cccceEEEeccccccc
Confidence            6899999999999999999999998899999999999999999999999977    5556999999988753

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.29  E-value=5.9e-11  Score=77.32  Aligned_cols=65  Identities=25%  Similarity=0.374  Sum_probs=57.5

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++++.+     ..+++++++|+.+
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-----~~~v~~~~~Da~~  312 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-----ITIIETIEGDARS  312 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-----CCeEEEEeCcccc
Confidence            4577899999999999999999887666799999999999999999999887     4578999999865

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.29  E-value=3.6e-11  Score=73.68  Aligned_cols=61  Identities=23%  Similarity=0.278  Sum_probs=50.6

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||+|..+..++...  +.+|+++|+++.+++.++++...       ..++.+..+|+.+
T Consensus        50 l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~-------~~~i~~~~~D~~~  110 (263)
T PTZ00098         50 LNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD-------KNKIEFEANDILK  110 (263)
T ss_pred             CCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc-------CCceEEEECCccc
Confidence            4678899999999999999888764  56899999999999999997654       2467888888654

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.29  E-value=1.8e-11  Score=76.83  Aligned_cols=61  Identities=21%  Similarity=0.352  Sum_probs=50.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++.+|||+|||+|.++..+++.   +.+|+|+|.++.+++.|+++....+    ...+++++++|+++
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~----~~~~i~~~~~dae~  191 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDP----VTSTIEYLCTTAEK  191 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcC----cccceeEEecCHHH
Confidence            4569999999999999988863   5689999999999999998876544    23578888888654

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.29  E-value=4.3e-11  Score=77.75  Aligned_cols=65  Identities=25%  Similarity=0.279  Sum_probs=58.3

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||.|..+..+++..++.++++++|+++.+++.+++++++++     ..+++++++|+.+
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-----~~~v~~~~~D~~~  314 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-----LKSIKILAADSRN  314 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-----CCeEEEEeCChhh
Confidence            4578899999999999999999987667899999999999999999999987     5679999999875

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.29  E-value=4.3e-11  Score=74.10  Aligned_cols=59  Identities=24%  Similarity=0.224  Sum_probs=49.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+|+.+++.++++....+     . ++++...|+..
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~-----l-~v~~~~~D~~~  178 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKEN-----L-NIRTGLYDINS  178 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcC-----C-ceEEEEechhc
Confidence            4459999999999999999885   4589999999999999999988766     2 57777776643

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.28  E-value=5.9e-11  Score=69.69  Aligned_cols=70  Identities=23%  Similarity=0.312  Sum_probs=50.5

Q ss_pred             HHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023           3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      |..+++.+.  ..++.++||+|||.|..+.+++++   +..|+++|+|+.+++.+++.....+      -.++....|+.
T Consensus        19 hs~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~------l~i~~~~~Dl~   87 (192)
T PF03848_consen   19 HSEVLEAVP--LLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEG------LDIRTRVADLN   87 (192)
T ss_dssp             -HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BGC
T ss_pred             cHHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcC------ceeEEEEecch
Confidence            344444443  335669999999999999999997   4579999999999999999887765      23777777765


Q ss_pred             c
Q psy8023          83 I   83 (88)
Q Consensus        83 ~   83 (88)
                      +
T Consensus        88 ~   88 (192)
T PF03848_consen   88 D   88 (192)
T ss_dssp             C
T ss_pred             h
Confidence            4

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>KOG1540|consensus

Probab=99.28  E-value=7.3e-11  Score=71.57  Aligned_cols=79  Identities=22%  Similarity=0.317  Sum_probs=60.6

Q ss_pred             HHHHHHHHhhcC--CCCCeEEEecCCCChHHHHHHHHhCCC-----ceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceE
Q psy8023           3 NARALELLKDNL--KPGAKVLDIGSGSGYLTACFADLVGSN-----GEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFE   75 (88)
Q Consensus         3 ~~~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~l~~~~~~~-----~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~   75 (88)
                      |+.+........  .+++++||++||||.++..+.+..+..     .+|+..|+|++|+..++++..+.+  .....++.
T Consensus        85 HRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~--l~~~~~~~  162 (296)
T KOG1540|consen   85 HRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP--LKASSRVE  162 (296)
T ss_pred             hHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcC--CCcCCceE
Confidence            344444444443  456799999999999999999987543     799999999999999999986644  01234599


Q ss_pred             EeeCCccc
Q psy8023          76 PQTGEGDI   83 (88)
Q Consensus        76 ~~~~d~~~   83 (88)
                      |+++|+++
T Consensus       163 w~~~dAE~  170 (296)
T KOG1540|consen  163 WVEGDAED  170 (296)
T ss_pred             EEeCCccc
Confidence            99999875

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.28  E-value=4.2e-11  Score=71.47  Aligned_cols=61  Identities=16%  Similarity=0.139  Sum_probs=53.0

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++|||+|||+|..+..+++.. ++.+++++|+|+.+++.+++++...+    ...+++++..|..+
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~g----l~~~i~~~~~d~~~   61 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALG----LQGRIRIFYRDSAK   61 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcC----CCcceEEEeccccc
Confidence            379999999999999999886 56789999999999999999998766    55688888888754

>PRK08317 hypothetical protein; Provisional

Probab=99.28  E-value=8.3e-11  Score=70.25  Aligned_cols=64  Identities=27%  Similarity=0.424  Sum_probs=52.2

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||+|.++..++...++.++++++|+++.+++.++++...      ...++++..+|+.+
T Consensus        17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~------~~~~~~~~~~d~~~   80 (241)
T PRK08317         17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG------LGPNVEFVRGDADG   80 (241)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC------CCCceEEEeccccc
Confidence            46778999999999999999999876678999999999999999988332      13567777777653

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.28  E-value=8.5e-11  Score=70.36  Aligned_cols=65  Identities=28%  Similarity=0.476  Sum_probs=53.9

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|..+..++...++..+++++|+++.+++.+++++..++    ...++.+..+|+.+
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~  114 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG----LSGNVEFVQGDAEA  114 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc----cccCeEEEeccccc
Confidence            356799999999999999999987436899999999999999999987654    34567888887654

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.28  E-value=3e-11  Score=77.24  Aligned_cols=61  Identities=15%  Similarity=0.114  Sum_probs=53.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ++.+|||+|||+|.+++.++..   ..+++++|+++.+++.|++|.+.++     ..+++++.+|+.+.
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~-----~~~~~~~~~d~~~~  293 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLG-----LDNLSFAALDSAKF  293 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEECCHHHH
Confidence            4579999999999999999864   3479999999999999999999887     45899999998653

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.27  E-value=3.1e-11  Score=70.50  Aligned_cols=65  Identities=25%  Similarity=0.385  Sum_probs=51.8

Q ss_pred             HHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023           8 ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus         8 ~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      +.+.++++++.+|||+|||.|.+...+.+.  ++.+.+|+|++++.+..+.++    +        +.++++|+.++++
T Consensus         5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----G--------v~Viq~Dld~gL~   69 (193)
T PF07021_consen    5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----G--------VSVIQGDLDEGLA   69 (193)
T ss_pred             HHHHHHcCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----C--------CCEEECCHHHhHh
Confidence            455667889999999999999999888886  478999999999888777653    3        4577777776553

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.27  E-value=8e-11  Score=76.47  Aligned_cols=65  Identities=25%  Similarity=0.392  Sum_probs=58.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|+.+..++...++.++|+++|+++.+++.+++++++.+     ..++++..+|+.+
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-----~~~v~~~~~Da~~  299 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK-----LSSIEIKIADAER  299 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEECchhh
Confidence            5678899999999999999999988677899999999999999999999887     4568899998764

>KOG2187|consensus

Probab=99.27  E-value=5.5e-12  Score=82.14  Aligned_cols=73  Identities=21%  Similarity=0.229  Sum_probs=62.1

Q ss_pred             HHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023           3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      +..+-+++.  ++.++.++|++||||.+++.+++...   +|+|+|+++++++.|++|...|+     ..|.+|+++-++
T Consensus       372 ys~i~e~~~--l~~~k~llDv~CGTG~iglala~~~~---~ViGvEi~~~aV~dA~~nA~~Ng-----isNa~Fi~gqaE  441 (534)
T KOG2187|consen  372 YSTIGEWAG--LPADKTLLDVCCGTGTIGLALARGVK---RVIGVEISPDAVEDAEKNAQING-----ISNATFIVGQAE  441 (534)
T ss_pred             HHHHHHHhC--CCCCcEEEEEeecCCceehhhhcccc---ceeeeecChhhcchhhhcchhcC-----ccceeeeecchh
Confidence            444445554  57788999999999999999999864   49999999999999999999998     889999999766


Q ss_pred             ccc
Q psy8023          83 IQY   85 (88)
Q Consensus        83 ~~~   85 (88)
                      +.+
T Consensus       442 ~~~  444 (534)
T KOG2187|consen  442 DLF  444 (534)
T ss_pred             hcc
Confidence            654

>PRK14968 putative methyltransferase; Provisional

Probab=99.27  E-value=9.5e-11  Score=68.01  Aligned_cols=63  Identities=24%  Similarity=0.317  Sum_probs=51.8

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcc-eEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIK-FEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~d~~~~   84 (88)
                      .++.+|||+|||+|.++..++..   ..+++++|+++.+++.+++++..++    ...+ +.++.+|..+.
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~~~~d~~~~   85 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNN----IRNNGVEVIRSDLFEP   85 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcC----CCCcceEEEecccccc
Confidence            56779999999999999999887   4589999999999999999998766    2112 77888876654

>KOG1271|consensus

Probab=99.27  E-value=3e-11  Score=70.18  Aligned_cols=61  Identities=18%  Similarity=0.195  Sum_probs=53.4

Q ss_pred             eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +|||+|||+|.+...+++.- -....+|+|+|+.+++.|+...++.+    ....++|.+.|++++
T Consensus        70 ~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~----~~n~I~f~q~DI~~~  130 (227)
T KOG1271|consen   70 RVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDG----FSNEIRFQQLDITDP  130 (227)
T ss_pred             ceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcC----CCcceeEEEeeccCC
Confidence            99999999999999998873 45569999999999999999998887    455699999999873

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.26  E-value=8.7e-11  Score=70.24  Aligned_cols=60  Identities=20%  Similarity=0.295  Sum_probs=49.7

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG   81 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (88)
                      .++.+|||+|||+|.++..+++..   .+++++|+++.+++.++++....+    ...++++..+|.
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~----~~~~i~~~~~d~  121 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAG----LAGNITFEVGDL  121 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC----CccCcEEEEcCc
Confidence            456799999999999999998763   469999999999999999987765    235778887774

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=99.26  E-value=1.4e-11  Score=78.17  Aligned_cols=71  Identities=21%  Similarity=0.219  Sum_probs=52.3

Q ss_pred             HHHHHHhhcCCC-CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           5 RALELLKDNLKP-GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         5 ~~~~~~~~~~~~-~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+++.+...+.. +..+||+.||.|.+++.++....   +|+|+|+++++++.|++|.+.++     ..+++|+.+++.+
T Consensus       184 ~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~-----i~n~~f~~~~~~~  255 (352)
T PF05958_consen  184 KLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNG-----IDNVEFIRGDAED  255 (352)
T ss_dssp             HHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE--SHH
T ss_pred             HHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcC-----CCcceEEEeeccc
Confidence            344444444432 23799999999999999999753   69999999999999999999998     7899999887653

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.26  E-value=6.2e-11  Score=77.56  Aligned_cols=62  Identities=26%  Similarity=0.347  Sum_probs=51.7

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||+|..+..+++..  +.+++|+|+|+.+++.|+++....      ..++++..+|+.+
T Consensus       264 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~------~~~v~~~~~d~~~  325 (475)
T PLN02336        264 LKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGR------KCSVEFEVADCTK  325 (475)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcC------CCceEEEEcCccc
Confidence            4567899999999999999998875  568999999999999999886532      3578888888764

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.26  E-value=5.3e-11  Score=72.75  Aligned_cols=60  Identities=30%  Similarity=0.336  Sum_probs=51.4

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|.++..+++..   .+++++|+++.+++.+++++..       ..+++++++|+.+
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~-------~~~v~ii~~D~~~   86 (258)
T PRK14896         27 DTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIA-------AGNVEIIEGDALK   86 (258)
T ss_pred             CCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhcc-------CCCEEEEEecccc
Confidence            4567899999999999999999873   3799999999999999988754       2478999999875

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.26  E-value=5.9e-11  Score=69.65  Aligned_cols=64  Identities=19%  Similarity=-0.001  Sum_probs=55.2

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      -++.++||++||+|.+++.++.+..  .+++++|.++.+++.+++|++.++    ...+++++.+|+.+.
T Consensus        48 ~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~----~~~~~~~~~~D~~~~  111 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLK----SGEQAEVVRNSALRA  111 (189)
T ss_pred             cCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhC----CcccEEEEehhHHHH
Confidence            3578999999999999999999852  489999999999999999999887    345789999998653

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.26  E-value=2.7e-11  Score=71.91  Aligned_cols=61  Identities=16%  Similarity=0.205  Sum_probs=50.7

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      ....+|.|+|||.|..+..+++++ |..+++|+|-|+.|++.|+++..          +++|..+|+.++-|
T Consensus        29 ~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rlp----------~~~f~~aDl~~w~p   89 (257)
T COG4106          29 ERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRLP----------DATFEEADLRTWKP   89 (257)
T ss_pred             cccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhCC----------CCceecccHhhcCC
Confidence            345689999999999999999999 88999999999999999977644          35577777665443

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.25  E-value=9.2e-11  Score=74.24  Aligned_cols=60  Identities=22%  Similarity=0.228  Sum_probs=49.2

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..+|||+|||+|.++..+++.. +..+++++|+++.+++.++++++.++    .  ..+++.+|...
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~----l--~~~~~~~D~~~  256 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANG----L--EGEVFASNVFS  256 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----C--CCEEEEccccc
Confidence            4589999999999999999985 66789999999999999999998876    1  23555555543

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.25  E-value=1.2e-10  Score=67.66  Aligned_cols=60  Identities=15%  Similarity=0.172  Sum_probs=50.4

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|.++..+++.. +  +++++|+++.+++.++++...++      .+++++.+|..+
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~   77 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKG-K--CILTTDINPFAVKELRENAKLNN------VGLDVVMTDLFK   77 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcC-C--EEEEEECCHHHHHHHHHHHHHcC------CceEEEEccccc
Confidence            455789999999999999999874 3  89999999999999999998765      257777777654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PLN02672 methionine S-methyltransferase

Probab=99.25  E-value=3.5e-11  Score=84.51  Aligned_cols=68  Identities=13%  Similarity=0.157  Sum_probs=56.2

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCC-----------CCCcceEEeeCCccccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPEL-----------LPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~~d~~~~~   85 (88)
                      +.+|+|+|||+|.+++.+++.. +..+++++|+|+.+++.|++|++.++...           ....+++++++|..+.+
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~  197 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC  197 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence            4689999999999999999986 56799999999999999999998764110           12357999999987654

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.24  E-value=9e-11  Score=71.36  Aligned_cols=76  Identities=20%  Similarity=0.229  Sum_probs=64.2

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .++..+.. ..+.++|||+|+++|+.++.++...+++++++.+|.+++..+.|+++++..+    ...+++++.+|+.+.
T Consensus        69 ~lL~~l~~-~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag----~~~~I~~~~G~a~e~  143 (247)
T PLN02589         69 QFLNMLLK-LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG----VAHKIDFREGPALPV  143 (247)
T ss_pred             HHHHHHHH-HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC----CCCceEEEeccHHHH
Confidence            34444443 3355699999999999999999988778999999999999999999999988    678999999998775


Q ss_pred             c
Q psy8023          85 Y   85 (88)
Q Consensus        85 ~   85 (88)
                      +
T Consensus       144 L  144 (247)
T PLN02589        144 L  144 (247)
T ss_pred             H
Confidence            4

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=99.24  E-value=2.9e-11  Score=69.33  Aligned_cols=59  Identities=25%  Similarity=0.171  Sum_probs=50.3

Q ss_pred             eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .|+|++||.|+.++.+++.+ .  +|+++|+++..++.++.|.+-++    ..++++++++|..+.
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~-~--~Viaidid~~~~~~a~hNa~vYG----v~~~I~~i~gD~~~~   60 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTF-D--RVIAIDIDPERLECAKHNAEVYG----VADNIDFICGDFFEL   60 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-----GGGEEEEES-HHHH
T ss_pred             EEEEeccCcCHHHHHHHHhC-C--eEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEeCCHHHH
Confidence            68999999999999999986 3  69999999999999999999998    778999999998764

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK05785 hypothetical protein; Provisional

Probab=99.24  E-value=6.9e-11  Score=71.04  Aligned_cols=52  Identities=21%  Similarity=0.306  Sum_probs=42.1

Q ss_pred             HHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023           7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus         7 ~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      +..+.....++.+|||+|||+|..+..+++..  +.+++|+|+|++|++.+++.
T Consensus        42 ~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~   93 (226)
T PRK05785         42 VKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA   93 (226)
T ss_pred             HHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc
Confidence            34443333457899999999999999998875  46899999999999999875

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.23  E-value=1.1e-10  Score=75.09  Aligned_cols=65  Identities=17%  Similarity=0.062  Sum_probs=54.4

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCC-cceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPN-IKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~d~~~~   84 (88)
                      ..++++|||+|||+|.+++..+..  ...+|+++|+|+.+++.+++|+..++    .. .+++++++|+.+.
T Consensus       218 ~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ng----l~~~~v~~i~~D~~~~  283 (396)
T PRK15128        218 YVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNK----LDLSKAEFVRDDVFKL  283 (396)
T ss_pred             hcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcC----CCCCcEEEEEccHHHH
Confidence            346789999999999998876643  34589999999999999999999987    32 4799999998764

>PLN03075 nicotianamine synthase; Provisional

Probab=99.22  E-value=2.1e-10  Score=71.19  Aligned_cols=65  Identities=12%  Similarity=0.027  Sum_probs=52.9

Q ss_pred             CCCeEEEecCCCC-hHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhh-cCCCCCCCcceEEeeCCcccc
Q psy8023          16 PGAKVLDIGSGSG-YLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ-GNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        16 ~~~~vlD~g~G~G-~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ++++|+|+|||.| ..++.++....++++++++|+++++++.|++.++. .+    ...+++|..+|+.+.
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g----L~~rV~F~~~Da~~~  189 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD----LSKRMFFHTADVMDV  189 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC----ccCCcEEEECchhhc
Confidence            6689999999966 44555665555888999999999999999999965 44    457899999998764

>PRK14967 putative methyltransferase; Provisional

Probab=99.22  E-value=9.8e-11  Score=70.13  Aligned_cols=62  Identities=29%  Similarity=0.401  Sum_probs=51.2

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||+|.++..++...  ..+++++|+++.+++.++++...++     . +++++.+|..+
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~--~~~v~~vD~s~~~l~~a~~n~~~~~-----~-~~~~~~~d~~~   95 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAG--AGSVTAVDISRRAVRSARLNALLAG-----V-DVDVRRGDWAR   95 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhC-----C-eeEEEECchhh
Confidence            4567899999999999999988752  3589999999999999999998765     2 47777777754

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.22  E-value=2e-10  Score=68.57  Aligned_cols=75  Identities=23%  Similarity=0.304  Sum_probs=62.6

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEee-CCccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQT-GEGDI   83 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~   83 (88)
                      .++..+.. ....++|||+|++.|+.++.++...+.+++++.+|.+++..+.|++++++.+    ...+++++. +|+.+
T Consensus        49 ~~L~~L~~-~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag----~~~~i~~~~~gdal~  123 (219)
T COG4122          49 ALLRLLAR-LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG----VDDRIELLLGGDALD  123 (219)
T ss_pred             HHHHHHHH-hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC----CcceEEEEecCcHHH
Confidence            34444443 4567899999999999999999998668999999999999999999999988    666788888 47765


Q ss_pred             c
Q psy8023          84 Q   84 (88)
Q Consensus        84 ~   84 (88)
                      .
T Consensus       124 ~  124 (219)
T COG4122         124 V  124 (219)
T ss_pred             H
Confidence            3

>KOG1270|consensus

Probab=99.22  E-value=3.7e-11  Score=72.97  Aligned_cols=64  Identities=20%  Similarity=0.293  Sum_probs=48.4

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCC-CCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELL-PNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~d~~~   83 (88)
                      +++|||+|||+|.++.++++.-   .+|+|+|.++.+++.|++..+....... -.-++++.+.|++.
T Consensus        90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~  154 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG  154 (282)
T ss_pred             CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh
Confidence            5789999999999999999983   4799999999999999999444331110 11246677777654

>TIGR00755 ksgA dimethyladenosine transferase

Probab=99.22  E-value=1.4e-10  Score=70.68  Aligned_cols=60  Identities=27%  Similarity=0.350  Sum_probs=50.6

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|.++..+++.. +  +++++|+++.+++.++++...       ..+++++++|+.+
T Consensus        27 ~~~~~~VLEiG~G~G~lt~~L~~~~-~--~v~~iE~d~~~~~~l~~~~~~-------~~~v~v~~~D~~~   86 (253)
T TIGR00755        27 VLEGDVVLEIGPGLGALTEPLLKRA-K--KVTAIEIDPRLAEILRKLLSL-------YERLEVIEGDALK   86 (253)
T ss_pred             CCCcCEEEEeCCCCCHHHHHHHHhC-C--cEEEEECCHHHHHHHHHHhCc-------CCcEEEEECchhc
Confidence            3567899999999999999999986 3  599999999999999987643       3478888888765

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.19  E-value=2.2e-10  Score=73.52  Aligned_cols=47  Identities=34%  Similarity=0.450  Sum_probs=42.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      +.++.+|||+|||+|..+..+++..  +.+|+++|+|+++++.++++..
T Consensus       165 l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~  211 (383)
T PRK11705        165 LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA  211 (383)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc
Confidence            4678899999999999999999875  5689999999999999999874

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.19  E-value=3.8e-11  Score=72.14  Aligned_cols=47  Identities=28%  Similarity=0.549  Sum_probs=43.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      ++.+|||+|||.|.++..+++.   +.+|+|+|+++.+++.|+......+
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~g  105 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESG  105 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcc
Confidence            7889999999999999999997   3579999999999999999888766

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.19  E-value=1.5e-10  Score=79.00  Aligned_cols=65  Identities=12%  Similarity=0.039  Sum_probs=55.7

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCC-cceEEeeCCccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPN-IKFEPQTGEGDIQY   85 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~d~~~~~   85 (88)
                      .++++|||+|||+|.+++.++...  ..+|+++|+|+.+++.+++|+..++    .. .+++++++|+.+.+
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng----~~~~~v~~i~~D~~~~l  602 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNG----LSGRQHRLIQADCLAWL  602 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhC----CCccceEEEEccHHHHH
Confidence            467899999999999999999862  3479999999999999999999987    33 58999999987643

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.18  E-value=2.1e-10  Score=72.21  Aligned_cols=62  Identities=16%  Similarity=0.176  Sum_probs=52.2

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||.|||+|.+++..+..   +.+++|+|+++.+++.+++|++.++     ..++++..+|+.+
T Consensus       180 ~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g-----~~~i~~~~~D~~~  241 (329)
T TIGR01177       180 VTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYG-----IEDFFVKRGDATK  241 (329)
T ss_pred             CCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhC-----CCCCeEEecchhc
Confidence            567889999999999998886654   4589999999999999999998877     3447888888765

This family is found exclusively in the Archaea.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.18  E-value=2.8e-10  Score=59.05  Aligned_cols=53  Identities=25%  Similarity=0.465  Sum_probs=43.2

Q ss_pred             EEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          21 LDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        21 lD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ||+|||+|..+..+++.  +..+++++|+++.+++.++++....+        +.+..+|.++
T Consensus         1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~--------~~~~~~d~~~   53 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG--------VSFRQGDAED   53 (95)
T ss_dssp             EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST--------EEEEESBTTS
T ss_pred             CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC--------chheeehHHh
Confidence            79999999999999998  56789999999999999999887644        4477777654

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK06202 hypothetical protein; Provisional

Probab=99.18  E-value=1.3e-10  Score=69.82  Aligned_cols=49  Identities=33%  Similarity=0.443  Sum_probs=40.7

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHhhhh
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLV---GSNGEVTAVELIPEVLQFTHYNIQQ   63 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~   63 (88)
                      .++.+|||+|||+|.++..+++..   +++.+++|+|+++.+++.++++...
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~  110 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR  110 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc
Confidence            356799999999999999888653   3456899999999999999987653

>PTZ00146 fibrillarin; Provisional

Probab=99.18  E-value=2.3e-10  Score=70.89  Aligned_cols=63  Identities=30%  Similarity=0.389  Sum_probs=48.7

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||+|.++..++...++..+|+++|+++.+.+...+..+..       .++.++.+|+..
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-------~NI~~I~~Da~~  192 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-------PNIVPIIEDARY  192 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-------CCCEEEECCccC
Confidence            568889999999999999999999877789999999998665555544321       245666666643

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.18  E-value=3.5e-10  Score=73.40  Aligned_cols=63  Identities=24%  Similarity=0.262  Sum_probs=54.5

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|..+..+++.. ++.+++++|+++.+++.+++++++++     . +++++++|+.+
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g-----~-~~~~~~~D~~~  304 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLG-----L-KATVIVGDARD  304 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcC-----C-CeEEEEcCccc
Confidence            4678899999999999999999986 44799999999999999999999876     2 36788888764

>PRK06922 hypothetical protein; Provisional

Probab=99.18  E-value=1.6e-10  Score=77.78  Aligned_cols=62  Identities=13%  Similarity=0.292  Sum_probs=50.9

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|..+..+++.. ++.+++|+|+|+.+++.|+++....+      .+++++++|+.+
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g------~~ie~I~gDa~d  478 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG------RSWNVIKGDAIN  478 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC------CCeEEEEcchHh
Confidence            357899999999999999998876 78899999999999999998865433      356677777653

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.17  E-value=2.7e-10  Score=71.56  Aligned_cols=58  Identities=17%  Similarity=0.182  Sum_probs=49.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc-CCCCCCCcceEEee
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG-NPELLPNIKFEPQT   78 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~   78 (88)
                      ++.++||+|||+|.+...++... ++.+++|+|+++.+++.|++++..+ +    ...++++..
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~----l~~~I~~~~  172 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPG----LNGAIRLRL  172 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccC----CcCcEEEEE
Confidence            35689999999999888888775 5789999999999999999999998 5    455677653

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.17  E-value=3.3e-10  Score=67.64  Aligned_cols=66  Identities=18%  Similarity=0.024  Sum_probs=48.0

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCC-------CCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNP-------ELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~d~~~   83 (88)
                      +++.+|||+|||.|..+..++.+   +.+|+|+|+|+.+++.+.+.......       ......++++.++|..+
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~  105 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFA  105 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCC
Confidence            46679999999999999999985   55799999999999986432211000       00013578899999865

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.16  E-value=3.1e-10  Score=66.93  Aligned_cols=64  Identities=13%  Similarity=0.131  Sum_probs=54.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      +...+||+|||.|.+...+|... |+..++|+|+....+..+.+++...+     ..|+.++++|+...+
T Consensus        17 ~~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~-----l~Nv~~~~~da~~~l   80 (195)
T PF02390_consen   17 DNPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRG-----LKNVRFLRGDARELL   80 (195)
T ss_dssp             CCEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHT-----TSSEEEEES-CTTHH
T ss_pred             CCCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhc-----ccceEEEEccHHHHH
Confidence            33489999999999999999997 88999999999999999999998877     899999999988743

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK00811 spermidine synthase; Provisional

Probab=99.15  E-value=3.5e-10  Score=70.01  Aligned_cols=69  Identities=20%  Similarity=0.154  Sum_probs=54.2

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +++++||++|||.|..+..+++.. +..+|+++|+++.+++.|++++...+.......+++++.+|+.+.
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~  143 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKF  143 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHH
Confidence            456799999999999999998763 456899999999999999999865431111246788999988653

>KOG1661|consensus

Probab=99.15  E-value=2e-10  Score=67.90  Aligned_cols=85  Identities=45%  Similarity=0.784  Sum_probs=70.8

Q ss_pred             cHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhhhcCC-----CCCCCcceE
Q psy8023           2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGE-VTAVELIPEVLQFTHYNIQQGNP-----ELLPNIKFE   75 (88)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~-----~~~~~~~~~   75 (88)
                      ||+.+++.+..++.++..+||+|+|+|+++..++...+.++. ..|+|.-++.++.+++++...-.     ......++.
T Consensus        68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~  147 (237)
T KOG1661|consen   68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS  147 (237)
T ss_pred             HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence            688999999999999999999999999999999987765554 49999999999999999876431     113457889


Q ss_pred             EeeCCcccccc
Q psy8023          76 PQTGEGDIQYL   86 (88)
Q Consensus        76 ~~~~d~~~~~~   86 (88)
                      ++.+|..++++
T Consensus       148 ivvGDgr~g~~  158 (237)
T KOG1661|consen  148 IVVGDGRKGYA  158 (237)
T ss_pred             EEeCCccccCC
Confidence            99999988764

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.15  E-value=6.2e-10  Score=72.23  Aligned_cols=64  Identities=22%  Similarity=0.285  Sum_probs=53.0

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      ..++.+|||+|||+|..+..+++..+ .++++++|+++.+++.+++++++.+    ...++.+..+|..
T Consensus       236 ~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g----~~~~v~~~~~d~~  299 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLG----LTIKAETKDGDGR  299 (426)
T ss_pred             CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeccccc
Confidence            45788999999999999999999874 6899999999999999999999877    2223444666654

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.14  E-value=4.6e-12  Score=66.98  Aligned_cols=44  Identities=25%  Similarity=0.462  Sum_probs=38.3

Q ss_pred             EEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          21 LDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        21 lD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      ||+|||+|..+..+.+.. +..+++++|+|+.+++.+++++....
T Consensus         1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~   44 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELG   44 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT
T ss_pred             CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC
Confidence            799999999999999997 78899999999999999999988765

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.14  E-value=6.8e-10  Score=69.84  Aligned_cols=63  Identities=16%  Similarity=0.041  Sum_probs=46.3

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|.++..++...  ..+|+|+|.|+.++..++...+..+    ...+++++.+|+.+
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g--~~~V~GiD~S~~~l~q~~a~~~~~~----~~~~i~~~~~d~e~  183 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAG--AKLVVGIDPSQLFLCQFEAVRKLLG----NDQRAHLLPLGIEQ  183 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHhcC----CCCCeEEEeCCHHH
Confidence            357899999999999999998874  2369999999998876544333222    13467888877653

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.13  E-value=5.7e-10  Score=68.62  Aligned_cols=45  Identities=22%  Similarity=0.462  Sum_probs=38.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHh
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGS--NGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~--~~~v~~~D~~~~~~~~a~~~   60 (88)
                      +..+|||+|||+|.++..+++..+.  ..+++|+|+|+.+++.|+++
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~  131 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR  131 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh
Confidence            4568999999999999999887632  23799999999999999875

>KOG1541|consensus

Probab=99.13  E-value=2.6e-10  Score=68.04  Aligned_cols=73  Identities=25%  Similarity=0.242  Sum_probs=52.7

Q ss_pred             cHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023           2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG   81 (88)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (88)
                      |..+.++.+.-.-+...-|||+|||+|..+..+...   +-..+|+|+|+.|++.|.+.--+          -+++.+|.
T Consensus        36 m~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e~e----------gdlil~DM  102 (270)
T KOG1541|consen   36 MAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERELE----------GDLILCDM  102 (270)
T ss_pred             HHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhhhh----------cCeeeeec
Confidence            345666666622223568999999999998887764   45799999999999999973222          24677777


Q ss_pred             cccccc
Q psy8023          82 DIQYLL   87 (88)
Q Consensus        82 ~~~~~~   87 (88)
                      -+++||
T Consensus       103 G~Glpf  108 (270)
T KOG1541|consen  103 GEGLPF  108 (270)
T ss_pred             CCCCCC
Confidence            777765

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.12  E-value=7.6e-10  Score=66.18  Aligned_cols=57  Identities=26%  Similarity=0.456  Sum_probs=45.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      ++.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++...         +++++.+|+.
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~---------~~~~~~~d~~   90 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLSE---------NVQFICGDAE   90 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcCC---------CCeEEecchh
Confidence            34689999999999999999986 677899999999999999876541         3455555554

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.12  E-value=5.7e-10  Score=67.72  Aligned_cols=44  Identities=27%  Similarity=0.467  Sum_probs=37.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      +..+|||+|||+|..+..++..   ..+++++|+|+.+++.++++..
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~   85 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA   85 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC
Confidence            4578999999999998888764   4589999999999999988753

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.12  E-value=1.1e-09  Score=64.98  Aligned_cols=62  Identities=26%  Similarity=0.389  Sum_probs=50.0

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|..+..+++..++..+++++|+++.+++.++++..  .     ..++++..+|+.+
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~-----~~~i~~~~~d~~~   99 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--L-----PLNIEFIQADAEA   99 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--c-----CCCceEEecchhc
Confidence            367899999999999999999987433789999999999999998875  2     3456677766654

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=99.11  E-value=3.9e-10  Score=71.11  Aligned_cols=68  Identities=24%  Similarity=0.329  Sum_probs=59.5

Q ss_pred             cCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      ...+|.+|+|+.+|.|.+++.++....+  +|+++|++|.+++.+++|++.|+    ....+..+++|+.+-.+
T Consensus       185 ~v~~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~----v~~~v~~i~gD~rev~~  252 (341)
T COG2520         185 LVKEGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNK----VEGRVEPILGDAREVAP  252 (341)
T ss_pred             hhcCCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcC----ccceeeEEeccHHHhhh
Confidence            4567999999999999999999998533  49999999999999999999998    55669999999987544

>PHA03411 putative methyltransferase; Provisional

Probab=99.08  E-value=1.4e-09  Score=66.98  Aligned_cols=57  Identities=26%  Similarity=0.285  Sum_probs=45.5

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +..+|||+|||+|.++..++... +..+++++|+++.+++.++++..          +++++++|+.+
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~~----------~v~~v~~D~~e  120 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLLP----------EAEWITSDVFE  120 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCc----------CCEEEECchhh
Confidence            45689999999999999888874 35689999999999999988632          35566666654

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.08  E-value=7.2e-10  Score=70.12  Aligned_cols=60  Identities=22%  Similarity=0.310  Sum_probs=47.9

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|.++..+++.. +..+++++|.++++++.++++...        .+++++.+|+.+
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~--------~~i~~i~gD~e~  171 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL--------KECKIIEGDAED  171 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhc--------cCCeEEeccHHh
Confidence            356799999999999999998876 457899999999999999987542        235566666543

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=1.2e-09  Score=66.72  Aligned_cols=60  Identities=25%  Similarity=0.361  Sum_probs=52.7

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++..|||+|+|.|.++..+++...   +|+++|+++.+++..++....       ..+++++.+|+.+
T Consensus        28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~-------~~n~~vi~~DaLk   87 (259)
T COG0030          28 ISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAP-------YDNLTVINGDALK   87 (259)
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhccc-------ccceEEEeCchhc
Confidence            45678999999999999999999853   599999999999999998773       4689999999886

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.08  E-value=9.9e-10  Score=65.80  Aligned_cols=68  Identities=19%  Similarity=0.049  Sum_probs=49.0

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCC-------CCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNP-------ELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~d~~~~   84 (88)
                      .+++.+|||+|||.|..+..++.+   +.+|+|+|+|+.+++.+.+.......       ......++++.++|+.+.
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l  109 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL  109 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCC
Confidence            346679999999999999999985   56899999999999987432111000       000245788999988753

>TIGR00452 methyltransferase, putative

Probab=99.07  E-value=1.3e-09  Score=68.30  Aligned_cols=43  Identities=21%  Similarity=0.232  Sum_probs=35.5

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .++++|||+|||+|.++..++...  ..+|+|+|.|+.++..++.
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g--~~~v~GiDpS~~ml~q~~~  162 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHG--AKSLVGIDPTVLFLCQFEA  162 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHH
Confidence            467899999999999998888763  2479999999999876543

Known examples to date are restricted to the proteobacteria.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.06  E-value=1.3e-09  Score=64.07  Aligned_cols=49  Identities=24%  Similarity=0.321  Sum_probs=39.7

Q ss_pred             HHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023           9 LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus         9 ~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .+...++++.+|||+|||+|.++..+++..  ..+++++|+++++++.+++
T Consensus         6 ~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~   54 (194)
T TIGR02081         6 SILNLIPPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA   54 (194)
T ss_pred             HHHHhcCCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH
Confidence            344445677899999999999998887754  4578999999999988864

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.06  E-value=7.9e-10  Score=65.81  Aligned_cols=38  Identities=32%  Similarity=0.685  Sum_probs=34.3

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP   51 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~   51 (88)
                      +.++.+|||+|||+|.++..+++..++.++|+++|+++
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~   86 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP   86 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence            46788999999999999999999876678999999998

>KOG1499|consensus

Probab=99.03  E-value=1.4e-09  Score=68.41  Aligned_cols=62  Identities=23%  Similarity=0.251  Sum_probs=54.2

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      -+++.|||+|||+|.++.+.++..  -.+|+++|.|. +.+.|++.+..|+    ....++++.+.+++
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~-ia~~a~~iv~~N~----~~~ii~vi~gkvEd  120 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASS-IADFARKIVKDNG----LEDVITVIKGKVED  120 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhC--cceEEEEechH-HHHHHHHHHHhcC----ccceEEEeecceEE
Confidence            478899999999999999999986  34899999998 5599999999998    66678999988776

>PRK01581 speE spermidine synthase; Validated

Probab=99.03  E-value=2.3e-09  Score=68.26  Aligned_cols=82  Identities=11%  Similarity=0.080  Sum_probs=57.4

Q ss_pred             HHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh--hhcCCCCCCCcceEEeeCC
Q psy8023           3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI--QQGNPELLPNIKFEPQTGE   80 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~d   80 (88)
                      |+.+++......+...+||++|||.|..+..+++. ++..+++++|+++++++.|++..  ...++......+++++.+|
T Consensus       137 HE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~D  215 (374)
T PRK01581        137 HEALVHPIMSKVIDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCD  215 (374)
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECc
Confidence            34444444333456679999999999988888876 35679999999999999999732  2111111235688999999


Q ss_pred             ccccc
Q psy8023          81 GDIQY   85 (88)
Q Consensus        81 ~~~~~   85 (88)
                      +.+.+
T Consensus       216 a~~fL  220 (374)
T PRK01581        216 AKEFL  220 (374)
T ss_pred             HHHHH
Confidence            87643

>KOG3191|consensus

Probab=99.02  E-value=2.2e-09  Score=62.37  Aligned_cols=63  Identities=21%  Similarity=0.295  Sum_probs=54.8

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ...++|+|||+|..+.++++..+++..+.++|++|++++...+..+.|+      .+++.++.|...++
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~------~~~~~V~tdl~~~l  106 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR------VHIDVVRTDLLSGL  106 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC------CccceeehhHHhhh
Confidence            5679999999999999999999888999999999999999999998876      44777777766554

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.02  E-value=5e-09  Score=61.06  Aligned_cols=66  Identities=17%  Similarity=0.149  Sum_probs=49.7

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCc--------eEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNG--------EVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~--------~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++..++|-.||+|.+.+..+.......        +++|.|+++.+++.+++|++..+    ....+.+...|+.+
T Consensus        26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag----~~~~i~~~~~D~~~   99 (179)
T PF01170_consen   26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG----VEDYIDFIQWDARE   99 (179)
T ss_dssp             --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-----CGGEEEEE--GGG
T ss_pred             CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc----cCCceEEEecchhh
Confidence            46778999999999999999877753322        38999999999999999999887    56788999988775

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.02  E-value=1.9e-09  Score=69.22  Aligned_cols=71  Identities=23%  Similarity=0.163  Sum_probs=58.8

Q ss_pred             HHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023           9 LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus         9 ~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ++..... +++|||+.|-||.++++.+....  .+|+++|+|..+++.|++|++.|+   ....++.|+++|+.+.+
T Consensus       211 ~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg---~~~~~~~~i~~Dvf~~l  281 (393)
T COG1092         211 ALGELAA-GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNG---LDGDRHRFIVGDVFKWL  281 (393)
T ss_pred             HHhhhcc-CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcC---CCccceeeehhhHHHHH
Confidence            3333344 89999999999999999988642  389999999999999999999998   22467899999998754

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.01  E-value=1.3e-09  Score=64.01  Aligned_cols=60  Identities=18%  Similarity=0.178  Sum_probs=46.4

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      -.+++|+|||.|.++..++.+-   .+++++|+++.+++.|+++...       ..+++|+++|+.+..|
T Consensus        44 y~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~-------~~~V~~~~~dvp~~~P  103 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG-------LPHVEWIQADVPEFWP  103 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT---
T ss_pred             cceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC-------CCCeEEEECcCCCCCC
Confidence            3589999999999999999874   3799999999999999999876       3589999999887665

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PHA03412 putative methyltransferase; Provisional

Probab=99.00  E-value=3.5e-09  Score=63.96  Aligned_cols=46  Identities=20%  Similarity=0.290  Sum_probs=39.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhh
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG--SNGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~--~~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      .+.+|||+|||+|.+++.+++...  +..+++++|+++.+++.|+++.
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~   96 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV   96 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc
Confidence            467999999999999999988642  3568999999999999999875

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.99  E-value=4e-09  Score=58.97  Aligned_cols=57  Identities=23%  Similarity=0.298  Sum_probs=46.8

Q ss_pred             eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023          19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG   81 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (88)
                      .++|+|||.|..+..+++.. +..+++++|.++.+.+.++++++.++     ..++++++..+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~-----~~~v~~~~~al   57 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNN-----LPNVVLLNAAV   57 (143)
T ss_pred             CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEEeee
Confidence            48999999999999998885 66799999999999999999998876     33455554443

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG2915|consensus

Probab=98.98  E-value=8.5e-09  Score=63.22  Aligned_cols=73  Identities=21%  Similarity=0.274  Sum_probs=65.0

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++..+.  +.|+.+|+|-|+|.|.++-++++..+|.++++..|+.+...+.|.+.++.++    ..+++++...|+-.
T Consensus        96 ~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg----i~~~vt~~hrDVc~  168 (314)
T KOG2915|consen   96 MILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG----IGDNVTVTHRDVCG  168 (314)
T ss_pred             HHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC----CCcceEEEEeeccc
Confidence            3444554  7899999999999999999999999999999999999999999999999988    78899999888754

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.98  E-value=3.1e-09  Score=65.27  Aligned_cols=46  Identities=15%  Similarity=0.254  Sum_probs=36.4

Q ss_pred             CCCeEEEecCCCCh----HHHHHHHHhCC----CceEEEEeCCHHHHHHHHHhh
Q psy8023          16 PGAKVLDIGSGSGY----LTACFADLVGS----NGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus        16 ~~~~vlD~g~G~G~----~~~~l~~~~~~----~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      ++.+|||+|||+|.    +++.+++..++    +.+++|+|+|+.+++.|++.+
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~  152 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI  152 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence            45699999999997    44555555432    468999999999999999875

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.97  E-value=2.3e-09  Score=62.72  Aligned_cols=40  Identities=40%  Similarity=0.676  Sum_probs=35.0

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHH
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEV   53 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~   53 (88)
                      ++++.+|||+|||+|.++..++....+.++++++|+++.+
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~   69 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK   69 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence            4678899999999999999999887566789999999853

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.96  E-value=3.3e-09  Score=63.84  Aligned_cols=62  Identities=16%  Similarity=0.112  Sum_probs=56.5

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ..+||+|||.|.+.+.+|+.. |+..++|+|+....+..+.+.+.+.+     ..|+.+++.|+.+.+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~-----l~Nlri~~~DA~~~l  111 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELG-----LKNLRLLCGDAVEVL  111 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcC-----CCcEEEEcCCHHHHH
Confidence            589999999999999999996 88899999999999999999999877     559999999998754

>PLN02366 spermidine synthase

Probab=98.96  E-value=1.3e-08  Score=63.78  Aligned_cols=67  Identities=18%  Similarity=0.170  Sum_probs=53.8

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++||++|||.|..+..+++. ++..+++.+|+++.+++.+++.+...+. .....+++++.+|+.+
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~-~~~dpRv~vi~~Da~~  156 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAV-GFDDPRVNLHIGDGVE  156 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhcc-ccCCCceEEEEChHHH
Confidence            56789999999999999999876 3456899999999999999999865321 1235689999999754

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.96  E-value=3.9e-09  Score=61.74  Aligned_cols=75  Identities=21%  Similarity=0.167  Sum_probs=55.9

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .+...+....-++.++||+.||+|.+++..+.+.  -.+|+.+|.++.+++..++|++..+    ...+++++..|+...
T Consensus        31 alFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~----~~~~~~v~~~d~~~~  104 (183)
T PF03602_consen   31 ALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLG----LEDKIRVIKGDAFKF  104 (183)
T ss_dssp             HHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-----GGGEEEEESSHHHH
T ss_pred             HHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhC----CCcceeeeccCHHHH
Confidence            3445555331468899999999999999888875  3489999999999999999999877    455789999997654


Q ss_pred             c
Q psy8023          85 Y   85 (88)
Q Consensus        85 ~   85 (88)
                      +
T Consensus       105 l  105 (183)
T PF03602_consen  105 L  105 (183)
T ss_dssp             H
T ss_pred             H
Confidence            3

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK03612 spermidine synthase; Provisional

Probab=98.95  E-value=9.5e-09  Score=68.30  Aligned_cols=69  Identities=17%  Similarity=0.154  Sum_probs=52.3

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh--hhcCCCCCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI--QQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +++++|||+|||+|..+..++++ ++..+++++|+++++++.++++.  ...+.......+++++.+|+.+.
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~  366 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW  366 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH
Confidence            45679999999999999998875 23379999999999999999953  22111111246889999998764

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.94  E-value=8.6e-09  Score=61.27  Aligned_cols=62  Identities=26%  Similarity=0.303  Sum_probs=52.5

Q ss_pred             EEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          20 VLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        20 vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      |+|+||-.|++++.+.+.. .-.+++++|+++..++.|++++..++    ...++++..+|..+.++
T Consensus         1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~----l~~~i~~rlgdGL~~l~   62 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYG----LEDRIEVRLGDGLEVLK   62 (205)
T ss_dssp             EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-SGGGG--
T ss_pred             CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcC----CcccEEEEECCcccccC
Confidence            6899999999999999984 56689999999999999999999988    77899999999887653

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG3420|consensus

Probab=98.94  E-value=9e-10  Score=62.02  Aligned_cols=71  Identities=21%  Similarity=0.292  Sum_probs=53.8

Q ss_pred             HHHHHhhcC--CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           6 ALELLKDNL--KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         6 ~~~~~~~~~--~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++..+.+-.  -+++.++|+|||+|-+++..+..  .+..++|+|+++++++.+++|.....      -++++++.|+.+
T Consensus        36 M~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfE------vqidlLqcdild  107 (185)
T KOG3420|consen   36 MLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFE------VQIDLLQCDILD  107 (185)
T ss_pred             HHHHHHhhhccccCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhh------hhhheeeeeccc
Confidence            344444332  36789999999999998655543  45689999999999999999998754      456888888776


Q ss_pred             c
Q psy8023          84 Q   84 (88)
Q Consensus        84 ~   84 (88)
                      .
T Consensus       108 l  108 (185)
T KOG3420|consen  108 L  108 (185)
T ss_pred             h
Confidence            4

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.93  E-value=7.4e-09  Score=67.92  Aligned_cols=58  Identities=22%  Similarity=0.299  Sum_probs=46.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++.+|||+|||+|.++..+++..   .+++++|+++.+++.+++...       ...+++++++|+.+
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~-------~~~~i~~~~~d~~~   94 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESING-------HYKNVKFMCADVTS   94 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhc-------cCCceEEEEecccc
Confidence            56799999999999999999874   379999999999988765322       13578888888753

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.93  E-value=9.5e-09  Score=53.33  Aligned_cols=59  Identities=27%  Similarity=0.433  Sum_probs=46.8

Q ss_pred             eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +++|+|||.|..+..++.  .+..+++++|+++..++.+++......     ..++++...|..+.
T Consensus         1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~   59 (107)
T cd02440           1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALL-----ADNVEVLKGDAEEL   59 (107)
T ss_pred             CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhccc-----ccceEEEEcChhhh
Confidence            489999999999999888  256799999999999999986444333     46677888777654

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>KOG0820|consensus

Probab=98.93  E-value=1.2e-08  Score=62.54  Aligned_cols=63  Identities=29%  Similarity=0.342  Sum_probs=55.8

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.+...|||+|.|||.++..+.+..   .+|+++|+++.++....+++....    .....+++.+|..+
T Consensus        56 ~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp----~~~kLqV~~gD~lK  118 (315)
T KOG0820|consen   56 LKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTP----KSGKLQVLHGDFLK  118 (315)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCC----ccceeeEEeccccc
Confidence            5677899999999999999999984   369999999999999999998765    56789999999876

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.92  E-value=5.9e-09  Score=66.98  Aligned_cols=61  Identities=20%  Similarity=0.190  Sum_probs=52.4

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|++.++     ..++++.++|+.+
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~-----~~~~~v~~~Da~~  118 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNG-----LENEKVFNKDANA  118 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhC-----CCceEEEhhhHHH
Confidence            36899999999999999988753 4589999999999999999999887     4567788888754

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.92  E-value=1.2e-08  Score=60.85  Aligned_cols=60  Identities=25%  Similarity=0.374  Sum_probs=48.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+.+|||+|||+|.++..+++..   .+++++|.++.+++.++++....+     ..++++..+|+.+
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~  104 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDP-----LLKIEYRCTSVED  104 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEeCCHHH
Confidence            36799999999999998887753   369999999999999999887655     2356777776543

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.91  E-value=1.5e-08  Score=57.26  Aligned_cols=49  Identities=41%  Similarity=0.629  Sum_probs=38.6

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHH
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF   56 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~   56 (88)
                      ..+..+.....++.+|||+|||.|.++..+.+.   +.+++++|+++.+++.
T Consensus        11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~   59 (161)
T PF13489_consen   11 DLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK   59 (161)
T ss_dssp             HHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH
T ss_pred             HHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh
Confidence            344444433567889999999999999999665   3389999999999887

...

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.91  E-value=2.3e-08  Score=62.46  Aligned_cols=73  Identities=15%  Similarity=0.234  Sum_probs=60.1

Q ss_pred             CcHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCC
Q psy8023           1 MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGE   80 (88)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d   80 (88)
                      +|..++++.+.  ..++..++|..+|.|+.+..+++..+ +++|+|+|.++.+++.+++++..+.      .++.+++++
T Consensus         7 Vll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~~------~R~~~i~~n   77 (305)
T TIGR00006         7 VLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDFE------GRVVLIHDN   77 (305)
T ss_pred             hhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhcC------CcEEEEeCC
Confidence            46677777776  56778999999999999999999874 5899999999999999999887543      567777776


Q ss_pred             cc
Q psy8023          81 GD   82 (88)
Q Consensus        81 ~~   82 (88)
                      -.
T Consensus        78 F~   79 (305)
T TIGR00006        78 FA   79 (305)
T ss_pred             HH
Confidence            44

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.89  E-value=9.7e-09  Score=64.90  Aligned_cols=66  Identities=15%  Similarity=0.088  Sum_probs=46.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCC-----CCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPEL-----LPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~d~~~   83 (88)
                      ++.+|||+|||.|+....+...  .-.+++|+|++.+.++.|+++.+......     .......++.+|...
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~  132 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFS  132 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCC
T ss_pred             CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecccccc
Confidence            6789999999999998888876  35689999999999999999994322110     012356678887764

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.85  E-value=4e-08  Score=64.32  Aligned_cols=64  Identities=23%  Similarity=0.208  Sum_probs=50.5

Q ss_pred             CCeEEEecCCCChHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLV---GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +..|+|+|||+|.++...++..   +...+|+++|.++.++...++.++.++    ..++|+++.+|+++.
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~----w~~~V~vi~~d~r~v  253 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG----WGDKVTVIHGDMREV  253 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT----TTTTEEEEES-TTTS
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC----CCCeEEEEeCcccCC
Confidence            5689999999999987776542   235689999999999888888877777    668999999999873

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.85  E-value=2.9e-08  Score=60.92  Aligned_cols=61  Identities=30%  Similarity=0.328  Sum_probs=52.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ..++..|+|+|+|.|.++..+++..   .+++++|+++.+++..++.+..       ..+++++.+|+.+.
T Consensus        28 ~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~-------~~~~~vi~~D~l~~   88 (262)
T PF00398_consen   28 LSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFAS-------NPNVEVINGDFLKW   88 (262)
T ss_dssp             CGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTT-------CSSEEEEES-TTTS
T ss_pred             CCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhh-------cccceeeecchhcc
Confidence            3477899999999999999999985   4799999999999999998773       46899999998863

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>TIGR00417 speE spermidine synthase

Probab=98.85  E-value=4.3e-08  Score=60.38  Aligned_cols=67  Identities=18%  Similarity=0.155  Sum_probs=50.8

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.+.+||++|||+|..+..+++.. +..+++++|+++.+++.+++++..... .....+++++.+|+.+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~-~~~~~~v~i~~~D~~~  137 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAG-SYDDPRVDLQIDDGFK  137 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcc-cccCCceEEEECchHH
Confidence            345699999999999998888764 456899999999999999998765431 1123567777777644

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.84  E-value=3.4e-09  Score=63.70  Aligned_cols=40  Identities=25%  Similarity=0.528  Sum_probs=36.3

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      .+++|+|||||..+..+.....   +++|+|+|+.|+++|.++
T Consensus       127 ~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eK  166 (287)
T COG4976         127 RRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEK  166 (287)
T ss_pred             ceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhc
Confidence            5899999999999999988864   599999999999999876

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.83  E-value=3.5e-08  Score=61.27  Aligned_cols=66  Identities=20%  Similarity=0.117  Sum_probs=52.7

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      .++++|||+.|-||.+++..+...  -.+|+.+|.|..+++.+++|+..|+   ....+++++.+|+.+.+
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg---~~~~~~~~~~~Dvf~~l  187 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNG---LDLDRHRFIQGDVFKFL  187 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT----CCTCEEEEES-HHHHH
T ss_pred             cCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcC---CCccceEEEecCHHHHH
Confidence            468899999999999999877653  3479999999999999999999988   22468999999987643

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.81  E-value=3.6e-08  Score=55.38  Aligned_cols=65  Identities=23%  Similarity=0.351  Sum_probs=48.7

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLV---GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG   81 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (88)
                      .+...|+|+|||.|+++..++..+   .++.+|+++|.++..++.+.++.+.....  ...+.++..++.
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~   91 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSD--LEKRLSFIQGDI   91 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcch--hhccchhhccch
Confidence            456799999999999999999943   25779999999999999998888765411  123445554443

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.80  E-value=5.5e-08  Score=58.60  Aligned_cols=67  Identities=13%  Similarity=-0.047  Sum_probs=49.7

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc------CCC-CCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG------NPE-LLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~------~~~-~~~~~~~~~~~~d~~~~   84 (88)
                      .++.+||+.|||.|.....++.+   +.+|+|+|+|+.+++.+.+.....      +.. .....++++.++|..+.
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l  115 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNL  115 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCC
Confidence            45679999999999999999997   446999999999999886632110      000 01245789999998864

>KOG2730|consensus

Probab=98.79  E-value=1.6e-08  Score=60.47  Aligned_cols=61  Identities=18%  Similarity=0.024  Sum_probs=54.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ...+|+|..||.|+.++.++.+..   .|+++|++|.-+..|++|++-+|    ..++++|++||..+
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYG----I~~rItFI~GD~ld  154 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYG----VPDRITFICGDFLD  154 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeec----CCceeEEEechHHH
Confidence            456899999999999999888753   59999999999999999999999    66799999999875

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.79  E-value=3.1e-08  Score=57.42  Aligned_cols=50  Identities=28%  Similarity=0.434  Sum_probs=39.6

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      ..++.+|||+|||+|..++.++... ...+|+.+|.++ .++.++.|++.|+
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~   92 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNG   92 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT-
T ss_pred             hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhcc
Confidence            4567899999999999999999984 466899999999 9999999998865

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.79  E-value=6.8e-08  Score=58.05  Aligned_cols=59  Identities=24%  Similarity=0.464  Sum_probs=46.8

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      .++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++++...+      .++++...|..
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~------~~~~~~~~~~~  105 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESG------LKIDYRQTTAE  105 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcC------CceEEEecCHH
Confidence            35779999999999999888875   3579999999999999999887654      14556655544

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.78  E-value=5e-08  Score=58.20  Aligned_cols=77  Identities=23%  Similarity=0.381  Sum_probs=67.2

Q ss_pred             HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..-+..+.++++.+.+++|+||-.|+++..+.+.. +...+++.|+++..++.|.+++..++    ...++++..+|...
T Consensus         4 ~~RL~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~-~~~~~va~eV~~gpl~~a~~~v~~~~----l~~~i~vr~~dgl~   78 (226)
T COG2384           4 SKRLTTVANLVKQGARIADIGSDHAYLPIYLVKNN-PASTAVAGEVVPGPLESAIRNVKKNN----LSERIDVRLGDGLA   78 (226)
T ss_pred             hHHHHHHHHHHHcCCceeeccCchhHhHHHHHhcC-CcceEEEeecccCHHHHHHHHHHhcC----CcceEEEeccCCcc
Confidence            44566667777888889999999999999999985 77899999999999999999999988    78899999999876


Q ss_pred             cc
Q psy8023          84 QY   85 (88)
Q Consensus        84 ~~   85 (88)
                      .+
T Consensus        79 ~l   80 (226)
T COG2384          79 VL   80 (226)
T ss_pred             cc
Confidence            54

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.78  E-value=1.5e-07  Score=61.99  Aligned_cols=65  Identities=22%  Similarity=0.280  Sum_probs=58.8

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|+|.|+-+..++...+..+.+++.|+++..++..++++.+.+     ..++.+...|+.+
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G-----~~nv~v~~~D~~~  175 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG-----VSNVALTHFDGRV  175 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeCchhh
Confidence            4688899999999999999999998777899999999999999999999988     6778888888764

>KOG1500|consensus

Probab=98.77  E-value=4.2e-08  Score=62.16  Aligned_cols=61  Identities=26%  Similarity=0.267  Sum_probs=53.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.|+|+|||.|.++.+.++..  ..+|+++|.|+ |.+.|++.++.|.    ..+++.++.|-+++
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS~-MAqyA~~Lv~~N~----~~~rItVI~GKiEd  237 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEASE-MAQYARKLVASNN----LADRITVIPGKIED  237 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhC--cceEEEEehhH-HHHHHHHHHhcCC----ccceEEEccCcccc
Confidence            57789999999999999988875  45899999988 8999999998887    78899999988776

>PRK04148 hypothetical protein; Provisional

Probab=98.73  E-value=9.8e-08  Score=53.21  Aligned_cols=42  Identities=10%  Similarity=0.222  Sum_probs=34.3

Q ss_pred             CCCeEEEecCCCCh-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          16 PGAKVLDIGSGSGY-LTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        16 ~~~~vlD~g~G~G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      ++.+++|+|||+|. ++..+.+.   +.+|+++|+++.+++.++++
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~   58 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL   58 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh
Confidence            45789999999997 77666653   45899999999988888775

>PLN02823 spermine synthase

Probab=98.73  E-value=1.5e-07  Score=59.74  Aligned_cols=69  Identities=13%  Similarity=0.185  Sum_probs=54.0

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      +..++||.+|+|.|..+..+++.. +..+++.+|+++.+++.+++.+..++.. ....+++++.+|+.+.+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~-~~dprv~v~~~Da~~~L  170 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREA-FCDKRLELIINDARAEL  170 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhccccccc-ccCCceEEEEChhHHHH
Confidence            455789999999999998888763 4568999999999999999998654311 23568888888877643

>KOG1663|consensus

Probab=98.72  E-value=1.5e-07  Score=56.45  Aligned_cols=67  Identities=16%  Similarity=0.198  Sum_probs=61.3

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      -..++++|+|.-||+-++.++..++++++|+++|+++...+.+.+.++..+    ...+++++++++.+.+
T Consensus        72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag----v~~KI~~i~g~a~esL  138 (237)
T KOG1663|consen   72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG----VDHKITFIEGPALESL  138 (237)
T ss_pred             hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc----ccceeeeeecchhhhH
Confidence            356799999999999999999999999999999999999999999999888    7789999999988765

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.69  E-value=1.9e-07  Score=54.69  Aligned_cols=72  Identities=19%  Similarity=0.118  Sum_probs=58.4

Q ss_pred             HHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         6 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +..++....-++.++||+.+|+|.+++..+.+.  -.+++.+|.+..++...++|++..+    ...+.+++..|+..
T Consensus        33 lFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~----~~~~~~~~~~da~~  104 (187)
T COG0742          33 LFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALG----LEGEARVLRNDALR  104 (187)
T ss_pred             HHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhC----CccceEEEeecHHH
Confidence            444444312467899999999999999998885  3489999999999999999998876    56788899888874

>KOG3010|consensus

Probab=98.68  E-value=5.7e-08  Score=58.69  Aligned_cols=42  Identities=21%  Similarity=0.308  Sum_probs=37.1

Q ss_pred             eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhh
Q psy8023          19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ   63 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~   63 (88)
                      .++|+|||+|..++.++.++.   +|+|+|+|+.|++.+++..+.
T Consensus        36 ~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~   77 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPV   77 (261)
T ss_pred             eEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCc
Confidence            789999999988888888874   499999999999999887643

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.68  E-value=1.9e-07  Score=56.46  Aligned_cols=60  Identities=25%  Similarity=0.265  Sum_probs=49.0

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      ..+..+|+|+|+|.|.++..+++.+ |+.+++..|. |+.++.+++           .++++++.+|..+.+|
T Consensus        98 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-----------~~rv~~~~gd~f~~~P  157 (241)
T PF00891_consen   98 FSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-----------ADRVEFVPGDFFDPLP  157 (241)
T ss_dssp             TTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-----------TTTEEEEES-TTTCCS
T ss_pred             ccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-----------ccccccccccHHhhhc
Confidence            3455789999999999999999998 8899999999 778888887           2579999999987776

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG2899|consensus

Probab=98.68  E-value=9.5e-08  Score=57.95  Aligned_cols=50  Identities=28%  Similarity=0.379  Sum_probs=43.8

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      ..+..+||+||-.|.+++.+++.++ .-.+.|+||++..++.|+++++...
T Consensus        57 f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~  106 (288)
T KOG2899|consen   57 FEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPC  106 (288)
T ss_pred             cCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccc
Confidence            4567899999999999999999984 4569999999999999999987644

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.67  E-value=2.7e-07  Score=55.42  Aligned_cols=67  Identities=24%  Similarity=0.285  Sum_probs=47.9

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhh-cCCCC------CCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ-GNPEL------LPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~-~~~~~------~~~~~~~~~~~d~~~   83 (88)
                      ..++.+||..|||.|.....++.+   +.+|+|+|+|+.+++.+.+.... .....      ....++++.++|..+
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~  108 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFE  108 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTT
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccccc
Confidence            456679999999999999999986   45899999999999998433221 11000      124578999999876

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.66  E-value=9.8e-08  Score=57.62  Aligned_cols=40  Identities=30%  Similarity=0.298  Sum_probs=34.0

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHH
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF   56 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~   56 (88)
                      .++.++||+|||+|.++..+++..  ..+|+++|+++.++..
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~  113 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHH
Confidence            367799999999999999999872  4589999999977654

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG1975|consensus

Probab=98.66  E-value=4.3e-08  Score=61.53  Aligned_cols=68  Identities=15%  Similarity=0.090  Sum_probs=53.7

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCC-CCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPEL-LPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~d~~~   83 (88)
                      .+++..++|+|||.|+..+.+-+..  -.+++|+||.+.+++.|+++.+.+.... -....+.|+.+|.+.
T Consensus       115 ~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~  183 (389)
T KOG1975|consen  115 TKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK  183 (389)
T ss_pred             hccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence            4677889999999999999888764  4589999999999999999997655111 122457899998775

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.64  E-value=1.7e-07  Score=59.33  Aligned_cols=62  Identities=15%  Similarity=0.111  Sum_probs=50.7

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeC-Cccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTG-EGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~   83 (88)
                      +.+|..|||-.||||++.+...-.   +.+++|.|++..|++-++.|++.++     ...+.+... |+++
T Consensus       195 v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~-----i~~~~~~~~~Da~~  257 (347)
T COG1041         195 VKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYG-----IEDYPVLKVLDATN  257 (347)
T ss_pred             cccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhC-----cCceeEEEeccccc
Confidence            678889999999999998886665   5689999999999999999999987     445555554 5543

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.64  E-value=1.4e-07  Score=60.56  Aligned_cols=62  Identities=18%  Similarity=0.180  Sum_probs=53.0

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .+|||+.||+|..++.++...+.-.+|+++|+++.+++.+++|++.++     ..++++.++|+...
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-----~~~~~v~~~Da~~~  107 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS-----VENIEVPNEDAANV  107 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEchhHHHH
Confidence            589999999999999999974223589999999999999999999887     45788888887653

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.63  E-value=3.9e-07  Score=56.89  Aligned_cols=59  Identities=19%  Similarity=0.309  Sum_probs=40.9

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc-CCCCCCCcceEEeeCC
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG-NPELLPNIKFEPQTGE   80 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~d   80 (88)
                      .-++||+|||...+=..+.... .+.+++|+|+++.+++.|++++..| +    ...+|+++...
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~----L~~~I~l~~~~  162 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPN----LESRIELRKQK  162 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-----TTTEEEEE--
T ss_pred             ceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccc----cccceEEEEcC
Confidence            4579999999887644444443 3789999999999999999999998 6    56788887653

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.62  E-value=4.4e-07  Score=53.19  Aligned_cols=59  Identities=29%  Similarity=0.326  Sum_probs=52.4

Q ss_pred             eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++|+|+|.|.-++.++-.. |+.+++.+|....-+.+.++.....+     ..+++++++.+++
T Consensus        51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~-----L~nv~v~~~R~E~  109 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELG-----LSNVEVINGRAEE  109 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT------SSEEEEES-HHH
T ss_pred             eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhC-----CCCEEEEEeeecc
Confidence            89999999999999999987 88999999999999999999999888     6789999998876

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.60  E-value=6.8e-07  Score=61.45  Aligned_cols=65  Identities=18%  Similarity=0.154  Sum_probs=53.3

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhC-----------------------------------------CCceEEEEeCCHHH
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVG-----------------------------------------SNGEVTAVELIPEV   53 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~-----------------------------------------~~~~v~~~D~~~~~   53 (88)
                      .++..++|.+||+|.+.+..+....                                         ...+++|+|+++.+
T Consensus       189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a  268 (702)
T PRK11783        189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV  268 (702)
T ss_pred             CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence            4577999999999999988765310                                         12379999999999


Q ss_pred             HHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          54 LQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        54 ~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++.|++|+..++    ....+++..+|..+
T Consensus       269 v~~A~~N~~~~g----~~~~i~~~~~D~~~  294 (702)
T PRK11783        269 IQAARKNARRAG----VAELITFEVKDVAD  294 (702)
T ss_pred             HHHHHHHHHHcC----CCcceEEEeCChhh
Confidence            999999999988    55678999998765

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.60  E-value=3e-07  Score=61.12  Aligned_cols=61  Identities=18%  Similarity=0.060  Sum_probs=53.5

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      .+..+||+|||.|.+...++... |+..++|+|+....+..+.+.....+     ..|+.++..|+.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~-----l~N~~~~~~~~~  407 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQN-----ITNFLLFPNNLD  407 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcC-----CCeEEEEcCCHH
Confidence            46789999999999999999996 78899999999999999888887766     678888888764

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.58  E-value=5.3e-07  Score=53.69  Aligned_cols=76  Identities=21%  Similarity=0.229  Sum_probs=45.6

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC---CCC-CCCcceEEeeCC
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN---PEL-LPNIKFEPQTGE   80 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~---~~~-~~~~~~~~~~~d   80 (88)
                      .+++.+.  +.++..++|+|||.|......+-.. +-.+.+|+|+.+...+.|++..+...   ..+ ....++++..+|
T Consensus        33 ~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd  109 (205)
T PF08123_consen   33 KILDELN--LTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD  109 (205)
T ss_dssp             HHHHHTT----TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred             HHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence            3444443  5678899999999999998888776 34459999999988877765442211   000 124678888888


Q ss_pred             ccc
Q psy8023          81 GDI   83 (88)
Q Consensus        81 ~~~   83 (88)
                      ..+
T Consensus       110 fl~  112 (205)
T PF08123_consen  110 FLD  112 (205)
T ss_dssp             TTT
T ss_pred             ccc
Confidence            764

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.57  E-value=2.2e-07  Score=54.64  Aligned_cols=58  Identities=24%  Similarity=0.394  Sum_probs=52.0

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..+.|+|+|+|.++...++.. .  +|+++|.+|.....|.+|++-.+     ..+++++.+|+..
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~A-~--rViAiE~dPk~a~~a~eN~~v~g-----~~n~evv~gDA~~   91 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHAA-E--RVIAIEKDPKRARLAEENLHVPG-----DVNWEVVVGDARD   91 (252)
T ss_pred             hceeeccCCcchHHHHHHhhh-c--eEEEEecCcHHHHHhhhcCCCCC-----CcceEEEeccccc
Confidence            689999999999999888874 3  69999999999999999998777     7899999999875

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=98.56  E-value=6.9e-07  Score=56.06  Aligned_cols=73  Identities=22%  Similarity=0.295  Sum_probs=55.8

Q ss_pred             CcHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCC
Q psy8023           1 MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGE   80 (88)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d   80 (88)
                      +|..++++.+.  ..++..++|..-|.|+.+..+++..+ +++++|+|.++.+++.+++++...      .+++.+++++
T Consensus         7 Vll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~-~~~li~~DrD~~a~~~a~~~l~~~------~~r~~~~~~~   77 (310)
T PF01795_consen    7 VLLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLP-NGRLIGIDRDPEALERAKERLKKF------DDRFIFIHGN   77 (310)
T ss_dssp             TTHHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-T-T-EEEEEES-HHHHHHHHCCTCCC------CTTEEEEES-
T ss_pred             ccHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCC-CCeEEEecCCHHHHHHHHHHHhhc------cceEEEEecc
Confidence            57788888887  66778999999999999999999984 499999999999999999988764      3678888776


Q ss_pred             cc
Q psy8023          81 GD   82 (88)
Q Consensus        81 ~~   82 (88)
                      -.
T Consensus        78 F~   79 (310)
T PF01795_consen   78 FS   79 (310)
T ss_dssp             GG
T ss_pred             HH
Confidence            43

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.55  E-value=1.6e-06  Score=53.86  Aligned_cols=66  Identities=24%  Similarity=0.385  Sum_probs=58.3

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ..++..|||+|++.|+-+..+++.....+++++.|+++.-+...+++.++.+     ..++.....|..+.
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g-----~~~v~~~~~D~~~~  148 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG-----VFNVIVINADARKL  148 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT------SSEEEEESHHHHH
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC-----CceEEEEeeccccc
Confidence            5678899999999999999999998778999999999999999999999988     77888887776653

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG4300|consensus

Probab=98.51  E-value=3.2e-07  Score=54.64  Aligned_cols=58  Identities=16%  Similarity=0.252  Sum_probs=45.7

Q ss_pred             eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceE-EeeCCccc
Q psy8023          19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFE-PQTGEGDI   83 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~d~~~   83 (88)
                      .+|++|||||..-.+.-.  .|..+|+++|.++.|-+.+.+.++++.     ..++. |+.++.++
T Consensus        79 ~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k-----~~~~~~fvva~ge~  137 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKK-----PLQVERFVVADGEN  137 (252)
T ss_pred             ceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhcc-----CcceEEEEeechhc
Confidence            589999999997433222  278899999999999999999998875     45565 88887654

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=98.49  E-value=2.2e-06  Score=53.48  Aligned_cols=73  Identities=15%  Similarity=0.221  Sum_probs=62.0

Q ss_pred             CcHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCC
Q psy8023           1 MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGE   80 (88)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d   80 (88)
                      +|..++++.+.  +.++...+|..-|.|+.+..+++.+++.++++++|-++.+++.|++....++      .++.+++++
T Consensus        10 VLl~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~------~r~~~v~~~   81 (314)
T COG0275          10 VLLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD------GRVTLVHGN   81 (314)
T ss_pred             hHHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC------CcEEEEeCc
Confidence            45677777777  5677899999999999999999999778899999999999999999998754      577777765


Q ss_pred             c
Q psy8023          81 G   81 (88)
Q Consensus        81 ~   81 (88)
                      -
T Consensus        82 F   82 (314)
T COG0275          82 F   82 (314)
T ss_pred             H
Confidence            3

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.48  E-value=1.9e-06  Score=53.89  Aligned_cols=39  Identities=26%  Similarity=0.371  Sum_probs=33.2

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHH
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF   56 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~   56 (88)
                      .+++|||+|||+|+.+..++...  ...|+|+|.+...+..
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~lf~~Q  153 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSPLFYLQ  153 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcC--CCEEEEECCChHHHHH
Confidence            68899999999999999999874  3479999999866544

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.47  E-value=2.2e-06  Score=54.09  Aligned_cols=77  Identities=16%  Similarity=0.219  Sum_probs=54.8

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhC---CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVG---SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG   81 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (88)
                      +....+...++++..++|+|||.|.-+..+++.+.   ...+++++|+|.++++.+.+++....   .+.-.+.-+++|-
T Consensus        65 ~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~---~p~l~v~~l~gdy  141 (319)
T TIGR03439        65 KHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN---FSHVRCAGLLGTY  141 (319)
T ss_pred             HHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc---CCCeEEEEEEecH
Confidence            34445555677788999999999998887777663   24679999999999999999988222   0123344467766


Q ss_pred             ccc
Q psy8023          82 DIQ   84 (88)
Q Consensus        82 ~~~   84 (88)
                      +++
T Consensus       142 ~~~  144 (319)
T TIGR03439       142 DDG  144 (319)
T ss_pred             HHH
Confidence            554

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.44  E-value=1.3e-06  Score=52.32  Aligned_cols=61  Identities=25%  Similarity=0.277  Sum_probs=53.8

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.+++|+|+|.|.-++.++-.. |+.+++.+|....-+.+.++.....+     ..|++++++.+++
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~eL~-----L~nv~i~~~RaE~  128 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKELG-----LENVEIVHGRAEE  128 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHHhC-----CCCeEEehhhHhh
Confidence            5799999999999999999665 77889999999999999999888877     7788888887765

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=98.44  E-value=1.6e-06  Score=52.84  Aligned_cols=74  Identities=14%  Similarity=0.173  Sum_probs=52.2

Q ss_pred             HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..+...+...+++..+|+|+|||.=-++..+.... ++..++|.||+..++++........+      .+.++...|...
T Consensus        93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~------~~~~~~v~Dl~~  165 (251)
T PF07091_consen   93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLG------VPHDARVRDLLS  165 (251)
T ss_dssp             HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-------CEEEEEE-TTT
T ss_pred             HHHHHHHHhcCCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhC------CCcceeEeeeec
Confidence            34555666566678899999999999999888764 67899999999999999999988765      334555556654


Q ss_pred             c
Q psy8023          84 Q   84 (88)
Q Consensus        84 ~   84 (88)
                      +
T Consensus       166 ~  166 (251)
T PF07091_consen  166 D  166 (251)
T ss_dssp             S
T ss_pred             c
Confidence            3

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.43  E-value=1.1e-06  Score=50.78  Aligned_cols=57  Identities=19%  Similarity=0.295  Sum_probs=45.9

Q ss_pred             HHHHHhhcC--CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023           6 ALELLKDNL--KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus         6 ~~~~~~~~~--~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      +.+.|.+.+  +++.-|+|+|.|+|-++.+++.+.-++..++++|.|++.....++.+.
T Consensus        36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p   94 (194)
T COG3963          36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP   94 (194)
T ss_pred             HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC
Confidence            334444433  456789999999999999999987788899999999998888877654

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.43  E-value=2.1e-06  Score=53.35  Aligned_cols=66  Identities=20%  Similarity=0.212  Sum_probs=56.2

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ++||-+|-|.|.++..+.+.. +..+++.+|+++..++.+++.+........ ..+++++.+|+.+.+
T Consensus        78 k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~Dg~~~v  143 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIIDDGVEFL  143 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEEeccHHHHH
Confidence            599999999999999999985 678999999999999999999987653333 578999999887643

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.42  E-value=1.6e-06  Score=52.93  Aligned_cols=69  Identities=22%  Similarity=0.247  Sum_probs=52.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      -++.++||-+|-|.|..+..+.+.. +..+++.+|+++..++.+++.+...... ....+++++.+|+...
T Consensus        74 ~~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~i~~~Dg~~~  142 (246)
T PF01564_consen   74 HPNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVRIIIGDGRKF  142 (246)
T ss_dssp             SSST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEEEEESTHHHH
T ss_pred             CCCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc-cCCCceEEEEhhhHHH
Confidence            3567899999999999999888764 5678999999999999999988653311 1246888888887653

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.40  E-value=2e-06  Score=53.83  Aligned_cols=66  Identities=21%  Similarity=0.300  Sum_probs=45.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHh------CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLV------GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~------~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      ..++.+|+|.+||+|.+...+.+.+      ....+++|+|+++.++..++-++..++   .......+..+|..
T Consensus        44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~---~~~~~~~i~~~d~l  115 (311)
T PF02384_consen   44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG---IDNSNINIIQGDSL  115 (311)
T ss_dssp             T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT---HHCBGCEEEES-TT
T ss_pred             ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc---cccccccccccccc
Confidence            3456689999999999999888753      256789999999999999988775544   01222346666654

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.38  E-value=1.1e-05  Score=50.33  Aligned_cols=65  Identities=12%  Similarity=0.058  Sum_probs=55.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGS-NGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ..-+|+|+.||.|..........+. ..++...|+++..++..++.++..+    ...-++|.++|+.+.
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g----L~~i~~f~~~dAfd~  200 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG----LEDIARFEQGDAFDR  200 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC----CccceEEEecCCCCH
Confidence            4459999999999998888887643 4689999999999999999999988    445559999999874

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.34  E-value=3.7e-06  Score=56.16  Aligned_cols=50  Identities=14%  Similarity=0.129  Sum_probs=41.5

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCC-------CceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGS-------NGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~-------~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      ...+|+|.|||+|.+...++.....       ..+++++|+++.+++.++.++...+
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~   87 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA   87 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence            3458999999999999999887621       2578999999999999999887654

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.30  E-value=1.4e-05  Score=51.17  Aligned_cols=64  Identities=25%  Similarity=0.323  Sum_probs=55.5

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGS-NGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      ..++.+|||++++-|+=+.++++.... ...|+++|.++.-++..++++++.+     ..++..++.|..
T Consensus       154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG-----~~nv~~~~~d~~  218 (355)
T COG0144         154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG-----VRNVIVVNKDAR  218 (355)
T ss_pred             CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC-----CCceEEEecccc
Confidence            567899999999999999999999854 3456999999999999999999998     666778777764

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.29  E-value=7.5e-06  Score=52.65  Aligned_cols=66  Identities=17%  Similarity=0.154  Sum_probs=54.9

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhC---C----------------------------Cc-------eEEEEeCCHHHHH
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVG---S----------------------------NG-------EVTAVELIPEVLQ   55 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~---~----------------------------~~-------~v~~~D~~~~~~~   55 (88)
                      ..++..++|--||+|.+.+..+-...   |                            ..       .++|+|+++.+++
T Consensus       189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~  268 (381)
T COG0116         189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE  268 (381)
T ss_pred             CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence            34557899999999999998776642   1                            11       3789999999999


Q ss_pred             HHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          56 FTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        56 ~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      -|+.|....+    ..+.++|..+|+..
T Consensus       269 ~Ak~NA~~AG----v~d~I~f~~~d~~~  292 (381)
T COG0116         269 GAKANARAAG----VGDLIEFKQADATD  292 (381)
T ss_pred             HHHHHHHhcC----CCceEEEEEcchhh
Confidence            9999999988    78899999999875

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.28  E-value=8.2e-06  Score=50.57  Aligned_cols=60  Identities=30%  Similarity=0.375  Sum_probs=45.8

Q ss_pred             HHHHHhhcCC--CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023           6 ALELLKDNLK--PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus         6 ~~~~~~~~~~--~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      ++..+....+  .+.+|||+|||.|.-.......++...+++++|.|+.+++.++..+....
T Consensus        21 vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~   82 (274)
T PF09243_consen   21 VLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP   82 (274)
T ss_pred             HHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc
Confidence            3444443332  35689999999999888877777656689999999999999999876543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG3115|consensus

Probab=98.26  E-value=3.7e-06  Score=50.01  Aligned_cols=69  Identities=16%  Similarity=0.070  Sum_probs=55.4

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCC--CCCCcceEEeeCCcccccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPE--LLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~d~~~~~~   86 (88)
                      .-.+.|+|||.|.+...++..+ |+.-+.|.||--...+..++++...+..  .....++.+...++..-+|
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp  131 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP  131 (249)
T ss_pred             cceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc
Confidence            3468999999999999999998 7888999999998888888888655422  1246788888888876554

>KOG2361|consensus

Probab=98.24  E-value=9.1e-07  Score=53.65  Aligned_cols=44  Identities=18%  Similarity=0.305  Sum_probs=39.0

Q ss_pred             eEEEecCCCChHHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHhhhh
Q psy8023          19 KVLDIGSGSGYLTACFADLVGSN--GEVTAVELIPEVLQFTHYNIQQ   63 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~~~~--~~v~~~D~~~~~~~~a~~~~~~   63 (88)
                      +||++|||.|.+...+.+-. ++  ..++++|.|+.+++..+++...
T Consensus        74 ~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~  119 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGY  119 (264)
T ss_pred             hheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhcccc
Confidence            79999999999999998875 44  7899999999999999887654

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.22  E-value=2.9e-05  Score=46.76  Aligned_cols=49  Identities=37%  Similarity=0.562  Sum_probs=39.7

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      +.++.+||-+|+++|.+..+++.-.++.+.|+++|.|+...+..-+..+
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~  119 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAK  119 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhc
Confidence            4688999999999999999999999889999999999976655544433

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PRK10742 putative methyltransferase; Provisional

Probab=98.21  E-value=1.6e-05  Score=48.64  Aligned_cols=69  Identities=16%  Similarity=0.169  Sum_probs=53.3

Q ss_pred             CCCCC--eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc-CCCCC-C--CcceEEeeCCccccc
Q psy8023          14 LKPGA--KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG-NPELL-P--NIKFEPQTGEGDIQY   85 (88)
Q Consensus        14 ~~~~~--~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~-~--~~~~~~~~~d~~~~~   85 (88)
                      +.++.  +|||..+|+|..++.++..   +++|+++|-++......++++.+. ...+. .  ..+++++.+|..+.+
T Consensus        84 lk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L  158 (250)
T PRK10742         84 IKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL  158 (250)
T ss_pred             CCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHH
Confidence            34554  8999999999999999987   557999999999999999998773 11111 1  267899999987643

>PRK11524 putative methyltransferase; Provisional

Probab=98.19  E-value=1.2e-05  Score=49.99  Aligned_cols=55  Identities=22%  Similarity=0.193  Sum_probs=43.5

Q ss_pred             HHHHHhhc-CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhh
Q psy8023           6 ALELLKDN-LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ   63 (88)
Q Consensus         6 ~~~~~~~~-~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~   63 (88)
                      +++.+... -.++..|||-.+|+|.++.+..+. +.  +.+|+|++++.++.|++++..
T Consensus       197 L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l-gR--~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        197 LLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS-GR--KFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc-CC--CEEEEeCCHHHHHHHHHHHHh
Confidence            34444332 368899999999999998876665 45  799999999999999999754

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.18  E-value=1.2e-05  Score=47.83  Aligned_cols=59  Identities=24%  Similarity=0.260  Sum_probs=47.7

Q ss_pred             HHHHHhhcCCCCCe-EEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023           6 ALELLKDNLKPGAK-VLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus         6 ~~~~~~~~~~~~~~-vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      +++.+...+++... |||+|||||..+.++++.+ |..+-.-.|.++......+.++...+
T Consensus        14 Il~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~   73 (204)
T PF06080_consen   14 ILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAG   73 (204)
T ss_pred             HHHHHHHHhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcC
Confidence            45555655666555 9999999999999999998 77889999999988877777776654

The function of this family is unknown.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.10  E-value=2.5e-05  Score=46.50  Aligned_cols=38  Identities=34%  Similarity=0.724  Sum_probs=35.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP   51 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~   51 (88)
                      +.++++|+|+|+..|+++..+++..++..+|+++|+.|
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p   80 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP   80 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence            46789999999999999999999998888899999988

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=98.09  E-value=3.1e-05  Score=45.94  Aligned_cols=43  Identities=28%  Similarity=0.374  Sum_probs=34.0

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      -.++..|||..||+|.++.+..+. ++  +.+|+|+++..++.|++
T Consensus       189 t~~gdiVlDpF~GSGTT~~aa~~l-~R--~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  189 TNPGDIVLDPFAGSGTTAVAAEEL-GR--RYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             S-TT-EEEETT-TTTHHHHHHHHT-T---EEEEEESSHHHHHHHHH
T ss_pred             hccceeeehhhhccChHHHHHHHc-CC--eEEEEeCCHHHHHHhcC
Confidence            367889999999999998886665 35  79999999999999875

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=98.00  E-value=6.1e-05  Score=45.28  Aligned_cols=61  Identities=20%  Similarity=0.201  Sum_probs=41.1

Q ss_pred             HHHHHHHhhcCC--CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhc
Q psy8023           4 ARALELLKDNLK--PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQG   64 (88)
Q Consensus         4 ~~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~   64 (88)
                      .++++....+..  .+-.++|-|||.|++.-.+.-... .-..+++.|+++.+++.|++|+...
T Consensus        37 sEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL  100 (246)
T PF11599_consen   37 SEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL  100 (246)
T ss_dssp             HHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence            345555544432  234899999999997766655432 2347999999999999999997543

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PRK00536 speE spermidine synthase; Provisional

Probab=97.98  E-value=8.6e-05  Score=45.86  Aligned_cols=48  Identities=15%  Similarity=-0.079  Sum_probs=41.9

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      +..++||-+|.|-|.....++++-   .+|+.+|+++.+++.+++.+....
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~~~  118 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYD---THVDFVQADEKILDSFISFFPHFH  118 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcC---CeeEEEECCHHHHHHHHHHCHHHH
Confidence            566899999999999999999983   289999999999999999776543

>PRK13699 putative methylase; Provisional

Probab=97.95  E-value=0.00011  Score=44.54  Aligned_cols=49  Identities=22%  Similarity=0.244  Sum_probs=41.4

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      -.++..|||-.||+|.++.+..+. +.  +++|+|++++..+.+.+++....
T Consensus       161 s~~g~~vlDpf~Gsgtt~~aa~~~-~r--~~~g~e~~~~y~~~~~~r~~~~~  209 (227)
T PRK13699        161 THPNAIVLDPFAGSGSTCVAALQS-GR--RYIGIELLEQYHRAGQQRLAAVQ  209 (227)
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHc-CC--CEEEEecCHHHHHHHHHHHHHHH
Confidence            467889999999999998887765 34  69999999999999999886543

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.93  E-value=0.0001  Score=45.56  Aligned_cols=61  Identities=20%  Similarity=0.127  Sum_probs=43.2

Q ss_pred             CeEEEecCCC--ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          18 AKVLDIGSGS--GYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        18 ~~vlD~g~G~--G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..+||+|||.  ....-.+++...|..+|+-+|.+|..+..++..+..+.     ..+..++.+|+.+
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-----~g~t~~v~aD~r~  132 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-----RGRTAYVQADLRD  132 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-----TSEEEEEE--TT-
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-----CccEEEEeCCCCC
Confidence            4799999994  34566788888899999999999999999999888755     4468999999886

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.93  E-value=5.8e-05  Score=46.89  Aligned_cols=63  Identities=17%  Similarity=0.162  Sum_probs=42.0

Q ss_pred             CCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh-hcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ-QGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.+|+=+||| .-..++.+++...++..++++|+++++++.+++.++ ..+    ...+++|+.+|..+
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~----L~~~m~f~~~d~~~  185 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG----LSKRMSFITADVLD  185 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H----H-SSEEEEES-GGG
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc----ccCCeEEEecchhc
Confidence            4599999999 666777777776677889999999999999999888 334    46789999999764

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.92  E-value=1.2e-05  Score=46.64  Aligned_cols=37  Identities=35%  Similarity=0.518  Sum_probs=31.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHH
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPE   52 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~   52 (88)
                      ++.+++|+||+.|+++..+.+..++..+|+|+|+.+.
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            3479999999999999999998656789999999875

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.92  E-value=1.4e-05  Score=47.23  Aligned_cols=59  Identities=25%  Similarity=0.302  Sum_probs=48.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      .+++|||+|+|.|..++..+...  -..+++.|+.+...+..+.|.+.|+      -.+.+...|..
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~ang------v~i~~~~~d~~  137 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANG------VSILFTHADLI  137 (218)
T ss_pred             ccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhcc------ceeEEeecccc
Confidence            47899999999999999988875  3479999999998999899888876      34556655543

>KOG1501|consensus

Probab=97.90  E-value=5.5e-05  Score=49.84  Aligned_cols=59  Identities=22%  Similarity=0.281  Sum_probs=49.7

Q ss_pred             eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .|||+|+|||.++.-..+..+.  .|+++|.-..|.+.|++...+++    ..+++.++..-.++
T Consensus        69 ~vLdigtGTGLLSmMAvragaD--~vtA~EvfkPM~d~arkI~~kng----~SdkI~vInkrSte  127 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGAD--SVTACEVFKPMVDLARKIMHKNG----MSDKINVINKRSTE  127 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCC--eEEeehhhchHHHHHHHHHhcCC----Cccceeeeccccce
Confidence            5899999999998887777533  69999999999999999999998    77888887765443

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.87  E-value=4.5e-05  Score=46.91  Aligned_cols=42  Identities=29%  Similarity=0.339  Sum_probs=35.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      ...++||+|+|-|..+..++..+..   |+++|.|+.|....+++
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~---v~aTE~S~~Mr~rL~~k  135 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKE---VYATEASPPMRWRLSKK  135 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcce---EEeecCCHHHHHHHHhC
Confidence            3458999999999999999998844   99999999997666553

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG1227|consensus

Probab=97.87  E-value=6.7e-06  Score=51.43  Aligned_cols=63  Identities=21%  Similarity=0.216  Sum_probs=50.2

Q ss_pred             CCCCeEEEecCCCChHHH-HHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTA-CFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~-~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..+..|+|+.+|.|+++. ++.+.-  -..|+++|++|.+++-.++++..|+    ..++..++.+|-+.
T Consensus       193 c~~eviVDLYAGIGYFTlpflV~ag--Ak~V~A~EwNp~svEaLrR~~~~N~----V~~r~~i~~gd~R~  256 (351)
T KOG1227|consen  193 CDGEVIVDLYAGIGYFTLPFLVTAG--AKTVFACEWNPWSVEALRRNAEANN----VMDRCRITEGDNRN  256 (351)
T ss_pred             cccchhhhhhcccceEEeehhhccC--ccEEEEEecCHHHHHHHHHHHHhcc----hHHHHHhhhccccc
Confidence            456789999999999999 555553  4589999999999999999998887    55666666666543

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.86  E-value=7.6e-05  Score=47.68  Aligned_cols=34  Identities=32%  Similarity=0.400  Sum_probs=29.7

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP   51 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~   51 (88)
                      .++++++|+||++|+++..+.+.   +.+|+++|..+
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~  243 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP  243 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh
Confidence            57889999999999999999987   34899999665

>KOG2078|consensus

Probab=97.84  E-value=1.9e-05  Score=51.51  Aligned_cols=69  Identities=23%  Similarity=0.227  Sum_probs=57.6

Q ss_pred             hhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          11 KDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        11 ~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      .....++..|.|+.||.|-+.+..+..   +++|++-|.++++++..+.+++.+.   ....+++.+..|+.+.+
T Consensus       244 sg~fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNk---v~~~~iei~Nmda~~Fl  312 (495)
T KOG2078|consen  244 SGLFKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNK---VDPSAIEIFNMDAKDFL  312 (495)
T ss_pred             hhccCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccc---cchhheeeecccHHHHh
Confidence            335678899999999999999998885   5899999999999999999999876   22345899999887654

>PHA01634 hypothetical protein

Probab=97.81  E-value=0.0001  Score=41.06  Aligned_cols=48  Identities=13%  Similarity=-0.101  Sum_probs=41.9

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      .+++|+|+|.+.|..++.++-..  -.+|+++|.++...+..+++.+.+.
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nn   75 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFN   75 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhhe
Confidence            57899999999999999998875  3489999999999999999887654

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.80  E-value=9.6e-06  Score=43.19  Aligned_cols=60  Identities=25%  Similarity=0.314  Sum_probs=17.1

Q ss_pred             EEecCCCChHHHHHHHHhCCCc--eEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          21 LDIGSGSGYLTACFADLVGSNG--EVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        21 lD~g~G~G~~~~~l~~~~~~~~--~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ||+|+..|..+..+++...+..  +++++|..+. .+.+++.+++.+    ...+++++.+|..+.+
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~----~~~~~~~~~g~s~~~l   62 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG----LSDRVEFIQGDSPDFL   62 (106)
T ss_dssp             --------------------------EEEESS-------------GG----G-BTEEEEES-THHHH
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcC----CCCeEEEEEcCcHHHH
Confidence            6899999999999998875554  7999999996 444444444433    4567999999986643

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.76  E-value=0.00019  Score=42.84  Aligned_cols=48  Identities=33%  Similarity=0.515  Sum_probs=40.3

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      +.++.+||-+|+.+|.+..+++.-.+ .+.++++|.|+...+.......
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~  121 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAE  121 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHH
Confidence            46889999999999999999999874 7899999999977655544443

>KOG1122|consensus

Probab=97.75  E-value=0.00018  Score=47.02  Aligned_cols=64  Identities=20%  Similarity=0.240  Sum_probs=58.0

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      .+++.+|||+++..|+-+.+++...+..+.+++.|.+...+.....++.+++     ..+..+.+.|..
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG-----v~ntiv~n~D~~  302 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG-----VTNTIVSNYDGR  302 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC-----CCceEEEccCcc
Confidence            4678999999999999999999999888999999999999999999999998     677777887775

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.74  E-value=0.00012  Score=47.34  Aligned_cols=70  Identities=14%  Similarity=0.206  Sum_probs=55.8

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh--hhhcCCCCCCCcceEEeeCCccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN--IQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      +...++|-+|.|-|.-...+.++ +.-.+++-+|++|.|++.++++  .+..+..++...+++++..|+.+++
T Consensus       288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wl  359 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWL  359 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHH
Confidence            34468999999999988888887 3467999999999999999954  3444455566789999999998754

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=97.69  E-value=2.7e-05  Score=47.40  Aligned_cols=64  Identities=28%  Similarity=0.291  Sum_probs=49.3

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..+.+|||.|.|.|++++..+++.  -.+|+.+|.+|..++.|.-|--..+   .....++++.+|+.+
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~rG--A~~VitvEkdp~VLeLa~lNPwSr~---l~~~~i~iilGD~~e  196 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALERG--AIHVITVEKDPNVLELAKLNPWSRE---LFEIAIKIILGDAYE  196 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHcC--CcEEEEEeeCCCeEEeeccCCCCcc---ccccccEEecccHHH
Confidence            468899999999999999988874  2389999999999988876532111   123468999999876

>KOG4589|consensus

Probab=97.59  E-value=0.00019  Score=42.47  Aligned_cols=37  Identities=35%  Similarity=0.566  Sum_probs=33.6

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCC
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELI   50 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~   50 (88)
                      +.++.+|||+||..|.++.-..+..+|++.|.|+|+-
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll  103 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL  103 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence            4678899999999999999999998899999999974

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.54  E-value=0.0012  Score=35.88  Aligned_cols=58  Identities=29%  Similarity=0.343  Sum_probs=37.6

Q ss_pred             EEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          20 VLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        20 vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++|+|||+|... .+.........++++|.++.++..++..... .    ....+.+..+|...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~  109 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A----GLGLVDFVVADALG  109 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c----CCCceEEEEecccc
Confidence            999999999987 4444432224799999999999885555433 2    01115566665544

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.51  E-value=0.00089  Score=43.45  Aligned_cols=64  Identities=20%  Similarity=0.282  Sum_probs=50.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCc-ceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNI-KFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~d~~~   83 (88)
                      .+.++||.=+|+|.=++..+...+...+|++-|+|+++++..++|++.|+    ... ++++.+.|+..
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~----~~~~~~~v~~~DAn~  113 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG----LEDERIEVSNMDANV  113 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-----SGCCEEEEES-HHH
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc----ccCceEEEehhhHHH
Confidence            45589999999999999999986555689999999999999999999988    444 68888888754

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.49  E-value=0.00035  Score=41.46  Aligned_cols=46  Identities=17%  Similarity=0.294  Sum_probs=30.9

Q ss_pred             CCCeEEEecCCCChHHHHH----HHHh----CCCceEEEEeCCHHHHHHHHHhh
Q psy8023          16 PGAKVLDIGSGSGYLTACF----ADLV----GSNGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l----~~~~----~~~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      +.-+||-.||++|.-+..+    .+..    +...+++|+|+|+.+++.|++-.
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~   84 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGI   84 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTE
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCC
Confidence            3458999999999844443    3311    11458999999999999997654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.48  E-value=0.0014  Score=39.96  Aligned_cols=65  Identities=22%  Similarity=0.187  Sum_probs=39.8

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh---hhcCCC-CCCCcceEEeeCCccccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI---QQGNPE-LLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~---~~~~~~-~~~~~~~~~~~~d~~~~~   85 (88)
                      .+|||..+|.|..++.++..   +++|+++|-||.+....++-+   ...... .....+++++.+|..+.+
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L  145 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYL  145 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHC
T ss_pred             CEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHH
Confidence            48999999999999999864   458999999997655554443   332200 001368999999988754

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.41  E-value=0.00052  Score=41.29  Aligned_cols=63  Identities=22%  Similarity=0.055  Sum_probs=40.7

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      ..+.||.|+|.|.++..++-..  -.+|..+|.++..++.|++.+....     ....++.+.-+++..|
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~-----~~v~~~~~~gLQ~f~P  118 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN-----PRVGEFYCVGLQDFTP  118 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-----CCEEEEEES-GGG---
T ss_pred             cceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC-----CCcceEEecCHhhccC
Confidence            4589999999999998775543  3379999999999999998776522     2334455554444333

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.33  E-value=0.0019  Score=40.11  Aligned_cols=46  Identities=15%  Similarity=0.209  Sum_probs=34.8

Q ss_pred             CCeEEEecCCCCh----HHHHHHHHhC----CCceEEEEeCCHHHHHHHHHhhh
Q psy8023          17 GAKVLDIGSGSGY----LTACFADLVG----SNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus        17 ~~~vlD~g~G~G~----~~~~l~~~~~----~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      .-+||-+||++|-    +++.+.+..+    ...+++|+|+|..+++.|+.-+.
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y  150 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIY  150 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCC
Confidence            5689999999997    3334445543    25789999999999999976553

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.31  E-value=0.00048  Score=41.96  Aligned_cols=38  Identities=34%  Similarity=0.325  Sum_probs=32.2

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHH
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVL   54 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~   54 (88)
                      .++.++||+|+.||+++..+.+..  -.+|+|+|.....+
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql  115 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQL  115 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCcc
Confidence            578899999999999999999984  34899999877443

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.27  E-value=0.00093  Score=39.96  Aligned_cols=62  Identities=15%  Similarity=0.188  Sum_probs=35.1

Q ss_pred             CCCeEEEecCCCChHHHHHHH---HhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFAD---LVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~---~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++..|+|+|.-.|+-++.++.   .++++++|+++|++.....  ++....++    ...+++++.||..+
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp----~~~rI~~i~Gds~d   96 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHP----MSPRITFIQGDSID   96 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG--------TTEEEEES-SSS
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhcc----ccCceEEEECCCCC
Confidence            346899999999999888765   3456789999999653322  12222233    35789999999875

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=97.26  E-value=0.0011  Score=40.68  Aligned_cols=60  Identities=15%  Similarity=0.228  Sum_probs=42.4

Q ss_pred             HHHHHHHhhcCCC--CCeEEEecCCCChHHHHHHHHhCCC-------ceEEEEeCCHHHHHHHHHhhhh
Q psy8023           4 ARALELLKDNLKP--GAKVLDIGSGSGYLTACFADLVGSN-------GEVTAVELIPEVLQFTHYNIQQ   63 (88)
Q Consensus         4 ~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~l~~~~~~~-------~~v~~~D~~~~~~~~a~~~~~~   63 (88)
                      .+++......-.+  .-+|+|+|+|.|.+...+++.+...       .+++.+|.|+.+.+.-++++..
T Consensus         4 ~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen    4 RWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             HHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             HHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            4455555543223  3599999999999999998887433       4899999999888888887765

; PDB: 4F3N_A 1ZKD_B.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.19  E-value=0.0012  Score=41.41  Aligned_cols=45  Identities=24%  Similarity=0.263  Sum_probs=33.7

Q ss_pred             CCeEEEecCCCChHHHHHH----HHhC---CCceEEEEeCCHHHHHHHHHhh
Q psy8023          17 GAKVLDIGSGSGYLTACFA----DLVG---SNGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~----~~~~---~~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      .-+||-.||++|--...++    +..+   .+.+|+|+|+|+.+++.|++-.
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~  167 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGI  167 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCC
Confidence            3699999999998444433    3221   1468999999999999998764

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.17  E-value=0.0019  Score=41.67  Aligned_cols=48  Identities=19%  Similarity=0.230  Sum_probs=43.4

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      ..+|+|.-+|+|.=++.++... +..+++.-|+||.+++..++|++.|.
T Consensus        53 ~~~v~DalsatGiRgIRya~E~-~~~~v~lNDisp~Avelik~Nv~~N~  100 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVET-GVVKVVLNDISPKAVELIKENVRLNS  100 (380)
T ss_pred             CeEEeecccccchhHhhhhhhc-CccEEEEccCCHHHHHHHHHHHHhcC
Confidence            5789999999999999999987 33499999999999999999999984

>KOG4058|consensus

Probab=97.02  E-value=0.0017  Score=37.27  Aligned_cols=61  Identities=20%  Similarity=0.251  Sum_probs=44.6

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG   81 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (88)
                      .+..+.+|+|+|-|.+....++.-  --..+|+|+++-.+..++-..-+.+    ...+..|...|+
T Consensus        71 n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g----~~k~trf~Rkdl  131 (199)
T KOG4058|consen   71 NPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAG----CAKSTRFRRKDL  131 (199)
T ss_pred             CCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHh----cccchhhhhhhh
Confidence            344589999999999988888873  2358999999999988887766555    334444544444

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.81  E-value=0.0032  Score=34.03  Aligned_cols=33  Identities=15%  Similarity=0.145  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP   51 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~   51 (88)
                      +....+|+|||+|.+...+...   +-+-.|+|.-.
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~   90 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDARR   90 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhC---CCCcccccccc
Confidence            3557999999999998777765   33467888754

; GO: 0008168 methyltransferase activity

>KOG2651|consensus

Probab=96.79  E-value=0.011  Score=38.64  Aligned_cols=43  Identities=21%  Similarity=0.208  Sum_probs=35.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      .-+.++|+|.|.|.++..+.-.+  +..|.++|-|....+.|++.
T Consensus       153 gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~rL  195 (476)
T KOG2651|consen  153 GIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQRL  195 (476)
T ss_pred             CCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHHH
Confidence            34589999999999999998876  66899999998777666543

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=96.78  E-value=0.0096  Score=33.57  Aligned_cols=43  Identities=28%  Similarity=0.390  Sum_probs=28.0

Q ss_pred             EecCCCC--hHHHHHH-HHhCCCceEEEEeCCHHHHHHHHHh--hhhc
Q psy8023          22 DIGSGSG--YLTACFA-DLVGSNGEVTAVELIPEVLQFTHYN--IQQG   64 (88)
Q Consensus        22 D~g~G~G--~~~~~l~-~~~~~~~~v~~~D~~~~~~~~a~~~--~~~~   64 (88)
                      |+|+..|  .....+. +...+..+++++|.+|..++..+++  +..+
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~   48 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN   48 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence            8999999  5555544 2345778999999999999999998  5544

; PDB: 2PY6_A.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=96.75  E-value=0.037  Score=34.02  Aligned_cols=64  Identities=16%  Similarity=0.153  Sum_probs=39.4

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      -.+++|+=+| --=.++++++-. +...+++-+|+++..++..++..++.+     .. ++.+..|..+++|
T Consensus        43 L~gk~il~lG-DDDLtSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~g-----l~-i~~~~~DlR~~LP  106 (243)
T PF01861_consen   43 LEGKRILFLG-DDDLTSLALALT-GLPKRITVVDIDERLLDFINRVAEEEG-----LP-IEAVHYDLRDPLP  106 (243)
T ss_dssp             STT-EEEEES--TT-HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHHT--------EEEE---TTS---
T ss_pred             ccCCEEEEEc-CCcHHHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHcC-----Cc-eEEEEecccccCC
Confidence            4678999888 333344555443 356799999999999999999999887     33 9999999999887

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG3987|consensus

Probab=96.74  E-value=0.00025  Score=42.72  Aligned_cols=42  Identities=29%  Similarity=0.292  Sum_probs=36.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      .+.++||+|+|.|-++..++..+.   +|+++|.|..|....++.
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk  153 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKK  153 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhc
Confidence            456899999999999999998873   499999999998877654

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.71  E-value=0.01  Score=39.90  Aligned_cols=50  Identities=16%  Similarity=0.167  Sum_probs=42.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGS---NGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      +..+|+|-.||+|+........++.   ...++|.|+++.....++-+.-.++
T Consensus       186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg  238 (489)
T COG0286         186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG  238 (489)
T ss_pred             CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC
Confidence            5568999999999998888887743   3679999999999999999987766

>KOG1596|consensus

Probab=96.68  E-value=0.0036  Score=38.61  Aligned_cols=48  Identities=35%  Similarity=0.585  Sum_probs=40.8

Q ss_pred             cCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHH----HHHHHHh
Q psy8023          13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEV----LQFTHYN   60 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~----~~~a~~~   60 (88)
                      +++++.+||-+|++.|....++..-.+|.+-|+++|.|+..    +..|+++
T Consensus       153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR  204 (317)
T KOG1596|consen  153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR  204 (317)
T ss_pred             eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc
Confidence            45789999999999999999999999999999999999844    4455443

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.61  E-value=0.0073  Score=37.58  Aligned_cols=43  Identities=19%  Similarity=0.127  Sum_probs=35.5

Q ss_pred             eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhh
Q psy8023          19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ   63 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~   63 (88)
                      +++|+.||.|..+..+.+..  -..+.++|+++.+++..+.|+..
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~   44 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPN   44 (275)
T ss_pred             cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCC
Confidence            68999999999988887652  33589999999999988887653

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG2940|consensus

Probab=96.54  E-value=0.0066  Score=37.34  Aligned_cols=43  Identities=9%  Similarity=0.086  Sum_probs=36.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      ..+.++|+||+.|.+..++....  -.+++.+|.|..|++.++.-
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~  114 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDA  114 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhcc
Confidence            45689999999999999988763  45799999999999998774

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=96.50  E-value=0.019  Score=35.65  Aligned_cols=48  Identities=21%  Similarity=0.385  Sum_probs=36.2

Q ss_pred             HHHHHHHhhc--CCCCCeEEEecCCCChHHHHHHHHhC----CCceEEEEeCCH
Q psy8023           4 ARALELLKDN--LKPGAKVLDIGSGSGYLTACFADLVG----SNGEVTAVELIP   51 (88)
Q Consensus         4 ~~~~~~~~~~--~~~~~~vlD~g~G~G~~~~~l~~~~~----~~~~v~~~D~~~   51 (88)
                      +.++..+...  +.++..++|+|||.|.++..+++...    +...++.+|-..
T Consensus         4 sSli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~   57 (259)
T PF05206_consen    4 SSLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS   57 (259)
T ss_pred             HHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence            3455555542  45677999999999999999999873    346899999855

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=96.46  E-value=0.011  Score=33.49  Aligned_cols=34  Identities=12%  Similarity=0.135  Sum_probs=27.3

Q ss_pred             eEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCC
Q psy8023          43 EVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGE   80 (88)
Q Consensus        43 ~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d   80 (88)
                      +|+++|+.+++++.+++++...+    ...+++++..+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~----~~~~v~li~~s   34 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAG----LEDRVTLILDS   34 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-----GSGEEEEES-
T ss_pred             CEEEEECHHHHHHHHHHHHHhcC----CCCcEEEEECC
Confidence            69999999999999999999887    45678887764

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG3178|consensus

Probab=96.38  E-value=0.0094  Score=38.25  Aligned_cols=58  Identities=10%  Similarity=0.082  Sum_probs=42.0

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      -...+|+|.|.|.++-.+...+ |  ++-+++.+...+..+...+. .+        ++.+-+|..+..|
T Consensus       178 v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~-~g--------V~~v~gdmfq~~P  235 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA-PG--------VEHVAGDMFQDTP  235 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc-CC--------cceecccccccCC
Confidence            3678999999999999999976 5  48888888877766666554 22        5555555555443

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=96.36  E-value=0.044  Score=34.06  Aligned_cols=54  Identities=31%  Similarity=0.457  Sum_probs=43.4

Q ss_pred             HHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023           9 LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus         9 ~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      .+...-.++..|+|.-+|+|.+.+..... +.  +++++|++++.++.+.+++....
T Consensus       215 ~i~~~s~~~diVlDpf~GsGtt~~aa~~~-~r--~~ig~e~~~~y~~~~~~r~~~~~  268 (302)
T COG0863         215 LIRDYSFPGDIVLDPFAGSGTTGIAAKNL-GR--RFIGIEINPEYVEVALKRLQEGL  268 (302)
T ss_pred             HHHhcCCCCCEEeecCCCCChHHHHHHHc-CC--ceEEEecCHHHHHHHHHHHHhhc
Confidence            33334567889999999999998876665 34  69999999999999999987644

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=96.22  E-value=0.052  Score=35.26  Aligned_cols=60  Identities=20%  Similarity=0.261  Sum_probs=43.9

Q ss_pred             HHHHHHhhcCCC-CCeEEEecCCCChHHHHHHHHh---C----CCceEEEEeCCHHHHHHHHHhhhhc
Q psy8023           5 RALELLKDNLKP-GAKVLDIGSGSGYLTACFADLV---G----SNGEVTAVELIPEVLQFTHYNIQQG   64 (88)
Q Consensus         5 ~~~~~~~~~~~~-~~~vlD~g~G~G~~~~~l~~~~---~----~~~~v~~~D~~~~~~~~a~~~~~~~   64 (88)
                      .+++.+.....| .-.++|+|.|.|.+...+++..   .    ...++..+|.|++..+.=+++++..
T Consensus        65 ~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          65 QFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             HHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            445555544343 4479999999999999887765   1    2468999999999887777776654

>KOG2360|consensus

Probab=96.16  E-value=0.013  Score=38.16  Aligned_cols=65  Identities=18%  Similarity=0.204  Sum_probs=53.5

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+++..|+|.+|-.|.-+++++....+.++++|.|.++...+..+..++..+     ...++...+|.+.
T Consensus       211 p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag-----~~~~~~~~~df~~  275 (413)
T KOG2360|consen  211 PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAG-----VSIVESVEGDFLN  275 (413)
T ss_pred             CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcC-----CCccccccccccC
Confidence            4567899999999999999999998778999999999999888888887766     4455555666554

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.14  E-value=0.014  Score=35.87  Aligned_cols=49  Identities=16%  Similarity=0.176  Sum_probs=36.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      ++.++||+|.|.-.+=..+..+ .-+.+++|.|+++.+++.|+.++..|.
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~-eYgwrfvGseid~~sl~sA~~ii~~N~  126 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVH-EYGWRFVGSEIDSQSLSSAKAIISANP  126 (292)
T ss_pred             CceEEEeeccCcccccccccce-eecceeecCccCHHHHHHHHHHHHcCc
Confidence            4558899998866542222222 236689999999999999999998874

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=96.07  E-value=0.022  Score=35.59  Aligned_cols=42  Identities=29%  Similarity=0.256  Sum_probs=33.7

Q ss_pred             eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023          19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      +++|+.||.|+++..+-+..  -..+.++|+++.+.+.-+.|+.
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~   43 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP   43 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT
T ss_pred             cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc
Confidence            68999999999999887763  3368999999998777777664

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>KOG2352|consensus

Probab=96.02  E-value=0.0022  Score=42.68  Aligned_cols=60  Identities=25%  Similarity=0.302  Sum_probs=46.6

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      +..++-+|-|.|.+..++.-.+ +..++++++++|++++.+++++....     ..+..++..|..
T Consensus       296 ~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q-----~~r~~V~i~dGl  355 (482)
T KOG2352|consen  296 GGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQ-----SDRNKVHIADGL  355 (482)
T ss_pred             cCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhh-----hhhhhhhHhhch
Confidence            4468888888899999998887 67899999999999999999986544     334445444443

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=96.01  E-value=0.011  Score=33.86  Aligned_cols=37  Identities=11%  Similarity=-0.049  Sum_probs=27.2

Q ss_pred             EEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          45 TAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        45 ~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +|+|+|++|++.|+++.+.....  ...+++++++|+.+
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~--~~~~i~~~~~d~~~   37 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARS--CYKCIEWIEGDAID   37 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhccccc--CCCceEEEEechhh
Confidence            48999999999998876532200  13579999999864

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.01  E-value=0.0044  Score=41.50  Aligned_cols=42  Identities=17%  Similarity=0.181  Sum_probs=27.7

Q ss_pred             eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      .+||+|||+|.++..+..+---.-.+..-|..+..+++|.++
T Consensus       120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR  161 (506)
T PF03141_consen  120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER  161 (506)
T ss_pred             EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc
Confidence            679999999999999988621100112224455677777765

; GO: 0008168 methyltransferase activity

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=95.94  E-value=0.025  Score=34.19  Aligned_cols=30  Identities=23%  Similarity=0.330  Sum_probs=17.4

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHH
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFA   35 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~   35 (88)
                      .+++++.. .++...|-|+|||.+.++..+.
T Consensus        62 ~iI~~l~~-~~~~~viaD~GCGdA~la~~~~   91 (219)
T PF05148_consen   62 VIIEWLKK-RPKSLVIADFGCGDAKLAKAVP   91 (219)
T ss_dssp             HHHHHHCT-S-TTS-EEEES-TT-HHHHH--
T ss_pred             HHHHHHHh-cCCCEEEEECCCchHHHHHhcc
Confidence            45556653 3456799999999999886554

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG2671|consensus

Probab=95.82  E-value=0.0088  Score=38.65  Aligned_cols=65  Identities=20%  Similarity=0.167  Sum_probs=48.1

Q ss_pred             cCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHH-------HHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ-------FTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+.+|+.|+|-.-|||.+....++.   ++.|+|.||+-.++.       ..+.|+++++.+   ..-+.++.+|...
T Consensus       205 mv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~---~~fldvl~~D~sn  276 (421)
T KOG2671|consen  205 MVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS---SQFLDVLTADFSN  276 (421)
T ss_pred             ccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCc---chhhheeeecccC
Confidence            3678999999999999998887776   458999999998876       446677777633   2334566666543

>KOG1098|consensus

Probab=95.81  E-value=0.014  Score=40.40  Aligned_cols=38  Identities=21%  Similarity=0.325  Sum_probs=33.9

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP   51 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~   51 (88)
                      +.+...|||+||..|++....++..+.++-|+|+|+-|
T Consensus        42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p   79 (780)
T KOG1098|consen   42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP   79 (780)
T ss_pred             ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence            56788999999999999999999987788899999865

>KOG2920|consensus

Probab=95.79  E-value=0.018  Score=36.09  Aligned_cols=38  Identities=24%  Similarity=0.221  Sum_probs=32.0

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHH
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVL   54 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~   54 (88)
                      ..+++|||+|||.|...+......  ...+...|++.+.+
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~--~~~~~fqD~na~vl  152 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKG--AVSVHFQDFNAEVL  152 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhc--cceeeeEecchhhe
Confidence            568899999999999988877763  35799999998777

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=95.76  E-value=0.026  Score=34.41  Aligned_cols=54  Identities=9%  Similarity=0.159  Sum_probs=35.9

Q ss_pred             HHHHHhhcCC--CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023           6 ALELLKDNLK--PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus         6 ~~~~~~~~~~--~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      ++.++...++  +..+++|..||+|.++..+...   ..+++.-|+++..+...+..++
T Consensus         8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~---~~~vi~ND~~~~l~~~~~~~l~   63 (260)
T PF02086_consen    8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQP---GKRVIINDINPDLINFWKAVLK   63 (260)
T ss_dssp             GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC------SSEEEEEES-HHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCEEEEEecchhHHHHHhccc---ccceeeeechHHHHHHHHHHHh
Confidence            4555666666  5789999999999998777653   4579999999988776664443

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>KOG0024|consensus

Probab=95.74  E-value=0.042  Score=35.28  Aligned_cols=45  Identities=31%  Similarity=0.536  Sum_probs=39.5

Q ss_pred             CCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +..+.+||-+|+| .|..+...++.+ .-.+|+.+|.++..++.|++
T Consensus       167 vk~Gs~vLV~GAGPIGl~t~l~Aka~-GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  167 VKKGSKVLVLGAGPIGLLTGLVAKAM-GASDVVITDLVANRLELAKK  212 (354)
T ss_pred             cccCCeEEEECCcHHHHHHHHHHHHc-CCCcEEEeecCHHHHHHHHH
Confidence            5788999999999 677888888887 45789999999999999998

>KOG2198|consensus

Probab=95.74  E-value=0.069  Score=34.75  Aligned_cols=53  Identities=28%  Similarity=0.380  Sum_probs=41.9

Q ss_pred             cCCCCCeEEEecCCCChHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          13 NLKPGAKVLDIGSGSGYLTACFADLVGS---NGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      .+.++.+|||+|+.-|.-+..+.+..-+   .+.+++-|.++.-+........+..
T Consensus       152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~  207 (375)
T KOG2198|consen  152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP  207 (375)
T ss_pred             ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC
Confidence            3678999999999999999888887522   3489999999988777777665443

>PRK10458 DNA cytosine methylase; Provisional

Probab=95.55  E-value=0.071  Score=35.82  Aligned_cols=43  Identities=16%  Similarity=0.139  Sum_probs=34.3

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      ..+++|+.||.|++...+-...  .-.+.++|+++.+.+.-+.|+
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG--~~~v~a~Eid~~A~~TY~~N~  130 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIG--GQCVFTSEWNKHAVRTYKANW  130 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcC--CEEEEEEechHHHHHHHHHHc
Confidence            3489999999999999986652  235789999998887777665

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=95.55  E-value=0.23  Score=31.11  Aligned_cols=40  Identities=30%  Similarity=0.261  Sum_probs=33.6

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +.+||--|||.|.++..++..   +-.+.|.|.|--|+-..+-
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~f   96 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNF   96 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHH
Confidence            468999999999999999997   4479999999988654444

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG2793|consensus

Probab=95.37  E-value=0.049  Score=33.66  Aligned_cols=34  Identities=32%  Similarity=0.416  Sum_probs=27.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP   51 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~   51 (88)
                      +..+||++|+|+|-.++..+...  ..+|...|...
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~  119 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDLPK  119 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHh--cceeccCCchh
Confidence            34579999999998888888765  55899999866

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.12  E-value=0.1  Score=33.66  Aligned_cols=46  Identities=28%  Similarity=0.387  Sum_probs=37.8

Q ss_pred             CCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023          14 LKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus        14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      +.++++|+-+|+| .|..++.+++..  ..+|+++|.+++-.+.|++.-
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~lG  210 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKLG  210 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHhC
Confidence            6788888888866 566888888876  379999999999999998863

>KOG2912|consensus

Probab=95.02  E-value=0.086  Score=34.02  Aligned_cols=56  Identities=20%  Similarity=0.234  Sum_probs=41.3

Q ss_pred             EEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023          21 LDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG   81 (88)
Q Consensus        21 lD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (88)
                      +|+|+|...+-..+... ..+..+.++|++...++.|.+++.+++    ..+.+.++..+.
T Consensus       107 iDIgtgasci~~llg~r-q~n~~f~~teidd~s~~~a~snV~qn~----lss~ikvV~~~~  162 (419)
T KOG2912|consen  107 IDIGTGASCIYPLLGAR-QNNWYFLATEIDDMSFNYAKSNVEQNN----LSSLIKVVKVEP  162 (419)
T ss_pred             eeccCchhhhHHhhhch-hccceeeeeeccccccchhhccccccc----cccceeeEEecc
Confidence            68888776654333333 245789999999999999999999988    566666666544

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=94.90  E-value=0.049  Score=33.81  Aligned_cols=47  Identities=19%  Similarity=0.126  Sum_probs=30.9

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG   64 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~   64 (88)
                      ++.++||+|||.-......+...  -.+++..|.++.-.+..++.++..
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~--f~~I~l~dy~~~N~~el~kWl~~~  102 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEW--FEEIVLSDYSEQNREELEKWLRKE  102 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGT--EEEEEEEESSHHHHHHHHHHHTT-
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHh--hcceEEeeccHhhHHHHHHHHCCC
Confidence            46689999999855433323222  336999999999999888887654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG1253|consensus

Probab=94.83  E-value=0.015  Score=39.07  Aligned_cols=63  Identities=17%  Similarity=0.219  Sum_probs=51.5

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG   81 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (88)
                      .++.+|||.=|++|.-++..+...+.-.++++-|.++.+++..++|++.++    ..+.++...+|+
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~----v~~ive~~~~DA  170 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG----VEDIVEPHHSDA  170 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC----chhhcccccchH
Confidence            456689999999999999999998666689999999999999999999886    344445555544

>KOG1709|consensus

Probab=94.81  E-value=0.28  Score=30.10  Aligned_cols=46  Identities=24%  Similarity=0.323  Sum_probs=37.3

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      .++.+||.+|-|.|....++-++  +..+=+-+|..+..++..++.--
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~--~p~~H~IiE~hp~V~krmr~~gw  145 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEA--PPDEHWIIEAHPDVLKRMRDWGW  145 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhc--CCcceEEEecCHHHHHHHHhccc
Confidence            67889999999999988877666  33456778999999998888643

>KOG2782|consensus

Probab=94.79  E-value=0.061  Score=32.96  Aligned_cols=57  Identities=21%  Similarity=0.265  Sum_probs=46.2

Q ss_pred             cHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023           2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      |....++.+.  ..++...+|+.-|.|..+..+.+.. +..++++.|-+|.+.+.|+...
T Consensus        31 m~devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s   87 (303)
T KOG2782|consen   31 MLDEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHS   87 (303)
T ss_pred             ehhhHHHHcC--CCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhh
Confidence            4556666666  4567889999999999999999986 7889999999998877776554

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=94.68  E-value=0.16  Score=32.89  Aligned_cols=46  Identities=35%  Similarity=0.582  Sum_probs=37.2

Q ss_pred             CCCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          14 LKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        14 ~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      +.++.+|+..|+|. |..++.+++..+ ..++++++.+++..+.+++.
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence            56788999999987 888888888863 23699999999888888765

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG0821|consensus

Probab=94.56  E-value=0.16  Score=31.34  Aligned_cols=59  Identities=19%  Similarity=0.144  Sum_probs=42.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      .+..|+++|.|.|+++..+....  -.+...+|+++..+.-.+..... .     ..+..++.+|+.
T Consensus        50 ~~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EA-a-----~~~~~IHh~D~L  108 (326)
T KOG0821|consen   50 TNAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEA-A-----PGKLRIHHGDVL  108 (326)
T ss_pred             ccceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhc-C-----CcceEEeccccc
Confidence            45689999999999999998864  44788899988776555444332 2     346667777765

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=94.49  E-value=0.08  Score=31.89  Aligned_cols=38  Identities=45%  Similarity=0.704  Sum_probs=33.8

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP   51 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~   51 (88)
                      +.+++.|+|+-.|.|.++..++...++.+.|++.--.+
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e   83 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE   83 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence            46889999999999999999999999999998886554

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=94.46  E-value=0.18  Score=32.50  Aligned_cols=46  Identities=30%  Similarity=0.517  Sum_probs=37.5

Q ss_pred             CCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023          15 KPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus        15 ~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      .++.+|+-+||| .|..+..+++.. ...+++.+|.++.-++.|++..
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~~~  213 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKEAG  213 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHHhC
Confidence            344489999999 577777788876 4578999999999999999854

>KOG1269|consensus

Probab=94.32  E-value=0.074  Score=34.63  Aligned_cols=55  Identities=22%  Similarity=0.259  Sum_probs=41.8

Q ss_pred             HHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023           9 LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus         9 ~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      .+.....++..++|+|||.|.....+....  ..++++++.++..+..+.+......
T Consensus       103 ~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~  157 (364)
T KOG1269|consen  103 ALRESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAY  157 (364)
T ss_pred             HHhhcCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHH
Confidence            333345667789999999999988887763  6689999999988777766655433

>KOG0822|consensus

Probab=94.30  E-value=0.44  Score=32.87  Aligned_cols=62  Identities=13%  Similarity=0.066  Sum_probs=45.8

Q ss_pred             eEEEecCCCChHHHHHHH---HhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          19 KVLDIGSGSGYLTACFAD---LVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~---~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      +|+-+|.|-|-+.-...+   ...+..+++++|.+|.++.-.+.. ....    ...+++++..|.+++.
T Consensus       370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~----W~~~Vtii~~DMR~w~  434 (649)
T KOG0822|consen  370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFEC----WDNRVTIISSDMRKWN  434 (649)
T ss_pred             EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhh----hcCeeEEEeccccccC
Confidence            688999999987666544   344567899999999887666552 2222    4678999999988764

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=94.27  E-value=0.14  Score=32.53  Aligned_cols=41  Identities=20%  Similarity=0.076  Sum_probs=32.7

Q ss_pred             EEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023          20 VLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus        20 vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      |+|+.||.|..+..+.+..  --.+.++|+++.+++.-+.|+.
T Consensus         1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~   41 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFG   41 (315)
T ss_pred             CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCC
Confidence            6899999999998887652  2246789999999888887764

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.04  E-value=0.13  Score=27.47  Aligned_cols=36  Identities=19%  Similarity=0.284  Sum_probs=28.2

Q ss_pred             CCCChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHh
Q psy8023          25 SGSGYLTACFADLVGSNG-EVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        25 ~G~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~   60 (88)
                      ||.|..+..+++.+.... +++.+|.+++.++.+++.
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~   40 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE   40 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc
Confidence            677889999988775555 799999999887777653

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PTZ00357 methyltransferase; Provisional

Probab=94.04  E-value=0.49  Score=33.86  Aligned_cols=65  Identities=20%  Similarity=0.188  Sum_probs=44.4

Q ss_pred             eEEEecCCCChHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHhhhhcCCCC-----CCCcceEEeeCCcccc
Q psy8023          19 KVLDIGSGSGYLTACFADLV---GSNGEVTAVELIPEVLQFTHYNIQQGNPEL-----LPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~d~~~~   84 (88)
                      .|+-+|+|-|-+.....+..   +-..+++++|.++..+.....+..... .|     ....+|+++..|++.+
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~e-eW~n~~~~~G~~VtII~sDMR~W  775 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDP-EWTQLAYTFGHTLEVIVADGRTI  775 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhccc-ccccccccCCCeEEEEeCccccc
Confidence            58999999999876665543   345689999999775555544432222 12     0135799999998875

>KOG3045|consensus

Probab=94.02  E-value=0.13  Score=32.33  Aligned_cols=28  Identities=14%  Similarity=0.266  Sum_probs=20.3

Q ss_pred             HHHHHHHhhcCCCCCeEEEecCCCChHHH
Q psy8023           4 ARALELLKDNLKPGAKVLDIGSGSGYLTA   32 (88)
Q Consensus         4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~   32 (88)
                      ..+++++.. .+....|.|+|||.+.++.
T Consensus       169 d~ii~~ik~-r~~~~vIaD~GCGEakiA~  196 (325)
T KOG3045|consen  169 DVIIRKIKR-RPKNIVIADFGCGEAKIAS  196 (325)
T ss_pred             HHHHHHHHh-CcCceEEEecccchhhhhh
Confidence            345566653 3556789999999999875

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=93.93  E-value=0.26  Score=31.51  Aligned_cols=44  Identities=27%  Similarity=0.237  Sum_probs=35.8

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      ..+++|+.||.|++...+-...  ---+.++|+++.+++.-+.|+.
T Consensus         3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~   46 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFP   46 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCC
Confidence            4589999999999998877753  2358999999998888777766

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=93.89  E-value=0.37  Score=30.70  Aligned_cols=64  Identities=11%  Similarity=0.130  Sum_probs=48.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      .++.|+-+| ---.++++++-. +-..++.-+|+++..+++-++.....+     ..+++...-|+++.+|
T Consensus       152 ~gK~I~vvG-DDDLtsia~aLt-~mpk~iaVvDIDERli~fi~k~aee~g-----~~~ie~~~~Dlr~plp  215 (354)
T COG1568         152 EGKEIFVVG-DDDLTSIALALT-GMPKRIAVVDIDERLIKFIEKVAEELG-----YNNIEAFVFDLRNPLP  215 (354)
T ss_pred             CCCeEEEEc-CchhhHHHHHhc-CCCceEEEEechHHHHHHHHHHHHHhC-----ccchhheeehhcccCh
Confidence            355688888 333344444332 234589999999999999999999888     7889999999998887

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=93.64  E-value=0.54  Score=27.08  Aligned_cols=44  Identities=14%  Similarity=0.277  Sum_probs=28.5

Q ss_pred             HHHHHHhhcCC-CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeC
Q psy8023           5 RALELLKDNLK-PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL   49 (88)
Q Consensus         5 ~~~~~~~~~~~-~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~   49 (88)
                      .++++....+. -..-|+|+|-|+|.+=-++.+.+ |+-+++.+|-
T Consensus        16 ~~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~-p~R~I~vfDR   60 (160)
T PF12692_consen   16 DCLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIF-PDRRIYVFDR   60 (160)
T ss_dssp             HHHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH---SS-EEEEES
T ss_pred             HHHHHHHHHhcCCCCceEEeccCCCccHHHHHHhC-CCCeEEEEee
Confidence            35566655443 23479999999999999999998 7788999995

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=93.55  E-value=0.3  Score=33.28  Aligned_cols=42  Identities=38%  Similarity=0.450  Sum_probs=34.9

Q ss_pred             CCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          16 PGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        16 ~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      ++.+|+-+|+|. |..++..++..+  .+|+++|.+++.++.+++
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes  206 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES  206 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            578999999995 557777788774  489999999999888877

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=93.50  E-value=0.47  Score=31.21  Aligned_cols=45  Identities=20%  Similarity=0.282  Sum_probs=31.9

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      +.++.+||-|.+|.......+..   .+.+|++||+||......+-+.
T Consensus        33 i~~~d~vl~ItSaG~N~L~yL~~---~P~~I~aVDlNp~Q~aLleLKl   77 (380)
T PF11899_consen   33 IGPDDRVLTITSAGCNALDYLLA---GPKRIHAVDLNPAQNALLELKL   77 (380)
T ss_pred             CCCCCeEEEEccCCchHHHHHhc---CCceEEEEeCCHHHHHHHHHHH
Confidence            67888999998776665555444   3468999999997765554443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK08339 short chain dehydrogenase; Provisional

Probab=93.42  E-value=1.1  Score=27.45  Aligned_cols=62  Identities=13%  Similarity=0.094  Sum_probs=39.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.|++ |.++..+++.+ ..+.+|+.++.+++.++...+.+....     ..++.++..|+.+
T Consensus         7 ~~k~~lItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~   69 (263)
T PRK08339          7 SGKLAFTTASS-KGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-----NVDVSYIVADLTK   69 (263)
T ss_pred             CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCCC
Confidence            45677766655 44555555543 246689999998877766666554322     2356777777765

>KOG1331|consensus

Probab=93.41  E-value=0.043  Score=34.55  Aligned_cols=42  Identities=19%  Similarity=0.249  Sum_probs=32.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      .+.+..++|+|||.|-....     .|.+.+++.|.+...+..+++.
T Consensus        43 ~~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~~   84 (293)
T KOG1331|consen   43 QPTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKRS   84 (293)
T ss_pred             cCCcceeeecccCCcccCcC-----CCcceeeecchhhhhccccccC
Confidence            45578999999999985322     2667899999999887776653

>KOG0022|consensus

Probab=93.31  E-value=0.48  Score=30.69  Aligned_cols=48  Identities=17%  Similarity=0.304  Sum_probs=36.1

Q ss_pred             cCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      .+++++.+.-+|+|.=.++...-.+...-.+++++|++++-.+.+++.
T Consensus       189 kv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f  236 (375)
T KOG0022|consen  189 KVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF  236 (375)
T ss_pred             ccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence            367888898898886555555544433467899999999999888774

>KOG3201|consensus

Probab=93.28  E-value=0.044  Score=32.05  Aligned_cols=48  Identities=15%  Similarity=0.158  Sum_probs=38.2

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG   64 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~   64 (88)
                      +.+|+++|.|.=.++-.+.....+...|..+|-++.+++..++....|
T Consensus        30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n   77 (201)
T KOG3201|consen   30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSN   77 (201)
T ss_pred             HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcc
Confidence            568999999965555555444458889999999999999999887766

>PRK07904 short chain dehydrogenase; Provisional

Probab=92.92  E-value=1.1  Score=27.22  Aligned_cols=64  Identities=8%  Similarity=0.014  Sum_probs=41.5

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHh-CC-CceEEEEeCCHHH-HHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLV-GS-NGEVTAVELIPEV-LQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~-~~-~~~v~~~D~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +..++++|-.|+ +|+++..+++.+ .. +.+|+.++-+++. ++.+.+.+...+     ..++.++..|+.+
T Consensus         5 ~~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-----~~~v~~~~~D~~~   71 (253)
T PRK07904          5 VGNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-----ASSVEVIDFDALD   71 (253)
T ss_pred             cCCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-----CCceEEEEecCCC
Confidence            445667888776 567777777764 23 3589999887764 555555554433     3367788787754

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=92.88  E-value=0.089  Score=34.44  Aligned_cols=38  Identities=21%  Similarity=0.324  Sum_probs=30.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHH
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEV   53 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~   53 (88)
                      ..++|||+|.|.|.-..++...++....++.+|.|+..
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~l  150 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPAL  150 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHH
Confidence            34679999999999888887877555678999999844

>PRK06940 short chain dehydrogenase; Provisional

Probab=92.84  E-value=1.4  Score=27.17  Aligned_cols=58  Identities=19%  Similarity=0.226  Sum_probs=38.6

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++--|+  |+++..+++.+..+.+|+.++.++..++...+.++..+      .++.++..|+.+
T Consensus         3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dv~d   60 (275)
T PRK06940          3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG------FDVSTQEVDVSS   60 (275)
T ss_pred             CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEEeecCC
Confidence            34555554  57888888887667789999998876665555544322      356667777654

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=92.46  E-value=1.2  Score=28.00  Aligned_cols=50  Identities=14%  Similarity=0.228  Sum_probs=36.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHh-hhhcC
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGS---NGEVTAVELIPEVLQFTHYN-IQQGN   65 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~---~~~v~~~D~~~~~~~~a~~~-~~~~~   65 (88)
                      .+...+|+|+|+..-+..+...+.+   ..+++.+|+|...++...+- ...+.
T Consensus        78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~  131 (321)
T COG4301          78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP  131 (321)
T ss_pred             CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC
Confidence            4568999999999988887776533   36899999999888654443 34443

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=92.44  E-value=1.9  Score=28.53  Aligned_cols=43  Identities=23%  Similarity=0.271  Sum_probs=30.9

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHh
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGS-NGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~   60 (88)
                      +.++++-+|+  |.++..+++.+.. +.+++.+|.+++.++..++.
T Consensus       230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~  273 (453)
T PRK09496        230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE  273 (453)
T ss_pred             CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH
Confidence            3467777776  6777777666533 56899999999888776653

>PRK06172 short chain dehydrogenase; Provisional

Probab=92.41  E-value=1.5  Score=26.41  Aligned_cols=61  Identities=11%  Similarity=-0.076  Sum_probs=39.9

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++++-.|+ +|.++..+++.+. .+.+|+.++-+++.++...+.+...+      .++.++..|+.+
T Consensus         6 ~~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~   67 (253)
T PRK06172          6 SGKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG------GEALFVACDVTR   67 (253)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEcCCCC
Confidence            4567887775 5566666665542 35689999998877666665554432      357777777764

>KOG2352|consensus

Probab=92.27  E-value=1  Score=30.58  Aligned_cols=61  Identities=15%  Similarity=0.193  Sum_probs=43.8

Q ss_pred             CCCC-eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGA-KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~-~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+-. +++-+|||+-.+...+....  --.++.+|+|+..++........ .     .....+..+|+..
T Consensus        46 ~p~~~~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~-~-----~~~~~~~~~d~~~  107 (482)
T KOG2352|consen   46 SPSDFKILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAK-E-----RPEMQMVEMDMDQ  107 (482)
T ss_pred             chhhceeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhcccc-C-----CcceEEEEecchh
Confidence            3334 89999999999888877754  23699999999998888776642 2     3445566666543

>PRK07063 short chain dehydrogenase; Provisional

Probab=92.20  E-value=1.6  Score=26.39  Aligned_cols=63  Identities=13%  Similarity=0.086  Sum_probs=40.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++++-.|++ |.++..+++.+ ..+.+|+.++.+++.++...+.+....    ...++.++..|+.+
T Consensus         6 ~~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~   69 (260)
T PRK07063          6 AGKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDV----AGARVLAVPADVTD   69 (260)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc----CCceEEEEEccCCC
Confidence            45678877754 55566666554 345689999998877776666555421    13457777777764

>PRK07102 short chain dehydrogenase; Provisional

Probab=92.19  E-value=1.6  Score=26.18  Aligned_cols=60  Identities=12%  Similarity=0.037  Sum_probs=39.2

Q ss_pred             CeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++-.| |+|.++..+++.+. .+.+|+.++.+++..+...+......     ..++.++..|+.+
T Consensus         2 ~~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~   62 (243)
T PRK07102          2 KKILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-----AVAVSTHELDILD   62 (243)
T ss_pred             cEEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-----CCeEEEEecCCCC
Confidence            3566566 56777777766643 45689999998876655544444322     3567888888765

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=92.06  E-value=0.16  Score=33.34  Aligned_cols=18  Identities=28%  Similarity=0.335  Sum_probs=15.0

Q ss_pred             CCeEEEecCCCChHHHHH
Q psy8023          17 GAKVLDIGSGSGYLTACF   34 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l   34 (88)
                      ...|+|+|||+|..++.+
T Consensus        64 ~~~iaDlGcs~G~ntl~~   81 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHI   81 (386)
T ss_pred             ceeEEEecCCCCccHHHH
Confidence            458999999999887665

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=92.04  E-value=0.75  Score=29.32  Aligned_cols=46  Identities=20%  Similarity=0.246  Sum_probs=30.7

Q ss_pred             CCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      ..++.+|+-+|+| .|..++.+++......+++++|.+++-++.+++
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~  207 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF  207 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence            4568899999875 233334445542124579999999988887765

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae

Probab=92.03  E-value=0.43  Score=28.26  Aligned_cols=58  Identities=22%  Similarity=0.358  Sum_probs=44.6

Q ss_pred             HHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023           7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus         7 ~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      -.|+.++...+...+|+|+-.|.+.-..++.. ..++++++|.-.+|-...+-++..++
T Consensus        70 rhwivnhckhdttyidiganvgtfcgiaarhi-tqgkiiaiepltemensirmnvqlnn  127 (286)
T PF05575_consen   70 RHWIVNHCKHDTTYIDIGANVGTFCGIAARHI-TQGKIIAIEPLTEMENSIRMNVQLNN  127 (286)
T ss_pred             hHhhhhhccCCceEEEeccccccchhhhhhhc-ccCceEEEechhhhhhheeeeeeeCC
Confidence            45666666677889999999999877667765 67899999988887777776666544

It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].

>PRK05599 hypothetical protein; Provisional

Probab=91.97  E-value=1.7  Score=26.24  Aligned_cols=59  Identities=15%  Similarity=0.145  Sum_probs=36.0

Q ss_pred             eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++-.|+ +++++..+++.+..+.+|+.++-+++.++...+.++..+     ...+.++..|+.+
T Consensus         2 ~vlItGa-s~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dv~d   60 (246)
T PRK05599          2 SILILGG-TSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRG-----ATSVHVLSFDAQD   60 (246)
T ss_pred             eEEEEeC-ccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc-----CCceEEEEcccCC
Confidence            3555555 455566666665556778888877776666655555433     2345666666654

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=91.97  E-value=1.1  Score=29.29  Aligned_cols=50  Identities=16%  Similarity=0.167  Sum_probs=35.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh------CCCceEEEEeC----CHHHHHHHHHhhhhcC
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV------GSNGEVTAVEL----IPEVLQFTHYNIQQGN   65 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~------~~~~~v~~~D~----~~~~~~~a~~~~~~~~   65 (88)
                      +.-+|+|+|.|.|.-=..+.+.+      +|..++|+++.    +...++.+.+++....
T Consensus       110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA  169 (374)
T PF03514_consen  110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFA  169 (374)
T ss_pred             cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHH
Confidence            34589999999998444444433      24558999999    7888888877765443

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=91.94  E-value=0.35  Score=29.16  Aligned_cols=40  Identities=25%  Similarity=0.331  Sum_probs=30.3

Q ss_pred             CCCCeEEEecCCCChHHHHHHHH---hCCCceEEEEeCCHHHH
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADL---VGSNGEVTAVELIPEVL   54 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~---~~~~~~v~~~D~~~~~~   54 (88)
                      .++..|+++|+-.|+.+++++..   .+.+.+|.++|++-..+
T Consensus        68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~  110 (237)
T COG3510          68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPL  110 (237)
T ss_pred             cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcC
Confidence            35568999999999988877653   45567899999976443

>PRK05867 short chain dehydrogenase; Provisional

Probab=91.67  E-value=1.9  Score=26.03  Aligned_cols=61  Identities=15%  Similarity=0.051  Sum_probs=38.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.|++ |.++..+++.+ ..+.+|+.++.+++.++...+.++..+      .++.++..|+.+
T Consensus         8 ~~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~   69 (253)
T PRK05867          8 HGKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG------GKVVPVCCDVSQ   69 (253)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC------CeEEEEEccCCC
Confidence            46678877754 45556665554 245689999998877766665554432      345666677654

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=91.61  E-value=1.4  Score=24.56  Aligned_cols=42  Identities=19%  Similarity=0.136  Sum_probs=24.3

Q ss_pred             HHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHH
Q psy8023           8 ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPE   52 (88)
Q Consensus         8 ~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~   52 (88)
                      +.+.... +..+++|+|-|.-......++..  +..|+++|+.+.
T Consensus         6 ~~ia~~~-~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~   47 (127)
T PF03686_consen    6 EYIARLN-NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR   47 (127)
T ss_dssp             HHHHHHS--SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S
T ss_pred             HHHHHhC-CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc
Confidence            3344333 33499999999888666666654  468999999986

; PDB: 2K4M_A.

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=91.56  E-value=1.2  Score=30.30  Aligned_cols=49  Identities=20%  Similarity=0.201  Sum_probs=37.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC---CCceEEEEeCCHHHHHHHHHhhhhc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG---SNGEVTAVELIPEVLQFTHYNIQQG   64 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~---~~~~v~~~D~~~~~~~~a~~~~~~~   64 (88)
                      ++..+.|..||+|.+.....+...   ...++++-+..+.+...++.+...+
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~  268 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILH  268 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHc
Confidence            446899999999998876554331   2346999999999999999886443

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PRK07062 short chain dehydrogenase; Provisional

Probab=91.53  E-value=2  Score=26.07  Aligned_cols=63  Identities=11%  Similarity=0.070  Sum_probs=39.2

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++.++-.|++ |.++..+++.+ ..+.+|+.++.+++.++.+.+......    ...++.++..|+.+
T Consensus         7 ~~k~~lItGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~   70 (265)
T PRK07062          7 EGRVAVVTGGS-SGIGLATVELLLEAGASVAICGRDEERLASAEARLREKF----PGARLLAARCDVLD   70 (265)
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhC----CCceEEEEEecCCC
Confidence            45677777754 45555665554 346689999998877766655554322    12356666667654

>PRK09242 tropinone reductase; Provisional

Probab=91.36  E-value=2.1  Score=25.89  Aligned_cols=63  Identities=14%  Similarity=0.121  Sum_probs=39.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+++++-.|++ |.++..+++.+ ..+.+|+.++.+++..+...+.+....    ...++.++..|+.+
T Consensus         8 ~~k~~lItGa~-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dl~~   71 (257)
T PRK09242          8 DGQTALITGAS-KGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEF----PEREVHGLAADVSD   71 (257)
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC----CCCeEEEEECCCCC
Confidence            45677877764 45555555543 245689999988877766665554432    13456777777654

>PRK06125 short chain dehydrogenase; Provisional

Probab=91.33  E-value=2.1  Score=25.92  Aligned_cols=62  Identities=15%  Similarity=0.149  Sum_probs=38.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++++-.|+ +|.++..+++.+ ..+.+|+.++.+++..+...+.+....     ..++.++..|+.+
T Consensus         6 ~~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~D~~~   68 (259)
T PRK06125          6 AGKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-----GVDVAVHALDLSS   68 (259)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCCC
Confidence            4567787775 455666665543 235689999998877766655554432     2356666666653

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=91.31  E-value=0.48  Score=30.53  Aligned_cols=23  Identities=17%  Similarity=0.160  Sum_probs=16.3

Q ss_pred             CCCCeEEEecCCCChHHHHHHHH
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADL   37 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~   37 (88)
                      +..-+|.|+||..|..++.+...
T Consensus        15 ~~~~~iaD~GcS~G~Nsl~~~~~   37 (334)
T PF03492_consen   15 PKPFRIADLGCSSGPNSLLAVSN   37 (334)
T ss_dssp             TTEEEEEEES--SSHHHHHHHHH
T ss_pred             CCceEEEecCCCCCccHHHHHHH
Confidence            34458999999999999887554

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=91.20  E-value=2.1  Score=25.77  Aligned_cols=61  Identities=15%  Similarity=0.017  Sum_probs=40.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++++-.| |+|.++..+++.+ ..+.+|+.++-+++.++...+.++..+      .++.++..|+.+
T Consensus        10 ~~k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~   71 (256)
T PRK06124         10 AGQVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG------GAAEALAFDIAD   71 (256)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC------CceEEEEccCCC
Confidence            567788777 4566667666654 246789999998876666555554433      346677777654

>PRK07677 short chain dehydrogenase; Provisional

Probab=91.20  E-value=2.2  Score=25.77  Aligned_cols=59  Identities=15%  Similarity=0.019  Sum_probs=35.0

Q ss_pred             CeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++-.|+ +|.++..+++.+ ..+.+|+.++-++...+...+.+...+      .++.++..|+.+
T Consensus         2 k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~   61 (252)
T PRK07677          2 KVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP------GQVLTVQMDVRN   61 (252)
T ss_pred             CEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEecCCC
Confidence            45666665 444555555543 235688898888776666555554322      356667777654

>KOG2811|consensus

Probab=90.64  E-value=1.3  Score=29.26  Aligned_cols=40  Identities=25%  Similarity=0.422  Sum_probs=28.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEE---EeCCHHHHHH
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTA---VELIPEVLQF   56 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~---~D~~~~~~~~   56 (88)
                      ++..++++|||-|.++.+++..+ +..+++.   +|-...-+.+
T Consensus       182 ~~~~~vEFGAGrg~Ls~~vs~~l-~~~~~~l~vlvdR~s~R~K~  224 (420)
T KOG2811|consen  182 PSSCFVEFGAGRGELSRWVSDCL-QIQNVYLFVLVDRKSSRLKF  224 (420)
T ss_pred             CcceEEEecCCchHHHHHHHHHh-ccccEEEEEeecccchhhhh
Confidence            33689999999999999999998 4445544   6655544433

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=90.52  E-value=2  Score=26.80  Aligned_cols=44  Identities=34%  Similarity=0.482  Sum_probs=33.3

Q ss_pred             CCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +.++.+||..|+| .|..++.+++..  +.++++++.+++..+.+++
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~  207 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE  207 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH
Confidence            5667788887765 467777778875  4679999999988777654

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=90.38  E-value=2  Score=27.82  Aligned_cols=45  Identities=22%  Similarity=0.449  Sum_probs=32.6

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      ...+.+|.-+|+|.......+++.   +.++.++|+++.-+..-+-++
T Consensus        61 ~g~ghrivtigSGGcn~L~ylsr~---Pa~id~VDlN~ahiAln~lkl  105 (414)
T COG5379          61 LGIGHRIVTIGSGGCNMLAYLSRA---PARIDVVDLNPAHIALNRLKL  105 (414)
T ss_pred             cCCCcEEEEecCCcchHHHHhhcC---CceeEEEeCCHHHHHHHHHHH
Confidence            345678999999977776666654   458999999997765544444

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=90.38  E-value=3.4  Score=26.67  Aligned_cols=66  Identities=18%  Similarity=0.134  Sum_probs=43.1

Q ss_pred             CeEEEecCCCChHHHHHHHHh-------------------CCCceEEEEeCCH--HHHHHHHHhhhhcCC---------C
Q psy8023          18 AKVLDIGSGSGYLTACFADLV-------------------GSNGEVTAVELIP--EVLQFTHYNIQQGNP---------E   67 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~-------------------~~~~~v~~~D~~~--~~~~~a~~~~~~~~~---------~   67 (88)
                      .+|+=+|.|.|.-..+++..+                   .+..+++.+|+.+  ..++.....+.....         .
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            589999999998777777665                   1124899999987  345555555443310         0


Q ss_pred             ---CCCCcceEEeeCCccc
Q psy8023          68 ---LLPNIKFEPQTGEGDI   83 (88)
Q Consensus        68 ---~~~~~~~~~~~~d~~~   83 (88)
                         ....-+++|.+.|+..
T Consensus       168 ~~~~~~~~~~~F~~~DvL~  186 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLS  186 (315)
T ss_pred             ccCCccceeeeEEeccccc
Confidence               0123467888888875

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=90.16  E-value=1.5  Score=27.90  Aligned_cols=44  Identities=32%  Similarity=0.440  Sum_probs=32.9

Q ss_pred             CCCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +.++.+|+-.|+|. |..++.+++..  +.+++++|.+++.++.+++
T Consensus       164 ~~~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~  208 (349)
T TIGR03201       164 LKKGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKG  208 (349)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH
Confidence            56788999999853 55666667765  4479999999988877754

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=90.04  E-value=1.3  Score=22.57  Aligned_cols=36  Identities=31%  Similarity=0.474  Sum_probs=22.3

Q ss_pred             CCCeEEEecCCCCh-HHHHHHHHhCCCceEEEEeCCH
Q psy8023          16 PGAKVLDIGSGSGY-LTACFADLVGSNGEVTAVELIP   51 (88)
Q Consensus        16 ~~~~vlD~g~G~G~-~~~~l~~~~~~~~~v~~~D~~~   51 (88)
                      -+++||-+||.+|+ ++..++..++.+...+++-...
T Consensus        38 GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk   74 (78)
T PF12242_consen   38 GPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEK   74 (78)
T ss_dssp             S-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE---
T ss_pred             CCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeecc
Confidence            34799999999998 5556666666677777776543

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=90.04  E-value=2.1  Score=23.71  Aligned_cols=34  Identities=21%  Similarity=0.091  Sum_probs=23.9

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHH
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPE   52 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~   52 (88)
                      ..+|+++|-|.=..........  +..++++|+++.
T Consensus        14 ~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~   47 (129)
T COG1255          14 RGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK   47 (129)
T ss_pred             CCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc
Confidence            3489999988766444434432  467999999985

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=90.03  E-value=1.6  Score=25.48  Aligned_cols=62  Identities=13%  Similarity=0.182  Sum_probs=36.3

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..|+.+|||.=.....+.... ++.+++-+|.- ++++.-++.++..+..  ...+++++..|..+
T Consensus        80 ~qvV~LGaGlDTr~~Rl~~~~-~~~~~~evD~p-~v~~~K~~~l~~~~~~--~~~~~~~v~~Dl~~  141 (183)
T PF04072_consen   80 RQVVNLGAGLDTRAYRLDNPA-GGVRWFEVDLP-EVIALKRRLLPESGAR--PPANYRYVPADLRD  141 (183)
T ss_dssp             SEEEEET-TT--HHHHHHHTT-TTEEEEEEE-H-HHHHHHHHHHHHTHHH--HHEESSEEES-TTS
T ss_pred             cEEEEcCCCCCchHHHhhccc-cceEEEEeCCH-HHHHHHHHHHHhCccc--CCcceeEEeccccc
Confidence            489999999988877777653 35567777764 4666666666654300  01345678887764

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=90.00  E-value=2.1  Score=27.33  Aligned_cols=57  Identities=11%  Similarity=0.078  Sum_probs=37.8

Q ss_pred             ecCCCChHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcce----EEeeCCccc
Q psy8023          23 IGSGSGYLTACFADLVGS--NGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKF----EPQTGEGDI   83 (88)
Q Consensus        23 ~g~G~G~~~~~l~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~d~~~   83 (88)
                      +.-|+|.++..+.+++-.  ..+++.+|.++..+-..++.+....    ...++    ..+.+|+.+
T Consensus         3 VTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~----~~~~v~~~~~~vigDvrd   65 (293)
T PF02719_consen    3 VTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRF----PDPKVRFEIVPVIGDVRD   65 (293)
T ss_dssp             EETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC------TTCEEEEE--CTSCCH
T ss_pred             EEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcc----cccCcccccCceeecccC
Confidence            445889999999887532  3589999999999888888875432    12234    345888765

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=89.69  E-value=0.95  Score=31.59  Aligned_cols=52  Identities=15%  Similarity=0.175  Sum_probs=33.0

Q ss_pred             CeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+|+-+|+|  .++..+++.+. .+.+++.+|.+++.++.+++.    +        ..++.+|+++
T Consensus       401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g--------~~v~~GDat~  453 (621)
T PRK03562        401 PRVIIAGFG--RFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF----G--------MKVFYGDATR  453 (621)
T ss_pred             CcEEEEecC--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc----C--------CeEEEEeCCC
Confidence            456665555  55555555432 245799999999988888652    2        3466666654

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=89.58  E-value=3.3  Score=25.32  Aligned_cols=61  Identities=15%  Similarity=0.083  Sum_probs=42.5

Q ss_pred             CCeEEEecCCCCh--HHHHH--HHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          17 GAKVLDIGSGSGY--LTACF--ADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        17 ~~~vlD~g~G~G~--~~~~l--~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      -+.+++.+|+.|.  +++.|  +.+. .+++++++-.+++.+...++.+...+    ..+.++|+.++..
T Consensus        42 AkliVe~~s~g~~~~ttiaLaaAAr~-TgGR~vCIvp~~~~~~~~~~~l~~~~----~~~~vEfvvg~~~  106 (218)
T PF07279_consen   42 AKLIVEAWSSGGAISTTIALAAAARQ-TGGRHVCIVPDEQSLSEYKKALGEAG----LSDVVEFVVGEAP  106 (218)
T ss_pred             ceEEEEEecCCCchHhHHHHHHHHHh-cCCeEEEEcCChhhHHHHHHHHhhcc----ccccceEEecCCH
Confidence            3478888766543  34444  3332 57899999999988888888887766    3455688888743

The function of this family is unknown.

>KOG1201|consensus

Probab=89.56  E-value=3.4  Score=26.45  Aligned_cols=50  Identities=18%  Similarity=0.142  Sum_probs=34.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      .++.||-=|.|.|.--....+....++++...|++++..+...+.++.++
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g   86 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG   86 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC
Confidence            45678888877776333333333345689999999988888877777643

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=89.42  E-value=1.2  Score=30.93  Aligned_cols=39  Identities=15%  Similarity=0.169  Sum_probs=27.8

Q ss_pred             eEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHH
Q psy8023          19 KVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +|+-  ||.|.++..+++... .+.+++.+|.+++.++.+++
T Consensus       402 ~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~  441 (601)
T PRK03659        402 QVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK  441 (601)
T ss_pred             CEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh
Confidence            4444  566777777766542 34579999999998887765

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=89.33  E-value=1.4  Score=30.21  Aligned_cols=35  Identities=9%  Similarity=0.038  Sum_probs=26.7

Q ss_pred             CCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHH
Q psy8023          25 SGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        25 ~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~   59 (88)
                      ||.|..+..+++.+. .+.+++.+|.+++.++.+++
T Consensus       423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~  458 (558)
T PRK10669        423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE  458 (558)
T ss_pred             ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence            566777777777653 34579999999998888765

>PRK07890 short chain dehydrogenase; Provisional

Probab=89.30  E-value=3.3  Score=24.93  Aligned_cols=61  Identities=15%  Similarity=-0.002  Sum_probs=37.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++++-.|+ +|.++..+++.+ ..+.+|+.++.++...+...+.....+      .++.++..|+.+
T Consensus         4 ~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~   65 (258)
T PRK07890          4 KGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG------RRALAVPTDITD   65 (258)
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC------CceEEEecCCCC
Confidence            4567776664 556666666543 346689999988876655555444322      345666766654

>PLN02427 UDP-apiose/xylose synthase

Probab=89.29  E-value=2.2  Score=27.60  Aligned_cols=62  Identities=5%  Similarity=-0.007  Sum_probs=38.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGS--NGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++|| +--|+|+++..+++.+-.  ..+|+++|.+............. .    ...+++++.+|+.+
T Consensus        13 ~~~~Vl-VTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~-~----~~~~~~~~~~Dl~d   76 (386)
T PLN02427         13 KPLTIC-MIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTV-P----WSGRIQFHRINIKH   76 (386)
T ss_pred             cCcEEE-EECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccc-c----CCCCeEEEEcCCCC
Confidence            345777 555899999999887643  25899999765433222111000 0    12468888888865

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=89.28  E-value=3.8  Score=25.71  Aligned_cols=63  Identities=16%  Similarity=0.094  Sum_probs=36.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++++|-.| |+|+++..+++.+. .+.+|+++..++...+.........+    ...+++++.+|+.+
T Consensus         4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~d   67 (325)
T PLN02989          4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDG----AKERLKLFKADLLD   67 (325)
T ss_pred             CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccC----CCCceEEEeCCCCC
Confidence            456777666 67888888887653 34578777665543332222211111    12467778888765

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.14  E-value=3.3  Score=24.73  Aligned_cols=60  Identities=10%  Similarity=0.073  Sum_probs=36.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      ++++++-.|+ +|.++..+++.+ ..+.+++.++.++..++.+.+.+...+      .++.++..|+.
T Consensus         4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~   64 (253)
T PRK08217          4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG------TEVRGYAANVT   64 (253)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEcCCC
Confidence            3567887775 455566665543 235689999998876666555554422      34556666654

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=88.99  E-value=3.6  Score=25.03  Aligned_cols=61  Identities=10%  Similarity=0.004  Sum_probs=38.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++++-.|++. .++..+++++ ..+.+++.++-+++.++...+.++..+      .++.++..|+.+
T Consensus         9 ~~k~~lItGa~~-~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~   70 (265)
T PRK07097          9 KGKIALITGASY-GIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG------IEAHGYVCDVTD   70 (265)
T ss_pred             CCCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC------CceEEEEcCCCC
Confidence            456777777664 4455554443 245689888988877776666665432      356777777764

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=88.98  E-value=2  Score=27.36  Aligned_cols=44  Identities=23%  Similarity=0.419  Sum_probs=30.7

Q ss_pred             CCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          15 KPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        15 ~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .++.+|+-.|+| .|..++.+++..+ ..+++++|.+++.++.+++
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~  212 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE  212 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH
Confidence            467788888865 4445555666642 2369999999988888876

>KOG1099|consensus

Probab=88.96  E-value=0.75  Score=28.59  Aligned_cols=35  Identities=20%  Similarity=0.362  Sum_probs=28.0

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCC----C----ceEEEEeCCH
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGS----N----GEVTAVELIP   51 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~----~----~~v~~~D~~~   51 (88)
                      -.+++|+|+..|.++..+.+++-.    .    .+++++|+.+
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~   84 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP   84 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc
Confidence            468999999999999999887533    1    1399999876

>PRK07035 short chain dehydrogenase; Provisional

Probab=88.93  E-value=3.5  Score=24.78  Aligned_cols=61  Identities=16%  Similarity=0.024  Sum_probs=36.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++++-.|++ |.++..+++.+ ..+.+|+.++.++...+...+.+...+      .++.++..|..+
T Consensus         7 ~~k~vlItGas-~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~   68 (252)
T PRK07035          7 TGKIALVTGAS-RGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG------GKAEALACHIGE   68 (252)
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEEcCCCC
Confidence            34567777755 55555555543 235689999998876666555554332      234555555543

>PRK05854 short chain dehydrogenase; Provisional

Probab=88.91  E-value=4.2  Score=25.67  Aligned_cols=63  Identities=16%  Similarity=0.083  Sum_probs=39.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+++++-.|+ +++++..+++.+. .+.+|+.+.-+++..+.+.+.+....    ...++.++..|+.+
T Consensus        13 ~gk~~lITGa-s~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~----~~~~v~~~~~Dl~d   76 (313)
T PRK05854         13 SGKRAVVTGA-SDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAV----PDAKLSLRALDLSS   76 (313)
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC----CCCceEEEEecCCC
Confidence            3556665565 5666667666543 46689999888876666655554322    13457777777754

>PRK06194 hypothetical protein; Provisional

Probab=88.78  E-value=3.9  Score=25.13  Aligned_cols=60  Identities=8%  Similarity=0.056  Sum_probs=38.2

Q ss_pred             CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++|-.| |+|+++..+++.+. .+.+|+.+|.+++.++...+.....+      .++.++.+|+.+
T Consensus         6 ~k~vlVtG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~d   66 (287)
T PRK06194          6 GKVAVITG-AASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG------AEVLGVRTDVSD   66 (287)
T ss_pred             CCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC------CeEEEEECCCCC
Confidence            45677555 56777777776543 45689999988766655544443322      356777777764

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=88.76  E-value=3  Score=27.36  Aligned_cols=46  Identities=28%  Similarity=0.432  Sum_probs=35.0

Q ss_pred             CCCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          14 LKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        14 ~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      ++++..+.-+|||. |.-.+.-+... ...+++++|+++.-++.|++.
T Consensus       183 v~~G~tvaV~GlGgVGlaaI~gA~~a-gA~~IiAvD~~~~Kl~~A~~f  229 (366)
T COG1062         183 VEPGDTVAVFGLGGVGLAAIQGAKAA-GAGRIIAVDINPEKLELAKKF  229 (366)
T ss_pred             CCCCCeEEEEeccHhHHHHHHHHHHc-CCceEEEEeCCHHHHHHHHhc
Confidence            67888999999874 44444444443 567899999999999988875

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=88.73  E-value=2.6  Score=25.26  Aligned_cols=43  Identities=33%  Similarity=0.501  Sum_probs=32.8

Q ss_pred             CCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          15 KPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        15 ~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .++.+|+..|+|. |.....+++..  +.++++++.++...+.+++
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~  176 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKE  176 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH
Confidence            6778999999885 66666677765  4689999999877766654

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK07454 short chain dehydrogenase; Provisional

Probab=88.73  E-value=3.5  Score=24.58  Aligned_cols=61  Identities=11%  Similarity=0.032  Sum_probs=40.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++++-.| |+|.++..+++.+. .+.+|+.++.++...+...+..+..      ..++.++.+|+.+
T Consensus         5 ~~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~   66 (241)
T PRK07454          5 SMPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST------GVKAAAYSIDLSN   66 (241)
T ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC------CCcEEEEEccCCC
Confidence            445677777 46777777766542 4568999999887665555544432      2457777888765

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=88.66  E-value=3.7  Score=24.66  Aligned_cols=60  Identities=12%  Similarity=-0.059  Sum_probs=38.5

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG   81 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (88)
                      ++++++-.| |+|.++..+++.+. .+.+|++++.++...+...+.+...+     ..++.++..|+
T Consensus        11 ~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~d~   71 (247)
T PRK08945         11 KDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG-----GPQPAIIPLDL   71 (247)
T ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC-----CCCceEEEecc
Confidence            566788777 56777777766543 35589999998877666555554433     23445555554

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=88.65  E-value=0.92  Score=24.47  Aligned_cols=33  Identities=24%  Similarity=0.350  Sum_probs=27.5

Q ss_pred             CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          26 GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        26 G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      |.|..++.+++..+  .+++++|.++.-.+.+++.
T Consensus         1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~   33 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKEL   33 (130)
T ss_dssp             HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhh
Confidence            45788889999874  7999999999988888774

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK09186 flagellin modification protein A; Provisional

Probab=88.62  E-value=3.7  Score=24.67  Aligned_cols=63  Identities=16%  Similarity=0.144  Sum_probs=38.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++++-.|+ +|.++..+++.+. .+.+++.++.+++.++...+.+....    ....+.++..|+.+
T Consensus         3 ~~k~vlItGa-s~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dl~d   66 (256)
T PRK09186          3 KGKTILITGA-GGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEF----KSKKLSLVELDITD   66 (256)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhc----CCCceeEEEecCCC
Confidence            3567777775 4556666666542 35689999888877666655553321    12345666777664

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=88.52  E-value=2.3  Score=27.40  Aligned_cols=44  Identities=18%  Similarity=0.325  Sum_probs=31.6

Q ss_pred             CCCCCeEEEecCC-CChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGSG-SGYLTACFADLVGSNG-EVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~   59 (88)
                      +.++.+|+-.|+| .|..++.+++..  +. +|+++|.+++..+.+++
T Consensus       183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~--G~~~Vi~~~~~~~~~~~a~~  228 (368)
T TIGR02818       183 VEEGDTVAVFGLGGIGLSVIQGARMA--KASRIIAIDINPAKFELAKK  228 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence            5678889888875 344555566665  44 79999999988777754

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PLN02780 ketoreductase/ oxidoreductase

Probab=88.49  E-value=4.7  Score=25.68  Aligned_cols=61  Identities=16%  Similarity=0.102  Sum_probs=37.9

Q ss_pred             CCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      ++.++-.|+ +|+++..+++.+ ..+.+|+.++.+++.++...+.+....    ...++..+..|..
T Consensus        53 g~~~lITGA-s~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~----~~~~~~~~~~Dl~  114 (320)
T PLN02780         53 GSWALVTGP-TDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKY----SKTQIKTVVVDFS  114 (320)
T ss_pred             CCEEEEeCC-CcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC----CCcEEEEEEEECC
Confidence            567777774 566666666654 345689999999988777666554322    1234555555554

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=88.46  E-value=4.3  Score=25.26  Aligned_cols=67  Identities=10%  Similarity=0.037  Sum_probs=39.5

Q ss_pred             CCeEEEecCCCChHHHHHHHHh---C-CCceEEEEeCCH--------------------------HHHHHHHHhhhhcCC
Q psy8023          17 GAKVLDIGSGSGYLTACFADLV---G-SNGEVTAVELIP--------------------------EVLQFTHYNIQQGNP   66 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~---~-~~~~v~~~D~~~--------------------------~~~~~a~~~~~~~~~   66 (88)
                      +..|+|.||-.|..++.++...   + ++-++++.|.-+                          ...+..++++.+++ 
T Consensus        75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g-  153 (248)
T PF05711_consen   75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG-  153 (248)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT-
T ss_pred             CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC-
Confidence            3479999999999887765432   1 234688888411                          13455566665554 


Q ss_pred             CCCCCcceEEeeCCcccccc
Q psy8023          67 ELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        67 ~~~~~~~~~~~~~d~~~~~~   86 (88)
                        ....++.++.|+..+.+|
T Consensus       154 --l~~~~v~~vkG~F~dTLp  171 (248)
T PF05711_consen  154 --LLDDNVRFVKGWFPDTLP  171 (248)
T ss_dssp             --TSSTTEEEEES-HHHHCC
T ss_pred             --CCcccEEEECCcchhhhc
Confidence              235689999998876655

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PLN02740 Alcohol dehydrogenase-like

Probab=88.43  E-value=3.3  Score=26.83  Aligned_cols=45  Identities=24%  Similarity=0.306  Sum_probs=31.4

Q ss_pred             cCCCCCeEEEecCC-CChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPGAKVLDIGSG-SGYLTACFADLVGSNG-EVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~   59 (88)
                      .+.++.+|+-+|+| .|..++.+++..  +. +|+++|.+++.++.+++
T Consensus       195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a~~  241 (381)
T PLN02740        195 NVQAGSSVAIFGLGAVGLAVAEGARAR--GASKIIGVDINPEKFEKGKE  241 (381)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCCcEEEEcCChHHHHHHHH
Confidence            35678899988864 333445555654  34 69999999988887755

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=88.37  E-value=1.2  Score=29.35  Aligned_cols=35  Identities=26%  Similarity=0.492  Sum_probs=24.7

Q ss_pred             CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          26 GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        26 G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      |.|+.+..++..+..+.+|+++|++++.++..++.
T Consensus         7 GlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g   41 (388)
T PRK15057          7 GTGYVGLSNGLLIAQNHEVVALDILPSRVAMLNDR   41 (388)
T ss_pred             CCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcC
Confidence            55555555555443456799999999998888763

>PRK06914 short chain dehydrogenase; Provisional

Probab=88.36  E-value=4.1  Score=24.92  Aligned_cols=62  Identities=15%  Similarity=-0.110  Sum_probs=37.8

Q ss_pred             CCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++.+|-.| |+|.++..+++.+ ..+.+|++++-+++..+...+.....+    ...++.++..|+.+
T Consensus         3 ~k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~d   65 (280)
T PRK06914          3 KKIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLN----LQQNIKVQQLDVTD   65 (280)
T ss_pred             CCEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC----CCCceeEEecCCCC
Confidence            34566666 5556666665543 345689999888766655554444322    23467777777765

>PRK05866 short chain dehydrogenase; Provisional

Probab=88.24  E-value=4.6  Score=25.26  Aligned_cols=60  Identities=17%  Similarity=0.106  Sum_probs=38.1

Q ss_pred             CCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++-.|+ +|+++..+++.+ ..+.+|+.++-+++.++...+.+...+      .++.++..|+.+
T Consensus        40 ~k~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~------~~~~~~~~Dl~d  100 (293)
T PRK05866         40 GKRILLTGA-SSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG------GDAMAVPCDLSD  100 (293)
T ss_pred             CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCCC
Confidence            356776665 566667766654 245689999999877766655554322      245666777654

>KOG3924|consensus

Probab=88.07  E-value=0.92  Score=30.10  Aligned_cols=39  Identities=26%  Similarity=0.434  Sum_probs=30.6

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHH
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEV   53 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~   53 (88)
                      +.++....|+|+|.|....+.+... ....-+|+++....
T Consensus       190 ~g~~D~F~DLGSGVGqlv~~~aa~a-~~k~svG~eim~~p  228 (419)
T KOG3924|consen  190 LGPADVFMDLGSGVGQLVCFVAAYA-GCKKSVGFEIMDKP  228 (419)
T ss_pred             cCCCCcccCCCcccchhhHHHHHhh-ccccccceeeecCc
Confidence            4677899999999999988888875 45567888875533

>PRK06139 short chain dehydrogenase; Provisional

Probab=87.83  E-value=5.3  Score=25.58  Aligned_cols=61  Identities=15%  Similarity=0.014  Sum_probs=38.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++++-.|+ +|.++..+++.+ ..+.+|+.++-+++.++...+.++..+      .++.++..|+.+
T Consensus         6 ~~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g------~~~~~~~~Dv~d   67 (330)
T PRK06139          6 HGAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG------AEVLVVPTDVTD   67 (330)
T ss_pred             CCCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCC
Confidence            4566776665 455556665543 246689999999888777766665543      345566666653

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=87.82  E-value=4.3  Score=24.48  Aligned_cols=61  Identities=15%  Similarity=0.088  Sum_probs=40.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|.++..+++.+. .+.+|+.++-++..++...+.++..+      .++.++..|+.+
T Consensus         9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~------~~~~~~~~D~~~   70 (255)
T PRK07523          9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG------LSAHALAFDVTD   70 (255)
T ss_pred             CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC------ceEEEEEccCCC
Confidence            467888777 56777777777543 45689999998877666555554432      345666666654

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=87.77  E-value=3.1  Score=24.32  Aligned_cols=43  Identities=26%  Similarity=0.162  Sum_probs=26.6

Q ss_pred             EEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhh
Q psy8023          20 VLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ   63 (88)
Q Consensus        20 vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~   63 (88)
                      |--+|+|+=+-++...-.. .+.+|+.+|.+++.++.+++.++.
T Consensus         2 V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~~l~~~~~~i~~   44 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFAR-AGYEVTLYDRSPEALERARKRIER   44 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHH-TTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred             EEEEcCCHHHHHHHHHHHh-CCCcEEEEECChHHHHhhhhHHHH
Confidence            4456776433333333332 366899999999999888777654

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=87.69  E-value=2.9  Score=26.54  Aligned_cols=46  Identities=24%  Similarity=0.159  Sum_probs=32.8

Q ss_pred             cCCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          13 NLKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        13 ~~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      .+.++.+||-.|+| .|..+..+++..  +.++++++.+++-.+.+++.
T Consensus       162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~~  208 (329)
T TIGR02822       162 SLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALAL  208 (329)
T ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHh
Confidence            35678899988864 344555566664  45799999998887777663

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK07109 short chain dehydrogenase; Provisional

Probab=87.62  E-value=5.5  Score=25.48  Aligned_cols=61  Identities=13%  Similarity=-0.041  Sum_probs=39.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++++-.| |+|.++..+++.+ ..+.+|+.++-+++.++...+.++..+      .++.++..|+.+
T Consensus         7 ~~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g------~~~~~v~~Dv~d   68 (334)
T PRK07109          7 GRQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG------GEALAVVADVAD   68 (334)
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC------CcEEEEEecCCC
Confidence            345666666 5566666666654 245689999998877776666665433      356677777654

>PRK05876 short chain dehydrogenase; Provisional

Probab=87.59  E-value=4.9  Score=24.84  Aligned_cols=61  Identities=8%  Similarity=0.036  Sum_probs=38.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.|+ +|.++..+++.+. .+.+|+.++.++..++...+.++..+      .++.++..|+.+
T Consensus         5 ~~k~vlVTGa-s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~------~~~~~~~~Dv~d   66 (275)
T PRK05876          5 PGRGAVITGG-ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG------FDVHGVMCDVRH   66 (275)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEeCCCCC
Confidence            4566776665 4666666666542 35689999988876665555544322      346667777654

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=87.54  E-value=3.4  Score=25.81  Aligned_cols=62  Identities=18%  Similarity=0.098  Sum_probs=35.7

Q ss_pred             CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++||-.| |+|+++..+++++- .+.+|++++.++..............    ...+++++.+|+.+
T Consensus         4 ~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~   66 (322)
T PLN02662          4 GKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDG----AKERLHLFKANLLE   66 (322)
T ss_pred             CCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccC----CCCceEEEeccccC
Confidence            45666555 57898888887753 34578887766533222222111111    12467788888765

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=87.38  E-value=2.4  Score=28.34  Aligned_cols=43  Identities=19%  Similarity=0.057  Sum_probs=31.4

Q ss_pred             CCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          15 KPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        15 ~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      -++++|+-+|+|. |......++..  +.+|+.+|.++.....|++
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~  243 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAM  243 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHh
Confidence            4688999999994 44555555554  4589999999877766654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=87.38  E-value=5.7  Score=25.40  Aligned_cols=62  Identities=11%  Similarity=0.031  Sum_probs=38.7

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      -+.+++||-.| |+|+++..+++.+. .+.+|++++-++...+........       ..+++++.+|+.+
T Consensus         7 ~~~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~   69 (353)
T PLN02896          7 ESATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE-------GDRLRLFRADLQE   69 (353)
T ss_pred             ccCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc-------CCeEEEEECCCCC
Confidence            35677888777 57899998888653 345888887766433322221111       2357777777664

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=87.29  E-value=4.7  Score=24.35  Aligned_cols=61  Identities=11%  Similarity=-0.021  Sum_probs=37.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.|+ +|.++..+++.+ ..+.+++.++-++...+...+.++..+      .++.++..|+.+
T Consensus        10 ~~k~vlVtG~-s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~   71 (255)
T PRK06113         10 DGKCAIITGA-GAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG------GQAFACRCDITS   71 (255)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCCC
Confidence            4678888884 455555555543 345678888887776665555444322      245566666654

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.28  E-value=4.4  Score=24.04  Aligned_cols=60  Identities=17%  Similarity=0.057  Sum_probs=37.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++++-.|++ |.++..+++.+ ..+.+|++++-+++..+...+.....       .++.++..|..+
T Consensus         4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~Dl~~   64 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY-------GNIHYVVGDVSS   64 (238)
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCeEEEECCCCC
Confidence            35678888864 66666666654 34668999999887665554443322       245666666653

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=86.90  E-value=4.8  Score=24.05  Aligned_cols=60  Identities=12%  Similarity=0.086  Sum_probs=37.8

Q ss_pred             CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++.+|-.| |+|.++..+++.+. .+.+|+.++.++...+...+.+...+      .++.++..|+.+
T Consensus         3 ~~~ilItG-as~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~d~~~   63 (250)
T TIGR03206         3 DKTAIVTG-GGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG------GNAQAFACDITD   63 (250)
T ss_pred             CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC------CcEEEEEcCCCC
Confidence            45667666 45677777766543 34589999988876665555554322      356677777654

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PLN02540 methylenetetrahydrofolate reductase

Probab=86.88  E-value=7.4  Score=27.22  Aligned_cols=73  Identities=18%  Similarity=0.156  Sum_probs=50.3

Q ss_pred             HHHHHhhcCCCCCeEEEecCCCCh----HHHHHHHHhC------CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceE
Q psy8023           6 ALELLKDNLKPGAKVLDIGSGSGY----LTACFADLVG------SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFE   75 (88)
Q Consensus         6 ~~~~~~~~~~~~~~vlD~g~G~G~----~~~~l~~~~~------~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~   75 (88)
                      +...+.....-+...+++.-|.|+    .++.++....      +-.|+++.|.+...++.....+...+     ..++=
T Consensus        17 L~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a~~~G-----IrNIL   91 (565)
T PLN02540         17 LFERMDRMVAHGPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETIKSNG-----IQNIL   91 (565)
T ss_pred             HHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCC-----CCEEE
Confidence            344444333445678888888775    3444444332      23589999999999999998888888     77888


Q ss_pred             EeeCCccc
Q psy8023          76 PQTGEGDI   83 (88)
Q Consensus        76 ~~~~d~~~   83 (88)
                      .+.||.-.
T Consensus        92 ALrGDpp~   99 (565)
T PLN02540         92 ALRGDPPH   99 (565)
T ss_pred             EECCCCCC
Confidence            88888653

>PRK08703 short chain dehydrogenase; Provisional

Probab=86.66  E-value=4.9  Score=23.96  Aligned_cols=47  Identities=19%  Similarity=0.098  Sum_probs=31.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhh
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQ   63 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~   63 (88)
                      ++++++-.|+ +|.++..+++.+. .+.+|+.++-++...+...+.+..
T Consensus         5 ~~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~   52 (239)
T PRK08703          5 SDKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVE   52 (239)
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHH
Confidence            4567888884 5666666666542 456899999888766655554433

>PRK08251 short chain dehydrogenase; Provisional

Probab=86.58  E-value=5  Score=23.99  Aligned_cols=61  Identities=18%  Similarity=0.120  Sum_probs=39.3

Q ss_pred             CeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++-.| |+|.++..+++.+. .+.+++.++-++...+...+......    ...++.+...|+.+
T Consensus         3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~   64 (248)
T PRK08251          3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARY----PGIKVAVAALDVND   64 (248)
T ss_pred             CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC----CCceEEEEEcCCCC
Confidence            4567666 56777777777653 34589999988877666555444322    13467777777764

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=86.46  E-value=0.84  Score=30.40  Aligned_cols=39  Identities=21%  Similarity=0.229  Sum_probs=25.0

Q ss_pred             CeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHH
Q psy8023          18 AKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTH   58 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~   58 (88)
                      .+|--+|  .|+.++.++-.+. .+.+|+|+|+++..++..+
T Consensus        10 ~~I~ViG--LGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln   49 (436)
T COG0677          10 ATIGVIG--LGYVGLPLAAAFASAGFKVIGVDINQKKVDKLN   49 (436)
T ss_pred             eEEEEEc--cccccHHHHHHHHHcCCceEeEeCCHHHHHHHh
Confidence            4454444  5566555555443 3468999999998876553

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=86.37  E-value=4.9  Score=23.67  Aligned_cols=39  Identities=23%  Similarity=0.318  Sum_probs=21.1

Q ss_pred             eEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHH
Q psy8023          19 KVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +|--+|.  |+.+..++..+. .+.+|+++|++++.++..++
T Consensus         2 ~I~ViGl--GyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~   41 (185)
T PF03721_consen    2 KIAVIGL--GYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN   41 (185)
T ss_dssp             EEEEE----STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT
T ss_pred             EEEEECC--CcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh
Confidence            3444544  444444444332 34689999999988776654

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK07478 short chain dehydrogenase; Provisional

Probab=86.23  E-value=5.4  Score=24.02  Aligned_cols=61  Identities=13%  Similarity=0.033  Sum_probs=37.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++++-.|++ |.++..+++.+. .+.+|+.++-++..++...+.+...+      .++.++..|+.+
T Consensus         5 ~~k~~lItGas-~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~   66 (254)
T PRK07478          5 NGKVAIITGAS-SGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG------GEAVALAGDVRD   66 (254)
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEcCCCC
Confidence            34567766554 556666655542 35689999988877766665555432      345666666654

>PRK07814 short chain dehydrogenase; Provisional

Probab=86.19  E-value=5.7  Score=24.18  Aligned_cols=61  Identities=11%  Similarity=0.000  Sum_probs=39.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+ ..+.+|+.++.+++.++...+.+...+      .++.++..|..+
T Consensus         9 ~~~~vlItG-asggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~   70 (263)
T PRK07814          9 DDQVAVVTG-AGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG------RRAHVVAADLAH   70 (263)
T ss_pred             CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCCC
Confidence            456777777 5677777777654 346689999998876665555544322      346666666554

>PRK07831 short chain dehydrogenase; Provisional

Probab=86.17  E-value=5.6  Score=24.12  Aligned_cols=64  Identities=13%  Similarity=0.002  Sum_probs=38.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++++-.|+....++..+++.+ ..+.+|+.+|.++..++...+.++...    ...++.++..|+.+
T Consensus        16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~   80 (262)
T PRK07831         16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAEL----GLGRVEAVVCDVTS   80 (262)
T ss_pred             CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhc----CCceEEEEEccCCC
Confidence            45677777753223444444433 235679999988877776666555421    12457777777654

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=86.15  E-value=1.9  Score=28.75  Aligned_cols=40  Identities=20%  Similarity=0.234  Sum_probs=30.0

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTH   58 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~   58 (88)
                      .++|--+  |.|+.+..++..+....+|+++|++++.++..+
T Consensus         6 ~mkI~vI--GlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~   45 (425)
T PRK15182          6 EVKIAII--GLGYVGLPLAVEFGKSRQVVGFDVNKKRILELK   45 (425)
T ss_pred             CCeEEEE--CcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence            3455555  567777777777656678999999999888776

>KOG2798|consensus

Probab=85.96  E-value=1.6  Score=28.29  Aligned_cols=46  Identities=24%  Similarity=0.194  Sum_probs=33.2

Q ss_pred             HHHHHhhcCCC------CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHH
Q psy8023           6 ALELLKDNLKP------GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVL   54 (88)
Q Consensus         6 ~~~~~~~~~~~------~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~   54 (88)
                      +++.+....++      +.+||--|||.|.++..++... .  ++-|-|.|--|+
T Consensus       134 ii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G-~--~~qGNEfSy~Ml  185 (369)
T KOG2798|consen  134 IIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLG-F--KCQGNEFSYFML  185 (369)
T ss_pred             HHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhc-c--cccccHHHHHHH
Confidence            45555555544      5689999999999999999884 4  355557777664

>PRK06949 short chain dehydrogenase; Provisional

Probab=85.77  E-value=5.7  Score=23.87  Aligned_cols=61  Identities=20%  Similarity=0.090  Sum_probs=40.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++++-.| |+|.++..+++.+. .+.+|++++.+++.++...+.....+      .++.++..|+.+
T Consensus         8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~   69 (258)
T PRK06949          8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG------GAAHVVSLDVTD   69 (258)
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEecCCC
Confidence            456777777 66777777777653 35589999998877766655544322      345666666653

>PRK06181 short chain dehydrogenase; Provisional

Probab=85.65  E-value=6  Score=23.95  Aligned_cols=59  Identities=8%  Similarity=-0.072  Sum_probs=36.6

Q ss_pred             CeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++|-.| |+|.++..+++.+ ..+.+|++++.++...+...+.+...+      .++.+...|..+
T Consensus         2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~   61 (263)
T PRK06181          2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG------GEALVVPTDVSD   61 (263)
T ss_pred             CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCCC
Confidence            3456555 5566777766543 345689999998866665555444332      356667777654

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=85.65  E-value=3.7  Score=26.46  Aligned_cols=44  Identities=27%  Similarity=0.359  Sum_probs=30.7

Q ss_pred             CCCCCeEEEecCC-CChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGSG-SGYLTACFADLVGSNG-EVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~   59 (88)
                      +.++.+|+-.|+| .|..+..+++..  +. +|+++|.+++..+.+++
T Consensus       189 i~~g~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~  234 (371)
T cd08281         189 VRPGQSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARE  234 (371)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHH
Confidence            5677888888864 344455556654  44 69999999988887765

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=85.51  E-value=6.8  Score=25.08  Aligned_cols=65  Identities=12%  Similarity=0.056  Sum_probs=37.5

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhh-hhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNI-QQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++|+-.| |+|+++..+.+.+- .+.+|+++|............. ...+  .....+++++.+|+.+
T Consensus        14 ~~~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Di~d   80 (348)
T PRK15181         14 APKRWLITG-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVS--EEQWSRFIFIQGDIRK   80 (348)
T ss_pred             cCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccc--cccCCceEEEEccCCC
Confidence            446776555 78999998888763 3458999997543211111111 1111  0013467888888875

>PRK06197 short chain dehydrogenase; Provisional

Probab=85.46  E-value=6.8  Score=24.47  Aligned_cols=63  Identities=13%  Similarity=-0.009  Sum_probs=39.2

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+++++-.| |+|+++..+++.+. .+.+++.++-+++..+.+.+.+....    ...++.++..|+.+
T Consensus        15 ~~k~vlItG-as~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dl~d   78 (306)
T PRK06197         15 SGRVAVVTG-ANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAAT----PGADVTLQELDLTS   78 (306)
T ss_pred             CCCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC----CCCceEEEECCCCC
Confidence            355677555 56777777776543 35588888888776665555444321    12456777777764

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=85.35  E-value=6.2  Score=23.86  Aligned_cols=61  Identities=20%  Similarity=0.119  Sum_probs=41.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|.++..+++.+. .+.+|+.++-++..++...+.+...+      .++.++..|+.+
T Consensus        11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~------~~~~~~~~Dl~d   72 (259)
T PRK08213         11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG------IDALWIAADVAD   72 (259)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEEccCCC
Confidence            456788777 67788888877653 35689999988877666665554322      356667777664

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=85.33  E-value=3.6  Score=25.44  Aligned_cols=43  Identities=26%  Similarity=0.356  Sum_probs=29.0

Q ss_pred             CCCCeEEEecCC-CChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023          15 KPGAKVLDIGSG-SGYLTACFADLVGSNG-EVTAVELIPEVLQFTHY   59 (88)
Q Consensus        15 ~~~~~vlD~g~G-~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~   59 (88)
                      .++.+|+-+|+| .|..+..+++..  +. +++++|.+++..+.+++
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~--G~~~Vi~~~~~~~r~~~a~~  163 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAA--GAARVVAADPSPDRRELALS  163 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence            467788888764 344445556654  33 48899988877776655

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>KOG1562|consensus

Probab=85.31  E-value=1.6  Score=28.12  Aligned_cols=68  Identities=18%  Similarity=0.147  Sum_probs=53.0

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+..+.++-+|-|-|........+ +.-.++..+|++...++..++.+...... ....++.++.||...
T Consensus       119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~g-y~~~~v~l~iGDG~~  186 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACG-YEGKKVKLLIGDGFL  186 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcc-cCCCceEEEeccHHH
Confidence            345678999999999988777776 45668999999999999999998765422 235688888888654

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=85.26  E-value=6.5  Score=24.06  Aligned_cols=61  Identities=15%  Similarity=0.102  Sum_probs=37.2

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++++-.|++ |.++..+++.+ ..+.+|+.++.+++..+...+.+...+      .++.++..|+.+
T Consensus         9 ~~k~vlVtGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~   70 (278)
T PRK08277          9 KGKVAVITGGG-GVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG------GEALAVKADVLD   70 (278)
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEECCCCC
Confidence            45566666654 55566665554 245689999998876665555544322      346666777654

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=85.22  E-value=5.4  Score=25.17  Aligned_cols=44  Identities=27%  Similarity=0.388  Sum_probs=29.9

Q ss_pred             CCCCCeEEEecCC-CChHHHHHHHHhCCCce-EEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGSG-SGYLTACFADLVGSNGE-VTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~   59 (88)
                      +.++.+|+-.|+| .|..+..+++..  +.+ +++++.+++..+.+++
T Consensus       161 ~~~g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~  206 (339)
T cd08239         161 VSGRDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKA  206 (339)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence            4567888888764 333445566665  445 9999998887777654

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK08643 acetoin reductase; Validated

Probab=84.99  E-value=6.4  Score=23.71  Aligned_cols=59  Identities=14%  Similarity=-0.004  Sum_probs=36.7

Q ss_pred             CeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++-.| |+|.++..+++.+. .+.+|+.++.++...+...+.+...+      .++.++..|+.+
T Consensus         3 k~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~   62 (256)
T PRK08643          3 KVALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG------GKAIAVKADVSD   62 (256)
T ss_pred             CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEECCCCC
Confidence            4556555 55666676666542 45689999988876666655554322      346666777654

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=84.99  E-value=6.5  Score=23.82  Aligned_cols=56  Identities=13%  Similarity=-0.034  Sum_probs=33.5

Q ss_pred             eEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          19 KVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      ++|-.|++ |.++..+++.+ ..+.+|+.++.++..++.+.+.+...       .++.++..|+.
T Consensus         2 ~vlItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-------~~~~~~~~Dv~   58 (259)
T PRK08340          2 NVLVTASS-RGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY-------GEVYAVKADLS   58 (259)
T ss_pred             eEEEEcCC-cHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------CCceEEEcCCC
Confidence            45666644 55666666554 24568888888887766665555432       13455566654

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=84.91  E-value=0.99  Score=27.53  Aligned_cols=43  Identities=23%  Similarity=0.280  Sum_probs=27.1

Q ss_pred             HHHHHHhhcCC------CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023           5 RALELLKDNLK------PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP   51 (88)
Q Consensus         5 ~~~~~~~~~~~------~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~   51 (88)
                      .+++|+.....      ...++|||||=.......-...+    .|+.+|+++
T Consensus        34 ~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~f----dvt~IDLns   82 (219)
T PF11968_consen   34 WLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWF----DVTRIDLNS   82 (219)
T ss_pred             HHHHHhhhhccccccccccceEEeecccCCCCcccccCce----eeEEeecCC
Confidence            35566655331      12489999998666544433333    499999987

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=84.87  E-value=4.1  Score=26.07  Aligned_cols=44  Identities=27%  Similarity=0.364  Sum_probs=30.9

Q ss_pred             CCCCCeEEEecCC-CChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGSG-SGYLTACFADLVGSNG-EVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~   59 (88)
                      +.++.+||-.|+| .|..++.+++..  +. +++++|.+++..+.+++
T Consensus       174 ~~~g~~VlV~G~g~vG~~a~~~ak~~--G~~~Vi~~~~~~~~~~~~~~  219 (358)
T TIGR03451       174 VKRGDSVAVIGCGGVGDAAIAGAALA--GASKIIAVDIDDRKLEWARE  219 (358)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence            5678889888864 344455566664  34 59999999988777754

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK08862 short chain dehydrogenase; Provisional

Probab=84.81  E-value=6.5  Score=23.63  Aligned_cols=47  Identities=11%  Similarity=-0.021  Sum_probs=30.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhh
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQ   63 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~   63 (88)
                      ++++++-.|++.|. +..++..+ ..+.+|+.++-+++.++...+.+..
T Consensus         4 ~~k~~lVtGas~GI-G~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~   51 (227)
T PRK08862          4 KSSIILITSAGSVL-GRTISCHFARLGATLILCDQDQSALKDTYEQCSA   51 (227)
T ss_pred             CCeEEEEECCccHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            45678877777655 44444433 3566899998888877766665544

>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=84.79  E-value=0.65  Score=29.24  Aligned_cols=47  Identities=15%  Similarity=0.256  Sum_probs=38.5

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHH
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ   55 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~   55 (88)
                      .++..+..+++++.+.+|-.+|.|.+.+.+...    .+++.-|+++.++.
T Consensus        14 ~l~~~i~~~lP~~~~y~EPF~GggaV~i~~~~~----~~~i~~Din~~Lvn   60 (274)
T COG0338          14 KLLDQIIPHLPEGVSYIEPFVGGGAVFINLAAK----KKYILNDINPDLVN   60 (274)
T ss_pred             HHHHHHHHhCCCCceeeCCccCcceeeeehhhh----hhhhHhcCCHHHHH
Confidence            466777777787679999999999998888775    25999999998864

>PRK08589 short chain dehydrogenase; Validated

Probab=84.78  E-value=7  Score=23.98  Aligned_cols=60  Identities=13%  Similarity=-0.015  Sum_probs=33.9

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.|++ |.++..+++.+ ..+.+|+.++.++ .++...+.++..+      .++.++..|+.+
T Consensus         5 ~~k~vlItGas-~gIG~aia~~l~~~G~~vi~~~r~~-~~~~~~~~~~~~~------~~~~~~~~Dl~~   65 (272)
T PRK08589          5 ENKVAVITGAS-TGIGQASAIALAQEGAYVLAVDIAE-AVSETVDKIKSNG------GKAKAYHVDISD   65 (272)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCcH-HHHHHHHHHHhcC------CeEEEEEeecCC
Confidence            35567766654 45556665544 2466899998884 4444444343322      345666666654

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=84.66  E-value=6.4  Score=26.21  Aligned_cols=42  Identities=29%  Similarity=0.285  Sum_probs=29.2

Q ss_pred             CeEEEecCCCChHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhh
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGS--NGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~--~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      ++||-+||  |..+...++....  ..+|+..|-+++.++.+.+..
T Consensus         2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~   45 (389)
T COG1748           2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI   45 (389)
T ss_pred             CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc
Confidence            46888999  5555555554322  369999999998877776653

>cd08230 glucose_DH Glucose dehydrogenase

Probab=84.56  E-value=5  Score=25.66  Aligned_cols=43  Identities=21%  Similarity=0.165  Sum_probs=29.6

Q ss_pred             CCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeC---CHHHHHHHHH
Q psy8023          15 KPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVEL---IPEVLQFTHY   59 (88)
Q Consensus        15 ~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~---~~~~~~~a~~   59 (88)
                      .++.+|+-.|+| .|..+..+++..  +.++++++.   ++.-.+.+++
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~~  217 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVEE  217 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHH
Confidence            467788888875 355666667765  447999986   5666666654

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK07576 short chain dehydrogenase; Provisional

Probab=84.19  E-value=7.3  Score=23.77  Aligned_cols=61  Identities=15%  Similarity=0.133  Sum_probs=37.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++++-.| |+|.++..+++.+. .+.+|+.++.+++.++...+.....+      .++.++..|+.+
T Consensus         8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~   69 (264)
T PRK07576          8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG------PEGLGVSADVRD   69 (264)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC------CceEEEECCCCC
Confidence            456777777 56677776666542 45689999988876655544444322      234566666653

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=84.10  E-value=5.2  Score=25.71  Aligned_cols=44  Identities=25%  Similarity=0.320  Sum_probs=29.7

Q ss_pred             CCCCCeEEEecCC-CChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGSG-SGYLTACFADLVGSNG-EVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~   59 (88)
                      +.++.+|+-.|+| .|..+..+++..  +. ++++++.+++..+.+++
T Consensus       185 ~~~g~~VlV~G~g~vG~~a~q~ak~~--G~~~vi~~~~~~~~~~~~~~  230 (369)
T cd08301         185 VKKGSTVAIFGLGAVGLAVAEGARIR--GASRIIGVDLNPSKFEQAKK  230 (369)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence            5678888888754 333444555554  34 79999998887777644

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK09072 short chain dehydrogenase; Provisional

Probab=83.92  E-value=7.4  Score=23.60  Aligned_cols=60  Identities=13%  Similarity=0.075  Sum_probs=36.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.|++ |.++..+++.+ ..+.+|+.++.++..++...+.. ..      ..++.++..|..+
T Consensus         4 ~~~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~------~~~~~~~~~D~~d   64 (263)
T PRK09072          4 KDKRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PY------PGRHRWVVADLTS   64 (263)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hc------CCceEEEEccCCC
Confidence            34567766654 55555555543 34668999999887766555444 11      2356677777654

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=83.75  E-value=6  Score=25.49  Aligned_cols=44  Identities=18%  Similarity=0.388  Sum_probs=30.3

Q ss_pred             CCCCCeEEEecCC-CChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGSG-SGYLTACFADLVGSNG-EVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~   59 (88)
                      ++++.+||-.|+| .|..+..+++..  +. +++++|.+++..+.+++
T Consensus       184 ~~~g~~VlV~G~G~vG~~a~~~ak~~--G~~~vi~~~~~~~~~~~~~~  229 (368)
T cd08300         184 VEPGSTVAVFGLGAVGLAVIQGAKAA--GASRIIGIDINPDKFELAKK  229 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHH
Confidence            5678888888764 334445556654  44 69999999887777654

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=83.62  E-value=7.4  Score=23.40  Aligned_cols=60  Identities=10%  Similarity=-0.030  Sum_probs=38.4

Q ss_pred             CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++|- ..|+|.++..+++.+. .+.+|+.++.++...+.+.+.+...+      .++.++..|+.+
T Consensus         7 ~~~vlI-tGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~   67 (262)
T PRK13394          7 GKTAVV-TGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG------GKAIGVAMDVTN   67 (262)
T ss_pred             CCEEEE-ECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC------ceEEEEECCCCC
Confidence            456664 4456677777666542 35589999998877666666554432      346677777654

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=83.45  E-value=7.3  Score=23.19  Aligned_cols=61  Identities=15%  Similarity=0.068  Sum_probs=38.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+++++-.| |+|.++..+++.+. .+.+|++++-++.......+.+...+      .++.++..|..+
T Consensus         5 ~~~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~   66 (251)
T PRK12826          5 EGRVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG------GKARARQVDVRD   66 (251)
T ss_pred             CCCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEECCCCC
Confidence            346777666 46777777766542 34589999988766555554444332      346777777654

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=83.31  E-value=4.1  Score=26.04  Aligned_cols=35  Identities=34%  Similarity=0.383  Sum_probs=30.2

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP   51 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~   51 (88)
                      +.+++.-.|+|+..|+++..+.++   +-.|+++|--+
T Consensus       209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~  243 (358)
T COG2933         209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGP  243 (358)
T ss_pred             hcCCceeeecccCCCccchhhhhc---ceEEEEeccch
Confidence            467889999999999999988876   56799999866

>KOG1209|consensus

Probab=83.15  E-value=3  Score=25.87  Aligned_cols=35  Identities=26%  Similarity=0.134  Sum_probs=27.3

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCC-CceEEEEeC
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGS-NGEVTAVEL   49 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~-~~~v~~~D~   49 (88)
                      ...+.||-.||..|+++..++..+.. +.+|+++--
T Consensus         5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR   40 (289)
T KOG1209|consen    5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATAR   40 (289)
T ss_pred             cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEcc
Confidence            35678999999999999999887643 556777654

>PRK13978 ribose-5-phosphate isomerase A; Provisional

Probab=82.96  E-value=7.2  Score=24.05  Aligned_cols=47  Identities=11%  Similarity=0.148  Sum_probs=30.7

Q ss_pred             HhhcCCCCCeEEEecCCCChHHHHHHHHhC-----CCceEEEEeCCHHHHHHHHH
Q psy8023          10 LKDNLKPGAKVLDIGSGSGYLTACFADLVG-----SNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        10 ~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~-----~~~~v~~~D~~~~~~~~a~~   59 (88)
                      ...++++++.   +|-|+|.+...+.+.++     ...++.++=.|...-..|++
T Consensus        15 A~~~V~~gmv---vGLGTGSTv~~~i~~L~~~~~~~~l~i~~VptS~~t~~~a~~   66 (228)
T PRK13978         15 VLSQINGDMT---LGIGTGSTMELLLPQMAQLIKERGYNITGVCTSNKIAFLAKE   66 (228)
T ss_pred             HHHhCCCCCE---EEeCchHHHHHHHHHHHHHhhccCccEEEEeCcHHHHHHHHH
Confidence            4456777764   67778887776544332     12358888888887777766

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=82.93  E-value=5.6  Score=27.43  Aligned_cols=42  Identities=33%  Similarity=0.369  Sum_probs=32.0

Q ss_pred             CCCeEEEecCCCC-hHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          16 PGAKVLDIGSGSG-YLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        16 ~~~~vlD~g~G~G-~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      ++.+++-+|+|.- ..++..++..  +.+|+.+|.++..++.+++
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~  205 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQS  205 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence            4579999999854 5666667766  4579999999987777765

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=82.77  E-value=7.9  Score=23.08  Aligned_cols=59  Identities=12%  Similarity=0.027  Sum_probs=35.7

Q ss_pred             CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++|-.|+ +|.++..+++.+. .+.+|++++-++...+.....+.. +      .++.++..|+.+
T Consensus         5 ~~~vlItGa-sg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~------~~~~~~~~D~~~   64 (251)
T PRK07231          5 GKVAIVTGA-SSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G------GRAIAVAADVSD   64 (251)
T ss_pred             CcEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C------CeEEEEECCCCC
Confidence            456666664 4566666665542 356899999998666555444332 1      246667777654

>PRK12939 short chain dehydrogenase; Provisional

Probab=82.70  E-value=8  Score=23.05  Aligned_cols=61  Identities=13%  Similarity=0.111  Sum_probs=39.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++++-.| |+|.++..+++.+. .+.+++.++.+++.++...+.++..      ..++.++..|+.+
T Consensus         6 ~~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~   67 (250)
T PRK12939          6 AGKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA------GGRAHAIAADLAD   67 (250)
T ss_pred             CCCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCC
Confidence            356777555 56777777776553 3568899988887666555554432      2357777777764

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=82.63  E-value=6.2  Score=24.02  Aligned_cols=45  Identities=22%  Similarity=0.258  Sum_probs=31.4

Q ss_pred             CCCCCeEEEecCCC-ChHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHh
Q psy8023          14 LKPGAKVLDIGSGS-GYLTACFADLVGSNGE-VTAVELIPEVLQFTHYN   60 (88)
Q Consensus        14 ~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~   60 (88)
                      ..++.+++-.|+|. |..++.+++..  +.+ +++++.+++..+.+++.
T Consensus        95 ~~~g~~vlI~g~g~vg~~~i~~a~~~--g~~~vi~~~~~~~~~~~~~~~  141 (277)
T cd08255          95 PRLGERVAVVGLGLVGLLAAQLAKAA--GAREVVGVDPDAARRELAEAL  141 (277)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEECCCHHHHHHHHHc
Confidence            56778888887653 55556666765  345 99999988877766553

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>TIGR00571 dam DNA adenine methylase (dam)

Probab=82.49  E-value=5.9  Score=24.67  Aligned_cols=47  Identities=11%  Similarity=0.099  Sum_probs=34.3

Q ss_pred             HHHHHHhhcCCC-CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHH
Q psy8023           5 RALELLKDNLKP-GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF   56 (88)
Q Consensus         5 ~~~~~~~~~~~~-~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~   56 (88)
                      +++..+...+++ ..+.+|..||.|.+...+.    + ..++.-|+++..+..
T Consensus        13 ~l~~~i~~~~p~~~~~yvEPF~Gggsv~l~~~----~-~~~~lND~n~~Li~~   60 (266)
T TIGR00571        13 SLLPEIKKHLPKNFNCLVEPFVGGGAVFFNLN----P-KRYLLNDINEDLINL   60 (266)
T ss_pred             HHHHHHHHhcCcccCEEEEecCCcchhheeec----C-cEEEEecCCHHHHHH
Confidence            456666666665 3689999999999877542    2 248888999987643

All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=82.49  E-value=10  Score=24.29  Aligned_cols=43  Identities=19%  Similarity=0.151  Sum_probs=33.8

Q ss_pred             CCCCCeEEEecC--CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy8023          14 LKPGAKVLDIGS--GSGYLTACFADLVGSNGEVTAVELIPEVLQFTH   58 (88)
Q Consensus        14 ~~~~~~vlD~g~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~   58 (88)
                      +.++.+||-.|+  |.|..++.+++..  +.++++++.+++-.+.++
T Consensus       156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~  200 (348)
T PLN03154        156 PKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLK  200 (348)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHH
Confidence            567889988887  4777888888886  458999998887777665

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=82.34  E-value=9.9  Score=23.89  Aligned_cols=44  Identities=18%  Similarity=0.191  Sum_probs=33.6

Q ss_pred             CCCCCeEEEecC--CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGS--GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +.++.+||-.|.  |.|..++.+++..  +.++++++-+++..+.+++
T Consensus       136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~  181 (325)
T TIGR02825       136 VKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKK  181 (325)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence            567888988883  5777888888876  4589999988877776654

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK05650 short chain dehydrogenase; Provisional

Probab=82.01  E-value=9.2  Score=23.32  Aligned_cols=58  Identities=12%  Similarity=-0.108  Sum_probs=35.1

Q ss_pred             eEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          19 KVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++-.| |+|.++..+++.+ ..+.+|+.++.++...+.+.+.....+      .++.++..|..+
T Consensus         2 ~vlVtG-asggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~   60 (270)
T PRK05650          2 RVMITG-AASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG------GDGFYQRCDVRD   60 (270)
T ss_pred             EEEEec-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEccCCC
Confidence            455555 4666666666654 235689999888766665555444322      345666667654

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=81.58  E-value=8.4  Score=24.11  Aligned_cols=44  Identities=25%  Similarity=0.398  Sum_probs=32.3

Q ss_pred             CCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      ..++..|+-.|+| .|..+..+++..  +.+++.++.+++..+.+++
T Consensus       160 ~~~~~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~  204 (330)
T cd08245         160 PRPGERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELARK  204 (330)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence            5677788888876 666666667765  4589999998887777643

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=81.54  E-value=7.9  Score=24.91  Aligned_cols=44  Identities=18%  Similarity=0.324  Sum_probs=30.0

Q ss_pred             CCCCCeEEEecCC-CChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGSG-SGYLTACFADLVGSNG-EVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~   59 (88)
                      +.++.+|+-.|+| .|..++.+++..  +. +|++++.+++..+.+++
T Consensus       182 ~~~g~~vlV~G~g~vG~~~~~~a~~~--G~~~Vi~~~~~~~~~~~~~~  227 (365)
T cd08277         182 VEPGSTVAVFGLGAVGLSAIMGAKIA--GASRIIGVDINEDKFEKAKE  227 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHH
Confidence            5678888888764 333445556654  44 79999998877777654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=81.51  E-value=9.4  Score=23.11  Aligned_cols=59  Identities=10%  Similarity=0.026  Sum_probs=34.5

Q ss_pred             EEEecCCCChHHHHHHHHhC-----CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          20 VLDIGSGSGYLTACFADLVG-----SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        20 vlD~g~G~G~~~~~l~~~~~-----~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++-.|++ ++++..+++.+.     .+.+|+.++.+++.++.+.+.++...    ...++.++..|+.+
T Consensus         3 vlItGas-~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~----~~~~v~~~~~Dl~~   66 (256)
T TIGR01500         3 CLVTGAS-RGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAER----SGLRVVRVSLDLGA   66 (256)
T ss_pred             EEEecCC-CchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcC----CCceEEEEEeccCC
Confidence            4555644 555555555442     35678888888777766665554321    12356667777654

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>PRK05875 short chain dehydrogenase; Provisional

Probab=81.47  E-value=9.7  Score=23.23  Aligned_cols=63  Identities=13%  Similarity=-0.006  Sum_probs=38.2

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.|+ +|.++..+++.+. .+.+|++++-++...+...+.+....    ...++.++..|+.+
T Consensus         6 ~~k~vlItGa-sg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dl~~   69 (276)
T PRK05875          6 QDRTYLVTGG-GSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALK----GAGAVRYEPADVTD   69 (276)
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcc----CCCceEEEEcCCCC
Confidence            4567887774 4566777766542 35689999988766554444443322    12456677777654

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=81.26  E-value=8.3  Score=24.28  Aligned_cols=45  Identities=27%  Similarity=0.383  Sum_probs=32.0

Q ss_pred             cCCCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .+.++.+||..|+|. |...+.+++..  +.+++++..+++..+.+++
T Consensus       156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~  201 (337)
T cd08261         156 GVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE  201 (337)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH
Confidence            356778898888653 66667777775  5689988888777666543

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=81.06  E-value=9.7  Score=22.93  Aligned_cols=61  Identities=15%  Similarity=0.134  Sum_probs=37.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++++|-.| |+|.++..+++.+. .+.+++.++.++..++...+.++..+      .++.++..|+.+
T Consensus         8 ~~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~   69 (254)
T PRK08085          8 AGKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG------IKAHAAPFNVTH   69 (254)
T ss_pred             CCCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC------CeEEEEecCCCC
Confidence            456677777 55666666666543 35689999988776666555544322      245556666553

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=80.80  E-value=10  Score=22.91  Aligned_cols=61  Identities=13%  Similarity=0.027  Sum_probs=37.4

Q ss_pred             CeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.+|-.| |+|.++..+++.+. .+.+++.+|.++...+...+......    ...++.++..|+.+
T Consensus         3 k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~   64 (259)
T PRK12384          3 QVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEY----GEGMAYGFGADATS   64 (259)
T ss_pred             CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc----CCceeEEEEccCCC
Confidence            4577777 56777777766542 45689999988766655544443221    01356777777654

>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length

Probab=80.74  E-value=0.65  Score=24.68  Aligned_cols=17  Identities=29%  Similarity=0.438  Sum_probs=12.4

Q ss_pred             EEEecCCCChHHHHHHH
Q psy8023          20 VLDIGSGSGYLTACFAD   36 (88)
Q Consensus        20 vlD~g~G~G~~~~~l~~   36 (88)
                      -+|+|||.|..-....+
T Consensus         6 NIDIGcG~GNTmda~fR   22 (124)
T PF07101_consen    6 NIDIGCGAGNTMDAAFR   22 (124)
T ss_pred             ccccccCCCcchhhhhh
Confidence            58999999986544433

>PRK08303 short chain dehydrogenase; Provisional

Probab=80.66  E-value=12  Score=23.68  Aligned_cols=34  Identities=15%  Similarity=0.005  Sum_probs=22.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCC
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELI   50 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~   50 (88)
                      ++++++-.|++. +++..+++.+ ..+.+|+.++.+
T Consensus         7 ~~k~~lITGgs~-GIG~aia~~la~~G~~Vv~~~r~   41 (305)
T PRK08303          7 RGKVALVAGATR-GAGRGIAVELGAAGATVYVTGRS   41 (305)
T ss_pred             CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEecc
Confidence            456788888554 4566666654 245688888776

>PLN02384 ribose-5-phosphate isomerase

Probab=80.63  E-value=9.3  Score=24.11  Aligned_cols=47  Identities=13%  Similarity=0.170  Sum_probs=30.0

Q ss_pred             HhhcCCCCCeEEEecCCCChHHHHHHH----HhCCC-ce-EEEEeCCHHHHHHHHH
Q psy8023          10 LKDNLKPGAKVLDIGSGSGYLTACFAD----LVGSN-GE-VTAVELIPEVLQFTHY   59 (88)
Q Consensus        10 ~~~~~~~~~~vlD~g~G~G~~~~~l~~----~~~~~-~~-v~~~D~~~~~~~~a~~   59 (88)
                      ...++++++.   +|-|+|.+...+.+    +.... .+ ++++=.|......|++
T Consensus        43 A~~~V~~gmv---VGLGTGSTv~~~I~~La~r~~~~~l~~I~~VpTS~~T~~~a~~   95 (264)
T PLN02384         43 AVEFVESGMV---LGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTSKKTHEQAVS   95 (264)
T ss_pred             HHHhccCCCE---EEecchHHHHHHHHHHHHhhhhccccceEEEcCcHHHHHHHHH
Confidence            4456777764   67777877665544    33211 22 8888888887777766

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=80.58  E-value=4  Score=28.70  Aligned_cols=35  Identities=14%  Similarity=0.114  Sum_probs=26.9

Q ss_pred             CCeEEEecCCCChHHHHHHHHh------CC-----CceEEEEeCCH
Q psy8023          17 GAKVLDIGSGSGYLTACFADLV------GS-----NGEVTAVELIP   51 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~------~~-----~~~v~~~D~~~   51 (88)
                      .-+|+|+|=|+|.......+.+      .+     ..+++++|..|
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p  103 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFP  103 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCC
Confidence            3589999999999888777655      12     35899999754

>PLN02827 Alcohol dehydrogenase-like

Probab=80.06  E-value=9.5  Score=24.81  Aligned_cols=44  Identities=25%  Similarity=0.331  Sum_probs=29.4

Q ss_pred             CCCCCeEEEecCC-CChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGSG-SGYLTACFADLVGSNG-EVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~   59 (88)
                      +.++.+|+-.|+| .|...+.+++..  +. .++++|.+++..+.+++
T Consensus       191 ~~~g~~VlV~G~G~vG~~~iqlak~~--G~~~vi~~~~~~~~~~~a~~  236 (378)
T PLN02827        191 VSKGSSVVIFGLGTVGLSVAQGAKLR--GASQIIGVDINPEKAEKAKT  236 (378)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHH
Confidence            5678889888764 333444455554  33 58899988877777654

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=80.02  E-value=12  Score=23.35  Aligned_cols=44  Identities=18%  Similarity=0.188  Sum_probs=32.9

Q ss_pred             CCCCCeEEEec--CCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIG--SGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g--~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +.++.+||-.|  .+.|..++.+++..  +.++++++.+++..+.+++
T Consensus       141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~  186 (329)
T cd08294         141 PKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE  186 (329)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence            56778888877  45777777788876  5589999988877666654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	88
1i1n_A	226	Human Protein L-Isoaspartate O-Methyltransferase Wi		7e-15
1r18_A	227	Drosophila Protein Isoaspartyl Methyltransferase Wi		6e-11
2pbf_A	227	Crystal Structure Of A Putative Protein-L-Isoaspart		1e-09
2yxe_A	215	Crystal Structure Of L-Isoaspartyl Protein Carboxyl		3e-07
1jg4_A	235	Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-		6e-06
3bkx_A	275	Crystal Structure Of Cyclopropane-fatty-acyl-phosph		1e-05
3lbf_A	210	Crystal Structure Of Protein L-Isoaspartyl Methyltr		7e-04

>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S- Adenosyl Homocysteine Length = 226

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 56/84 (66%)
Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M+A ALELL D L  GAK LD+GSGSG LTACFA +VG  G+V  ++ I E++  +  N+
Sbjct: 63  MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNV 122
Query: 62  QQGNPELLPNIKFEPQTGEGDIQY 85
           ++ +P LL + + +   G+G + Y
Sbjct: 123 RKDDPTLLSSGRVQLVVGDGRMGY 146

>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With S-Adenosyl-L- Homocysteine Length = 227

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 5/73 (6%)
Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNG-----EVTAVELIPEVLQF 56
           M+A ALE L+D+LKPGA++LD+GSGSGYLTACF   + + G      +  +E   E+++ 
Sbjct: 70  MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRR 129
Query: 57  THYNIQQGNPELL 69
           +  N+   +  +L
Sbjct: 130 SKANLNTDDRSML 142

>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O- Methyltransferase Beta-Aspartate Methyltransferase (Pcmt) From Plasmodium Falciparum In Complex With S-Adenosyl-L-Homocysteine Length = 227

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFAD----LVGSNGEVTAVELIPEVLQFT 57
           M+A +L+ L + LKPG++ +D+GSGSGYLT C A     L   N  V  +E + +++ F+
Sbjct: 66  MHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFS 125
Query: 58  HYNIQQGNPELL 69
             NI++  PELL
Sbjct: 126 LENIKRDKPELL 137

>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl Methyltranferase Length = 215

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 13  NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
           +LKPG KVL+IG+G GY  A  A++VG +G V ++E IPE+ +     +++
Sbjct: 74  DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK 124

>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O- Methyltransferase With S-Adenosylmethionine Length = 235

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 13  NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG 64
           NLKPG  +L++G+GSG+  A  +++V ++  V  +E IPE+++F   N+++ 
Sbjct: 88  NLKPGMNILEVGTGSGWNAALISEIVKTD--VYTIERIPELVEFAKRNLERA 137

>pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid Synthase- Like Protein (yp_807781.1) From Lactobacillus Casei Atcc 334 At 1.85 A Resolution Length = 275

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL 49
          +KPG K+L+IG G G L+A  AD VGS+G VT +++
Sbjct: 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDI 76

>pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl Methyltransferase From Escherichia Coli Length = 210

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 5/49 (10%)
Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELI 50
           M AR  ELL+  L P ++VL+IG+GSGY TA  A LV     V +VE I
Sbjct: 65  MVARMTELLE--LTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERI 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	88
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	7e-26
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	2e-23
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	9e-23
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	1e-19
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	1e-18
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	9e-18
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	2e-17
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	9e-15
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	3e-14
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	8e-14
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	5e-12
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	2e-11
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	2e-11
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	4e-11
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	2e-10
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	2e-10
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	4e-10
3f4k_A	257	Putative methyltransferase; structural genomics, P	1e-09
1xxl_A	239	YCGJ protein; structural genomics, protein structu	1e-09
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	2e-09
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	3e-09
3i9f_A	170	Putative type 11 methyltransferase; structural gen	5e-09
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	6e-09
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	6e-09
2b25_A	336	Hypothetical protein; structural genomics, methyl	7e-09
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	7e-09
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	7e-09
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	8e-09
3ocj_A	305	Putative exported protein; structural genomics, PS	8e-09
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	1e-08
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	1e-08
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	1e-08
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	2e-08
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	2e-08
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	3e-08
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	4e-08
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	4e-08
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	5e-08
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	7e-08
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	7e-08
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	8e-08
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	9e-08
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	9e-08
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	1e-07
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	2e-07
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	2e-07
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	3e-07
3ege_A	261	Putative methyltransferase from antibiotic biosyn	3e-07
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	4e-07
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	5e-07
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	5e-07
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	6e-07
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	7e-07
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	8e-07
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	1e-06
3cc8_A	230	Putative methyltransferase; structural genomics, j	1e-06
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	1e-06
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	3e-06
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	4e-06
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	4e-06
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	6e-06
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	6e-06
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	7e-06
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	7e-06
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	7e-06
2p7i_A	250	Hypothetical protein; putative methyltransferase,	9e-06
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	1e-05
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	1e-05
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	1e-05
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	1e-05
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	1e-05
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	1e-05
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	2e-05
3lpm_A	259	Putative methyltransferase; structural genomics, p	2e-05
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	2e-05
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	2e-05
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	2e-05
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	3e-05
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	3e-05
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	3e-05
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	5e-05
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	6e-05
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	6e-05
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	6e-05
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	7e-05
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	8e-05
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	9e-05
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	1e-04
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	1e-04
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	1e-04
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	2e-04
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	2e-04
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	2e-04
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	2e-04
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	3e-04
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	3e-04
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	3e-04
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	4e-04
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	4e-04
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	4e-04
3ll7_A	410	Putative methyltransferase; methytransferase, stru	6e-04
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	7e-04
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	7e-04
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	9e-04

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Length = 226

 Score = 94.2 bits (235), Expect = 7e-26
 Identities = 35/75 (46%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M+A ALELL D L  GAK LD+GSGSG LTACFA +VG  G+V  ++ I E++  +  N+
Sbjct: 63  MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNV 122

Query: 62  QQGNPELL--PNIKF 74
           ++ +P LL    ++ 
Sbjct: 123 RKDDPTLLSSGRVQL 137

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Length = 227

 Score = 87.7 bits (218), Expect = 2e-23
 Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 7/80 (8%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNG-----EVTAVELIPEVLQF 56
           M+A ALE L+D+LKPGA++LD+GSGSGYLTACF   + + G      +  +E   E+++ 
Sbjct: 70  MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRR 129

Query: 57  THYNIQQGNPELL--PNIKF 74
           +  N+   +  +L    +  
Sbjct: 130 SKANLNTDDRSMLDSGQLLI 149

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} Length = 227

 Score = 86.1 bits (214), Expect = 9e-23
 Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 6/79 (7%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFA----DLVGSNGEVTAVELIPEVLQFT 57
           M+A +L+ L + LKPG++ +D+GSGSGYLT C A     L   N  V  +E + +++ F+
Sbjct: 66  MHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFS 125

Query: 58  HYNIQQGNPELL--PNIKF 74
             NI++  PELL   N K 
Sbjct: 126 LENIKRDKPELLKIDNFKI 144

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215

 Score = 78.0 bits (193), Expect = 1e-19
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 5/73 (6%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M     ELL   LKPG KVL+IG+G GY  A  A++VG +G V ++E IPE+ +     +
Sbjct: 65  MVGMMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTL 122

Query: 62  QQGNPELLPNIKF 74
           ++       N+  
Sbjct: 123 RKLG---YDNVIV 132

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317

 Score = 76.7 bits (189), Expect = 1e-18
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 4   ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
           A  +E +   L  G +VL+IG G+GY  A  + +VG  G V +VE   ++ +    N+++
Sbjct: 65  ALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER 122

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235

 Score = 73.4 bits (181), Expect = 9e-18
 Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 7/73 (9%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
           M A  LE+   NLKPG  +L++G+GSG+  A  +++V    +V  +E IPE+++F   N+
Sbjct: 79  MVAIMLEIA--NLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNL 134

Query: 62  QQGNPELLPNIKF 74
           ++     + N+  
Sbjct: 135 ERAG---VKNVHV 144

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231

 Score = 72.3 bits (178), Expect = 2e-17
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 10/71 (14%)

Query: 4   ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
              L+ L   L  G KVL+IG+G GY TA  A++V    +V +VE+  ++  +    +  
Sbjct: 60  IFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY 114

Query: 64  GNPELLPNIKF 74
                  NIK 
Sbjct: 115 -----YNNIKL 120

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210

 Score = 64.9 bits (159), Expect = 9e-15
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 8/74 (10%)

Query: 1   MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60
            M AR  ELL+  L P ++VL+IG+GSGY TA  A LV     V +VE I  +       
Sbjct: 64  YMVARMTELLE--LTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRR 118

Query: 61  IQQGNPELLPNIKF 74
           ++  +   L N+  
Sbjct: 119 LKNLD---LHNVST 129

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 63.6 bits (155), Expect = 3e-14
 Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 8/80 (10%)

Query: 8   ELLKD-NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNP 66
           ++LK+  LK G  VLD+G+G+G+     + +VG  G+V A+++  E++ +    + +   
Sbjct: 28  KVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG- 86

Query: 67  ELLPNIKFEPQTGEGDIQYL 86
             L N++      + +   +
Sbjct: 87  --LKNVEVL----KSEENKI 100

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 62.2 bits (151), Expect = 8e-14
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 8  ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPE 67
          + +K  +K G  V+D   G+G  TA  A LVG NG V   ++  + +  T   +   N  
Sbjct: 14 DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN-- 71

Query: 68 LLPNIKFEPQTGEGDIQYL 86
          L+  +       +   +Y+
Sbjct: 72 LIDRVTLIKDGHQNMDKYI 90

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 58.9 bits (142), Expect = 5e-12
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 13  NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPEL---- 68
               GA VLD+G G+G      + LVG +G+V  V+++   L+     ++    +     
Sbjct: 80  GSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSP 139

Query: 69  -LPNIKFEPQTGEGDIQYL 86
              N++F     +G I+ L
Sbjct: 140 SRSNVRFL----KGFIENL 154

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 56.9 bits (137), Expect = 2e-11
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 8/73 (10%)

Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIK 73
          +     ++D G G GYL      L+    + T ++    +L       ++    L  + +
Sbjct: 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEA----RELFRLLPYDSE 75

Query: 74 FEPQTGEGDIQYL 86
          F     EGD   +
Sbjct: 76 FL----EGDATEI 84

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233

 Score = 56.6 bits (136), Expect = 2e-11
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query: 14  LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
           +K G ++L +G  SG   +  +D++G  G +  VE  P V++
Sbjct: 75  VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMR 116

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 56.1 bits (135), Expect = 4e-11
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 10/86 (11%)

Query: 1  MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60
           +             PGAKVL+ G G G  T   A     + E+T++++ PE L+    N
Sbjct: 24 TLEKLLHHDT--VYPPGAKVLEAGCGIGAQTVILAKN-NPDAEITSIDISPESLEKAREN 80

Query: 61 IQQGNPELLPNIKFEPQTGEGDIQYL 86
           ++     + N+KF     + +I  L
Sbjct: 81 TEKNG---IKNVKFL----QANIFSL 99

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 54.3 bits (130), Expect = 2e-10
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVL 54
           +KPG K+L+IG G G L+A  AD VGS+G VT +++     
Sbjct: 40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDY 81

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 53.9 bits (129), Expect = 2e-10
 Identities = 12/72 (16%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 9  LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPEL 68
          + + +      ++D+G G G  T   A  +    ++   +L   +++     I++G+P+ 
Sbjct: 29 IDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAE-VIKEGSPDT 87

Query: 69 LPNIKFEPQTGE 80
            N+ F+  + +
Sbjct: 88 YKNVSFKISSSD 99

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 53.1 bits (127), Expect = 4e-10
 Identities = 18/51 (35%), Positives = 29/51 (56%)

Query: 13  NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
           ++K G +++D G GSG + A  A  VGS+G+V A E   E  +    N+ +
Sbjct: 109 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK 159

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 51.8 bits (124), Expect = 1e-09
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 11/83 (13%)

Query: 5   RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF-THYNIQQ 63
           +A+  + + L   AK+ DIG G+G  T   AD V   G++T ++L P+ ++      ++ 
Sbjct: 36  KAVSFINE-LTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKA 92

Query: 64  GNPELLPNIKFEPQTGEGDIQYL 86
                   +K       G +  L
Sbjct: 93  N---CADRVKGI----TGSMDNL 108

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 51.7 bits (124), Expect = 1e-09
 Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 12/83 (14%)

Query: 4  ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
             ++      +   +VLDIG+G+G+    F+  V    E   V+   E+++      Q+
Sbjct: 11 GLMIKTA--ECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQE 65

Query: 64 GNPELLPNIKFEPQTGEGDIQYL 86
               + N++F+    +G  + L
Sbjct: 66 KG---VENVRFQ----QGTAESL 81

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 51.3 bits (123), Expect = 2e-09
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 15/77 (19%)

Query: 4  ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ-------- 55
          A+ +++    LK   +VLD+ +G G++   FA  V    +V A +L  ++L+        
Sbjct: 27 AKLMQIA--ALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEG 81

Query: 56 --FTHYNIQQGNPELLP 70
                   QG+ E +P
Sbjct: 82 NGHQQVEYVQGDAEQMP 98

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225

 Score = 50.6 bits (121), Expect = 3e-09
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 1  MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60
          M++ R LEL+   +  GA +LD+GS   YL        G      A E++    Q    N
Sbjct: 1  MISKR-LELVASFVSQGAILLDVGSDHAYL-PIELVERGQIKSAIAGEVVEGPYQSAVKN 58

Query: 61 IQQ 63
          ++ 
Sbjct: 59 VEA 61

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 49.3 bits (118), Expect = 5e-09
 Identities = 7/49 (14%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 8  ELLKD-NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
          E L +        ++D G G+G+      +      ++  +++    L+
Sbjct: 8  EYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALK 53

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 50.0 bits (118), Expect = 6e-09
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 7   LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNP 66
           L +LK     G  VLD+G   G+LT   A   G    +  +++   ++     NI+    
Sbjct: 37  LRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRH--- 92

Query: 67  ELLPNIKFEPQTGEGDIQ 84
            L   ++  PQT EGD  
Sbjct: 93  YLSEELRLPPQTLEGDPG 110

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 49.9 bits (119), Expect = 6e-09
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 5  RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
          +AL  + DNL   + + DIG G+G  T   A  V   G+VT ++ +   + 
Sbjct: 36 KALSFI-DNLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFID 83

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336

 Score = 49.8 bits (118), Expect = 7e-09
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 13  NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
           ++ PG  VL+ GSGSG ++   +  VGS G V + E+  +       N + 
Sbjct: 102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH 152

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 49.5 bits (118), Expect = 7e-09
 Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 2   MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ-----F 56
             +  +   +  +K  A+VLD+G G GY T   +       +   V++   ++Q      
Sbjct: 39  SRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGKERG 95

Query: 57  THYNI--QQGNPELLP 70
              ++   +G+   LP
Sbjct: 96  EGPDLSFIKGDLSSLP 111

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 49.6 bits (118), Expect = 7e-09
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 4  ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
                L   L P  +VL+ G G G   A F           A +  PE+L+
Sbjct: 36 LTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELLK 84

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 49.6 bits (118), Expect = 8e-09
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 13  NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPE 67
            + PG  +++ G GSG LT   A++VG  G V + E+  +  +    NI+    +
Sbjct: 90  GISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD 144

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 49.7 bits (118), Expect = 8e-09
 Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 6/80 (7%)

Query: 7   LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNP 66
              L+ +L+PG  V  +  G                ++  ++  PE L            
Sbjct: 109 RRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA- 167

Query: 67  ELLPNIKFEPQTGEGDIQYL 86
            L   I         D   L
Sbjct: 168 -LAGQITLH----RQDAWKL 182

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 49.1 bits (117), Expect = 1e-08
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 8   ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF----THYNIQQ 63
             L++ LK   +VLD+G G+G  +    +      EV  V+   E+L+        N+ +
Sbjct: 46  SFLEEYLKNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGVKNVVE 102

Query: 64  GNPELLPNIKFEPQT 78
              E LP   F    
Sbjct: 103 AKAEDLP---FPSGA 114

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275

 Score = 48.9 bits (116), Expect = 1e-08
 Identities = 14/55 (25%), Positives = 30/55 (54%)

Query: 9   LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
           +++  L+PG  +L++G GSG +++     +   G +T VE   + L+    N+ +
Sbjct: 103 IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE 157

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B* 3pla_E* Length = 232

 Score = 48.9 bits (116), Expect = 1e-08
 Identities = 14/42 (33%), Positives = 25/42 (59%)

Query: 14  LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
           ++ G KVL +G+ SG   +  +D++  NG+   VE  P V++
Sbjct: 74  IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVR 115

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 47.9 bits (114), Expect = 2e-08
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 4  ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNG-EVTAVELIPE 52
          +  L      L  GAK+L++G G+GY            G +V A +  PE
Sbjct: 31 SATLTKFLGELPAGAKILELGCGAGYQAEAMLAA----GFDVDATDGSPE 76

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 48.4 bits (115), Expect = 2e-08
 Identities = 10/83 (12%), Positives = 26/83 (31%), Gaps = 11/83 (13%)

Query: 4  ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
          A A+             L++G G+G +               A++    +L+      +Q
Sbjct: 27 ATAMASAVHPKGEEPVFLELGVGTGRIALPLIARG---YRYIALDADAAMLEVF----RQ 79

Query: 64 GNPELLPNIKFEPQTGEGDIQYL 86
              +   ++      + D + +
Sbjct: 80 KIAGVDRKVQVV----QADARAI 98

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 47.8 bits (114), Expect = 3e-08
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 17/83 (20%)

Query: 4   ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
              L+LL  N +PG  +LD+G G+G LT   A       EV   +    +++        
Sbjct: 47  EDLLQLL--NPQPGEFILDLGCGTGQLTEKIAQSG---AEVLGTDNAATMIEKAR----- 96

Query: 64  GNPELLPNIKFEPQTGEGDIQYL 86
              +  P++ F+      D +  
Sbjct: 97  ---QNYPHLHFD----VADARNF 112

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230

 Score = 47.6 bits (113), Expect = 4e-08
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 7  LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
          L+ + + +  GA++LD+GS   YL   F   +G      A E++    Q    N+ +
Sbjct: 12 LQKVANYVPKGARLLDVGSDHAYL-PIFLLQMGYCDFAIAGEVVNGPYQSALKNVSE 67

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244

 Score = 47.2 bits (112), Expect = 4e-08
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 2  MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI 61
          ++ R LE +   +    ++ DIGS   YL  CFA    +     A E++    Q     +
Sbjct: 8  LSKR-LEKVASYITKNERIADIGSDHAYL-PCFAVKNQTASFAIAGEVVDGPFQSAQKQV 65

Query: 62 QQ 63
          + 
Sbjct: 66 RS 67

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 47.5 bits (112), Expect = 5e-08
 Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 6/76 (7%)

Query: 6   ALELLKDNLKPGAKVLDIGSGSGYLTA-CFADLVGSNGEVTAVELIPEVLQFTHYNIQQG 64
             E      + G + + IG G   LT    + + G    V  VE+ P++ + +   I+  
Sbjct: 112 KNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELSRKVIEGL 169

Query: 65  NPELLPNIKFEPQTGE 80
               +  +        
Sbjct: 170 G---VDGVNVITGDET 182

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A Length = 227

 Score = 46.6 bits (110), Expect = 7e-08
 Identities = 16/42 (38%), Positives = 25/42 (59%)

Query: 14  LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
           +KPG  VL +G  SG   +  +D+VG  G++  +E  P VL+
Sbjct: 71  IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLR 112

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 46.2 bits (110), Expect = 7e-08
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 5  RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
          R L +           +D+G G+G +T   A        V A++  PE +  T  N+Q+
Sbjct: 22 RCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQR 77

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258

 Score = 46.6 bits (110), Expect = 8e-08
 Identities = 20/51 (39%), Positives = 27/51 (52%)

Query: 13  NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
           +L PG +VL+ G+GSG LT   A  VG  G V + E  P  L     N++ 
Sbjct: 93  DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRA 143

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} Length = 233

 Score = 46.6 bits (110), Expect = 9e-08
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 14  LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
           +KPGAKVL +G+ SG   +  +D+VG +G V AVE      +
Sbjct: 75  IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGR 116

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 46.4 bits (110), Expect = 9e-08
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 11/79 (13%)

Query: 8  ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPE 67
           LL   +K   KVLD+  G G  +    D      EV  V++  ++++      +     
Sbjct: 30 PLLMKYMKKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRE-- 84

Query: 68 LLPNIKFEPQTGEGDIQYL 86
             N++F      GD + L
Sbjct: 85 --SNVEFI----VGDARKL 97

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 46.4 bits (110), Expect = 1e-07
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 14/82 (17%)

Query: 6  ALELLKD-NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG 64
          A +LL    L+      D+G G G  T    D  G    +T ++   ++L+         
Sbjct: 22 ARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAA------ 74

Query: 65 NPELLPNIKFEPQTGEGDIQYL 86
            + LPN  F     + D+   
Sbjct: 75 --DRLPNTNFG----KADLATW 90

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 45.6 bits (108), Expect = 2e-07
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 9/74 (12%)

Query: 13  NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNI 72
            +  G   +DIGSG G L+   A        + A++    + +    NI   N  L   I
Sbjct: 41  GITAG-TCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADAN--LNDRI 95

Query: 73  KFEPQTGEGDIQYL 86
           +      +GD+  +
Sbjct: 96  QIV----QGDVHNI 105

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 44.8 bits (106), Expect = 2e-07
 Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 5  RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
          RAL +     KP   + DIG GSG +                 E+  E  +    N   
Sbjct: 14 RALAISALAPKPHETLWDIGGGSGSIA-IEWLRSTPQTTAVCFEISEERRERILSNAIN 71

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 45.0 bits (106), Expect = 3e-07
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 11/79 (13%)

Query: 8   ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPE 67
            LL+  L+P  ++L +G G+  L+         N  VT+V+    V+             
Sbjct: 34  ALLEPELRPEDRILVLGCGNSALSYELFLGGFPN--VTSVDYSSVVVAAMQACYAH---- 87

Query: 68  LLPNIKFEPQTGEGDIQYL 86
            +P +++E      D++ L
Sbjct: 88  -VPQLRWE----TMDVRKL 101

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 44.9 bits (106), Expect = 3e-07
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 9/71 (12%)

Query: 4  ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVL----QFTHY 59
             + LL  NL  G+ + DIG+G+G  +   A+       V AVE    +          
Sbjct: 24 NAIINLL--NLPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVHPQV 78

Query: 60 NIQQGNPELLP 70
              G  E L 
Sbjct: 79 EWFTGYAENLA 89

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 44.7 bits (105), Expect = 4e-07
 Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 3/51 (5%)

Query: 4  ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVL 54
             L   +    P   ++D   G+G  T   +        V  +++    L
Sbjct: 44 VVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSAL 91

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 44.1 bits (104), Expect = 5e-07
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 11/90 (12%)

Query: 1  MMNARALE----LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF 56
          M+  R +      L + L   + V+D   G+G  TA  A   G + +V A ++  + L  
Sbjct: 4  MIK-RPIHMSHDFLAEVLDDESIVVDATMGNGNDTAFLA---GLSKKVYAFDVQEQALGK 59

Query: 57 THYNIQQGNPELLPNIKFEPQTGEGDIQYL 86
          T   +       + N +      E    Y+
Sbjct: 60 TSQRLSDLG---IENTELILDGHENLDHYV 86

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 44.1 bits (104), Expect = 5e-07
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 4  ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVL 54
            ALE L         VL++ SG+GY T   + L      VTA++   E++
Sbjct: 35 PAALERL-RAGNIRGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMI 81

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280

 Score = 44.4 bits (104), Expect = 6e-07
 Identities = 18/66 (27%), Positives = 32/66 (48%)

Query: 9   LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPEL 68
           + + ++ PGA+VL+ G+GSG LT      VG  G+V + E   +  +    N+     + 
Sbjct: 92  VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP 151

Query: 69  LPNIKF 74
             N + 
Sbjct: 152 PDNWRL 157

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248

 Score = 43.8 bits (103), Expect = 7e-07
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 13  NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEV 53
           NL    +VL+ G+GSG L A  +++ G      AVE   + 
Sbjct: 88  NLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKT 128

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 43.6 bits (103), Expect = 8e-07
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 4  ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
          A     LK  L PG  +L++G+G+GY             +   VE    +L 
Sbjct: 24 AEEERALKGLLPPGESLLEVGAGTGYWLRRLPY-----PQKVGVEPSEAMLA 70

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 43.4 bits (102), Expect = 1e-06
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 12/81 (14%)

Query: 1   MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNG-EVTAVELIPEVLQF--T 57
           ++ AR L       K   +VLDIG G G     F +L    G E   V++  ++++F   
Sbjct: 27  LVKAR-LRRYIPYFKGCRRVLDIGCGRGE----FLELCKEEGIESIGVDINEDMIKFCEG 81

Query: 58  HYNIQQGNPEL----LPNIKF 74
            +N+ + +       LP+   
Sbjct: 82  KFNVVKSDAIEYLKSLPDKYL 102

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 43.2 bits (102), Expect = 1e-06
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 8/75 (10%)

Query: 1  MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ----- 55
            NA    LLK   K   +VLDIG  SG L A   +       V+ +E  PE  +     
Sbjct: 17 YYNAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKEN---GTRVSGIEAFPEAAEQAKEK 73

Query: 56 FTHYNIQQGNPELLP 70
            H  +       +P
Sbjct: 74 LDHVVLGDIETMDMP 88

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 43.2 bits (102), Expect = 1e-06
 Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 10/82 (12%)

Query: 5   RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG 64
                +         +LD+G+G+G L+A   +        T V++  ++L+      +  
Sbjct: 33  GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRGN 91

Query: 65  NPELLPNIKFEPQTGEGDIQYL 86
                  +K+     E D    
Sbjct: 92  -----LKVKYI----EADYSKY 104

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204

 Score = 41.8 bits (98), Expect = 3e-06
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 5  RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
          RA+ L K  L+    + DIG+GS  ++   A  +  NG + A+E  P+ L F   N+++
Sbjct: 29 RAVTLSKLRLQDDLVMWDIGAGSASVS-IEASNLMPNGRIFALERNPQYLGFIRDNLKK 86

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 41.8 bits (98), Expect = 4e-06
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 4  ARALELLKD-NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPE 52
          A   ++L+D   K    VL+ G G+G LT            V  +E   E
Sbjct: 32 AHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSRE 78

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 41.4 bits (98), Expect = 4e-06
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 14/81 (17%)

Query: 5   RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ-- 62
           RA+ + K NL     V+D+G GSG +T   A        V A++ +   ++ T  N+   
Sbjct: 24  RAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKF---VYAIDYLDGAIEVTKQNLAKF 80

Query: 63  --------QGN-PELLPNIKF 74
                   +G   ++L  ++F
Sbjct: 81  NIKNCQIIKGRAEDVLDKLEF 101

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 41.4 bits (97), Expect = 6e-06
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 10  LKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF-THYNIQQGNPEL 68
           +   L+  AK LD+G+G G          G    +  + + P   +    YN Q G   L
Sbjct: 76  MTGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAG---L 130

Query: 69  LPNIKFE 75
             NI  +
Sbjct: 131 ADNITVK 137

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 41.3 bits (97), Expect = 6e-06
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 5/64 (7%)

Query: 4   ARALELL--KDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF-THYN 60
            R  + +    +++ G +VLD+G G G      A        VT + +    +       
Sbjct: 47  DRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARD--VRVTGISISRPQVNQANARA 104

Query: 61  IQQG 64
              G
Sbjct: 105 TAAG 108

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 41.3 bits (97), Expect = 7e-06
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 9/81 (11%)

Query: 8  ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF--THYNIQQGN 65
           ++ + L+   ++LDIG GSG ++   A        VT +++  E ++   T       N
Sbjct: 22 PIIHNYLQEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLN 78

Query: 66 PELLPNIKFEPQTGEGDIQYL 86
           +     +F+      +   L
Sbjct: 79 QKTGGKAEFK----VENASSL 95

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 41.4 bits (97), Expect = 7e-06
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 9/84 (10%)

Query: 4   ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNG-EVTAVELIPEVLQFTHYNIQ 62
           + A E           VL++ +G G LT  F DL    G EVTA+EL   VL      + 
Sbjct: 70  SEAREFATRTGPVSGPVLELAAGMGRLTFPFLDL----GWEVTALELSTSVLAAFRKRLA 125

Query: 63  QGNPELLPNIKFEPQTGEGDIQYL 86
           +   ++           +GD+   
Sbjct: 126 EAPADVRDRCTLV----QGDMSAF 145

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 41.4 bits (97), Expect = 7e-06
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPN 71
                ++ D+G+G+G      A  +    EVT  E   E+ +F   +++  +      
Sbjct: 33 ADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFSA 90

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 41.0 bits (96), Expect = 9e-06
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 2  MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF 56
          M+   +       +PG  +L++GS  G  T+   +      ++T VE   E +  
Sbjct: 29 MHPFMVRAFTPFFRPG-NLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISH 79

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 5  RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
          RAL L     + G  + DIG GSG ++    +   + G    +E   + ++    NI  
Sbjct: 44 RALTLAALAPRRGELLWDIGGGSGSVS---VEWCLAGGRAITIEPRADRIENIQKNIDT 99

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} Length = 170

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 4/56 (7%)

Query: 7  LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ 62
          ++ L+        VLD+G+ +G +T            V + +L    L+       
Sbjct: 14 MDALEREGLEMKIVLDLGTSTGVITEQLR----KRNTVVSTDLNIRALESHRGGNL 65

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 40.2 bits (94), Expect = 1e-05
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 4  ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNG-EVTAVELIPEVLQ 55
               L+      GAK+LD G G G +    +      G +V   +L P ++ 
Sbjct: 34 YGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQ----GHDVLGTDLDPILID 82

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205

 Score = 40.3 bits (95), Expect = 1e-05
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 7   LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
           +  ++  +     V D+G+GSG L A  A  +G+   V A ++  E +     N   
Sbjct: 51  MLGIERAMVKPLTVADVGTGSGIL-AIAAHKLGA-KSVLATDISDESMTAAEENAAL 105

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 2  MNARALELLKDNLK--PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF 56
          +N + +  +   LK     +V+D+G G G L            ++T V++    L+ 
Sbjct: 13 LNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKD-SFFEQITGVDVSYRSLEI 68

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230

 Score = 40.5 bits (94), Expect = 1e-05
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 14  LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
           +K  +K+L +G+ +G   +  AD +   G V A+E  P +++
Sbjct: 72  IKRDSKILYLGASAGTTPSHVAD-IADKGIVYAIEYAPRIMR 112

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 4  ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPE 52
          A    +L   +KPG ++LD+GSGSG +   +A   G     T +++   
Sbjct: 26 ATLGRVL--RMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSL 70

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 7/49 (14%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
              K++D+ SG+G +    +       ++  VE+   +      ++  
Sbjct: 48 IRKGKIIDLCSGNGIIPLLLSTRT--KAKIVGVEIQERLADMAKRSVAY 94

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 39.7 bits (93), Expect = 2e-05
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 4  ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
             +  + + ++PG ++ DIG G+G  T   AD    + EVT V+L  E+L+       +
Sbjct: 21 PEWVAWVLEQVEPGKRIADIGCGTGTATLLLAD----HYEVTGVDLSEEMLEIAQEKAME 76

Query: 64 GNPEL 68
           N  +
Sbjct: 77 TNRHV 81

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 39.8 bits (93), Expect = 2e-05
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 5/49 (10%)

Query: 7  LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
          L  +    +   +VLD+G G G+L    AD  G   E   V+    ++ 
Sbjct: 45 LLAILG--RQPERVLDLGCGEGWLLRALADR-G--IEAVGVDGDRTLVD 88

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 39.6 bits (92), Expect = 2e-05
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 6  ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
           + +LK       KV+D+G G G L +       S  ++T V++   VL+
Sbjct: 21 VVAVLKS--VNAKKVIDLGCGEGNLLSLLLKD-KSFEQITGVDVSYSVLE 67

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 5/38 (13%)

Query: 16 PGAKVLDIGSGSGYLTACFADLVGSNG-EVTAVELIPE 52
              +LD+GSG+G  T   A L    G ++  +E    
Sbjct: 41 VDGVILDVGSGTGRWTGHLASL----GHQIEGLEPATR 74

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 39.8 bits (92), Expect = 3e-05
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 6   ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
           AL+ ++++    + ++D G GSG L     D   S   +  V++ P+ L 
Sbjct: 713 ALKHIRES--SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLA 760

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254

 Score = 39.2 bits (92), Expect = 3e-05
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 7   LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
           L+ L  +L+PG KVLD+G+GSG L A  A+ +G  G+   V++ P VL     N ++
Sbjct: 111 LKALARHLRPGDKVLDLGTGSGVL-AIAAEKLG--GKALGVDIDPMVLPQAEANAKR 164

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 38.6 bits (90), Expect = 5e-05
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 3  NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNG-EVTAVELIPEVLQFTHYNI 61
          ++  LE +K  +    K LD+G G+G  +   A    +NG +V A +     +       
Sbjct: 21 HSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLA----ANGYDVDAWDKNAMSIANVERIK 74

Query: 62 QQGNPELLPNIKFE 75
             N   L N+   
Sbjct: 75 SIEN---LDNLHTR 85

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 38.3 bits (89), Expect = 6e-05
 Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 10/77 (12%)

Query: 10 LKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELL 69
            +       VLD G+G            G   +   +E+    L+      ++ N    
Sbjct: 17 YCNESNLDKTVLDCGAGGDLPPLSIFVEDG--YKTYGIEISDLQLKKAENFSRENN---- 70

Query: 70 PNIKFEPQTGEGDIQYL 86
            +       +GDI+ L
Sbjct: 71 FKLNIS----KGDIRKL 83

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 38.3 bits (89), Expect = 6e-05
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 10/60 (16%)

Query: 14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF-THYNI--QQGNPELLP 70
          L P  + ++IG G+G                  VE    + +      +   +G  E LP
Sbjct: 45 LLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKRGVFVLKGTAENLP 97

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 Length = 210

 Score = 38.4 bits (89), Expect = 6e-05
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 10 LKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
           +  L+   +VL +G+ SG   +  AD+V   G + AVE   +  +
Sbjct: 51 HRLKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFE 95

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 38.2 bits (89), Expect = 7e-05
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 7  LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
           +L++      + +LD+  G+G     F       G+   +EL  ++L 
Sbjct: 31 ADLVRSRTPEASSLLDVACGTGTHLEHFTKE---FGDTAGLELSEDMLT 76

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 38.0 bits (88), Expect = 8e-05
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 11/71 (15%)

Query: 7   LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ-----FTHYNI 61
            ++L D       VLD+G G G+     A+      +V  ++L   +L       T   +
Sbjct: 37  KKMLPD--FNQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVV 92

Query: 62  --QQGNPELLP 70
             +Q   E + 
Sbjct: 93  CYEQKAIEDIA 103

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 38.1 bits (88), Expect = 9e-05
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 1   MMNARALELLKD--NLKPGAKVLDIGSGSGYLTACFADLVGSNG-----EVTAVELIPEV 53
            M+ +   ++    + K   K+L IG G+G +       V +           VE   E 
Sbjct: 35  FMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQ 94

Query: 54  LQFTHYNIQQGNPELLPNIKFE 75
           +      + + +   L N+KF 
Sbjct: 95  IAKYKELVAKTSN--LENVKFA 114

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 7  LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF 56
            +L +    G +++D+G G G+      +   S   V  ++L  ++L  
Sbjct: 36 RAMLPE--VGGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLAR 81

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF 56
           L   +KVLDIGSG G       +  G+      +++   ++  
Sbjct: 52 ELNENSKVLDIGSGLGGGCMYINEKYGA--HTHGIDICSNIVNM 93

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 19  KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
           K LD+G+ +GY     A  + ++G V   E+  +  +      +Q
Sbjct: 72  KALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQ 116

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 7  LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNG-EVTAVELIPEVLQ 55
            L++ +    A +LD+  G+G      AD        V  +EL  ++L 
Sbjct: 41 AALVRRHSPKAASLLDVACGTGMHLRHLADS----FGTVEGLELSADMLA 86

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 7/47 (14%), Positives = 17/47 (36%)

Query: 19  KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65
            V+  G G G  +  FA  +  +  V  ++   + ++     +    
Sbjct: 59  LVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG 105

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 10/47 (21%), Positives = 23/47 (48%)

Query: 19  KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65
           K +++G  +GY     A  +  +G++TA++   E  +     I++  
Sbjct: 73  KTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG 119

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 5/63 (7%)

Query: 7  LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNG-EVTAVELIPEVLQFTHYNIQQGN 65
          +E   +N       LD+  G+G LT               AV+L  E+L       +   
Sbjct: 28 IEKCVENNLVFDDYLDLACGTGNLTENLCPK----FKNTWAVDLSQEMLSEAENKFRSQG 83

Query: 66 PEL 68
           + 
Sbjct: 84 LKP 86

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score = 36.6 bits (85), Expect = 3e-04
 Identities = 9/47 (19%), Positives = 22/47 (46%)

Query: 19  KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65
             ++IG  +GY     A  +  +G++ A+++  E  +     I++  
Sbjct: 82  NTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG 128

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239

 Score = 36.5 bits (85), Expect = 3e-04
 Identities = 9/45 (20%), Positives = 24/45 (53%)

Query: 19  KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
           ++++IG+ +GY + CFA  +  +G++   ++  E         ++
Sbjct: 63  RIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKE 107

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232

 Score = 36.5 bits (85), Expect = 3e-04
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 19  KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
           +VL+IG   GY     A  +  +G++ A +  P          Q+
Sbjct: 75  QVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQK 119

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 36.8 bits (84), Expect = 3e-04
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 22/102 (21%)

Query: 5   RALELLKDNLKPGAKVL---DIGSGSGYLTA--CFADLVGSN----------GEVTAVEL 49
           +AL      L+P   VL    +GSG  ++    C +  V                 + E 
Sbjct: 142 QALL----ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 50  IPEVLQFTHYNIQQG---NPELLPNIKFEPQTGEGDIQYLLS 88
           + E+LQ   Y I        +   NIK    + + +++ LL 
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score = 36.1 bits (83), Expect = 3e-04
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 7  LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
          +E+  D    G  V+D G+G+G L AC + L+G+   VTA ++ P+ ++    N   
Sbjct: 42 IEIYNDGNIGGRSVIDAGTGNGIL-ACGSYLLGA-ESVTAFDIDPDAIETAKRNCGG 96

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242

 Score = 36.1 bits (84), Expect = 4e-04
 Identities = 9/45 (20%), Positives = 22/45 (48%)

Query: 19  KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
           KVL++G+ +GY     +  +  +G+V   ++     +  H   ++
Sbjct: 63  KVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWRE 107

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 36.4 bits (84), Expect = 4e-04
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 8   ELLKDNL--KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN 65
                +L      +++D+G G+G +     D      +V  V+  P  +  +  N++   
Sbjct: 212 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNM 270

Query: 66  PELLPNIKF 74
           PE L   +F
Sbjct: 271 PEALDRCEF 279

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 36.0 bits (83), Expect = 4e-04
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 9  LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNG-EVTAVELIPEVLQFTHYNIQQGNPE 67
            +D  +   +VLD+  G+G  T   A+     G EV  ++L  E+L+      ++ N +
Sbjct: 34 FKEDAKREVRRVLDLACGTGIPTLELAER----GYEVVGLDLHEEMLRVARRKAKERNLK 89

Query: 68 L 68
          +
Sbjct: 90 I 90

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410

 Score = 35.9 bits (82), Expect = 6e-04
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 4/61 (6%)

Query: 14  LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIK 73
           ++ G KV+D+  G G              +   +E   E      +NI     E   ++ 
Sbjct: 91  IREGTKVVDLTGGLGIDFIALM---SKASQGIYIERNDETAVAARHNIPLLLNE-GKDVN 146

Query: 74  F 74
            
Sbjct: 147 I 147

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225

 Score = 35.3 bits (82), Expect = 7e-04
 Identities = 8/45 (17%), Positives = 19/45 (42%)

Query: 19  KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
           KV+DIG+ +GY        +  +G +   ++  +         ++
Sbjct: 67  KVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEK 111

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223

 Score = 35.3 bits (82), Expect = 7e-04
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 19  KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
            +L+IG+  GY T   A  + S G V  +E   +       NI++
Sbjct: 61  NILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIER 105

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 35.2 bits (81), Expect = 9e-04
 Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 5  RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
            L  L  +    +  L+IG  +G  T   A        +T ++++P  + 
Sbjct: 40 TQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIG 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	88
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.73
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.71
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.69
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.68
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.62
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.62
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.59
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.59
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.58
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.57
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.57
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.57
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.57
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.56
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.55
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.55
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.55
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.55
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.54
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.54
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.54
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.54
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.54
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.54
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.54
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.54
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.54
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.54
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.54
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.53
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.53
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.53
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.53
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.53
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.53
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.53
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.52
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.52
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.52
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.52
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.52
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.51
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.51
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.51
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.51
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.5
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.5
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.5
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.5
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.5
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.5
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.5
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.5
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.49
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.49
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.49
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.49
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.49
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.48
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.48
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.48
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.48
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.48
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.48
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.48
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.47
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.47
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.47
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.47
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.47
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.47
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.47
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.46
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.46
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.46
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.46
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.46
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.46
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.46
3ocj_A	305	Putative exported protein; structural genomics, PS	99.46
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.45
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.45
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.45
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.45
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.45
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.45
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.45
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.44
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.44
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.44
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.44
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.44
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.44
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.44
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.43
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.43
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.43
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.43
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.43
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.42
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.42
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.42
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.42
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.42
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.42
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.42
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.42
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.41
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.41
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.41
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.41
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.4
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.4
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.4
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.4
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.4
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.4
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.4
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.39
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.39
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.39
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.39
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.39
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.39
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.38
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.38
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.38
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.38
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.38
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.38
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.38
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.38
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.37
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.37
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.37
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.37
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.37
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.37
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.37
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.36
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.36
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.35
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.35
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	99.35
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.35
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.35
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.35
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.35
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.35
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.35
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.34
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.34
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.34
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.34
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.33
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.33
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.33
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.33
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.33
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.33
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.33
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.33
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.33
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.33
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.33
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.33
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.33
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.32
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.32
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.32
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.32
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.32
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.31
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.31
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.31
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.31
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.3
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.3
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.3
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.3
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.3
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.29
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.29
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.29
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.29
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.29
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.29
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.28
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.28
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.28
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.28
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.28
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.28
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.27
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.27
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.27
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.27
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.27
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.26
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.26
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.26
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.26
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.26
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.26
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.26
2o07_A	304	Spermidine synthase; structural genomics, structur	99.25
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.25
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.25
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.24
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.24
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.24
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.24
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.24
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.24
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.23
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.23
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.23
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.23
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.22
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.22
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.21
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.21
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.21
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.21
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.21
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.2
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.19
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.18
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.18
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.18
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.16
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.15
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.13
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.13
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.12
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.12
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.12
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.1
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.09
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	99.09
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.07
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.07
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.06
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.05
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.04
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.04
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.03
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.03
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.02
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.99
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.99
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.99
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.98
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.98
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.95
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.94
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.93
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.92
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.91
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.9
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.88
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.87
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.87
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.86
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.86
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.86
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.84
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.84
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.84
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.84
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.84
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.82
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.81
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.69
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.69
3lkd_A	542	Type I restriction-modification system methyltrans	98.69
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	98.69
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.68
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.6
3khk_A	544	Type I restriction-modification system methylation	98.6
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	98.57
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.49
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.43
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.43
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.38
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	98.38
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.35
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.28
3ufb_A	530	Type I restriction-modification system methyltran	98.27
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.23
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	98.1
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.07
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	98.03
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.81
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.55
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.54
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.51
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.41
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.33
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.28
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.27
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.24
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.18
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	97.15
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	97.12
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.04
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.83
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	96.7
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.64
3me5_A	482	Cytosine-specific methyltransferase; structural ge	96.5
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	96.24
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	96.14
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.08
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	95.81
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.76
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.63
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	95.59
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.58
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.43
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	95.42
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	95.28
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	95.28
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	95.27
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	95.04
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	95.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	94.98
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	94.93
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	94.92
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	94.91
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	94.72
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	94.67
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	94.59
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	94.57
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.56
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	94.53
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	94.51
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	94.49
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.48
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	94.43
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	94.29
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	94.29
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	94.26
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.15
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.14
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	94.11
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	94.11
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	94.08
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	94.07
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	94.05
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	94.01
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	93.99
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	93.94
3imf_A	257	Short chain dehydrogenase; structural genomics, in	93.93
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	93.86
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.84
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	93.82
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	93.78
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	93.53
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	93.53
3gms_A	340	Putative NADPH:quinone reductase; structural genom	93.5
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	93.5
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	93.46
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	93.45
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	93.45
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	93.44
3rih_A	293	Short chain dehydrogenase or reductase; structural	93.4
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	93.37
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	93.34
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	93.33
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	93.29
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	93.28
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	93.28
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	93.26
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	93.26
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	93.23
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	93.15
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	93.15
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	93.1
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	93.09
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	93.02
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	93.02
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.96
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	92.95
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	92.88
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	92.84
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	92.83
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	92.68
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	92.66
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	92.59
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	92.54
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	92.53
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	92.47
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	92.29
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	92.29
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.23
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	92.17
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	92.14
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	92.11
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	92.07
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	92.05
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	91.95
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	91.94
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	91.75
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	91.75
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	91.7
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	91.67
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	91.66
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	91.65
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	91.64
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	91.63
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	91.61
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	91.61
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	91.6
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	91.59
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	91.58
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	91.57
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	91.55
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	91.55
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	91.48
3cxt_A	291	Dehydrogenase with different specificities; rossma	91.48
4g65_A	461	TRK system potassium uptake protein TRKA; structur	91.48
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	91.4
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	91.39
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	91.32
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	91.26
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	91.24
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	91.24
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	91.22
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	91.11
4eye_A	342	Probable oxidoreductase; structural genomics, niai	91.02
1xkq_A	280	Short-chain reductase family member (5D234); parra	91.0
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	90.65
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	90.6
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	90.44
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	90.44
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	90.44
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	90.4
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	90.38
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	90.29
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	90.27
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	90.14
2dpm_A	284	M.dpnii 1, protein (adenine-specific methyltransfe	90.04
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	89.97
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	89.82
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	89.81
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	89.49
1xhl_A	297	Short-chain dehydrogenase/reductase family member	89.42
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	89.41
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	89.37
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	89.35
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	89.31
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	89.29
1xq1_A	266	Putative tropinone reducatse; structural genomics,	89.18
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	89.0
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	88.87
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	88.86
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	88.85
2g1p_A	278	DNA adenine methylase; DAM methylation, GATC recog	88.83
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	88.73
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	88.55
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	88.55
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	88.54
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	88.36
3c85_A	183	Putative glutathione-regulated potassium-efflux S	88.34
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	88.32
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	88.29
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	88.26
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	88.21
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	88.17
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	88.14
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	88.13
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	88.1
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	88.06
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	88.04
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	88.02
1lnq_A	336	MTHK channels, potassium channel related protein;	87.99
1spx_A	278	Short-chain reductase family member (5L265); paral	87.98
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	87.94
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	87.91
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	87.9
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	87.79
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	87.76
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	87.75
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	87.73
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	87.5
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	87.48
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	87.47
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	87.44
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	87.42
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	87.42
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	87.32
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	87.14
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	87.14
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	87.1
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	87.06
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	87.01
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	86.76
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	86.72
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	86.69
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	86.62

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.73  E-value=6.5e-17  Score=97.77  Aligned_cols=72  Identities=18%  Similarity=0.258  Sum_probs=61.7

Q ss_pred             HHHhhcCCCCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           8 ELLKDNLKPGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         8 ~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..+..+++++.+|||+|||+|..+..+++... ++.+|+|+|+|+.|++.|++++...+    ...+++++++|+.+
T Consensus        62 ~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~----~~~~v~~~~~D~~~  134 (261)
T 4gek_A           62 MLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK----APTPVDVIEGDIRD  134 (261)
T ss_dssp             HHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC----CSSCEEEEESCTTT
T ss_pred             HHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc----cCceEEEeeccccc
Confidence            34444578999999999999999999998764 46699999999999999999998876    56789999999875

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.71  E-value=9.7e-17  Score=95.28  Aligned_cols=77  Identities=22%  Similarity=0.266  Sum_probs=67.5

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .-++.+..+++++.+|+|+|||+|.+++.++... +..+|+++|+++.+++.|++|++.++    ...++++..+|..+.
T Consensus         4 ~RL~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~g----l~~~i~~~~~d~l~~   78 (225)
T 3kr9_A            4 KRLELVASFVSQGAILLDVGSDHAYLPIELVERG-QIKSAIAGEVVEGPYQSAVKNVEAHG----LKEKIQVRLANGLAA   78 (225)
T ss_dssp             HHHHHHHTTSCTTEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT----CTTTEEEEECSGGGG
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEEECchhhh
Confidence            3456677778889999999999999999999974 67799999999999999999999998    556899999999876


Q ss_pred             cc
Q psy8023          85 YL   86 (88)
Q Consensus        85 ~~   86 (88)
                      ++
T Consensus        79 l~   80 (225)
T 3kr9_A           79 FE   80 (225)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.69  E-value=2.7e-16  Score=93.58  Aligned_cols=76  Identities=20%  Similarity=0.281  Sum_probs=67.2

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .-++.+..+++++.+|+|+|||+|.+++.+++.. +..+|+++|+++.+++.|++|++.++    ...++++..+|..+.
T Consensus        10 ~RL~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~AvDi~~~al~~A~~N~~~~g----l~~~I~~~~gD~l~~   84 (230)
T 3lec_A           10 KRLQKVANYVPKGARLLDVGSDHAYLPIFLLQMG-YCDFAIAGEVVNGPYQSALKNVSEHG----LTSKIDVRLANGLSA   84 (230)
T ss_dssp             HHHHHHHTTSCTTEEEEEETCSTTHHHHHHHHTT-CEEEEEEEESSHHHHHHHHHHHHHTT----CTTTEEEEECSGGGG
T ss_pred             HHHHHHHHhCCCCCEEEEECCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEECchhhc
Confidence            4456677788899999999999999999999974 66789999999999999999999988    667899999999876


Q ss_pred             c
Q psy8023          85 Y   85 (88)
Q Consensus        85 ~   85 (88)
                      +
T Consensus        85 ~   85 (230)
T 3lec_A           85 F   85 (230)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.68  E-value=2.9e-16  Score=94.14  Aligned_cols=76  Identities=17%  Similarity=0.246  Sum_probs=66.9

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .-++.+..+++++.+|+|+|||+|.+++.+++.. +..+|+++|+++.+++.|++|++.++    ...++++..+|+.+.
T Consensus        10 ~RL~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~g----l~~~I~v~~gD~l~~   84 (244)
T 3gnl_A           10 KRLEKVASYITKNERIADIGSDHAYLPCFAVKNQ-TASFAIAGEVVDGPFQSAQKQVRSSG----LTEQIDVRKGNGLAV   84 (244)
T ss_dssp             HHHHHHHTTCCSSEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT----CTTTEEEEECSGGGG
T ss_pred             HHHHHHHHhCCCCCEEEEECCccHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEEecchhhc
Confidence            4466677788899999999999999999999974 66789999999999999999999988    556899999999876


Q ss_pred             c
Q psy8023          85 Y   85 (88)
Q Consensus        85 ~   85 (88)
                      +
T Consensus        85 ~   85 (244)
T 3gnl_A           85 I   85 (244)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.62  E-value=5.9e-15  Score=84.48  Aligned_cols=70  Identities=21%  Similarity=0.175  Sum_probs=58.6

Q ss_pred             HHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         6 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ....+...+.++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++.|+++.+.++     ..+++++.+|...
T Consensus        12 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~-----~~~v~~~~~~~~~   81 (185)
T 3mti_A           12 SHDFLAEVLDDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLG-----IENTELILDGHEN   81 (185)
T ss_dssp             HHHHHHTTCCTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHT-----CCCEEEEESCGGG
T ss_pred             HHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEeCcHHH
Confidence            33445555678899999999999999999987   5689999999999999999999877     4788988876654

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.62  E-value=8.8e-15  Score=84.49  Aligned_cols=68  Identities=25%  Similarity=0.261  Sum_probs=60.1

Q ss_pred             cCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .+.++.+|||+|||+|.++..+++..++.++++++|+++.+++.+++++..++    ...+++++.+|+.+.
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~   86 (197)
T 3eey_A           19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN----LIDRVTLIKDGHQNM   86 (197)
T ss_dssp             HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT----CGGGEEEECSCGGGG
T ss_pred             cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCCeEEEECCHHHH
Confidence            46788899999999999999999997666799999999999999999999877    447899999997653

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.59  E-value=1.7e-14  Score=83.79  Aligned_cols=66  Identities=23%  Similarity=0.265  Sum_probs=58.7

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ..++.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++++.++     ..+++++.+|+.+.+
T Consensus        38 ~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~  103 (204)
T 3e05_A           38 LQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKFV-----ARNVTLVEAFAPEGL  103 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHHHT-----CTTEEEEECCTTTTC
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEeCChhhhh
Confidence            5678899999999999999999985 67899999999999999999999887     478999999987644

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.59  E-value=2.5e-14  Score=83.53  Aligned_cols=65  Identities=18%  Similarity=0.278  Sum_probs=57.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ..++.+|||+|||+|.++..+++.   ..+|+++|+++.+++.|+++.+.++    ...+++++.+|+.+.+
T Consensus        53 ~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g----~~~~v~~~~~d~~~~~  117 (204)
T 3njr_A           53 PRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYG----LSPRMRAVQGTAPAAL  117 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEESCTTGGG
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcC----CCCCEEEEeCchhhhc
Confidence            567889999999999999999987   4589999999999999999999887    3348999999988743

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.58  E-value=9.5e-15  Score=85.94  Aligned_cols=67  Identities=18%  Similarity=0.236  Sum_probs=58.9

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      .++.+|||+|||+|..+..+++..+++.+|+++|+++.+++.|+++++..+    ...+++++.+|+.+.+
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~l  123 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG----LQDKVTILNGASQDLI  123 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEESCHHHHG
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC----CCCceEEEECCHHHHH
Confidence            356799999999999999999987667899999999999999999999877    4567999999986643

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.57  E-value=2.1e-14  Score=84.32  Aligned_cols=63  Identities=13%  Similarity=0.222  Sum_probs=56.8

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|.++..+++.. ++.+++|+|+|+.+++.|++++...+     ..+++++.+|+.+
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~-----~~nv~~~~~d~~~   99 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSE-----AQNVKLLNIDADT   99 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSC-----CSSEEEECCCGGG
T ss_pred             CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcC-----CCCEEEEeCCHHH
Confidence            456799999999999999999986 67899999999999999999998877     5689999999875

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.57  E-value=3e-14  Score=86.97  Aligned_cols=64  Identities=23%  Similarity=0.292  Sum_probs=56.9

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ++.+|||+|||+|.+++.+++.  +..+++++|+|+.+++.|++|...++    ...+++++.+|+.+.+
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~----l~~~v~~~~~D~~~~~  186 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHG----VSDRFFVRKGEFLEPF  186 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTT----CTTSEEEEESSTTGGG
T ss_pred             CCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcC----CCCceEEEECcchhhc
Confidence            5679999999999999999998  67899999999999999999999887    4456999999988744

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.57  E-value=2.3e-14  Score=84.76  Aligned_cols=77  Identities=9%  Similarity=0.041  Sum_probs=62.6

Q ss_pred             HHHHHHhhcCC--CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCC-cceEEeeCCc
Q psy8023           5 RALELLKDNLK--PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPN-IKFEPQTGEG   81 (88)
Q Consensus         5 ~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~d~   81 (88)
                      .++..+.....  ++.+|||+|||+|..+..+++..+++++++++|+++.+++.|+++++..+    .. .+++++.+|+
T Consensus        43 ~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g----~~~~~i~~~~gda  118 (221)
T 3dr5_A           43 QLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG----YSPSRVRFLLSRP  118 (221)
T ss_dssp             HHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT----CCGGGEEEECSCH
T ss_pred             HHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCcCcEEEEEcCH
Confidence            34444443332  23499999999999999999988668899999999999999999999877    44 6899999998


Q ss_pred             cccc
Q psy8023          82 DIQY   85 (88)
Q Consensus        82 ~~~~   85 (88)
                      .+.+
T Consensus       119 ~~~l  122 (221)
T 3dr5_A          119 LDVM  122 (221)
T ss_dssp             HHHG
T ss_pred             HHHH
Confidence            7754

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.57  E-value=1.9e-14  Score=84.93  Aligned_cols=63  Identities=11%  Similarity=0.055  Sum_probs=57.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ++.+|||+|||+|.++..+++.. ++.+|+|+|+++.+++.|+++....+     ..+++++.+|+.+.
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~-----l~nv~~~~~Da~~~   96 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEG-----LSNLRVMCHDAVEV   96 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTT-----CSSEEEECSCHHHH
T ss_pred             CCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhC-----CCcEEEEECCHHHH
Confidence            56799999999999999999986 77899999999999999999998877     66899999998764

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.56  E-value=3.8e-14  Score=80.41  Aligned_cols=67  Identities=16%  Similarity=0.138  Sum_probs=57.4

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      ..++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..++    ...++ ++.+|..+.++
T Consensus        23 ~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~-~~~~d~~~~~~   89 (178)
T 3hm2_A           23 PKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLG----VSDRI-AVQQGAPRAFD   89 (178)
T ss_dssp             CCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTT----CTTSE-EEECCTTGGGG
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhC----CCCCE-EEecchHhhhh
Confidence            4577899999999999999999986 67899999999999999999998877    34478 88888866554

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.55  E-value=9.1e-14  Score=81.74  Aligned_cols=81  Identities=44%  Similarity=0.731  Sum_probs=63.0

Q ss_pred             HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..+++.+.....++.+|||+|||+|..+..+++..++..+++++|+++.+++.++++...++.......+++++.+|+.+
T Consensus        65 ~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  144 (226)
T 1i1n_A           65 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM  144 (226)
T ss_dssp             HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred             HHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCccc
Confidence            45556655446778899999999999999999987666799999999999999999988754000003578999999865


Q ss_pred             c
Q psy8023          84 Q   84 (88)
Q Consensus        84 ~   84 (88)
                      .
T Consensus       145 ~  145 (226)
T 1i1n_A          145 G  145 (226)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.55  E-value=8.2e-14  Score=83.21  Aligned_cols=69  Identities=23%  Similarity=0.339  Sum_probs=60.6

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      ..++.+|||+|||+|.++..+++..++..+++++|+++.+++.|+++++.++    ...++++..+|+.+.++
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~  159 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG----FDDRVTIKLKDIYEGIE  159 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHT----CTTTEEEECSCGGGCCC
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcC----CCCceEEEECchhhccC
Confidence            4678899999999999999999996678899999999999999999998877    44569999999987543

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.55  E-value=1.1e-13  Score=81.46  Aligned_cols=83  Identities=35%  Similarity=0.525  Sum_probs=64.6

Q ss_pred             HHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhC----CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEee
Q psy8023           3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVG----SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQT   78 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~----~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   78 (88)
                      +..+++.+.....++.+|||+|||+|..+..+++..+    +..+++++|+++.+++.++++....+.......+++++.
T Consensus        67 ~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  146 (227)
T 2pbf_A           67 HALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIH  146 (227)
T ss_dssp             HHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEE
T ss_pred             HHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEE
Confidence            3455666654467888999999999999999999875    567999999999999999999887540000145799999


Q ss_pred             CCccccc
Q psy8023          79 GEGDIQY   85 (88)
Q Consensus        79 ~d~~~~~   85 (88)
                      +|+.+..
T Consensus       147 ~d~~~~~  153 (227)
T 2pbf_A          147 KNIYQVN  153 (227)
T ss_dssp             CCGGGCC
T ss_pred             CChHhcc
Confidence            9987643

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.55  E-value=3e-14  Score=83.69  Aligned_cols=66  Identities=27%  Similarity=0.337  Sum_probs=58.4

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .++.+|||+|||+|..+..+++..+++.+++++|+++.+++.+++++...+    ...+++++.+|+.+.
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~  122 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN----LNDRVEVRTGLALDS  122 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEESCHHHH
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEcCHHHH
Confidence            467899999999999999999987557899999999999999999999877    456799999998764

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.54  E-value=2.9e-14  Score=85.38  Aligned_cols=67  Identities=19%  Similarity=0.282  Sum_probs=59.3

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      .++.+|||+|||+|..+..+++..++.++++++|+++.+++.|++++...+    ...+++++.+|+.+.+
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g----~~~~v~~~~~d~~~~l  128 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAG----VDQRVTLREGPALQSL  128 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTT----CTTTEEEEESCHHHHH
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEcCHHHHH
Confidence            467899999999999999999987557899999999999999999999877    4568999999987643

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.54  E-value=4.6e-14  Score=83.68  Aligned_cols=67  Identities=21%  Similarity=0.298  Sum_probs=58.9

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      .++.+|||+|||+|..+..++... +..+++++|+++.+++.|+++++..+    ...+++++.+|+.+.++
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~  136 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYH----FENQVRIIEGNALEQFE  136 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTT----CTTTEEEEESCGGGCHH
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEECCHHHHHH
Confidence            467899999999999999999964 57899999999999999999999877    44689999999987654

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.54  E-value=1.4e-13  Score=80.10  Aligned_cols=64  Identities=31%  Similarity=0.449  Sum_probs=56.5

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ..++.+|||+|||+|..+..+++.   ..+++++|+++.+++.+++++..++     ..++++..+|+.+..
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~  138 (210)
T 3lbf_A           75 LTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLD-----LHNVSTRHGDGWQGW  138 (210)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEESCGGGCC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcC-----CCceEEEECCcccCC
Confidence            467889999999999999999987   4589999999999999999999877     558999999987744

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.54  E-value=3.7e-14  Score=83.33  Aligned_cols=67  Identities=13%  Similarity=0.175  Sum_probs=58.6

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      .++.+|||+|||+|..+..+++.+++..+++++|+++.+++.++++++..+    ...+++++.+|+.+.+
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~  129 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG----LSDKIGLRLSPAKDTL  129 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEESCHHHHH
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC----CCCceEEEeCCHHHHH
Confidence            356799999999999999999987557899999999999999999999877    4567999999986643

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.54  E-value=5e-14  Score=84.12  Aligned_cols=66  Identities=15%  Similarity=0.129  Sum_probs=56.9

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc--------CCCCCCCcceEEeeCCcccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG--------NPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      .++.+|||+|||+|.++..++... +..+++|+|+|+.+++.+++++..+        +     ..+++++.+|+.+.++
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-----~~nv~~~~~D~~~~l~  121 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHG-----FQNINVLRGNAMKFLP  121 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCST-----TTTEEEEECCTTSCGG
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccC-----CCcEEEEeccHHHHHH
Confidence            356799999999999999999986 6679999999999999999998765        4     4689999999887543

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.54  E-value=5.9e-14  Score=79.82  Aligned_cols=74  Identities=19%  Similarity=0.169  Sum_probs=59.6

Q ss_pred             HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++..+.. ..++.+|||+|||+|.++..+++.  +..+++++|+++.+++.++++++.++    ...+++++.+|+.+
T Consensus        20 ~~~~~~l~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~   92 (177)
T 2esr_A           20 GAIFNMIGP-YFNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTK----AENRFTLLKMEAER   92 (177)
T ss_dssp             HHHHHHHCS-CCCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTT----CGGGEEEECSCHHH
T ss_pred             HHHHHHHHh-hcCCCeEEEeCCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcC----CCCceEEEECcHHH
Confidence            344444432 346789999999999999999886  34689999999999999999998876    44589999999876


Q ss_pred             c
Q psy8023          84 Q   84 (88)
Q Consensus        84 ~   84 (88)
                      .
T Consensus        93 ~   93 (177)
T 2esr_A           93 A   93 (177)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.54  E-value=1.2e-13  Score=83.66  Aligned_cols=75  Identities=19%  Similarity=0.266  Sum_probs=61.6

Q ss_pred             HHHHHHhhcC-CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           5 RALELLKDNL-KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         5 ~~~~~~~~~~-~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+++.+.... .++.+|||+|||+|.++..++... +..+++++|+|+.+++.++++...++     ..+++++.+|..+
T Consensus        97 ~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~-----~~~v~~~~~d~~~  170 (276)
T 2b3t_A           97 CLVEQALARLPEQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLA-----IKNIHILQSDWFS  170 (276)
T ss_dssp             HHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHT-----CCSEEEECCSTTG
T ss_pred             HHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC-----CCceEEEEcchhh
Confidence            3444444433 466799999999999999999886 67899999999999999999998877     4579999999876


Q ss_pred             cc
Q psy8023          84 QY   85 (88)
Q Consensus        84 ~~   85 (88)
                      .+
T Consensus       171 ~~  172 (276)
T 2b3t_A          171 AL  172 (276)
T ss_dssp             GG
T ss_pred             hc
Confidence            54

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.54  E-value=1.1e-13  Score=82.66  Aligned_cols=63  Identities=14%  Similarity=0.150  Sum_probs=54.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++.+|||+|||+|.++..++... +..+++++|+++.+++.|++++..++    ...+++++++|+.+
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~  127 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNN----LSDLIKVVKVPQKT  127 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECCTTC
T ss_pred             CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcC----CCccEEEEEcchhh
Confidence            46799999999999999999876 45799999999999999999999877    44569999998654

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.54  E-value=6.7e-14  Score=81.91  Aligned_cols=63  Identities=13%  Similarity=0.178  Sum_probs=56.9

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|.++..+++.. ++.+++|+|+++.+++.|+++...++     ..+++++.+|+.+
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~~-----~~~v~~~~~d~~~  102 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVG-----VPNIKLLWVDGSD  102 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHC-----CSSEEEEECCSSC
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHcC-----CCCEEEEeCCHHH
Confidence            457799999999999999999986 67899999999999999999998877     4789999999876

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.54  E-value=9e-14  Score=78.89  Aligned_cols=64  Identities=23%  Similarity=0.281  Sum_probs=56.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ..++.+|||+|||+|.++..+++   +..+++++|+++.+++.+++++..++     ..+++++.+|+.+.+
T Consensus        33 ~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~   96 (183)
T 2yxd_A           33 LNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFN-----IKNCQIIKGRAEDVL   96 (183)
T ss_dssp             CCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTT-----CCSEEEEESCHHHHG
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcC-----CCcEEEEECCccccc
Confidence            45678999999999999999988   46789999999999999999999877     467999999987643

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.54  E-value=1.5e-13  Score=80.18  Aligned_cols=67  Identities=37%  Similarity=0.646  Sum_probs=58.2

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ..++.+|||+|||+|..+..+++..++..+++++|+++.+++.+++++...+     ..++++..+|+.+.+
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~  141 (215)
T 2yxe_A           75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG-----YDNVIVIVGDGTLGY  141 (215)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT-----CTTEEEEESCGGGCC
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCeEEEECCcccCC
Confidence            4677899999999999999999987555799999999999999999998776     456899999986544

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.53  E-value=4.3e-14  Score=82.10  Aligned_cols=66  Identities=18%  Similarity=0.122  Sum_probs=54.9

Q ss_pred             HHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEE
Q psy8023           6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEP   76 (88)
Q Consensus         6 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~   76 (88)
                      +...+..++++..+|||+|||+|.++..++... |..+++++|+|+.+++.++++...++    ...++++
T Consensus        39 fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~-p~a~~~A~Di~~~~leiar~~~~~~g----~~~~v~~  104 (200)
T 3fzg_A           39 FYTYVFGNIKHVSSILDFGCGFNPLALYQWNEN-EKIIYHAYDIDRAEIAFLSSIIGKLK----TTIKYRF  104 (200)
T ss_dssp             HHHHHHHHSCCCSEEEEETCTTHHHHHHHHCSS-CCCEEEEECSCHHHHHHHHHHHHHSC----CSSEEEE
T ss_pred             HHHHHHhhcCCCCeEEEecCCCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcC----CCccEEE
Confidence            344444556778899999999999999998885 67799999999999999999999887    3336766

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.53  E-value=7.8e-14  Score=83.21  Aligned_cols=63  Identities=24%  Similarity=0.468  Sum_probs=55.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||+|.++..+++..++.++|+++|+++++++.++++....       .++..+.+|...
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~-------~ni~~V~~d~~~  137 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR-------RNIFPILGDARF  137 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC-------TTEEEEESCTTC
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh-------cCeeEEEEeccC
Confidence            578999999999999999999999999999999999999999999887653       367777777654

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.53  E-value=1.7e-13  Score=79.51  Aligned_cols=74  Identities=19%  Similarity=0.158  Sum_probs=61.1

Q ss_pred             HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..+++.+.....++.+|||+|||+|.++..+++.  +..+++++|+++.+++.++++...++     ..++++..+|+.+
T Consensus        48 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~  120 (205)
T 3grz_A           48 QLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAEENAALNG-----IYDIALQKTSLLA  120 (205)
T ss_dssp             HHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTT-----CCCCEEEESSTTT
T ss_pred             HHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcC-----CCceEEEeccccc
Confidence            3456666656678889999999999999998875  45689999999999999999999877     4448999999875


Q ss_pred             c
Q psy8023          84 Q   84 (88)
Q Consensus        84 ~   84 (88)
                      .
T Consensus       121 ~  121 (205)
T 3grz_A          121 D  121 (205)
T ss_dssp             T
T ss_pred             c
Confidence            3

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.53  E-value=1.3e-13  Score=82.16  Aligned_cols=64  Identities=19%  Similarity=0.249  Sum_probs=56.5

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|..+..+++..  +.+++++|+|+.+++.++++....+    ...+++++.+|+.+
T Consensus        34 ~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~v~~~~~d~~~   97 (256)
T 1nkv_A           34 MKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELG----VSERVHFIHNDAAG   97 (256)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEESCCTT
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC----CCcceEEEECChHh
Confidence            4678899999999999999999986  4589999999999999999998876    44689999999875

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.53  E-value=3.7e-14  Score=85.18  Aligned_cols=63  Identities=17%  Similarity=0.232  Sum_probs=56.6

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|..++.++... ++.+|+++|+++.+++.+++++..++     ..+++++++|+.+
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----l~~v~~~~~d~~~  141 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLG-----LKGARALWGRAEV  141 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHT-----CSSEEEEECCHHH
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhC-----CCceEEEECcHHH
Confidence            357799999999999999999986 67899999999999999999999887     5569999999865

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.53  E-value=7.7e-14  Score=84.83  Aligned_cols=70  Identities=21%  Similarity=0.182  Sum_probs=59.3

Q ss_pred             HhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          10 LKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        10 ~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      +.....++.+|||+|||+|.+++.+++.. .. +|+++|+|+.+++.|+++++.++    ...+++++++|+.+..
T Consensus       119 l~~~~~~~~~VLDlgcG~G~~~~~la~~~-~~-~V~~vD~s~~~~~~a~~n~~~n~----~~~~v~~~~~D~~~~~  188 (278)
T 2frn_A          119 MAKVAKPDELVVDMFAGIGHLSLPIAVYG-KA-KVIAIEKDPYTFKFLVENIHLNK----VEDRMSAYNMDNRDFP  188 (278)
T ss_dssp             HHHHCCTTCEEEETTCTTTTTHHHHHHHT-CC-EEEEECCCHHHHHHHHHHHHHTT----CTTTEEEECSCTTTCC
T ss_pred             HHHhCCCCCEEEEecccCCHHHHHHHHhC-CC-EEEEEECCHHHHHHHHHHHHHcC----CCceEEEEECCHHHhc
Confidence            33446678999999999999999999985 32 89999999999999999999887    4456999999987643

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.53  E-value=8.8e-14  Score=80.00  Aligned_cols=73  Identities=19%  Similarity=0.088  Sum_probs=59.2

Q ss_pred             HHHHHHhhcC-CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           5 RALELLKDNL-KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         5 ~~~~~~~~~~-~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++..+.... .++.+|||+|||+|.++..++..  +..+|+++|+++.+++.+++++..++     ..+++++++|+.+
T Consensus        32 ~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~  104 (189)
T 3p9n_A           32 SLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVIARNIEALG-----LSGATLRRGAVAA  104 (189)
T ss_dssp             HHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHHHHHHHHHT-----CSCEEEEESCHHH
T ss_pred             HHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHcC-----CCceEEEEccHHH
Confidence            4444554321 46789999999999999987775  34589999999999999999999887     4789999999876


Q ss_pred             c
Q psy8023          84 Q   84 (88)
Q Consensus        84 ~   84 (88)
                      .
T Consensus       105 ~  105 (189)
T 3p9n_A          105 V  105 (189)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.52  E-value=2e-13  Score=84.23  Aligned_cols=67  Identities=28%  Similarity=0.459  Sum_probs=58.5

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ..++.+|||+|||+|.++..+++..++..+|+++|+++.+++.+++++...+     ..++++..+|+.+..
T Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g-----~~~v~~~~~d~~~~~  139 (317)
T 1dl5_A           73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-----IENVIFVCGDGYYGV  139 (317)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEESCGGGCC
T ss_pred             CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCeEEEECChhhcc
Confidence            4678899999999999999999987445789999999999999999998877     456999999987743

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.52  E-value=1.7e-13  Score=80.05  Aligned_cols=72  Identities=25%  Similarity=0.490  Sum_probs=61.0

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++..+.  ..++.+|||+|||+|.++..+++..++..+++++|+++.+++.++++....+     ..++++..+|+.+
T Consensus        28 ~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~   99 (219)
T 3dh0_A           28 KVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG-----LKNVEVLKSEENK   99 (219)
T ss_dssp             HHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT-----CTTEEEEECBTTB
T ss_pred             HHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEeccccc
Confidence            3444443  5677899999999999999999997677799999999999999999998876     4579999998865

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.52  E-value=4.7e-14  Score=82.58  Aligned_cols=71  Identities=17%  Similarity=0.113  Sum_probs=55.5

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH----hhhhcCCCCCCCcceEEeeCC
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY----NIQQGNPELLPNIKFEPQTGE   80 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~d   80 (88)
                      ..+..+.  ..++.+|||+|||+|.++..+++.. |..+|+++|+|+.+++.+.+    +....+     ..+++++++|
T Consensus        18 ~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~-----~~~v~~~~~d   89 (218)
T 3mq2_A           18 AEFEQLR--SQYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPAKGG-----LPNLLYLWAT   89 (218)
T ss_dssp             HHHHHHH--TTSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGGGTC-----CTTEEEEECC
T ss_pred             HHHHHhh--ccCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcC-----CCceEEEecc
Confidence            3445554  5677899999999999999999985 67899999999998876433    333333     4589999999


Q ss_pred             ccc
Q psy8023          81 GDI   83 (88)
Q Consensus        81 ~~~   83 (88)
                      +.+
T Consensus        90 ~~~   92 (218)
T 3mq2_A           90 AER   92 (218)
T ss_dssp             STT
T ss_pred             hhh
Confidence            876

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.52  E-value=1.4e-13  Score=84.49  Aligned_cols=64  Identities=22%  Similarity=0.290  Sum_probs=54.9

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||+|.++..++.+. ++++|+++|+++.+++.|+++++..+    . .+++++++|+.+
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~-~ga~V~gIDis~~~l~~Ar~~~~~~g----l-~~v~~v~gDa~~  183 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHV-YGMRVNVVEIEPDIAELSRKVIEGLG----V-DGVNVITGDETV  183 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHT-TCCEEEEEESSHHHHHHHHHHHHHHT----C-CSEEEEESCGGG
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHhcC----C-CCeEEEECchhh
Confidence            6788999999999998765554443 47899999999999999999999887    4 899999999875

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.52  E-value=1.7e-13  Score=84.38  Aligned_cols=73  Identities=15%  Similarity=0.165  Sum_probs=62.2

Q ss_pred             cHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023           2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG   81 (88)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (88)
                      +.+++++.+.  ..++.+|||+|||+|..+..+++.. ++.+|+++|+++.+++.|++++..++      .+++++++|.
T Consensus        14 Ll~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~-~~~~VigvD~d~~al~~A~~~~~~~g------~~v~~v~~d~   84 (301)
T 1m6y_A           14 MVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFS------DRVSLFKVSY   84 (301)
T ss_dssp             THHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGT------TTEEEEECCG
T ss_pred             HHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEECCH
Confidence            5667777765  5678899999999999999999987 46799999999999999999998754      4789999986


Q ss_pred             cc
Q psy8023          82 DI   83 (88)
Q Consensus        82 ~~   83 (88)
                      .+
T Consensus        85 ~~   86 (301)
T 1m6y_A           85 RE   86 (301)
T ss_dssp             GG
T ss_pred             HH
Confidence            54

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.51  E-value=9.1e-14  Score=84.76  Aligned_cols=70  Identities=21%  Similarity=0.194  Sum_probs=61.4

Q ss_pred             HHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023           9 LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus         9 ~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .+...+.++.+|||+|||+|.+++.++...  ..+|+++|+++.+++.+++|++.|+    ..++++++++|+.+.
T Consensus       118 ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g--~~~V~avD~np~a~~~~~~N~~~N~----v~~~v~~~~~D~~~~  187 (278)
T 3k6r_A          118 RMAKVAKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNK----VEDRMSAYNMDNRDF  187 (278)
T ss_dssp             HHHHHCCTTCEEEETTCTTTTTTHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTT----CTTTEEEECSCTTTC
T ss_pred             HHHHhcCCCCEEEEecCcCcHHHHHHHHhc--CCeEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEeCcHHHh
Confidence            344557889999999999999999999874  4589999999999999999999998    667899999998764

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.51  E-value=6.7e-14  Score=83.44  Aligned_cols=71  Identities=14%  Similarity=0.112  Sum_probs=55.5

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCC-CCCCCcceEEeeCCcccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNP-ELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~   86 (88)
                      .++.+|||+|||+|.++..+++.. ++.+++|+|+++.+++.|++++..... ......+++++++|+.+.++
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~  116 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLP  116 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHH
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhh
Confidence            456689999999999999999886 678999999999999999988754100 00025689999999986443

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.51  E-value=7.8e-14  Score=83.60  Aligned_cols=67  Identities=16%  Similarity=0.207  Sum_probs=58.9

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      .++.+|||+|||+|..+..+++.++++++++++|+++.+++.++++++..+    ...+++++.+|+.+.+
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g----~~~~i~~~~gda~~~l  144 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG----VDHKIDFREGPALPVL  144 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT----CGGGEEEEESCHHHHH
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCCeEEEECCHHHHH
Confidence            456799999999999999999998557899999999999999999999877    4568999999987643

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.51  E-value=8.6e-14  Score=78.40  Aligned_cols=71  Identities=18%  Similarity=0.105  Sum_probs=58.0

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .++..+....+++.+|||+|||+|.++..+++.. +  +++++|+++.+++.+++++..++     . +++++++|+.+.
T Consensus        30 ~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~-~--~v~~vD~~~~~~~~a~~~~~~~~-----~-~~~~~~~d~~~~  100 (171)
T 1ws6_A           30 ALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEG-W--EAVLVEKDPEAVRLLKENVRRTG-----L-GARVVALPVEVF  100 (171)
T ss_dssp             HHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTT-C--EEEEECCCHHHHHHHHHHHHHHT-----C-CCEEECSCHHHH
T ss_pred             HHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCC-C--eEEEEeCCHHHHHHHHHHHHHcC-----C-ceEEEeccHHHH
Confidence            3445554334477899999999999999999874 3  49999999999999999999877     3 789999998764

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.50  E-value=2.2e-13  Score=83.28  Aligned_cols=64  Identities=19%  Similarity=0.176  Sum_probs=56.9

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|..+..+++..+  .+|+++|+|+.+++.++++....+    ...+++++.+|+.+
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~  133 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVD----SPRRKEVRIQGWEE  133 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSC----CSSCEEEEECCGGG
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEECCHHH
Confidence            46778999999999999999999873  689999999999999999999877    55689999999864

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.50  E-value=2e-13  Score=82.81  Aligned_cols=66  Identities=21%  Similarity=0.201  Sum_probs=58.9

Q ss_pred             cCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .+.++.+|||+|||+|.+++.+++.. +..+|+++|+++.+++.++++++.++     ..++.++.+|+.+.
T Consensus       116 ~~~~~~~VLDlgcG~G~~s~~la~~~-~~~~V~~vD~s~~av~~a~~n~~~n~-----l~~~~~~~~d~~~~  181 (272)
T 3a27_A          116 ISNENEVVVDMFAGIGYFTIPLAKYS-KPKLVYAIEKNPTAYHYLCENIKLNK-----LNNVIPILADNRDV  181 (272)
T ss_dssp             SCCTTCEEEETTCTTTTTHHHHHHHT-CCSEEEEEECCHHHHHHHHHHHHHTT-----CSSEEEEESCGGGC
T ss_pred             hcCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCEEEEECChHHc
Confidence            46778899999999999999999986 46789999999999999999999987     56789999998765

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.50  E-value=1.1e-13  Score=80.58  Aligned_cols=64  Identities=22%  Similarity=0.003  Sum_probs=54.2

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCC-cceEEeeCCccccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPN-IKFEPQTGEGDIQY   85 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~d~~~~~   85 (88)
                      ++.+|||+|||+|.++..++...  ..+|+++|+|+.+++.|+++++.++    .. .+++++.+|+.+..
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~v~~~~~d~~~~~  117 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLK----CSSEQAEVINQSSLDFL  117 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTT----CCTTTEEEECSCHHHHT
T ss_pred             CCCeEEEcCCccCHHHHHHHHcc--CCEEEEEECCHHHHHHHHHHHHHhC----CCccceEEEECCHHHHH
Confidence            56799999999999999877763  3589999999999999999999877    22 68999999987643

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.50  E-value=1.9e-13  Score=81.37  Aligned_cols=75  Identities=16%  Similarity=0.220  Sum_probs=61.9

Q ss_pred             HHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023           6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus         6 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ++..+.. ..++.+|||+|||+|..+..+++..+++++++++|+++.+++.++++++..+    ...+++++.+|+.+.+
T Consensus        61 ~l~~l~~-~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g----~~~~i~~~~gda~~~l  135 (237)
T 3c3y_A           61 LMSFVLK-LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG----VEHKINFIESDAMLAL  135 (237)
T ss_dssp             HHHHHHH-HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT----CGGGEEEEESCHHHHH
T ss_pred             HHHHHHH-hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEcCHHHHH
Confidence            3444332 3456799999999999999999998557899999999999999999999877    4467999999987643

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.50  E-value=6.6e-14  Score=83.27  Aligned_cols=63  Identities=13%  Similarity=0.113  Sum_probs=55.5

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|..+..++... +..+|+++|+++.+++.++++...++     ..+++++++|+.+
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~  131 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQ-----LENTTFCHDRAET  131 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHT-----CSSEEEEESCHHH
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCEEEEeccHHH
Confidence            467799999999999999999864 67899999999999999999999877     4579999999765

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.50  E-value=1.2e-13  Score=80.54  Aligned_cols=67  Identities=16%  Similarity=0.030  Sum_probs=51.8

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCC----C---CCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPE----L---LPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~----~---~~~~~~~~~~~d~~~   83 (88)
                      ++++.+|||+|||+|..+..+++.   +.+|+|+|+|+.|++.|+++.......    .   ....+++++++|+.+
T Consensus        20 ~~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~   93 (203)
T 1pjz_A           20 VVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA   93 (203)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred             cCCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcccc
Confidence            457789999999999999999987   348999999999999999876531000    0   003578999999865

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.50  E-value=1.3e-13  Score=78.72  Aligned_cols=64  Identities=23%  Similarity=0.176  Sum_probs=55.2

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .++.+|||+|||+|.++..+++.  +..+++++|+++.+++.+++++..++    ...+++++.+|+.+.
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~  106 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITK----EPEKFEVRKMDANRA  106 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEESCHHHH
T ss_pred             cCCCCEEEeCCccCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhC----CCcceEEEECcHHHH
Confidence            46789999999999999988874  35689999999999999999998876    446899999998763

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.50  E-value=1.1e-14  Score=87.09  Aligned_cols=67  Identities=16%  Similarity=0.243  Sum_probs=59.2

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      .++.+|||+|||+|..+..+++..+++++|+++|+++.+++.|+++++..+    ...+++++.+|+.+.+
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g----~~~~i~~~~gda~~~l  125 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK----QEHKIKLRLGPALDTL  125 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT----CTTTEEEEESCHHHHH
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEcCHHHHH
Confidence            356799999999999999999987668899999999999999999999887    5568999999987643

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.49  E-value=5.4e-13  Score=81.40  Aligned_cols=75  Identities=11%  Similarity=0.141  Sum_probs=61.2

Q ss_pred             HHHHHHhhc-CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc-CCCCCCCcceEEeeCCcc
Q psy8023           5 RALELLKDN-LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG-NPELLPNIKFEPQTGEGD   82 (88)
Q Consensus         5 ~~~~~~~~~-~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~d~~   82 (88)
                      .+.+.+... ..++.+|||+|||+|..+..+++.+.+..+++|+|+|+.+++.++++.... +    ...+++++++|+.
T Consensus        24 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~v~~~~~d~~   99 (299)
T 3g5t_A           24 DFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPD----TYKNVSFKISSSD   99 (299)
T ss_dssp             HHHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-----CCTTEEEEECCTT
T ss_pred             HHHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccC----CCCceEEEEcCHH
Confidence            344455443 347789999999999999999987656789999999999999999999876 2    3578999999987


Q ss_pred             c
Q psy8023          83 I   83 (88)
Q Consensus        83 ~   83 (88)
                      +
T Consensus       100 ~  100 (299)
T 3g5t_A          100 D  100 (299)
T ss_dssp             C
T ss_pred             h
Confidence            6

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.49  E-value=1.7e-13  Score=82.39  Aligned_cols=64  Identities=23%  Similarity=0.337  Sum_probs=56.5

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||+|.++..+++.  +..+++++|+|+.+++.++++....+    ...+++++.+|+.+
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~  107 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSG----LQNRVTGIVGSMDD  107 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECCTTS
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcC----CCcCcEEEEcChhh
Confidence            357789999999999999999987  46699999999999999999998877    45679999999865

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.49  E-value=1.2e-13  Score=80.50  Aligned_cols=63  Identities=19%  Similarity=0.009  Sum_probs=54.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ++.+|||+|||+|.+++.++...  ..+|+++|+++.+++.+++++..++     ..+++++++|+.+.+
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s~~~l~~a~~~~~~~~-----~~~v~~~~~D~~~~~  116 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLK-----AGNARVVNSNAMSFL  116 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTT-----CCSEEEECSCHHHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEECCHHHHH
Confidence            56799999999999999877763  2489999999999999999999877     478999999987643

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.49  E-value=1.5e-14  Score=83.91  Aligned_cols=63  Identities=25%  Similarity=0.344  Sum_probs=38.9

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..++     . +++++++|+.+.
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~-----~-~~~~~~~d~~~~   91 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFG-----A-VVDWAAADGIEW   91 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC-------------------------CCHHHHHHH
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhC-----C-ceEEEEcchHhh
Confidence            567899999999999999999986 67799999999999999999998876     3 788888887763

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.49  E-value=9.9e-14  Score=81.81  Aligned_cols=84  Identities=37%  Similarity=0.651  Sum_probs=62.5

Q ss_pred             HHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCC-----CceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEe
Q psy8023           3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGS-----NGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQ   77 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~-----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   77 (88)
                      +..+++.+.....++.+|||+|||+|..+..+++..+.     ..+++++|+++.+++.+++++...+.......++++.
T Consensus        71 ~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  150 (227)
T 1r18_A           71 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV  150 (227)
T ss_dssp             HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEE
Confidence            45566666544677889999999999999999987632     3589999999999999999987632000002478899


Q ss_pred             eCCcccccc
Q psy8023          78 TGEGDIQYL   86 (88)
Q Consensus        78 ~~d~~~~~~   86 (88)
                      .+|+.+.++
T Consensus       151 ~~d~~~~~~  159 (227)
T 1r18_A          151 EGDGRKGYP  159 (227)
T ss_dssp             ESCGGGCCG
T ss_pred             ECCcccCCC
Confidence            999877543

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.48  E-value=4.4e-13  Score=78.37  Aligned_cols=63  Identities=16%  Similarity=0.220  Sum_probs=53.9

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCc----ceEEeeCCcc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNI----KFEPQTGEGD   82 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~d~~   82 (88)
                      .++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++...+    ...    +++++.+|+.
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~~~~~v~~~~~d~~   94 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLR----LPRNQWERLQLIQGALT   94 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCC----CCHHHHTTEEEEECCTT
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhc----CCcccCcceEEEeCCcc
Confidence            467899999999999999999874 55799999999999999999988765    222    7999999875

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.48  E-value=7.1e-13  Score=78.54  Aligned_cols=72  Identities=31%  Similarity=0.618  Sum_probs=59.3

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .+++.+.  ..++.+|||+|||+|.++..+++..+  .+++++|+++.+++.++++....+     ..++++..+|....
T Consensus        82 ~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~  152 (235)
T 1jg1_A           82 IMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAG-----VKNVHVILGDGSKG  152 (235)
T ss_dssp             HHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEESCGGGC
T ss_pred             HHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcC-----CCCcEEEECCcccC
Confidence            3444443  56778999999999999999999873  689999999999999999998876     55689999997544


Q ss_pred             c
Q psy8023          85 Y   85 (88)
Q Consensus        85 ~   85 (88)
                      +
T Consensus       153 ~  153 (235)
T 1jg1_A          153 F  153 (235)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.48  E-value=7.2e-13  Score=79.05  Aligned_cols=66  Identities=32%  Similarity=0.405  Sum_probs=58.5

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc-CCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG-NPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ..++.+|||+|||+|.++..+++..++..+++++|+++.+++.++++++.+ +     ..++++..+|+.+.
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-----~~~v~~~~~d~~~~  160 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-----VENVRFHLGKLEEA  160 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-----CCCEEEEESCGGGC
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-----CCCEEEEECchhhc
Confidence            567889999999999999999998766789999999999999999999886 5     56789999998764

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.48  E-value=1e-13  Score=80.90  Aligned_cols=67  Identities=16%  Similarity=0.126  Sum_probs=57.8

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      .++.+|||+|||+|..+..+++..+++.+++++|+++.+++.++++++..+    ...+++++.+|+.+.+
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~  121 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG----LIDRVELQVGDPLGIA  121 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS----GGGGEEEEESCHHHHH
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC----CCceEEEEEecHHHHh
Confidence            356799999999999999999987547899999999999999999998776    4457999999987643

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.48  E-value=3.1e-13  Score=81.85  Aligned_cols=67  Identities=21%  Similarity=0.294  Sum_probs=58.6

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc-CCCCCCCcceEEeeCCccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG-NPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ..++.+|||+|||+|..+..+++...+..+++++|+++.+++.+++++..+ +     ..++++..+|+.+.+
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g-----~~~v~~~~~d~~~~~  175 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-----IGNVRTSRSDIADFI  175 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-----CTTEEEECSCTTTCC
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CCcEEEEECchhccC
Confidence            457789999999999999999998556789999999999999999999887 6     567999999987743

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.48  E-value=3.9e-13  Score=77.98  Aligned_cols=63  Identities=14%  Similarity=0.232  Sum_probs=55.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ++.+|||+|||+|..+..++... +..+++++|+++.+++.++++...++     ..++++..+|+.+.
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~  127 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELK-----LENIEPVQSRVEEF  127 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTT-----CSSEEEEECCTTTS
T ss_pred             CCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCeEEEecchhhC
Confidence            46799999999999999999986 67899999999999999999998876     45599999998764

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.48  E-value=6.9e-13  Score=80.31  Aligned_cols=68  Identities=26%  Similarity=0.366  Sum_probs=59.4

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      +.++.+|||+|||+|.++..+++..++..+++++|+++.+++.+++++..++    ...++++..+|+.+.+
T Consensus       110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~  177 (277)
T 1o54_A          110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG----LIERVTIKVRDISEGF  177 (277)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT----CGGGEEEECCCGGGCC
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC----CCCCEEEEECCHHHcc
Confidence            4677899999999999999999986567899999999999999999998876    3468999999987653

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.47  E-value=4.2e-13  Score=85.93  Aligned_cols=64  Identities=20%  Similarity=0.226  Sum_probs=56.4

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ..++.+|||+|||+|.++..+++.   ..+|+|+|+|+.+++.|+++.+.++     ..+++|+.+|+.+.+
T Consensus       284 ~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~-----~~~v~f~~~d~~~~l  347 (433)
T 1uwv_A          284 VQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNG-----LQNVTFYHENLEEDV  347 (433)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCTTSCC
T ss_pred             CCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEECCHHHHh
Confidence            356779999999999999999987   4589999999999999999999887     558999999998743

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.47  E-value=1.3e-13  Score=81.69  Aligned_cols=64  Identities=11%  Similarity=0.056  Sum_probs=53.0

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCC-HHHHHHH---HHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELI-PEVLQFT---HYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~-~~~~~~a---~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|.++..+++.. ++.+|+|+|+| +.+++.|   +++....+     ..+++++.+|+.+
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~-----~~~v~~~~~d~~~   89 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPSKGG-----LSNVVFVIAAAES   89 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGGGHHHHHHHTSCGGGTC-----CSSEEEECCBTTB
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHcC-----CCCeEEEEcCHHH
Confidence            3677899999999999999998764 67899999999 6666666   88877766     5679999999865

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.47  E-value=3.4e-13  Score=79.36  Aligned_cols=67  Identities=19%  Similarity=0.217  Sum_probs=58.3

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ..++.+|||+|||+|..+..+++..++..+++++|+++.+++.++++++..+    ...+++++.+|+.+.
T Consensus        67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g----~~~~i~~~~~d~~~~  133 (229)
T 2avd_A           67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE----AEHKIDLRLKPALET  133 (229)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT----CTTTEEEEESCHHHH
T ss_pred             hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC----CCCeEEEEEcCHHHH
Confidence            3467799999999999999999987557899999999999999999999877    456899999998653

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.47  E-value=4.2e-13  Score=79.54  Aligned_cols=63  Identities=22%  Similarity=0.088  Sum_probs=55.3

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .++.+|||+|||+|.++..+++.   ..+|+++|+++.+++.+++++..++    ...+++++++|+.+.
T Consensus        77 ~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~  139 (241)
T 3gdh_A           77 FKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYG----IADKIEFICGDFLLL  139 (241)
T ss_dssp             SCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT----CGGGEEEEESCHHHH
T ss_pred             cCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcC----CCcCeEEEECChHHh
Confidence            36789999999999999999986   3689999999999999999999877    336899999998753

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.47  E-value=4.3e-13  Score=79.98  Aligned_cols=64  Identities=33%  Similarity=0.486  Sum_probs=56.0

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++.+|||+|||+|..+..+++..+  .+++++|+++.+++.++++....+    ...+++++.+|+.+
T Consensus        44 ~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~  107 (257)
T 3f4k_A           44 LTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKAN----CADRVKGITGSMDN  107 (257)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECCTTS
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcC----CCCceEEEECChhh
Confidence            35678999999999999999999863  489999999999999999999877    55679999999854

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.47  E-value=5.3e-13  Score=79.57  Aligned_cols=63  Identities=25%  Similarity=0.394  Sum_probs=51.7

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||+|.++..+++..++.++|+++|+++.+++...+..+..       .++.++.+|+..
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-------~nv~~i~~Da~~  136 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-------PNIFPLLADARF  136 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-------TTEEEEECCTTC
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-------CCeEEEEccccc
Confidence            467899999999999999999999888899999999999876665554432       367788888765

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.47  E-value=7.9e-13  Score=79.49  Aligned_cols=64  Identities=16%  Similarity=0.200  Sum_probs=56.0

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|.++..+++..  +.+++++|+|+.+++.++++....+    ...+++++.+|+.+
T Consensus        59 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~  122 (273)
T 3bus_A           59 VRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAG----LANRVTFSYADAMD  122 (273)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECCTTS
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcC----CCcceEEEECcccc
Confidence            3577899999999999999999875  5699999999999999999998876    45679999999865

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.46  E-value=5.5e-13  Score=78.81  Aligned_cols=66  Identities=17%  Similarity=0.225  Sum_probs=58.0

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      .++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++...+    ...+++++.+|+.+.+
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~  118 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALG----LESRIELLFGDALQLG  118 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTT----CTTTEEEECSCGGGSH
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEECCHHHHH
Confidence            467799999999999999999986 57899999999999999999999877    4457999999987743

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.46  E-value=2.9e-13  Score=81.60  Aligned_cols=66  Identities=18%  Similarity=0.286  Sum_probs=57.8

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhh---cCCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ---GNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ..++.+|||+|||+|.+++.+++.. +..+++++|+++.+++.|++++..   ++    ...+++++++|+.+.
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~----l~~~v~~~~~D~~~~  102 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAA----FSARIEVLEADVTLR  102 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTT----TGGGEEEEECCTTCC
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCC----CcceEEEEeCCHHHH
Confidence            3466799999999999999999986 567999999999999999999987   66    445799999998765

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.46  E-value=3.6e-13  Score=80.02  Aligned_cols=66  Identities=17%  Similarity=0.310  Sum_probs=57.6

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .++.+|||+|||+|..+..+++..++..+++++|+++.+++.+++++...+    ...+++++.+|+.+.
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g----~~~~v~~~~~d~~~~  124 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG----LENKIFLKLGSALET  124 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT----CGGGEEEEESCHHHH
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCCEEEEECCHHHH
Confidence            467799999999999999999997557899999999999999999998877    345699999998764

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.46  E-value=5.9e-13  Score=77.89  Aligned_cols=64  Identities=19%  Similarity=0.176  Sum_probs=54.1

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCc----ceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNI----KFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|.++..+++.. +..+++++|+|+.+++.+++++...+    ...    +++++.+|+..
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~~~~~v~~~~~d~~~   95 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDR----LPEMQRKRISLFQSSLVY   95 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGG----SCHHHHTTEEEEECCSSS
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhc----cccccCcceEEEeCcccc
Confidence            467899999999999999999875 55799999999999999999987655    222    79999998743

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.46  E-value=7.2e-13  Score=77.75  Aligned_cols=62  Identities=23%  Similarity=0.280  Sum_probs=49.9

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||+|..+..+++..+ .++|+|+|+|+.+++.+.+..+..       .++.++.+|+.+
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~-------~~v~~~~~d~~~  116 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER-------NNIIPLLFDASK  116 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC-------SSEEEECSCTTC
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC-------CCeEEEEcCCCC
Confidence            45788999999999999999999874 679999999999887777665542       256777777665

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.46  E-value=9.6e-13  Score=77.46  Aligned_cols=62  Identities=26%  Similarity=0.441  Sum_probs=55.2

Q ss_pred             cCCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          13 NLKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        13 ~~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      ...++.+|||+||| +|.++..+++..  ..+++++|+++.+++.+++++..++     . +++++.+|+.
T Consensus        52 ~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-----~-~v~~~~~d~~  114 (230)
T 3evz_A           52 FLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNN-----S-NVRLVKSNGG  114 (230)
T ss_dssp             TCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTT-----C-CCEEEECSSC
T ss_pred             hcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhC-----C-CcEEEeCCch
Confidence            45788899999999 999999999986  5689999999999999999999887     3 8899999963

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.46  E-value=2.2e-13  Score=83.18  Aligned_cols=49  Identities=22%  Similarity=0.303  Sum_probs=42.2

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG   64 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~   64 (88)
                      .++.+|||+|||+|.++..++..+ +..+|+|+|+++.+++.|++++...
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~-~~~~v~gvDis~~~i~~A~~~~~~~   93 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKW-GPSRMVGLDIDSRLIHSARQNIRHY   93 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHT-CCSEEEEEESCHHHHHHHHHTC---
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHhh
Confidence            357899999999999999999997 5679999999999999999997654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.46  E-value=2.4e-13  Score=83.25  Aligned_cols=72  Identities=13%  Similarity=0.062  Sum_probs=59.7

Q ss_pred             HHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           8 ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         8 ~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.+...+.++.+|||+|||+|..+..++....+..+++++|+++.+++.+++++...+    ...+++++.+|+.+
T Consensus       110 ~~l~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~  181 (305)
T 3ocj_A          110 RALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA----LAGQITLHRQDAWK  181 (305)
T ss_dssp             HHHHHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST----TGGGEEEEECCGGG
T ss_pred             HHHHhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC----CCCceEEEECchhc
Confidence            3334446788999999999999999986333467899999999999999999998877    45679999999876

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.45  E-value=7e-13  Score=77.06  Aligned_cols=60  Identities=25%  Similarity=0.353  Sum_probs=53.7

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+|||+|||+|.++..+++.  ++.+++++|+++.+++.+++++...+    ...+++++.+|+.+
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~  104 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADAN----LNDRIQIVQGDVHN  104 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECBTTB
T ss_pred             CEEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhcc----ccCceEEEEcCHHH
Confidence            39999999999999999998  46799999999999999999998877    45689999999876

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.45  E-value=5.1e-13  Score=84.32  Aligned_cols=66  Identities=17%  Similarity=0.237  Sum_probs=56.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCC--cceEEeeCCcccccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPN--IKFEPQTGEGDIQYL   86 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~   86 (88)
                      ++.+|||+|||+|.+++.+++.. |..+|+++|+++.+++.+++++..++    ..  .++++..+|+.+.++
T Consensus       222 ~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ng----l~~~~~v~~~~~D~~~~~~  289 (375)
T 4dcm_A          222 LEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNM----PEALDRCEFMINNALSGVE  289 (375)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHC----GGGGGGEEEEECSTTTTCC
T ss_pred             CCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcC----CCcCceEEEEechhhccCC
Confidence            45799999999999999999985 67899999999999999999998876    22  257889999887543

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.45  E-value=9.2e-13  Score=79.13  Aligned_cols=66  Identities=14%  Similarity=0.190  Sum_probs=57.6

Q ss_pred             CC-CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          14 LK-PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        14 ~~-~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      .. ++.+|||+|||+|.++..+++.. + .+++++|+++.+++.|++++..++    ...+++++++|+.+..
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~-~-~~v~gvDi~~~~~~~a~~n~~~~~----~~~~v~~~~~D~~~~~  112 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRT-K-AKIVGVEIQERLADMAKRSVAYNQ----LEDQIEIIEYDLKKIT  112 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTC-C-CEEEEECCSHHHHHHHHHHHHHTT----CTTTEEEECSCGGGGG
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhc-C-CcEEEEECCHHHHHHHHHHHHHCC----CcccEEEEECcHHHhh
Confidence            45 67899999999999999999885 2 389999999999999999999887    5568999999987643

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.45  E-value=9.9e-13  Score=75.08  Aligned_cols=63  Identities=17%  Similarity=0.223  Sum_probs=54.2

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcc--eEEeeCCccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIK--FEPQTGEGDIQY   85 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~d~~~~~   85 (88)
                      .++.+|||+|||+|.++..+++.   ..+++++|+++.+++.++++...++     ..+  +++..+|+.+.+
T Consensus        51 ~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~d~~~~~  115 (194)
T 1dus_A           51 DKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNN-----LDNYDIRVVHSDLYENV  115 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTT-----CTTSCEEEEECSTTTTC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcC-----CCccceEEEECchhccc
Confidence            46789999999999999998887   4589999999999999999998876     344  999999987643

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.45  E-value=1.9e-12  Score=79.51  Aligned_cols=64  Identities=14%  Similarity=0.100  Sum_probs=56.6

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||+|.++..+++..  +.+|+++|+++.+++.++++...++    ...+++++.+|+.+
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~  178 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELR----IDDHVRSRVCNMLD  178 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECCTTS
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcC----CCCceEEEECChhc
Confidence            3467899999999999999999986  4689999999999999999999877    55689999999875

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.45  E-value=3.6e-13  Score=79.90  Aligned_cols=65  Identities=20%  Similarity=0.241  Sum_probs=56.9

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|..+..+++..+++++++++|+++.+++.|++++...+    ...+++++.+|+.+
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g----~~~~i~~~~~d~~~  135 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG----VAEKISLRLGPALA  135 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEESCHHH
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEcCHHH
Confidence            356799999999999999999987557899999999999999999998877    44679999999765

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.45  E-value=6.2e-13  Score=79.90  Aligned_cols=72  Identities=31%  Similarity=0.394  Sum_probs=59.4

Q ss_pred             HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.+++.+.....++.+|||+|||+|.+++.+++.. +  +++++|+++.+++.++++...++     .. +++..+|+.+
T Consensus       108 ~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g-~--~v~gvDi~~~~v~~a~~n~~~~~-----~~-v~~~~~d~~~  178 (254)
T 2nxc_A          108 RLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLG-G--KALGVDIDPMVLPQAEANAKRNG-----VR-PRFLEGSLEA  178 (254)
T ss_dssp             HHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTT-C--EEEEEESCGGGHHHHHHHHHHTT-----CC-CEEEESCHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhC-C--eEEEEECCHHHHHHHHHHHHHcC-----Cc-EEEEECChhh
Confidence            34566666556788899999999999999988863 3  89999999999999999999877     33 8888888765


Q ss_pred             c
Q psy8023          84 Q   84 (88)
Q Consensus        84 ~   84 (88)
                      .
T Consensus       179 ~  179 (254)
T 2nxc_A          179 A  179 (254)
T ss_dssp             H
T ss_pred             c
Confidence            4

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.44  E-value=1.1e-12  Score=79.56  Aligned_cols=64  Identities=16%  Similarity=0.156  Sum_probs=55.2

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|.++..+++..  +.+++++|+|+.+++.+++++...+    ...++++..+|+.+
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~  125 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSE----NLRSKRVLLAGWEQ  125 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCC----CCSCEEEEESCGGG
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC----CCCCeEEEECChhh
Confidence            3567899999999999999999776  3499999999999999999998766    45689999999753

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.44  E-value=9.8e-13  Score=82.18  Aligned_cols=65  Identities=22%  Similarity=0.195  Sum_probs=57.9

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|.+++.++...++..+++|+|+++.+++.|++|++..+    . .++++.++|+.+
T Consensus       201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g----~-~~i~~~~~D~~~  265 (354)
T 3tma_A          201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASG----L-SWIRFLRADARH  265 (354)
T ss_dssp             CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTT----C-TTCEEEECCGGG
T ss_pred             CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcC----C-CceEEEeCChhh
Confidence            4567899999999999999999986556789999999999999999999887    3 489999999876

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.44  E-value=6.3e-13  Score=79.98  Aligned_cols=63  Identities=33%  Similarity=0.563  Sum_probs=55.5

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHH------HHHHHHHhhhhcCCCCCCCcceEEeeCC
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPE------VLQFTHYNIQQGNPELLPNIKFEPQTGE   80 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~------~~~~a~~~~~~~~~~~~~~~~~~~~~~d   80 (88)
                      +.++.+|||+|||+|.++..+++..++..+++++|+|+.      +++.+++++...+    ...+++++.+|
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~----~~~~v~~~~~d  109 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP----LGDRLTVHFNT  109 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST----TGGGEEEECSC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC----CCCceEEEECC
Confidence            567889999999999999999998756689999999997      9999999998766    34689999998

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.44  E-value=1.5e-12  Score=79.16  Aligned_cols=64  Identities=17%  Similarity=0.115  Sum_probs=56.2

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|..+..+++..  +.+++++|+++.+++.++++....+    ...+++++.+|+.+
T Consensus        80 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~  143 (297)
T 2o57_A           80 LQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAG----LADNITVKYGSFLE  143 (297)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHT----CTTTEEEEECCTTS
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcC----CCcceEEEEcCccc
Confidence            4677899999999999999999986  4589999999999999999998776    45689999999765

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.44  E-value=1e-12  Score=74.89  Aligned_cols=64  Identities=23%  Similarity=0.282  Sum_probs=55.7

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ..++.+|||+|||+|..+..+++..   .+++++|+++.+++.+++++..++    ...++++..+|+.+.
T Consensus        31 ~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~   94 (192)
T 1l3i_A           31 PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHG----LGDNVTLMEGDAPEA   94 (192)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTT----CCTTEEEEESCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcC----CCcceEEEecCHHHh
Confidence            5677899999999999999998875   589999999999999999998876    336899999998763

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.44  E-value=2e-12  Score=78.28  Aligned_cols=64  Identities=14%  Similarity=0.124  Sum_probs=54.8

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ..++.+|||+|||+|.++..+++.   +.+++++|+++.+++.+++++...+    ...+++++.+|+.+.
T Consensus        66 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~  129 (285)
T 4htf_A           66 GPQKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKG----VSDNMQFIHCAAQDV  129 (285)
T ss_dssp             CSSCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-C----CGGGEEEEESCGGGT
T ss_pred             CCCCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC----CCcceEEEEcCHHHh
Confidence            345679999999999999999887   4589999999999999999998876    447899999998764

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.44  E-value=1.1e-12  Score=80.00  Aligned_cols=63  Identities=27%  Similarity=0.378  Sum_probs=54.4

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|.++..+++..   .+++++|+++.+++.++++....+    ...+++++.+|+.+
T Consensus        26 ~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~~~D~~~   88 (285)
T 1zq9_A           26 LRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTP----VASKLQVLVGDVLK   88 (285)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTST----TGGGEEEEESCTTT
T ss_pred             CCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEEcceec
Confidence            4567899999999999999999873   379999999999999999987665    33689999999875

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.43  E-value=2.1e-12  Score=75.57  Aligned_cols=70  Identities=21%  Similarity=0.263  Sum_probs=57.5

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+...+....+++.+|||+|||+|.++..+++.. +  +++++|+++.+++.++++...++      .+++++.+|+.+
T Consensus        27 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~   96 (227)
T 1ve3_A           27 TLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG-F--EVVGVDISEDMIRKAREYAKSRE------SNVEFIVGDARK   96 (227)
T ss_dssp             HHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTT-C--EEEEEESCHHHHHHHHHHHHHTT------CCCEEEECCTTS
T ss_pred             HHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcC-C--EEEEEECCHHHHHHHHHHHHhcC------CCceEEECchhc
Confidence            3455555556678899999999999999988874 3  89999999999999999987654      467888888765

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.43  E-value=1.3e-12  Score=83.46  Aligned_cols=73  Identities=15%  Similarity=0.143  Sum_probs=57.1

Q ss_pred             HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh-------hcCCCCCC-CcceE
Q psy8023           4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ-------QGNPELLP-NIKFE   75 (88)
Q Consensus         4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~-------~~~~~~~~-~~~~~   75 (88)
                      ..++..+.  +.++.+|||+|||+|.+++.++... +..+++|+|+++.+++.|+++..       .++    . ..+++
T Consensus       163 ~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~-g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~G----l~~~rVe  235 (438)
T 3uwp_A          163 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYG----KKHAEYT  235 (438)
T ss_dssp             HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHC-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHT----BCCCEEE
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC----CCCCCeE
Confidence            34444443  6788999999999999999999875 34469999999999999988653       233    2 36899


Q ss_pred             EeeCCccc
Q psy8023          76 PQTGEGDI   83 (88)
Q Consensus        76 ~~~~d~~~   83 (88)
                      |+++|+.+
T Consensus       236 fi~GD~~~  243 (438)
T 3uwp_A          236 LERGDFLS  243 (438)
T ss_dssp             EEECCTTS
T ss_pred             EEECcccC
Confidence            99999875

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.43  E-value=1.2e-12  Score=78.37  Aligned_cols=69  Identities=25%  Similarity=0.464  Sum_probs=56.8

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+++.+.  ..++.+|||+|||+|.++..+++.. +  +++++|+|+.+++.++++....+     ..+++++.+|+.+
T Consensus        28 ~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~-~--~v~gvD~s~~~l~~a~~~~~~~~-----~~~v~~~~~d~~~   96 (260)
T 1vl5_A           28 KLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV-K--KVVAFDLTEDILKVARAFIEGNG-----HQQVEYVQGDAEQ   96 (260)
T ss_dssp             HHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGS-S--EEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCC-C
T ss_pred             HHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhC-C--EEEEEeCCHHHHHHHHHHHHhcC-----CCceEEEEecHHh
Confidence            3445444  4577899999999999999998875 3  89999999999999999998766     4579999999865

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.43  E-value=1.7e-12  Score=80.22  Aligned_cols=65  Identities=22%  Similarity=0.240  Sum_probs=58.4

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++++++     ..+++++++|+.+
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g-----~~~v~~~~~D~~~  180 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG-----VLNVILFHSSSLH  180 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT-----CCSEEEESSCGGG
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhC-----CCeEEEEECChhh
Confidence            5678899999999999999999987556899999999999999999999887     5579999999875

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.43  E-value=1.3e-12  Score=79.68  Aligned_cols=61  Identities=21%  Similarity=0.308  Sum_probs=51.8

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGS-NGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|.++..+++...+ +.+|+++|+++.+++.++++.   .      .+++++++|+.+
T Consensus        40 ~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~---~------~~v~~i~~D~~~  101 (279)
T 3uzu_A           40 PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF---G------ELLELHAGDALT  101 (279)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH---G------GGEEEEESCGGG
T ss_pred             CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc---C------CCcEEEECChhc
Confidence            467789999999999999999998633 356999999999999999983   2      368999999876

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.42  E-value=2.4e-12  Score=77.74  Aligned_cols=68  Identities=26%  Similarity=0.385  Sum_probs=57.4

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc-CCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG-NPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +.++.+|||+|||+|.++..+++..++..+++++|+++.+++.+++++..+ +.   ...++++..+|+.+.
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~---~~~~v~~~~~d~~~~  165 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ---PPDNWRLVVSDLADS  165 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS---CCTTEEEECSCGGGC
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC---CCCcEEEEECchHhc
Confidence            567889999999999999999998766789999999999999999999775 20   245788999888653

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.42  E-value=1.8e-12  Score=76.68  Aligned_cols=62  Identities=23%  Similarity=0.373  Sum_probs=53.5

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||+|.++..+++..+ ..+|+++|+++.+++.++++.+.+       .++.++.+|+.+
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-------~~v~~~~~d~~~  133 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER-------ENIIPILGDANK  133 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC-------TTEEEEECCTTC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC-------CCeEEEECCCCC
Confidence            35678999999999999999999874 679999999999999999987652       478888888875

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.42  E-value=1.4e-12  Score=82.22  Aligned_cols=65  Identities=23%  Similarity=0.147  Sum_probs=57.4

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|.+++.++... +.++++|+|+++.+++.|++++..++    ...++++.++|+.+
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~g----l~~~i~~~~~D~~~  279 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAAG----VLDKIKFIQGDATQ  279 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHTT----CGGGCEEEECCGGG
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcC----CCCceEEEECChhh
Confidence            4677899999999999999999875 44589999999999999999999887    44789999999876

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.42  E-value=7.7e-13  Score=79.82  Aligned_cols=68  Identities=15%  Similarity=0.237  Sum_probs=55.8

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ++++.+.  ..++.+|||+|||+|.++..+++..   .+|+++|+++.+++.+++++..       ..+++++++|+.+.
T Consensus        20 ~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~-------~~~v~~i~~D~~~~   87 (255)
T 3tqs_A           20 KIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQ-------QKNITIYQNDALQF   87 (255)
T ss_dssp             HHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTT-------CTTEEEEESCTTTC
T ss_pred             HHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhh-------CCCcEEEEcchHhC
Confidence            3444443  4677899999999999999999863   5899999999999999998865       34799999998763

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.42  E-value=3.9e-12  Score=73.83  Aligned_cols=61  Identities=28%  Similarity=0.281  Sum_probs=53.3

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|.++..+++..  ..+++++|+++.+++.++++...++     . +++++.+|+.+
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~-----~-~~~~~~~d~~~  108 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLG--AKEVICVEVDKEAVDVLIENLGEFK-----G-KFKVFIGDVSE  108 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHTGGGT-----T-SEEEEESCGGG
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHcC-----C-CEEEEECchHH
Confidence            467899999999999999998862  3479999999999999999998876     3 79999999876

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.42  E-value=1.6e-12  Score=79.81  Aligned_cols=64  Identities=20%  Similarity=0.154  Sum_probs=55.5

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|.++..+++..  +.+++++|+|+.+++.++++....+    ...++++..+|+.+
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~  151 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASID----TNRSRQVLLQGWED  151 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSC----CSSCEEEEESCGGG
T ss_pred             CCCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEECChHH
Confidence            3567899999999999999999986  4589999999999999999998876    45679999998754

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.42  E-value=2.3e-12  Score=76.19  Aligned_cols=63  Identities=30%  Similarity=0.378  Sum_probs=54.0

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||+|.++..+++..++..+++++|+++.+++.+.++.+.+       .+++++.+|+.+
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-------~~v~~~~~d~~~  137 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-------TNIIPVIEDARH  137 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-------TTEEEECSCTTC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-------CCeEEEEcccCC
Confidence            456789999999999999999998766679999999999988888887763       368888888876

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.42  E-value=1.1e-12  Score=79.65  Aligned_cols=64  Identities=17%  Similarity=0.212  Sum_probs=56.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|.++..+++.+++..+++++|+|+.+++.++++....+      .++++..+|+.+
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------~~v~~~~~d~~~   83 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP------YDSEFLEGDATE   83 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS------SEEEEEESCTTT
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC------CceEEEEcchhh
Confidence            3567899999999999999999987445899999999999999999988755      389999999875

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.41  E-value=1.9e-12  Score=76.16  Aligned_cols=63  Identities=29%  Similarity=0.477  Sum_probs=54.7

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||+|.++..+++..++..+++++|+++.+++.++++.+.+       .+++++.+|+.+
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-------~~v~~~~~d~~~  133 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-------RNIVPILGDATK  133 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-------TTEEEEECCTTC
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-------CCCEEEEccCCC
Confidence            356789999999999999999998766679999999999999999988753       468888988876

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.41  E-value=2.3e-12  Score=75.97  Aligned_cols=61  Identities=18%  Similarity=0.366  Sum_probs=53.3

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|..+..+++.. +..+++++|+|+.+++.++++....       .+++++.+|+.+
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~d~~~  103 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGN-------LKVKYIEADYSK  103 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSC-------TTEEEEESCTTT
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccC-------CCEEEEeCchhc
Confidence            467899999999999999999986 6789999999999999999987653       278888888765

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.41  E-value=1e-12  Score=80.73  Aligned_cols=62  Identities=21%  Similarity=0.283  Sum_probs=50.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|.++..+++.   ..+|+++|+++.+++.++++...++     ..+++++.+|+.+
T Consensus        40 ~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~-----~~~v~~~~~D~~~  101 (299)
T 2h1r_A           40 IKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEG-----YNNLEVYEGDAIK  101 (299)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTT-----CCCEEC----CCS
T ss_pred             CCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcC-----CCceEEEECchhh
Confidence            457789999999999999999886   3489999999999999999988765     4679999999865

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.41  E-value=2.2e-12  Score=78.21  Aligned_cols=65  Identities=18%  Similarity=0.175  Sum_probs=57.5

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|..+..+++..+...+|+++|+++.+++.++++++.++     ..+++++.+|+.+
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g-----~~~v~~~~~D~~~  145 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMG-----VLNTIIINADMRK  145 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEESCHHH
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhC-----CCcEEEEeCChHh
Confidence            5678899999999999999999987444899999999999999999999887     4589999999764

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.40  E-value=1.1e-12  Score=82.91  Aligned_cols=62  Identities=24%  Similarity=0.274  Sum_probs=53.9

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++++|||+|||+|.++...++..  ..+|+++|.|+ +++.|+++++.++    ...+++++.+|+++
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aG--A~~V~ave~s~-~~~~a~~~~~~n~----~~~~i~~i~~~~~~  143 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAG--ARRVYAVEASA-IWQQAREVVRFNG----LEDRVHVLPGPVET  143 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECST-THHHHHHHHHHTT----CTTTEEEEESCTTT
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhC--CCEEEEEeChH-HHHHHHHHHHHcC----CCceEEEEeeeeee
Confidence            368899999999999998888764  34899999997 8899999999998    67889999999875

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.40  E-value=2.3e-12  Score=77.62  Aligned_cols=63  Identities=27%  Similarity=0.345  Sum_probs=56.6

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++....+     ..+++++.+|+.+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~   98 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNG-----IKNVKFLQANIFS   98 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCGGG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC-----CCCcEEEEccccc
Confidence            578899999999999999999985 67899999999999999999998876     4579999999875

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.40  E-value=6.1e-12  Score=78.04  Aligned_cols=78  Identities=22%  Similarity=0.262  Sum_probs=60.7

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC------CCCCCCcceEEee
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN------PELLPNIKFEPQT   78 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~~   78 (88)
                      .++..+.  +.++.+|||+|||+|.++..+++..++..+++++|+++.+++.|++++...+      .......++++..
T Consensus        96 ~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~  173 (336)
T 2b25_A           96 MILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  173 (336)
T ss_dssp             HHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence            3444443  6788899999999999999999987667899999999999999999987521      0000135799999


Q ss_pred             CCcccc
Q psy8023          79 GEGDIQ   84 (88)
Q Consensus        79 ~d~~~~   84 (88)
                      +|+.+.
T Consensus       174 ~d~~~~  179 (336)
T 2b25_A          174 KDISGA  179 (336)
T ss_dssp             SCTTCC
T ss_pred             CChHHc
Confidence            998764

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.40  E-value=1.8e-12  Score=79.69  Aligned_cols=60  Identities=23%  Similarity=0.226  Sum_probs=52.8

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|.++..+++.   ..+|+++|+++.+++.+++++..       ..+++++++|+.+
T Consensus        48 ~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~~-------~~~v~vi~gD~l~  107 (295)
T 3gru_A           48 LTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKEL-------YNNIEIIWGDALK  107 (295)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHHH-------CSSEEEEESCTTT
T ss_pred             CCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhcc-------CCCeEEEECchhh
Confidence            457789999999999999999997   34799999999999999999873       3579999999886

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.40  E-value=3e-12  Score=75.64  Aligned_cols=71  Identities=25%  Similarity=0.345  Sum_probs=57.8

Q ss_pred             HHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023           3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      +..+.+.+...++++.+|||+|||+|.++..+++.    .+++++|+++.+++.++++....+      .+++++.+|+.
T Consensus        20 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~   89 (243)
T 3d2l_A           20 YPEWVAWVLEQVEPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN------RHVDFWVQDMR   89 (243)
T ss_dssp             HHHHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT------CCCEEEECCGG
T ss_pred             HHHHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC------CceEEEEcChh
Confidence            34556666666778899999999999999888775    479999999999999999987654      35778888765


Q ss_pred             c
Q psy8023          83 I   83 (88)
Q Consensus        83 ~   83 (88)
                      +
T Consensus        90 ~   90 (243)
T 3d2l_A           90 E   90 (243)
T ss_dssp             G
T ss_pred             h
Confidence            4

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.40  E-value=3.9e-12  Score=73.07  Aligned_cols=61  Identities=16%  Similarity=0.071  Sum_probs=52.8

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|..+..+++.   +.+++++|+++.+++.++++....+     ..++++..+|+.+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~   91 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIEN-----LDNLHTRVVDLNN   91 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHT-----CTTEEEEECCGGG
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCC-----CCCcEEEEcchhh
Confidence            45679999999999999999886   3489999999999999999998766     4568999998765

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.40  E-value=4.2e-12  Score=81.44  Aligned_cols=64  Identities=19%  Similarity=0.116  Sum_probs=53.3

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHH-------HHhhhhcCCCCCC-CcceEEeeCCcc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFT-------HYNIQQGNPELLP-NIKFEPQTGEGD   82 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a-------~~~~~~~~~~~~~-~~~~~~~~~d~~   82 (88)
                      ..++.+|||+|||+|..+..+++.. +..+|+|+|+++.+++.|       ++++...+    . ..+++++.+|..
T Consensus       240 l~~g~~VLDLGCGsG~la~~LA~~~-g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~G----l~~~nV~~i~gD~~  311 (433)
T 1u2z_A          240 LKKGDTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKKRCKLYG----MRLNNVEFSLKKSF  311 (433)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT----BCCCCEEEEESSCS
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcC----CCCCceEEEEcCcc
Confidence            4678899999999999999999986 445899999999999988       88887655    3 368999887654

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.39  E-value=1.8e-12  Score=82.05  Aligned_cols=65  Identities=12%  Similarity=0.039  Sum_probs=56.0

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCc-ceEEeeCCccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNI-KFEPQTGEGDIQY   85 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~d~~~~~   85 (88)
                      .++.+|||+|||+|.+++.++...  ..+|+++|+|+.+++.|++|++.++    ... +++++++|+.+.+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g--a~~V~~vD~s~~al~~A~~N~~~n~----~~~~~v~~~~~D~~~~l  276 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANH----LDMANHQLVVMDVFDYF  276 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTT----CCCTTEEEEESCHHHHH
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcC----CCccceEEEECCHHHHH
Confidence            677899999999999999999852  3489999999999999999999987    333 8999999987643

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.39  E-value=5.7e-12  Score=74.20  Aligned_cols=62  Identities=34%  Similarity=0.597  Sum_probs=53.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ..++.+|||+|||+|.++..+++..   .+++++|+++.+++.++++....+       +++++.+|+.+.+
T Consensus        68 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~-------~v~~~~~d~~~~~  129 (231)
T 1vbf_A           68 LHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN-------NIKLILGDGTLGY  129 (231)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS-------SEEEEESCGGGCC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC-------CeEEEECCccccc
Confidence            4677899999999999999999874   589999999999999999987632       7889999887643

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.39  E-value=1.9e-12  Score=77.45  Aligned_cols=69  Identities=19%  Similarity=0.262  Sum_probs=55.8

Q ss_pred             HHHHHHhhcC--CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023           5 RALELLKDNL--KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus         5 ~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      .+.+.+....  .++.+|||+|||+|.++..+++..   .+++++|+++.+++.++++...       ..+++++++|+.
T Consensus        17 ~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~-------~~~v~~~~~D~~   86 (244)
T 1qam_A           17 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD-------HDNFQVLNKDIL   86 (244)
T ss_dssp             HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT-------CCSEEEECCCGG
T ss_pred             HHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhcc-------CCCeEEEEChHH
Confidence            3444554433  467799999999999999999874   5799999999999999998764       247899999987


Q ss_pred             c
Q psy8023          83 I   83 (88)
Q Consensus        83 ~   83 (88)
                      +
T Consensus        87 ~   87 (244)
T 1qam_A           87 Q   87 (244)
T ss_dssp             G
T ss_pred             h
Confidence            6

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.39  E-value=4.9e-12  Score=78.13  Aligned_cols=65  Identities=20%  Similarity=0.194  Sum_probs=58.8

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|..+..++...++.++|+++|+++.+++.+++++++++     ..+++++.+|+.+
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g-----~~~v~~~~~D~~~  164 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG-----VSCCELAEEDFLA  164 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCGGG
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeCChHh
Confidence            5678899999999999999999987667899999999999999999999987     5679999999765

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.39  E-value=1.6e-12  Score=76.76  Aligned_cols=62  Identities=15%  Similarity=0.083  Sum_probs=52.5

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ++.+|||+|||+|.++..+++   +..+++++|+++.+++.++++....+    ...+++++.+|+.+.
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~  127 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMAS---PERFVVGLDISESALAKANETYGSSP----KAEYFSFVKEDVFTW  127 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSG----GGGGEEEECCCTTTC
T ss_pred             CCCCEEEeCCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccC----CCcceEEEECchhcC
Confidence            445999999999999998866   35689999999999999999988754    356899999998763

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.39  E-value=1.7e-12  Score=81.68  Aligned_cols=72  Identities=19%  Similarity=0.212  Sum_probs=58.1

Q ss_pred             HHHHHHhhcCC-CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           5 RALELLKDNLK-PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         5 ~~~~~~~~~~~-~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+..++..... .+.+|||+|||+|.+++.+++..   .+|+++|+++.+++.|++|.+.++     ..+++++.+|+.+
T Consensus       201 ~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng-----~~~v~~~~~d~~~  272 (369)
T 3bt7_A          201 QMLEWALDVTKGSKGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANH-----IDNVQIIRMAAEE  272 (369)
T ss_dssp             HHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTT-----CCSEEEECCCSHH
T ss_pred             HHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcC-----CCceEEEECCHHH
Confidence            34444443332 35789999999999999988753   479999999999999999999887     5689999999876


Q ss_pred             c
Q psy8023          84 Q   84 (88)
Q Consensus        84 ~   84 (88)
                      .
T Consensus       273 ~  273 (369)
T 3bt7_A          273 F  273 (369)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.38  E-value=3.3e-12  Score=75.75  Aligned_cols=62  Identities=24%  Similarity=0.348  Sum_probs=54.3

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|.++..+++..   .+++++|+++.+++.++++....+     ..++++..+|+.+
T Consensus        19 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~   80 (239)
T 1xxl_A           19 CRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKG-----VENVRFQQGTAES   80 (239)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHT-----CCSEEEEECBTTB
T ss_pred             cCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcC-----CCCeEEEeccccc
Confidence            5778899999999999999998874   389999999999999999998776     4578999998765

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.38  E-value=2.8e-12  Score=84.49  Aligned_cols=62  Identities=16%  Similarity=0.300  Sum_probs=53.7

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ...+.+|||+|||.|.++..+++.   +.+|+|+|.++.+++.|+......+     ..++++.++++++
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~-----~~~~~~~~~~~~~  125 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENP-----DFAAEFRVGRIEE  125 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTST-----TSEEEEEECCHHH
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcC-----CCceEEEECCHHH
Confidence            345679999999999999999986   4589999999999999999988766     4579999998765

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.38  E-value=6.7e-12  Score=74.45  Aligned_cols=65  Identities=12%  Similarity=0.222  Sum_probs=53.6

Q ss_pred             HHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           8 ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         8 ~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..+.....++.+|||+|||+|.++..+++.. +  +|+++|+|+.+++.++++..        ..+++++++|+.+
T Consensus        48 ~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~-~--~v~gvD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~  112 (245)
T 3ggd_A           48 PRFELLFNPELPLIDFACGNGTQTKFLSQFF-P--RVIGLDVSKSALEIAAKENT--------AANISYRLLDGLV  112 (245)
T ss_dssp             HHHTTTSCTTSCEEEETCTTSHHHHHHHHHS-S--CEEEEESCHHHHHHHHHHSC--------CTTEEEEECCTTC
T ss_pred             HHHhhccCCCCeEEEEcCCCCHHHHHHHHhC-C--CEEEEECCHHHHHHHHHhCc--------ccCceEEECcccc
Confidence            3333345677899999999999999999985 3  79999999999999999873        2368999999876

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.38  E-value=2e-12  Score=76.95  Aligned_cols=62  Identities=19%  Similarity=0.126  Sum_probs=51.8

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|..+..+++..  ..+++++|+++.+++.|+++....+      .+++++.+|+.+
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~--~~~v~~id~~~~~~~~a~~~~~~~~------~~~~~~~~~a~~  119 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLWED  119 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSC--EEEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCHHH
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhC--CcEEEEEeCCHHHHHHHHHHHhhCC------CceEEEeehHHh
Confidence            3678899999999999999988764  3589999999999999999988754      567778777654

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.38  E-value=4.6e-12  Score=76.76  Aligned_cols=69  Identities=19%  Similarity=0.199  Sum_probs=57.2

Q ss_pred             HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..+++.+..  .++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.++++...++     . +++++.+|+.+
T Consensus       110 ~~~~~~~~~--~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~-----~-~~~~~~~d~~~  178 (286)
T 3m70_A          110 GDVVDAAKI--ISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKEN-----L-NISTALYDINA  178 (286)
T ss_dssp             HHHHHHHHH--SCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT-----C-CEEEEECCGGG
T ss_pred             HHHHHHhhc--cCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcC-----C-ceEEEEecccc
Confidence            344555542  36789999999999999999987   3489999999999999999999876     3 88999999875

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.38  E-value=6.3e-12  Score=74.07  Aligned_cols=61  Identities=25%  Similarity=0.321  Sum_probs=50.7

Q ss_pred             cCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      ..+++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.++++    .      .+++++++|+.+.+|
T Consensus        45 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~----~------~~~~~~~~d~~~~~~  105 (226)
T 3m33_A           45 LLTPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN----A------PHADVYEWNGKGELP  105 (226)
T ss_dssp             HCCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH----C------TTSEEEECCSCSSCC
T ss_pred             cCCCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh----C------CCceEEEcchhhccC
Confidence            3567889999999999999999887   45899999999999999988    1      257788888865554

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.38  E-value=4.1e-12  Score=80.16  Aligned_cols=69  Identities=23%  Similarity=0.309  Sum_probs=56.5

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCC---CCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPE---LLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|.++..+++..++..+|+++|+++.+++.+++++..+...   +....+++++.+|+.+
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~  153 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIEN  153 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHH
Confidence            46789999999999999999998867789999999999999999998754100   0023689999999876

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.37  E-value=3e-12  Score=75.84  Aligned_cols=63  Identities=19%  Similarity=0.116  Sum_probs=52.4

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ..++.+|||+|||+|..+..+++..  ..+++++|+|+.+++.|+++....+      .+++++.+|+.+.
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~------~~v~~~~~d~~~~  120 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLWEDV  120 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCHHHH
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcC------CCeEEEecCHHHh
Confidence            3567899999999999999996642  3489999999999999999887644      5788999987653

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.37  E-value=6.5e-12  Score=73.70  Aligned_cols=69  Identities=20%  Similarity=0.270  Sum_probs=55.9

Q ss_pred             hcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          12 DNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        12 ~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++++.+|||+|||+|.++..++..   +.+++++|+++.+++.++++....+.......++++..+|+.+
T Consensus        26 ~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   94 (235)
T 3sm3_A           26 NYLQEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASS   94 (235)
T ss_dssp             HHCCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTS
T ss_pred             HhCCCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccc
Confidence            34567889999999999999999887   4489999999999999999988765221223578899988764

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.37  E-value=2.4e-12  Score=77.45  Aligned_cols=66  Identities=14%  Similarity=-0.077  Sum_probs=50.6

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhh---------cCCCC---CCCcceEEeeCCcc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ---------GNPEL---LPNIKFEPQTGEGD   82 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~---------~~~~~---~~~~~~~~~~~d~~   82 (88)
                      .++.+|||+|||+|..+..+++.   +.+|+|+|+|+.+++.|+++...         .+...   ....+++++++|+.
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~  143 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF  143 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence            46789999999999999999986   34899999999999999876531         00000   01357999999987


Q ss_pred             c
Q psy8023          83 I   83 (88)
Q Consensus        83 ~   83 (88)
                      +
T Consensus       144 ~  144 (252)
T 2gb4_A          144 D  144 (252)
T ss_dssp             T
T ss_pred             c
Confidence            6

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.37  E-value=3.9e-12  Score=81.44  Aligned_cols=71  Identities=18%  Similarity=0.181  Sum_probs=58.8

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .+...+.. ..++.+|||+|||+|.++..+++.   ..+|+++|+++.+++.|+++.+.++     .. ++++.+|+.+.
T Consensus       280 ~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ng-----l~-v~~~~~d~~~~  349 (425)
T 2jjq_A          280 NLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINN-----VD-AEFEVASDREV  349 (425)
T ss_dssp             HHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHT-----CC-EEEEECCTTTC
T ss_pred             HHHHHhhc-cCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcC-----Cc-EEEEECChHHc
Confidence            34444443 567789999999999999999886   3489999999999999999999887     44 99999998875


Q ss_pred             c
Q psy8023          85 Y   85 (88)
Q Consensus        85 ~   85 (88)
                      +
T Consensus       350 ~  350 (425)
T 2jjq_A          350 S  350 (425)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.37  E-value=5.3e-12  Score=79.00  Aligned_cols=67  Identities=19%  Similarity=0.119  Sum_probs=58.4

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      ..++.+|||+|||+|.++..+++.. ++.+++++|+ +.+++.+++++...+    ...+++++.+|..+.+|
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~  246 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAG----LADRVTVAEGDFFKPLP  246 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTT----CTTTEEEEECCTTSCCS
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcC----CCCceEEEeCCCCCcCC
Confidence            3567899999999999999999986 6789999999 999999999998876    45689999999877554

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.37  E-value=6.2e-12  Score=77.19  Aligned_cols=79  Identities=14%  Similarity=0.102  Sum_probs=57.0

Q ss_pred             HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCC--CCCCcceEEeeCCc
Q psy8023           4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPE--LLPNIKFEPQTGEG   81 (88)
Q Consensus         4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~d~   81 (88)
                      ..+++.+....+++.+|||+|||+|.++..+++.  +..+++++|+|+.+++.++++....+..  .....+++++++|+
T Consensus        22 ~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~   99 (313)
T 3bgv_A           22 GEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADS   99 (313)
T ss_dssp             HHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCT
T ss_pred             HHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecc
Confidence            3444555444457789999999999999998874  4668999999999999999988654100  00134788999998


Q ss_pred             ccc
Q psy8023          82 DIQ   84 (88)
Q Consensus        82 ~~~   84 (88)
                      .+.
T Consensus       100 ~~~  102 (313)
T 3bgv_A          100 SKE  102 (313)
T ss_dssp             TTS
T ss_pred             ccc
Confidence            753

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.37  E-value=8.4e-12  Score=72.36  Aligned_cols=70  Identities=19%  Similarity=0.126  Sum_probs=56.8

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+...+...+.++.+|||+|||+|.++..+++.. + .+++++|+++.+++.++++...       ..+++++.+|+.+
T Consensus        31 ~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~-~-~~v~~~D~s~~~~~~a~~~~~~-------~~~i~~~~~d~~~  100 (215)
T 2pxx_A           31 SFRALLEPELRPEDRILVLGCGNSALSYELFLGG-F-PNVTSVDYSSVVVAAMQACYAH-------VPQLRWETMDVRK  100 (215)
T ss_dssp             HHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTT-C-CCEEEEESCHHHHHHHHHHTTT-------CTTCEEEECCTTS
T ss_pred             HHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcC-C-CcEEEEeCCHHHHHHHHHhccc-------CCCcEEEEcchhc
Confidence            4556666667788899999999999999999874 2 2899999999999999998764       2367788888765

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.36  E-value=6.2e-12  Score=75.00  Aligned_cols=70  Identities=13%  Similarity=0.161  Sum_probs=55.5

Q ss_pred             HHHHHH---hhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023           5 RALELL---KDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG   81 (88)
Q Consensus         5 ~~~~~~---~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (88)
                      .+++.+   .....++.+|||+|||+|..+..+++.   ..+++++|+|+.+++.++++. ...     ..++++..+|+
T Consensus        25 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~~~-----~~~~~~~~~d~   95 (263)
T 2yqz_A           25 QIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI-AGV-----DRKVQVVQADA   95 (263)
T ss_dssp             HHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT-TTS-----CTTEEEEESCT
T ss_pred             HHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh-hcc-----CCceEEEEccc
Confidence            444555   223567889999999999999999886   358999999999999999998 322     46788999987


Q ss_pred             cc
Q psy8023          82 DI   83 (88)
Q Consensus        82 ~~   83 (88)
                      .+
T Consensus        96 ~~   97 (263)
T 2yqz_A           96 RA   97 (263)
T ss_dssp             TS
T ss_pred             cc
Confidence            54

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.36  E-value=4.6e-12  Score=78.88  Aligned_cols=65  Identities=15%  Similarity=0.255  Sum_probs=56.2

Q ss_pred             hcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          12 DNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        12 ~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ....++.+|||+|||+|.+++. +.   ...+|+++|+|+.+++.+++|++.++    ...+++++++|+.+.
T Consensus       191 ~~~~~~~~VLDlg~G~G~~~l~-a~---~~~~V~~vD~s~~ai~~a~~n~~~n~----l~~~v~~~~~D~~~~  255 (336)
T 2yx1_A          191 KKVSLNDVVVDMFAGVGPFSIA-CK---NAKKIYAIDINPHAIELLKKNIKLNK----LEHKIIPILSDVREV  255 (336)
T ss_dssp             HHCCTTCEEEETTCTTSHHHHH-TT---TSSEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEESCGGGC
T ss_pred             HhcCCCCEEEEccCccCHHHHh-cc---CCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEECChHHh
Confidence            3456788999999999999999 76   25689999999999999999999987    446899999998764

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.35  E-value=9.9e-12  Score=75.30  Aligned_cols=65  Identities=18%  Similarity=0.167  Sum_probs=55.2

Q ss_pred             cCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+.++.+|||+|||+|..+..+++.  +..+++++|+++.+++.++++....+    ...+++++.+|+.+
T Consensus        61 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~  125 (298)
T 1ri5_A           61 YTKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMK----RRFKVFFRAQDSYG  125 (298)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSC----CSSEEEEEESCTTT
T ss_pred             hCCCCCeEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHhcC----CCccEEEEECCccc
Confidence            3567889999999999999998876  34589999999999999999998766    34678999998765

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.35  E-value=9.6e-12  Score=73.99  Aligned_cols=60  Identities=27%  Similarity=0.345  Sum_probs=51.6

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|..+..+++.   +.+++++|+|+.+++.++++....+      .+++++.+|+.+
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~------~~v~~~~~d~~~   99 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERN------LKIEFLQGDVLE   99 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT------CCCEEEESCGGG
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcC------CceEEEECChhh
Confidence            45679999999999999999886   4589999999999999999988765      268888888765

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=99.35  E-value=4.4e-12  Score=76.38  Aligned_cols=68  Identities=15%  Similarity=0.113  Sum_probs=52.5

Q ss_pred             HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++.+.  ..++.+|||+|||+|.++. +. .. ...+|+++|+++.+++.++++...       ..+++++++|+.+
T Consensus        11 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~~-~~~~v~avEid~~~~~~a~~~~~~-------~~~v~~i~~D~~~   78 (252)
T 1qyr_A           11 DSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-GE-RLDQLTVIELDRDLAARLQTHPFL-------GPKLTIYQQDAMT   78 (252)
T ss_dssp             HHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-HT-TCSCEEEECCCHHHHHHHHTCTTT-------GGGEEEECSCGGG
T ss_pred             HHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-hC-CCCeEEEEECCHHHHHHHHHHhcc-------CCceEEEECchhh
Confidence            34444443  5677899999999999999 54 32 323499999999999999998754       2479999999876

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.35  E-value=5.4e-12  Score=76.74  Aligned_cols=58  Identities=21%  Similarity=0.234  Sum_probs=50.6

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++ +|||+|||+|.++..+++..   .+|+++|+++.+++.+++++..        .+++++++|+.+
T Consensus        45 ~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~~--------~~v~vi~~D~l~  102 (271)
T 3fut_A           45 PFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLSG--------LPVRLVFQDALL  102 (271)
T ss_dssp             CCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTTT--------SSEEEEESCGGG
T ss_pred             CCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcCC--------CCEEEEECChhh
Confidence            5667 99999999999999999974   4799999999999999998752        468999999876

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.35  E-value=6.1e-12  Score=78.32  Aligned_cols=63  Identities=16%  Similarity=0.036  Sum_probs=54.0

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCc-ceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNI-KFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~d~~~~   84 (88)
                      .++.+|||+|||+|.+++.++...   .+|+++|+|+.+++.+++|+..++    ... +++++++|+.+.
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~g---a~V~~VD~s~~al~~a~~n~~~~g----l~~~~v~~i~~D~~~~  215 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAAG---AEVTHVDASKKAIGWAKENQVLAG----LEQAPIRWICEDAMKF  215 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTT---CEEEEECSCHHHHHHHHHHHHHHT----CTTSCEEEECSCHHHH
T ss_pred             CCCCcEEEcccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcC----CCccceEEEECcHHHH
Confidence            466799999999999999999852   389999999999999999999877    333 599999998764

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.35  E-value=1.8e-11  Score=72.56  Aligned_cols=65  Identities=25%  Similarity=0.296  Sum_probs=56.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ..++.+|||+|||+|.++..+++.   ..+++++|+++.+++.++++...++    ...++++..+|+.+.+
T Consensus        89 ~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~~  153 (248)
T 2yvl_A           89 LNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFN----LGKNVKFFNVDFKDAE  153 (248)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTT----CCTTEEEECSCTTTSC
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcC----CCCcEEEEEcChhhcc
Confidence            457789999999999999999988   4589999999999999999998876    3467899999887644

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.35  E-value=1.4e-12  Score=77.91  Aligned_cols=59  Identities=24%  Similarity=0.244  Sum_probs=47.0

Q ss_pred             HHHHHHhhcCC--CCCeEEEecCCCChHHHHHHHH--hCCCceEEEEeCCHHHHHHHHHhhhhc
Q psy8023           5 RALELLKDNLK--PGAKVLDIGSGSGYLTACFADL--VGSNGEVTAVELIPEVLQFTHYNIQQG   64 (88)
Q Consensus         5 ~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~l~~~--~~~~~~v~~~D~~~~~~~~a~~~~~~~   64 (88)
                      .++..+.....  ++.+|||+|||+|.++..++..  . +..+++|+|+|+.+++.|++++..+
T Consensus        38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~-~~~~v~gvDis~~~l~~A~~~~~~~  100 (250)
T 1o9g_A           38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRR-SLRQVIASDVDPAPLELAAKNLALL  100 (250)
T ss_dssp             HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGG-GEEEEEEEESCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhcc-CCCeEEEEECCHHHHHHHHHHHHHh
Confidence            44454443332  4569999999999999999987  4 4568999999999999999988765

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.35  E-value=1.2e-11  Score=77.06  Aligned_cols=63  Identities=21%  Similarity=0.182  Sum_probs=54.4

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|.++..+++..  ..+|+++|+++ +++.|+++++.++    ...+++++.+|+.+
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g--~~~v~gvD~s~-~~~~a~~~~~~~~----~~~~i~~~~~d~~~  124 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAG--AKKVLGVDQSE-ILYQAMDIIRLNK----LEDTITLIKGKIEE  124 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEESST-HHHHHHHHHHHTT----CTTTEEEEESCTTT
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcC--CCEEEEEChHH-HHHHHHHHHHHcC----CCCcEEEEEeeHHH
Confidence            4577899999999999999998862  45899999997 9999999998877    44789999999875

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.35  E-value=5.8e-12  Score=78.73  Aligned_cols=63  Identities=19%  Similarity=0.223  Sum_probs=54.6

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .++.+|||+|||+|.++..+++.  +..+|+|+|+|+ +++.|+++++.++    ...+++++.+|+.+.
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~--g~~~v~gvD~s~-~l~~a~~~~~~~~----~~~~v~~~~~d~~~~  127 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECSS-ISDYAVKIVKANK----LDHVVTIIKGKVEEV  127 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTT----CTTTEEEEESCTTTC
T ss_pred             CCCCEEEEEeccchHHHHHHHHC--CCCEEEEECcHH-HHHHHHHHHHHcC----CCCcEEEEECcHHHc
Confidence            46789999999999999999987  345899999995 9999999999887    556799999998763

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.34  E-value=7.9e-12  Score=79.08  Aligned_cols=60  Identities=27%  Similarity=0.287  Sum_probs=52.2

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.+++++..++     . +++++.+|+.+.
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~-----~-~v~~~~~D~~~~  292 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANA-----L-KAQALHSDVDEA  292 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTT-----C-CCEEEECSTTTT
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcC-----C-CeEEEEcchhhc
Confidence            6779999999999999999987   3489999999999999999999876     2 378888887764

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.34  E-value=4.2e-12  Score=75.80  Aligned_cols=61  Identities=18%  Similarity=0.253  Sum_probs=52.2

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|.++..+++..  +.+++++|+|+.+++.++++....       .+++++.+|+.+
T Consensus        53 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~d~~~  113 (266)
T 3ujc_A           53 LNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN-------NKIIFEANDILT  113 (266)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC-------TTEEEEECCTTT
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC-------CCeEEEECcccc
Confidence            3567899999999999999999986  568999999999999999987652       578888888765

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.34  E-value=8.9e-12  Score=79.48  Aligned_cols=64  Identities=19%  Similarity=0.138  Sum_probs=55.8

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc--CCCCCCCcceEEeeCCccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG--NPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      +.++.+|||+|||+|..++.+++.   ..+|+++|+++.+++.+++|+..+  +     ..+++++++|+.+.+
T Consensus        91 l~~g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~g-----l~~i~~i~~Da~~~L  156 (410)
T 3ll7_A           91 IREGTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNE-----GKDVNILTGDFKEYL  156 (410)
T ss_dssp             SCTTCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCT-----TCEEEEEESCGGGSH
T ss_pred             cCCCCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccC-----CCcEEEEECcHHHhh
Confidence            345789999999999999998876   348999999999999999999987  6     378999999998743

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.34  E-value=4.5e-12  Score=78.52  Aligned_cols=61  Identities=16%  Similarity=0.277  Sum_probs=52.9

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .+|||+|||+|.++..+++.+ +..+++++|+++.+++.|++++....     ..+++++.+|+.+.
T Consensus        91 ~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~~~-----~~rv~v~~~Da~~~  151 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDIPR-----APRVKIRVDDARMV  151 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCCCC-----TTTEEEEESCHHHH
T ss_pred             CEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhccccC-----CCceEEEECcHHHH
Confidence            399999999999999999976 56799999999999999999987543     56889999988653

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.33  E-value=8.6e-12  Score=78.99  Aligned_cols=70  Identities=19%  Similarity=0.228  Sum_probs=58.0

Q ss_pred             HhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          10 LKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        10 ~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      +.....++.+|||+|||+|.+++.++..  ...+|+++|+++.+++.+++++..++    ...+++++.+|+.+.+
T Consensus       211 ~~~~~~~~~~VLDl~~G~G~~~~~la~~--g~~~v~~vD~s~~~l~~a~~n~~~n~----~~~~v~~~~~d~~~~~  280 (396)
T 2as0_A          211 LEKWVQPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNG----VEDRMKFIVGSAFEEM  280 (396)
T ss_dssp             HGGGCCTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTT----CGGGEEEEESCHHHHH
T ss_pred             HHHHhhCCCeEEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcC----CCccceEEECCHHHHH
Confidence            3333347889999999999999999986  24589999999999999999999887    3338999999987643

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.33  E-value=2.8e-12  Score=77.13  Aligned_cols=59  Identities=19%  Similarity=0.321  Sum_probs=50.2

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|.++..+++.  +..+++++|+++.+++.++++    .     ..+++++++|+.+
T Consensus        29 ~~~~~~VLDiG~G~G~lt~~L~~~--~~~~v~avEid~~~~~~~~~~----~-----~~~v~~i~~D~~~   87 (249)
T 3ftd_A           29 IEEGNTVVEVGGGTGNLTKVLLQH--PLKKLYVIELDREMVENLKSI----G-----DERLEVINEDASK   87 (249)
T ss_dssp             CCTTCEEEEEESCHHHHHHHHTTS--CCSEEEEECCCHHHHHHHTTS----C-----CTTEEEECSCTTT
T ss_pred             CCCcCEEEEEcCchHHHHHHHHHc--CCCeEEEEECCHHHHHHHHhc----c-----CCCeEEEEcchhh
Confidence            456789999999999999999886  246899999999999999887    2     3478999999876

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.33  E-value=1.2e-11  Score=72.92  Aligned_cols=68  Identities=21%  Similarity=0.124  Sum_probs=54.1

Q ss_pred             HHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         7 ~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+.+.....++.+|||+|||+|.++..+++.   ..+++++|+++.+++.++++....+     . +++++.+|+.+
T Consensus        28 ~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~-----~-~~~~~~~d~~~   95 (246)
T 1y8c_A           28 IEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQG-----L-KPRLACQDISN   95 (246)
T ss_dssp             HHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTT-----C-CCEEECCCGGG
T ss_pred             HHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcC-----C-CeEEEeccccc
Confidence            3334332346789999999999999998887   3479999999999999999988765     2 67888888765

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.33  E-value=1.2e-11  Score=73.04  Aligned_cols=67  Identities=19%  Similarity=0.255  Sum_probs=55.2

Q ss_pred             HHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         6 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++..+...++++.+|||+|||+|.++..+++.   +.+++++|+++.+++.++++..        ..+++++.+|+.+
T Consensus        43 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~  109 (242)
T 3l8d_A           43 IIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERGE--------GPDLSFIKGDLSS  109 (242)
T ss_dssp             HHHHHHHHSCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTTC--------BTTEEEEECBTTB
T ss_pred             HHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhcc--------cCCceEEEcchhc
Confidence            45566666778899999999999999999987   4489999999999999998752        3468888888764

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.33  E-value=1e-11  Score=77.47  Aligned_cols=67  Identities=16%  Similarity=0.184  Sum_probs=58.0

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      ..++.+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++++...+    ...+++++.+|..+.+|
T Consensus       181 ~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~  247 (360)
T 1tw3_A          181 WTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEG----LSDRVDVVEGDFFEPLP  247 (360)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTT----CTTTEEEEECCTTSCCS
T ss_pred             CccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcC----CCCceEEEeCCCCCCCC
Confidence            3567899999999999999999986 6789999999 999999999998876    45689999999877554

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.33  E-value=8.8e-12  Score=80.43  Aligned_cols=65  Identities=22%  Similarity=0.237  Sum_probs=58.6

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|..+..++...++.++|+++|+++.+++.+++|+++++     ..++.++++|+.+
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g-----~~nv~v~~~Da~~  167 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWG-----VSNAIVTNHAPAE  167 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT-----CSSEEEECCCHHH
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEeCCHHH
Confidence            5678899999999999999999988666899999999999999999999988     5679999998765

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.33  E-value=1.7e-11  Score=76.97  Aligned_cols=66  Identities=23%  Similarity=0.152  Sum_probs=58.5

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      .+..+|||+|||+|.++..+++.. |+.+++++|+ +.+++.+++++...+    ...++++..+|..+.+|
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~----l~~~v~~~~~d~~~~~p  266 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRG----LADRCEILPGDFFETIP  266 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTT----CTTTEEEEECCTTTCCC
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcC----cCCceEEeccCCCCCCC
Confidence            466799999999999999999996 7789999999 999999999998876    56789999999986655

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.33  E-value=1.4e-11  Score=77.75  Aligned_cols=63  Identities=27%  Similarity=0.273  Sum_probs=54.9

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|.++..+++..  ..+|+++|+| .+++.++++++.++    ...+++++.+|+.+
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g--~~~V~gvD~s-~~~~~a~~~~~~~~----~~~~v~~~~~d~~~  123 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMADHARALVKANN----LDHIVEVIEGSVED  123 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTT--CSEEEEEESS-TTHHHHHHHHHHTT----CTTTEEEEESCGGG
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcC--CCEEEEEccH-HHHHHHHHHHHHcC----CCCeEEEEECchhh
Confidence            3577899999999999999999873  3489999999 89999999999887    55679999999876

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.33  E-value=8.2e-12  Score=79.11  Aligned_cols=65  Identities=17%  Similarity=0.017  Sum_probs=56.3

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCC-CcceEEeeCCccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLP-NIKFEPQTGEGDIQY   85 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~d~~~~~   85 (88)
                      .++.+|||+|||+|.+++.++...  ..+|+++|+++.+++.|++|++.++    . ..+++++.+|+.+.+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ng----l~~~~v~~~~~D~~~~~  284 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNK----LDLSKAEFVRDDVFKLL  284 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTT----CCGGGEEEEESCHHHHH
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcC----CCccceEEEECCHHHHH
Confidence            577899999999999999999863  4589999999999999999999987    3 338999999987643

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.33  E-value=2.4e-11  Score=70.59  Aligned_cols=67  Identities=25%  Similarity=0.209  Sum_probs=53.5

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .++..+. ...++.+|||+|||+|.++..+++.   +.+++++|+++.+++.+++    .+     ..+++++.+|+.+.
T Consensus        36 ~~~~~l~-~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~-----~~~~~~~~~d~~~~  102 (218)
T 3ou2_A           36 AALERLR-AGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HG-----LDNVEFRQQDLFDW  102 (218)
T ss_dssp             HHHHHHT-TTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GC-----CTTEEEEECCTTSC
T ss_pred             HHHHHHh-cCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cC-----CCCeEEEecccccC
Confidence            3444444 2556779999999999999999988   3489999999999999998    23     35788999988764

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.33  E-value=8.9e-12  Score=80.82  Aligned_cols=62  Identities=24%  Similarity=0.252  Sum_probs=54.3

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|.++..+++.  +..+|+++|+++ +++.|+++++.++    ...+++++.+|+.+
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~~g----l~~~v~~~~~d~~~  218 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNN----LTDRIVVIPGKVEE  218 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHHTT----CTTTEEEEESCTTT
T ss_pred             cCCCEEEEecCcccHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHHcC----CCCcEEEEECchhh
Confidence            46789999999999999988874  456999999999 9999999999887    45789999999876

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.33  E-value=1.8e-11  Score=77.07  Aligned_cols=65  Identities=6%  Similarity=-0.018  Sum_probs=56.6

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      .++.+|||+| |+|.++..++... +..+|+++|+++.+++.|+++++.++     ..+++++.+|+.+.+|
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~-~~~~v~~vDi~~~~l~~a~~~~~~~g-----~~~v~~~~~D~~~~l~  235 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSG-LPKRIAVLDIDERLTKFIEKAANEIG-----YEDIEIFTFDLRKPLP  235 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHT-CCSEEEEECSCHHHHHHHHHHHHHHT-----CCCEEEECCCTTSCCC
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC-----CCCEEEEEChhhhhch
Confidence            3578999999 9999999998874 55799999999999999999999887     3489999999988554

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.33  E-value=1.6e-11  Score=79.58  Aligned_cols=63  Identities=17%  Similarity=0.265  Sum_probs=57.2

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++++++     ..++.++++|+.+
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g-----~~nv~~~~~D~~~  179 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCG-----ISNVALTHFDGRV  179 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHT-----CCSEEEECCCSTT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEeCCHHH
Confidence            78899999999999999999987666899999999999999999999887     5679999999865

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.32  E-value=9.4e-12  Score=80.44  Aligned_cols=64  Identities=22%  Similarity=0.240  Sum_probs=57.3

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++++++     .. +.++++|+.+
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G-----~~-v~~~~~Da~~  162 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWG-----AP-LAVTQAPPRA  162 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHC-----CC-CEEECSCHHH
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-----Ce-EEEEECCHHH
Confidence            5678899999999999999999998666899999999999999999999988     44 8899998765

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.32  E-value=1.1e-11  Score=75.64  Aligned_cols=62  Identities=29%  Similarity=0.334  Sum_probs=52.2

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCC--cceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPN--IKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.++++....+    ..  .+++++++|+.+
T Consensus        81 ~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~~~v~~~~~d~~~  144 (299)
T 3g2m_A           81 PVSGPVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAP----ADVRDRCTLVQGDMSA  144 (299)
T ss_dssp             CCCSCEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSC----HHHHTTEEEEECBTTB
T ss_pred             CCCCcEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcc----cccccceEEEeCchhc
Confidence            34559999999999999999887   3479999999999999999988754    11  579999999876

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.32  E-value=1.4e-11  Score=76.97  Aligned_cols=62  Identities=24%  Similarity=0.252  Sum_probs=53.6

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|.++..+++.  +..+|+++|+++ +++.++++++.++    ...+++++.+|+.+
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~----l~~~v~~~~~d~~~  110 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNN----LTDRIVVIPGKVEE  110 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTT----CTTTEEEEESCTTT
T ss_pred             CCcCEEEEcCCCccHHHHHHHhC--CCCEEEEECCHH-HHHHHHHHHHHcC----CCCcEEEEEcchhh
Confidence            47789999999999999998886  346899999997 8899999998877    45789999999875

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.32  E-value=6.7e-12  Score=74.41  Aligned_cols=61  Identities=16%  Similarity=0.065  Sum_probs=51.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++.+|||+|||+|.++..+++..  ..+++++|+++.+++.++++....+     ..+++++.+|+.+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~  139 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEG-----KRVRNYFCCGLQD  139 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGG-----GGEEEEEECCGGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcC-----CceEEEEEcChhh
Confidence            47899999999999999988875  4589999999999999999987754     4568888888654

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.32  E-value=1.6e-11  Score=76.73  Aligned_cols=65  Identities=17%  Similarity=0.238  Sum_probs=56.8

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ..++.+|||+|||+|.++..+++.. |+.+++++|+ +.+++.+++++...+    ...+++++.+|..+.
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~  252 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKG----VADRMRGIAVDIYKE  252 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTT----CTTTEEEEECCTTTS
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcC----CCCCEEEEeCccccC
Confidence            3567899999999999999999986 6789999999 999999999998876    445799999998763

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.31  E-value=7.5e-12  Score=79.01  Aligned_cols=62  Identities=21%  Similarity=0.063  Sum_probs=55.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ++.+|||+|||+|.+++.++..   ..+|+++|+++.+++.|+++++.++     ..+++++.+|+.+.+
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~-----~~~~~~~~~d~~~~~  270 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNG-----LGNVRVLEANAFDLL  270 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTT-----CTTEEEEESCHHHHH
T ss_pred             CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcC-----CCCceEEECCHHHHH
Confidence            6789999999999999999987   3479999999999999999999987     455999999987643

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.31  E-value=8.3e-12  Score=77.83  Aligned_cols=66  Identities=20%  Similarity=0.180  Sum_probs=54.1

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc--CCCCCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG--NPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +++.+|||+|||+|.++..+++.. +..+++++|+++.+++.|++++...  +   ....+++++.+|+.+.
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~g---l~~~rv~~~~~D~~~~  186 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIG---YEDPRVNLVIGDGVAF  186 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGG---GGSTTEEEEESCHHHH
T ss_pred             CCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccc---cCCCcEEEEECCHHHH
Confidence            466799999999999999999874 5679999999999999999998753  2   0135789999997653

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.31  E-value=1.4e-11  Score=71.12  Aligned_cols=61  Identities=25%  Similarity=0.205  Sum_probs=51.6

Q ss_pred             cCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..+++ +|||+|||+|..+..+++.   +.+++++|+++.+++.++++....+     . ++++..+|+.+
T Consensus        27 ~~~~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~-----~-~~~~~~~d~~~   87 (202)
T 2kw5_A           27 QIPQG-KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKG-----V-KITTVQSNLAD   87 (202)
T ss_dssp             HSCSS-EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHT-----C-CEEEECCBTTT
T ss_pred             hCCCC-CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcC-----C-ceEEEEcChhh
Confidence            45667 9999999999999988876   3489999999999999999988765     2 68888888764

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.31  E-value=2.4e-11  Score=70.28  Aligned_cols=57  Identities=23%  Similarity=0.284  Sum_probs=46.7

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|.++..+++.  +..+++++|+++.+++.++++..          +++++.+|+.+
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~----------~~~~~~~d~~~  106 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG----------GVNFMVADVSE  106 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT----------TSEEEECCGGG
T ss_pred             CCCCEEEEEeCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhcC----------CCEEEECcHHH
Confidence            46779999999999999999886  34579999999999999999865          35666666654

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.30  E-value=4.7e-12  Score=76.41  Aligned_cols=65  Identities=17%  Similarity=0.179  Sum_probs=51.7

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+++++....+.+.+|||+|||+|..+..+++..   .+|+|+|+|+.|++.|++           ..+++++++|+++
T Consensus        28 ~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~~ml~~a~~-----------~~~v~~~~~~~e~   92 (257)
T 4hg2_A           28 ALFRWLGEVAPARGDALDCGCGSGQASLGLAEFF---ERVHAVDPGEAQIRQALR-----------HPRVTYAVAPAED   92 (257)
T ss_dssp             HHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTC---SEEEEEESCHHHHHTCCC-----------CTTEEEEECCTTC
T ss_pred             HHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcHHhhhhhhh-----------cCCceeehhhhhh
Confidence            4666777667777899999999999999998864   479999999999987643           2357788887654

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.30  E-value=1.3e-11  Score=70.17  Aligned_cols=62  Identities=16%  Similarity=0.104  Sum_probs=47.0

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .+++.+.....++.+|||+|||+|.++..+++..    +++++|+|+.+++.        .      .+++++++|+.+.
T Consensus        12 ~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~--------~------~~~~~~~~d~~~~   73 (170)
T 3q87_B           12 TLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES--------H------RGGNLVRADLLCS   73 (170)
T ss_dssp             HHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT--------C------SSSCEEECSTTTT
T ss_pred             HHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc--------c------cCCeEEECChhhh
Confidence            4455544323567799999999999999998864    79999999999987        1      2466777777653

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.30  E-value=1.9e-11  Score=75.83  Aligned_cols=62  Identities=19%  Similarity=0.252  Sum_probs=53.2

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|.++..+++.  +..+|+++|++ .+++.|+++++.++    ...+++++.+|+.+
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~--g~~~v~~vD~s-~~~~~a~~~~~~~~----~~~~i~~~~~d~~~   98 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMS-SIIEMAKELVELNG----FSDKITLLRGKLED   98 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESS-THHHHHHHHHHHTT----CTTTEEEEESCTTT
T ss_pred             cCCCEEEEecCccHHHHHHHHHC--CCCEEEEEChH-HHHHHHHHHHHHcC----CCCCEEEEECchhh
Confidence            46789999999999999998886  24589999999 59999999998877    55679999999875

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.30  E-value=1.9e-11  Score=76.58  Aligned_cols=64  Identities=19%  Similarity=0.205  Sum_probs=56.7

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ....+|||+|||+|..+..+++.. |+.+++++|+ +.+++.+++++...+    ...+++++.+|..+.
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~  241 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLS----GSERIHGHGANLLDR  241 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCT----TGGGEEEEECCCCSS
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcC----cccceEEEEcccccc
Confidence            356799999999999999999986 7789999999 999999999998766    457899999999874

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.30  E-value=1.4e-11  Score=82.87  Aligned_cols=66  Identities=14%  Similarity=0.062  Sum_probs=56.6

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCC-cceEEeeCCccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPN-IKFEPQTGEGDIQY   85 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~d~~~~~   85 (88)
                      ..++.+|||+|||+|.+++.++...  ..+|+++|+|+.+++.+++|+..++    .. .+++++++|+.+.+
T Consensus       537 ~~~g~~VLDlg~GtG~~sl~aa~~g--a~~V~aVD~s~~al~~a~~N~~~ng----l~~~~v~~i~~D~~~~l  603 (703)
T 3v97_A          537 MSKGKDFLNLFSYTGSATVHAGLGG--ARSTTTVDMSRTYLEWAERNLRLNG----LTGRAHRLIQADCLAWL  603 (703)
T ss_dssp             HCTTCEEEEESCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTT----CCSTTEEEEESCHHHHH
T ss_pred             hcCCCcEEEeeechhHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcC----CCccceEEEecCHHHHH
Confidence            3478899999999999999988853  3479999999999999999999988    33 48999999988743

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.29  E-value=1.4e-11  Score=73.75  Aligned_cols=66  Identities=21%  Similarity=0.293  Sum_probs=51.3

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+.+.+....+++.+|||+|||+|.++..+++..   .+++++|+|+.+++.++++..          +++++.+|+.+
T Consensus        39 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~----------~~~~~~~d~~~  104 (263)
T 3pfg_A           39 DLAALVRRHSPKAASLLDVACGTGMHLRHLADSF---GTVEGLELSADMLAIARRRNP----------DAVLHHGDMRD  104 (263)
T ss_dssp             HHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTS---SEEEEEESCHHHHHHHHHHCT----------TSEEEECCTTT
T ss_pred             HHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCC----------CCEEEECChHH
Confidence            3445555556677899999999999999998873   479999999999999998743          35566666544

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.29  E-value=2.3e-11  Score=70.47  Aligned_cols=71  Identities=17%  Similarity=0.135  Sum_probs=52.8

Q ss_pred             HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+++..+. ...++.+|||+|||+|..+..++..  ++.+++++|+|+.+++.++++....+      .+++++.+|+.+
T Consensus        12 ~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~   82 (209)
T 2p8j_A           12 YRFLKYCN-ESNLDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSRENN------FKLNISKGDIRK   82 (209)
T ss_dssp             HHHHHHHH-HSSSCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHHHHT------CCCCEEECCTTS
T ss_pred             HHHHHHHh-ccCCCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcC------CceEEEECchhh
Confidence            34444444 3567789999999999986555544  35689999999999999999987644      356777777654

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.29  E-value=1.9e-11  Score=75.61  Aligned_cols=65  Identities=17%  Similarity=0.098  Sum_probs=57.5

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      +..+|+|+|||+|..+..+++.+ |+.+++++|+ +.+++.+++++...+    ...++++..+|..+.+|
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~p  233 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTG----LSGRAQVVVGSFFDPLP  233 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTT----CTTTEEEEECCTTSCCC
T ss_pred             CCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcC----cCcCeEEecCCCCCCCC
Confidence            45799999999999999999987 6789999999 999999999998876    45789999999986665

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.29  E-value=9.5e-12  Score=72.53  Aligned_cols=60  Identities=13%  Similarity=0.125  Sum_probs=50.9

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .++.+|||+|||+|.++..+++..   .+++++|+++.+++.++++....       .+++++.+|+.+.
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~d~~~~  109 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRW-------SHISWAATDILQF  109 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTC-------SSEEEEECCTTTC
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccC-------CCeEEEEcchhhC
Confidence            456799999999999999998874   48999999999999999988763       3788888887653

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.29  E-value=1.6e-11  Score=83.78  Aligned_cols=69  Identities=19%  Similarity=0.144  Sum_probs=54.9

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC-CCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN-PELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|++++.... .......+++++++|+.+
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~d  789 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILE  789 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTS
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHh
Confidence            477899999999999999999886455799999999999999999765421 001124589999999875

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.29  E-value=9.5e-12  Score=75.31  Aligned_cols=48  Identities=17%  Similarity=0.247  Sum_probs=42.4

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG   64 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~   64 (88)
                      ..++.+|||+|||+|.++..+++.   ..+|+++|+|+.|++.++++....
T Consensus        43 l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~   90 (261)
T 3iv6_A           43 IVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADR   90 (261)
T ss_dssp             CCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSS
T ss_pred             CCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhc
Confidence            467789999999999999999986   348999999999999999987653

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.28  E-value=1.3e-11  Score=76.50  Aligned_cols=68  Identities=13%  Similarity=0.133  Sum_probs=54.2

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +++.+|||+|||+|.++..+++.. +..+++++|+++.+++.|++++.... ......+++++.+|+.+.
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~-~~~~~~~v~~~~~D~~~~  182 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNIS-CGYEDKRVNVFIEDASKF  182 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTS-GGGGSTTEEEEESCHHHH
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhc-cccCCCcEEEEEccHHHH
Confidence            456799999999999999999864 56799999999999999999987521 000135799999997653

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.28  E-value=2.2e-11  Score=74.19  Aligned_cols=67  Identities=24%  Similarity=0.175  Sum_probs=53.3

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCC-------CCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELL-------PNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~d~~~~   84 (88)
                      .+++.+|||+|||+|..+..+++.  +..+++++|+++.+++.|++++ .... ..       ...+++++.+|+.+.
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~-~~~~-~l~~~~~~~~~~~v~~~~~D~~~~  146 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLI-KIDN-GLLEAMLNGKHEKAKLTIGDGFEF  146 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHT-CTTT-THHHHHHTTCCSSEEEEESCHHHH
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHH-hhcc-ccccccccCCCCcEEEEECchHHH
Confidence            356689999999999999999887  4679999999999999999998 4310 00       146799999997653

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.28  E-value=2.4e-11  Score=70.92  Aligned_cols=65  Identities=23%  Similarity=0.197  Sum_probs=50.9

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+++.+.  ..++.+|||+|||+|.++..+++.   +.+++++|+++.+++.++++..         .+++++.+|+.+
T Consensus        36 ~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~d~~~  100 (220)
T 3hnr_A           36 DILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP---------KEFSITEGDFLS  100 (220)
T ss_dssp             HHHHHHH--HTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC---------TTCCEESCCSSS
T ss_pred             HHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC---------CceEEEeCChhh
Confidence            4455554  347789999999999999999886   4589999999999999998765         245666666654

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.28  E-value=1.8e-11  Score=75.59  Aligned_cols=69  Identities=10%  Similarity=0.102  Sum_probs=54.3

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++...+.......+++++.+|+.+.
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~  144 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY  144 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH
Confidence            466799999999999999999874 567999999999999999999864210000135799999998764

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.28  E-value=1.5e-11  Score=75.69  Aligned_cols=48  Identities=17%  Similarity=0.040  Sum_probs=39.9

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      ++.+|||+|||+|..+..++..  ...+|+|+|+|+.+++.|+++....+
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~   95 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLN   95 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhcc
Confidence            4689999999999877766654  24589999999999999999887644

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.28  E-value=5e-11  Score=76.68  Aligned_cols=66  Identities=18%  Similarity=0.259  Sum_probs=58.0

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ..++.+|||+|||+|..+..++...+..++++++|+++.+++.+++++++++     ..+++++.+|+.+.
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g-----~~~v~~~~~D~~~~  322 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG-----IKIVKPLVKDARKA  322 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTT-----CCSEEEECSCTTCC
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-----CCcEEEEEcChhhc
Confidence            5678899999999999999999987444899999999999999999999887     56789999988653

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.27  E-value=3.6e-11  Score=74.17  Aligned_cols=63  Identities=22%  Similarity=0.264  Sum_probs=55.8

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|..+..+++.. +..+++++|++ .+++.+++++...+    ...+++++.+|..+
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~----~~~~v~~~~~d~~~  226 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQG----VASRYHTIAGSAFE  226 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHT----CGGGEEEEESCTTT
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcC----CCcceEEEeccccc
Confidence            567899999999999999999987 67899999999 99999999998776    44579999999876

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.27  E-value=2.8e-11  Score=73.55  Aligned_cols=69  Identities=17%  Similarity=0.228  Sum_probs=54.7

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      +++.+|||+|||+|.++..+++.. +..+++++|+++.+++.|++++...... ....+++++.+|+.+.+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~-~~~~rv~v~~~D~~~~l  142 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGK-LDDPRVDVQVDDGFMHI  142 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTT-TTSTTEEEEESCSHHHH
T ss_pred             CCCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccc-cCCCceEEEECcHHHHH
Confidence            456799999999999999998864 4579999999999999999998642100 12468999999987643

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.27  E-value=2.8e-12  Score=77.46  Aligned_cols=63  Identities=22%  Similarity=0.226  Sum_probs=53.3

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH-------HHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP-------EVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .++.+|||+|||+|.+++.++..   ..+|+++|+++       .+++.++++...++    ...+++++++|+.+.
T Consensus        82 ~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~----~~~ri~~~~~d~~~~  151 (258)
T 2r6z_A           82 TAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQD----TAARINLHFGNAAEQ  151 (258)
T ss_dssp             GGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHH----HHTTEEEEESCHHHH
T ss_pred             CCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhC----CccCeEEEECCHHHH
Confidence            45679999999999999999986   35799999999       99999999987766    234599999998764

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.27  E-value=1.9e-11  Score=75.59  Aligned_cols=68  Identities=21%  Similarity=0.153  Sum_probs=54.7

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++...... ....+++++.+|+.+.
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~-~~~~rv~~~~~D~~~~  174 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCG-FSHPKLDLFCGDGFEF  174 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGG-GGCTTEEEECSCHHHH
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccc-cCCCCEEEEEChHHHH
Confidence            456799999999999999999874 5679999999999999999998653100 0146789999998764

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.27  E-value=1.1e-11  Score=75.03  Aligned_cols=71  Identities=14%  Similarity=0.095  Sum_probs=57.3

Q ss_pred             HHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023           8 ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus         8 ~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ..+...+.+..+|||+|||+|-++..++... +..+|+++|+++.+++.+++++..++     . +.++...|.....
T Consensus       124 ~~i~~~i~~p~~VLDLGCG~GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~~g-----~-~~~~~v~D~~~~~  194 (281)
T 3lcv_B          124 RELFRHLPRPNTLRDLACGLNPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTRLN-----V-PHRTNVADLLEDR  194 (281)
T ss_dssp             HHHGGGSCCCSEEEETTCTTGGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHHTT-----C-CEEEEECCTTTSC
T ss_pred             HHHHhccCCCceeeeeccCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhcC-----C-CceEEEeeecccC
Confidence            3334445667799999999999999998875 78899999999999999999999877     2 2677777766533

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.26  E-value=3.1e-11  Score=76.65  Aligned_cols=67  Identities=22%  Similarity=0.170  Sum_probs=53.5

Q ss_pred             HHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023           9 LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus         9 ~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ++.....++.+|||+|||+|.+++.++..   +.+|+++|+|+.+++.+++|++.++    ..  .++.++|+.+.
T Consensus       207 ~l~~~~~~g~~VLDlg~GtG~~sl~~a~~---ga~V~avDis~~al~~a~~n~~~ng----~~--~~~~~~D~~~~  273 (393)
T 4dmg_A          207 LFEAMVRPGERVLDVYSYVGGFALRAARK---GAYALAVDKDLEALGVLDQAALRLG----LR--VDIRHGEALPT  273 (393)
T ss_dssp             HHHTTCCTTCEEEEESCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHT----CC--CEEEESCHHHH
T ss_pred             HHHHHhcCCCeEEEcccchhHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHhC----CC--CcEEEccHHHH
Confidence            34444456899999999999999999986   2359999999999999999999887    32  24558887654

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.26  E-value=3.7e-11  Score=70.89  Aligned_cols=67  Identities=13%  Similarity=0.165  Sum_probs=51.8

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .+++.+.. ..++.+|||+|||+|.++..+++.. +  +++++|+|+.+++.++++...         +++++.+|+.+.
T Consensus        32 ~~~~~l~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~--~v~gvD~s~~~~~~a~~~~~~---------~v~~~~~d~~~~   98 (250)
T 2p7i_A           32 FMVRAFTP-FFRPGNLLELGSFKGDFTSRLQEHF-N--DITCVEASEEAISHAQGRLKD---------GITYIHSRFEDA   98 (250)
T ss_dssp             HHHHHHGG-GCCSSCEEEESCTTSHHHHHHTTTC-S--CEEEEESCHHHHHHHHHHSCS---------CEEEEESCGGGC
T ss_pred             HHHHHHHh-hcCCCcEEEECCCCCHHHHHHHHhC-C--cEEEEeCCHHHHHHHHHhhhC---------CeEEEEccHHHc
Confidence            34455543 3466789999999999999998864 3  799999999999999987542         477777777653

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.26  E-value=4.4e-11  Score=71.07  Aligned_cols=60  Identities=13%  Similarity=0.113  Sum_probs=50.9

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|.++..++...  ..+++++|+++.+++.++++....       .+++++.+|+.+
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~d~~~  151 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM-------PVGKFILASMET  151 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS-------SEEEEEESCGGG
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC-------CceEEEEccHHH
Confidence            467899999999999999999885  457999999999999999987652       468888888765

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.26  E-value=8.4e-11  Score=71.41  Aligned_cols=60  Identities=18%  Similarity=0.159  Sum_probs=49.7

Q ss_pred             CCCeEEEecCCC---ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGS---GYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~---G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ...+|||+|||+   |.++..+.+.. ++.+|+++|+|+.+++.+++++..       ..+++++.+|+.+
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~-p~~~v~~vD~sp~~l~~Ar~~~~~-------~~~v~~~~~D~~~  139 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVN-PDARVVYVDIDPMVLTHGRALLAK-------DPNTAVFTADVRD  139 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHC-TTCEEEEEESSHHHHHHHHHHHTT-------CTTEEEEECCTTC
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhC-CCCEEEEEECChHHHHHHHHhcCC-------CCCeEEEEeeCCC
Confidence            346999999999   98876666554 678999999999999999998853       3579999999865

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.26  E-value=3.4e-11  Score=73.85  Aligned_cols=66  Identities=20%  Similarity=0.110  Sum_probs=53.8

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc--CCCCCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG--NPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...  +   ....+++++.+|+.+.
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~---~~~~~v~~~~~D~~~~  156 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCG---FDDPRAEIVIANGAEY  156 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGG---GGCTTEEEEESCHHHH
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccc---cCCCceEEEECcHHHH
Confidence            456799999999999999999874 5679999999999999999998541  1   0145799999997654

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.26  E-value=2.7e-11  Score=72.18  Aligned_cols=58  Identities=14%  Similarity=0.126  Sum_probs=47.9

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++.          .+++++.+|+.+
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~----------~~~~~~~~d~~~   89 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADRL----------PNTNFGKADLAT   89 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHS----------TTSEEEECCTTT
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC----------CCcEEEECChhh
Confidence            467799999999999999999987 5678999999999999999872          235666666553

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.26  E-value=3.9e-12  Score=75.76  Aligned_cols=59  Identities=17%  Similarity=0.171  Sum_probs=49.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHH---hCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADL---VGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~---~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ++.+|||+|||+|..+..+++.   ..+.++|+++|+++.+++.|+.          ...+++++++|+.+.
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----------~~~~v~~~~gD~~~~  142 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----------DMENITLHQGDCSDL  142 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----------GCTTEEEEECCSSCS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----------cCCceEEEECcchhH
Confidence            4579999999999999999987   3467899999999999887761          135789999998764

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.25  E-value=2.7e-11  Score=74.59  Aligned_cols=66  Identities=23%  Similarity=0.199  Sum_probs=54.1

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc--CCCCCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG--NPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++...  +   ....+++++.+|+.+.
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~---~~~~rv~v~~~Da~~~  161 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIG---YSSSKLTLHVGDGFEF  161 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGG---GGCTTEEEEESCHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcc---cCCCcEEEEECcHHHH
Confidence            456799999999999999999874 5679999999999999999998652  2   0146789999998653

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.25  E-value=8.3e-11  Score=70.53  Aligned_cols=60  Identities=13%  Similarity=0.046  Sum_probs=50.7

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .++.+|||+|||+|.++..+.    +..+++++|+++.+++.++++...++      .+..+...|....
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g------~~~~~~v~D~~~~  163 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKD------WDFTFALQDVLCA  163 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTT------CEEEEEECCTTTS
T ss_pred             CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcC------CCceEEEeecccC
Confidence            567799999999999999887    46789999999999999999988765      4567777776653

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.25  E-value=1e-10  Score=68.86  Aligned_cols=53  Identities=17%  Similarity=0.372  Sum_probs=44.4

Q ss_pred             HHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023           6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus         6 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      +.+.+.....++.+|||+|||+|..+..+++.. +  +++++|+++.+++.++++.
T Consensus        30 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~--~v~~~D~s~~~~~~a~~~~   82 (239)
T 3bxo_A           30 IADLVRSRTPEASSLLDVACGTGTHLEHFTKEF-G--DTAGLELSEDMLTHARKRL   82 (239)
T ss_dssp             HHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHH-S--EEEEEESCHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCCCeEEEecccCCHHHHHHHHhC-C--cEEEEeCCHHHHHHHHHhC
Confidence            344555445677899999999999999999986 3  7999999999999999874

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.24  E-value=6.2e-11  Score=75.27  Aligned_cols=67  Identities=10%  Similarity=0.004  Sum_probs=56.0

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCC-------------------------------------CceEEEEeCCHHHHHH
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGS-------------------------------------NGEVTAVELIPEVLQF   56 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~-------------------------------------~~~v~~~D~~~~~~~~   56 (88)
                      ..++..++|.+||+|.+++..+.....                                     ..+++|+|+++.+++.
T Consensus       199 ~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~  278 (393)
T 3k0b_A          199 WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEI  278 (393)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHH
Confidence            456789999999999999998876421                                     1569999999999999


Q ss_pred             HHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          57 THYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        57 a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      |++|+..++    ...++++.++|+.+.
T Consensus       279 Ar~Na~~~g----l~~~I~~~~~D~~~~  302 (393)
T 3k0b_A          279 AKQNAVEAG----LGDLITFRQLQVADF  302 (393)
T ss_dssp             HHHHHHHTT----CTTCSEEEECCGGGC
T ss_pred             HHHHHHHcC----CCCceEEEECChHhC
Confidence            999999888    455799999998763

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.24  E-value=6.3e-11  Score=72.90  Aligned_cols=68  Identities=19%  Similarity=0.187  Sum_probs=53.4

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...... ....+++++.+|+.+.
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~-~~~~~v~~~~~D~~~~  161 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRS-LADPRATVRVGDGLAF  161 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESCHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcc-cCCCcEEEEECcHHHH
Confidence            566899999999999999999864 5679999999999999999988431100 0246789999987653

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.24  E-value=4.4e-11  Score=75.77  Aligned_cols=67  Identities=18%  Similarity=0.129  Sum_probs=56.3

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhC-------------------------------------CCceEEEEeCCHHHHHH
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVG-------------------------------------SNGEVTAVELIPEVLQF   56 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~-------------------------------------~~~~v~~~D~~~~~~~~   56 (88)
                      ..++..+||.+||+|.+++..+....                                     +..+|+|+|+++.+++.
T Consensus       193 ~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~  272 (385)
T 3ldu_A          193 WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDI  272 (385)
T ss_dssp             CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHH
Confidence            35678999999999999999887641                                     12579999999999999


Q ss_pred             HHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          57 THYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        57 a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      |++|+..++    ...++++.++|+.+.
T Consensus       273 Ar~Na~~~g----l~~~i~~~~~D~~~l  296 (385)
T 3ldu_A          273 ARENAEIAG----VDEYIEFNVGDATQF  296 (385)
T ss_dssp             HHHHHHHHT----CGGGEEEEECCGGGC
T ss_pred             HHHHHHHcC----CCCceEEEECChhhc
Confidence            999999887    456899999998763

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.24  E-value=1.9e-11  Score=73.40  Aligned_cols=55  Identities=27%  Similarity=0.227  Sum_probs=45.0

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|.++..+++   ++.+++|+|+|+.+++.++++.           +++++.+|+.+
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~d~~~   87 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP-----------QVEWFTGYAEN   87 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT-----------TEEEECCCTTS
T ss_pred             CCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc-----------CCEEEECchhh
Confidence            5778999999999999999987   4568999999999888765542           57777777654

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.24  E-value=2.4e-11  Score=75.66  Aligned_cols=61  Identities=20%  Similarity=0.239  Sum_probs=51.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++.+|||+|||+|.++..+++.. +..+++++|+|+.+++.+++++..++    .  +.+++.+|..+
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~----~--~~~~~~~d~~~  256 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASRATLAANG----V--EGEVFASNVFS  256 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHHHHHHHTT----C--CCEEEECSTTT
T ss_pred             CCCeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhC----C--CCEEEEccccc
Confidence            45699999999999999999985 66799999999999999999998766    1  24567777654

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.24  E-value=9.7e-11  Score=74.22  Aligned_cols=67  Identities=10%  Similarity=0.022  Sum_probs=56.3

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCC-------------------------------------CceEEEEeCCHHHHHH
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGS-------------------------------------NGEVTAVELIPEVLQF   56 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~-------------------------------------~~~v~~~D~~~~~~~~   56 (88)
                      ..++..++|.+||+|.+++..+.....                                     ..+++|+|+++.+++.
T Consensus       192 ~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~  271 (384)
T 3ldg_A          192 WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI  271 (384)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHH
Confidence            456789999999999999998876421                                     1569999999999999


Q ss_pred             HHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          57 THYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        57 a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      |++|+..++    ...++++.++|+.+.
T Consensus       272 Ar~Na~~~g----l~~~I~~~~~D~~~l  295 (384)
T 3ldg_A          272 ARKNAREVG----LEDVVKLKQMRLQDF  295 (384)
T ss_dssp             HHHHHHHTT----CTTTEEEEECCGGGC
T ss_pred             HHHHHHHcC----CCCceEEEECChHHC
Confidence            999999988    556799999998763

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.23  E-value=4.4e-11  Score=72.29  Aligned_cols=45  Identities=31%  Similarity=0.491  Sum_probs=39.9

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      ..++.+|||+|||+|.++..+++   +..+++++|+|+.+++.++++.
T Consensus        55 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~   99 (279)
T 3ccf_A           55 PQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY   99 (279)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC
Confidence            45678999999999999999988   3568999999999999998875

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.23  E-value=3.7e-11  Score=75.98  Aligned_cols=63  Identities=16%  Similarity=0.097  Sum_probs=55.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc---------------CCCCCCCcceEEeeCC
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG---------------NPELLPNIKFEPQTGE   80 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~---------------~~~~~~~~~~~~~~~d   80 (88)
                      ++.+|||+|||+|..++.++... +..+|+++|+++.+++.+++|++.+               +     ..+++++++|
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~-~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~g-----l~~i~v~~~D  120 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKG-----EKTIVINHDD  120 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEES-----SSEEEEEESC
T ss_pred             CCCEEEECCCchhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccC-----CCceEEEcCc
Confidence            67899999999999999999986 4568999999999999999999988               5     3459999999


Q ss_pred             cccc
Q psy8023          81 GDIQ   84 (88)
Q Consensus        81 ~~~~   84 (88)
                      +.+.
T Consensus       121 a~~~  124 (378)
T 2dul_A          121 ANRL  124 (378)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8653

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.23  E-value=8.3e-11  Score=71.33  Aligned_cols=65  Identities=17%  Similarity=0.143  Sum_probs=48.4

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|.++..++..   +.+++++|+|+.+++.++++....... ....++.+..+|+.+
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~d~~~  120 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKE-PAFDKWVIEEANWLT  120 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTS-HHHHTCEEEECCGGG
T ss_pred             cCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccc-cccceeeEeecChhh
Confidence            46789999999999999999887   338999999999999999887443200 012355666666543

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.23  E-value=8e-11  Score=68.41  Aligned_cols=51  Identities=25%  Similarity=0.419  Sum_probs=43.4

Q ss_pred             HHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023           8 ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus         8 ~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      ..+...++++.+|||+|||+|.++..+++.   +.+++++|+++.+++.++++.
T Consensus        35 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~   85 (211)
T 3e23_A           35 TKFLGELPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL   85 (211)
T ss_dssp             HHHHTTSCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc
Confidence            344445677889999999999999999886   448999999999999999986

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.22  E-value=6.1e-11  Score=72.31  Aligned_cols=68  Identities=13%  Similarity=0.151  Sum_probs=54.4

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...+.. ....+++++.+|+.+.
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~-~~~~~v~~~~~D~~~~  144 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCG-YEDKRVNVFIEDASKF  144 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGG-GGSTTEEEEESCHHHH
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccc-cCCCcEEEEECChHHH
Confidence            466899999999999999998764 5679999999999999999998653210 0145789999988653

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.22  E-value=1.8e-10  Score=68.60  Aligned_cols=58  Identities=17%  Similarity=0.146  Sum_probs=48.9

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++.+|||+|||+|.++..+++..  ..+++++|+++.+++.++++..        ..+++++.+|+.+
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~  101 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHG--AKKVLGIDLSERMLTEAKRKTT--------SPVVCYEQKAIED  101 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHCC--------CTTEEEEECCGGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHhhc--------cCCeEEEEcchhh
Confidence            67899999999999999999874  2389999999999999999865        2367888888754

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.21  E-value=4.1e-11  Score=76.09  Aligned_cols=66  Identities=18%  Similarity=0.107  Sum_probs=56.2

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcc-eEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIK-FEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~d~~~~   84 (88)
                      .++.+|||++||+|.+++.++...+...+|+++|+++.+++.+++|++.++    ...+ ++++++|+.+.
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ng----l~~~~v~v~~~Da~~~  117 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNN----IPEDRYEIHGMEANFF  117 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTT----CCGGGEEEECSCHHHH
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCceEEEEeCCHHHH
Confidence            357899999999999999999975222589999999999999999999988    4445 99999998654

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.21  E-value=1.3e-10  Score=70.64  Aligned_cols=47  Identities=26%  Similarity=0.384  Sum_probs=40.9

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeC-CHHHHHHHHHhhhh
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL-IPEVLQFTHYNIQQ   63 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~-~~~~~~~a~~~~~~   63 (88)
                      .++.+|||+|||+|.+++.+++..  ..+|+++|+ ++.+++.++++...
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~--~~~v~~~D~s~~~~~~~a~~n~~~  125 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAG--ADQVVATDYPDPEILNSLESNIRE  125 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTT--CSEEEEEECSCHHHHHHHHHHHHT
T ss_pred             cCCCeEEEecccccHHHHHHHHcC--CCEEEEEeCCCHHHHHHHHHHHHH
Confidence            467899999999999999888752  348999999 89999999999944

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.21  E-value=6.8e-11  Score=73.53  Aligned_cols=62  Identities=15%  Similarity=0.033  Sum_probs=55.4

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +.+|||+|||+|.++..+++.+ |..+++++|+ +.+++.++++....+    ...+++++.+|..+.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~  241 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAHD----LGGRVEFFEKNLLDA  241 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTT----CGGGEEEEECCTTCG
T ss_pred             CCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhcC----CCCceEEEeCCcccC
Confidence            7799999999999999999987 6789999999 889999999998876    456899999998765

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.21  E-value=2.5e-11  Score=75.07  Aligned_cols=63  Identities=16%  Similarity=0.143  Sum_probs=54.8

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      .+|||+|||+|..+..+++.. |+.+++++|+ +.+++.+++++...+    ...+++++.+|..+.+|
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~  231 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLL----AGERVSLVGGDMLQEVP  231 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHH----HTTSEEEEESCTTTCCC
T ss_pred             CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcC----CCCcEEEecCCCCCCCC
Confidence            899999999999999999987 6789999999 999999999987655    34679999999877544

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.21  E-value=1.2e-10  Score=70.89  Aligned_cols=62  Identities=19%  Similarity=0.105  Sum_probs=51.2

Q ss_pred             CeEEEecCCC--ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          18 AKVLDIGSGS--GYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        18 ~~vlD~g~G~--G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .+|||+|||+  +..+..+++...|..+|+++|.|+.|++.+++++....     ..+++|+++|+.+.
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-----~~~~~~v~aD~~~~  143 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-----EGRTAYVEADMLDP  143 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-----SSEEEEEECCTTCH
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-----CCcEEEEEecccCh
Confidence            5899999997  55556666665578999999999999999999887544     46899999998763

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.20  E-value=1.6e-10  Score=69.39  Aligned_cols=55  Identities=25%  Similarity=0.431  Sum_probs=44.8

Q ss_pred             HHHHHhhcC-CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023           6 ALELLKDNL-KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus         6 ~~~~~~~~~-~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      +...+.... .++.+|||+|||+|.++..+++.. ++.+++++|+++.+++.++++.
T Consensus        74 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~  129 (269)
T 1p91_A           74 IVAQLRERLDDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY  129 (269)
T ss_dssp             HHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC
Confidence            334444333 567899999999999999999986 5679999999999999998864

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.19  E-value=1.6e-12  Score=77.68  Aligned_cols=60  Identities=25%  Similarity=0.347  Sum_probs=50.8

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|.++..+++..   .+++++|+++.+++.++++...       ..+++++++|+.+
T Consensus        27 ~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~~-------~~~v~~~~~D~~~   86 (245)
T 1yub_A           27 LKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKL-------NTRVTLIHQDILQ   86 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTT-------CSEEEECCSCCTT
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhcc-------CCceEEEECChhh
Confidence            4567799999999999999999873   5899999999999988887652       3578899998875

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.18  E-value=1.1e-10  Score=70.82  Aligned_cols=47  Identities=21%  Similarity=0.182  Sum_probs=37.0

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhh
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ   63 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~   63 (88)
                      .++.+|||+|||+|.....++..  +..+|+|+|+|+.+++.|+++++.
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~--~~~~v~gvD~s~~~l~~a~~~~~~  116 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQE  116 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTT
T ss_pred             CCCCeEEEECCCcChHHHHhhcc--CCCeEEEeCCCHHHHHHHHHHHhh
Confidence            36789999999999954443333  345899999999999999987654

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.18  E-value=2.1e-10  Score=67.64  Aligned_cols=59  Identities=15%  Similarity=0.206  Sum_probs=48.4

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|..+..+++..  ..+++++|+++.+++.++++...        .++++..+|+.+
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~  100 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHG--ASYVLGLDLSEKMLARARAAGPD--------TGITYERADLDK  100 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHTSCS--------SSEEEEECCGGG
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCC--CCeEEEEcCCHHHHHHHHHhccc--------CCceEEEcChhh
Confidence            367899999999999999998862  23899999999999999987643        257788887764

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.18  E-value=4.1e-11  Score=72.12  Aligned_cols=48  Identities=17%  Similarity=0.138  Sum_probs=38.7

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG   64 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~   64 (88)
                      .++.+|||+|||+|..+..++...  -.+|+|+|+|+.+++.|+++++..
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~--~~~v~g~D~s~~~l~~a~~~~~~~  101 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKE  101 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTC
T ss_pred             CCCceEEEeCCCccHHHHHHHHhh--hcceeeccccHHHHHHHHHHHhcC
Confidence            466799999999998776655442  237999999999999999987654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.16  E-value=3.1e-10  Score=64.66  Aligned_cols=48  Identities=23%  Similarity=0.454  Sum_probs=41.6

Q ss_pred             hcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023          12 DNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus        12 ~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      ..++++.+|||+|||+|.++..+++.   +.+++++|+++.+++.++++..
T Consensus        42 ~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~~   89 (195)
T 3cgg_A           42 AMAPRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDFP   89 (195)
T ss_dssp             HHSCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHCT
T ss_pred             HhccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhCC
Confidence            33567889999999999999999886   3489999999999999998753

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.15  E-value=2.9e-10  Score=65.61  Aligned_cols=54  Identities=20%  Similarity=0.327  Sum_probs=44.9

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.+|||+|||+|.++..++..   +.+++++|+++.+++.++++..          +++++.+|+.+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~----------~~~~~~~d~~~   95 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQTHP----------SVTFHHGTITD   95 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHHCT----------TSEEECCCGGG
T ss_pred             CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhCC----------CCeEEeCcccc
Confidence            789999999999999999887   3479999999999999998732          46677777654

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.13  E-value=3e-10  Score=70.72  Aligned_cols=63  Identities=11%  Similarity=0.146  Sum_probs=52.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCC----ceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSN----GEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~----~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ++.+|||+|||+|.++..+++.....    .+++|+|+++.+++.|+.++..++     . ++.+.++|....
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g-----~-~~~i~~~D~l~~  196 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-----Q-KMTLLHQDGLAN  196 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-----C-CCEEEESCTTSC
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC-----C-CceEEECCCCCc
Confidence            56799999999999999999887332    789999999999999999998766     2 577888887653

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.13  E-value=3.5e-10  Score=67.75  Aligned_cols=54  Identities=26%  Similarity=0.333  Sum_probs=44.5

Q ss_pred             HHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023           6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus         6 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      +.+.+....+++.+|||+|||+|.++..+++.   +.+++++|+|+.+++.++++..
T Consensus        44 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~   97 (260)
T 2avn_A           44 IGSFLEEYLKNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV   97 (260)
T ss_dssp             HHHHHHHHCCSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC
T ss_pred             HHHHHHHhcCCCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC
Confidence            34445555567889999999999999999886   3589999999999999998754

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.12  E-value=4.3e-10  Score=65.24  Aligned_cols=49  Identities=27%  Similarity=0.431  Sum_probs=39.5

Q ss_pred             HHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023           8 ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus         8 ~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      +.+.....++.+|||+|||+|..+..+     ...+++++|+++.+++.++++.
T Consensus        28 ~~l~~~~~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~   76 (211)
T 2gs9_A           28 RALKGLLPPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA   76 (211)
T ss_dssp             HHHHTTCCCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC
T ss_pred             HHHHHhcCCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC
Confidence            444444557889999999999988776     1228999999999999999875

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.12  E-value=2.5e-10  Score=67.56  Aligned_cols=44  Identities=25%  Similarity=0.388  Sum_probs=39.0

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      ++++.+|||+|||+|.++..+++.   +.+++++|+|+.+++.++++
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~   82 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK   82 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh
Confidence            457789999999999999998887   34799999999999999886

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.12  E-value=3.7e-10  Score=72.26  Aligned_cols=63  Identities=21%  Similarity=0.294  Sum_probs=54.8

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||+|..+..+++.. ++++++++|+++.+++.+++++.+++     . +++++.+|+.+
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~~~~~l~~~~~~~~~~g-----~-~~~~~~~D~~~  306 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLG-----M-KATVKQGDGRY  306 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTT-----C-CCEEEECCTTC
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHHcC-----C-CeEEEeCchhh
Confidence            4678899999999999999999986 45899999999999999999999877     2 46788888764

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.10  E-value=1.7e-10  Score=65.00  Aligned_cols=44  Identities=11%  Similarity=0.262  Sum_probs=39.9

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      ..++.+|||+|||+|.++..+++..   .+++++|+++.+++.++++
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~   58 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK   58 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh
Confidence            5677899999999999999999875   2899999999999999987

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.09  E-value=2.6e-10  Score=67.99  Aligned_cols=48  Identities=19%  Similarity=0.129  Sum_probs=40.8

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG   64 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~   64 (88)
                      .++.+|||+|||+|..+..++... . .+|+++|+|+.+++.++++....
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~-~-~~v~gvD~s~~~l~~a~~~~~~~  102 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACES-F-TEIIVSDYTDQNLWELQKWLKKE  102 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGT-E-EEEEEEESCHHHHHHHHHHHTTC
T ss_pred             cCCCEEEEECCCccHHHHHHhhcc-c-CeEEEecCCHHHHHHHHHHHhcC
Confidence            456799999999999998887763 2 58999999999999999988653

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=99.09  E-value=1.3e-09  Score=66.56  Aligned_cols=69  Identities=19%  Similarity=0.255  Sum_probs=57.6

Q ss_pred             CcHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCC
Q psy8023           1 MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGE   80 (88)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d   80 (88)
                      +|..++++.+.  +.++..++|.+||.|+.+..+++.   +++|+|+|.++.+++.+++ +..        .+++++++|
T Consensus         9 VLl~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~--------~rv~lv~~~   74 (285)
T 1wg8_A            9 VLYQEALDLLA--VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL--------PGLTVVQGN   74 (285)
T ss_dssp             TTHHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC--------TTEEEEESC
T ss_pred             HHHHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc--------CCEEEEECC
Confidence            46778888886  677889999999999999999997   5689999999999999998 533        367888877


Q ss_pred             ccc
Q psy8023          81 GDI   83 (88)
Q Consensus        81 ~~~   83 (88)
                      ..+
T Consensus        75 f~~   77 (285)
T 1wg8_A           75 FRH   77 (285)
T ss_dssp             GGG
T ss_pred             cch
Confidence            654

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.07  E-value=7.9e-10  Score=63.69  Aligned_cols=54  Identities=17%  Similarity=0.102  Sum_probs=43.0

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGS-NGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||+|.++..+++..++ ..+++|+|+++..           .     ..+++++.+|+.+
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~-----~~~v~~~~~d~~~   74 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------P-----IPNVYFIQGEIGK   74 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------C-----CTTCEEEECCTTT
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------C-----CCCceEEEccccc
Confidence            467789999999999999999998742 6899999999821           1     2457788888765

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.07  E-value=6.8e-10  Score=64.66  Aligned_cols=43  Identities=26%  Similarity=0.390  Sum_probs=38.5

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      .++.+|||+|||+|.++..+++.   +.+++++|+++.+++.++++
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~   93 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA   93 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh
Confidence            45689999999999999999887   44899999999999999987

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.06  E-value=1e-09  Score=73.99  Aligned_cols=66  Identities=20%  Similarity=0.123  Sum_probs=55.5

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHh-----------------------------------------CCCceEEEEeCCHH
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLV-----------------------------------------GSNGEVTAVELIPE   52 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~-----------------------------------------~~~~~v~~~D~~~~   52 (88)
                      ..++..++|.+||+|.+++..+...                                         .+..+++|+|+++.
T Consensus       188 ~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~  267 (703)
T 3v97_A          188 WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDAR  267 (703)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHH
T ss_pred             CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHH
Confidence            4567799999999999999887653                                         12357999999999


Q ss_pred             HHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          53 VLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        53 ~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++.|++|+..++    ....+++.++|+.+
T Consensus       268 av~~A~~N~~~ag----v~~~i~~~~~D~~~  294 (703)
T 3v97_A          268 VIQRARTNARLAG----IGELITFEVKDVAQ  294 (703)
T ss_dssp             HHHHHHHHHHHTT----CGGGEEEEECCGGG
T ss_pred             HHHHHHHHHHHcC----CCCceEEEECChhh
Confidence            9999999999988    55679999999876

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.05  E-value=3.8e-10  Score=70.33  Aligned_cols=65  Identities=12%  Similarity=0.105  Sum_probs=49.4

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      ..++.+|||+|||+|..+..+++.. ++.+++++|++ .++.  +++.+..+    ...+++++.+|..+.+|
T Consensus       182 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~--~~~~~~~~----~~~~v~~~~~d~~~~~p  246 (348)
T 3lst_A          182 FPATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDRA-EVVA--RHRLDAPD----VAGRWKVVEGDFLREVP  246 (348)
T ss_dssp             CCSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEECH-HHHT--TCCCCCGG----GTTSEEEEECCTTTCCC
T ss_pred             ccCCceEEEECCccCHHHHHHHHHC-CCCEEEEecCH-HHhh--cccccccC----CCCCeEEEecCCCCCCC
Confidence            3567799999999999999999987 67899999994 4444  33333333    35689999999875554

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.04  E-value=4.3e-10  Score=68.02  Aligned_cols=66  Identities=14%  Similarity=-0.008  Sum_probs=51.1

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +.+.+|||+|||+|..+..+++.  + .+++++|+++.+++.|++++..... .....+++++.+|+.+.
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~--~-~~v~~veid~~~i~~ar~~~~~~~~-~~~~~rv~~~~~D~~~~  136 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY--D-THIDFVQADEKILDSFISFFPHFHE-VKNNKNFTHAKQLLDLD  136 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS--S-CEEEEECSCHHHHGGGTTTSTTHHH-HHTCTTEEEESSGGGSC
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC--C-CEEEEEECCHHHHHHHHHHHHhhcc-ccCCCeEEEEechHHHH
Confidence            45679999999999999998887  3 7999999999999999988754100 00135788888887653

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.04  E-value=7.3e-10  Score=64.09  Aligned_cols=51  Identities=18%  Similarity=0.206  Sum_probs=40.6

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||+|.++..+++.   .++|+|+|+++.           ..     ..+++++.+|+++
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~-----------~~-----~~~v~~~~~D~~~   73 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEM-----------EE-----IAGVRFIRCDIFK   73 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCC-----------CC-----CTTCEEEECCTTS
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEecccc-----------cc-----CCCeEEEEccccC
Confidence            467889999999999999999887   568999999973           11     3457777777664

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.03  E-value=1.7e-10  Score=68.66  Aligned_cols=45  Identities=24%  Similarity=0.253  Sum_probs=38.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      ++.+|||+|||+|.++..+++..  ..+|+|+|+|+.+++.++++..
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~g--~~~V~gvDis~~ml~~a~~~~~   81 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQNG--AKLVYALDVGTNQLAWKIRSDE   81 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT--CSEEEEECSSCCCCCHHHHTCT
T ss_pred             CCCEEEEEccCCCHHHHHHHhcC--CCEEEEEcCCHHHHHHHHHhCc
Confidence            46799999999999999999872  3489999999999998877543

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.03  E-value=1.3e-09  Score=66.35  Aligned_cols=46  Identities=24%  Similarity=0.291  Sum_probs=37.5

Q ss_pred             CCCeEEEecCCCCh----HHHHHHHHhCC---CceEEEEeCCHHHHHHHHHhh
Q psy8023          16 PGAKVLDIGSGSGY----LTACFADLVGS---NGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus        16 ~~~~vlD~g~G~G~----~~~~l~~~~~~---~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      ++.+|||+|||+|.    +++.+++..+.   +.+|+|+|+|+.+++.|+++.
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~  157 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI  157 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcC
Confidence            34699999999998    55566666532   358999999999999999986

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.02  E-value=1.3e-09  Score=66.38  Aligned_cols=49  Identities=20%  Similarity=0.189  Sum_probs=37.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh---CCCceE--EEEeCCHHHHHHHHHhhhhc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV---GSNGEV--TAVELIPEVLQFTHYNIQQG   64 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~---~~~~~v--~~~D~~~~~~~~a~~~~~~~   64 (88)
                      ++.+|||+|||+|.++..++..+   .+..++  +++|.|+.|++.+++++...
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~  105 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKT  105 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTC
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhc
Confidence            45699999999998766544322   144544  99999999999999998653

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.99  E-value=2.1e-09  Score=67.23  Aligned_cols=63  Identities=19%  Similarity=0.233  Sum_probs=53.7

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .+..+|+|+|||+|..+..+++.+ |+.+++..|. |.+++.+++++...+     .++++++.+|..+.
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~~-----~~rv~~~~gD~~~~  240 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQE-----EEQIDFQEGDFFKD  240 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC-------CCSEEEEESCTTTS
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhcc-----cCceeeecCccccC
Confidence            455799999999999999999997 7889999998 779999999887544     68999999998764

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.99  E-value=3.1e-09  Score=66.30  Aligned_cols=72  Identities=18%  Similarity=0.308  Sum_probs=59.1

Q ss_pred             CcHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCC
Q psy8023           1 MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGE   80 (88)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d   80 (88)
                      +|..++++.+.  +.++..++|.++|.|+.+..+++..++.++|+|+|.++.+++.++ ++   .     ..++++++++
T Consensus        44 VLl~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL---~-----~~Rv~lv~~n  112 (347)
T 3tka_A           44 VLLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI---D-----DPRFSIIHGP  112 (347)
T ss_dssp             TTTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC---C-----CTTEEEEESC
T ss_pred             ccHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh---c-----CCcEEEEeCC
Confidence            45677777776  678889999999999999999999878899999999999999984 33   2     3578888877


Q ss_pred             ccc
Q psy8023          81 GDI   83 (88)
Q Consensus        81 ~~~   83 (88)
                      -.+
T Consensus       113 F~~  115 (347)
T 3tka_A          113 FSA  115 (347)
T ss_dssp             GGG
T ss_pred             HHH
Confidence            543

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.99  E-value=1.2e-09  Score=70.21  Aligned_cols=65  Identities=15%  Similarity=0.131  Sum_probs=51.4

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhC------------CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCC-cceEEeeCCc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVG------------SNGEVTAVELIPEVLQFTHYNIQQGNPELLPN-IKFEPQTGEG   81 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~------------~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~d~   81 (88)
                      .++.+|+|.|||+|.++..+++...            +..+++|+|+++.+++.|+.++..++    .. .++.+.++|.
T Consensus       170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g----~~~~~~~i~~gD~  245 (445)
T 2okc_A          170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG----IGTDRSPIVCEDS  245 (445)
T ss_dssp             CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT----CCSSCCSEEECCT
T ss_pred             CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhC----CCcCCCCEeeCCC
Confidence            4567999999999999999887641            23579999999999999999988766    21 1567778876


Q ss_pred             cc
Q psy8023          82 DI   83 (88)
Q Consensus        82 ~~   83 (88)
                      ..
T Consensus       246 l~  247 (445)
T 2okc_A          246 LE  247 (445)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.98  E-value=1.2e-09  Score=61.19  Aligned_cols=40  Identities=30%  Similarity=0.658  Sum_probs=35.2

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHH
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVL   54 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~   54 (88)
                      ..++.+|||+|||+|.++..+++..++..+++++|+++ ++
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~   59 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MD   59 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cc
Confidence            46778999999999999999999875668999999998 64

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.98  E-value=9.2e-10  Score=66.54  Aligned_cols=68  Identities=16%  Similarity=0.179  Sum_probs=50.7

Q ss_pred             CCC--CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCC-CC---CCcceEEeeCCccccc
Q psy8023          15 KPG--AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPE-LL---PNIKFEPQTGEGDIQY   85 (88)
Q Consensus        15 ~~~--~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~-~~---~~~~~~~~~~d~~~~~   85 (88)
                      .++  .+|||+|||+|..++.++..   +++|+++|+++.+.+.++++++..... ..   ...+++++++|+.+.+
T Consensus        85 ~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L  158 (258)
T 2oyr_A           85 KGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL  158 (258)
T ss_dssp             BTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHS
T ss_pred             cCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHH
Confidence            455  89999999999999999997   347999999999877777776432100 00   0157999999987643

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.94  E-value=1.3e-09  Score=68.42  Aligned_cols=59  Identities=17%  Similarity=0.164  Sum_probs=48.4

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      .+..+|||+|||+|..+..+++.+ |..+++++|+ +.+++.+++           ..+++++.+|..+.+|
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~p  260 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPA-----------FSGVEHLGGDMFDGVP  260 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTTCCC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhh-----------cCCCEEEecCCCCCCC
Confidence            456799999999999999999997 7789999999 877765542           2468999999887554

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.93  E-value=1.1e-09  Score=69.35  Aligned_cols=42  Identities=24%  Similarity=0.430  Sum_probs=36.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHH
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFT   57 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a   57 (88)
                      ++.+|||+|||+|.++..+++..++..+++|+|+++.+++.|
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a   80 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP   80 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC
T ss_pred             CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC
Confidence            466999999999999999999865567999999999888666

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.92  E-value=9.6e-09  Score=62.96  Aligned_cols=48  Identities=25%  Similarity=0.249  Sum_probs=42.1

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      .++..|||++||+|.+++.++..   +.+++|+|+++.+++.|++++....
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~~  281 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFAREV  281 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence            57889999999999999998775   3389999999999999999997643

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.91  E-value=2.3e-09  Score=66.86  Aligned_cols=60  Identities=12%  Similarity=0.158  Sum_probs=48.4

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      ..+..+|||+|||+|..+..+++.+ |+.+++++|+ +.+++.+++    .       .+++++.+|..+.+|
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~-------~~v~~~~~d~~~~~p  245 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSG----S-------NNLTYVGGDMFTSIP  245 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC----B-------TTEEEEECCTTTCCC
T ss_pred             cccCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhccc----C-------CCcEEEeccccCCCC
Confidence            3466799999999999999999987 6789999999 988876654    1       248899998866443

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.90  E-value=2.4e-09  Score=67.26  Aligned_cols=60  Identities=17%  Similarity=0.135  Sum_probs=48.8

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      ..+..+|||+|||+|..+..+++.+ |+.+++++|+ +.+++.+++           ..+++++.+|..+.+|
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~p  258 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQ-----------FPGVTHVGGDMFKEVP  258 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTTCCC
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhh-----------cCCeEEEeCCcCCCCC
Confidence            3456799999999999999999997 7789999999 777765542           2479999999887554

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.88  E-value=9.9e-09  Score=65.52  Aligned_cols=56  Identities=14%  Similarity=0.254  Sum_probs=44.5

Q ss_pred             CCCCCeEEEecCC------CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSG------SGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G------~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|||      +|..++.+++.+.++.+|+++|+|+.+.        . .     ..+++++++|+.+
T Consensus       214 ~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~-~-----~~rI~fv~GDa~d  275 (419)
T 3sso_A          214 RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V-D-----ELRIRTIQGDQND  275 (419)
T ss_dssp             TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G-C-----BTTEEEEECCTTC
T ss_pred             cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h-c-----CCCcEEEEecccc
Confidence            4567899999999      7888888887655788999999999862        1 2     3579999999865

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.87  E-value=1.2e-08  Score=59.65  Aligned_cols=63  Identities=19%  Similarity=0.143  Sum_probs=52.4

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCC--CcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLP--NIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~d~~~~   84 (88)
                      +.+.++|||+||  |+.++.+++.  ++++|+.+|.+++..+.+++++++.+    .  ..+++++.+|+.+.
T Consensus        28 l~~a~~VLEiGt--GySTl~lA~~--~~g~VvtvE~d~~~~~~ar~~l~~~g----~~~~~~I~~~~gda~~~   92 (202)
T 3cvo_A           28 YEEAEVILEYGS--GGSTVVAAEL--PGKHVTSVESDRAWARMMKAWLAANP----PAEGTEVNIVWTDIGPT   92 (202)
T ss_dssp             HHHCSEEEEESC--SHHHHHHHTS--TTCEEEEEESCHHHHHHHHHHHHHSC----CCTTCEEEEEECCCSSB
T ss_pred             hhCCCEEEEECc--hHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHcC----CCCCCceEEEEeCchhh
Confidence            446679999998  5777777774  36899999999999999999999887    5  67999999997653

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.87  E-value=3.8e-10  Score=68.76  Aligned_cols=62  Identities=15%  Similarity=0.060  Sum_probs=42.0

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEe--eCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQ--TGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~d~~~   83 (88)
                      +.++.+|||+|||+|.++..+++.    .+|+|+|+++ ++..+++......   ....++.++  .+|+++
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~---~~~~~v~~~~~~~D~~~  143 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVE---TFGWNLITFKSKVDVTK  143 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCC---CTTGGGEEEECSCCGGG
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhh---hcCCCeEEEeccCcHhh
Confidence            457789999999999999998886    3699999999 5333222110000   011267888  888764

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.86  E-value=5.2e-09  Score=66.42  Aligned_cols=43  Identities=14%  Similarity=0.183  Sum_probs=38.5

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      .++.+|||+|||+|.++..+++.   +.+++++|+|+.+++.++++
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~  148 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK  148 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc
Confidence            46789999999999999999886   34899999999999999887

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.86  E-value=1.5e-08  Score=66.62  Aligned_cols=64  Identities=17%  Similarity=0.098  Sum_probs=51.1

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCC-----------------CceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcc----
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGS-----------------NGEVTAVELIPEVLQFTHYNIQQGNPELLPNIK----   73 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~-----------------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~----   73 (88)
                      .++.+|+|.+||+|.+.+.+++....                 ..+++|+|+++.+++.|+.++..++     ...    
T Consensus       168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~g-----i~~~~~~  242 (541)
T 2ar0_A          168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD-----IEGNLDH  242 (541)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT-----CCCBGGG
T ss_pred             CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhC-----CCccccc
Confidence            45679999999999999998876522                 2379999999999999999988766     222    


Q ss_pred             -eEEeeCCccc
Q psy8023          74 -FEPQTGEGDI   83 (88)
Q Consensus        74 -~~~~~~d~~~   83 (88)
                       ..+.++|...
T Consensus       243 ~~~I~~gDtL~  253 (541)
T 2ar0_A          243 GGAIRLGNTLG  253 (541)
T ss_dssp             TBSEEESCTTS
T ss_pred             cCCeEeCCCcc
Confidence             6788888654

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.86  E-value=9.3e-09  Score=60.09  Aligned_cols=45  Identities=18%  Similarity=0.219  Sum_probs=36.0

Q ss_pred             HHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023           8 ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus         8 ~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      ..+....+ +.+|||+|||+|.++..++..       +++|+++.+++.++++
T Consensus        40 ~~l~~~~~-~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~   84 (219)
T 1vlm_A           40 QAVKCLLP-EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR   84 (219)
T ss_dssp             HHHHHHCC-SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT
T ss_pred             HHHHHhCC-CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc
Confidence            34443343 789999999999998776542       9999999999999886

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.84  E-value=4.5e-10  Score=68.05  Aligned_cols=34  Identities=24%  Similarity=0.305  Sum_probs=30.3

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP   51 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~   51 (88)
                      +.++.+|||+|||+|.++..+++.    .+|+|+|+++
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~  105 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT  105 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch
Confidence            467889999999999999998886    4699999998

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.84  E-value=8.6e-09  Score=59.05  Aligned_cols=38  Identities=34%  Similarity=0.573  Sum_probs=33.6

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCC--------ceEEEEeCCH
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSN--------GEVTAVELIP   51 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~--------~~v~~~D~~~   51 (88)
                      +.++.+|||+|||+|.++..+++..++.        .+++++|+++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~   65 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLH   65 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechh
Confidence            5678899999999999999999987432        7999999998

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.84  E-value=1.6e-09  Score=66.51  Aligned_cols=42  Identities=21%  Similarity=0.199  Sum_probs=36.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      ++.+|||+|||+|.++..+++..  ..+|+|+|+++.|++.+.+
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~g--a~~V~aVDvs~~mL~~a~r  126 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQNG--AKLVYAVDVGTNQLVWKLR  126 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT--CSEEEEECSSSSCSCHHHH
T ss_pred             cccEEEecCCCccHHHHHHHhCC--CCEEEEEECCHHHHHHHHH
Confidence            56799999999999999988862  4589999999999988544

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.84  E-value=6.7e-09  Score=57.90  Aligned_cols=51  Identities=14%  Similarity=0.245  Sum_probs=40.3

Q ss_pred             HHHHHHHHhhcCCCCCeEEEecCCCC-hHHHHHHHHhCCCceEEEEeCCHHHHH
Q psy8023           3 NARALELLKDNLKPGAKVLDIGSGSG-YLTACFADLVGSNGEVTAVELIPEVLQ   55 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~~~vlD~g~G~G-~~~~~l~~~~~~~~~v~~~D~~~~~~~   55 (88)
                      ...+.+.+.....++.+++|+|||.| ..+..+++..  +..|+++|+++.+++
T Consensus        22 ~e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~   73 (153)
T 2k4m_A           22 WNDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG   73 (153)
T ss_dssp             HHHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT
T ss_pred             HHHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc
Confidence            34566666666666789999999999 5888888753  568999999997666

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.84  E-value=8e-09  Score=60.20  Aligned_cols=44  Identities=34%  Similarity=0.490  Sum_probs=39.2

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      .++.+|||+|||+|.++..+++. +  .+++++|+++.+++.++++.
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~~~~~D~~~~~~~~~~~~~   74 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN-G--TRVSGIEAFPEAAEQAKEKL   74 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT-T--CEEEEEESSHHHHHHHHTTS
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHhC
Confidence            46789999999999999999887 2  68999999999999998865

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.82  E-value=1.2e-08  Score=68.12  Aligned_cols=62  Identities=19%  Similarity=0.077  Sum_probs=49.8

Q ss_pred             CCeEEEecCCCChHHHHH---HHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACF---ADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l---~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.+|+|+|||+|.++.+.   ++..+...+|+++|.|+ +...+++.++.++    ..++|+++.+|+++
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~----~~dkVtVI~gd~ee  422 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEE----WGSQVTVVSSDMRE  422 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHT----TGGGEEEEESCTTT
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhcc----CCCeEEEEeCccee
Confidence            357999999999984444   44433445799999998 6778888888888    78899999999987

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.81  E-value=9e-09  Score=64.62  Aligned_cols=59  Identities=17%  Similarity=0.112  Sum_probs=47.8

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      .++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++           ..+++++.+|..+.+|
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~~  266 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPP-----------LSGIEHVGGDMFASVP  266 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTTCCC
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhh-----------cCCCEEEeCCcccCCC
Confidence            456799999999999999999987 6789999999 888876553           1358899999876443

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.69  E-value=2.4e-08  Score=62.34  Aligned_cols=58  Identities=17%  Similarity=0.213  Sum_probs=46.3

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      .+..+|||+|||+|.++..+++.. ++.+++++|+ +.+++.+++           ..+++++.+|..+.+
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~  249 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTG-----------NENLNFVGGDMFKSI  249 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCC-----------CSSEEEEECCTTTCC
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhccc-----------CCCcEEEeCccCCCC
Confidence            356799999999999999999997 6789999999 677765443           134889999887644

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.69  E-value=1.7e-07  Score=57.65  Aligned_cols=71  Identities=20%  Similarity=0.208  Sum_probs=56.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      -+..++||-+|.|.|..+..+++.. +..+++.+|+++..++.+++.+...........+++++.+|+.+.+
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l  151 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFV  151 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTT
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHH
Confidence            3567799999999999999998874 5679999999999999999998643221123568888888887643

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.69  E-value=1.3e-07  Score=62.31  Aligned_cols=64  Identities=14%  Similarity=0.003  Sum_probs=53.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCC-cceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG--SNGEVTAVELIPEVLQFTHYNIQQGNPELLPN-IKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~d~~~   83 (88)
                      ++.+|+|.+||+|.+.+.+++.+.  ...+++|+|+++.++..|+.++..++    .. .++.+.++|...
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g----i~~~~~~I~~gDtL~  287 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHG----VPIENQFLHNADTLD  287 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTT----CCGGGEEEEESCTTT
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcC----CCcCccceEecceec
Confidence            567999999999999999988852  25689999999999999999988776    22 567888888765

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=98.69  E-value=2.8e-07  Score=57.97  Aligned_cols=59  Identities=17%  Similarity=0.181  Sum_probs=49.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++..|||+|.|.|.++..+++.. ...+++++|+++.++...++.. .       ..+++++.+|+.+
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~-~~~~vvavE~D~~l~~~L~~~~-~-------~~~l~ii~~D~l~  116 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKY-CPRQYSLLEKRSSLYKFLNAKF-E-------GSPLQILKRDPYD  116 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHH-CCSEEEEECCCHHHHHHHHHHT-T-------TSSCEEECSCTTC
T ss_pred             CCCEEEEECCCCCHHHHHHHhhC-CCCEEEEEecCHHHHHHHHHhc-c-------CCCEEEEECCccc
Confidence            35789999999999999999875 2357999999999999998876 2       2578999999864

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.68  E-value=4.6e-08  Score=66.03  Aligned_cols=63  Identities=11%  Similarity=0.035  Sum_probs=47.0

Q ss_pred             CCeEEEecCCCChHHHHHHHH---hC---------CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADL---VG---------SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~---~~---------~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +..|+|+|||+|.++.+.++.   .+         ...+|+++|.++.++...+.... ++    ..++|+++.+|+++.
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng----~~d~VtVI~gd~eev  484 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RT----WKRRVTIIESDMRSL  484 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HT----TTTCSEEEESCGGGH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cC----CCCeEEEEeCchhhc
Confidence            458999999999997543332   22         23489999999987766666555 55    567899999999874

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.60  E-value=1.2e-08  Score=62.85  Aligned_cols=59  Identities=24%  Similarity=0.243  Sum_probs=39.9

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeC----CHHHHHHHHHhhhhcCCCCCCCcceEEeeC-Cccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL----IPEVLQFTHYNIQQGNPELLPNIKFEPQTG-EGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~   83 (88)
                      +.++.+|||+|||+|.++..+++.    ++|+++|+    ++.+++    ......   ....++.++.+ |+.+
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~----~~~~~~---~~~~~v~~~~~~D~~~  143 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEE----PIPMST---YGWNLVRLQSGVDVFF  143 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCC----CCCCCS---TTGGGEEEECSCCTTT
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHH----HHHhhh---cCCCCeEEEecccccc
Confidence            466789999999999999999887    35999999    453321    111111   01256788887 7654

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.60  E-value=1.2e-07  Score=62.57  Aligned_cols=61  Identities=16%  Similarity=0.204  Sum_probs=46.5

Q ss_pred             CeEEEecCCCChHHHHHHHHhCC--------------CceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGS--------------NGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~--------------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      .+|+|.+||+|.+.+.+++.+..              ..+++|+|+++.+++.|+.++..++    ...++.+.++|..
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g----i~~~i~i~~gDtL  320 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG----IDFNFGKKNADSF  320 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT----CCCBCCSSSCCTT
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC----CCcccceeccchh
Confidence            39999999999999887665410              4579999999999999999987766    2233444666654

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=98.57  E-value=4.5e-07  Score=54.58  Aligned_cols=49  Identities=22%  Similarity=0.291  Sum_probs=41.6

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      ..++..|||.+||+|.+++...+. +.  +++|+|+++.+++.++++++.++
T Consensus       210 ~~~~~~vlD~f~GsGtt~~~a~~~-gr--~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          210 SNPNDLVLDCFMGSGTTAIVAKKL-GR--NFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHT-TC--EEEEEESCHHHHHHHHHHHHC--
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHc-CC--eEEEEeCCHHHHHHHHHHHHhcc
Confidence            367889999999999999987775 34  89999999999999999998654

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.49  E-value=1.4e-06  Score=54.95  Aligned_cols=69  Identities=20%  Similarity=0.211  Sum_probs=56.9

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCC-CCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPEL-LPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|+|.|+-+.+++... .+.++++.|+++.-++..++++++.+... ....++.+...|+..
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~-~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~  215 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTG-CCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRK  215 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGG
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhc-CCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhh
Confidence            6788999999999999999999875 66789999999999999999998876322 123578888888765

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.43  E-value=8.9e-07  Score=60.81  Aligned_cols=49  Identities=16%  Similarity=0.157  Sum_probs=40.5

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhC--CCceEEEEeCCHHHHHHH--HHhhhh
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVG--SNGEVTAVELIPEVLQFT--HYNIQQ   63 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~--~~~~v~~~D~~~~~~~~a--~~~~~~   63 (88)
                      +++.+|+|.|||+|.+.+.+++..+  ...+++|+|+++.+++.|  +.+...
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~l  372 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLF  372 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTS
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence            3577999999999999999998763  246799999999999999  555543

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.43  E-value=1.2e-06  Score=53.53  Aligned_cols=67  Identities=7%  Similarity=-0.032  Sum_probs=53.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC----CCceEEEEeCCHH--------------------------HHHHHHHhhhhcC
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG----SNGEVTAVELIPE--------------------------VLQFTHYNIQQGN   65 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~----~~~~v~~~D~~~~--------------------------~~~~a~~~~~~~~   65 (88)
                      ....|+|+|+..|..++.++....    ++.+++++|..+.                          .++.+++++++.+
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            456999999999999999887653    3678999996421                          4677899999887


Q ss_pred             CCCCC-CcceEEeeCCcccccc
Q psy8023          66 PELLP-NIKFEPQTGEGDIQYL   86 (88)
Q Consensus        66 ~~~~~-~~~~~~~~~d~~~~~~   86 (88)
                          . .++++++.||+.+.+|
T Consensus       186 ----l~~~~I~li~Gda~etL~  203 (282)
T 2wk1_A          186 ----LLDEQVRFLPGWFKDTLP  203 (282)
T ss_dssp             ----CCSTTEEEEESCHHHHST
T ss_pred             ----CCcCceEEEEeCHHHHHh
Confidence                4 3789999999887654

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.38  E-value=6e-07  Score=55.09  Aligned_cols=37  Identities=19%  Similarity=0.284  Sum_probs=29.1

Q ss_pred             CCCCCeEEEecCCC------ChHHHHHHHHhCCCceEEEEeCCHH
Q psy8023          14 LKPGAKVLDIGSGS------GYLTACFADLVGSNGEVTAVELIPE   52 (88)
Q Consensus        14 ~~~~~~vlD~g~G~------G~~~~~l~~~~~~~~~v~~~D~~~~   52 (88)
                      ++++.+|||+|||+      |.  ..+++..++.++|+++|+++.
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~  103 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF  103 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC
Confidence            56788999999955      65  455666655689999999997

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=98.38  E-value=3.7e-06  Score=53.72  Aligned_cols=61  Identities=16%  Similarity=0.063  Sum_probs=48.6

Q ss_pred             CCCCeEEEecCCCChHHHHHH-HHhCCCceEEEEeCCHHHHHHHHHhhhh--cCCCCCCC-cceEEeeC
Q psy8023          15 KPGAKVLDIGSGSGYLTACFA-DLVGSNGEVTAVELIPEVLQFTHYNIQQ--GNPELLPN-IKFEPQTG   79 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~-~~~~~~~~v~~~D~~~~~~~~a~~~~~~--~~~~~~~~-~~~~~~~~   79 (88)
                      .++..++|+|++.|..+..++ +..++.++|+++|.+|...+..+++++.  |+    .. .++++++.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~----~~~~~v~~~~~  289 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT----NFASRITVHGC  289 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS----TTGGGEEEECS
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhcc----CCCCCEEEEEe
Confidence            577899999999999999988 4443347999999999999999999987  32    23 56665543

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.35  E-value=7.8e-07  Score=53.71  Aligned_cols=71  Identities=14%  Similarity=0.024  Sum_probs=48.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh------CCC-----ceEEEEeCCH---HHHH-----------HHHHhhhhcCCC---
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV------GSN-----GEVTAVELIP---EVLQ-----------FTHYNIQQGNPE---   67 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~------~~~-----~~v~~~D~~~---~~~~-----------~a~~~~~~~~~~---   67 (88)
                      +..+|||+|+|+|..+..+++.+      .|.     .+++++|..|   +.+.           .+++++..+...   
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            44699999999999998887754      453     5899999876   4444           455555442100   


Q ss_pred             ------CCCCcceEEeeCCcccccc
Q psy8023          68 ------LLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        68 ------~~~~~~~~~~~~d~~~~~~   86 (88)
                            .....+++++.+|+.+.+|
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~  164 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELIS  164 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGG
T ss_pred             hhheeccCCceEEEEEECcHHHHHh
Confidence                  0013578899999887654

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.28  E-value=8.9e-07  Score=51.35  Aligned_cols=40  Identities=20%  Similarity=0.237  Sum_probs=30.6

Q ss_pred             HHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHH
Q psy8023           6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPE   52 (88)
Q Consensus         6 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~   52 (88)
                      ++..+.. ..++.+|||+|||+|.++..++      .+++++|+++.
T Consensus        58 ~~~~l~~-~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~   97 (215)
T 2zfu_A           58 IARDLRQ-RPASLVVADFGCGDCRLASSIR------NPVHCFDLASL   97 (215)
T ss_dssp             HHHHHHT-SCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS
T ss_pred             HHHHHhc-cCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC
Confidence            4444442 3567899999999999877762      46999999986

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.27  E-value=5.4e-06  Score=54.56  Aligned_cols=64  Identities=13%  Similarity=0.015  Sum_probs=47.6

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCC------------CceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGS------------NGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG   81 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~------------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (88)
                      ..++.+|+|-+||+|.+.....+++..            ...++|.|+++.+...|+-+...++     .....+..+|.
T Consensus       215 p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg-----~~~~~I~~~dt  289 (530)
T 3ufb_A          215 PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHG-----LEYPRIDPENS  289 (530)
T ss_dssp             CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHT-----CSCCEEECSCT
T ss_pred             cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcC-----Ccccccccccc
Confidence            345679999999999999887765422            2469999999999999998887666     33334555554


Q ss_pred             c
Q psy8023          82 D   82 (88)
Q Consensus        82 ~   82 (88)
                      .
T Consensus       290 L  290 (530)
T 3ufb_A          290 L  290 (530)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.23  E-value=5.5e-06  Score=52.57  Aligned_cols=67  Identities=19%  Similarity=0.167  Sum_probs=50.8

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCC---CCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELL---PNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~d~~~   83 (88)
                      .++++||-+|.|.|.....+++..  ..+++.+|+++..++.+++.+....+...   ...+++++.+|+.+
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~--~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~  273 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLK--PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIP  273 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTC--CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcC--CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHH
Confidence            456799999999999999998863  46999999999999999998764332111   12468888888764

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=98.10  E-value=1.8e-05  Score=49.08  Aligned_cols=49  Identities=20%  Similarity=0.249  Sum_probs=42.3

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      ..++..|||..||+|.++....+. +.  +.+++|+++..++.+++++...+
T Consensus       250 ~~~~~~VlDpF~GsGtt~~aa~~~-gr--~~ig~e~~~~~~~~~~~r~~~~~  298 (323)
T 1boo_A          250 TEPDDLVVDIFGGSNTTGLVAERE-SR--KWISFEMKPEYVAASAFRFLDNN  298 (323)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHT-TC--EEEEEESCHHHHHHHHGGGSCSC
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHc-CC--CEEEEeCCHHHHHHHHHHHHhcc
Confidence            467889999999999998887665 34  89999999999999999998754

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.07  E-value=1.8e-05  Score=50.12  Aligned_cols=35  Identities=29%  Similarity=0.246  Sum_probs=31.0

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP   51 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~   51 (88)
                      +.++++++|+||+.|+++..+.++   +++|+++|..+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~  243 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGP  243 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhh
Confidence            568999999999999999999886   45899999865

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=98.03  E-value=2.6e-05  Score=48.38  Aligned_cols=49  Identities=27%  Similarity=0.323  Sum_probs=40.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH---HHHHHHHHhhhhcC
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP---EVLQFTHYNIQQGN   65 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~---~~~~~a~~~~~~~~   65 (88)
                      -.++..|||..||+|.++...... +.  +.+++|+++   ..++.+++++.+.+
T Consensus       240 ~~~~~~vlDpF~GsGtt~~aa~~~-~r--~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          240 SHPGSTVLDFFAGSGVTARVAIQE-GR--NSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             SCTTCEEEETTCTTCHHHHHHHHH-TC--EEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCCCCEEEecCCCCCHHHHHHHHc-CC--cEEEEECCccHHHHHHHHHHHHHHcc
Confidence            467889999999999999887776 34  799999999   99999999997654

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.81  E-value=9.7e-05  Score=46.20  Aligned_cols=47  Identities=19%  Similarity=0.262  Sum_probs=38.0

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhh
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ   63 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~   63 (88)
                      ..+++|+.||.|.++..+.....+-..++++|+++.+++..+.|+..
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~   48 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH   48 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc
Confidence            35799999999999999887631123699999999999999888753

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.55  E-value=0.00035  Score=44.25  Aligned_cols=43  Identities=26%  Similarity=0.170  Sum_probs=35.6

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      .+++|+.||.|+++..+.+..  -..+.++|+++.+++..+.|+.
T Consensus         3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~   45 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFP   45 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCT
T ss_pred             CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCC
Confidence            579999999999999988763  2357899999999888877754

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.54  E-value=0.00012  Score=44.63  Aligned_cols=37  Identities=24%  Similarity=0.248  Sum_probs=29.6

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP   51 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~   51 (88)
                      +.++.+|||+|||.|.++..++... +..+++++|+..
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGv  108 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGR  108 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEec
Confidence            4677799999999999999888763 344678888874

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.51  E-value=9.7e-05  Score=45.14  Aligned_cols=38  Identities=32%  Similarity=0.376  Sum_probs=31.0

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHH
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPE   52 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~   52 (88)
                      +.++.+|||+|||.|.++...+... +...++++|+...
T Consensus        88 Lk~~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d  125 (282)
T 3gcz_A           88 VKPTGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQ  125 (282)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCT
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccC
Confidence            4677799999999999999888764 4557889998754

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.41  E-value=0.0002  Score=43.02  Aligned_cols=37  Identities=27%  Similarity=0.325  Sum_probs=31.4

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP   51 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~   51 (88)
                      +.++.+|+|+||+.|.++...+... ...+|+|+|+-.
T Consensus        76 l~~g~~VvDLGaapGGWSq~~a~~~-g~~~V~avdvG~  112 (267)
T 3p8z_A           76 VIPEGRVIDLGCGRGGWSYYCAGLK-KVTEVRGYTKGG  112 (267)
T ss_dssp             SCCCEEEEEESCTTSHHHHHHHTST-TEEEEEEECCCS
T ss_pred             CCCCCEEEEcCCCCCcHHHHHHHhc-CCCEEEEEecCC
Confidence            5678899999999999999888875 344899999866

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.33  E-value=0.00041  Score=42.75  Aligned_cols=38  Identities=26%  Similarity=0.216  Sum_probs=31.2

Q ss_pred             cCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023          13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP   51 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~   51 (88)
                      .+.++.+|||+||+.|.++..+++.. +-..|+++|+..
T Consensus        78 l~~~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~  115 (300)
T 3eld_A           78 YLRITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGI  115 (300)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCC
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEecc
Confidence            45678899999999999999999864 344688999864

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.28  E-value=0.00018  Score=44.44  Aligned_cols=38  Identities=29%  Similarity=0.295  Sum_probs=31.4

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHH
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPE   52 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~   52 (88)
                      +.++.+|+|+||+.|.++...+... ...+|+|+|+-..
T Consensus        92 l~~~~~VlDLGaapGGwsq~~~~~~-gv~~V~avdvG~~  129 (321)
T 3lkz_A           92 LEPVGKVIDLGCGRGGWCYYMATQK-RVQEVRGYTKGGP  129 (321)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHTTCT-TEEEEEEECCCST
T ss_pred             CCCCCEEEEeCCCCCcHHHHHHhhc-CCCEEEEEEcCCC
Confidence            5677899999999999999888775 3347999998764

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.27  E-value=8.9e-05  Score=41.63  Aligned_cols=44  Identities=11%  Similarity=-0.003  Sum_probs=34.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||.                 +++|+|+.|++.|+++...         ++++..+|+.+
T Consensus        10 ~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~---------~~~~~~~d~~~   53 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGN---------EGRVSVENIKQ   53 (176)
T ss_dssp             CCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTT---------TSEEEEEEGGG
T ss_pred             CCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhccc---------CcEEEEechhc
Confidence            57889999999986                 2399999999999987532         26677777654

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.24  E-value=0.00015  Score=44.37  Aligned_cols=68  Identities=18%  Similarity=0.141  Sum_probs=53.1

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .++..+.. + .+..+||+.+|+|.+++...+.   ..+++.+|.++..++..++|++.       ..+++++..|+...
T Consensus        82 ~yf~~l~~-~-n~~~~LDlfaGSGaLgiEaLS~---~d~~vfvE~~~~a~~~L~~Nl~~-------~~~~~V~~~D~~~~  149 (283)
T 2oo3_A           82 EYISVIKQ-I-NLNSTLSYYPGSPYFAINQLRS---QDRLYLCELHPTEYNFLLKLPHF-------NKKVYVNHTDGVSK  149 (283)
T ss_dssp             HHHHHHHH-H-SSSSSCCEEECHHHHHHHHSCT---TSEEEEECCSHHHHHHHTTSCCT-------TSCEEEECSCHHHH
T ss_pred             HHHHHHHH-h-cCCCceeEeCCcHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHhCc-------CCcEEEEeCcHHHH
Confidence            34444443 2 3456899999999999998883   35899999999999999999875       35789999997653

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.18  E-value=0.0013  Score=40.98  Aligned_cols=45  Identities=16%  Similarity=0.124  Sum_probs=37.8

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhh
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ   63 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~   63 (88)
                      +.+++|+.||.|.++..+....  -..+.++|+++.+++..+.|+..
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~   55 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGE   55 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSC
T ss_pred             CCcEEEECCCcCHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCC
Confidence            4689999999999999988763  33689999999999998888753

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=97.15  E-value=0.0024  Score=39.87  Aligned_cols=46  Identities=20%  Similarity=0.208  Sum_probs=36.1

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhh
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ   63 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~   63 (88)
                      .+++|+.||.|+++..+.+..-+...+.++|+++.+.+.-+.|+..
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~   49 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE   49 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC
Confidence            4799999999999999877631123578999999988887777643

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=97.12  E-value=0.0018  Score=39.82  Aligned_cols=46  Identities=15%  Similarity=0.096  Sum_probs=35.7

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhh
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGE-VTAVELIPEVLQFTHYNI   61 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~   61 (88)
                      ....+++|+.||.|+++..+.+.. -... +.++|+++.+++.-+.|+
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG-~~~~~v~a~E~d~~a~~ty~~N~   60 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLG-IQVDRYIASEVCEDSITVGMVRH   60 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTT-BCEEEEEEECCCHHHHHHHHHHT
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCC-CccceEEEEECCHHHHHHHHHhC
Confidence            455689999999999998887752 2223 699999999887766664

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.04  E-value=6.3e-05  Score=45.53  Aligned_cols=36  Identities=28%  Similarity=0.372  Sum_probs=27.2

Q ss_pred             cCCCCCeEEEecCCCChHHHHHHHH--hCC-CceEEEEe
Q psy8023          13 NLKPGAKVLDIGSGSGYLTACFADL--VGS-NGEVTAVE   48 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~G~~~~~l~~~--~~~-~~~v~~~D   48 (88)
                      .+.++.+|+|+||+-|.++...++.  .+. .+.++++|
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D  108 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGP  108 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCST
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccc
Confidence            4678999999999999999999887  322 23455555

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.83  E-value=0.003  Score=38.90  Aligned_cols=42  Identities=19%  Similarity=0.115  Sum_probs=33.2

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      ++|+|+.||.|+++..+-+..  --.+.++|+++.+++.-+.|+
T Consensus         1 mkvidLFsG~GG~~~G~~~aG--~~~v~a~e~d~~a~~ty~~N~   42 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAG--FRIICANEYDKSIWKTYESNH   42 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTT--CEEEEEEECCTTTHHHHHHHC
T ss_pred             CeEEEeCcCccHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHHC
Confidence            479999999999998886652  235789999998877766664

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=96.70  E-value=0.0063  Score=37.92  Aligned_cols=48  Identities=13%  Similarity=0.120  Sum_probs=36.9

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceE-EEEeCCHHHHHHHHHhhhh
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEV-TAVELIPEVLQFTHYNIQQ   63 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v-~~~D~~~~~~~~a~~~~~~   63 (88)
                      ...+++|+.||.|+++..+....-+...+ .++|+++.+++.-+.|+..
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~   57 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE   57 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC
Confidence            44589999999999999887752111246 7999999999888887643

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.64  E-value=0.025  Score=35.32  Aligned_cols=67  Identities=7%  Similarity=0.154  Sum_probs=48.9

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCC-------C--C-------CCCcceEEee
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNP-------E--L-------LPNIKFEPQT   78 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-------~--~-------~~~~~~~~~~   78 (88)
                      .+...|+.+|||.......+.... ++.+++-+|. |+.++.-++.+...+.       .  .       ....++.++.
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~-~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~  173 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMF-PHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAA  173 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHC-TTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEE
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcC-CCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEe
Confidence            355789999999999999888764 4667888888 7788888777765410       0  0       0136788999


Q ss_pred             CCccc
Q psy8023          79 GEGDI   83 (88)
Q Consensus        79 ~d~~~   83 (88)
                      .|+.+
T Consensus       174 ~DL~d  178 (334)
T 1rjd_A          174 CDLND  178 (334)
T ss_dssp             CCTTC
T ss_pred             cCCCC
Confidence            98876

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=96.50  E-value=0.0047  Score=40.44  Aligned_cols=43  Identities=16%  Similarity=0.125  Sum_probs=34.6

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      .+++|+.||.|+++..+.+..  -..+.++|+++.+++.-+.|+.
T Consensus        89 ~~viDLFaG~GGlslG~~~aG--~~~v~avE~d~~A~~ty~~N~~  131 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESIG--GQCVFTSEWNKHAVRTYKANHY  131 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTTT--EEEEEEECCCHHHHHHHHHHSC
T ss_pred             ceEEEecCCccHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHhcc
Confidence            479999999999998887652  2248999999988887777763

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=96.24  E-value=0.0077  Score=38.41  Aligned_cols=34  Identities=24%  Similarity=0.096  Sum_probs=27.2

Q ss_pred             CCeEEEecCCCChHHHHHHHH----------------hCCCceEEEEeCC
Q psy8023          17 GAKVLDIGSGSGYLTACFADL----------------VGSNGEVTAVELI   50 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~----------------~~~~~~v~~~D~~   50 (88)
                      ..+|+|+||++|..+..+...                -.|..+|+..|+.
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp  102 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLF  102 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCC
Confidence            468999999999999987766                1256789999987

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=96.14  E-value=0.044  Score=35.04  Aligned_cols=46  Identities=22%  Similarity=0.265  Sum_probs=34.6

Q ss_pred             CCeEEEecCCCChHHHHHHHHhC------CCceEEEEeCCHHHHHHHHHhhh
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVG------SNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~------~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      +-.|+|+|.|.|.+...+++.+.      ...+++.+|+|+...+.=++.+.
T Consensus        81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  132 (387)
T 1zkd_A           81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  132 (387)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc
Confidence            34799999999999988876542      23489999999977665444443

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.08  E-value=0.018  Score=36.42  Aligned_cols=45  Identities=31%  Similarity=0.390  Sum_probs=36.6

Q ss_pred             cCCCCCeEEEecCCC-ChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPGAKVLDIGSGS-GYLTACFADLVGSNG-EVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~   59 (88)
                      .+.++.+||.+|+|. |..++.+++..  +. +|+++|.+++.++.+++
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 2dph_A          182 GVKPGSHVYIAGAGPVGRCAAAGARLL--GAACVIVGDQNPERLKLLSD  228 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHH--TCSEEEEEESCHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHH
Confidence            367889999999875 77788888876  44 89999999988887765

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=95.81  E-value=0.0077  Score=38.24  Aligned_cols=38  Identities=18%  Similarity=0.161  Sum_probs=27.9

Q ss_pred             CCeEEEecCCCChHHHHHHHH--------h------CCCceEEEEeCCHHHH
Q psy8023          17 GAKVLDIGSGSGYLTACFADL--------V------GSNGEVTAVELIPEVL   54 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~--------~------~~~~~v~~~D~~~~~~   54 (88)
                      ..+|+|+|||+|..+..+...        .      .|..+|+..|+...-.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDF  104 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDF  104 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCH
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccch
Confidence            468999999999999887222        1      2567889989866443

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.76  E-value=0.045  Score=33.73  Aligned_cols=45  Identities=24%  Similarity=0.327  Sum_probs=37.0

Q ss_pred             CCCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          14 LKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        14 ~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      +.++.+||-.|+|. |..++.+++..  +.+|+++|.+++..+.+++.
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~l  209 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAM--GLRVAAVDIDDAKLNLARRL  209 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHc
Confidence            56888999999874 88888888886  45999999999988887663

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.63  E-value=0.042  Score=34.32  Aligned_cols=46  Identities=17%  Similarity=0.359  Sum_probs=36.5

Q ss_pred             cCCCCCeEEEecCCC-ChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHh
Q psy8023          13 NLKPGAKVLDIGSGS-GYLTACFADLVGSNG-EVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~   60 (88)
                      .+.++.+||.+|+|. |..++.+++..  +. +|+++|.+++.++.+++.
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~--Ga~~Vi~~~~~~~~~~~a~~l  234 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVC--GASIIIAVDIVESRLELAKQL  234 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHH--TCSEEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHHc
Confidence            357888999999874 77777888876  34 699999999888888653

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=95.59  E-value=0.029  Score=36.36  Aligned_cols=47  Identities=21%  Similarity=0.321  Sum_probs=36.1

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCC----CceEEEEeCCHHHHHHHHHhhhh
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGS----NGEVTAVELIPEVLQFTHYNIQQ   63 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~----~~~v~~~D~~~~~~~~a~~~~~~   63 (88)
                      ...|+|+|.|.|.+...+++.+..    ..+++.+|+|+.+.+.=++++..
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            468999999999998888765421    34799999999777666666653

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.58  E-value=0.071  Score=33.14  Aligned_cols=44  Identities=27%  Similarity=0.355  Sum_probs=35.0

Q ss_pred             CCCCCeEEEecCCC-ChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGSGS-GYLTACFADLVGSNG-EVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~   59 (88)
                      +.++.+||-+|+|. |..++.+++..  +. +|+++|.+++.++.+++
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~  214 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAM--GAAQVVVTDLSATRLSKAKE  214 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence            67889999999863 66777777775  44 89999999988887765

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.43  E-value=0.19  Score=29.68  Aligned_cols=62  Identities=16%  Similarity=0.091  Sum_probs=42.3

Q ss_pred             CCCeEEEecC-CCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGS-GSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~-G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.|+ |.| ++..+++.+ ..+.+|+.++.++..++...+.+...+     ..++.++..|+.+
T Consensus        21 ~~k~vlITGasg~G-IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dl~~   84 (266)
T 3o38_A           21 KGKVVLVTAAAGTG-IGSTTARRALLEGADVVISDYHERRLGETRDQLADLG-----LGRVEAVVCDVTS   84 (266)
T ss_dssp             TTCEEEESSCSSSS-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC-----SSCEEEEECCTTC
T ss_pred             CCCEEEEECCCCCc-hHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-----CCceEEEEeCCCC
Confidence            4567777776 444 344444432 246689999999988887777776544     4678899999875

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=95.42  E-value=0.17  Score=30.44  Aligned_cols=61  Identities=18%  Similarity=0.129  Sum_probs=44.2

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--|.+. .++..+++.+ ..+.+|+.+|.+++.++.+.+.++..+      .++.++..|+.+
T Consensus         6 ~gKvalVTGas~-GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g------~~~~~~~~Dvt~   67 (254)
T 4fn4_A            6 KNKVVIVTGAGS-GIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG------KEVLGVKADVSK   67 (254)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTS
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCCC
Confidence            566777666554 4555555543 346799999999999988888887654      467888888875

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=95.28  E-value=0.031  Score=38.38  Aligned_cols=45  Identities=24%  Similarity=0.183  Sum_probs=34.2

Q ss_pred             CeEEEecCCCChHHHHHHHHhC---CC-ceEEEEeCCHHHHHHHHHhhh
Q psy8023          18 AKVLDIGSGSGYLTACFADLVG---SN-GEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~---~~-~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      .+|+|+.||.|+++.-+.+...   .. -.+.++|+++.+++--+.|+.
T Consensus       213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp  261 (784)
T 4ft4_B          213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP  261 (784)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT
T ss_pred             CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC
Confidence            4799999999999998876531   11 147899999988877766643

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=95.28  E-value=0.0052  Score=38.82  Aligned_cols=47  Identities=11%  Similarity=0.051  Sum_probs=34.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHH---------------hCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023          16 PGAKVLDIGSGSGYLTACFADL---------------VGSNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~---------------~~~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      +..+|+|+||++|..++.+...               -.|..+|+..|+...-...+-+.+.
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~  112 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLP  112 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTT
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcc
Confidence            3458999999999887765443               2356789999998877766666554

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=95.27  E-value=0.062  Score=33.88  Aligned_cols=45  Identities=29%  Similarity=0.414  Sum_probs=35.7

Q ss_pred             cCCCCCeEEEecCCC-ChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPGAKVLDIGSGS-GYLTACFADLVGSNG-EVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~   59 (88)
                      .+.++.+||-+|+|. |..++.+++..  +. +|+++|.+++.++.+++
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~--Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLL--GAAVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHC--CCCeEEEEcCCHHHHHHHHH
Confidence            367888999999764 67777788875  44 79999999998888865

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=95.04  E-value=0.036  Score=35.54  Aligned_cols=46  Identities=15%  Similarity=0.081  Sum_probs=35.9

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCCce----EEEEeCCHHHHHHHHHhhhh
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSNGE----VTAVELIPEVLQFTHYNIQQ   63 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~~~----v~~~D~~~~~~~~a~~~~~~   63 (88)
                      .+|+|+.||.|+....+-+...+-.-    +.++|+++.+++.-+.++..
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~   60 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK   60 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence            48999999999999998775311123    78899999998887777754

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=95.00  E-value=0.053  Score=36.70  Aligned_cols=41  Identities=12%  Similarity=-0.014  Sum_probs=30.0

Q ss_pred             CCeEEEecCCCChHHHHHHHHhC-----------CCceEEEEeC---CHHHHHHH
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVG-----------SNGEVTAVEL---IPEVLQFT   57 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~-----------~~~~v~~~D~---~~~~~~~a   57 (88)
                      .-+|+|+|.|+|...+...+.+.           ...+++.+|.   +.+-+..+
T Consensus        59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~  113 (689)
T 3pvc_A           59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASA  113 (689)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHH
T ss_pred             ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHH
Confidence            35899999999999888877541           1267999999   55555443

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=94.98  E-value=0.12  Score=31.83  Aligned_cols=46  Identities=30%  Similarity=0.386  Sum_probs=36.7

Q ss_pred             cCCCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .+.++.+|+-.|+|. |..++.+++.. ...+|+++|.+++.++.+++
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~-g~~~Vi~~~~~~~~~~~~~~  214 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAV-SAARVIAVDLDDDRLALARE  214 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHH-CCCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHH
Confidence            467888999999864 66777778776 34689999999998888766

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=94.93  E-value=0.21  Score=29.36  Aligned_cols=61  Identities=13%  Similarity=-0.061  Sum_probs=42.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG--SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+.  .+.+|+.++.++...+...+.+...+      .++.++..|+.+
T Consensus         3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~   65 (276)
T 1wma_A            3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG------LSPRFHQLDIDD   65 (276)
T ss_dssp             CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT------CCCEEEECCTTC
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC------CeeEEEECCCCC
Confidence            455666555 67888888877653  35689999999877776666665433      356777788765

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=94.92  E-value=0.24  Score=29.69  Aligned_cols=63  Identities=6%  Similarity=-0.153  Sum_probs=44.5

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .++++|-.| |+|+++..+++.+ ..+.+|+.++.++...+.+.+.+...+     ..++.++..|+.+.
T Consensus        11 ~~k~vlITG-as~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dl~~~   74 (311)
T 3o26_A           11 KRRCAVVTG-GNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN-----HENVVFHQLDVTDP   74 (311)
T ss_dssp             -CCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-----CCSEEEEECCTTSC
T ss_pred             CCcEEEEec-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-----CCceEEEEccCCCc
Confidence            455666656 4566777776654 346789999999988877777776544     45788999998763

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=94.91  E-value=0.15  Score=31.55  Aligned_cols=44  Identities=25%  Similarity=0.356  Sum_probs=34.7

Q ss_pred             CCCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +.++.+||-.|+|. |..++.+++..  +.+|+++|.+++.++.+++
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~  210 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN  210 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH
Confidence            67888999999763 66677777765  4579999999988888765

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=94.72  E-value=0.19  Score=28.42  Aligned_cols=44  Identities=20%  Similarity=0.223  Sum_probs=34.0

Q ss_pred             HHHHHHhhcCC-CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeC
Q psy8023           5 RALELLKDNLK-PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL   49 (88)
Q Consensus         5 ~~~~~~~~~~~-~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~   49 (88)
                      .++++....+. -..-|+|+|-|+|.+=-++.+.+ |+-.++.+|-
T Consensus        28 ~~L~~a~~~v~~~~GpVlElGLGNGRTydHLRe~~-P~R~I~vfDR   72 (174)
T 3iht_A           28 ACLEHAIAQTAGLSGPVYELGLGNGRTYHHLRQHV-QGREIYVFER   72 (174)
T ss_dssp             HHHHHHHHHTTTCCSCEEEECCTTCHHHHHHHHHC-CSSCEEEEES
T ss_pred             HHHHHHHHHhcCCCCceEEecCCCChhHHHHHHhC-CCCcEEEEEe
Confidence            34555555443 23479999999999999999998 7788999985

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=94.67  E-value=0.092  Score=32.79  Aligned_cols=35  Identities=11%  Similarity=0.122  Sum_probs=25.5

Q ss_pred             CCCCCeEEEecC------CCChHHHHHHHHhCCC-ceEEEEeCCH
Q psy8023          14 LKPGAKVLDIGS------GSGYLTACFADLVGSN-GEVTAVELIP   51 (88)
Q Consensus        14 ~~~~~~vlD~g~------G~G~~~~~l~~~~~~~-~~v~~~D~~~   51 (88)
                      ++-+++|||+|+      ..|.   ..++++.|. +.++++|+.+
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS---~VLr~~~p~g~~VVavDL~~  148 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGT---AVLRQWLPTGTLLVDSDLND  148 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH---HHHHHHSCTTCEEEEEESSC
T ss_pred             ecCCCEEEeCCCCCCCCCCCcH---HHHHHhCCCCcEEEEeeCcc
Confidence            467899999997      4455   344444565 6999999987

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=94.59  E-value=0.37  Score=29.51  Aligned_cols=63  Identities=5%  Similarity=0.032  Sum_probs=44.2

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++++|-.|++ |+++..+++.+ ..+.+|++++.+++.++.+.+.+...+    ...++.++..|+.+
T Consensus         7 ~~k~vlVTGas-~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dl~~   70 (319)
T 3ioy_A            7 AGRTAFVTGGA-NGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEG----SGPEVMGVQLDVAS   70 (319)
T ss_dssp             TTCEEEEETTT-STHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEECCTTC
T ss_pred             CCCEEEEcCCc-hHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CCCeEEEEECCCCC
Confidence            45677777755 55666666654 346789999999988887777766544    23478888888775

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=94.57  E-value=0.053  Score=33.56  Aligned_cols=45  Identities=22%  Similarity=0.185  Sum_probs=35.8

Q ss_pred             cCCCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .+.++.+||-.|+|. |..++.+++..  +.+|+++|.+++..+.+++
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~  218 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAM--GAEVSVFARNEHKKQDALS  218 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSSTTHHHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHh
Confidence            367889999999864 66777778776  4589999999988887765

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.56  E-value=0.18  Score=31.34  Aligned_cols=45  Identities=22%  Similarity=0.307  Sum_probs=36.0

Q ss_pred             CCCCCeEEEecCCC-ChHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHh
Q psy8023          14 LKPGAKVLDIGSGS-GYLTACFADLVGSNGE-VTAVELIPEVLQFTHYN   60 (88)
Q Consensus        14 ~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~   60 (88)
                      +.++.+||-.|+|. |..++.+++..  +.+ |+++|.+++..+.+++.
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKAA--GACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHT--TCCSEEEEESCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh
Confidence            67888999999763 66777778775  445 99999999999888876

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.53  E-value=0.077  Score=33.25  Aligned_cols=45  Identities=22%  Similarity=0.240  Sum_probs=35.4

Q ss_pred             cCCCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .+.++.+||-+|+|. |..++.+++..  +.+|++++.+++.++.+++
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence            367889999999873 66777777775  5589999999988887765

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.51  E-value=0.34  Score=28.70  Aligned_cols=62  Identities=13%  Similarity=0.058  Sum_probs=44.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++++|-.| |+|+++..+++.+ ..+.+|+.++.+++.++.+.+.+...+     ..++.++..|+.+
T Consensus         9 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dv~~   71 (262)
T 3pk0_A            9 QGRSVVVTG-GTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLG-----SGKVIGVQTDVSD   71 (262)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTS-----SSCEEEEECCTTS
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC-----CCcEEEEEcCCCC
Confidence            455666555 5567777776654 245689999999988887777766544     3578888888875

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=94.49  E-value=0.37  Score=28.17  Aligned_cols=61  Identities=11%  Similarity=0.060  Sum_probs=43.5

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.|+ +|.++..+++.+ ..+.+|+.++.+++.++...+.+...+      .++.++..|+.+
T Consensus         8 ~~k~vlITGa-s~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~   69 (253)
T 3qiv_A            8 ENKVGIVTGS-GGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG------GTAISVAVDVSD   69 (253)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CEEEEEECCTTS
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC------CcEEEEEccCCC
Confidence            4567776664 566677766654 246689999999988887777766543      467888888775

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.48  E-value=0.14  Score=31.94  Aligned_cols=45  Identities=22%  Similarity=0.251  Sum_probs=35.6

Q ss_pred             CCCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          14 LKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        14 ~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      +.++.+||-.|+|. |..++.+++..  +.+|+++|.+++.++.+++.
T Consensus       187 ~~~g~~VlV~G~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~l  232 (363)
T 3uog_A          187 LRAGDRVVVQGTGGVALFGLQIAKAT--GAEVIVTSSSREKLDRAFAL  232 (363)
T ss_dssp             CCTTCEEEEESSBHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEecCchhHHHHHHc
Confidence            56888999999763 66777777775  55999999999888887663

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=94.43  E-value=0.1  Score=37.22  Aligned_cols=44  Identities=25%  Similarity=0.233  Sum_probs=34.6

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      .+++|+.||.|+++..+.+.. -.-.+.++|+++.+.+.-+.|+.
T Consensus       541 l~~iDLFaG~GGlslGl~~AG-~~~vv~avEid~~A~~ty~~N~p  584 (1002)
T 3swr_A          541 LRTLDVFSGCGGLSEGFHQAG-ISDTLWAIEMWDPAAQAFRLNNP  584 (1002)
T ss_dssp             EEEEEESCTTSHHHHHHHHHT-SEEEEEEECSSHHHHHHHHHHCT
T ss_pred             CeEEEeccCccHHHHHHHHCC-CCceEEEEECCHHHHHHHHHhCC
Confidence            479999999999999987752 11258899999998887776653

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=94.29  E-value=0.46  Score=28.80  Aligned_cols=61  Identities=7%  Similarity=0.004  Sum_probs=43.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.|++ |+++..+++.+ ..+.+|+.++.++..++.+.+.+...+      .++.++..|+.+
T Consensus        30 ~gk~vlVTGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dv~d   91 (301)
T 3tjr_A           30 DGRAAVVTGGA-SGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG------FDAHGVVCDVRH   91 (301)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTC
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CceEEEEccCCC
Confidence            35567766655 66666666654 246689999999988888777776543      467888888775

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=94.29  E-value=0.14  Score=31.71  Aligned_cols=45  Identities=22%  Similarity=0.248  Sum_probs=34.6

Q ss_pred             CCCCCeEEEecCCC-ChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHh
Q psy8023          14 LKPGAKVLDIGSGS-GYLTACFADLVGSNG-EVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        14 ~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~   60 (88)
                      +.++.+|+-+|+|. |..++.+++..  +. +|+++|.+++.++.+++.
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~l  210 (352)
T 3fpc_A          164 IKLGDTVCVIGIGPVGLMSVAGANHL--GAGRIFAVGSRKHCCDIALEY  210 (352)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTT--TCSSEEEECCCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHh
Confidence            67888999999763 66667777764  44 799999999888877764

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=94.26  E-value=0.4  Score=28.31  Aligned_cols=61  Identities=16%  Similarity=0.067  Sum_probs=43.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+ ..+.+|+.++.+++.++...+.+...+      .++.++..|+.+
T Consensus        28 ~~k~vlITG-as~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~   89 (262)
T 3rkr_A           28 SGQVAVVTG-ASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG------GEAESHACDLSH   89 (262)
T ss_dssp             TTCEEEESS-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CEEEEEECCTTC
T ss_pred             CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC------CceeEEEecCCC
Confidence            355677666 5567777776654 346689999999988887777776543      467888888765

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.15  E-value=0.28  Score=30.72  Aligned_cols=45  Identities=24%  Similarity=0.298  Sum_probs=35.5

Q ss_pred             CCCCCeEEEecCCC-ChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHh
Q psy8023          14 LKPGAKVLDIGSGS-GYLTACFADLVGSNG-EVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        14 ~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~   60 (88)
                      +.++.+||-.|+|. |..++.+++..  +. +|+++|.+++..+.+++.
T Consensus       180 ~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~l  226 (370)
T 4ej6_A          180 IKAGSTVAILGGGVIGLLTVQLARLA--GATTVILSTRQATKRRLAEEV  226 (370)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHc
Confidence            67889999999863 66777777775  44 899999999888887763

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.14  E-value=0.16  Score=31.35  Aligned_cols=46  Identities=13%  Similarity=0.088  Sum_probs=34.8

Q ss_pred             cCCCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .+ ++.+||-+|+|. |..++.+++...++.+|+++|.+++.++.+++
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~  214 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE  214 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH
Confidence            36 888999999863 66667777765224589999999988887765

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=94.11  E-value=0.27  Score=29.55  Aligned_cols=61  Identities=13%  Similarity=0.078  Sum_probs=43.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--|.+ +.++..+++.+ ..+.+|+.+|.+++.++.+.+.+...+      .++.++..|+.+
T Consensus         8 ~gKvalVTGas-~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g------~~~~~~~~Dv~~   69 (255)
T 4g81_D            8 TGKTALVTGSA-RGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG------YDAHGVAFDVTD   69 (255)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT------CCEEECCCCTTC
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCC
Confidence            56666666644 55566666654 346799999999998888877777654      467778888765

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=94.11  E-value=0.4  Score=28.68  Aligned_cols=61  Identities=18%  Similarity=0.041  Sum_probs=41.8

Q ss_pred             CCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++|-.| |+|+++..+++.+ ..+.+|++++.+++.++...+.+...+     ..++.++..|+.+
T Consensus        28 ~k~vlITG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~d   89 (286)
T 1xu9_A           28 GKKVIVTG-ASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG-----AASAHYIAGTMED   89 (286)
T ss_dssp             TCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-----CSEEEEEECCTTC
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC-----CCceEEEeCCCCC
Confidence            45677666 5577777776654 245689999999987776666555444     3467788888765

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.08  E-value=0.49  Score=28.00  Aligned_cols=61  Identities=11%  Similarity=0.015  Sum_probs=42.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.|++. .++..+++.+ ..+.+|+.++.+++.++...+.+...+      .++.++..|+.+
T Consensus        10 ~~k~vlVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~   71 (264)
T 3ucx_A           10 TDKVVVISGVGP-ALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG------RRALSVGTDITD   71 (264)
T ss_dssp             TTCEEEEESCCT-THHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTC
T ss_pred             CCcEEEEECCCc-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEcCCCC
Confidence            466777777654 4555555543 246689999999988887777766543      467888888765

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=94.07  E-value=0.11  Score=29.36  Aligned_cols=44  Identities=18%  Similarity=0.286  Sum_probs=32.4

Q ss_pred             CCCCCeEEEecC--CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGS--GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +.++++|+..|+  |.|.....++...  +.+|+++|.+++..+.+++
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~   81 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSR   81 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHT
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence            567889999994  4566666666654  4589999999987766654

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=94.05  E-value=0.27  Score=29.02  Aligned_cols=61  Identities=21%  Similarity=0.114  Sum_probs=42.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.|++ |+++..+++.+ ..+.+|+.++.+++.++.+.+.+...+      .++.++..|+.+
T Consensus         6 ~~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~   67 (252)
T 3h7a_A            6 RNATVAVIGAG-DYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG------GRIVARSLDARN   67 (252)
T ss_dssp             CSCEEEEECCS-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT------CEEEEEECCTTC
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEECcCCC
Confidence            45667766655 55666666654 246689999999888777777776544      468888888765

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=94.01  E-value=0.19  Score=31.41  Aligned_cols=44  Identities=20%  Similarity=0.083  Sum_probs=34.4

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      ...++|+-+||  |..+..+++.+....+++..|.+.+.++.+++.
T Consensus        14 g~~mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~~   57 (365)
T 3abi_A           14 GRHMKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNENLEKVKEF   57 (365)
T ss_dssp             --CCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHTTT
T ss_pred             CCccEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhcc
Confidence            34578999988  778888888877778899999999888776554

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=93.99  E-value=0.6  Score=28.81  Aligned_cols=61  Identities=11%  Similarity=0.100  Sum_probs=44.8

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..|+++|||.=.-...+..  +++.+++=+| .|..++..++.+...+..  ...+..++..|+.+
T Consensus       104 ~QvV~LGaGlDTra~Rl~~--~~~~~v~evD-~P~vi~~k~~lL~~~~~~--~~~~~~~v~~Dl~d  164 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDW--PTGTTVYEID-QPKVLAYKSTTLAEHGVT--PTADRREVPIDLRQ  164 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCC--CTTCEEEEEE-CHHHHHHHHHHHHHTTCC--CSSEEEEEECCTTS
T ss_pred             CeEEEeCCCCCchhhhccC--CCCcEEEEcC-CHHHHHHHHHHHHhcCCC--CCCCeEEEecchHh
Confidence            4799999998876444331  2346899999 599999999998754311  25678899999876

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=93.94  E-value=0.42  Score=29.42  Aligned_cols=45  Identities=29%  Similarity=0.353  Sum_probs=35.6

Q ss_pred             cCCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .+.++++||-.|+| .|.....+++..  +.+|++++.+++.++.+++
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~  206 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE  206 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence            36788899999985 466777777765  4599999999988887765

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=93.93  E-value=0.42  Score=28.20  Aligned_cols=61  Identities=16%  Similarity=0.029  Sum_probs=42.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|.++..+++.+ ..+.+|+.++.+++.++.+.+.+...+      .++.++..|+.+
T Consensus         5 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~   66 (257)
T 3imf_A            5 KEKVVIITG-GSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFP------GQILTVQMDVRN   66 (257)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCST------TCEEEEECCTTC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCCC
Confidence            455666655 5566777766654 246689999999988887777665433      468888888775

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=93.86  E-value=0.12  Score=32.28  Aligned_cols=45  Identities=13%  Similarity=0.203  Sum_probs=34.6

Q ss_pred             cCCCCCeEEEecCC-CChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPGAKVLDIGSG-SGYLTACFADLVGSNG-EVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~   59 (88)
                      .+.++.+||-+|+| .|..++.+++..  +. +|+++|.+++.++.+++
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~  234 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAA--GASRIIGVGTHKDKFPKAIE  234 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHH--TCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHH
Confidence            35678899999976 366677777776  44 79999999988877765

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.84  E-value=0.18  Score=27.08  Aligned_cols=40  Identities=13%  Similarity=0.095  Sum_probs=28.1

Q ss_pred             CeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHH
Q psy8023          18 AKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .+|+-+|+  |.++..+++.+. .+.+|+++|.+++.++.+++
T Consensus         8 ~~viIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~   48 (140)
T 3fwz_A            8 NHALLVGY--GRVGSLLGEKLLASDIPLVVIETSRTRVDELRE   48 (140)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH
T ss_pred             CCEEEECc--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence            46888776  555555555442 25579999999988877664

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=93.82  E-value=0.26  Score=30.41  Aligned_cols=44  Identities=23%  Similarity=0.295  Sum_probs=36.0

Q ss_pred             CCCCCeEEEecC--CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGS--GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +.++++||-.|+  |.|.....+++..  +.+|++++.+++.++.+++
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~  209 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLF--GARVIATAGSEDKLRRAKA  209 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh
Confidence            567889999997  5777888888875  5589999999988887764

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=93.78  E-value=0.13  Score=32.19  Aligned_cols=45  Identities=20%  Similarity=0.370  Sum_probs=34.3

Q ss_pred             cCCCCCeEEEecCCC-ChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPGAKVLDIGSGS-GYLTACFADLVGSNG-EVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~   59 (88)
                      .+.++.+||-.|+|. |..++.+++..  +. +|+++|.+++.++.+++
T Consensus       189 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~  235 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAVGLAAVMGCHSA--GAKRIIAVDLNPDKFEKAKV  235 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHH
Confidence            356788999999753 66667777765  44 79999999988887765

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=93.53  E-value=0.6  Score=27.15  Aligned_cols=61  Identities=10%  Similarity=-0.054  Sum_probs=42.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++++|-.| |+|+++..+++.+ ..+.+|+.++.++...+...+.++..+      .++.++..|+.+
T Consensus         4 ~~k~vlITG-as~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~   65 (247)
T 3lyl_A            4 NEKVALVTG-ASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG------FKARGLVLNISD   65 (247)
T ss_dssp             TTCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT------CCEEEEECCTTC
T ss_pred             CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEecCCC
Confidence            355666666 5566777766654 246689999999988877777766543      467788888765

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=93.53  E-value=0.32  Score=32.86  Aligned_cols=42  Identities=17%  Similarity=0.113  Sum_probs=31.2

Q ss_pred             CeEEEecCCCChHHHHHHHHhC-----------CCceEEEEeC---CHHHHHHHHH
Q psy8023          18 AKVLDIGSGSGYLTACFADLVG-----------SNGEVTAVEL---IPEVLQFTHY   59 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~-----------~~~~v~~~D~---~~~~~~~a~~   59 (88)
                      -+|+|+|-|+|.......+.+.           ...+++++|.   +++-+..+..
T Consensus        68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~  123 (676)
T 3ps9_A           68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQ  123 (676)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHT
T ss_pred             eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHH
Confidence            4899999999998888766541           1257999999   7776664443

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=93.50  E-value=0.11  Score=32.13  Aligned_cols=44  Identities=20%  Similarity=0.108  Sum_probs=36.0

Q ss_pred             CCCCCeEEEecCC--CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGSG--SGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~G--~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +.++.+||-.|+|  .|..+..+++..  +.+|++++.+++.++.+++
T Consensus       142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~  187 (340)
T 3gms_A          142 LQRNDVLLVNACGSAIGHLFAQLSQIL--NFRLIAVTRNNKHTEELLR  187 (340)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh
Confidence            5778899999986  677888888876  4589999999887777766

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=93.50  E-value=0.16  Score=31.68  Aligned_cols=45  Identities=16%  Similarity=0.278  Sum_probs=34.3

Q ss_pred             cCCCCCeEEEecCCC-ChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPGAKVLDIGSGS-GYLTACFADLVGSNG-EVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~   59 (88)
                      .+.++.+||-.|+|. |..++.+++..  +. +|+++|.+++.++.+++
T Consensus       187 ~~~~g~~VlV~GaG~vG~~avqla~~~--Ga~~Vi~~~~~~~~~~~~~~  233 (373)
T 2fzw_A          187 KLEPGSVCAVFGLGGVGLAVIMGCKVA--GASRIIGVDINKDKFARAKE  233 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHH--TCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence            356788999999763 56667777776  44 79999999988887765

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=93.46  E-value=0.67  Score=27.63  Aligned_cols=60  Identities=12%  Similarity=-0.013  Sum_probs=41.5

Q ss_pred             CCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++|-.|+ +|+++..+++.+ ..+.+|+.++.+++.++.+.+.+...+      .++.++..|+.+
T Consensus         4 ~k~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dv~d   64 (264)
T 3tfo_A            4 DKVILITGA-SGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAG------GTALAQVLDVTD   64 (264)
T ss_dssp             TCEEEESST-TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT------CEEEEEECCTTC
T ss_pred             CCEEEEeCC-ccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEcCCCC
Confidence            456666664 466666666654 346789999999988887777776543      467777788765

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=93.45  E-value=0.26  Score=31.16  Aligned_cols=45  Identities=18%  Similarity=0.262  Sum_probs=34.6

Q ss_pred             CCCCCeEEEecCC-CChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHh
Q psy8023          14 LKPGAKVLDIGSG-SGYLTACFADLVGSNG-EVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~   60 (88)
                      +.++.+||-+|+| .|..++.+++..  +. +|+++|.+++.++.+++.
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~~~~l  257 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHA--GASKVILSEPSEVRRNLAKEL  257 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHc
Confidence            5678899999875 355666677765  44 899999999888888764

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=93.45  E-value=0.16  Score=31.78  Aligned_cols=45  Identities=11%  Similarity=0.180  Sum_probs=34.0

Q ss_pred             cCCCCCeEEEecCCC-ChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPGAKVLDIGSGS-GYLTACFADLVGSNG-EVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~   59 (88)
                      .+.++.+||-.|+|. |...+.+++..  +. +|+++|.+++.++.+++
T Consensus       188 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~  234 (374)
T 2jhf_A          188 KVTQGSTCAVFGLGGVGLSVIMGCKAA--GAARIIGVDINKDKFAKAKE  234 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence            356788999999763 56666777765  44 79999999988877764

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=93.44  E-value=0.53  Score=27.77  Aligned_cols=61  Identities=15%  Similarity=0.024  Sum_probs=41.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+ ..+.+|+.++.+++..+...+.+...+      .++.++..|+.+
T Consensus        11 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~d   72 (256)
T 3gaf_A           11 NDAVAIVTG-AAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAG------GKAIGLECNVTD   72 (256)
T ss_dssp             TTCEEEECS-CSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTT------CCEEEEECCTTC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEECCCCC
Confidence            455666655 4556666666553 235689999999988877777666543      467788888765

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=93.40  E-value=0.31  Score=29.54  Aligned_cols=62  Identities=13%  Similarity=0.043  Sum_probs=42.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+ ..+.+|+.++.+++.++...+.+...+     ..++.++..|+.+
T Consensus        40 ~~k~vlVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dv~d  102 (293)
T 3rih_A           40 SARSVLVTG-GTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELG-----AGNVIGVRLDVSD  102 (293)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSS-----SSCEEEEECCTTC
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC-----CCcEEEEEEeCCC
Confidence            345566555 5667777776654 246689999999877777766665543     3578888888875

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=93.37  E-value=0.16  Score=31.72  Aligned_cols=45  Identities=16%  Similarity=0.274  Sum_probs=34.3

Q ss_pred             cCCCCCeEEEecCC-CChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPGAKVLDIGSG-SGYLTACFADLVGSNG-EVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~   59 (88)
                      .+.++.+||-+|+| .|..++.+++..  +. +|+++|.+++.++.+++
T Consensus       192 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~  238 (376)
T 1e3i_A          192 KVTPGSTCAVFGLGCVGLSAIIGCKIA--GASRIIAIDINGEKFPKAKA  238 (376)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence            35678899999976 366667777765  44 79999999988877765

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=93.34  E-value=0.74  Score=27.64  Aligned_cols=61  Identities=11%  Similarity=-0.035  Sum_probs=42.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+ ..+.+|+.++.+++.++...+.+...+      .++.++..|+.+
T Consensus        27 ~~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dv~d   88 (283)
T 3v8b_A           27 PSPVALITG-AGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAG------GQAIALEADVSD   88 (283)
T ss_dssp             CCCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTT------CCEEEEECCTTC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCCC
Confidence            455667666 4566666666654 246689999999988777776665433      467888888765

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=93.33  E-value=0.73  Score=27.55  Aligned_cols=61  Identities=7%  Similarity=-0.047  Sum_probs=41.5

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+ ..+.+|+.++.+++.++...+.+...+      .++.++..|+.+
T Consensus        23 ~~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dv~d   84 (279)
T 3sju_A           23 RPQTAFVTG-VSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAG------HDVDGSSCDVTS   84 (279)
T ss_dssp             --CEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT------CCEEEEECCTTC
T ss_pred             CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEECCCCC
Confidence            455677666 5566666666654 246689999999988877777666533      467888888765

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=93.29  E-value=0.13  Score=32.17  Aligned_cols=44  Identities=18%  Similarity=0.286  Sum_probs=34.8

Q ss_pred             CCCCCeEEEecCC-CChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGSG-SGYLTACFADLVGSNG-EVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~   59 (88)
                      +.++.+||-+|+| .|..++.+++..  +. +|+++|.+++.++.+++
T Consensus       191 ~~~g~~VlV~GaG~vG~~a~q~a~~~--Ga~~Vi~~~~~~~~~~~a~~  236 (378)
T 3uko_A          191 VEPGSNVAIFGLGTVGLAVAEGAKTA--GASRIIGIDIDSKKYETAKK  236 (378)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHH--TCSCEEEECSCTTHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence            5678899999986 467777778776  34 79999999988887765

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=93.28  E-value=0.65  Score=26.79  Aligned_cols=61  Identities=8%  Similarity=-0.060  Sum_probs=40.9

Q ss_pred             CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++|-.| |+|+++..+++.+. .+.+|+.++.+++.++...+.+....     ..++.++..|+.+
T Consensus         2 ~k~vlITG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~   63 (235)
T 3l77_A            2 MKVAVITG-ASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQ-----GVEVFYHHLDVSK   63 (235)
T ss_dssp             CCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----CCCEEEEECCTTC
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-----CCeEEEEEeccCC
Confidence            34566555 55677777766542 45689999999987777666654222     3467888888765

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=93.28  E-value=0.14  Score=31.85  Aligned_cols=45  Identities=18%  Similarity=0.181  Sum_probs=35.0

Q ss_pred             cCCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .+.++.+||-+|+| .|...+.+++..  +.+|++++.+++.++.+++
T Consensus       176 ~~~~g~~VlV~GaG~vG~~~~qlak~~--Ga~Vi~~~~~~~~~~~~~~  221 (360)
T 1piw_A          176 GCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMK  221 (360)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence            36788999999975 366677777776  4589999998887777765

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=93.26  E-value=0.75  Score=27.44  Aligned_cols=62  Identities=6%  Similarity=-0.008  Sum_probs=41.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+ ..+.+|+.++.+++..+...+.+....     ..++.++..|+.+
T Consensus        26 ~~k~~lVTG-as~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~   88 (277)
T 4fc7_A           26 RDKVAFITG-GGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGAT-----GRRCLPLSMDVRA   88 (277)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHH-----SSCEEEEECCTTC
T ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-----CCcEEEEEcCCCC
Confidence            355667666 4566777776654 346689999999877666655554322     2467788888765

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=93.26  E-value=0.27  Score=30.82  Aligned_cols=44  Identities=20%  Similarity=0.274  Sum_probs=34.2

Q ss_pred             CCCCCeEEEecCC-CChHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGSG-SGYLTACFADLVGSN-GEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~   59 (88)
                      +.++.+||-.|+| .|..++.+++..  + .+|++++.+++.++.+++
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~~~~  238 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSL--GAENVIVIAGSPNRLKLAEE  238 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHT--TBSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHc--CCceEEEEcCCHHHHHHHHH
Confidence            5678899999965 466677777775  4 489999999988887764

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=93.23  E-value=0.75  Score=27.34  Aligned_cols=62  Identities=13%  Similarity=-0.001  Sum_probs=42.1

Q ss_pred             CCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++|-.| |+|+++..+++.+ ..+.+|++++.++..++...+.+...+    ...++.++..|+.+
T Consensus        32 ~k~vlVTG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~   94 (279)
T 1xg5_A           32 DRLALVTG-ASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG----YPGTLIPYRCDLSN   94 (279)
T ss_dssp             TCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CSSEEEEEECCTTC
T ss_pred             CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcC----CCceEEEEEecCCC
Confidence            45666655 5677777777654 245689999999877776666555543    23567788888765

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=93.15  E-value=0.76  Score=27.20  Aligned_cols=62  Identities=11%  Similarity=0.004  Sum_probs=42.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhh-cCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQ-GNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.|++ |.++..+++.+ ..+.+|+.++.+++.++.+.+.+.. .+     ..++.++..|+.+
T Consensus         7 ~~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~~Dv~~   70 (265)
T 3lf2_A            7 SEAVAVVTGGS-SGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFP-----GARLFASVCDVLD   70 (265)
T ss_dssp             TTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHST-----TCCEEEEECCTTC
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-----CceEEEEeCCCCC
Confidence            45667766654 55666666554 2466899999999888777776655 33     3458888888765

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=93.15  E-value=0.63  Score=28.60  Aligned_cols=46  Identities=26%  Similarity=0.335  Sum_probs=34.0

Q ss_pred             CCCCCeEEEecCCCC-hHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          14 LKPGAKVLDIGSGSG-YLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G-~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      ..++.+|+-+|+|.+ .....+++.. ...+|+++|.+++-++.+++.
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~-~g~~Vi~~~~~~~r~~~~~~~  207 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNV-FGAKVIAVDINQDKLNLAKKI  207 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-SCCEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHh-CCCEEEEEECcHHHhhhhhhc
Confidence            578889999998754 4555555554 467999999999877777654

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=93.10  E-value=0.74  Score=27.29  Aligned_cols=63  Identities=16%  Similarity=0.155  Sum_probs=42.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+ ..+.+|+.++.+++.++...+.+....    ....+.++..|..+
T Consensus         9 ~~k~~lVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~D~~~   72 (267)
T 3t4x_A            9 KGKTALVTG-STAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQY----PDAILQPVVADLGT   72 (267)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHC----TTCEEEEEECCTTS
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC----CCceEEEEecCCCC
Confidence            456677666 4566677776654 246689999999988777666665443    23466777777654

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=93.09  E-value=0.51  Score=28.01  Aligned_cols=62  Identities=10%  Similarity=-0.006  Sum_probs=42.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|.++..+++.+ ..+.+|+.++.+++.++.+.+.+....     ..++.++..|+.+
T Consensus        19 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dv~~   81 (266)
T 4egf_A           19 DGKRALITG-ATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQF-----GTDVHTVAIDLAE   81 (266)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----CCCEEEEECCTTS
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-----CCcEEEEEecCCC
Confidence            355666555 4566677766654 246689999999988877766665422     2467888888775

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=93.02  E-value=0.25  Score=30.24  Aligned_cols=44  Identities=20%  Similarity=0.219  Sum_probs=33.4

Q ss_pred             CCCCCeEEEecC--CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGS--GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +.++++||..|+  |.|.....++...  +.+|+++|.+++.++.+++
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~  188 (333)
T 1v3u_A          143 VKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQ  188 (333)
T ss_dssp             CCSSCEEEEESTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEecCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh
Confidence            567889999997  4566666666664  5689999999988777743

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=93.02  E-value=0.52  Score=28.33  Aligned_cols=61  Identities=16%  Similarity=0.071  Sum_probs=41.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++++|-.|+ +|+++..+++.+ ..+.+|+.++.+++.++...+.+...      ..++.++..|+.+
T Consensus         7 ~gk~vlVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~   68 (280)
T 3tox_A            7 EGKIAIVTGA-SSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGG------GGEAAALAGDVGD   68 (280)
T ss_dssp             TTCEEEESST-TSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTT------TCCEEECCCCTTC
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEECCCCC
Confidence            4566666664 566666666654 24668999999998877776666543      3567788888765

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=92.96  E-value=0.46  Score=28.55  Aligned_cols=62  Identities=16%  Similarity=0.072  Sum_probs=40.9

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+ ..+.+|+.++.+++.++...+.+...+     ...+.++..|+.+
T Consensus        32 ~gk~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~d   94 (281)
T 4dry_A           32 EGRIALVTG-GGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRT-----GNIVRAVVCDVGD   94 (281)
T ss_dssp             --CEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----SSCEEEEECCTTC
T ss_pred             CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-----CCeEEEEEcCCCC
Confidence            455666655 5567777776654 246689999999988777766665433     2345777888765

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=92.95  E-value=0.78  Score=26.78  Aligned_cols=61  Identities=7%  Similarity=0.034  Sum_probs=41.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+. .+.+|+.++.++...+...+.+...+      .++.++..|+.+
T Consensus        12 ~~k~vlItG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~   73 (260)
T 3awd_A           12 DNRVAIVTG-GAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEG------HDVSSVVMDVTN   73 (260)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTC
T ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEecCCC
Confidence            456777666 56777777776542 35689999999877666655555433      357788888765

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=92.88  E-value=0.85  Score=27.05  Aligned_cols=61  Identities=13%  Similarity=-0.033  Sum_probs=42.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++++|-.| |+|+++..+++.+ ..+.+|++++.++...+...+.+...+      .++.++..|+.+
T Consensus        30 ~~k~vlITG-asggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~   91 (272)
T 1yb1_A           30 TGEIVLITG-AGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG------AKVHTFVVDCSN   91 (272)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTC
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcC------CeEEEEEeeCCC
Confidence            345677666 5677777777654 245689999999887776666665433      367788888765

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=92.84  E-value=0.73  Score=27.09  Aligned_cols=64  Identities=13%  Similarity=-0.038  Sum_probs=41.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++++|-.|++ |+++..+++.+. .+.+|+.++.+++.++.+.+.+.....   ...++.++..|+.+
T Consensus         6 ~~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~   70 (250)
T 3nyw_A            6 QKGLAIITGAS-QGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNK---HVQEPIVLPLDITD   70 (250)
T ss_dssp             CCCEEEEESTT-SHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCT---TSCCCEEEECCTTC
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcc---ccCcceEEeccCCC
Confidence            45566766654 566666655542 356899999999888777776654320   12567788888765

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=92.83  E-value=0.22  Score=30.57  Aligned_cols=43  Identities=23%  Similarity=0.231  Sum_probs=34.6

Q ss_pred             cCCCCCeEEEecC--CCChHHHHHHHHhCCCceEEEEeCCHHHHHHH
Q psy8023          13 NLKPGAKVLDIGS--GSGYLTACFADLVGSNGEVTAVELIPEVLQFT   57 (88)
Q Consensus        13 ~~~~~~~vlD~g~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a   57 (88)
                      .+.++++||-.|+  |.|.....+++..  +.+|++++.+++.++.+
T Consensus       146 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~  190 (336)
T 4b7c_A          146 QPKNGETVVISGAAGAVGSVAGQIARLK--GCRVVGIAGGAEKCRFL  190 (336)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHH
Confidence            3678899999997  4677777777775  55999999999888777

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=92.68  E-value=0.61  Score=27.84  Aligned_cols=61  Identities=15%  Similarity=0.027  Sum_probs=42.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+ ..+.+|+.++.+++.++...+.+...+      .++.++..|+.+
T Consensus        25 ~gk~~lVTG-as~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dv~d   86 (271)
T 4ibo_A           25 GGRTALVTG-SSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVG------HDAEAVAFDVTS   86 (271)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT------CCEEECCCCTTC
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEcCCCC
Confidence            455666655 5666777776654 346689999999988877777666543      467788888765

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=92.66  E-value=0.43  Score=29.73  Aligned_cols=45  Identities=22%  Similarity=0.233  Sum_probs=36.5

Q ss_pred             cCCCCCeEEEec--CCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPGAKVLDIG--SGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~~~vlD~g--~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .+.++.+||-.|  .|.|.....+++..  +.+|++++.+++.++.+++
T Consensus       160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~  206 (362)
T 2c0c_A          160 GLSEGKKVLVTAAAGGTGQFAMQLSKKA--KCHVIGTCSSDEKSAFLKS  206 (362)
T ss_dssp             CCCTTCEEEETTTTBTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHH
Confidence            367888999999  45788888888876  5589999999988877765

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=92.59  E-value=0.46  Score=29.34  Aligned_cols=46  Identities=24%  Similarity=0.414  Sum_probs=34.6

Q ss_pred             cCCCCCeEEEecCC--CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPGAKVLDIGSG--SGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~~~vlD~g~G--~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .+.++++||-.|+|  .|.....+++.. .+.+|+++|.+++.++.+++
T Consensus       167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~-~Ga~Vi~~~~~~~~~~~~~~  214 (347)
T 1jvb_A          167 SLDPTKTLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVREEAVEAAKR  214 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH
Confidence            36788899999987  555666666664 14589999999988887765

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=92.54  E-value=0.21  Score=30.87  Aligned_cols=44  Identities=20%  Similarity=0.154  Sum_probs=33.6

Q ss_pred             CCCCCeEEEecC--CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGS--GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +.++++||..|+  |.|.....+++..  +.+|+++|.+++..+.+++
T Consensus       167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~V~~~~~~~~~~~~~~~  212 (347)
T 2hcy_A          167 LMAGHWVAISGAAGGLGSLAVQYAKAM--GYRVLGIDGGEGKEELFRS  212 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECSTTHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHC--CCcEEEEcCCHHHHHHHHH
Confidence            567889999998  4666666677664  4589999998877776654

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=92.53  E-value=0.27  Score=30.27  Aligned_cols=44  Identities=18%  Similarity=0.146  Sum_probs=34.6

Q ss_pred             CCCCCeEEEecC--CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGS--GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +.++++||-.|+  |.|.....+++..  +.+|++++.+++.++.+++
T Consensus       153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~  198 (345)
T 2j3h_A          153 PKEGETVYVSAASGAVGQLVGQLAKMM--GCYVVGSAGSKEKVDLLKT  198 (345)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence            567889999996  4666777777765  4689999999988877763

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=92.47  E-value=0.58  Score=28.00  Aligned_cols=61  Identities=18%  Similarity=0.073  Sum_probs=41.5

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.|+ +|+++..+++.+ ..+.+|+.++.+++.++...+.+...+      .++.++..|+.+
T Consensus        31 ~gk~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~d   92 (276)
T 3r1i_A           31 SGKRALITGA-STGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVG------GKALPIRCDVTQ   92 (276)
T ss_dssp             TTCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT------CCCEEEECCTTC
T ss_pred             CCCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEEcCCCC
Confidence            4566776664 466666666654 246689999999877777766666543      457777888765

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=92.29  E-value=1  Score=26.52  Aligned_cols=63  Identities=6%  Similarity=-0.080  Sum_probs=40.7

Q ss_pred             CCCeEEEecCCCC-hHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSG-YLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G-~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.|++.+ +++..+++.+ ..+.+|+.++.++...+.+.+.....+     ..++.++..|+.+
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~   70 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLD-----RNDSIILPCDVTN   70 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSS-----SCCCEEEECCCSS
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcC-----CCCceEEeCCCCC
Confidence            4677888886532 2444544433 246689999988766666666655544     3468888888775

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=92.29  E-value=1.1  Score=26.76  Aligned_cols=64  Identities=13%  Similarity=0.026  Sum_probs=44.2

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+ ..+.+|+.+|.+++.++.+.+.+...+.   ...++.++..|+.+
T Consensus        10 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~---~~~~~~~~~~Dv~~   74 (281)
T 3svt_A           10 QDRTYLVTG-GGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGA---NGGAIRYEPTDITN   74 (281)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCC---SSCEEEEEECCTTS
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC---CCceEEEEeCCCCC
Confidence            456677666 4566667766654 2466899999999888877777765440   12378888888875

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.23  E-value=0.6  Score=30.35  Aligned_cols=54  Identities=17%  Similarity=0.259  Sum_probs=37.8

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGS-NGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++|+-+|  .|..+..+++.+.. +..|+.+|.+++.++.+.+.+   +        +..+.||+++
T Consensus         3 ~M~iiI~G--~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~---~--------~~~i~Gd~~~   57 (461)
T 4g65_A            3 AMKIIILG--AGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY---D--------LRVVNGHASH   57 (461)
T ss_dssp             CEEEEEEC--CSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS---S--------CEEEESCTTC
T ss_pred             cCEEEEEC--CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc---C--------cEEEEEcCCC
Confidence            35666555  46788888887743 457999999999888776543   2        4566777665

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=92.17  E-value=0.55  Score=28.69  Aligned_cols=45  Identities=22%  Similarity=0.302  Sum_probs=35.6

Q ss_pred             CCCCCeEEEec--CCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          14 LKPGAKVLDIG--SGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        14 ~~~~~~vlD~g--~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      +.++++||-.|  .|.|.....+++..  +.+|++++.+++.++.+++.
T Consensus       138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~  184 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGVGSLACQWAKAL--GAKLIGTVSSPEKAAHAKAL  184 (325)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc
Confidence            56788999988  34677777788876  45899999999888887753

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=92.14  E-value=1.1  Score=26.49  Aligned_cols=63  Identities=16%  Similarity=0.168  Sum_probs=41.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++++|-.| |+|+++..+++.+. .+.+|+.++.+++.++...+.+....    ...++.++..|+.+
T Consensus        12 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~   75 (267)
T 1iy8_A           12 TDRVVLITG-GGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETA----PDAEVLTTVADVSD   75 (267)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHC----TTCCEEEEECCTTS
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc----CCceEEEEEccCCC
Confidence            456677666 45677777766542 45689999999877766655554431    12457778888765

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=92.11  E-value=0.43  Score=25.38  Aligned_cols=41  Identities=17%  Similarity=0.120  Sum_probs=29.6

Q ss_pred             CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHH
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .++++-+|+  |.++..+++.+. .+.+|+++|.+++.++.+++
T Consensus         6 ~~~v~I~G~--G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~   47 (141)
T 3llv_A            6 RYEYIVIGS--EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED   47 (141)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECC--CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Confidence            357888887  557777766542 35589999999988776654

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=92.07  E-value=0.17  Score=30.77  Aligned_cols=43  Identities=19%  Similarity=0.101  Sum_probs=34.6

Q ss_pred             CCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +.++.+||-.|+| .|..++.+++..  +.+|++++ +++..+.+++
T Consensus       140 ~~~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~-~~~~~~~~~~  183 (315)
T 3goh_A          140 LTKQREVLIVGFGAVNNLLTQMLNNA--GYVVDLVS-ASLSQALAAK  183 (315)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHH--TCEEEEEC-SSCCHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEE-ChhhHHHHHH
Confidence            5678899999985 477778888876  45999999 8877777766

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=92.05  E-value=0.94  Score=26.57  Aligned_cols=60  Identities=13%  Similarity=-0.076  Sum_probs=39.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG   81 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (88)
                      +++++|-.| |+|+++..+++.+ ..+.+|+.++.+++.++...+.+...+     ..++.++..|+
T Consensus        11 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~D~   71 (252)
T 3f1l_A           11 NDRIILVTG-ASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEET-----GRQPQWFILDL   71 (252)
T ss_dssp             TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----SCCCEEEECCT
T ss_pred             CCCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-----CCCceEEEEec
Confidence            455677666 4566666766654 246689999999988777766665433     23556666776

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=91.95  E-value=1.1  Score=26.30  Aligned_cols=61  Identities=13%  Similarity=0.019  Sum_probs=40.5

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+. .+.+|+.++.+++.++...+.+...+      .++.++..|+.+
T Consensus         4 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~   65 (260)
T 2qq5_A            4 NGQVCVVTG-ASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLG------GQCVPVVCDSSQ   65 (260)
T ss_dssp             TTCEEEESS-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS------SEEEEEECCTTS
T ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcC------CceEEEECCCCC
Confidence            345666555 56677777766542 45689999999877766655554433      357777888765

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=91.94  E-value=0.62  Score=28.95  Aligned_cols=46  Identities=26%  Similarity=0.416  Sum_probs=33.8

Q ss_pred             cCCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .+.++.+||-.|+| .|..++.+++.. .+.+|+++|.+++-++.+++
T Consensus       183 ~~~~g~~VlV~GaG~vG~~avqlak~~-~Ga~Vi~~~~~~~~~~~~~~  229 (359)
T 1h2b_A          183 TLYPGAYVAIVGVGGLGHIAVQLLKVM-TPATVIALDVKEEKLKLAER  229 (359)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHH-CCCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Confidence            36788899999975 344555666665 14589999999988887765

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=91.75  E-value=0.17  Score=30.63  Aligned_cols=44  Identities=27%  Similarity=0.257  Sum_probs=34.7

Q ss_pred             CCCCCeEEEecC--CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGS--GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +.++.+|+-.|+  |.|.....+++..  +.+|++++.+++..+.+++
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~  168 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA  168 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh
Confidence            678889999997  4677777778775  4589999998877777654

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=91.75  E-value=1.1  Score=25.93  Aligned_cols=61  Identities=11%  Similarity=-0.024  Sum_probs=41.9

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+ ..+.+|++++.++...+...+.+...+      .++.++..|+.+
T Consensus        10 ~~~~vlVtG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~   71 (255)
T 1fmc_A           10 DGKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG------GQAFACRCDITS   71 (255)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTC
T ss_pred             CCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhC------CceEEEEcCCCC
Confidence            456666555 6788888887764 345689999999877766655555433      357777788764

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=91.67  E-value=0.44  Score=29.43  Aligned_cols=42  Identities=24%  Similarity=0.222  Sum_probs=32.4

Q ss_pred             CCCeEEEecCC-CChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023          16 PGAKVLDIGSG-SGYLTACFADLVGSNG-EVTAVELIPEVLQFTHY   59 (88)
Q Consensus        16 ~~~~vlD~g~G-~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~   59 (88)
                      ++.+||-+|+| .|...+.+++..  +. +|+++|.+++.++.+++
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~  210 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKAS--GAYPVIVSEPSDFRRELAKK  210 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence            78899999985 355666666664  45 89999999988887765

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=91.66  E-value=1.2  Score=26.18  Aligned_cols=61  Identities=11%  Similarity=0.150  Sum_probs=40.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.|+ +|+++..+++.+ ..+.+|+.++.+++.++...+.+...+      .++.++..|+.+
T Consensus         6 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~   67 (262)
T 1zem_A            6 NGKVCLVTGA-GGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG------VEARSYVCDVTS   67 (262)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT------SCEEEEECCTTC
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEecCCC
Confidence            4566776664 566677766654 245689999999887776666555433      357777778764

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=91.65  E-value=1.1  Score=26.63  Aligned_cols=60  Identities=8%  Similarity=-0.098  Sum_probs=40.1

Q ss_pred             CCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++|-.| |+|+++..+++.+ ..+.+|+.++.++...+...+.+...+      .++.++..|+.+
T Consensus        28 ~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~d   88 (270)
T 3ftp_A           28 KQVAIVTG-ASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAG------LEGRGAVLNVND   88 (270)
T ss_dssp             TCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHT------CCCEEEECCTTC
T ss_pred             CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEEeCCC
Confidence            44566555 6667777776654 246689999999988777766665543      345667777654

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=91.64  E-value=1.3  Score=26.30  Aligned_cols=61  Identities=16%  Similarity=0.142  Sum_probs=40.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCC------------HHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELI------------PEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      .++++|-.| |+|+++..+++.+ ..+.+|+.+|.+            ++.++...+.+...+      .++.++..|+.
T Consensus        12 ~gk~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~D~~   84 (278)
T 3sx2_A           12 TGKVAFITG-AARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG------SRIVARQADVR   84 (278)
T ss_dssp             TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT------CCEEEEECCTT
T ss_pred             CCCEEEEEC-CCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC------CeEEEEeCCCC
Confidence            456677666 5566666666654 246689999987            666666655555433      46788888876


Q ss_pred             c
Q psy8023          83 I   83 (88)
Q Consensus        83 ~   83 (88)
                      +
T Consensus        85 ~   85 (278)
T 3sx2_A           85 D   85 (278)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=91.63  E-value=1.3  Score=26.38  Aligned_cols=61  Identities=15%  Similarity=0.076  Sum_probs=40.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+. .+.+|+.++.+++.++...+.+...+      .++.++..|+.+
T Consensus        21 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dv~~   82 (277)
T 2rhc_B           21 DSEVALVTG-ATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG------VEADGRTCDVRS   82 (277)
T ss_dssp             TSCEEEEET-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEECCCCC
Confidence            345667666 45677777766542 45689999999877766655555433      356777777764

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=91.61  E-value=0.41  Score=29.34  Aligned_cols=44  Identities=23%  Similarity=0.289  Sum_probs=34.9

Q ss_pred             CCCCCeEEEecC--CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGS--GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +.++++||-.|+  |.|.....+++..  +.+|++++.+++.++.+++
T Consensus       146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~  191 (334)
T 3qwb_A          146 VKKGDYVLLFAAAGGVGLILNQLLKMK--GAHTIAVASTDEKLKIAKE  191 (334)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence            567889999983  4677777777775  5699999999988887766

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=91.61  E-value=1.2  Score=25.85  Aligned_cols=60  Identities=13%  Similarity=-0.004  Sum_probs=40.2

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG   81 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (88)
                      +++++|-.|+ +|+++..+++.+ ..+.+|+.++.++..++...+.+...+     ..+..++..|.
T Consensus        13 ~~k~vlITGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~d~   73 (247)
T 3i1j_A           13 KGRVILVTGA-ARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAG-----QPQPLIIALNL   73 (247)
T ss_dssp             TTCEEEESST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-----SCCCEEEECCT
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC-----CCCceEEEecc
Confidence            4556776664 567777776654 245689999999988888777776544     33455555554

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=91.60  E-value=1.3  Score=26.10  Aligned_cols=61  Identities=15%  Similarity=0.073  Sum_probs=40.9

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+ ..+.+|+.++.+++.++...+.+...+      .++.++..|+.+
T Consensus         8 ~~k~vlVTG-as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~   69 (260)
T 2ae2_A            8 EGCTALVTG-GSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG------FKVEASVCDLSS   69 (260)
T ss_dssp             TTCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CEEEEEECCTTC
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEcCCCC
Confidence            456677666 5677777776654 245689999999877766655554433      357777788765

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=91.59  E-value=1.2  Score=26.62  Aligned_cols=61  Identities=16%  Similarity=0.105  Sum_probs=40.3

Q ss_pred             CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++|-.| |+|+++..+++.+. .+.+|+.++.++..++...+.+....     ..++.++..|+.+
T Consensus        26 ~k~vlITG-asggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dl~~   87 (302)
T 1w6u_A           26 GKVAFITG-GGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-----GNKVHAIQCDVRD   87 (302)
T ss_dssp             TCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----SSCEEEEECCTTC
T ss_pred             CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-----CCceEEEEeCCCC
Confidence            45666665 56777777776542 35689999999877766555554321     2357788888765

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=91.58  E-value=1.3  Score=26.21  Aligned_cols=63  Identities=6%  Similarity=-0.093  Sum_probs=43.6

Q ss_pred             CCCeEEEecCCC-ChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGS-GYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~-G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--|++. -+++..+++.+ ..+.+|+.++.+++.++.+.+.+...+     ..++.++..|+.+
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~   69 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLN-----QPEAHLYQIDVQS   69 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGT-----CSSCEEEECCTTC
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-----CCcEEEEEccCCC
Confidence            577888888543 23445554433 246789999999988888887777655     4567788888765

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=91.57  E-value=1.5  Score=26.89  Aligned_cols=46  Identities=28%  Similarity=0.345  Sum_probs=33.6

Q ss_pred             CCCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          14 LKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        14 ~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      ..++.+|+-.|+|. |..++.+++..+ ...++++|.+++-++.+++.
T Consensus       158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G-~~~vi~~~~~~~k~~~a~~l  204 (346)
T 4a2c_A          158 GCENKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDISSEKLALAKSF  204 (346)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCcchHHHHHHHHcC-CcEEEEEechHHHHHHHHHc
Confidence            56788999998863 446666677652 34578999999888877763

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=91.55  E-value=1.4  Score=26.58  Aligned_cols=60  Identities=12%  Similarity=0.079  Sum_probs=38.9

Q ss_pred             CCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCC------------HHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELI------------PEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++|-.|++ ++++..+++.+ ..+.+|+.+|.+            ++.++...+.+...+      .++.++..|+.+
T Consensus        28 gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~  100 (299)
T 3t7c_A           28 GKVAFITGAA-RGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG------RRIIASQVDVRD  100 (299)
T ss_dssp             TCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT------CCEEEEECCTTC
T ss_pred             CCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcC------CceEEEECCCCC
Confidence            4566766654 55666666554 346789999987            666666655555533      467888888765

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=91.55  E-value=1.3  Score=26.36  Aligned_cols=61  Identities=16%  Similarity=0.103  Sum_probs=39.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCC----------------HHHHHHHHHhhhhcCCCCCCCcceEEee
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELI----------------PEVLQFTHYNIQQGNPELLPNIKFEPQT   78 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~----------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~   78 (88)
                      .++++|-.|++ +.++..+++.+ ..+.+|+.+|.+                ++.++...+.+...+      .++.++.
T Consensus        10 ~~k~~lVTGas-~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~   82 (286)
T 3uve_A           10 EGKVAFVTGAA-RGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN------RRIVTAE   82 (286)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT------CCEEEEE
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC------CceEEEE
Confidence            45667766655 55566665554 246789999887                566666555555433      4678888


Q ss_pred             CCccc
Q psy8023          79 GEGDI   83 (88)
Q Consensus        79 ~d~~~   83 (88)
                      .|+.+
T Consensus        83 ~Dv~~   87 (286)
T 3uve_A           83 VDVRD   87 (286)
T ss_dssp             CCTTC
T ss_pred             cCCCC
Confidence            88765

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=91.48  E-value=1.3  Score=26.23  Aligned_cols=61  Identities=10%  Similarity=0.016  Sum_probs=39.9

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCC------------HHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELI------------PEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      +++++|--|+ +|+++..+++.+ ..+.+|+.+|.+            ...++.+.+.+...+      .++.++..|+.
T Consensus         9 ~gk~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~D~~   81 (287)
T 3pxx_A            9 QDKVVLVTGG-ARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG------RKAYTAEVDVR   81 (287)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT------SCEEEEECCTT
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC------CceEEEEccCC
Confidence            4566776664 456666666654 246689999987            666666666555533      46788888876


Q ss_pred             c
Q psy8023          83 I   83 (88)
Q Consensus        83 ~   83 (88)
                      +
T Consensus        82 ~   82 (287)
T 3pxx_A           82 D   82 (287)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=91.48  E-value=1.9  Score=28.01  Aligned_cols=67  Identities=16%  Similarity=0.151  Sum_probs=46.3

Q ss_pred             HHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023           6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus         6 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +...+.....+.++|+-+|  .|.++..+++.+.+..++..+|.+++.++.+.+.+.          +..+++||+++.
T Consensus       224 ~~~~~g~~~~~~~~v~I~G--gG~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l~----------~~~Vi~GD~td~  290 (461)
T 4g65_A          224 VMSELQRLEKPYRRIMIVG--GGNIGASLAKRLEQTYSVKLIERNLQRAEKLSEELE----------NTIVFCGDAADQ  290 (461)
T ss_dssp             HHHHTTGGGSCCCEEEEEC--CSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHCT----------TSEEEESCTTCH
T ss_pred             HHHhhccccccccEEEEEc--chHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHCC----------CceEEeccccch
Confidence            3444433334456777766  456777888888777899999999977776665432          467889998863

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=91.40  E-value=0.53  Score=29.21  Aligned_cols=45  Identities=20%  Similarity=0.167  Sum_probs=34.2

Q ss_pred             cCCCCCeEEEecC--CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPGAKVLDIGS--GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~~~vlD~g~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .+.++++|+-.|+  |.|.....+++..  +.+|++++.+++.++.+++
T Consensus       167 ~~~~g~~vlV~GasggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~  213 (351)
T 1yb5_A          167 CVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ  213 (351)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred             CCCCcCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCChhHHHHHHH
Confidence            3567889999996  4566666777765  5689999999988776654

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=91.39  E-value=0.65  Score=27.79  Aligned_cols=61  Identities=18%  Similarity=0.146  Sum_probs=41.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+ ..+.+|+.++.+++..+.+.+.+...+      .++.++..|+.+
T Consensus        32 ~gk~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~   93 (275)
T 4imr_A           32 RGRTALVTG-SSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASG------GTAQELAGDLSE   93 (275)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTT------CCEEEEECCTTS
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC------CeEEEEEecCCC
Confidence            456666666 5566677766654 346689999998877776666665533      467788888765

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=91.32  E-value=1.4  Score=26.15  Aligned_cols=61  Identities=13%  Similarity=0.037  Sum_probs=40.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+. .+.+|+.++.+++.++...+.+...+      .++.++..|+.+
T Consensus        20 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~   81 (273)
T 1ae1_A           20 KGTTALVTG-GSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG------LNVEGSVCDLLS   81 (273)
T ss_dssp             TTCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTC
T ss_pred             CCCEEEEEC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEECCCCC
Confidence            456677666 46677777766542 45689999999887776655555433      356777777764

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=91.26  E-value=0.83  Score=27.98  Aligned_cols=45  Identities=22%  Similarity=0.248  Sum_probs=35.1

Q ss_pred             cCCCCCeEEEecC--CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPGAKVLDIGS--GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~~~vlD~g~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .+.++++|+-.|+  |.|.....++...  +.+|++++.+++.++.+++
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~  188 (333)
T 1wly_A          142 KVKPGDYVLIHAAAGGMGHIMVPWARHL--GATVIGTVSTEEKAETARK  188 (333)
T ss_dssp             CCCTTCEEEETTTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence            3567889999994  5777777777765  4689999999987777765

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=91.24  E-value=1.4  Score=25.81  Aligned_cols=61  Identities=15%  Similarity=0.031  Sum_probs=41.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++++|-.| |+|+++..+++.+. .+.+|+.++.+++.++...+.+...+      .++.++..|+.+
T Consensus         6 ~~k~~lVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dv~~   67 (247)
T 2jah_A            6 QGKVALITG-ASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAG------AKVHVLELDVAD   67 (247)
T ss_dssp             TTCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEECCCCC
Confidence            356677666 45667777766542 45689999999887776666555433      357777788765

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=91.24  E-value=1.5  Score=26.16  Aligned_cols=61  Identities=15%  Similarity=0.078  Sum_probs=40.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeC-------------CHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVEL-------------IPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG   81 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~-------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (88)
                      +++++|-.|+ +|+++..+++.+ ..+.+|+.+|.             +++.++...+.+...+      .++.++..|+
T Consensus        14 ~gk~~lVTGa-s~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dv   86 (280)
T 3pgx_A           14 QGRVAFITGA-ARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQG------RKALTRVLDV   86 (280)
T ss_dssp             TTCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT------CCEEEEECCT
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC------CeEEEEEcCC
Confidence            4566776665 456666666654 34668999987             6666776666665533      4677788887


Q ss_pred             cc
Q psy8023          82 DI   83 (88)
Q Consensus        82 ~~   83 (88)
                      .+
T Consensus        87 ~~   88 (280)
T 3pgx_A           87 RD   88 (280)
T ss_dssp             TC
T ss_pred             CC
Confidence            65

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=91.22  E-value=1.5  Score=26.25  Aligned_cols=62  Identities=5%  Similarity=0.021  Sum_probs=40.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeC-CHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVEL-IPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++++|-.| |+|+++..+++.+ ..+.+|+.++. ++..++...+.+....     ..++.++..|+.+
T Consensus        24 ~~k~~lVTG-as~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~d   87 (281)
T 3v2h_A           24 MTKTAVITG-STSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLS-----SGTVLHHPADMTK   87 (281)
T ss_dssp             TTCEEEEET-CSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTC-----SSCEEEECCCTTC
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhcc-----CCcEEEEeCCCCC
Confidence            345677666 4566666666654 24568999998 6666666666555433     3568888888765

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=91.11  E-value=0.5  Score=28.84  Aligned_cols=44  Identities=16%  Similarity=0.205  Sum_probs=33.9

Q ss_pred             CCCCCeEEEec--CCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIG--SGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g--~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +.++++||-.|  .|.|.....+++..  +.+|++++.+++.++.+++
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~  183 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK  183 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence            56788999998  45666666777765  4589999999988877765

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=91.02  E-value=0.31  Score=30.07  Aligned_cols=44  Identities=27%  Similarity=0.344  Sum_probs=35.3

Q ss_pred             CCCCCeEEEecC--CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGS--GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +.++.+||-.|+  |.|.....+++..  +.+|++++.+++..+.+++
T Consensus       157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~  202 (342)
T 4eye_A          157 LRAGETVLVLGAAGGIGTAAIQIAKGM--GAKVIAVVNRTAATEFVKS  202 (342)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh
Confidence            567889999996  4677888888876  5599999999887777765

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=91.00  E-value=1.5  Score=26.04  Aligned_cols=64  Identities=17%  Similarity=0.091  Sum_probs=41.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+. .+.+|+.++.+++.++...+.+...+.   ...++.++..|+.+
T Consensus         5 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~   69 (280)
T 1xkq_A            5 SNKTVIITG-SSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGV---SEKQVNSVVADVTT   69 (280)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC---CGGGEEEEECCTTS
T ss_pred             CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCcceEEEEecCCC
Confidence            345666555 56677777766542 456899999998877766665554330   01267888888765

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=90.65  E-value=1.3  Score=26.66  Aligned_cols=63  Identities=19%  Similarity=-0.001  Sum_probs=42.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCC-C---ceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGS-N---GEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~-~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.|+ +|+++..+++.+.. +   .+|+.++.+++.++.+.+.+....    ...++.++..|+.+
T Consensus        32 ~~k~~lVTGa-s~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dv~d   98 (287)
T 3rku_A           32 AKKTVLITGA-SAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEF----PNAKVHVAQLDITQ   98 (287)
T ss_dssp             TTCEEEEEST-TSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHC----TTCEEEEEECCTTC
T ss_pred             CCCEEEEecC-CChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhC----CCCeEEEEECCCCC
Confidence            3567777664 46666666655421 2   389999999988877777665532    23567888888765

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=90.60  E-value=1.9  Score=26.32  Aligned_cols=61  Identities=15%  Similarity=0.146  Sum_probs=38.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCC------------HHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELI------------PEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      +++++|-.| |+|+++..+++.+ ..+.+|+.+|.+            ++.++...+.+...+      .++.++..|+.
T Consensus        45 ~gk~~lVTG-as~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dv~  117 (317)
T 3oec_A           45 QGKVAFITG-AARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG------RRIIARQADVR  117 (317)
T ss_dssp             TTCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT------CCEEEEECCTT
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcC------CeEEEEECCCC
Confidence            345666555 4566666666654 246689999876            555665555555433      46778888876


Q ss_pred             c
Q psy8023          83 I   83 (88)
Q Consensus        83 ~   83 (88)
                      +
T Consensus       118 d  118 (317)
T 3oec_A          118 D  118 (317)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=90.44  E-value=0.85  Score=29.25  Aligned_cols=41  Identities=17%  Similarity=0.218  Sum_probs=28.8

Q ss_pred             CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHH
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~   59 (88)
                      ..+|+-+|+  |.++..+++.+. .+..|+.+|.+++.++.+++
T Consensus         4 ~~~viIiG~--Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~   45 (413)
T 3l9w_A            4 GMRVIIAGF--GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK   45 (413)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH
T ss_pred             CCeEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh
Confidence            456777776  556666655442 24579999999998887764

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=90.44  E-value=1.7  Score=25.59  Aligned_cols=63  Identities=14%  Similarity=-0.000  Sum_probs=40.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++++|-.| |+|+++..+++.+ ..+.+|+.++.+++..+...+.+....    ...++.++..|+.+
T Consensus         6 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~D~~~   69 (267)
T 2gdz_A            6 NGKVALVTG-AAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF----EPQKTLFIQCDVAD   69 (267)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS----CGGGEEEEECCTTS
T ss_pred             CCCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhc----CCCceEEEecCCCC
Confidence            455677666 5567777776654 245689999999876665554443321    13467788888765

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=90.44  E-value=1.6  Score=25.22  Aligned_cols=62  Identities=13%  Similarity=0.009  Sum_probs=39.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++++-.| |+|+++..+++.+ ..+.+|+.++.++...+...+.+....     ..++.++..|+.+
T Consensus         6 ~~~~vlVtG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~   68 (248)
T 2pnf_A            6 QGKVSLVTG-STRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKY-----GVKAHGVEMNLLS   68 (248)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH-----CCCEEEEECCTTC
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhc-----CCceEEEEccCCC
Confidence            355666555 5677777777654 245689999999877766555443311     1356777777654

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=90.40  E-value=0.65  Score=28.80  Aligned_cols=44  Identities=27%  Similarity=0.191  Sum_probs=34.5

Q ss_pred             CCCCCeEEEec--CCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIG--SGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g--~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +.++++||-.|  .|.|.....+++..  +.+|++++.+++.++.+++
T Consensus       165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~  210 (353)
T 4dup_A          165 LTEGESVLIHGGTSGIGTTAIQLARAF--GAEVYATAGSTGKCEACER  210 (353)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh
Confidence            56788999885  34677777777775  5689999999988887776

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=90.38  E-value=0.67  Score=28.74  Aligned_cols=44  Identities=16%  Similarity=0.133  Sum_probs=33.4

Q ss_pred             CCCCCeEEEecC--CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGS--GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +.++++|+-.|+  |.|.....++...  +.+|++++.+++.++.+++
T Consensus       160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~  205 (354)
T 2j8z_A          160 VQAGDYVLIHAGLSGVGTAAIQLTRMA--GAIPLVTAGSQKKLQMAEK  205 (354)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence            567889999983  4666666667664  5689999999988877754

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=90.29  E-value=1.6  Score=25.32  Aligned_cols=41  Identities=10%  Similarity=-0.147  Sum_probs=29.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTH   58 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~   58 (88)
                      ..++++-+|+  |.++..+++.+...+.|+.+|.+++.++.+.
T Consensus         8 ~~~~viI~G~--G~~G~~la~~L~~~g~v~vid~~~~~~~~~~   48 (234)
T 2aef_A            8 KSRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLR   48 (234)
T ss_dssp             --CEEEEESC--CHHHHHHHHHSTTSEEEEEESCGGGHHHHHH
T ss_pred             CCCEEEEECC--ChHHHHHHHHHHhCCeEEEEECCHHHHHHHh
Confidence            4457888776  7888888888754333999999987766554

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=90.27  E-value=1.8  Score=25.61  Aligned_cols=61  Identities=18%  Similarity=0.042  Sum_probs=39.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeC-CHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVEL-IPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.|+ +|+++..+++.+ ..+.+|+.++- ++...+...+..+..+      .++.++..|+.+
T Consensus        28 ~~k~vlITGa-s~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~~D~~~   90 (271)
T 4iin_A           28 TGKNVLITGA-SKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKG------YKAAVIKFDAAS   90 (271)
T ss_dssp             SCCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT------CCEEEEECCTTC
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC------CceEEEECCCCC
Confidence            4556666554 566666666654 24568999988 5666666666665533      467788888765

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=90.14  E-value=1.8  Score=25.38  Aligned_cols=62  Identities=11%  Similarity=0.075  Sum_probs=41.3

Q ss_pred             CCeEEEecCCCChHHHHHHHHhC----CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVG----SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~----~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++|-.| |+|+++..+++.+.    .+.+|+.++.+++.++...+.+....    ...++.++..|+.+
T Consensus         6 ~k~~lVTG-as~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dv~~   71 (259)
T 1oaa_A            6 CAVCVLTG-ASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQ----PDLKVVLAAADLGT   71 (259)
T ss_dssp             SEEEEESS-CSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHC----TTSEEEEEECCTTS
T ss_pred             CcEEEEeC-CCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhC----CCCeEEEEecCCCC
Confidence            44555555 56777777777654    36799999999887776665554421    13467788888765

>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28

Probab=90.04  E-value=1.1  Score=27.41  Aligned_cols=46  Identities=13%  Similarity=0.187  Sum_probs=34.1

Q ss_pred             HHHHHhhcCCC-CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHH
Q psy8023           6 ALELLKDNLKP-GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF   56 (88)
Q Consensus         6 ~~~~~~~~~~~-~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~   56 (88)
                      ++..+...+++ ..+.+|..+|.|.+...+.    + .+++.-|++++.+..
T Consensus        24 l~~~i~~~lp~~~~~yvEpF~GggaV~~~~~----~-~~~i~ND~n~~Lin~   70 (284)
T 2dpm_A           24 LLPVIRELIPKTYNRYFEPFVGGGALFFDLA----P-KDAVINDFNAELINC   70 (284)
T ss_dssp             GHHHHHHHSCSSCSCEEETTCTTCHHHHHHC----C-SEEEEEESCHHHHHH
T ss_pred             HHHHHHHHhccccCEEEeecCCccHHHHhhh----c-cceeeeecchHHHHH
Confidence            45556655665 4689999999999866541    2 479999999987653

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=89.97  E-value=1.9  Score=25.35  Aligned_cols=61  Identities=10%  Similarity=0.086  Sum_probs=39.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhc-CCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQG-NPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+. .+.+|+.++.+++.++.+.+.+... +      .++.++..|+.+
T Consensus         6 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~------~~~~~~~~D~~~   68 (263)
T 3ai3_A            6 SGKVAVITG-SSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFG------VRVLEVAVDVAT   68 (263)
T ss_dssp             TTCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC------CCEEEEECCTTS
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcC------CceEEEEcCCCC
Confidence            456677666 45677777766542 4568999999987766655555432 2      356777777765

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=89.82  E-value=0.76  Score=33.91  Aligned_cols=45  Identities=24%  Similarity=0.213  Sum_probs=35.0

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      ..+++|+.||.|+++..+-+.. -.-.+.++|+++.+++.-+.|+.
T Consensus       851 ~l~viDLFsG~GGlslGfe~AG-~~~vv~avEid~~A~~ty~~N~p  895 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQAG-ISETLWAIEMWDPAAQAFRLNNP  895 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHTT-SEEEEEEECCSHHHHHHHHHHCT
T ss_pred             CceEEecccCccHHHHHHHHCC-CCceEEEEECCHHHHHHHHHhCC
Confidence            4579999999999999887652 11258899999998887776653

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=89.81  E-value=0.38  Score=31.32  Aligned_cols=39  Identities=15%  Similarity=0.216  Sum_probs=25.9

Q ss_pred             eEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHH
Q psy8023          19 KVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +|--+  |.|+.+..++..+. .+.+|+|+|++++.++..++
T Consensus        23 ~IaVi--GlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~   62 (444)
T 3vtf_A           23 SLSVL--GLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRA   62 (444)
T ss_dssp             EEEEE--CCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHT
T ss_pred             EEEEE--ccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHC
Confidence            45555  55666666555442 24589999999988776543

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=89.49  E-value=0.73  Score=28.60  Aligned_cols=43  Identities=23%  Similarity=0.232  Sum_probs=32.4

Q ss_pred             CC-CCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy8023          14 LK-PGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTH   58 (88)
Q Consensus        14 ~~-~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~   58 (88)
                      +. ++.+|+-+|+| .|..++.+++..  +.+|++++.+++..+.++
T Consensus       177 ~~~~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~~~~~~~~~~~  221 (357)
T 2cf5_A          177 LKQPGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSNKKREEAL  221 (357)
T ss_dssp             TTSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSTTHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHH
Confidence            55 78899999865 455666677776  458999999987777666

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=89.42  E-value=2.3  Score=25.65  Aligned_cols=64  Identities=19%  Similarity=0.162  Sum_probs=41.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+. .+.+|+.++.+++.++...+.+...+.   ...++.++..|+.+
T Consensus        25 ~~k~vlVTG-as~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~---~~~~~~~~~~Dv~d   89 (297)
T 1xhl_A           25 SGKSVIITG-SSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGV---PAEKINAVVADVTE   89 (297)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC---CGGGEEEEECCTTS
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC---CCceEEEEecCCCC
Confidence            345666555 56777777776542 466899999998877766665554330   11267888888765

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=89.41  E-value=2.2  Score=25.46  Aligned_cols=61  Identities=8%  Similarity=-0.049  Sum_probs=40.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeC-CHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVEL-IPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++++|-.| |+|+++..+++.+ ..+.+|+.++. +++.++...+.+...+      .++.++..|+.+
T Consensus        28 ~~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dv~d   90 (280)
T 4da9_A           28 ARPVAIVTG-GRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLG------ARVIFLRADLAD   90 (280)
T ss_dssp             CCCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTT------CCEEEEECCTTS
T ss_pred             CCCEEEEec-CCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcC------CcEEEEEecCCC
Confidence            345666666 5566666666654 24568999995 7766666666665533      467888888875

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=89.37  E-value=2.1  Score=25.08  Aligned_cols=61  Identities=10%  Similarity=-0.001  Sum_probs=39.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+. .+.+|+.++.+++.++...+.+...+      .++.++..|+.+
T Consensus        13 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~   74 (260)
T 2zat_A           13 ENKVALVTA-STDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEG------LSVTGTVCHVGK   74 (260)
T ss_dssp             TTCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTC
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEccCCC
Confidence            355666555 56777777776542 35689999999877766555554433      356667777654

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=89.35  E-value=2.2  Score=25.31  Aligned_cols=61  Identities=15%  Similarity=0.131  Sum_probs=39.2

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeC-------------CHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVEL-------------IPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG   81 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~-------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (88)
                      +++++|-.|+ +|+++..+++.+ ..+.+|+.+|.             +++.++...+.....+      .++.++..|+
T Consensus        10 ~~k~~lVTGa-s~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~D~   82 (277)
T 3tsc_A           10 EGRVAFITGA-ARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN------RRIVAAVVDT   82 (277)
T ss_dssp             TTCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT------CCEEEEECCT
T ss_pred             CCCEEEEECC-ccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC------CeEEEEECCC
Confidence            4566776664 456666666543 24668999988             5666666655555433      4677777887


Q ss_pred             cc
Q psy8023          82 DI   83 (88)
Q Consensus        82 ~~   83 (88)
                      .+
T Consensus        83 ~~   84 (277)
T 3tsc_A           83 RD   84 (277)
T ss_dssp             TC
T ss_pred             CC
Confidence            65

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=89.31  E-value=1.5  Score=25.49  Aligned_cols=61  Identities=16%  Similarity=0.071  Sum_probs=39.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCC-HHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELI-PEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+. .+.+|+.++.+ +..++...+.+...+      .++.++..|+.+
T Consensus         6 ~~k~vlVTG-asggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~~D~~~   68 (258)
T 3afn_B            6 KGKRVLITG-SSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADG------GDAAFFAADLAT   68 (258)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTT------CEEEEEECCTTS
T ss_pred             CCCEEEEeC-CCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcC------CceEEEECCCCC
Confidence            345677555 56777887777642 35689999887 555555544444322      467778888765

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=89.29  E-value=2.2  Score=25.20  Aligned_cols=63  Identities=10%  Similarity=-0.060  Sum_probs=40.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeC-CHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVEL-IPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +++++|-.| |+|+++..+++.+. .+.+|+.++. ++..++...+.+....     ..++.++..|+.+.
T Consensus        10 ~~k~~lVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~   74 (276)
T 1mxh_A           10 ECPAAVITG-GARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAAR-----AGSAVLCKGDLSLS   74 (276)
T ss_dssp             -CCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-----TTCEEEEECCCSSS
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhc-----CCceEEEeccCCCc
Confidence            345666555 56777777776542 4568999999 8877766655554431     23577778887653

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=89.18  E-value=2.2  Score=25.00  Aligned_cols=61  Identities=11%  Similarity=0.091  Sum_probs=40.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|.++..+++.+ ..+.+|+.++.++..++...+.+...+      .++.++..|+.+
T Consensus        13 ~~k~vlITG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~   74 (266)
T 1xq1_A           13 KAKTVLVTG-GTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG------FQVTGSVCDASL   74 (266)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTS
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeeEEEECCCCC
Confidence            445666555 5677777777654 245689999999877766655554433      357777777764

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=89.00  E-value=2.4  Score=25.26  Aligned_cols=60  Identities=15%  Similarity=-0.000  Sum_probs=38.5

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|.++..+++.+. .+.+|+.++.+++.++...+.+...       .++.++..|+.+
T Consensus        28 ~~k~vlVTG-as~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~-------~~~~~~~~Dv~d   88 (276)
T 2b4q_A           28 AGRIALVTG-GSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAY-------GDCQAIPADLSS   88 (276)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTS-------SCEEECCCCTTS
T ss_pred             CCCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CceEEEEeeCCC
Confidence            355667666 55777777766542 4568999999987766555544321       256677777654

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=88.87  E-value=2.4  Score=24.99  Aligned_cols=61  Identities=8%  Similarity=-0.072  Sum_probs=38.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEE-eCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAV-ELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~-D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.|+ +|+++..+++.+ ..+.+|+.+ +.++...+...+.+...+      .++.++..|+.+
T Consensus         7 ~~k~vlVTGa-s~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~   69 (259)
T 3edm_A            7 TNRTIVVAGA-GRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG------RSALAIKADLTN   69 (259)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT------SCCEEEECCTTC
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC------CceEEEEcCCCC
Confidence            4567776664 455666666654 235678887 666666666666555433      457777788765

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=88.86  E-value=2.4  Score=25.10  Aligned_cols=61  Identities=15%  Similarity=0.015  Sum_probs=39.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhh-hhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNI-QQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+. .+.+|+.++.++..++...+.+ ...+      .++.++..|+.+
T Consensus        20 ~~k~~lVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~------~~~~~~~~Dl~~   82 (267)
T 1vl8_A           20 RGRVALVTG-GSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG------VETMAFRCDVSN   82 (267)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC------CCEEEEECCTTC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC------CeEEEEEcCCCC
Confidence            345666665 56777777766542 4568999999987766655544 2222      356677777764

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=88.85  E-value=0.86  Score=29.32  Aligned_cols=45  Identities=24%  Similarity=0.270  Sum_probs=35.8

Q ss_pred             cCCCCCeEEEecC--CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPGAKVLDIGS--GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~~~vlD~g~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .+.++.+|+-+|+  |.|..++.+++..  +.++++++.+++-++.+++
T Consensus       225 ~~~~g~~VlV~GasG~vG~~avqlak~~--Ga~vi~~~~~~~~~~~~~~  271 (456)
T 3krt_A          225 GMKQGDNVLIWGASGGLGSYATQFALAG--GANPICVVSSPQKAEICRA  271 (456)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHh
Confidence            3567889999996  4677778888876  5689999999988888865

>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*

Probab=88.83  E-value=0.83  Score=27.74  Aligned_cols=45  Identities=13%  Similarity=0.183  Sum_probs=34.3

Q ss_pred             HHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHH
Q psy8023           6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ   55 (88)
Q Consensus         6 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~   55 (88)
                      ++..+...+++..+.+|..+|.|.+...+.     ..+++.-|++++.+.
T Consensus        17 l~~~i~~~~p~~~~yvEpF~Ggg~V~~~~~-----~~~~i~ND~n~~lin   61 (278)
T 2g1p_A           17 LLDDIKRHLPKGECLVEPFVGAGSVFLNTD-----FSRYILADINSDLIS   61 (278)
T ss_dssp             GHHHHHHHCCCCSEEEETTCTTCHHHHTCC-----CSEEEEEESCHHHHH
T ss_pred             HHHHHHHhccccCeEEeeccCccHHHHhhc-----ccceEEEeccHHHHH
Confidence            456666666677899999999999865431     247999999998764

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=88.73  E-value=0.37  Score=29.71  Aligned_cols=44  Identities=23%  Similarity=0.323  Sum_probs=32.7

Q ss_pred             CCCCCeEEEecCC-CChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHh
Q psy8023          14 LKPGAKVLDIGSG-SGYLTACFADLVGSNG-EVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~   60 (88)
                      + ++.+||-.|+| .|...+.+++..  +. +|++++.+++.++.+++.
T Consensus       163 ~-~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~l  208 (343)
T 2dq4_A          163 V-SGKSVLITGAGPIGLMAAMVVRAS--GAGPILVSDPNPYRLAFARPY  208 (343)
T ss_dssp             C-TTSCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHGGGTTT
T ss_pred             C-CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh
Confidence            5 78899999974 355666667664  45 899999998877766553

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=88.55  E-value=2.6  Score=25.11  Aligned_cols=60  Identities=12%  Similarity=0.037  Sum_probs=40.1

Q ss_pred             CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++|-.| |+|.++..+++.+. .+.+|+.++-++..++...+.+...+      .++.++..|+.+
T Consensus        44 ~k~vlITG-asggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~d  104 (285)
T 2c07_A           44 NKVALVTG-AGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG------YESSGYAGDVSK  104 (285)
T ss_dssp             SCEEEEES-TTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT------CCEEEEECCTTC
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC------CceeEEECCCCC
Confidence            34566555 56788888887764 35689888888877666655554432      357777788765

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=88.55  E-value=2.5  Score=24.89  Aligned_cols=61  Identities=11%  Similarity=-0.068  Sum_probs=40.5

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEE-eCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAV-ELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~-D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+. .+.+|+.+ +.++...+...+.+...+      .++.++..|+.+
T Consensus         3 ~~k~vlVTG-as~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~   65 (258)
T 3oid_A            3 QNKCALVTG-SSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLG------VKVLVVKANVGQ   65 (258)
T ss_dssp             CCCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT------CCEEEEECCTTC
T ss_pred             CCCEEEEec-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC------CcEEEEEcCCCC
Confidence            455666555 55677777766542 45678776 788877777666665533      467888888765

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=88.54  E-value=2.4  Score=24.70  Aligned_cols=67  Identities=15%  Similarity=0.046  Sum_probs=38.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCC-CCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPEL-LPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+ ..+.+|+.++.++...+...+.+...+... ....++.++..|+.+
T Consensus         6 ~~k~vlITG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~   74 (264)
T 2pd6_A            6 RSALALVTG-AGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSE   74 (264)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTS
T ss_pred             CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCC
Confidence            345666555 5667777776654 235689999999877665555443221000 011457788888765

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=88.36  E-value=2.7  Score=24.98  Aligned_cols=61  Identities=10%  Similarity=0.040  Sum_probs=39.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCC------------HHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELI------------PEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      +++++|-.|+ +|+++..+++.+ ..+.+|+.+|.+            .+.++...+.....+      .++.++..|+.
T Consensus         9 ~~k~~lVTGa-s~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dv~   81 (281)
T 3s55_A            9 EGKTALITGG-ARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTG------RRCISAKVDVK   81 (281)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTT------CCEEEEECCTT
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcC------CeEEEEeCCCC
Confidence            4567776665 466666666654 246689999986            555555555555433      46778888876


Q ss_pred             c
Q psy8023          83 I   83 (88)
Q Consensus        83 ~   83 (88)
                      +
T Consensus        82 ~   82 (281)
T 3s55_A           82 D   82 (281)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=88.34  E-value=1.4  Score=24.49  Aligned_cols=41  Identities=22%  Similarity=0.161  Sum_probs=28.1

Q ss_pred             CCeEEEecCCCChHHHHHHHHhC-C-CceEEEEeCCHHHHHHHHH
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVG-S-NGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~-~-~~~v~~~D~~~~~~~~a~~   59 (88)
                      +++|+-+|+  |.++..+++.+. . +.+|+++|.+++.++.+++
T Consensus        39 ~~~v~IiG~--G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~   81 (183)
T 3c85_A           39 HAQVLILGM--GRIGTGAYDELRARYGKISLGIEIREEAAQQHRS   81 (183)
T ss_dssp             TCSEEEECC--SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH
T ss_pred             CCcEEEECC--CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH
Confidence            457888875  666666665442 2 3479999999987776654

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=88.32  E-value=2.7  Score=24.96  Aligned_cols=61  Identities=10%  Similarity=-0.076  Sum_probs=39.9

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeC-CHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVEL-IPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+ ..+.+|+.++. ++...+...+.+...+      .++.++..|+.+
T Consensus        27 ~~k~vlVTG-as~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~D~~d   89 (269)
T 4dmm_A           27 TDRIALVTG-ASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAG------GEAFAVKADVSQ   89 (269)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT------CCEEEEECCTTS
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC------CcEEEEECCCCC
Confidence            455666555 5566777776654 24568888887 6666666666665543      467788888765

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=88.29  E-value=2.5  Score=24.61  Aligned_cols=61  Identities=15%  Similarity=0.025  Sum_probs=39.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeC-CHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVEL-IPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|.++..+++.+. .+.+|+.++. ++...+...+.+...+      .++.++..|+.+
T Consensus         6 ~~k~vlITG-asggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~------~~~~~~~~D~~~   68 (261)
T 1gee_A            6 EGKVVVITG-SSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG------GEAIAVKGDVTV   68 (261)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT------CEEEEEECCTTS
T ss_pred             CCCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcC------CceEEEECCCCC
Confidence            345666555 56777777776542 3568999998 7766665555554432      357777777764

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=88.26  E-value=3.5  Score=26.24  Aligned_cols=58  Identities=24%  Similarity=0.213  Sum_probs=37.5

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCC----ceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSN----GEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~----~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      ++|+-+|+  |.++..+++.+...    .+++..|.+++..+...+.+...+     ..++..+..|+.
T Consensus         2 ~kVlIiGa--GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-----~~~~~~~~~D~~   63 (405)
T 4ina_A            2 AKVLQIGA--GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-----YGEIDITTVDAD   63 (405)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-----CCCCEEEECCTT
T ss_pred             CEEEEECC--CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-----CCceEEEEecCC
Confidence            36778887  57777777655332    389999999987776665554422     234556666654

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=88.21  E-value=2.7  Score=24.90  Aligned_cols=57  Identities=18%  Similarity=0.107  Sum_probs=37.0

Q ss_pred             CCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++|-.| |+|+++..+++.+ ..+.+|+.++.+++.++...+.+   +      .++.++..|+.+
T Consensus        30 ~k~vlVTG-as~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~---~------~~~~~~~~Dl~~   87 (281)
T 3ppi_A           30 GASAIVSG-GAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL---G------NRAEFVSTNVTS   87 (281)
T ss_dssp             TEEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C------TTEEEEECCTTC
T ss_pred             CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---C------CceEEEEcCCCC
Confidence            45666666 5566667766654 24668999999987766655443   2      246777777664

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=88.17  E-value=2.6  Score=24.65  Aligned_cols=59  Identities=10%  Similarity=-0.083  Sum_probs=38.5

Q ss_pred             CeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++|-.| |+|.++..+++.+. .+.+|+.++.+++..+...+.+...+      .++.++..|+.+
T Consensus         3 k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~   62 (256)
T 1geg_A            3 KVALVTG-AGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG------GHAVAVKVDVSD   62 (256)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTS
T ss_pred             CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEecCCC
Confidence            4556555 55677777766542 35689999999877766655554433      356777777765

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=88.14  E-value=1.5  Score=27.08  Aligned_cols=42  Identities=21%  Similarity=0.271  Sum_probs=32.7

Q ss_pred             CCCeEEEec-CC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          16 PGAKVLDIG-SG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        16 ~~~~vlD~g-~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      ++.+||-.| +| .|..+..+++..  +.+|++++.+++.++.+++
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~  193 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAY--GLRVITTASRNETIEWTKK  193 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEECCSHHHHHHHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh
Confidence            788898884 33 566777777765  5599999999988888776

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=88.13  E-value=2.6  Score=24.65  Aligned_cols=61  Identities=10%  Similarity=-0.028  Sum_probs=40.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeC-CHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVEL-IPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+. .+.+|+.++. ++...+...+.+...+      .++.++..|+.+
T Consensus        20 ~~k~vlItG-asggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~------~~~~~~~~D~~~   82 (274)
T 1ja9_A           20 AGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG------AQGVAIQADISK   82 (274)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT------CCEEEEECCTTS
T ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcC------CcEEEEEecCCC
Confidence            345677555 56788888777642 3568999988 7766665555554433      357777888765

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=88.10  E-value=2.9  Score=25.09  Aligned_cols=61  Identities=8%  Similarity=-0.105  Sum_probs=40.9

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEe-CCHHHHHHHHHhhh-hcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVE-LIPEVLQFTHYNIQ-QGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D-~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|.++..+++.+ ..+.+|+.++ .+++.++.+.+.+. ..+      .++.++..|+.+
T Consensus         8 ~~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~------~~~~~~~~Dl~~   71 (291)
T 1e7w_A            8 TVPVALVTG-AAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP------NSAITVQADLSN   71 (291)
T ss_dssp             CCCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST------TCEEEEECCCSS
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcC------CeeEEEEeecCC
Confidence            345666555 5566777777654 2456899999 99877776666554 322      467788888765

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=88.06  E-value=1.6  Score=22.00  Aligned_cols=40  Identities=20%  Similarity=0.190  Sum_probs=28.5

Q ss_pred             CCeEEEecCCCChHHHHHHHHhC-CC-ceEEEEeCCHHHHHHHH
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVG-SN-GEVTAVELIPEVLQFTH   58 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~-~~-~~v~~~D~~~~~~~~a~   58 (88)
                      .++|+-+|+  |.++..+++.+. .+ .+++.+|.+++..+...
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~   46 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN   46 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Confidence            457888887  777777666542 23 58999999997766554

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=88.04  E-value=2.6  Score=24.49  Aligned_cols=60  Identities=12%  Similarity=-0.059  Sum_probs=38.9

Q ss_pred             CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeC-CHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVEL-IPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++|-.| |+|+++..+++.+. .+.+|+.++. +++..+...+.+...+      .++.++..|+.+
T Consensus         4 ~k~vlVTG-as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~~D~~~   65 (246)
T 2uvd_A            4 GKVALVTG-ASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLG------SDAIAVRADVAN   65 (246)
T ss_dssp             TCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT------CCEEEEECCTTC
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC------CcEEEEEcCCCC
Confidence            45666555 56777777776542 3568999988 7776666555554433      356777778765

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=88.02  E-value=2.4  Score=25.36  Aligned_cols=61  Identities=16%  Similarity=0.139  Sum_probs=37.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHH-------HHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPE-------VLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.|++ |.++..+++.+ ..+.+|+.++.++.       .++...+.+...+      .++.++..|+.+
T Consensus         8 ~~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~   76 (285)
T 3sc4_A            8 RGKTMFISGGS-RGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAG------GQALPIVGDIRD   76 (285)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHT------SEEEEEECCTTS
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcC------CcEEEEECCCCC
Confidence            45667766654 56666666654 34668999988764       2444444444333      467778888765

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=87.99  E-value=0.81  Score=28.13  Aligned_cols=52  Identities=10%  Similarity=-0.137  Sum_probs=34.5

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..+++-+|+  |..+..+++.+...++++.+|.+++.++ +++    .+        +.++.+|+.+
T Consensus       115 ~~~viI~G~--G~~g~~l~~~L~~~g~v~vid~~~~~~~-~~~----~~--------~~~i~gd~~~  166 (336)
T 1lnq_A          115 SRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKK-VLR----SG--------ANFVHGDPTR  166 (336)
T ss_dssp             -CEEEEESC--CHHHHHHHTTGGGSCEEEEESCGGGHHH-HHH----TT--------CEEEESCTTS
T ss_pred             cCCEEEECC--cHHHHHHHHHHHhCCcEEEEeCChhhhh-HHh----CC--------cEEEEeCCCC
Confidence            346777665  7888888887643333999999998777 543    22        4566666654

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=87.98  E-value=2.8  Score=24.78  Aligned_cols=64  Identities=16%  Similarity=0.066  Sum_probs=40.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++++|-.| |+|+++..+++.+ ..+.+|+.++.+++.++...+.+.....   ...++.++..|+.+
T Consensus         5 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~   69 (278)
T 1spx_A            5 AEKVAIITG-SSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGV---SEQNVNSVVADVTT   69 (278)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC---CGGGEEEEECCTTS
T ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccc---CCCceeEEecccCC
Confidence            345666555 5577777776654 2456899999998777666555421110   13467788888765

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=87.94  E-value=2.9  Score=24.90  Aligned_cols=60  Identities=15%  Similarity=0.057  Sum_probs=36.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.|+ +|+++..+++.+ ..+.+|+.++-++..-+. .+.+...      ..++.++..|+.+
T Consensus        30 ~gk~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~-~~~~~~~------~~~~~~~~~Dv~d   90 (273)
T 3uf0_A           30 AGRTAVVTGA-GSGIGRAIAHGYARAGAHVLAWGRTDGVKEV-ADEIADG------GGSAEAVVADLAD   90 (273)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSTHHHHH-HHHHHTT------TCEEEEEECCTTC
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCHHHHHHH-HHHHHhc------CCcEEEEEecCCC
Confidence            4566776664 566666666654 246689999965543333 3333332      3467788888765

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=87.91  E-value=1.8  Score=22.51  Aligned_cols=41  Identities=10%  Similarity=0.216  Sum_probs=27.9

Q ss_pred             CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHH
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +++|+-+|+  |.++..+++.+. .+.+|+.+|.+++.++...+
T Consensus         4 ~m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~   45 (140)
T 1lss_A            4 GMYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA   45 (140)
T ss_dssp             -CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence            457887765  677777666542 24579999999987765543

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=87.90  E-value=2.2  Score=26.05  Aligned_cols=60  Identities=13%  Similarity=0.030  Sum_probs=37.9

Q ss_pred             CCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCC----------HHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELI----------PEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++|-.| |+|+++..+++.+ ..+.+|+.+|.+          ....+...+.+...+      .++.++..|+.+
T Consensus        27 gk~vlVTG-as~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dv~d   97 (322)
T 3qlj_A           27 GRVVIVTG-AGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAG------GEAVADGSNVAD   97 (322)
T ss_dssp             TCEEEETT-TTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTT------CEEEEECCCTTS
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcC------CcEEEEECCCCC
Confidence            45666655 5567777776654 246689999876          455555555555433      467777777765

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=87.79  E-value=1.8  Score=26.73  Aligned_cols=45  Identities=11%  Similarity=0.167  Sum_probs=33.2

Q ss_pred             cCCCC--CeEEEecC--CCChHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPG--AKVLDIGS--GSGYLTACFADLVGSNG-EVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~--~~vlD~g~--G~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~   59 (88)
                      .+.++  ++||-.|+  |.|.....+++..  +. +|++++.+++.++.+++
T Consensus       155 ~~~~g~~~~vlI~GasggiG~~~~~~a~~~--Ga~~Vi~~~~~~~~~~~~~~  204 (357)
T 2zb4_A          155 HITAGSNKTMVVSGAAGACGSVAGQIGHFL--GCSRVVGICGTHEKCILLTS  204 (357)
T ss_dssp             CCCTTSCCEEEESSTTBHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCccEEEEECCCcHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHH
Confidence            36678  89999997  4555666666654  55 89999999877777765

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=87.76  E-value=3.3  Score=25.40  Aligned_cols=60  Identities=8%  Similarity=-0.108  Sum_probs=40.4

Q ss_pred             CCeEEEecCCCChHHHHHHHHh-CCCceEEEEe-CCHHHHHHHHHhhh-hcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLV-GSNGEVTAVE-LIPEVLQFTHYNIQ-QGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D-~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++|-.| |+|+++..+++.+ ..+.+|+.++ .++..++.+.+.+. ..+      .++.++..|+.+
T Consensus        46 ~k~~lVTG-as~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~------~~~~~~~~Dl~d  108 (328)
T 2qhx_A           46 VPVALVTG-AAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP------NSAITVQADLSN  108 (328)
T ss_dssp             CCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST------TCEEEEECCCSS
T ss_pred             CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcC------CeEEEEEeeCCC
Confidence            44555444 5677777777764 2466899999 88877776666554 322      467788888765

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=87.75  E-value=1.7  Score=27.10  Aligned_cols=43  Identities=26%  Similarity=0.370  Sum_probs=31.3

Q ss_pred             CC-CCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy8023          14 LK-PGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTH   58 (88)
Q Consensus        14 ~~-~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~   58 (88)
                      +. ++.+|+-+|+| .|...+.+++..  +.+|++++.+++.++.++
T Consensus       184 ~~~~g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~  228 (366)
T 1yqd_A          184 LDEPGKHIGIVGLGGLGHVAVKFAKAF--GSKVTVISTSPSKKEEAL  228 (366)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGHHHHH
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence            45 78899999864 355556666665  458999999987776665

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=87.73  E-value=2.7  Score=24.24  Aligned_cols=59  Identities=8%  Similarity=-0.072  Sum_probs=38.6

Q ss_pred             CeEEEecCCCChHHHHHHHHhCC-Cc-------eEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGS-NG-------EVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~-~~-------~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++|-.| |+|+++..+++.+.. +.       +|+.++.++..++...+.+...      ..++.++..|+.+
T Consensus         3 k~vlITG-asggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~   69 (244)
T 2bd0_A            3 HILLITG-AGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE------GALTDTITADISD   69 (244)
T ss_dssp             EEEEEET-TTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT------TCEEEEEECCTTS
T ss_pred             CEEEEEC-CCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHcc------CCeeeEEEecCCC
Confidence            4556555 567777777665422 33       7999999987776666555432      2467788888765

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=87.50  E-value=0.86  Score=28.40  Aligned_cols=43  Identities=21%  Similarity=0.305  Sum_probs=33.6

Q ss_pred             CCCeEEEec-C-CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          16 PGAKVLDIG-S-GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        16 ~~~~vlD~g-~-G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      ++.+||-.| + +.|..++.+++.. ...+|++++.+++.++.+++
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~-~g~~Vi~~~~~~~~~~~~~~  215 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQR-TDLTVIATASRPETQEWVKS  215 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHHHH
Confidence            677898888 4 3677888888864 35689999999988887765

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=87.48  E-value=3.2  Score=24.84  Aligned_cols=65  Identities=14%  Similarity=0.076  Sum_probs=42.2

Q ss_pred             CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++|-.| |+|+++..+++.+. .+.+|+.++.++..++...+.+...... ....++.++..|+.+
T Consensus        18 ~k~vlVTG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~D~~~   83 (303)
T 1yxm_A           18 GQVAIVTG-GATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP-TKQARVIPIQCNIRN   83 (303)
T ss_dssp             TCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT-TCCCCEEEEECCTTC
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccc-cCCccEEEEecCCCC
Confidence            45677666 56777877777542 4568999999987776666555431100 013467888888765

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=87.47  E-value=1.2  Score=27.97  Aligned_cols=43  Identities=9%  Similarity=-0.026  Sum_probs=31.8

Q ss_pred             CCCCeEEEecCCC---ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          15 KPGAKVLDIGSGS---GYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        15 ~~~~~vlD~g~G~---G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .++.+||-+|+|.   |..++.+++..  +.+|++++.+++-++.+++
T Consensus       169 ~~g~~vlV~gag~G~vG~~a~q~a~~~--Ga~Vi~~~~~~~~~~~~~~  214 (379)
T 3iup_A          169 LEGHSALVHTAAASNLGQMLNQICLKD--GIKLVNIVRKQEQADLLKA  214 (379)
T ss_dssp             HTTCSCEEESSTTSHHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHh
Confidence            5677888885554   44556667765  4589999999988888775

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=87.44  E-value=2.9  Score=24.43  Aligned_cols=62  Identities=8%  Similarity=-0.137  Sum_probs=40.2

Q ss_pred             CCCCeEEEecCC-CChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSG-SGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G-~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+++++|-.|++ +|+++..+++.+ ..+.+|+.++.+....+.+++.....+       ++.++..|+.+
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~Dv~~   75 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG-------SELVFPCDVAD   75 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT-------CCCEEECCTTC
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC-------CcEEEECCCCC
Confidence            456788888864 466667666654 245689999888655555555544433       36677777765

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=87.42  E-value=2.9  Score=25.73  Aligned_cols=59  Identities=15%  Similarity=0.166  Sum_probs=39.5

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCC--Cc-eEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGS--NG-EVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~--~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++||-.| |+|.++..+++.+..  +. +|++++-++...+...+.+.        ..+++++.+|+.+
T Consensus        20 ~~k~vlVTG-atG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~--------~~~v~~~~~Dl~d   81 (344)
T 2gn4_A           20 DNQTILITG-GTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN--------DPRMRFFIGDVRD   81 (344)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC--------CTTEEEEECCTTC
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc--------CCCEEEEECCCCC
Confidence            456777555 678888888776532  33 89999998876554444332        2357888888765

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=87.42  E-value=2.8  Score=24.51  Aligned_cols=60  Identities=10%  Similarity=-0.013  Sum_probs=36.6

Q ss_pred             CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHH--HHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEV--LQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++|-.| |+|+++..+++.+. .+.+|+.++.++..  ++...+.+...+      .++.++..|+.+
T Consensus         2 ~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~   64 (258)
T 3a28_C            2 SKVAMVTG-GAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAAD------QKAVFVGLDVTD   64 (258)
T ss_dssp             CCEEEEET-TTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTT------CCEEEEECCTTC
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcC------CcEEEEEccCCC
Confidence            34566555 45666666666542 25689999988765  554444444322      357777778765

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=87.32  E-value=2.6  Score=25.67  Aligned_cols=62  Identities=13%  Similarity=0.075  Sum_probs=37.5

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHH----HHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPE----VLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+++||-.| |+|+++..+++.+ ..+.+|++++-++.    .+...........     ..+++++.+|+.+
T Consensus        24 ~~~~vlVtG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~d   90 (351)
T 3ruf_A           24 SPKTWLITG-VAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQ-----WSRFCFIEGDIRD   90 (351)
T ss_dssp             SCCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHH-----HTTEEEEECCTTC
T ss_pred             CCCeEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhcccccc-----CCceEEEEccCCC
Confidence            456788666 6788888887765 24568999997542    2222222111100     1467888888765

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=87.14  E-value=2.9  Score=24.08  Aligned_cols=61  Identities=16%  Similarity=0.132  Sum_probs=37.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEE-eCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAV-ELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~-D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+. .+.+|+.+ +.++...+...+.+...+      .++.++..|+.+
T Consensus         4 ~~~~vlItG-asggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~   66 (247)
T 2hq1_A            4 KGKTAIVTG-SSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAG------INVVVAKGDVKN   66 (247)
T ss_dssp             TTCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTT------CCEEEEESCTTS
T ss_pred             CCcEEEEEC-CCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcC------CcEEEEECCCCC
Confidence            345676655 55777777766542 35688888 555555555444444322      357777788765

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=87.14  E-value=3.1  Score=24.38  Aligned_cols=63  Identities=14%  Similarity=0.014  Sum_probs=40.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+ ..+.+|+.++.+++.++...+.+....    ...++.++..|+.+
T Consensus         6 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~   69 (260)
T 2z1n_A            6 QGKLAVVTA-GSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLV----SGAQVDIVAGDIRE   69 (260)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS----TTCCEEEEECCTTC
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CCCeEEEEEccCCC
Confidence            455677666 4567777776654 245689999999877766555544321    01257778888765

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=87.10  E-value=1.3  Score=28.35  Aligned_cols=45  Identities=24%  Similarity=0.180  Sum_probs=35.0

Q ss_pred             cCCCCCeEEEecC--CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPGAKVLDIGS--GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~~~vlD~g~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .+.++++||-.|+  |.|..++.+++..  +.++++++.+++.++.+++
T Consensus       217 ~~~~g~~VlV~GasG~iG~~a~qla~~~--Ga~vi~~~~~~~~~~~~~~  263 (447)
T 4a0s_A          217 QMKQGDIVLIWGASGGLGSYAIQFVKNG--GGIPVAVVSSAQKEAAVRA  263 (447)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh
Confidence            3578889999996  4567777777775  5689999999988887755

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=87.06  E-value=3  Score=24.09  Aligned_cols=59  Identities=17%  Similarity=-0.002  Sum_probs=38.7

Q ss_pred             CeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhh-hhcCCCCCCCcceEEeeCCccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNI-QQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++|-.| |+|.++..+++.+. .+.+|+.++.++..++...+.. ...      ..++.++..|+.+
T Consensus         3 k~vlItG-asggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~   63 (250)
T 2cfc_A            3 RVAIVTG-ASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAY------ADKVLRVRADVAD   63 (250)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTT------GGGEEEEECCTTC
T ss_pred             CEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc------CCcEEEEEecCCC
Confidence            4566556 56777777776542 3568999999987666555444 221      2467788888765

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=87.01  E-value=2.3  Score=24.94  Aligned_cols=60  Identities=7%  Similarity=0.056  Sum_probs=37.2

Q ss_pred             CCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHH-HHHHHHhhhhc-CCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEV-LQFTHYNIQQG-NPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~-~~~a~~~~~~~-~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++|-.| |+|+++..+++.+ ..+.+|+.++.++.. ++...+.+... +      .++.++..|+.+
T Consensus         4 ~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~------~~~~~~~~D~~~   66 (260)
T 1x1t_A            4 GKVAVVTG-STSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHG------VKVLYDGADLSK   66 (260)
T ss_dssp             TCEEEETT-CSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHT------SCEEEECCCTTS
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccC------CcEEEEECCCCC
Confidence            45666555 4566777776654 245689999988765 55554444332 2      346677777664

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=86.76  E-value=3.1  Score=24.02  Aligned_cols=60  Identities=10%  Similarity=-0.000  Sum_probs=38.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|.++..+++.+. .+.+|+.++.++...+...+....       ..++.++..|+.+
T Consensus         5 ~~k~vlVtG-asggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~D~~~   65 (251)
T 1zk4_A            5 DGKVAIITG-GTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-------PDQIQFFQHDSSD   65 (251)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-------TTTEEEEECCTTC
T ss_pred             CCcEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhc-------cCceEEEECCCCC
Confidence            345666555 56777777776542 356899999998766555443322       2457778888764

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=86.72  E-value=2.8  Score=25.00  Aligned_cols=62  Identities=6%  Similarity=-0.102  Sum_probs=38.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCH-HHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIP-EVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+. .+.+|+.++.++ +.++...+.+....     ..++.++..|+.+
T Consensus        22 ~~k~~lVTG-as~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-----~~~~~~~~~Dv~~   85 (288)
T 2x9g_A           22 EAPAAVVTG-AAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKER-----SNTAVVCQADLTN   85 (288)
T ss_dssp             CCCEEEETT-CSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHS-----TTCEEEEECCCSC
T ss_pred             CCCEEEEeC-CCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhc-----CCceEEEEeecCC
Confidence            345666555 55677777766542 356899999887 66655555554111     2457788888765

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=86.69  E-value=1.6  Score=26.96  Aligned_cols=43  Identities=23%  Similarity=0.225  Sum_probs=33.3

Q ss_pred             CCCCCeEEEecC--CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGS--GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +.++.+||-.|+  |.|..+..+++..  +.+|+++ .+++.++.+++
T Consensus       148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~--Ga~Vi~~-~~~~~~~~~~~  192 (343)
T 3gaz_A          148 VQDGQTVLIQGGGGGVGHVAIQIALAR--GARVFAT-ARGSDLEYVRD  192 (343)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEE-ECHHHHHHHHH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHC--CCEEEEE-eCHHHHHHHHH
Confidence            567889999993  4677788888875  5589999 88877777655

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=86.62  E-value=3.7  Score=24.70  Aligned_cols=61  Identities=20%  Similarity=0.033  Sum_probs=38.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCC--HHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELI--PEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.| |+|+++..+++.+ ..+.+|+.++.+  +...+...+.....+      .++.++..|+.+
T Consensus        48 ~~k~vlVTG-as~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dv~d  111 (294)
T 3r3s_A           48 KDRKALVTG-GDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG------RKAVLLPGDLSD  111 (294)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT------CCEEECCCCTTS
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC------CcEEEEEecCCC
Confidence            345677666 5566777776654 245689888876  344555555555433      467777777765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	88
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	2e-11
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	6e-11
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	8e-11
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	2e-10
d1i1na_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	3e-10
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	3e-09
d1r18a_	223	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	2e-08
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	9e-08
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	2e-07
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	3e-07
d1g8aa_	227	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro	5e-07
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	8e-07
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	1e-06
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	1e-06
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	3e-06
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	4e-06
d1o54a_	266	c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo	6e-06
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	7e-06
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	1e-05
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	1e-05
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	1e-05
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	1e-05
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	2e-05
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	2e-05
d1im8a_	225	c.66.1.14 (A:) Hypothetical protein HI0319 (YecO)	3e-05
d1zq9a1	278	c.66.1.24 (A:36-313) Probable dimethyladenosine tr	2e-04
d2ih2a1	223	c.66.1.27 (A:21-243) DNA methylase TaqI, N-termina	5e-04
d2avna1	246	c.66.1.41 (A:1-246) Hypothetical methyltransferase	6e-04
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	8e-04
d2o57a1	282	c.66.1.18 (A:16-297) Putative sarcosine dimethylgl	0.001
d1qyra_	252	c.66.1.24 (A:) High level kasugamycin resistance p	0.001
d2igta1	309	c.66.1.51 (A:1-309) Putative methyltransferase Atu	0.001
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	0.001
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	0.002
d1vlma_	208	c.66.1.41 (A:) Possible histamine N-methyltransfer	0.003
d1p91a_	268	c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher	0.003
d2frna1	260	c.66.1.47 (A:19-278) Hypothetical protein PH0793 {	0.004

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 2e-11
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 13  NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
           ++ PG  VL+ GSGSG ++   +  VGS G V + E+  +       N + 
Sbjct: 95  DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH 145

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 53.9 bits (128), Expect = 6e-11
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 4  ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
          A+ +++    LK   +VLD+ +G G++   FA  V    +V A +L  ++L+     I+ 
Sbjct: 5  AKLMQIA--ALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEG 59

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 53.8 bits (129), Expect = 8e-11
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 13  NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNI 72
           ++ PGA+VL+ G+GSG LT      VG  G+V + E   +  +    N+     +   N 
Sbjct: 93  DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNW 152

Query: 73  KF 74
           + 
Sbjct: 153 RL 154

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 52.8 bits (126), Expect = 2e-10
 Identities = 13/48 (27%), Positives = 27/48 (56%)

Query: 9   LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF 56
           +++  L+PG  +L++G GSG +++     +   G +T VE   + L+ 
Sbjct: 78  IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKK 125

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 3e-10
 Identities = 37/81 (45%), Positives = 54/81 (66%)

Query: 1   MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60
            M+A ALELL D L  GAK LD+GSGSG LTACFA +VG  G+V  ++ I E++  +  N
Sbjct: 61  HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNN 120

Query: 61  IQQGNPELLPNIKFEPQTGEG 81
           +++ +P LL + + +   G+G
Sbjct: 121 VRKDDPTLLSSGRVQLVVGDG 141

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 49.6 bits (117), Expect = 3e-09
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 6  ALELLKD--NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
          +L L+      +   +VLDIG+G+G+    F+  V    E   V+   E+++      Q+
Sbjct: 4  SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQE 60

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 223

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.8 bits (110), Expect = 2e-08
 Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 5/86 (5%)

Query: 1   MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNG-----EVTAVELIPEVLQ 55
            M+A ALE L+D+LKPGA++LD+GSGSGYLTACF   + + G      +  +E   E+++
Sbjct: 65  HMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVR 124

Query: 56  FTHYNIQQGNPELLPNIKFEPQTGEG 81
            +  N+   +  +L + +     G+G
Sbjct: 125 RSKANLNTDDRSMLDSGQLLIVEGDG 150

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 45.3 bits (106), Expect = 9e-08
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 4  ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
          A    +L+  +KPG ++LD+GSGSG +   +A   G     T +++            ++
Sbjct: 23 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHGI--TGTGIDMSSLFTAQAKRRAEE 78

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 44.1 bits (103), Expect = 2e-07
 Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 3  NARALELLKDNL---KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY 59
          N   +  L + +        ++D G G GYL      L+    + T ++    +L     
Sbjct: 11 NDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARE 70

Query: 60 NIQQ 63
            + 
Sbjct: 71 LFRL 74

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 43.6 bits (102), Expect = 3e-07
 Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 5   RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
           + L+++   +K  +K+L +G+ +G   +  AD+    G V A+E  P +++
Sbjct: 65  KGLKVM--PIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMR 112

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 43.2 bits (101), Expect = 5e-07
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 8/72 (11%)

Query: 13  NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVL--------QFTHYNIQQG 64
            +KPG  VL +G  SG   +  +D+VG  G++  +E  P VL        +  +     G
Sbjct: 70  PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILG 129

Query: 65  NPELLPNIKFEP 76
           +       +   
Sbjct: 130 DATKPEEYRALV 141

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 42.6 bits (99), Expect = 8e-07
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 1  MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60
          +M+   +       +PG  +L++GS  G  T+   +      ++T VE   E +      
Sbjct: 6  VMHPFMVRAFTPFFRPG-NLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGR 61

Query: 61 IQQ 63
          ++ 
Sbjct: 62 LKD 64

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 42.0 bits (98), Expect = 1e-06
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 4  ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
          A  L+  +  L+   +VL +G+ SG   +  AD+V   G + AVE   +  +
Sbjct: 44 AMILKGHRLKLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFE 94

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 41.7 bits (97), Expect = 1e-06
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 9/83 (10%)

Query: 5  RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG 64
          R L +           +D+G G+G +T   A        V A++  PE +  T  N+Q+ 
Sbjct: 22 RCLIMCLAEPGKNDVAVDVGCGTGGVTLELAG---RVRRVYAIDRNPEAISTTEMNLQRH 78

Query: 65 NPELLPNIKFEPQTGEGDIQYLL 87
             L  N+       EGD    L
Sbjct: 79 G--LGDNVTLM----EGDAPEAL 95

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 41.1 bits (95), Expect = 3e-06
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 9  LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF 56
          L++   K G  VLD+G G G     +       GE   V++    +  
Sbjct: 17 LIRLYTKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSIND 62

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 4e-06
 Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 3/61 (4%)

Query: 5  RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG 64
            +      +     VLD+G G+G L+   A       +V  V+    + Q         
Sbjct: 25 DFIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSEILYQAMDIIRLNK 81

Query: 65 N 65
           
Sbjct: 82 L 82

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.1 bits (93), Expect = 6e-06
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 13  NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQ 55
           ++K G +++D G GSG + A  A  VGS+G+V A E   E  +
Sbjct: 100 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAK 142

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 7e-06
 Identities = 11/89 (12%), Positives = 25/89 (28%), Gaps = 13/89 (14%)

Query: 4   ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
           A+ ++ +   +      +D+GSG G +         +      VE      ++     ++
Sbjct: 141 AQMIDEI--KMTDDDLFVDLGSGVGQVV-LQVAAATNCKHHYGVEKADIPAKYAETMDRE 197

Query: 64  GNPEL------LPNIKFEPQTGEGDIQYL 86
               +            E     GD    
Sbjct: 198 FRKWMKWYGKKHAEYTLE----RGDFLSE 222

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.4 bits (91), Expect = 1e-05
 Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 2/52 (3%)

Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG 64
          +L     VLD+GSG+G L    A       +V  +E                
Sbjct: 30 HLFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECSSISDYAVKIVKANK 79

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.3 bits (91), Expect = 1e-05
 Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 3/65 (4%)

Query: 4   ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
           +   +     LK G   +D+GSG G      A   G        E++ +    T    ++
Sbjct: 206 SDVYQQC--QLKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLTILQYEE 262

Query: 64  GNPEL 68
                
Sbjct: 263 LKKRC 267

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 38.9 bits (89), Expect = 1e-05
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 13 NLKPGAKVLDIGSGSGYLTACFAD----LVGSNGEVTAVELIPEVLQFTHYNIQQGN 65
          N+ PGA+VL    G     +  +     +VG+     AVE          +   QG+
Sbjct: 17 NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGD 73

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 1e-05
 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 13 NLKPGAKVLDIGSGSGYLT-----ACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
          + K   K+L IG G+G +         A   G       VE   E +      + +
Sbjct: 37 DTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAK 92

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (90), Expect = 2e-05
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 5  RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG 64
           A+   KD  K    VLD+G G+G L+   A        V  V++   +          G
Sbjct: 28 NAIIQNKDLFK-DKIVLDVGCGTGILSMFAAKHGAK--HVIGVDMSSIIEMAKELVELNG 84

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 38.5 bits (88), Expect = 2e-05
 Identities = 8/32 (25%), Positives = 12/32 (37%)

Query: 5  RALELLKDNLKPGAKVLDIGSGSGYLTACFAD 36
            +E   +N       LD+  G+G LT     
Sbjct: 26 FIIEKCVENNLVFDDYLDLACGTGNLTENLCP 57

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

 Score = 38.2 bits (87), Expect = 3e-05
 Identities = 8/63 (12%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 2  MNARALELLKDNLKPGAKVLDIGSGSGYLT-ACFADLVGSNGEVTAVELIPEVLQFTHYN 60
          +      L +  +   + V D+G   G  T +   ++   N ++  ++    +++    +
Sbjct: 25 IITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQH 84

Query: 61 IQQ 63
          I  
Sbjct: 85 IAA 87

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} Length = 278

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 2e-04
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
           L+P   VL++G G+G +T     L+    +V A EL P ++   H  +Q 
Sbjct: 18 ALRPTDVVLEVGPGTGNMTVK---LLEKAKKVVACELDPRLVAELHKRVQG 65

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} Length = 223

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

 Score = 34.7 bits (78), Expect = 5e-04
 Identities = 14/73 (19%), Positives = 22/73 (30%)

Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNI 72
              G +VL+     G     F +  G+      VE+ P+ L    +        LL   
Sbjct: 16 EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEP 75

Query: 73 KFEPQTGEGDIQY 85
                  G+  Y
Sbjct: 76 GEAFDLILGNPPY 88

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.4 bits (77), Expect = 6e-04
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 1  MMNARALELLKDNLKPGAKVLDIGSGSGYLTACF 34
          + +      L++ LK   +VLD+G G+G  +   
Sbjct: 27 LYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFL 60

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.2 bits (77), Expect = 8e-04
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 7   LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNP 66
           L LL+       +VLD+  G+G  +    +       VT+V+   ++L++          
Sbjct: 49  LGLLRQ--HGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRK 103

Query: 67  EL 68
           E 
Sbjct: 104 EP 105

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

 Score = 34.0 bits (76), Expect = 0.001
 Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 4/64 (6%)

Query: 2   MNARALELLKD--NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY 59
            +      L     L+  AK LD+G+G G          G    +  + + P   +    
Sbjct: 51  TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV--SIDCLNIAPVQNKRNEE 108

Query: 60  NIQQ 63
              Q
Sbjct: 109 YNNQ 112

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

 Score = 33.7 bits (76), Expect = 0.001
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 13 NLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL---IPEVLQFTHYNIQQGNPELL 69
          N + G  +++IG G   LT     +     ++T +EL   +   LQ   +   +      
Sbjct: 18 NPQKGQAMVEIGPGLAALTEP---VGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQ 74

Query: 70 PNIKFEP 76
            + F  
Sbjct: 75 DAMTFNF 81

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} Length = 309

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 33.6 bits (76), Expect = 0.001
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 1   MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60
           +++   L+   +      KVL++   +G  +   A   G+  EVT V+   + + +   N
Sbjct: 117 IVHWEWLKNAVETADRPLKVLNLFGYTGVAS-LVAAAAGA--EVTHVDASKKAIGWAKEN 173

Query: 61  IQQGNPE 67
                 E
Sbjct: 174 QVLAGLE 180

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 33.5 bits (75), Expect = 0.001
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 9  LLKDNLKPGAKVLDIGSGSGYLTACF 34
            +D  +   +VLD+  G+G  T   
Sbjct: 34 FKEDAKREVRRVLDLACGTGIPTLEL 59

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 33.0 bits (74), Expect = 0.002
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 3  NARALELLKDNLKPGAKVLDIGSGSGYLTACFA 35
          ++  L   K  + PG + LD+G G+G  +   A
Sbjct: 19 HSDVLAAAKV-VAPG-RTLDLGCGNGRNSLYLA 49

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Length = 208

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

 Score = 32.8 bits (73), Expect = 0.003
 Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 8/60 (13%)

Query: 4  ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ 63
             L+ +K  L P  + ++IG G+G                  VE    + +        
Sbjct: 25 LSELQAVKC-LLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKRGVF 76

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

 Score = 32.6 bits (73), Expect = 0.003
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 1/85 (1%)

Query: 1   MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN 60
           + +A   +L +        VLDIG G GY T  FAD          +++    ++     
Sbjct: 69  LRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADA-LPEITTFGLDVSKVAIKAAAKR 127

Query: 61  IQQGNPELLPNIKFEPQTGEGDIQY 85
             Q    +  + +        D   
Sbjct: 128 YPQVTFCVASSHRLPFSDTSMDAII 152

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 32.4 bits (73), Expect = 0.004
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 10  LKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ 62
           +    KP   V+D+ +G G+L+   A  V    +V A+E  P   +F   NI 
Sbjct: 101 MAKVAKPDELVVDMFAGIGHLSLPIA--VYGKAKVIAIEKDPYTFKFLVENIH 151

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	88
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.71
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.7
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.69
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.69
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.68
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.67
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.65
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.65
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.65
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.64
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.61
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.6
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.6
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.6
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.6
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.6
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.6
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.59
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.57
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.56
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.55
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.55
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.55
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.54
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.54
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.54
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.53
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.53
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.53
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.53
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.52
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.51
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.51
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.51
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.51
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.51
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.46
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.46
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.45
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.45
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.43
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.42
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.42
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.42
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.42
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.4
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.39
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.39
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.37
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.36
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.36
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.35
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.35
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.35
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.34
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.34
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.34
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.32
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	99.31
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.31
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.3
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.29
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.29
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.28
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.28
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.27
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.26
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.21
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	99.12
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	99.12
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	99.07
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.06
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.03
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.97
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.9
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.84
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.83
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.83
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.81
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.69
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.65
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.59
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.59
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.57
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.55
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.52
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.51
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.49
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.47
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.45
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.44
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	98.4
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.38
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	98.37
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	98.37
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.32
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.3
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.25
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	98.24
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.15
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.15
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.04
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.87
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.62
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	97.3
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.27
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.24
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.18
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	97.12
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.11
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	96.92
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.91
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.81
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.8
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.78
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	96.69
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.64
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.59
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.49
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.46
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.43
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.23
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.22
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.16
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.11
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.03
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	95.91
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	95.87
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	95.82
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.8
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.76
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.75
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	95.74
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	95.73
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.6
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	95.6
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.59
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.58
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.53
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	95.48
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.42
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	95.4
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.32
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.23
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	95.14
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.09
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.09
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.89
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	94.82
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	94.73
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	94.61
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.58
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	94.53
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	94.37
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	94.29
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.29
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	94.13
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.05
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.62
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	93.61
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	93.5
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	93.49
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	93.39
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	93.23
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	93.22
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	92.86
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.83
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	92.81
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	92.59
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	92.25
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	92.25
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	92.15
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	91.99
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	91.98
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.95
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	91.92
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	91.72
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	91.61
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	90.96
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	90.78
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	90.71
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	90.55
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	90.1
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	90.04
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.94
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	89.8
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	89.55
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	89.5
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	89.25
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.12
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	88.76
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	88.35
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	88.32
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	88.24
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	87.81
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	87.53
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	87.52
d2dpma_	275	DNA methylase DpnM {Streptococcus pneumoniae [TaxI	87.26
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	86.95
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	86.84
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	84.75
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	84.39
d1yf3a1	259	DNA methylase T4DAM {Bacteriophage T4 [TaxId: 1066	84.25
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	83.15
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	82.91
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	82.52
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	82.29
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	81.8
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	81.1
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	80.83
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	80.67
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	80.62

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.71  E-value=9e-17  Score=93.32  Aligned_cols=77  Identities=27%  Similarity=0.399  Sum_probs=68.4

Q ss_pred             HHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023           3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      ++++++.+.  +.++.+|||+|||+|..+..+++..++.++|+++|+++.+++.|+++++..+     ..++.++.+|+.
T Consensus        64 ~a~~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~-----~~n~~~~~~d~~  136 (213)
T d1dl5a1          64 MALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-----IENVIFVCGDGY  136 (213)
T ss_dssp             HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEESCGG
T ss_pred             hHHHHHhhh--ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc-----ccccccccCchH
Confidence            456667665  7899999999999999999999998888999999999999999999999877     788999999988


Q ss_pred             cccc
Q psy8023          83 IQYL   86 (88)
Q Consensus        83 ~~~~   86 (88)
                      +.++
T Consensus       137 ~~~~  140 (213)
T d1dl5a1         137 YGVP  140 (213)
T ss_dssp             GCCG
T ss_pred             Hccc
Confidence            7654

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.70  E-value=1.5e-16  Score=92.54  Aligned_cols=74  Identities=14%  Similarity=0.114  Sum_probs=61.1

Q ss_pred             HHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         6 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +...+..+.+++.+|||+|||+|..+..+++... ++.+|+|+|+|+.|++.|+++.+..+    ...++++..+|..+
T Consensus        29 i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~----~~~~~~~~~~d~~~  103 (225)
T d1im8a_          29 IGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH----SEIPVEILCNDIRH  103 (225)
T ss_dssp             HHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSC----CSSCEEEECSCTTT
T ss_pred             HHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhc----ccchhhhccchhhc
Confidence            3444455678889999999999999999998753 67799999999999999999998766    56678888888654

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=1.6e-16  Score=93.42  Aligned_cols=65  Identities=18%  Similarity=0.236  Sum_probs=58.7

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +.++++|||+|||+|..+..+++..  +.+++|+|+|+.+++.++++....+    ...+++|+.+|+.+.
T Consensus        31 l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~g----l~~~v~~~~~d~~~~   95 (245)
T d1nkva_          31 MKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELG----VSERVHFIHNDAAGY   95 (245)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEESCCTTC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhh----ccccchhhhhHHhhc
Confidence            6789999999999999999998875  4689999999999999999999887    667899999998874

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.2e-17  Score=94.39  Aligned_cols=85  Identities=45%  Similarity=0.744  Sum_probs=70.6

Q ss_pred             cHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023           2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG   81 (88)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (88)
                      +++++++.+...+.++.+|||+|||+|+.+..+++..++.++|+++|+++++++.|++++++.+.......++.+..+|+
T Consensus        62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~  141 (224)
T d1i1na_          62 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG  141 (224)
T ss_dssp             HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred             HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence            56788888876688999999999999999999999988888999999999999999999986551111246788999998


Q ss_pred             ccccc
Q psy8023          82 DIQYL   86 (88)
Q Consensus        82 ~~~~~   86 (88)
                      .++.+
T Consensus       142 ~~~~~  146 (224)
T d1i1na_         142 RMGYA  146 (224)
T ss_dssp             GGCCG
T ss_pred             ccccc
Confidence            76553

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.68  E-value=1.5e-16  Score=93.05  Aligned_cols=62  Identities=24%  Similarity=0.348  Sum_probs=56.3

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||+|.++..+++..   .+++|+|+|+.+++.|+++....+     ..++.++++|+++
T Consensus        14 ~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~-----~~~~~~~~~d~~~   75 (234)
T d1xxla_          14 CRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKG-----VENVRFQQGTAES   75 (234)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHT-----CCSEEEEECBTTB
T ss_pred             CCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcccc-----ccccccccccccc
Confidence            6799999999999999999999874   479999999999999999998877     6789999999876

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.67  E-value=2e-16  Score=90.02  Aligned_cols=64  Identities=22%  Similarity=0.253  Sum_probs=57.3

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +.++.+|||+|||+|.+++.+++.   ..+|+++|+++.+++.|++|+++++    ...+++++++|+.+.
T Consensus        31 ~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~g----l~~~v~~~~gda~~~   94 (186)
T d1l3ia_          31 PGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHG----LGDNVTLMEGDAPEA   94 (186)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTT----CCTTEEEEESCHHHH
T ss_pred             CCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcC----CCcceEEEECchhhc
Confidence            678999999999999999998875   3489999999999999999999988    567999999998763

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.65  E-value=4.9e-16  Score=90.27  Aligned_cols=70  Identities=26%  Similarity=0.463  Sum_probs=60.0

Q ss_pred             HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++++.+.  +.++++|||+|||+|.++..+++..   .+++|+|+|+.+++.|+++....+     ..+++++++|+++
T Consensus         5 ~~ll~~~~--l~~~~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~i~~A~~~~~~~~-----~~~i~~~~~d~~~   74 (231)
T d1vl5a_           5 AKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNG-----HQQVEYVQGDAEQ   74 (231)
T ss_dssp             HHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCC-C
T ss_pred             HHHHHhcC--CCCcCEEEEecccCcHHHHHHHHhC---CEEEEEECCHHHHhhhhhcccccc-----ccccccccccccc
Confidence            45666655  7888999999999999999998763   479999999999999999998877     6789999999875

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=3.5e-16  Score=92.93  Aligned_cols=74  Identities=31%  Similarity=0.455  Sum_probs=62.3

Q ss_pred             HHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023           3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      ++.|++.+.....++++|||+|||+|.+++.+++.   +.+|+|+|+|+.+++.|++|++.++    .  +.++..+|..
T Consensus       107 T~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~----~--~~~~~~~d~~  177 (254)
T d2nxca1         107 TRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNG----V--RPRFLEGSLE  177 (254)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTT----C--CCEEEESCHH
T ss_pred             hhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcC----C--ceeEEecccc
Confidence            46788888888889999999999999999887764   3589999999999999999999887    2  4578888876


Q ss_pred             ccc
Q psy8023          83 IQY   85 (88)
Q Consensus        83 ~~~   85 (88)
                      +.+
T Consensus       178 ~~~  180 (254)
T d2nxca1         178 AAL  180 (254)
T ss_dssp             HHG
T ss_pred             ccc
Confidence            644

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.65  E-value=5.2e-16  Score=91.97  Aligned_cols=68  Identities=21%  Similarity=0.268  Sum_probs=62.4

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      +.++++|||+|||+|.++..+++..++.++|+++|.++++++.|++++++++    ...++++..+|+.+.+
T Consensus        83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~----~~~nv~~~~~Di~~~~  150 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY----DIGNVRTSRSDIADFI  150 (250)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS----CCTTEEEECSCTTTCC
T ss_pred             CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc----CCCceEEEEeeeeccc
Confidence            6899999999999999999999998888999999999999999999998876    4789999999988754

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.64  E-value=1.8e-15  Score=90.38  Aligned_cols=74  Identities=26%  Similarity=0.351  Sum_probs=65.1

Q ss_pred             HHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023           6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus         6 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ++.++.  +.++++|||+|||+|.++..+++..++.++|+++|+++++++.|++++++.+    ...++.+...|+...+
T Consensus        95 Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g----~~~~v~~~~~d~~~~~  168 (266)
T d1o54a_          95 IAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG----LIERVTIKVRDISEGF  168 (266)
T ss_dssp             HHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT----CGGGEEEECCCGGGCC
T ss_pred             HHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc----cccCcEEEeccccccc
Confidence            444444  7899999999999999999999998889999999999999999999999987    5678999999977654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.61  E-value=2.2e-15  Score=90.15  Aligned_cols=64  Identities=17%  Similarity=0.115  Sum_probs=57.6

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++.+|||+|||+|..+..+++..  +.+|+|+|+|+.+++.|+++....+    ...+++++++|+.+
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~g----l~~~v~~~~~d~~~  128 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAG----LADNITVKYGSFLE  128 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHT----CTTTEEEEECCTTS
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhccccccc----cccccccccccccc
Confidence            5688999999999999999999876  4589999999999999999998877    56789999999865

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.60  E-value=7.1e-15  Score=85.40  Aligned_cols=76  Identities=32%  Similarity=0.596  Sum_probs=68.2

Q ss_pred             cHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023           2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG   81 (88)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (88)
                      +++++++.+.  +.++.+|||+|||+|+.+..+++..+  .+|+++|.++++++.+++++...+     ..++.++.+|+
T Consensus        66 ~~a~ml~~L~--l~~g~~VLeIGsGsGY~taila~l~g--~~V~~ie~~~~l~~~a~~~l~~~g-----~~nv~~~~gd~  136 (215)
T d1jg1a_          66 MVAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAG-----VKNVHVILGDG  136 (215)
T ss_dssp             HHHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEESCG
T ss_pred             hHHHHHHhhc--cCccceEEEecCCCChhHHHHHHhhC--ceeEEEeccHHHHHHHHHHHHHcC-----CceeEEEECcc
Confidence            4677888887  88999999999999999999998863  579999999999999999999988     78999999999


Q ss_pred             ccccc
Q psy8023          82 DIQYL   86 (88)
Q Consensus        82 ~~~~~   86 (88)
                      .+++|
T Consensus       137 ~~g~~  141 (215)
T d1jg1a_         137 SKGFP  141 (215)
T ss_dssp             GGCCG
T ss_pred             ccCCc
Confidence            98765

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=6.8e-15  Score=88.12  Aligned_cols=66  Identities=18%  Similarity=0.290  Sum_probs=59.3

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      ..+.+|||+|||+|.+++.++... |+.+++++|+|+.+++.|++|+.+++     ..+++++.+|..+.++
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~-p~~~v~avDis~~Al~~A~~Na~~~~-----~~~v~~~~~d~~~~~~  172 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLA-----IKNIHILQSDWFSALA  172 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHT-----CCSEEEECCSTTGGGT
T ss_pred             ccccceeeeehhhhHHHHHHHhhC-CcceeeeccchhHHHhHHHHHHHHhC-----cccceeeecccccccC
Confidence            456789999999999999999986 78999999999999999999999988     5689999999887653

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.60  E-value=6.4e-15  Score=87.80  Aligned_cols=74  Identities=24%  Similarity=0.323  Sum_probs=62.9

Q ss_pred             HHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         6 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++..+.  +.|+++|||+|||+|..+..+++..+|.++++++|+++++++.|++|++.....  ...++.+.++|+.+
T Consensus        88 Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~--~~~nv~~~~~d~~~  161 (264)
T d1i9ga_          88 IVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ--PPDNWRLVVSDLAD  161 (264)
T ss_dssp             HHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS--CCTTEEEECSCGGG
T ss_pred             HHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccC--CCceEEEEeccccc
Confidence            344444  789999999999999999999999989999999999999999999999864211  35789999999875

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.60  E-value=4.5e-15  Score=87.59  Aligned_cols=67  Identities=18%  Similarity=0.137  Sum_probs=56.8

Q ss_pred             hhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          11 KDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        11 ~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..+.+++++|||+|||+|..+..+++..  ..+|+|+|+|+.+++.|+++....+    ...++.+.++|+..
T Consensus        19 ~~~~~~~~~VLDlGCG~G~~~~~~~~~~--~~~v~GiD~S~~~l~~A~~r~~~~~----~~~~v~f~~~D~~~   85 (252)
T d1ri5a_          19 RLYTKRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMK----RRFKVFFRAQDSYG   85 (252)
T ss_dssp             HHHCCTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSC----CSSEEEEEESCTTT
T ss_pred             HHhCCCcCEEEEecccCcHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHhcC----CCcceEEEEcchhh
Confidence            3456788999999999999999998863  4589999999999999999988766    45689999999854

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.60  E-value=7.9e-15  Score=84.53  Aligned_cols=68  Identities=22%  Similarity=0.283  Sum_probs=54.9

Q ss_pred             HHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         7 ~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ...+..+++++.+|||+|||+|.++..+++.   +.+++|+|+|+.+++.|+++....+      .++.++++|+.+
T Consensus        28 ~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~------~~~~~~~~d~~~   95 (226)
T d1ve3a1          28 EPLLMKYMKKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRE------SNVEFIVGDARK   95 (226)
T ss_dssp             HHHHHHSCCSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT------CCCEEEECCTTS
T ss_pred             HHHHHHhcCCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhcccc------cccccccccccc
Confidence            3344445678889999999999999999875   4589999999999999999987754      346777777765

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.60  E-value=4.1e-15  Score=87.30  Aligned_cols=67  Identities=21%  Similarity=0.156  Sum_probs=55.2

Q ss_pred             HHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           8 ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         8 ~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.+.....++.+|||+|||+|..+..+++..   .+++|+|.|+.|++.|+++.+..+      .+++++++|+.+
T Consensus        29 ~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g---~~v~GvD~S~~ml~~A~~~~~~~~------~~v~~~~~d~~~   95 (246)
T d1y8ca_          29 EKCVENNLVFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQG------LKPRLACQDISN   95 (246)
T ss_dssp             HHHHTTTCCTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTT------CCCEEECCCGGG
T ss_pred             HHHHHhCCCCCeEEEEeCcCCHHHHHHHHhC---CccEeeccchhhhhhccccccccC------ccceeeccchhh
Confidence            3444334566799999999999999999873   379999999999999999988765      368999999875

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.59  E-value=5.1e-15  Score=85.67  Aligned_cols=62  Identities=23%  Similarity=0.282  Sum_probs=54.6

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.|+++|||+|||+|..+.++++.. ++++|+|+|+|+.+++.++++.+..       .++.++.+|+..
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v-~~g~V~gvDis~~~i~~a~~~a~~~-------~ni~~i~~d~~~  115 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRER-------NNIIPLLFDASK  115 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHHC-------SSEEEECSCTTC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhc-cCCeEEEEeCCHHHHHHHHHHhhcc-------CCceEEEeeccC
Confidence            5789999999999999999999987 5679999999999999999998764       367888888765

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.57  E-value=1.2e-14  Score=85.13  Aligned_cols=60  Identities=27%  Similarity=0.345  Sum_probs=52.2

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++++|||+|||+|..+..+++.   +.+++|+|+|+.|++.|+++....+      .+++++++|+++
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~------~~i~~~~~d~~~   99 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERN------LKIEFLQGDVLE   99 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT------CCCEEEESCGGG
T ss_pred             CCCCEEEEeCCCCCccchhhccc---ceEEEEEeecccccccccccccccc------ccchheehhhhh
Confidence            45678999999999999999986   3479999999999999999998765      368999999865

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.56  E-value=1.8e-14  Score=82.24  Aligned_cols=66  Identities=21%  Similarity=0.321  Sum_probs=55.2

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ..++.+|||+|||+|.+++.++... +  +++++|+|+.+++.++++++.++   ....++++..+|..+.+
T Consensus        50 ~~~~~~VLDiGcG~G~~~~~la~~~-~--~v~~iD~s~~~i~~a~~n~~~~~---l~~~~i~~~~~d~~~~~  115 (194)
T d1dusa_          50 VDKDDDILDLGCGYGVIGIALADEV-K--STTMADINRRAIKLAKENIKLNN---LDNYDIRVVHSDLYENV  115 (194)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHGGGS-S--EEEEEESCHHHHHHHHHHHHHTT---CTTSCEEEEECSTTTTC
T ss_pred             cCCCCeEEEEeecCChhHHHHHhhc-c--ccceeeeccccchhHHHHHHHhC---CccceEEEEEcchhhhh
Confidence            4678899999999999999988764 3  79999999999999999998876   11346899999987643

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=2.3e-14  Score=86.23  Aligned_cols=64  Identities=16%  Similarity=0.156  Sum_probs=58.2

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||.|..++.+++..  +++|+|+++|++.++.+++++.+.+    ...++++..+|..+
T Consensus        60 l~~G~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g----~~~~v~~~~~d~~~  123 (285)
T d1kpga_          60 LQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSE----NLRSKRVLLAGWEQ  123 (285)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCC----CCSCEEEEESCGGG
T ss_pred             CCCCCEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhh----hhhhhHHHHhhhhc
Confidence            6789999999999999999999997  5799999999999999999998877    67899999998754

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.7e-14  Score=86.13  Aligned_cols=77  Identities=22%  Similarity=0.277  Sum_probs=63.7

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCC------CCCCcceEEee
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPE------LLPNIKFEPQT   78 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~   78 (88)
                      .++..+.  +.++++|||+|||+|.++..+++..+++++|+++|+++++++.|++|++..+..      ....+++++..
T Consensus        89 ~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~  166 (324)
T d2b25a1          89 MILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  166 (324)
T ss_dssp             HHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence            4455554  789999999999999999999999989999999999999999999999764210      12357899999


Q ss_pred             CCccc
Q psy8023          79 GEGDI   83 (88)
Q Consensus        79 ~d~~~   83 (88)
                      +|+.+
T Consensus       167 ~di~~  171 (324)
T d2b25a1         167 KDISG  171 (324)
T ss_dssp             SCTTC
T ss_pred             cchhh
Confidence            98765

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.55  E-value=1.6e-14  Score=81.58  Aligned_cols=76  Identities=14%  Similarity=0.032  Sum_probs=54.9

Q ss_pred             HHHHHHhhc-CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCC-------CCCCcceEE
Q psy8023           5 RALELLKDN-LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPE-------LLPNIKFEP   76 (88)
Q Consensus         5 ~~~~~~~~~-~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~   76 (88)
                      .+.+.+... ++++.+|||+|||+|..+..++++   +.+|+|+|+|+.+++.|+++.+.....       ......+++
T Consensus         8 ~~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (201)
T d1pjza_           8 DLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEI   84 (201)
T ss_dssp             HHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEE
T ss_pred             HHHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccce
Confidence            343334332 578899999999999999999986   458999999999999999988654310       001234567


Q ss_pred             eeCCccc
Q psy8023          77 QTGEGDI   83 (88)
Q Consensus        77 ~~~d~~~   83 (88)
                      ..+|..+
T Consensus        85 ~~~d~~~   91 (201)
T d1pjza_          85 WCGDFFA   91 (201)
T ss_dssp             EEECCSS
T ss_pred             ecccccc
Confidence            7776654

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.54  E-value=3.4e-14  Score=82.95  Aligned_cols=72  Identities=31%  Similarity=0.502  Sum_probs=60.7

Q ss_pred             HHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023           3 NARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus         3 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      +..+++.+.  +.++.+|||+|||+|+.+..+++..   .+|+++|+++.+++.|+++...       ..++.++.+|..
T Consensus        59 ~a~ml~~L~--l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~-------~~nv~~~~~d~~  126 (224)
T d1vbfa_          59 GIFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY-------YNNIKLILGDGT  126 (224)
T ss_dssp             HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTT-------CSSEEEEESCGG
T ss_pred             HHHHHHHhh--hcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhc-------ccccccccCchh
Confidence            456667665  7899999999999999999888874   4799999999999999998765       358999999988


Q ss_pred             cccc
Q psy8023          83 IQYL   86 (88)
Q Consensus        83 ~~~~   86 (88)
                      .++|
T Consensus       127 ~g~~  130 (224)
T d1vbfa_         127 LGYE  130 (224)
T ss_dssp             GCCG
T ss_pred             hcch
Confidence            7664

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.54  E-value=2.8e-14  Score=84.90  Aligned_cols=70  Identities=21%  Similarity=0.190  Sum_probs=61.2

Q ss_pred             HhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          10 LKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        10 ~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      +...+.++.+|||+|||+|.+++.+++..  .++|+++|+++.+++.+++|++.++    ...+++++++|+.+..
T Consensus       101 i~~~~~~g~~VlD~~aG~G~~~l~~a~~~--~~~V~avd~n~~a~~~~~~N~~~n~----l~~~v~~~~~D~~~~~  170 (260)
T d2frna1         101 MAKVAKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNK----VEDRMSAYNMDNRDFP  170 (260)
T ss_dssp             HHHHCCTTCEEEETTCTTTTTHHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTT----CTTTEEEECSCTTTCC
T ss_pred             HHhhcCCccEEEECcceEcHHHHHHHHhC--CcEEEEecCCHHHHHHHHHHHHHhC----CCceEEEEEcchHHhc
Confidence            44456789999999999999999999873  4689999999999999999999998    6678999999987643

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.54  E-value=4e-14  Score=82.91  Aligned_cols=63  Identities=22%  Similarity=0.368  Sum_probs=53.3

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +.++.+|||+|||+|.++..++... ++++|+|+|+|+.+++.++++....       .++..+.+|....
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~~-------~ni~~i~~d~~~~  134 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAER-------ENIIPILGDANKP  134 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTC-------TTEEEEECCTTCG
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhhh-------cccceEEEeeccC
Confidence            4688999999999999999999985 7789999999999999999987653       3566677776654

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.53  E-value=3.1e-14  Score=85.43  Aligned_cols=64  Identities=20%  Similarity=0.154  Sum_probs=55.9

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.++.+|||+|||.|.++..+++..  +.+|+|+|+|+++++.|+++++..+    ...++.+...|..+
T Consensus        50 l~~g~~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~----l~~~~~~~~~d~~~  113 (280)
T d2fk8a1          50 LKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASID----TNRSRQVLLQGWED  113 (280)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSC----CSSCEEEEESCGGG
T ss_pred             CCCCCEEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhc----cccchhhhhhhhhh
Confidence            5789999999999999999999886  4699999999999999999998877    56678888777553

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.53  E-value=6.2e-14  Score=80.01  Aligned_cols=61  Identities=16%  Similarity=0.128  Sum_probs=52.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ++.+|||+|||+|..+..++++   +.+|+++|+|+.+++.++++....+     ..++++...|..+.
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~-----~~~~~~~~~d~~~~   90 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEG-----LDNLQTDLVDLNTL   90 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT-----CTTEEEEECCTTTC
T ss_pred             CCCcEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhcc-----ccchhhhheecccc
Confidence            3459999999999999999986   3479999999999999999998876     56788888887653

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.53  E-value=3.8e-15  Score=86.95  Aligned_cols=85  Identities=38%  Similarity=0.660  Sum_probs=66.4

Q ss_pred             cHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCC-----CceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEE
Q psy8023           2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGS-----NGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEP   76 (88)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~-----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~   76 (88)
                      +++++++.+...+.++.+|||+|||+|+.+..+++..++     ..+|+++|+++++++.|++++...........++.+
T Consensus        66 ~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~  145 (223)
T d1r18a_          66 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI  145 (223)
T ss_dssp             HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred             hHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEE
Confidence            567888888655789999999999999999999887643     348999999999999999987543200001458999


Q ss_pred             eeCCcccccc
Q psy8023          77 QTGEGDIQYL   86 (88)
Q Consensus        77 ~~~d~~~~~~   86 (88)
                      ..+|+.++++
T Consensus       146 ~~~d~~~~~~  155 (223)
T d1r18a_         146 VEGDGRKGYP  155 (223)
T ss_dssp             EESCGGGCCG
T ss_pred             Eecccccccc
Confidence            9999887654

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.53  E-value=4.6e-14  Score=81.36  Aligned_cols=62  Identities=13%  Similarity=0.221  Sum_probs=57.2

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++.|||+|||+|..+..+++.. |+.+++|+|+++.++..+.++..+.+     ..|+.++.+|+..
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~-p~~~~iGiD~~~~~i~~a~~~~~~~~-----l~Nv~~~~~Da~~   90 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSE-----AQNVKLLNIDADT   90 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSC-----CSSEEEECCCGGG
T ss_pred             CCceEEEEEecCcHHHHHHHHhC-CCCcEEEeecchHHHHHHHHHHHHHh-----ccCchhcccchhh
Confidence            45689999999999999999996 88999999999999999999999888     6899999999875

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.6e-14  Score=83.72  Aligned_cols=62  Identities=16%  Similarity=0.064  Sum_probs=53.4

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++.+|||+|||+|.++..++...  ..+|+++|+|+.+++.|++++...+     ..+++++++|+++
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~-----~~~~~f~~~d~~~  120 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEG-----KRVRNYFCCGLQD  120 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGG-----GGEEEEEECCGGG
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhc--CCEEEEeecCHHHhhcccccccccc-----ccccccccccccc
Confidence            456789999999999999887654  3489999999999999999998766     5688999999876

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.51  E-value=7.1e-14  Score=83.69  Aligned_cols=72  Identities=17%  Similarity=0.220  Sum_probs=59.5

Q ss_pred             HHHHHhhc---CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023           6 ALELLKDN---LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus         6 ~~~~~~~~---~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      .++.+.+.   +.++.+|||+|||+|.++..+++..+++.+|+|+|+|+.+++.|+++....+      .+++|..+|+.
T Consensus        14 ~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~------~~~~f~~~d~~   87 (281)
T d2gh1a1          14 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP------YDSEFLEGDAT   87 (281)
T ss_dssp             HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS------SEEEEEESCTT
T ss_pred             HHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc------ccccccccccc
Confidence            34455432   4567899999999999999999987666899999999999999999998765      37889999976


Q ss_pred             c
Q psy8023          83 I   83 (88)
Q Consensus        83 ~   83 (88)
                      +
T Consensus        88 ~   88 (281)
T d2gh1a1          88 E   88 (281)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.51  E-value=6.7e-14  Score=77.28  Aligned_cols=74  Identities=19%  Similarity=0.140  Sum_probs=61.0

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .++.++..+ -++.+|||+|||+|.+++..+.+.  ..+|+++|.++.+++.+++++..++    ...+++++++|+.+.
T Consensus         4 ~~fn~l~~~-~~g~~vlDl~~GtG~~~iea~~rg--a~~v~~ve~~~~a~~~~~~n~~~~~----~~~~~~ii~~D~~~~   76 (152)
T d2esra1           4 AIFNMIGPY-FNGGRVLDLFAGSGGLAIEAVSRG--MSAAVLVEKNRKAQAIIQDNIIMTK----AENRFTLLKMEAERA   76 (152)
T ss_dssp             HHHHHHCSC-CCSCEEEEETCTTCHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHHTTT----CGGGEEEECSCHHHH
T ss_pred             HHHHHHHhh-CCCCeEEEcCCccCHHHHHHHHhC--cceeeeehhchhhhhhhhhhhhhcc----cccchhhhccccccc
Confidence            445566543 368899999999999999887763  2489999999999999999999887    567899999998764


Q ss_pred             c
Q psy8023          85 Y   85 (88)
Q Consensus        85 ~   85 (88)
                      +
T Consensus        77 l   77 (152)
T d2esra1          77 I   77 (152)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.51  E-value=7.5e-14  Score=81.59  Aligned_cols=62  Identities=29%  Similarity=0.510  Sum_probs=53.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      +.++++|||+|||+|.++.++++..++.++|+++|+++.+++.++++.+..+       ++..+..|+.
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~-------~~~~i~~d~~  132 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR-------NIVPILGDAT  132 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT-------TEEEEECCTT
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC-------CceEEEEECC
Confidence            5689999999999999999999999899999999999999999999876543       4555555554

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.51  E-value=1.5e-13  Score=78.55  Aligned_cols=74  Identities=15%  Similarity=0.170  Sum_probs=64.5

Q ss_pred             CcHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCC
Q psy8023           1 MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGE   80 (88)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d   80 (88)
                      +|..+++.++.  ..++..++|++||+|+.+..+++.. ++++++|+|.++.+++.++++.+.++      .++.+++++
T Consensus        10 Vll~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~------~r~~~~~~~   80 (192)
T d1m6ya2          10 VMVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFS------DRVSLFKVS   80 (192)
T ss_dssp             TTHHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGT------TTEEEEECC
T ss_pred             hHHHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhcccc------ccccchhHH
Confidence            57788888887  6788899999999999999999997 68999999999999999999998754      568888877


Q ss_pred             ccc
Q psy8023          81 GDI   83 (88)
Q Consensus        81 ~~~   83 (88)
                      ..+
T Consensus        81 f~~   83 (192)
T d1m6ya2          81 YRE   83 (192)
T ss_dssp             GGG
T ss_pred             Hhh
Confidence            543

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.51  E-value=9.9e-14  Score=83.63  Aligned_cols=63  Identities=19%  Similarity=0.204  Sum_probs=56.5

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      +.++.+|||+|||.|.++..+++..  +++++|+++|++.++.+++++...+    ...++++...|..
T Consensus        59 l~~G~~VLDiGCG~G~~~~~~a~~~--g~~v~git~s~~q~~~a~~~~~~~~----l~~~v~~~~~d~~  121 (291)
T d1kpia_          59 LEPGMTLLDIGCGWGSTMRHAVAEY--DVNVIGLTLSENQYAHDKAMFDEVD----SPRRKEVRIQGWE  121 (291)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHSC----CSSCEEEEECCGG
T ss_pred             CCCCCEEEEecCcchHHHHHHHHhc--CcceeeccchHHHHHHHHHHHHhhc----cchhhhhhhhccc
Confidence            6789999999999999999999987  4699999999999999999999877    6678888888764

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.46  E-value=2.9e-13  Score=77.98  Aligned_cols=62  Identities=13%  Similarity=0.177  Sum_probs=56.9

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..+.|||+|||+|..+..+++.. |+..++|+|+++.++..|.+++.+.+     ..|+.++.+|+.+
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~-----l~Ni~~~~~da~~   92 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVG-----VPNIKLLWVDGSD   92 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHC-----CSSEEEEECCSSC
T ss_pred             CCCeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhc-----cccceeeecCHHH
Confidence            45689999999999999999996 88999999999999999999999887     7899999999876

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4e-13  Score=82.03  Aligned_cols=76  Identities=13%  Similarity=0.090  Sum_probs=57.9

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCC---C-CCCCcceEEeeCC
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNP---E-LLPNIKFEPQTGE   80 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---~-~~~~~~~~~~~~d   80 (88)
                      .+++.+.  +.++.+|||+|||+|..+..++... +..+++|+|+++.+++.|+++.+....   . .....+++++++|
T Consensus       142 ~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd  218 (328)
T d1nw3a_         142 QMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  218 (328)
T ss_dssp             HHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred             HHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence            3444443  6788999999999999999999886 556899999999999999887654210   0 0125689999999


Q ss_pred             ccc
Q psy8023          81 GDI   83 (88)
Q Consensus        81 ~~~   83 (88)
                      +.+
T Consensus       219 ~~~  221 (328)
T d1nw3a_         219 FLS  221 (328)
T ss_dssp             TTS
T ss_pred             ccc
Confidence            864

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.45  E-value=2.9e-13  Score=82.55  Aligned_cols=72  Identities=18%  Similarity=0.177  Sum_probs=61.8

Q ss_pred             HHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023           7 LELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus         7 ~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ..++...+.++++|||+|||+|.+++.++...  ..+|+++|+++.+++.+++|++.++    ...+++++++|+.+.
T Consensus       136 r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~g--a~~V~~vD~s~~al~~a~~N~~~ng----l~~~~~~~~~d~~~~  207 (324)
T d2as0a2         136 RLALEKWVQPGDRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKLNG----VEDRMKFIVGSAFEE  207 (324)
T ss_dssp             HHHHGGGCCTTCEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTT----CGGGEEEEESCHHHH
T ss_pred             HHHHHhhcCCCCeeecccCcccchhhhhhhcC--CcEEEeecCCHHHHHHHHHHHHHcC----CCccceeeechhhhh
Confidence            34555667889999999999999999988763  3489999999999999999999998    557899999998753

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.1e-13  Score=80.61  Aligned_cols=61  Identities=15%  Similarity=0.158  Sum_probs=53.7

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      ..++||+|||+|.+++.+++.. ++.+++|+|+++.+++.|++|++.++    ...++.+...+..
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~A~~N~~~n~----l~~~~~~~~~~~~  122 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNN----LSDLIKVVKVPQK  122 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECCTT
T ss_pred             cceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHHHHHHHHHhC----CCcceeeeeeccH
Confidence            4589999999999999999997 78999999999999999999999988    6677887765543

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.43  E-value=7.1e-13  Score=78.18  Aligned_cols=67  Identities=16%  Similarity=0.184  Sum_probs=58.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      ..+..+|||+|||+|..+..+++.. |+.+++++|+ +.+++.+++++...+    ...+++++.+|..+..|
T Consensus        78 ~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~----~~~rv~~~~~D~~~~~~  144 (253)
T d1tw3a2          78 WTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEG----LSDRVDVVEGDFFEPLP  144 (253)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTT----CTTTEEEEECCTTSCCS
T ss_pred             CccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhh----cccchhhccccchhhcc
Confidence            3556799999999999999999997 7889999998 568999999998877    67899999999877554

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.9e-13  Score=77.46  Aligned_cols=67  Identities=16%  Similarity=-0.051  Sum_probs=52.5

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCC---------C---CCCCcceEEeeCCc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNP---------E---LLPNIKFEPQTGEG   81 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~---------~---~~~~~~~~~~~~d~   81 (88)
                      .+++.+|||+|||+|..+..+++.   +.+|+|+|+|+.+++.++++......         .   .....++++.++|.
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~  119 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSI  119 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcch
Confidence            467789999999999999999986   45899999999999999987654210         0   01235788999987


Q ss_pred             cc
Q psy8023          82 DI   83 (88)
Q Consensus        82 ~~   83 (88)
                      .+
T Consensus       120 ~~  121 (229)
T d2bzga1         120 FD  121 (229)
T ss_dssp             GG
T ss_pred             hh
Confidence            65

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.42  E-value=4.7e-13  Score=75.13  Aligned_cols=70  Identities=20%  Similarity=0.171  Sum_probs=55.6

Q ss_pred             HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCC
Q psy8023           4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGE   80 (88)
Q Consensus         4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d   80 (88)
                      +.+..++.....++.+|||+|||+|.+++..+..   +.+++++|.++.+++.+++|++.++    ...++....+|
T Consensus        29 e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~----~~~~v~~~~~d   98 (171)
T d1ws6a1          29 KALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTG----LGARVVALPVE   98 (171)
T ss_dssp             HHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHT----CCCEEECSCHH
T ss_pred             HHHHHHhhccccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhc----cccceeeeehh
Confidence            3456667767788999999999999999987775   3479999999999999999999887    44445444444

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=6.1e-13  Score=81.69  Aligned_cols=72  Identities=26%  Similarity=0.299  Sum_probs=60.5

Q ss_pred             HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +.+++++.  ..++.+|||+.||+|.+++.+++..   .+|+|+|.++.+++.|++|.+.++     ..+++|+.+|..+
T Consensus       202 ~~v~~~~~--~~~~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~n~-----i~n~~~~~~~~~~  271 (358)
T d1uwva2         202 ARALEWLD--VQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNG-----LQNVTFYHENLEE  271 (358)
T ss_dssp             HHHHHHHT--CCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCTTS
T ss_pred             HHHHHhhc--cCCCceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHhcc-----cccceeeecchhh
Confidence            33444443  4567899999999999999999864   379999999999999999999988     7899999999887


Q ss_pred             cc
Q psy8023          84 QY   85 (88)
Q Consensus        84 ~~   85 (88)
                      .+
T Consensus       272 ~~  273 (358)
T d1uwva2         272 DV  273 (358)
T ss_dssp             CC
T ss_pred             hh
Confidence            54

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.42  E-value=8e-13  Score=75.90  Aligned_cols=60  Identities=28%  Similarity=0.270  Sum_probs=50.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +|++|||+|||+|.+++.++...  ..+|+++|+++.+++.+++|++.++      .+.++..+|..+
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g--~~~v~~vdi~~~~~~~a~~N~~~~~------~~~~~~~~d~~~  105 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLG--AKEVICVEVDKEAVDVLIENLGEFK------GKFKVFIGDVSE  105 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHTGGGT------TSEEEEESCGGG
T ss_pred             CCCEEEECcCcchHHHHHHHHcC--CCEEEEEcCcHHHHHHHHHHHHHcC------CCceEEECchhh
Confidence            67899999999999999877652  3589999999999999999998765      457788888665

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=6.1e-13  Score=77.04  Aligned_cols=67  Identities=18%  Similarity=0.230  Sum_probs=60.2

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      +.++|||+|||+|..++.+++.++++++++++|+++...+.++++++..+    ...+++++.+|+.+.+|
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~g----l~~~i~l~~Gd~~e~l~  122 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAG----LQDKVTILNGASQDLIP  122 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEESCHHHHGG
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcC----CCccceeeecccccccc
Confidence            44699999999999999999988778999999999999999999999888    66789999999887543

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=1.4e-12  Score=77.57  Aligned_cols=67  Identities=21%  Similarity=0.314  Sum_probs=52.4

Q ss_pred             HHHHHhhcC-CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           6 ALELLKDNL-KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         6 ~~~~~~~~~-~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +...+.... .++.+|||+|||+|.++..+++.. ++.+++|+|+|+.+++.|+++.          .++++.++|+.+
T Consensus        73 ~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~----------~~~~~~~~d~~~  140 (268)
T d1p91a_          73 IVAQLRERLDDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY----------PQVTFCVASSHR  140 (268)
T ss_dssp             HHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC----------TTSEEEECCTTS
T ss_pred             HHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhccc----------ccccceeeehhh
Confidence            333444333 466799999999999999999986 7789999999999999998753          246778888754

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.39  E-value=1.4e-12  Score=75.57  Aligned_cols=69  Identities=14%  Similarity=0.165  Sum_probs=53.2

Q ss_pred             cHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023           2 MNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG   81 (88)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (88)
                      |+...++.+.... ++.+|||+|||+|.++..+++..   .+|+|+|+|+++++.|+++..         .+++++.+|.
T Consensus         7 ~~~~~~~~~~~~~-~~~~VLDiGcG~G~~~~~l~~~g---~~v~giD~s~~~i~~a~~~~~---------~~~~~~~~~~   73 (225)
T d2p7ia1           7 MHPFMVRAFTPFF-RPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLK---------DGITYIHSRF   73 (225)
T ss_dssp             HHHHHHHHHGGGC-CSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSC---------SCEEEEESCG
T ss_pred             HHHHHHHHhhhhC-CCCcEEEEeCCCcHHHHHHHHcC---CeEEEEeCcHHHhhhhhcccc---------cccccccccc
Confidence            4556666766554 45689999999999999988763   369999999999999987643         2477777776


Q ss_pred             cc
Q psy8023          82 DI   83 (88)
Q Consensus        82 ~~   83 (88)
                      .+
T Consensus        74 ~~   75 (225)
T d2p7ia1          74 ED   75 (225)
T ss_dssp             GG
T ss_pred             cc
Confidence            54

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.37  E-value=1.2e-12  Score=76.06  Aligned_cols=51  Identities=27%  Similarity=0.385  Sum_probs=43.3

Q ss_pred             HHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023           9 LLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus         9 ~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      .+....+++.+|||+|||+|..+..+++.   +.+|+|+|+|+.+++.|+++..
T Consensus        35 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~   85 (246)
T d2avna1          35 FLEEYLKNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV   85 (246)
T ss_dssp             HHHHHCCSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC
T ss_pred             HHHHhcCCCCEEEEECCCCchhccccccc---ceEEEEeecccccccccccccc
Confidence            34445677889999999999999999875   4589999999999999998753

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.36  E-value=3.7e-12  Score=75.30  Aligned_cols=66  Identities=20%  Similarity=0.124  Sum_probs=58.4

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      ....+|||+|||+|..+..+++.+ |+.+++++|+ +++++.+++++...+    ..++++++.+|..+..|
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~----~~~ri~~~~~d~~~~~p  145 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAG----LADRVTVAEGDFFKPLP  145 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTT----CTTTEEEEECCTTSCCS
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcC----Ccceeeeeeeecccccc
Confidence            456799999999999999999997 7889999998 779999999998877    67789999999887665

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.36  E-value=2.6e-12  Score=75.89  Aligned_cols=60  Identities=13%  Similarity=0.098  Sum_probs=49.6

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+..+|||+|||+|.++..++....  .+|+++|.|+.+++.|+++....       .++++.++|+.+
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~~-------~~~~~~~~d~~~  151 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGM-------PVGKFILASMET  151 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTS-------SEEEEEESCGGG
T ss_pred             CCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhcccccc-------ccceeEEccccc
Confidence            3567999999999999999887652  37999999999999999887643       467888888765

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.5e-12  Score=74.70  Aligned_cols=76  Identities=20%  Similarity=0.212  Sum_probs=64.3

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +++..+.. ....++|||+|||+|+.++.++...+++++++++|.+++..+.|+++++..+    ...+++++.+|+.+.
T Consensus        49 ~lL~~L~~-~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag----~~~~i~~~~Gda~e~  123 (219)
T d2avda1          49 QLLANLAR-LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE----AEHKIDLRLKPALET  123 (219)
T ss_dssp             HHHHHHHH-HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT----CTTTEEEEESCHHHH
T ss_pred             HHHHHHHH-ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcC----ccceEEEEEeehhhc
Confidence            34444443 3456799999999999999999998778999999999999999999999988    678899999998764


Q ss_pred             c
Q psy8023          85 Y   85 (88)
Q Consensus        85 ~   85 (88)
                      +
T Consensus       124 l  124 (219)
T d2avda1         124 L  124 (219)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.9e-12  Score=75.41  Aligned_cols=61  Identities=20%  Similarity=0.149  Sum_probs=49.2

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      ..++.+|||+|||+|..+..+++..  ..+++++|+|+.+++.|+++.....      .++.++.+|+.
T Consensus        51 ~~~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~------~~~~~~~~~~~  111 (229)
T d1zx0a1          51 SSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLWE  111 (229)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCHH
T ss_pred             ccCCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhcc------ccccccccccc
Confidence            3678899999999999999998863  4589999999999999999987644      44555655543

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.35  E-value=3.7e-12  Score=77.17  Aligned_cols=64  Identities=16%  Similarity=0.053  Sum_probs=55.4

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCC-CcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLP-NIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~d~~~~   84 (88)
                      ..++.+|||++||+|.+++.++..   +.+|+++|.|+.+++.|++|+..++    . ..+++|+++|+.+.
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~a~~N~~ln~----~~~~~~~~i~~D~~~~  194 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAG----LEQAPIRWICEDAMKF  194 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHT----CTTSCEEEECSCHHHH
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHHHHHhhhhhc----ccCCcEEEEeCCHHHh
Confidence            457889999999999999998875   3489999999999999999999887    3 34799999998764

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=2.8e-12  Score=80.16  Aligned_cols=57  Identities=19%  Similarity=0.251  Sum_probs=48.2

Q ss_pred             HHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhh
Q psy8023           4 ARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ   63 (88)
Q Consensus         4 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~   63 (88)
                      ..+++.+.  +.+++++||+|||+|..+..++... +..+++|+|+++.+++.|+++.+.
T Consensus       206 ~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~-g~~~v~GIDiS~~~i~~Ak~~~~e  262 (406)
T d1u2za_         206 SDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEE  262 (406)
T ss_dssp             HHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHH
T ss_pred             HHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHH
Confidence            34444444  7889999999999999999999987 456899999999999999988764

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.34  E-value=2.2e-12  Score=73.87  Aligned_cols=55  Identities=24%  Similarity=0.302  Sum_probs=44.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      +|++|||+|||+|.+++.++...  ..+|+++|+++.+++.|++|...          ++++++|+.
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~g--a~~V~~vDid~~a~~~ar~N~~~----------~~~~~~D~~  102 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNCGG----------VNFMVADVS  102 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHCTT----------SEEEECCGG
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcC--CCcccccccCHHHHHHHHHcccc----------ccEEEEehh
Confidence            68899999999999998877753  34899999999999999998643          456666654

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.34  E-value=8.1e-12  Score=74.51  Aligned_cols=64  Identities=23%  Similarity=0.292  Sum_probs=55.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      +..+++|+|||+|.+++.+++.  ++.+|+++|+|+.+++.|++|+++++    ...++.+..+|..+.+
T Consensus       110 ~~~~vld~g~GsG~i~~~la~~--~~~~v~a~Dis~~Al~~A~~Na~~~~----~~~~~~i~~~~~~~~~  173 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHG----VSDRFFVRKGEFLEPF  173 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTT----CTTSEEEEESSTTGGG
T ss_pred             cccEEEEeeeeeehhhhhhhhc--ccceeeechhhhhHHHHHHHHHHHcC----CCceeEEeeccccccc
Confidence            3468999999999999998864  68899999999999999999999988    5667888888877654

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.32  E-value=6.4e-12  Score=71.09  Aligned_cols=65  Identities=23%  Similarity=0.154  Sum_probs=56.5

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ..++.+|||++||+|.+++..+.+.  ..+|+++|.++.+++.+++|+...+    ...+++++++|+.+.
T Consensus        39 ~~~~~~vLDlfaGsG~~g~ea~srG--a~~v~~ve~~~~a~~~~~~N~~~~~----~~~~~~i~~~D~~~~  103 (182)
T d2fhpa1          39 YFDGGMALDLYSGSGGLAIEAVSRG--MDKSICIEKNFAALKVIKENIAITK----EPEKFEVRKMDANRA  103 (182)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEESCHHHH
T ss_pred             hcCCCEEEEcccccccccceeeecc--hhHHHHHHHHHHHHHHHHHHhhhhh----cccccccccccchhh
Confidence            3468899999999999999988874  3389999999999999999998877    566899999998764

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=99.31  E-value=4.5e-12  Score=74.30  Aligned_cols=69  Identities=20%  Similarity=0.267  Sum_probs=57.2

Q ss_pred             HHHHHHhhc--CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023           5 RALELLKDN--LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus         5 ~~~~~~~~~--~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      ..++.+...  +.++.+|||+|||+|.++..+++..   .+++++|+++.+++.++++...       ..+++++++|+.
T Consensus         8 ~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~---~~v~avE~D~~l~~~l~~~~~~-------~~n~~i~~~D~l   77 (235)
T d1qama_           8 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD-------HDNFQVLNKDIL   77 (235)
T ss_dssp             HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT-------CCSEEEECCCGG
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCc---CceEEEeeccchHHHHHHHhhc-------ccchhhhhhhhh
Confidence            445555554  3578899999999999999999873   3799999999999999987764       458999999998


Q ss_pred             c
Q psy8023          83 I   83 (88)
Q Consensus        83 ~   83 (88)
                      +
T Consensus        78 ~   78 (235)
T d1qama_          78 Q   78 (235)
T ss_dssp             G
T ss_pred             h
Confidence            7

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=4.9e-12  Score=75.75  Aligned_cols=48  Identities=19%  Similarity=0.257  Sum_probs=41.5

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      .++.+|||+|||+|..+..+++.   +.+|+|+|+|+.|++.|+++....+
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~  102 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRR  102 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             cCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcc
Confidence            34679999999999999999986   3589999999999999999876543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.30  E-value=6.8e-12  Score=76.35  Aligned_cols=62  Identities=19%  Similarity=0.234  Sum_probs=53.0

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++++|||+|||+|.++..+++..  ..+|+++|.++ +++.++++.+.++    ...+++++.+|+.+
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~G--a~~V~avd~s~-~~~~a~~~~~~~~----~~~~i~~i~~~~~~   98 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHG--AKHVIGVDMSS-IIEMAKELVELNG----FSDKITLLRGKLED   98 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTC--CSEEEEEESST-HHHHHHHHHHHTT----CTTTEEEEESCTTT
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhC--CCEEEEEeCCH-HHHHHHHHHHHhC----ccccceEEEeehhh
Confidence            478899999999999999888764  34899999997 6788999988887    67789999998765

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.29  E-value=2.5e-12  Score=78.20  Aligned_cols=61  Identities=21%  Similarity=0.054  Sum_probs=54.5

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++++|||+|||+|.+++.++..   ..+|+++|+|+.+++.+++|++.++     ..+++++++|+.+
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ng-----l~~~~~i~~d~~~  204 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNG-----LGNVRVLEANAFD  204 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTT-----CTTEEEEESCHHH
T ss_pred             hCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcC-----CCCcceeeccHHH
Confidence            46889999999999999998764   3489999999999999999999998     5789999999865

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=6.6e-12  Score=76.11  Aligned_cols=62  Identities=19%  Similarity=0.184  Sum_probs=51.8

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .++++|||+|||+|.+++.+++..  ..+|+++|.++. ...++++.+.++    ...+++++++|+.+
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~G--a~~V~avd~s~~-~~~a~~~~~~n~----~~~~v~~~~~~~~~   93 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAG--ARKVIGIECSSI-SDYAVKIVKANK----LDHVVTIIKGKVEE   93 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECSTT-HHHHHHHHHHTT----CTTTEEEEESCTTT
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhC--CCEEEEEcCcHH-HhhhhhHHHHhC----CccccceEeccHHH
Confidence            478899999999999999888863  248999999984 577888888777    67789999999876

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.28  E-value=9.6e-12  Score=75.62  Aligned_cols=72  Identities=13%  Similarity=0.002  Sum_probs=59.8

Q ss_pred             HHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCC-CcceEEeeCCccccc
Q psy8023           8 ELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLP-NIKFEPQTGEGDIQY   85 (88)
Q Consensus         8 ~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~d~~~~~   85 (88)
                      .++.....++++|||++||+|.+++..+...  ..+|+++|+|+.+++.+++|+..|+    . ..+++++.+|+.+.+
T Consensus       136 ~~l~~~~~~g~~VLdlf~~~G~~sl~aa~~g--a~~V~~vD~s~~a~~~a~~N~~~n~----l~~~~~~~i~~d~~~~l  208 (317)
T d2b78a2         136 NELINGSAAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANH----LDMANHQLVVMDVFDYF  208 (317)
T ss_dssp             HHHHHTTTBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTT----CCCTTEEEEESCHHHHH
T ss_pred             HHHHHHhhCCCceeecCCCCcHHHHHHHhCC--CceEEEecCCHHHHHHHHHHHHHhc----ccCcceEEEEccHHHHH
Confidence            4444556789999999999999999877642  4479999999999999999999887    3 368999999997643

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.6e-11  Score=73.18  Aligned_cols=63  Identities=19%  Similarity=0.149  Sum_probs=51.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++++|||+|||+|.++..+++..  ..+|+++|.++.+. .++++...++    ...++.++++|+.+
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~G--a~~V~aid~s~~~~-~a~~~~~~~~----~~~~i~~~~~~~~~   95 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAG--AKKVLGVDQSEILY-QAMDIIRLNK----LEDTITLIKGKIEE   95 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEESSTHHH-HHHHHHHHTT----CTTTEEEEESCTTT
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcC--CCEEEEEeCHHHHH-HHHHHHHHhC----CCccceEEEeeHHH
Confidence            3578899999999999999988874  24899999999875 4566666666    57889999998876

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=1.2e-11  Score=70.00  Aligned_cols=72  Identities=18%  Similarity=0.006  Sum_probs=58.0

Q ss_pred             HHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023           6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus         6 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      +...+... -++.+|||++||+|.+++..+.+.  ..+|+++|.++.+++.+++|+...+     ..+++++.+|+.+.+
T Consensus        34 lfn~l~~~-~~~~~vLDlfaGsG~~giealsrG--a~~v~~VE~~~~a~~~~k~N~~~~~-----~~~~~ii~~d~~~~l  105 (183)
T d2fpoa1          34 LFNWLAPV-IVDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLK-----AGNARVVNSNAMSFL  105 (183)
T ss_dssp             HHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTT-----CCSEEEECSCHHHHH
T ss_pred             HHhhhhcc-cchhhhhhhhccccceeeeEEecC--cceeEEEEEeechhhHHHHHHhhcc-----ccceeeeeecccccc
Confidence            34444332 366799999999999999888874  2389999999999999999998876     577899999987643

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.26  E-value=1.1e-11  Score=72.25  Aligned_cols=75  Identities=19%  Similarity=0.235  Sum_probs=64.0

Q ss_pred             HHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023           6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus         6 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      ++..+.. ....++|||+|+++|+.++.++...+++++++.+|.+++..+.|++++++.+    ..++++++.+|+.+.+
T Consensus        50 ~L~~L~~-~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g----~~~~i~~~~g~a~~~L  124 (227)
T d1susa1          50 FLSMLLK-LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG----VDHKIDFREGPALPVL  124 (227)
T ss_dssp             HHHHHHH-HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT----CGGGEEEEESCHHHHH
T ss_pred             HHHHHHH-hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhc----cccceeeeehHHHHHH
Confidence            4444443 2356799999999999999999998778999999999999999999999988    6778999999997654

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.8e-12  Score=74.12  Aligned_cols=50  Identities=16%  Similarity=0.097  Sum_probs=41.4

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      ..++.+|||+|||+|..+..++...  ..+|+|+|+|+.+++.|+++++...
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~~~i~~a~~~~~~~~   98 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEP   98 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCT
T ss_pred             CCCCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCHHHHHHHHHHHhhcc
Confidence            3567799999999999887766543  3479999999999999999987654

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=1.3e-10  Score=68.63  Aligned_cols=60  Identities=17%  Similarity=0.183  Sum_probs=51.4

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++..|+|+|||+|.++..+++..   .+++++|+++.+++..++....       ..+++++.+|+.+
T Consensus        19 ~~~~d~vlEIGpG~G~LT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~-------~~~~~ii~~D~l~   78 (252)
T d1qyra_          19 PQKGQAMVEIGPGLAALTEPVGERL---DQLTVIELDRDLAARLQTHPFL-------GPKLTIYQQDAMT   78 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHHHHHTTC---SCEEEECCCHHHHHHHHTCTTT-------GGGEEEECSCGGG
T ss_pred             CCCCCEEEEECCCchHHHHHHHccC---CceEEEEeccchhHHHHHHhhh-------ccchhHHhhhhhh
Confidence            4678899999999999999999863   3699999999999999886543       4589999999986

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.4e-10  Score=68.25  Aligned_cols=71  Identities=25%  Similarity=0.368  Sum_probs=58.4

Q ss_pred             HHHHHhhc--CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           6 ALELLKDN--LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         6 ~~~~~~~~--~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++.+...  ..++..|||+|+|.|.++..+++..   .+++++|+++.+++..++.+..+.    ...+++++.+|+.+
T Consensus         9 i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~---~~v~aiE~D~~l~~~L~~~~~~~~----~~~~~~~i~~D~l~   81 (278)
T d1zq9a1           9 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTP----VASKLQVLVGDVLK   81 (278)
T ss_dssp             HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTST----TGGGEEEEESCTTT
T ss_pred             HHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcC---CcEEEEEEccchhHHHHHHHhhhc----cccchhhhHHHHhh
Confidence            34444433  4577899999999999999999873   379999999999999999987655    45789999999886

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=99.07  E-value=3.8e-12  Score=74.99  Aligned_cols=60  Identities=25%  Similarity=0.347  Sum_probs=50.6

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++..|||+|||+|.++..+++..   .+++++|+++.+++.+++++..       ..+++++++|+.+
T Consensus        27 ~~~~d~VLEIGpG~G~LT~~L~~~~---~~v~aIE~D~~l~~~l~~~~~~-------~~n~~ii~~D~l~   86 (245)
T d1yuba_          27 LKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKL-------NTRVTLIHQDILQ   86 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTT-------CSEEEECCSCCTT
T ss_pred             CCCCCeEEEECCCccHHHHHHHhhc---CceeEeeecccchhhhhhhhhh-------ccchhhhhhhhhc
Confidence            4677899999999999999999873   3799999999888877766543       4589999999886

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.06  E-value=3.2e-10  Score=64.47  Aligned_cols=39  Identities=18%  Similarity=0.289  Sum_probs=32.1

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      .++.+|||+|||+|.++..+.       +++|+|+|+.+++.++++
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~   73 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR   73 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT
T ss_pred             CCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc
Confidence            456689999999999866552       378999999999999874

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.6e-10  Score=66.16  Aligned_cols=48  Identities=23%  Similarity=0.209  Sum_probs=39.3

Q ss_pred             CeEEEecCCCChHHHHHHHHh-----CCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          18 AKVLDIGSGSGYLTACFADLV-----GSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~-----~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      .+|||+|||+|.++..++..+     +...+++++|+|+.+++.+++++....
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~   94 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS   94 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc
Confidence            379999999999988887653     123468999999999999999987643

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=5.9e-10  Score=65.84  Aligned_cols=49  Identities=20%  Similarity=0.138  Sum_probs=39.3

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG   64 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~   64 (88)
                      ..++.++||+|||+|..+...+...  ..+|+++|+|+.+++.++++++..
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~  100 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEE  100 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTC
T ss_pred             CCCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcC
Confidence            3467899999999998776555543  238999999999999999987653

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.90  E-value=6.7e-09  Score=58.43  Aligned_cols=73  Identities=21%  Similarity=0.035  Sum_probs=55.2

Q ss_pred             HHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023           5 RALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus         5 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+...+...+ ++.+|||++||+|.+++..+.+.  -.+|+.+|.++.+++..++|++..+.   ......+...|..+
T Consensus        33 alFn~l~~~~-~~~~vLDlFaGsG~~glEalSRG--A~~v~fVE~~~~a~~~ik~Ni~~l~~---~~~~~~~~~~d~~~  105 (183)
T d2ifta1          33 TLFNWLMPYI-HQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKC---SSEQAEVINQSSLD  105 (183)
T ss_dssp             HHHHHHHHHH-TTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTC---CTTTEEEECSCHHH
T ss_pred             HHHHHhhhhc-ccceEeecccCccceeeeeeeec--ceeeEEeecccchhhhHhhHHhhhcc---cccccccccccccc
Confidence            3444444322 66799999999999999999885  34899999999999999999987651   13356677776554

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.84  E-value=5.8e-09  Score=63.10  Aligned_cols=70  Identities=10%  Similarity=0.092  Sum_probs=55.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .+..++||.+|.|.|..+..+++.. +..+++.+|+++.+++.+++.+...+.......+++++.+|+.+.
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~  144 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY  144 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHH
Confidence            4566799999999999999888774 667999999999999999998854321112356888888888763

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=3.3e-08  Score=59.25  Aligned_cols=65  Identities=20%  Similarity=0.194  Sum_probs=58.8

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|+|.|+-+..++...++.++++++|+++.-++..++++++.+     ..++.+...|...
T Consensus        92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g-----~~~~~~~~~d~~~  156 (293)
T d2b9ea1          92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG-----VSCCELAEEDFLA  156 (293)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCGGG
T ss_pred             CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcC-----ccceeeeehhhhh
Confidence            5678899999999999999999988778899999999999999999999988     6788888888764

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=1.8e-08  Score=57.76  Aligned_cols=63  Identities=14%  Similarity=0.232  Sum_probs=55.9

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      ++.+++|+|||.|.-++.++-.. |+.+++.+|.+..-+.+.++.....+     ..++++++..+++.
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~-p~~~~~Lves~~KK~~FL~~~~~~L~-----L~nv~v~~~R~E~~  127 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELK-----LENIEPVQSRVEEF  127 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTT-----CSSEEEEECCTTTS
T ss_pred             cCCceeeeeccCCceeeehhhhc-ccceEEEEecchHHHHHHHHHHHHcC-----Ccceeeeccchhhh
Confidence            45689999999999999999886 78999999999999999999998877     67899888887763

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.81  E-value=4.6e-08  Score=54.99  Aligned_cols=55  Identities=22%  Similarity=0.319  Sum_probs=48.3

Q ss_pred             CcHHHHHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023           1 MMNARALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      +|..+++..+.  +.++..++|.++|.|+.+..+++.   +++|+|+|.++.+++.+++.
T Consensus         5 Vll~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~   59 (182)
T d1wg8a2           5 VLYQEALDLLA--VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL   59 (182)
T ss_dssp             TTHHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT
T ss_pred             hHHHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc
Confidence            57788888887  678899999999999999999885   56899999999999998874

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.69  E-value=4.7e-08  Score=59.02  Aligned_cols=51  Identities=12%  Similarity=0.182  Sum_probs=42.0

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhC----CCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVG----SNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~----~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      .++.+|+|.|||+|.+...+.+++.    ...+++|+|+++.+++.|+.+...++
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~  170 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR  170 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh
Confidence            4556899999999999999877542    34479999999999999998887654

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.65  E-value=1.1e-07  Score=56.43  Aligned_cols=68  Identities=24%  Similarity=0.155  Sum_probs=52.9

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCC-----CCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPE-----LLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~d~~~   83 (88)
                      .++.++||.+|.|.|..+..+.+.  +..+++.+|+++.+++.+++.+......     .....+++++.+|+.+
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~--~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~  142 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFE  142 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHH
T ss_pred             CCCCceEEEecCCchHHHHHHHHh--CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHH
Confidence            466789999999999999888775  3468999999999999999877543210     0125688999998865

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.59  E-value=8.8e-08  Score=57.46  Aligned_cols=70  Identities=19%  Similarity=0.074  Sum_probs=54.9

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (88)
                      -+..++||-+|.|.|..+..+++.. +..+++++|+++.+++.+++.+..+... ....+++++.+|+.+.+
T Consensus        87 ~~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~~-~~d~rv~v~~~Da~~~l  156 (295)
T d1inla_          87 HPNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCG-FDDPRAEIVIANGAEYV  156 (295)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESCHHHHG
T ss_pred             CCCCceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhccc-ccCCCcEEEhhhHHHHH
Confidence            3566799999999999998888864 5678999999999999999987653211 12468888888887643

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.59  E-value=1.4e-07  Score=55.08  Aligned_cols=59  Identities=17%  Similarity=0.126  Sum_probs=47.4

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      ....+|+|+|||+|..+..+++++ |+.+++..|+.+ .+       ....    ...+++++.+|..+.+|
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-vi-------~~~~----~~~ri~~~~gd~~~~~p  138 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKY-PLIKGINFDLPQ-VI-------ENAP----PLSGIEHVGGDMFASVP  138 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECHH-HH-------TTCC----CCTTEEEEECCTTTCCC
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecchh-hh-------hccC----CCCCeEEecCCcccccc
Confidence            345799999999999999999997 889999999843 32       2222    36789999999988765

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.57  E-value=6e-07  Score=54.13  Aligned_cols=65  Identities=22%  Similarity=0.240  Sum_probs=57.5

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++.+|||+|+|.|+=+..++......+.+++.|.++.-++..+++.++.+     ..++.+...|...
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~-----~~~i~~~~~d~~~  178 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG-----VLNVILFHSSSLH  178 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT-----CCSEEEESSCGGG
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH-----hhccccccccccc
Confidence            5788999999999999999999998778899999999999999999999988     5677777777653

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.55  E-value=2.5e-07  Score=54.89  Aligned_cols=69  Identities=17%  Similarity=0.207  Sum_probs=55.2

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .++.++||-+|.|.|..+..+.++. +..+++.+|+++..++.|++.+..+.. .....+++++.+|+...
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~-~~~~i~~VEID~~Vi~~a~~~~~~~~~-~~~d~r~~i~~~D~~~~  141 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAG-KLDDPRVDVQVDDGFMH  141 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHT-TTTSTTEEEEESCSHHH
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcC-CcceEEEecCCHHHHHHHHHhChhhcc-cccCCCeEEEechHHHH
Confidence            4567899999999999999988874 567999999999999999998865331 12356888888887653

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.52  E-value=1.5e-07  Score=53.57  Aligned_cols=45  Identities=22%  Similarity=0.380  Sum_probs=37.5

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTH   58 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~   58 (88)
                      .+++.+|||.|||+|.+...+.+......+++++|+++.++..++
T Consensus        17 ~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~   61 (223)
T d2ih2a1          17 APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP   61 (223)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT
T ss_pred             CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc
Confidence            456789999999999999999888766778999999987655443

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.51  E-value=2.5e-07  Score=53.89  Aligned_cols=58  Identities=12%  Similarity=0.114  Sum_probs=46.9

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccccccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYLL   87 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (88)
                      ..+|+|+|||+|..+..+++.+ |+.+++..|+.+. +       ....    ...++++..+|..+.+|.
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~v-i-------~~~~----~~~r~~~~~~d~~~~~P~  139 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPHV-I-------EDAP----SYPGVEHVGGDMFVSIPK  139 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTTT-T-------TTCC----CCTTEEEEECCTTTCCCC
T ss_pred             CcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHHh-h-------hhcc----cCCceEEecccccccCCC
Confidence            4689999999999999999998 8899999999652 1       2222    356899999999887763

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.49  E-value=2.8e-07  Score=55.64  Aligned_cols=69  Identities=20%  Similarity=0.142  Sum_probs=54.8

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .+..++||-+|.|.|..+..+.++. +..+++.+|+++.+++.+++.+..+... ....+++++.+|+.+.
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID~~Vv~~a~~~~~~~~~~-~~dprv~i~i~Da~~~  172 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCG-FSHPKLDLFCGDGFEF  172 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGG-GGCTTEEEECSCHHHH
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcC-CcceEEEEcccHHHHHHHHhhchhhccc-cCCCCeEEEEchHHHH
Confidence            4566799999999999999988864 5568999999999999999988654311 2346888888887653

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2.6e-07  Score=55.14  Aligned_cols=69  Identities=22%  Similarity=0.145  Sum_probs=54.8

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .+..++||-+|.|.|..+..+.+.. +..+++.+|+++.+++.|++.+..+.. .....+++++.+|+.+.
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~-~~~~v~~vEiD~~Vv~~a~~~~~~~~~-~~~d~rv~i~~~Da~~~  144 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAI-GYSSSKLTLHVGDGFEF  144 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHG-GGGCTTEEEEESCHHHH
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcC-CcceeeeccCCHHHHHHHHhhchhhcc-ccCCCCceEEEccHHHH
Confidence            3566799999999999999988774 567999999999999999998854321 11256889999988753

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.45  E-value=3.7e-07  Score=53.29  Aligned_cols=58  Identities=10%  Similarity=0.107  Sum_probs=46.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQYL   86 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (88)
                      ...+|+|+|||+|..+..+++.+ |+.+++..|..+ .++       ..+    ..++++++.+|..+..|
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-vi~-------~~~----~~~rv~~~~gD~f~~~p  137 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETF-PKLKCIVFDRPQ-VVE-------NLS----GSNNLTYVGGDMFTSIP  137 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECHH-HHT-------TCC----CBTTEEEEECCTTTCCC
T ss_pred             CceEEEEecCCccHHHHHHHHhC-CCCeEEEecCHH-HHH-------hCc----ccCceEEEecCcccCCC
Confidence            34689999999999999999998 789999999843 332       222    35789999999887654

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.44  E-value=5.6e-07  Score=52.44  Aligned_cols=61  Identities=13%  Similarity=0.115  Sum_probs=53.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      +..+++|+|+|.|.-++.++-.. |+.+++.+|.+..-+.+.++.....+     ..++.++++.++
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~-p~~~v~Lves~~KK~~FL~~v~~~L~-----L~n~~i~~~R~E  130 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQ-----LENTTFCHDRAE  130 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHT-----CSSEEEEESCHH
T ss_pred             CCCeEEeecCCCchHHHHHHHhC-CCccceeecchHHHHHHHHHHHHHhC-----CCCcEEEeehhh
Confidence            45789999999999999999886 78999999999999999999888877     677888777654

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=98.40  E-value=8.7e-07  Score=51.17  Aligned_cols=45  Identities=22%  Similarity=0.338  Sum_probs=39.7

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      .++..|||..||+|.++.+..+. +.  +.+|+|++++.++.|++++.
T Consensus       211 ~~gd~VlDpF~GSGTT~~aa~~~-~R--~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         211 NPNDLVLDCFMGSGTTAIVAKKL-GR--NFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHT-TC--EEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCchHHHHHHHHc-CC--eEEEEeCCHHHHHHHHHHHc
Confidence            68889999999999998876665 45  79999999999999999875

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.38  E-value=1.4e-06  Score=52.06  Aligned_cols=69  Identities=19%  Similarity=0.148  Sum_probs=52.8

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      .++.++||-+|-|.|..+..+.+.. +..+++.+|+++.+++.+++.+..+.. .....+++++.+|+.+.
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~~Vi~~~~~~f~~~~~-~~~~~r~~i~~~Da~~~  146 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAI-GYEDPRVNLVIGDGVAF  146 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHG-GGGSTTEEEEESCHHHH
T ss_pred             CCCCcceEEecCCchHHHHHHHhcc-cceeeEEecCCHHHHHHHHHhchhhhc-cccCCCcEEEEccHHHH
Confidence            3566799999999999999988874 556899999999999999998753221 01246777777776653

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=98.37  E-value=9.6e-07  Score=52.33  Aligned_cols=49  Identities=20%  Similarity=0.249  Sum_probs=42.0

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      -+++..|||..||+|.++.+.... +.  +.+|+|++++.++.|++++....
T Consensus       248 s~~gdiVlDpF~GSGTT~~AA~~l-gR--~~Ig~El~~~y~~~a~~Rl~~~~  296 (320)
T d1booa_         248 TEPDDLVVDIFGGSNTTGLVAERE-SR--KWISFEMKPEYVAASAFRFLDNN  296 (320)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHT-TC--EEEEEESCHHHHHHHHGGGSCSC
T ss_pred             ccCCCEEEecCCCCcHHHHHHHHc-CC--cEEEEeCCHHHHHHHHHHHHhcc
Confidence            368899999999999998886665 45  79999999999999999987644

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=1.5e-06  Score=52.55  Aligned_cols=59  Identities=17%  Similarity=0.169  Sum_probs=48.5

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++..|+|+|.|.|.++..+....+ ..+++++|+++...+..++.+.        ..+++++.+|+..
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~-~~~v~~iE~D~~~~~~L~~~~~--------~~~~~ii~~D~l~  101 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFE--------GSPLQILKRDPYD  101 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTT--------TSSCEEECSCTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhcc--------CCCcEEEeCchhh
Confidence            466899999999999999998752 3489999999999999887653        2468888888764

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=3e-06  Score=50.37  Aligned_cols=62  Identities=18%  Similarity=0.177  Sum_probs=52.1

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEG   81 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (88)
                      ..++.+|||+|+|.|+=+..++... .+++++++|.++.-++..++++++.+     ..++.....|.
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~-~~~~i~a~d~~~~R~~~l~~~~~r~g-----~~~~~~~~~~~  161 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLG-----MKATVKQGDGR  161 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTT-----CCCEEEECCTT
T ss_pred             ccccceeEeccCccccchhhhhhhh-hhhhhhhhhcchhhhhhHhhhhhccc-----ccceeeecccc
Confidence            5678899999999999999999875 56899999999999999999999988     44555554443

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.30  E-value=2.3e-06  Score=52.75  Aligned_cols=49  Identities=20%  Similarity=0.119  Sum_probs=44.2

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      ++.+|||..||+|..++..+... +..+|++.|+|+.+++.+++|++.|+
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~-~~~~V~~nDis~~A~~~i~~N~~lN~   93 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNF   93 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEcCCCccHHHHHHHHhC-CCCEEEEecCCHHHHHHHHHHHHhcC
Confidence            56799999999999999988876 45689999999999999999999886

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.25  E-value=1.2e-06  Score=51.26  Aligned_cols=66  Identities=15%  Similarity=0.144  Sum_probs=49.3

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCC----CCCcceEEeeCCccccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPEL----LPNIKFEPQTGEGDIQY   85 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~d~~~~~   85 (88)
                      ..+|||..+|.|..+..++..   +++|+++|-++.+....++.+.+.....    ....+++++++|+.+.+
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L  158 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL  158 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHS
T ss_pred             CCEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHH
Confidence            358999999999999999987   3579999999988777776665432100    01358899999987643

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.24  E-value=3.1e-06  Score=49.34  Aligned_cols=49  Identities=20%  Similarity=0.292  Sum_probs=42.0

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      -.++..|||..+|+|.++.+.... ++  +.+|+|+++..++.|++++....
T Consensus       205 s~~gdiVLDpF~GSGTT~~Aa~~l-gR--~~ig~El~~~y~~~a~~Ri~~~~  253 (279)
T d1eg2a_         205 SHPGSTVLDFFAGSGVTARVAIQE-GR--NSICTDAAPVFKEYYQKQLTFLQ  253 (279)
T ss_dssp             SCTTCEEEETTCTTCHHHHHHHHH-TC--EEEEEESSTHHHHHHHHHHHHC-
T ss_pred             cCCCCEEEecCCCCcHHHHHHHHh-CC--eEEEEeCCHHHHHHHHHHHHHhh
Confidence            368889999999999998887666 45  89999999999999999997643

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=7.7e-06  Score=45.61  Aligned_cols=38  Identities=32%  Similarity=0.713  Sum_probs=34.3

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCH
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIP   51 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~   51 (88)
                      +.++.+|+|+||+.|+++..+.+..++.++++++|+.+
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~   57 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP   57 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc
Confidence            57888999999999999999999887788999999866

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.15  E-value=8.9e-06  Score=50.55  Aligned_cols=66  Identities=15%  Similarity=0.121  Sum_probs=47.9

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCC------------ceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcc
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSN------------GEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGD   82 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~------------~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (88)
                      .++.+|+|.+||+|.+.+.+.++....            ..++|+|+++.+...|+-+...++..   ..+..+..+|..
T Consensus       161 ~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~---~~~~~i~~~d~l  237 (425)
T d2okca1         161 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG---TDRSPIVCEDSL  237 (425)
T ss_dssp             CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC---SSCCSEEECCTT
T ss_pred             cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc---cccceeecCchh
Confidence            456799999999999999988765321            24999999999999999888765511   223445555544


Q ss_pred             c
Q psy8023          83 I   83 (88)
Q Consensus        83 ~   83 (88)
                      +
T Consensus       238 ~  238 (425)
T d2okca1         238 E  238 (425)
T ss_dssp             T
T ss_pred             h
Confidence            3

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.04  E-value=1.7e-05  Score=44.51  Aligned_cols=46  Identities=24%  Similarity=0.247  Sum_probs=33.8

Q ss_pred             CCCeEEEecCCCChHHHHH----HHHhC---CCceEEEEeCCHHHHHHHHHhh
Q psy8023          16 PGAKVLDIGSGSGYLTACF----ADLVG---SNGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l----~~~~~---~~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      +..+||++|||+|.-...+    .+...   ...+++|+|+++.+++.|++..
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~   76 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI   76 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCc
Confidence            4459999999999954443    33221   2347999999999999998554

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.87  E-value=1.7e-05  Score=45.89  Aligned_cols=58  Identities=17%  Similarity=0.189  Sum_probs=41.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV---GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++|||+|++.|+.+..++...   +++++++++|+++.....     ...     ...+++++.+|..+
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~-----~~~-----~~~~I~~i~gDs~~  140 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI-----PAS-----DMENITLHQGDCSD  140 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCC-----CGG-----GCTTEEEEECCSSC
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhh-----hhc-----cccceeeeeccccc
Confidence            34689999999999888776543   467899999998742211     111     25689999998764

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=0.00013  Score=46.42  Aligned_cols=51  Identities=20%  Similarity=0.225  Sum_probs=40.6

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCC-----------------ceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSN-----------------GEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~-----------------~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      .++.+|+|-+||+|.+.....+++...                 ..++|.|+++.+...|+-+...++
T Consensus       163 ~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~  230 (524)
T d2ar0a1         163 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD  230 (524)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred             ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhc
Confidence            456799999999999998877654221                 258999999999999998876555

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=97.30  E-value=0.00078  Score=41.53  Aligned_cols=51  Identities=18%  Similarity=0.089  Sum_probs=43.0

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGS-NGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      .++..++|+|+-.|..+..++...+. ..+|+++|.++...+..+++++.+.
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~  262 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYT  262 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcc
Confidence            45679999999999999888776532 4689999999999999999988765

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.27  E-value=0.00086  Score=36.19  Aligned_cols=45  Identities=24%  Similarity=0.318  Sum_probs=37.6

Q ss_pred             CCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          14 LKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      +.++.+|+-+||| .|..++.+++..  +.+++++|.+++-++.+++.
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~~   69 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKNC   69 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHHc
Confidence            6788899999988 666777778775  56999999999999998874

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.24  E-value=0.00036  Score=37.89  Aligned_cols=46  Identities=17%  Similarity=0.161  Sum_probs=38.4

Q ss_pred             cCCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          13 NLKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        13 ~~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      .+.++++|+-+|+| .|..+..+++..  +.+++++|.+++.++.+++.
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHHH
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhc--cccccccccchhHHHHhhcc
Confidence            47789999999988 677778888876  56999999999988888774

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.18  E-value=0.00072  Score=37.68  Aligned_cols=47  Identities=28%  Similarity=0.399  Sum_probs=38.2

Q ss_pred             cCCCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          13 NLKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      .+.++.+|+.+|||. |..+..+++.. ...+|+.+|.+++.++.|++.
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhh-cccceeeecccchhhHhhhhc
Confidence            478899999999987 55666677665 456899999999999998875

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.0012  Score=38.99  Aligned_cols=45  Identities=20%  Similarity=0.300  Sum_probs=34.6

Q ss_pred             CCeEEEecCCCChHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhh
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVGSNGE-VTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~   62 (88)
                      +.+|+|+.||.|+++..+-.. +-+.+ +.++|+++.+++.-+.|+.
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~~   47 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNFP   47 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT
T ss_pred             CCEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHCC
Confidence            468999999999998887554 22333 6799999998888777653

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.11  E-value=0.00024  Score=41.45  Aligned_cols=35  Identities=29%  Similarity=0.438  Sum_probs=28.6

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeC
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVEL   49 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~   49 (88)
                      +.+..+|+|+|||.|+++..++.+. +...+.|+++
T Consensus        64 ~~~~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~i   98 (257)
T d2p41a1          64 VTPEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTK   98 (257)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTST-TEEEEEEECC
T ss_pred             ccCCCeEEEecCCCChHHHHHHhhc-CCCceeEEEe
Confidence            5677799999999999999998874 4456777777

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=96.92  E-value=0.00012  Score=42.72  Aligned_cols=65  Identities=17%  Similarity=0.076  Sum_probs=47.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh---------------------------------------CCCceEEEEeCCHHHHHH
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV---------------------------------------GSNGEVTAVELIPEVLQF   56 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~---------------------------------------~~~~~v~~~D~~~~~~~~   56 (88)
                      .+..++|-.||+|.+.+..+-..                                       ....++++.|+++.+++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            34579999999999988754421                                       011246788888888888


Q ss_pred             H---HHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          57 T---HYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        57 a---~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      |   ++|+...+    ....+++...|.++.
T Consensus       130 A~~~r~n~~~Ag----l~~~i~i~~~d~f~~  156 (249)
T d1o9ga_         130 ARRLRERLTAEG----GALPCAIRTADVFDP  156 (249)
T ss_dssp             HHHHHHHHHHTT----SSCCEEEEECCTTCG
T ss_pred             HHHHHHHHHHcC----CCceeeeeecchhcc
Confidence            8   45777766    667889999988653

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.91  E-value=0.0026  Score=37.15  Aligned_cols=42  Identities=19%  Similarity=0.115  Sum_probs=33.2

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      ++|+|+.||.|++...+-+..  --.+.++|+++.+.+.-+.|+
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG--~~~~~a~e~d~~a~~~~~~N~   42 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAG--FRIICANEYDKSIWKTYESNH   42 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHT--CEEEEEEECCHHHHHHHHHHC
T ss_pred             CeEEEeCcCcCHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHHC
Confidence            479999999999998876652  224679999998887777665

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.81  E-value=0.002  Score=37.99  Aligned_cols=47  Identities=15%  Similarity=0.105  Sum_probs=37.7

Q ss_pred             CCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhh
Q psy8023          15 KPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ   63 (88)
Q Consensus        15 ~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~   63 (88)
                      ..+.+|+|+.||.|+++..+-+..  --.+.++|+++.+++.-+.|+..
T Consensus         9 ~~~lrv~~lFsG~Gg~~~gl~~aG--~~~v~a~e~d~~a~~~~~~N~~~   55 (327)
T d2c7pa1           9 LTGLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGE   55 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSC
T ss_pred             CCCCeEEEECccccHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHCCC
Confidence            356899999999999999876652  22468899999999988888743

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.80  E-value=0.0021  Score=35.04  Aligned_cols=46  Identities=22%  Similarity=0.284  Sum_probs=36.7

Q ss_pred             CCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          14 LKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      +.++.+||-+|+| .|.....+++..+ ..+|+++|.+++.++.+++.
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a~~l   72 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEEI   72 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCccchhheecccccc-cccccccccccccccccccc
Confidence            4678999999987 4667777888763 23899999999999888774

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.78  E-value=0.0045  Score=33.10  Aligned_cols=45  Identities=22%  Similarity=0.291  Sum_probs=36.4

Q ss_pred             CCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          14 LKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      +.++.+|+-+|+| .|.....+++..  +.+++++|.++..++.+++.
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~~   70 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARKL   70 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhcc
Confidence            6788899889987 566667777776  46999999999998888764

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=96.69  E-value=0.016  Score=35.00  Aligned_cols=48  Identities=21%  Similarity=0.246  Sum_probs=36.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC------CCceEEEEeCCHHHHHHHHHhhhh
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG------SNGEVTAVELIPEVLQFTHYNIQQ   63 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~------~~~~v~~~D~~~~~~~~a~~~~~~   63 (88)
                      +...|+|+|+|.|.++..+.+.+.      ...+++.+|.|+.+.+.-++++..
T Consensus        79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~  132 (365)
T d1zkda1          79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  132 (365)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc
Confidence            345899999999999988877653      234689999999766666655543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.64  E-value=0.0022  Score=34.99  Aligned_cols=47  Identities=15%  Similarity=0.208  Sum_probs=36.9

Q ss_pred             CCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023          14 LKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus        14 ~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      ++++..|+-+|+| .|...+.+++.. ...+|+++|.+++.++.|++.=
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~-G~~~Vi~vd~~~~kl~~Ak~~G   74 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSA-GASRIIGIDLNKDKFEKAMAVG   74 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHHT
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHc-CCceEEEecCcHHHHHHHHhcC
Confidence            6788999999987 444566666665 3468999999999999998863

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.011  Score=33.96  Aligned_cols=63  Identities=11%  Similarity=0.011  Sum_probs=46.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--|++.| ++..+++.+ ..+.+|+.++.+++.++.+.+.++..+    ...++.++..|+.+
T Consensus         9 k~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~----~~~~~~~~~~Dls~   72 (257)
T d1xg5a_           9 RDRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG----YPGTLIPYRCDLSN   72 (257)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CSSEEEEEECCTTC
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CCceEEEEEccCCC
Confidence            4677888886654 455555543 356799999999999988888877655    34578888999875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.49  E-value=0.0034  Score=34.17  Aligned_cols=47  Identities=26%  Similarity=0.451  Sum_probs=37.3

Q ss_pred             cCCCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          13 NLKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      .+.++.+|+-+|||. |..+..+++..+ ..+|+++|.++.-++.+++.
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~~l   71 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPICVEAAKFY   71 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHHHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhhhHHHHHhh
Confidence            367888999999985 777788888753 24799999999988888764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.46  E-value=0.0032  Score=34.33  Aligned_cols=47  Identities=17%  Similarity=0.290  Sum_probs=38.8

Q ss_pred             cCCCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          13 NLKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      .++++..|+-+|||. |..++.+++..+ ..+|+.+|.+++-++.+++.
T Consensus        25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~~   72 (174)
T d1e3ia2          25 KVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKAL   72 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHHh
Confidence            367889999999986 888888888863 35799999999988888874

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.43  E-value=0.003  Score=34.37  Aligned_cols=47  Identities=15%  Similarity=0.225  Sum_probs=36.5

Q ss_pred             cCCCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          13 NLKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      .+.++.+|+-+|||. |.....+++..+ ..+|+++|.+++-++.+++.
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~~kl~~a~~l   71 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIEL   71 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChHHHHHHHHHc
Confidence            367899999999874 445566666663 45899999999999988874

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.23  E-value=0.019  Score=30.81  Aligned_cols=47  Identities=26%  Similarity=0.385  Sum_probs=35.4

Q ss_pred             cCCCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          13 NLKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      .+.++..|+-+|+|. |.....+++..+ ..+++++|.+++-++.+++.
T Consensus        29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~~~   76 (172)
T d1h2ba2          29 TLYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAERL   76 (172)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHHT
T ss_pred             ccCCCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHhhc
Confidence            357888999999874 445566676653 45899999999888888764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.019  Score=30.77  Aligned_cols=46  Identities=26%  Similarity=0.317  Sum_probs=35.5

Q ss_pred             CCCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          14 LKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        14 ~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      +.++.+|+-+|+|. |.....+++.. ...+|+++|.++.-++.+++.
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~-G~~~Vi~~d~~~~rl~~a~~~   70 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKEI   70 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHc-CCceEEeccCCHHHHHHHHHh
Confidence            67888999999974 44556666665 234899999999999988874

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.16  E-value=0.011  Score=31.99  Aligned_cols=46  Identities=20%  Similarity=0.395  Sum_probs=35.0

Q ss_pred             CCCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          14 LKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        14 ~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      ++++.+|+-+|||. |..+..+++..+ ..+++.+|.++.-++.+++.
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~~   72 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQL   72 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHHHc
Confidence            67889999999873 445666676663 34788999999988888774

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.11  E-value=0.012  Score=30.37  Aligned_cols=52  Identities=10%  Similarity=0.158  Sum_probs=35.9

Q ss_pred             eEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          19 KVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +|+-+  |.|.++..+++.+. .+..|+.+|.+++.++.+.+..   +        +.++.+|+.+
T Consensus         2 ~IvI~--G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~---~--------~~vi~Gd~~~   54 (132)
T d1lssa_           2 YIIIA--GIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI---D--------ALVINGDCTK   54 (132)
T ss_dssp             EEEEE--CCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---S--------SEEEESCTTS
T ss_pred             EEEEE--CCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh---h--------hhhccCcccc
Confidence            44544  45888888887653 3568999999999888776532   2        3566677654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.03  E-value=0.0071  Score=32.54  Aligned_cols=47  Identities=19%  Similarity=0.258  Sum_probs=35.4

Q ss_pred             cCCCCCeEEEecCCCChH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          13 NLKPGAKVLDIGSGSGYL-TACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~G~~-~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      .++++.+|+-+|+|.+.. ...++... ...+|+++|.+++-++.+++.
T Consensus        25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~-g~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCCEEEEEecCCccchHHHHHHHH-hhchheeecchHHHHHHHHHc
Confidence            367889999999887554 44444443 456899999999988888774

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.91  E-value=0.054  Score=30.83  Aligned_cols=61  Identities=11%  Similarity=0.037  Sum_probs=45.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++.+|--|. ++.++..+++.+. .+.+|+.+|.+++.++.+.+.++..+      .++.++..|+++
T Consensus         9 enKvalITGa-s~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g------~~~~~~~~Dvt~   70 (251)
T d2c07a1           9 ENKVALVTGA-GRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG------YESSGYAGDVSK   70 (251)
T ss_dssp             SSCEEEEEST-TSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT------CCEEEEECCTTC
T ss_pred             CCCEEEEeCC-CCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCCC
Confidence            5666666665 5567777777653 46699999999999988888887654      467888888875

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=95.87  E-value=0.041  Score=31.49  Aligned_cols=61  Identities=13%  Similarity=0.184  Sum_probs=44.2

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--|.+ +.++..+++.+ ..+.+|+.+|.+++.++.+.+.++..+      .++..+..|+.+
T Consensus         4 ~gK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g------~~~~~~~~Dv~~   65 (260)
T d1zema1           4 NGKVCLVTGAG-GNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG------VEARSYVCDVTS   65 (260)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT------SCEEEEECCTTC
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCCC
Confidence            56777777755 45555555543 346789999999999998888887654      467888888775

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.05  Score=31.07  Aligned_cols=61  Identities=11%  Similarity=-0.024  Sum_probs=45.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--| |++.++..+++.+ ..+.+|+.+|.+++.++.+.+.++..+      .++.++..|+.+
T Consensus        10 ~gK~alITG-as~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g------~~~~~~~~Dvs~   71 (255)
T d1fmca_          10 DGKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG------GQAFACRCDITS   71 (255)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTC
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC------CcEEEEEccCCC
Confidence            567777655 4556666666654 456799999999999988888887754      467788888875

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.013  Score=31.47  Aligned_cols=45  Identities=20%  Similarity=0.167  Sum_probs=35.9

Q ss_pred             cCCCCCeEEEecC--CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPGAKVLDIGS--GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~~~vlD~g~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .+.++.+||-.|+  |.|..++.+++..  +.++++++-+++..+.+++
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~   71 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ   71 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEEecccccccccccccccc--Ccccccccccccccccccc
Confidence            3678899999996  4677788888876  5689999999987777765

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.018  Score=30.83  Aligned_cols=46  Identities=22%  Similarity=0.195  Sum_probs=35.4

Q ss_pred             cCCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          13 NLKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        13 ~~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      .++++++|+-+|+| .|.....+++..  +.+++++|.+++-.+.+++.
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~l   73 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKAL   73 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHH
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhcc
Confidence            37889999999986 466777777775  56888999998877777653

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.75  E-value=0.05  Score=31.14  Aligned_cols=61  Identities=11%  Similarity=0.018  Sum_probs=44.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHH-hCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADL-VGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~-~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.|+. +.++..+++. ...+.+|+.++.+++.++.+.+.++..+      .++.++..|+.+
T Consensus         5 ~gK~alITGas-~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~------~~~~~~~~D~s~   66 (258)
T d1ae1a_           5 KGTTALVTGGS-KGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG------LNVEGSVCDLLS   66 (258)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTC
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CCceEEEeecCC
Confidence            67788888875 5555555544 3346799999999998888888887654      457777888765

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.045  Score=31.20  Aligned_cols=63  Identities=14%  Similarity=-0.000  Sum_probs=44.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++.+|--|++ +.++..+++.+ ..+.+|+.+|.+++.++.+.+.+....    ...++.++..|+.+
T Consensus         2 ~GKvalITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dv~~   65 (254)
T d2gdza1           2 NGKVALVTGAA-QGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF----EPQKTLFIQCDVAD   65 (254)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS----CGGGEEEEECCTTS
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc----CCCcEEEEEeecCC
Confidence            45667777755 55566666653 356799999999988888777665433    25678888999876

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=95.73  E-value=0.048  Score=31.22  Aligned_cols=63  Identities=19%  Similarity=0.233  Sum_probs=43.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--|++.| ++..+++.+ ..+.+|+.+|.+++.++.+.+.+....    ...++..+..|+.+
T Consensus         3 ~gK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~----~~~~~~~~~~Dvt~   66 (258)
T d1iy8a_           3 TDRVVLITGGGSG-LGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETA----PDAEVLTTVADVSD   66 (258)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHC----TTCCEEEEECCTTS
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC----CCCeEEEEeccCCC
Confidence            4567777776544 444444443 346799999999999888877766544    34578888888775

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.60  E-value=0.048  Score=31.43  Aligned_cols=64  Identities=19%  Similarity=0.175  Sum_probs=45.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--|++. .++..+++.+ ..+.+|+.+|.+++.++.+.+.+...+   ....++.++..|+.+
T Consensus         3 ~gK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~---~~~~~~~~~~~Dv~~   67 (274)
T d1xhla_           3 SGKSVIITGSSN-GIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAG---VPAEKINAVVADVTE   67 (274)
T ss_dssp             TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---CCGGGEEEEECCTTS
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcceEEEEeeCCC
Confidence            466777777654 4566665544 346799999999999988888887655   123578889999875

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.032  Score=29.87  Aligned_cols=45  Identities=13%  Similarity=0.158  Sum_probs=36.5

Q ss_pred             CCCCCeEEEecCC--CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          14 LKPGAKVLDIGSG--SGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        14 ~~~~~~vlD~g~G--~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      +.++++|+-.|+|  .|...+.+++..  +.+|++++.+++-.+.+++.
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~~--Ga~Vi~~~~s~~k~~~~~~l   72 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALKA   72 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHH
T ss_pred             CCCCCEEEEEccccccchHHHHHHHHh--CCeEeecccchHHHHHHHhc
Confidence            5778898888544  677888888887  56999999999988887764

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.59  E-value=0.015  Score=31.83  Aligned_cols=40  Identities=28%  Similarity=0.455  Sum_probs=30.4

Q ss_pred             eEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          19 KVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      +|.-+  |.|+.+..++..+..+.+|+++|+++..++..++.
T Consensus         2 kI~Vi--GlG~vGl~~a~~~a~g~~V~g~Din~~~v~~l~~g   41 (196)
T d1dlja2           2 KIAVA--GSGYVGLSLGVLLSLQNEVTIVDILPSKVDKINNG   41 (196)
T ss_dssp             EEEEE--CCSHHHHHHHHHHTTTSEEEEECSCHHHHHHHHTT
T ss_pred             EEEEE--CCChhHHHHHHHHHCCCcEEEEECCHHHHHHHhhc
Confidence            34445  57788888877776778999999999988776643

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.064  Score=30.49  Aligned_cols=61  Identities=16%  Similarity=0.049  Sum_probs=43.4

Q ss_pred             CCCeEEEecCCCChHHHHHHHH-hCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADL-VGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~-~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .|+.+|--|++.|. +..++.. ...+.+|+.+|.+++.++...+.+...+      .++..+..|..+
T Consensus         6 ~Gkv~lITGas~GI-G~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~------~~~~~~~~Dvs~   67 (244)
T d1yb1a_           6 TGEIVLITGAGHGI-GRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG------AKVHTFVVDCSN   67 (244)
T ss_dssp             TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTC
T ss_pred             CCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCC
Confidence            46667766766554 4444443 2346799999999999988888887644      568888888876

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.53  E-value=0.015  Score=31.18  Aligned_cols=47  Identities=17%  Similarity=0.275  Sum_probs=35.7

Q ss_pred             cCCCCCeEEEecCC-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          13 NLKPGAKVLDIGSG-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        13 ~~~~~~~vlD~g~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      .++++.+|+-.|+| .|..++.+++..+ ..+|+++|.+++..+.+++.
T Consensus        25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak~l   72 (176)
T d2fzwa2          25 KLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKEF   72 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHHHh
Confidence            36889999998876 4446666777763 35899999999888888764

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=95.48  E-value=0.069  Score=30.52  Aligned_cols=61  Identities=11%  Similarity=0.030  Sum_probs=44.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--|++ +.++..+++.+ ..+.+|+.+|.+++.++.+.+.+...+      .++.++..|+.+
T Consensus         7 ~GK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g------~~~~~~~~Dv~~   68 (259)
T d2ae2a_           7 EGCTALVTGGS-RGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG------FKVEASVCDLSS   68 (259)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CEEEEEECCTTC
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CCceEEEeeCCC
Confidence            57778877755 55556665544 246789999999999988888877644      567778888765

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.42  E-value=0.061  Score=30.92  Aligned_cols=64  Identities=17%  Similarity=0.102  Sum_probs=45.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--|++ +.++..+++.+ ..+.+|+.+|.+++.++.+.+.+...+   ....++.++..|+.+
T Consensus         4 ~gK~alVTGas-~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~---~~~~~~~~~~~Dvs~   68 (272)
T d1xkqa_           4 SNKTVIITGSS-NGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSG---VSEKQVNSVVADVTT   68 (272)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT---CCGGGEEEEECCTTS
T ss_pred             CCCEEEEeCcC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CCCCceEEEEccCCC
Confidence            46677766654 55566665544 346799999999999998888887654   123578889999875

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=95.40  E-value=0.061  Score=30.83  Aligned_cols=60  Identities=12%  Similarity=-0.016  Sum_probs=42.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--|++. .++..+++.+ ..+.+|+.+|.+++.++.+.+.+..       ..++.++..|+.+
T Consensus         5 ~gKvalITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~-------~~~~~~~~~Dv~~   65 (268)
T d2bgka1           5 QDKVAIITGGAG-GIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS-------PDVISFVHCDVTK   65 (268)
T ss_dssp             TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-------TTTEEEEECCTTC
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC-------CCceEEEEccCCC
Confidence            567788878654 4566666553 3467999999999888877776654       2357778888765

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.32  E-value=0.028  Score=29.87  Aligned_cols=42  Identities=21%  Similarity=0.277  Sum_probs=28.0

Q ss_pred             eEEEecCCC-Ch-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023          19 KVLDIGSGS-GY-LTACFADLVGSNGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus        19 ~vlD~g~G~-G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      +|+-+|||. |. ++..+.+. +...+|+++|.+++.++.+++.-
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~-g~~~~I~~~D~~~~~~~~a~~~~   46 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVDLG   46 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHHTT
T ss_pred             EEEEEccCHHHHHHHHHHHhc-CCCeEEEEEECChHHHHHHHHhh
Confidence            477788763 33 22233332 34568999999999999888763

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.23  E-value=0.076  Score=30.33  Aligned_cols=64  Identities=16%  Similarity=0.085  Sum_probs=45.2

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--|++ +.++..+++.+ ..+.+|+.+|.+++.++.+.+.+...+   ....++.++..|+.+
T Consensus         4 ~gKvalVTGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~---~~~~~~~~~~~Dvt~   68 (264)
T d1spxa_           4 AEKVAIITGSS-NGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAG---VSEQNVNSVVADVTT   68 (264)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---CCGGGEEEEECCTTS
T ss_pred             CCCEEEEeCcC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CCcCceEEEEccCCC
Confidence            45666666655 55566666554 356799999999999988888876654   023578899999875

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.14  E-value=0.11  Score=29.51  Aligned_cols=60  Identities=13%  Similarity=0.038  Sum_probs=43.0

Q ss_pred             CCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++.|--| |++.++..+++.+ ..+.+|+.+|.+++.++.+.+.++..+      .++.++..|+.+
T Consensus         2 gKValITG-as~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g------~~~~~~~~Dvs~   62 (257)
T d2rhca1           2 SEVALVTG-ATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG------VEADGRTCDVRS   62 (257)
T ss_dssp             CCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTC
T ss_pred             CCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeecCC
Confidence            44455555 4555566666654 346799999999999998888887654      468888888875

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.09  E-value=0.025  Score=30.38  Aligned_cols=48  Identities=8%  Similarity=0.024  Sum_probs=36.0

Q ss_pred             cCCCCCeEEEecCCCCh-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh
Q psy8023          13 NLKPGAKVLDIGSGSGY-LTACFADLVGSNGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      .++++..|+-+|+|.+. ..+.+++.. ...+|+++|.+++-.+.+++.-
T Consensus        25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~-g~~~Vi~~~~~~~k~~~a~~~G   73 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKEVG   73 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTT
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHc-CCceEEeecCcHHHHHHHHHhC
Confidence            37889999999986433 555555554 4569999999999888887753

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.09  E-value=0.053  Score=28.80  Aligned_cols=46  Identities=24%  Similarity=0.406  Sum_probs=35.8

Q ss_pred             CCCCCeEEEecC-C-CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          14 LKPGAKVLDIGS-G-SGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        14 ~~~~~~vlD~g~-G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      +.++.+|+-+|+ | .|..++.+++.. ...+|+.+|.++.-++.+++.
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~-g~~~V~~~~~~~~~~~~~~~~   72 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVREEAVEAAKRA   72 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeccccceeeeeeccccc-ccccccccccchhhHHHHHHc
Confidence            678889999996 3 556667677765 345899999999888888764

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.89  E-value=0.085  Score=30.01  Aligned_cols=62  Identities=11%  Similarity=-0.031  Sum_probs=41.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--|++. .++..+++.+ ..+.+|+.+|.+++.++.+.+.+....     ..++.++..|+.+
T Consensus         4 ~gK~~lITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~-----g~~~~~~~~Dv~~   66 (251)
T d1vl8a_           4 RGRVALVTGGSR-GLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-----GVETMAFRCDVSN   66 (251)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----CCCEEEEECCTTC
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-----CCcEEEEEccCCC
Confidence            567778777654 4555555543 346789999999988777666554332     2467778888765

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.82  E-value=0.11  Score=29.60  Aligned_cols=61  Identities=10%  Similarity=0.043  Sum_probs=44.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--|++ +.++..+++.+ ..+.+|+.++.+++.++.+.+.+...+      .++..+..|+.+
T Consensus         7 kgK~alVTGas-~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~------~~~~~~~~Dv~~   68 (259)
T d1xq1a_           7 KAKTVLVTGGT-KGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG------FQVTGSVCDASL   68 (259)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTS
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CceEEEeccCCC
Confidence            57777877765 44555555543 346789999999998888888777644      467888888764

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.12  Score=29.53  Aligned_cols=62  Identities=13%  Similarity=-0.012  Sum_probs=46.9

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG--SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+++|.=+.-|+++++..+++.+.  .+.+|+.++.+++.++.+.+.++..+      .++.++..|+.+
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dvs~   64 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG------LSPRFHQLDIDD   64 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT------CCCEEEECCTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEEecCC
Confidence            367886676677778777776542  25689999999999998888887654      457788888765

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=94.61  E-value=0.1  Score=30.08  Aligned_cols=61  Identities=16%  Similarity=0.105  Sum_probs=40.7

Q ss_pred             CCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          17 GAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++|--|++ ++++..+++.+ ..+.+|+.+|.++..++.+.+.+....     ..++.++..|+.+
T Consensus        25 gK~alITGas-~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~-----g~~~~~~~~D~~~   86 (294)
T d1w6ua_          25 GKVAFITGGG-TGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-----GNKVHAIQCDVRD   86 (294)
T ss_dssp             TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----SSCEEEEECCTTC
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc-----CCceEEEEecccC
Confidence            4567766654 55666666653 246699999999988777666554332     3456777778765

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.58  E-value=0.092  Score=28.47  Aligned_cols=46  Identities=22%  Similarity=0.222  Sum_probs=36.3

Q ss_pred             CCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhh
Q psy8023          16 PGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQ   63 (88)
Q Consensus        16 ~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~   63 (88)
                      ++.+|+-+|+|. |..++..+..+  +.+|+.+|.+++.++..+..+..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~~~l~~l~~~~~~   77 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFGS   77 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHGG
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC--CCEEEEEeCcHHHHHHHHHhhcc
Confidence            356899999995 55667777777  56999999999998887776543

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.53  E-value=0.18  Score=28.58  Aligned_cols=57  Identities=11%  Similarity=-0.061  Sum_probs=41.2

Q ss_pred             EEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          20 VLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        20 vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +|--| |++.++..+++.+ ..+.+|+.+|.+++.++.+.+.+...+      .++.++..|+.+
T Consensus         4 alITG-as~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g------~~~~~~~~Dv~~   61 (255)
T d1gega_           4 ALVTG-AGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG------GHAVAVKVDVSD   61 (255)
T ss_dssp             EEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTS
T ss_pred             EEEcC-CccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCC
Confidence            35455 4456666666654 346799999999999988888887654      467788888875

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=94.37  E-value=0.13  Score=29.13  Aligned_cols=60  Identities=10%  Similarity=0.014  Sum_probs=42.2

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--| |++.++..+++.+ ..+.+|+.+|.+++.++.+.+.+..       ..++.++..|+.+
T Consensus         5 ~gK~alVTG-as~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~   65 (251)
T d1zk4a1           5 DGKVAIITG-GTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-------PDQIQFFQHDSSD   65 (251)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-------TTTEEEEECCTTC
T ss_pred             CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-------CCcEEEEEccCCC
Confidence            466677666 4555666665543 3467999999999888877776643       3468888899875

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.29  E-value=0.21  Score=28.25  Aligned_cols=61  Identities=10%  Similarity=0.066  Sum_probs=43.2

Q ss_pred             eEEEecCCCChHHHHHHHHh----CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          19 KVLDIGSGSGYLTACFADLV----GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +|.-+.-|+++++..+++.+    ..+.+|+.++.+++.++.+.+.+....    ...++.++..|+.+
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~----~~~~~~~~~~Dvs~   71 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQ----PDLKVVLAAADLGT   71 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHC----TTSEEEEEECCTTS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhc----CCceEEEEEccCCC
Confidence            34445445556677776654    246799999999999988877776544    34578888888775

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.29  E-value=0.15  Score=26.69  Aligned_cols=46  Identities=28%  Similarity=0.342  Sum_probs=35.3

Q ss_pred             cCCCCCeEEEecCCC-ChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          13 NLKPGAKVLDIGSGS-GYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      .+.++++|+-.|+|. |...+.+++..  +.+++++|.+++-++.+++.
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~~   70 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKEL   70 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhhc
Confidence            367889999999875 44555566664  55899999999998888774

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.13  E-value=0.19  Score=28.68  Aligned_cols=62  Identities=18%  Similarity=0.096  Sum_probs=41.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +|+++|--|++.| ++..+++.+ ..+.+|+.++.+++.++.+.+......     ...+.+...|..+
T Consensus        13 ~GK~alITGassG-IG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~-----~~~~~~~~~d~~~   75 (269)
T d1xu9a_          13 QGKKVIVTGASKG-IGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG-----AASAHYIAGTMED   75 (269)
T ss_dssp             TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-----CSEEEEEECCTTC
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhh-----cccchhhhhhhhh
Confidence            5677887776655 555555543 346799999999999988877665443     3456666666543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.05  E-value=0.09  Score=27.43  Aligned_cols=56  Identities=13%  Similarity=0.019  Sum_probs=35.0

Q ss_pred             eEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCcccc
Q psy8023          19 KVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDIQ   84 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (88)
                      +++-+|  .|..+..+++.+. .+.+++.+|.+++......+....        ..+.++.||+.+.
T Consensus         5 HiII~G--~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~--------~~~~vi~Gd~~d~   61 (153)
T d1id1a_           5 HFIVCG--HSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG--------DNADVIPGDSNDS   61 (153)
T ss_dssp             CEEEEC--CSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC--------TTCEEEESCTTSH
T ss_pred             EEEEEC--CCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc--------CCcEEEEccCcch
Confidence            455555  4677777766542 356799999998654443333332        2477888887763

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.62  E-value=0.081  Score=26.87  Aligned_cols=46  Identities=13%  Similarity=-0.070  Sum_probs=34.3

Q ss_pred             CCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          25 SGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        25 ~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ||.|..+..+++.+ .+..++.+|.++...+..++    .+        +.++.+|+++
T Consensus         6 ~G~g~~g~~l~~~L-~~~~i~vi~~d~~~~~~~~~----~~--------~~~i~Gd~~~   51 (129)
T d2fy8a1           6 CGWSESTLECLREL-RGSEVFVLAEDENVRKKVLR----SG--------ANFVHGDPTR   51 (129)
T ss_dssp             ESCCHHHHHHHHTS-CGGGEEEEESCTTHHHHHHH----TT--------CEEEESCTTS
T ss_pred             ECCCHHHHHHHHHH-cCCCCEEEEcchHHHHHHHh----cC--------ccccccccCC
Confidence            57788999999988 45678999999987765533    22        5677787765

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=93.61  E-value=0.34  Score=28.27  Aligned_cols=65  Identities=14%  Similarity=0.090  Sum_probs=42.9

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++++||-.| |+|+++..+++.+ ..+.+|+++.-+.......++......    ......++.+|+.+
T Consensus         8 ~~~gk~VlVTG-~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~   73 (342)
T d1y1pa1           8 LPEGSLVLVTG-ANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKY----PGRFETAVVEDMLK   73 (342)
T ss_dssp             SCTTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHS----TTTEEEEECSCTTS
T ss_pred             CCCcCEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccc----cccccEEEeccccc
Confidence            46788888777 5699999988764 335689998877766666555444333    23444556677654

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=93.50  E-value=0.15  Score=29.36  Aligned_cols=57  Identities=19%  Similarity=0.193  Sum_probs=35.8

Q ss_pred             eEEEecCCCChHHHHHHHHh-CCCceEEEEe-CCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          19 KVLDIGSGSGYLTACFADLV-GSNGEVTAVE-LIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +|| +--|+|+++..+.+.+ ..+.+|+++| ++...-....+....       ..+++++.+|+.+
T Consensus         2 KIL-VTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~-------~~~~~~i~~Di~~   60 (338)
T d1orra_           2 KLL-ITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS-------LGNFEFVHGDIRN   60 (338)
T ss_dssp             EEE-EETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT-------TCCCEEEECCTTC
T ss_pred             EEE-EECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhc-------cCCcEEEEcccCC
Confidence            466 4558899999988765 3567899998 333222211222222       3468899999875

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.49  E-value=0.12  Score=27.49  Aligned_cols=44  Identities=18%  Similarity=0.281  Sum_probs=33.9

Q ss_pred             CCCCCeEEEec--CCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIG--SGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g--~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +.++++||-.|  .|.|..++.+++..  +.+++++.-+++-.+.+++
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~~   68 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSR   68 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCcccccchhhccc--cccceeeeccccccccccc
Confidence            57788998876  45677888888887  5689999888877776665

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=93.39  E-value=0.23  Score=26.58  Aligned_cols=45  Identities=20%  Similarity=0.193  Sum_probs=35.3

Q ss_pred             CCCCCeEEEecCC--CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q psy8023          14 LKPGAKVLDIGSG--SGYLTACFADLVGSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        14 ~~~~~~vlD~g~G--~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      +.++++||-.|++  .|...+.+++..  +.+++++.-+++..+.+++.
T Consensus        27 v~~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~   73 (182)
T d1v3va2          27 VKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQI   73 (182)
T ss_dssp             CCSSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT
T ss_pred             CCCCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHhh
Confidence            6788999887764  566777788876  56999999999877777665

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=93.23  E-value=0.19  Score=28.58  Aligned_cols=62  Identities=8%  Similarity=0.048  Sum_probs=40.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCC-HHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELI-PEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--|++ +.++..+++.+ ..+.+|+.++.+ +..++.+.+.+....     ..++.++..|+.+
T Consensus         3 ~gK~alITGas-~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~-----g~~~~~~~~Dv~~   66 (260)
T d1x1ta1           3 KGKVAVVTGST-SGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-----GVKVLYDGADLSK   66 (260)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH-----TSCEEEECCCTTS
T ss_pred             CcCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc-----CCcEEEEECCCCC
Confidence            56667755555 55566665544 346789999986 566766666654433     3568888888875

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=93.22  E-value=0.084  Score=30.09  Aligned_cols=61  Identities=10%  Similarity=0.075  Sum_probs=40.5

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhh-hhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNI-QQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--| |++.++..+++.+ ..+.+|+.+|.+++.++.+.+.+ +..+      .++.++..|+.+
T Consensus         8 ~gK~alITG-as~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g------~~~~~~~~Dv~~   70 (260)
T d1h5qa_           8 VNKTIIVTG-GNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG------VKTKAYQCDVSN   70 (260)
T ss_dssp             TTEEEEEET-TTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHT------CCEEEEECCTTC
T ss_pred             CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC------CceEEEEccCCC
Confidence            566777777 4556666666654 34678999999887665555444 3333      467788888775

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.86  E-value=0.076  Score=28.38  Aligned_cols=45  Identities=27%  Similarity=0.256  Sum_probs=34.7

Q ss_pred             cCCCCCeEEEecC--CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          13 NLKPGAKVLDIGS--GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        13 ~~~~~~~vlD~g~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .++++++|+-.|.  +.|...+.+++..  +.++++++.+++..+.+++
T Consensus        24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~~~~~~~~~   70 (171)
T d1iz0a2          24 QARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA   70 (171)
T ss_dssp             TCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH
T ss_pred             CCCCCCEEEEEeccccchhhhhhhhccc--ccccccccccccccccccc
Confidence            3678899998884  3467777788876  5689999999877776665

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=92.83  E-value=0.046  Score=32.07  Aligned_cols=59  Identities=15%  Similarity=0.092  Sum_probs=34.1

Q ss_pred             eEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          19 KVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +||-. -|+|+++..++..+ ..+.+|+++|.....-+..........     ..+++++.+|+.+
T Consensus         2 KiLIt-G~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~d   61 (338)
T d1udca_           2 RVLVT-GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG-----GKHPTFVEGDIRN   61 (338)
T ss_dssp             EEEEE-TTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH-----TSCCEEEECCTTC
T ss_pred             EEEEE-CCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhc-----CCCCEEEEeecCC
Confidence            44544 48999999988765 345689999852211111111111111     3467888888775

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=92.81  E-value=0.059  Score=31.54  Aligned_cols=60  Identities=12%  Similarity=0.138  Sum_probs=39.1

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++++||-.| |+|+++..+++.+ ..+.+|+++|.++.......+..+       ...+++++.+|+.+
T Consensus         7 ~~KkILVTG-~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~-------~~~~i~~~~~Dl~d   67 (356)
T d1rkxa_           7 QGKRVFVTG-HTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR-------VADGMQSEIGDIRD   67 (356)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTT-------TTTTSEEEECCTTC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhh-------cccCCeEEEeeccC
Confidence            467888766 6799999887765 245689999986543322222221       23568888888764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=92.59  E-value=0.078  Score=29.17  Aligned_cols=45  Identities=20%  Similarity=0.127  Sum_probs=35.3

Q ss_pred             CCCeEEEecCCCCh-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023          16 PGAKVLDIGSGSGY-LTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus        16 ~~~~vlD~g~G~G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      ++.+|+-+|+|... .++..+..+  +.+|+.+|.++..++..++...
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~l--GA~V~v~D~~~~~~~~l~~l~~   73 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVESLGG   73 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHHTTC
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhhc
Confidence            35689999999654 666677777  6699999999988888887643

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.25  E-value=0.56  Score=27.19  Aligned_cols=66  Identities=12%  Similarity=0.057  Sum_probs=43.5

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--|++ +.++..+++.+ ..+.+|+.+|.+++.++.+.+.+...... ....++.++..|+.+
T Consensus        11 ~gKvalITGas-~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~-~~~~~~~~~~~Dvs~   77 (297)
T d1yxma1          11 QGQVAIVTGGA-TGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP-TKQARVIPIQCNIRN   77 (297)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT-TCCCCEEEEECCTTC
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhcc-ccCceEEEEeccCCC
Confidence            56677776755 45566665543 34679999999998887776666542200 024578888888875

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.25  E-value=0.2  Score=27.13  Aligned_cols=48  Identities=17%  Similarity=0.133  Sum_probs=33.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHH-hCCCceEEEEeCCHHHHHHHHHhhhhc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADL-VGSNGEVTAVELIPEVLQFTHYNIQQG   64 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~-~~~~~~v~~~D~~~~~~~~a~~~~~~~   64 (88)
                      ++++++-.|++.| ++..+++. ...+.+|+.++.+++.++...+.+..+
T Consensus        22 ~gK~vlItGasgG-IG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~   70 (191)
T d1luaa1          22 KGKKAVVLAGTGP-VGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR   70 (191)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhc
Confidence            6788888885544 44444433 234679999999998888877776553

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=92.15  E-value=0.53  Score=26.73  Aligned_cols=61  Identities=15%  Similarity=0.032  Sum_probs=40.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCH-HHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIP-EVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--|++. .++..+++.+ ..+.+|+.++.+. ..++.+.+.++..+      .++.++..|+.+
T Consensus         6 ~gK~alITGas~-GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g------~~~~~~~~Dvt~   68 (261)
T d1geea_           6 EGKVVVITGSST-GLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG------GEAIAVKGDVTV   68 (261)
T ss_dssp             TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT------CEEEEEECCTTS
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcC------CcEEEEEccCCC
Confidence            566677666554 4566665554 2466899999874 46676667676654      467788888875

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=91.99  E-value=0.52  Score=27.24  Aligned_cols=54  Identities=19%  Similarity=0.273  Sum_probs=35.2

Q ss_pred             CeEEEecCCCChHHHHHHHHh-CC-CceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLV-GS-NGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~-~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++||-.| |+|+++..+++.+ .. ..+|+++|....       ......    ...+++++.+|+++
T Consensus         1 MKILITG-~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~-------~~~~~~----~~~~~~~i~~Di~~   56 (342)
T d2blla1           1 MRVLILG-VNGFIGNHLTERLLREDHYEVYGLDIGSD-------AISRFL----NHPHFHFVEGDISI   56 (342)
T ss_dssp             CEEEEET-CSSHHHHHHHHHHHHSTTCEEEEEESCCG-------GGGGGT----TCTTEEEEECCTTT
T ss_pred             CEEEEEC-CCcHHHHHHHHHHHHCCCCEEEEEeCCCc-------chhhhc----cCCCeEEEECccCC
Confidence            3566665 5999999988765 22 347999998542       111111    24578999999764

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.98  E-value=0.56  Score=26.61  Aligned_cols=61  Identities=13%  Similarity=0.004  Sum_probs=40.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCC-HHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELI-PEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.|++ +.++..+++.+ ..+.+|+..+.+ ++.++.+.+.++..+      .++.+...|..+
T Consensus        17 ~gK~~lITGas-~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g------~~~~~~~~D~~~   79 (272)
T d1g0oa_          17 EGKVALVTGAG-RGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG------SDAACVKANVGV   79 (272)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT------CCEEEEECCTTC
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhC------CceeeEeCCCCC
Confidence            46677777765 45556655544 245689999886 566777777676654      467788888765

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.95  E-value=0.057  Score=27.51  Aligned_cols=34  Identities=21%  Similarity=0.187  Sum_probs=25.8

Q ss_pred             CCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHH
Q psy8023          25 SGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTH   58 (88)
Q Consensus        25 ~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~   58 (88)
                      ||.|.++..+++.+. .+.+|+.+|.+++.++.++
T Consensus         6 iG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~   40 (134)
T d2hmva1           6 IGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYA   40 (134)
T ss_dssp             ECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTT
T ss_pred             ECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHH
Confidence            366788888877653 3567999999998887764

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=91.92  E-value=0.087  Score=24.79  Aligned_cols=44  Identities=14%  Similarity=0.166  Sum_probs=33.3

Q ss_pred             CCCCCeEEEecC--CCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023          14 LKPGAKVLDIGS--GSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        14 ~~~~~~vlD~g~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      .+++.+||-.|.  |.|...+.+++..  +.+|+++--+++-.+.+++
T Consensus        29 ~~~~~~vlI~gasGgVG~~aiQlak~~--G~~Vi~~t~s~~k~~~~~~   74 (77)
T d1o8ca2          29 RPQDGEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGRESTHEYLKS   74 (77)
T ss_dssp             CGGGCEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHH
T ss_pred             ccCCCcEEEEeCCCcHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHH
Confidence            356777877764  4666778888876  5689999999888877765

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.72  E-value=0.18  Score=30.01  Aligned_cols=32  Identities=38%  Similarity=0.457  Sum_probs=23.7

Q ss_pred             CCeEEEecCCCChHHHHHHHHh-CCCceEEEEeC
Q psy8023          17 GAKVLDIGSGSGYLTACFADLV-GSNGEVTAVEL   49 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~   49 (88)
                      |++||-.| |+|+++..++..+ ..+.+|+++|-
T Consensus         1 g~kILVTG-atGfiG~~lv~~Ll~~g~~V~~iDn   33 (393)
T d1i24a_           1 GSRVMVIG-GDGYCGWATALHLSKKNYEVCIVDN   33 (393)
T ss_dssp             -CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCcCEEEEEec
Confidence            46777666 5999999987765 34568999994

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.61  E-value=0.6  Score=26.26  Aligned_cols=58  Identities=10%  Similarity=-0.007  Sum_probs=38.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--|++. .++..+++.+ ..+.+|+.+|.+++.++...+.+.         .++.++..|+.+
T Consensus         5 ~gK~alITGas~-GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~   63 (244)
T d1nffa_           5 TGKVALVSGGAR-GMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA---------DAARYVHLDVTQ   63 (244)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG---------GGEEEEECCTTC
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh---------CcceEEEeecCC
Confidence            566777777654 4555555543 346789999999987766655442         346677788765

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.96  E-value=0.44  Score=25.88  Aligned_cols=44  Identities=18%  Similarity=0.148  Sum_probs=30.0

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      ++|--+|+|+=+-++...-.. .+.+|+..|.+++.++.+++++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~-~G~~V~l~D~~~~~l~~a~~~i~   48 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAA-TGHTVVLVDQTEDILAKSKKGIE   48 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHh-CCCcEEEEECChHHHHHHHhhHH
Confidence            467778887533333333222 46789999999999988877764

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=90.78  E-value=0.74  Score=25.78  Aligned_cols=58  Identities=10%  Similarity=-0.035  Sum_probs=37.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--|.+ +.++..+++.+ ..+.+|+.+|.+++.++...+.+..         +...+..|+.+
T Consensus         3 ~gK~alITGas-~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~---------~~~~~~~Dv~~   61 (243)
T d1q7ba_           3 EGKIALVTGAS-RGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGA---------NGKGLMLNVTD   61 (243)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG---------GEEEEECCTTC
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCC---------CCcEEEEEecC
Confidence            45666766655 55566665543 3467899999999887766655432         34566677654

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.71  E-value=0.63  Score=25.98  Aligned_cols=57  Identities=7%  Similarity=-0.149  Sum_probs=37.6

Q ss_pred             eEEEecCCCChHHHHHHHHh----CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          19 KVLDIGSGSGYLTACFADLV----GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +||--| |+++++..+++.+    ..+.+|+.++-+++.++.+++..+..       .++.++..|+.+
T Consensus         4 tilITG-as~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~Dvs~   64 (248)
T d1snya_           4 SILITG-CNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNH-------SNIHILEIDLRN   64 (248)
T ss_dssp             EEEESC-CSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHC-------TTEEEEECCTTC
T ss_pred             EEEEeC-CCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcC-------CcEEEEEEEecc
Confidence            566555 4455677776654    34668999998887776666544442       367788888765

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.55  E-value=0.8  Score=25.79  Aligned_cols=58  Identities=17%  Similarity=0.080  Sum_probs=38.2

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--|++ +.++..+++.+ ..+.+|+.+|.+++.++.+.+.+   +      .++.++..|+.+
T Consensus         4 ~gK~alVTGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~------~~~~~~~~Dvt~   62 (256)
T d1k2wa_           4 DGKTALITGSA-RGIGRAFAEAYVREGARVAIADINLEAARATAAEI---G------PAACAIALDVTD   62 (256)
T ss_dssp             TTEEEEEETCS-SHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH---C------TTEEEEECCTTC
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C------CceEEEEeeCCC
Confidence            46677777755 55556665543 34678999999987776655443   3      346677788765

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.10  E-value=0.89  Score=25.60  Aligned_cols=57  Identities=12%  Similarity=-0.033  Sum_probs=37.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--|++. .++..+++.+ ..+.+|+.+|.+++.++...+..          .+..++..|+.+
T Consensus         5 ~GK~alITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~----------~~~~~~~~Dvs~   62 (250)
T d1ydea1           5 AGKVVVVTGGGR-GIGAGIVRAFVNSGARVVICDKDESGGRALEQEL----------PGAVFILCDVTQ   62 (250)
T ss_dssp             TTCEEEEETCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----------TTEEEEECCTTS
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc----------CCCeEEEccCCC
Confidence            567788777654 4555555543 34679999999998776655432          235667777765

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.04  E-value=0.88  Score=25.45  Aligned_cols=44  Identities=20%  Similarity=0.194  Sum_probs=30.6

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHh
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      +++++|--|++ +.++..+++.+ ..+.+|+.+|.+++.++...+.
T Consensus         6 ~GK~~lITGas-~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~   50 (244)
T d1pr9a_           6 AGRRVLVTGAG-KGIGRGTVQALHATGARVVAVSRTQADLDSLVRE   50 (244)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHh
Confidence            67788888865 45556665554 3467999999999877655443

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.94  E-value=0.13  Score=30.10  Aligned_cols=60  Identities=15%  Similarity=0.059  Sum_probs=35.8

Q ss_pred             CeEEEecCCCChHHHHHHHHh-CCCceEEEEeCC------HHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLV-GSNGEVTAVELI------PEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++|| +--|+|+++..+.+.+ ..+.+|+++|-.      ........+++....     ..++.++.+|+++
T Consensus         3 kKIL-ITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~d   69 (346)
T d1ek6a_           3 EKVL-VTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELT-----GRSVEFEEMDILD   69 (346)
T ss_dssp             SEEE-EETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHH-----TCCCEEEECCTTC
T ss_pred             CeEE-EECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhc-----CCCcEEEEeeccc
Confidence            4677 4568899999998875 345679999831      111111222222222     3467888888775

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=89.80  E-value=0.82  Score=25.54  Aligned_cols=57  Identities=9%  Similarity=-0.058  Sum_probs=37.5

Q ss_pred             EEEecCCCChHHHHHHHHhCC-Cc-------eEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          20 VLDIGSGSGYLTACFADLVGS-NG-------EVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        20 vlD~g~G~G~~~~~l~~~~~~-~~-------~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +|--| |+++++..+++.+.. +.       .++.++.+++.++.+.+.++..+      .++.++..|+.+
T Consensus         4 vlITG-as~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g------~~~~~~~~Dvt~   68 (240)
T d2bd0a1           4 LLITG-AGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG------ALTDTITADISD   68 (240)
T ss_dssp             EEEET-TTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT------CEEEEEECCTTS
T ss_pred             EEEcc-CCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEecCCC
Confidence            34445 444566666555422 22       38999999988888877776644      467788888775

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=89.55  E-value=1  Score=25.45  Aligned_cols=58  Identities=21%  Similarity=0.150  Sum_probs=38.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--|.+.| ++..+++.+ ..+.+|+.+|.+++.++...+.+         ..++.++..|+.+
T Consensus         4 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~~   62 (254)
T d1hdca_           4 SGKTVIITGGARG-LGAEAARQAVAAGARVVLADVLDEEGAATAREL---------GDAARYQHLDVTI   62 (254)
T ss_dssp             CCSEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT---------GGGEEEEECCTTC
T ss_pred             CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---------CCceEEEEcccCC
Confidence            5677777776654 555555543 24678999999987665544332         2457788888765

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.50  E-value=0.99  Score=25.40  Aligned_cols=58  Identities=12%  Similarity=0.035  Sum_probs=37.8

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--|++ +.++..+++.+ ..+.+|+.+|.+++.++.+.+.+   +      .+..++..|+.+
T Consensus         5 ~gK~alITGas-~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---~------~~~~~~~~Dv~~   63 (253)
T d1hxha_           5 QGKVALVTGGA-SGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---G------ERSMFVRHDVSS   63 (253)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C------TTEEEECCCTTC
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C------CCeEEEEeecCC
Confidence            56677766654 55666666653 34678999999998777665543   2      245566677654

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.25  E-value=0.64  Score=24.05  Aligned_cols=43  Identities=26%  Similarity=0.214  Sum_probs=29.7

Q ss_pred             CCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhh
Q psy8023          17 GAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTHYNI   61 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~   61 (88)
                      .++|+-+|+  |..+..+++.+. .+.+|+.+|.+.+..+...+++
T Consensus         2 ~K~IliiGa--G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~   45 (182)
T d1e5qa1           2 TKSVLMLGS--GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV   45 (182)
T ss_dssp             CCEEEEECC--STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTC
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcc
Confidence            467888887  555555555543 3558999999998777665544

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=89.12  E-value=1.1  Score=26.39  Aligned_cols=31  Identities=29%  Similarity=0.520  Sum_probs=23.7

Q ss_pred             CCeEEEecCCCChHHHHHHHHh--CCCceEEEEe
Q psy8023          17 GAKVLDIGSGSGYLTACFADLV--GSNGEVTAVE   48 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~l~~~~--~~~~~v~~~D   48 (88)
                      .++||-. -|+|+++..+.+++  ..+.+|+++|
T Consensus         2 ~MKVLIT-G~tGfIGs~lv~~LL~~~~~~V~~~D   34 (383)
T d1gy8a_           2 HMRVLVC-GGAGYIGSHFVRALLRDTNHSVVIVD   34 (383)
T ss_dssp             CCEEEEE-TTTSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             cCEEEEe-CCCcHHHHHHHHHHHHhCCCEEEEEe
Confidence            5678844 59999999988765  2456899998

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.76  E-value=1.2  Score=25.06  Aligned_cols=61  Identities=10%  Similarity=-0.006  Sum_probs=43.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHHhC-CCceEEEE-eCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLVG-SNGEVTAV-ELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~-D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .|+++|-.| |++.++..+++.+. .+.+|+.. .-++...+.+.+.+...+      .++.++..|+.+
T Consensus         5 ~GK~alITG-as~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g------~~~~~~~~D~~~   67 (259)
T d1ja9a_           5 AGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG------AQGVAIQADISK   67 (259)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT------CCEEEEECCTTS
T ss_pred             CCCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC------CCceEecCCCCC
Confidence            567788666 66777777776653 35577764 567777888888887765      467888888765

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=88.35  E-value=1.1  Score=25.06  Aligned_cols=59  Identities=8%  Similarity=0.084  Sum_probs=36.7

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++.+|--|. ++.++..+++.+ ..+.+|+.+|.++.  +.+.+..+..+      .++.++..|+.+
T Consensus         4 ~gKvalVTGa-s~GIG~aia~~la~~Ga~V~~~~~~~~--~~~~~~~~~~g------~~~~~~~~Dvs~   63 (247)
T d2ew8a1           4 KDKLAVITGG-ANGIGRAIAERFAVEGADIAIADLVPA--PEAEAAIRNLG------RRVLTVKCDVSQ   63 (247)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTT------CCEEEEECCTTC
T ss_pred             CCCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCch--HHHHHHHHHcC------CcEEEEEeeCCC
Confidence            4566776664 455666666554 34678999998763  23334444433      467788888775

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=88.32  E-value=0.63  Score=24.23  Aligned_cols=40  Identities=15%  Similarity=0.078  Sum_probs=26.1

Q ss_pred             eEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHh
Q psy8023          19 KVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      +|.-+|+  |..+..+++.+ ..+.+|++.|.+++.++.+++.
T Consensus         2 kI~iIG~--G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~   42 (165)
T d2f1ka2           2 KIGVVGL--GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER   42 (165)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT
T ss_pred             EEEEEee--cHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHh
Confidence            4566665  44444444332 1356899999999888887764

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=88.24  E-value=1.3  Score=25.13  Aligned_cols=58  Identities=17%  Similarity=0.126  Sum_probs=38.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--|++ +.++..+++.+ ..+.+|+.+|.+++.++...+..   +      .++..+..|+.+
T Consensus         4 ~gK~alITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~---~------~~~~~~~~Dv~~   62 (276)
T d1bdba_           4 KGEAVLITGGA-SGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH---G------DNVLGIVGDVRS   62 (276)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G------GGEEEEECCTTC
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C------CCeeEEeccccc
Confidence            56777777754 55666666654 34679999999998776554432   2      356677777654

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.81  E-value=0.65  Score=26.87  Aligned_cols=62  Identities=10%  Similarity=0.052  Sum_probs=39.0

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeC----CHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVEL----IPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ..++||-. -|+|+++..+.+.+ ..+.+|+++|.    +...+...+.......     ..+++++.+|..+
T Consensus        15 ~~k~iLVT-G~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~d~~d   81 (341)
T d1sb8a_          15 QPKVWLIT-GVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQ-----WSNFKFIQGDIRN   81 (341)
T ss_dssp             SCCEEEEE-TTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHH-----HTTEEEEECCTTS
T ss_pred             CCCEEEEe-cCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcc-----cCCeeEEeecccc
Confidence            33456654 58999999998865 34568999985    3334444444333222     3467888888765

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=87.53  E-value=0.65  Score=25.95  Aligned_cols=64  Identities=14%  Similarity=0.087  Sum_probs=35.6

Q ss_pred             cCCCCCeEEEecCCCChHHHHHHHHhCC-Cc-eEEEEeCC---HHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          13 NLKPGAKVLDIGSGSGYLTACFADLVGS-NG-EVTAVELI---PEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        13 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~-~~-~v~~~D~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      .+.|+..+|-.| |+|.++..+++.+.. +. +++.+--+   .+..+...+.+...+      .++.++..|+.+
T Consensus         5 ~~~p~gt~lVTG-gs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g------~~v~~~~~Dv~d   73 (259)
T d2fr1a1           5 EWKPTGTVLVTG-GTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALG------ARTTVAACDVTD   73 (259)
T ss_dssp             CCCCCSEEEEET-TTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTT------CEEEEEECCTTC
T ss_pred             ccCCcCEEEEEC-CCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhcc------ccccccccccch
Confidence            356777888777 667777777665432 22 46554322   222333333333333      467888888765

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=87.52  E-value=1.4  Score=24.54  Aligned_cols=58  Identities=14%  Similarity=0.075  Sum_probs=38.2

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|-.|++ +.++..+++.+ ..+.+|+.++.+.+.++...+   ..+      .++.++..|+.+
T Consensus         4 ~gK~alItGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~------~~~~~~~~Dls~   62 (241)
T d2a4ka1           4 SGKTILVTGAA-SGIGRAALDLFAREGASLVAVDREERLLAEAVA---ALE------AEAIAVVADVSD   62 (241)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---TCC------SSEEEEECCTTS
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---HcC------CceEEEEecCCC
Confidence            46677777766 55556665554 456799999999976654433   333      456777888765

>d2dpma_ c.66.1.28 (A:) DNA methylase DpnM {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N6 adenine-specific DNA methylase, DAM
domain: DNA methylase DpnM
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=87.26  E-value=0.99  Score=25.43  Aligned_cols=46  Identities=13%  Similarity=0.187  Sum_probs=33.1

Q ss_pred             HHHHHhhcCCC-CCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHH
Q psy8023           6 ALELLKDNLKP-GAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQF   56 (88)
Q Consensus         6 ~~~~~~~~~~~-~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~   56 (88)
                      ++..+...+++ -.+.+|..||.|.+...+.    + .+++.-|+++..+..
T Consensus        15 l~~~i~~~~p~~~~~yvEpF~Gggav~~~~~----~-~~~viND~n~~lin~   61 (275)
T d2dpma_          15 LLPVIRELIPKTYNRYFEPFVGGGALFFDLA----P-KDAVINDFNAELINC   61 (275)
T ss_dssp             GHHHHHHHSCSSCSCEEETTCTTCHHHHHHC----C-SEEEEEESCHHHHHH
T ss_pred             HHHHHHHhcCcccCEEEeeCCCHHHHHhhhc----c-CcEEEEeCCHHHHHH
Confidence            44555656665 4689999999998866542    2 368999999987654

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=86.95  E-value=0.67  Score=24.93  Aligned_cols=44  Identities=5%  Similarity=-0.024  Sum_probs=28.8

Q ss_pred             CeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhh
Q psy8023          18 AKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQ   62 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~   62 (88)
                      ++|--+|+|+=+.++...... .+.+|+..|.+++.++.+.+++.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~-~G~~V~l~D~~~~~l~~~~~~i~   48 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSAS-KGTPILMKDINEHGIEQGLAEAA   48 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHH-TTCCEEEECSSHHHHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHh-CCCeEEEEECCHHHHhhhhhhhh
Confidence            457778886433333322222 35689999999999888777654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.84  E-value=1.5  Score=24.38  Aligned_cols=43  Identities=21%  Similarity=0.143  Sum_probs=29.2

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHH
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      +++++|--|++ +.++..+++.+ ..+.+|+.+|.+++.++...+
T Consensus         4 ~GK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   47 (242)
T d1cyda_           4 SGLRALVTGAG-KGIGRDTVKALHASGAKVVAVTRTNSDLVSLAK   47 (242)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            57788877755 44556665543 346799999999876655544

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.75  E-value=0.49  Score=27.00  Aligned_cols=58  Identities=14%  Similarity=0.067  Sum_probs=36.2

Q ss_pred             eEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          19 KVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +||-.| |+|+++..+.+.+ ..+.+|+++|.......  .+++....    ...+++++.+|+.+
T Consensus         2 ~vLItG-~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~--~~~l~~~~----~~~~~~~~~~Dl~d   60 (321)
T d1rpna_           2 SALVTG-ITGQDGAYLAKLLLEKGYRVHGLVARRSSDT--RWRLRELG----IEGDIQYEDGDMAD   60 (321)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCCSSCC--CHHHHHTT----CGGGEEEEECCTTC
T ss_pred             EEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCccc--HHHHHHhc----ccCCcEEEEccccC
Confidence            455444 6799999988865 34668999997542111  12222222    24578899998875

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.39  E-value=2  Score=23.93  Aligned_cols=44  Identities=16%  Similarity=0.184  Sum_probs=30.3

Q ss_pred             CCCeEEEecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHh
Q psy8023          16 PGAKVLDIGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQFTHYN   60 (88)
Q Consensus        16 ~~~~vlD~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~   60 (88)
                      +++++|--|++.| ++..+++.+ ..+.+|+.+|.+++.++.+.+.
T Consensus         4 ~gK~~lITGas~G-IG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~   48 (242)
T d1ulsa_           4 KDKAVLITGAAHG-IGRATLELFAKEGARLVACDIEEGPLREAAEA   48 (242)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            4667777776554 566666554 3467999999999877766553

>d1yf3a1 c.66.1.28 (A:1-259) DNA methylase T4DAM {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N6 adenine-specific DNA methylase, DAM
domain: DNA methylase T4DAM
species: Bacteriophage T4 [TaxId: 10665]

Probab=84.25  E-value=0.34  Score=27.14  Aligned_cols=48  Identities=19%  Similarity=0.237  Sum_probs=35.6

Q ss_pred             HHHHHhhcCCCCCeEEEecCCCChHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy8023           6 ALELLKDNLKPGAKVLDIGSGSGYLTACFADLVGSNGEVTAVELIPEVLQFTHY   59 (88)
Q Consensus         6 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (88)
                      ++..+...+++..+.+|..||.|.+...+      ..+++.-|+++..+..-+.
T Consensus        14 l~~~i~~~~p~~~~yvEPF~Gggav~~~~------~~~~v~ND~n~~lin~~~~   61 (259)
T d1yf3a1          14 LLPELKSHFPKYNRFVDLFCGGLSVSLNV------NGPVLANDIQEPIIEMYKR   61 (259)
T ss_dssp             THHHHHHTCCCCSEEEETTCTTCTTGGGS------CSSEEEECSCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCeEEeecccHHHHHhcc------CCCEEEecCCHHHHHHHHH
Confidence            45666666777789999999999975532      2358999999988765443

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=83.15  E-value=2  Score=22.82  Aligned_cols=49  Identities=18%  Similarity=0.135  Sum_probs=28.7

Q ss_pred             CCCCCeEEEecCC---CChHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhhhc
Q psy8023          14 LKPGAKVLDIGSG---SGYLTACFADLVGSNGEVTAVELIPEVLQFTHYNIQQG   64 (88)
Q Consensus        14 ~~~~~~vlD~g~G---~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~   64 (88)
                      +.++..|+-+..|   .|..++.+++..  +.+++++--++...+...+..+..
T Consensus        26 ~~~g~~vli~~ga~g~vG~~aiqlAk~~--Ga~vI~~v~~~~~~~~~~~~~~~l   77 (189)
T d1gu7a2          26 LTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKEL   77 (189)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCchHHHHHHHHHhhc--CCeEEEEEecccccchHHhhhhhc
Confidence            5677777776333   466777888887  568888754433333333333333

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=82.91  E-value=2.5  Score=23.46  Aligned_cols=61  Identities=13%  Similarity=-0.019  Sum_probs=39.0

Q ss_pred             CCCeEEEecCCCC-hHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          16 PGAKVLDIGSGSG-YLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        16 ~~~~vlD~g~G~G-~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +++++|--|++.+ +++..+++.+ ..+.+|+..+.++...+.+.+.....+       +..++..|+.+
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~D~~~   69 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG-------GALLFRADVTQ   69 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT-------CCEEEECCTTC
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccC-------cccccccccCC
Confidence            6788999886542 3444444433 246689999999877777766655433       34566677654

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.52  E-value=2.3  Score=22.85  Aligned_cols=38  Identities=21%  Similarity=0.370  Sum_probs=23.4

Q ss_pred             eEEEecCCCChHHHHHHHHhC-CCceEEEEeCCHHHHHHHH
Q psy8023          19 KVLDIGSGSGYLTACFADLVG-SNGEVTAVELIPEVLQFTH   58 (88)
Q Consensus        19 ~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~   58 (88)
                      +|--+|+|  +++..++..+. .+.+|+++|++++.++..+
T Consensus         2 kI~ViGlG--~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln   40 (202)
T d1mv8a2           2 RISIFGLG--YVGAVCAGCLSARGHEVIGVDVSSTKIDLIN   40 (202)
T ss_dssp             EEEEECCS--TTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             EEEEECCC--HhHHHHHHHHHhCCCcEEEEeCCHHHHHHhc
Confidence            45556555  44444433321 3458999999998877654

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=82.29  E-value=2.7  Score=23.38  Aligned_cols=55  Identities=11%  Similarity=-0.034  Sum_probs=36.5

Q ss_pred             ecCCCChHHHHHHHHhC-CCceEEEEeC-CHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          23 IGSGSGYLTACFADLVG-SNGEVTAVEL-IPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        23 ~g~G~G~~~~~l~~~~~-~~~~v~~~D~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +--|++.++..+++.+. .+.+|+..+. +++.++...+.++..+      .++.++..|+.+
T Consensus         6 ITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g------~~~~~~~~Dv~~   62 (244)
T d1edoa_           6 VTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYG------GQAITFGGDVSK   62 (244)
T ss_dssp             ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHT------CEEEEEECCTTS
T ss_pred             EeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcC------CcEEEEeCCCCC
Confidence            34455667777766553 3567877765 6667777777776654      467778888765

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=81.80  E-value=1.2  Score=22.73  Aligned_cols=35  Identities=37%  Similarity=0.499  Sum_probs=24.8

Q ss_pred             CCeEEEecCCCChHHHH-HHHHhCCCceEEEEeCCH
Q psy8023          17 GAKVLDIGSGSGYLTAC-FADLVGSNGEVTAVELIP   51 (88)
Q Consensus        17 ~~~vlD~g~G~G~~~~~-l~~~~~~~~~v~~~D~~~   51 (88)
                      +++|+-+|+|...+... -+...+++.+|+.+|.++
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            67999999997775432 233335677899998765

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=81.10  E-value=1.2  Score=25.83  Aligned_cols=58  Identities=17%  Similarity=0.251  Sum_probs=33.8

Q ss_pred             CeEEEecCCCChHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          18 AKVLDIGSGSGYLTACFADLV---GSNGEVTAVELIPEVLQFTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        18 ~~vlD~g~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      ++||-.| |+|+++..+.+.+   +...+++++|.....-  -..+....     ...+++++.+|+.+
T Consensus         3 mkILVTG-gtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~--~~~~~~~~-----~~~~i~~~~~Di~d   63 (346)
T d1oc2a_           3 KNIIVTG-GAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAG--NKANLEAI-----LGDRVELVVGDIAD   63 (346)
T ss_dssp             SEEEEET-TTSHHHHHHHHHHHHHCTTCEEEEEECCCTTC--CGGGTGGG-----CSSSEEEEECCTTC
T ss_pred             CEEEEeC-CCcHHHHHHHHHHHHCCCCeEEEEEeCCCccc--cHHHHHHh-----hcCCeEEEEccCCC
Confidence            4566544 8999998887754   2345688888422100  01111111     24688999999865

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=80.83  E-value=2.2  Score=24.87  Aligned_cols=58  Identities=17%  Similarity=0.107  Sum_probs=30.0

Q ss_pred             ecCCCChHHHHHHHHh-CCCceEEEEeCCHHHHH--HHHHhhhhcCCCCCCCcceEEeeCCccc
Q psy8023          23 IGSGSGYLTACFADLV-GSNGEVTAVELIPEVLQ--FTHYNIQQGNPELLPNIKFEPQTGEGDI   83 (88)
Q Consensus        23 ~g~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (88)
                      +--|+|+++..+.+++ ..+.+|+++|-......  ...+......   ....+++++.+|+.+
T Consensus         6 ITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~d   66 (357)
T d1db3a_           6 ITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPH---TCNPKFHLHYGDLSD   66 (357)
T ss_dssp             EETTTSHHHHHHHHHHHHTTCEEEEECC------------------------CCEEECCCCSSC
T ss_pred             EeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhh---hcCCCeEEEEeecCC
Confidence            4457799998887765 23568999997543221  1111111100   124578899999865

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.67  E-value=1.7  Score=25.19  Aligned_cols=36  Identities=17%  Similarity=0.195  Sum_probs=26.9

Q ss_pred             CCCCCeEEEecCCCChHHHHHHHHhC-CCceEEEEeCC
Q psy8023          14 LKPGAKVLDIGSGSGYLTACFADLVG-SNGEVTAVELI   50 (88)
Q Consensus        14 ~~~~~~vlD~g~G~G~~~~~l~~~~~-~~~~v~~~D~~   50 (88)
                      ..++++||-.| |+|+++..+...+- .+-+|+++|..
T Consensus        12 ~~~nMKILVTG-gsGfIGs~lv~~L~~~g~~V~~~d~~   48 (363)
T d2c5aa1          12 PSENLKISITG-AGGFIASHIARRLKHEGHYVIASDWK   48 (363)
T ss_dssp             TTSCCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            34688999555 99999999877642 34589999853

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=80.62  E-value=3.1  Score=22.95  Aligned_cols=50  Identities=14%  Similarity=0.050  Sum_probs=32.2

Q ss_pred             CCCeEEEecCCCC-hHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhhhcC
Q psy8023          16 PGAKVLDIGSGSG-YLTACFADLV-GSNGEVTAVELIPEVLQFTHYNIQQGN   65 (88)
Q Consensus        16 ~~~~vlD~g~G~G-~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~   65 (88)
                      +++++|--|++.| +++..+++.+ ..+.+|+..+.++...+.+.+.....+
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~   55 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLG   55 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcC
Confidence            5778888876552 3333333322 246689999999887777777666544