Psyllid ID: psy8029

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690---
Protein Sequence
MESSLPLILRLTKRSNSLEIDCSHFVGVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNISHVDTMYPYLNHLELIDSEKIICHGSTKPLNGILLKNIQNTKT
Secondary Structure (PSIPRED)
ccccccHHHHcccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccHHHHcccccccEEEccccccccccHHHccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEEcccccccccccHHHccccccccEEEccccccccccHHHHcccccccEEccccccccccccHHHHcccccccEEEccccccccccHHHHcccccccEEEcccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccccccccHHHcccccEEEccccccccccccHHHHHHHHHHHcHHHHHHHHccccccEEccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHccccccccHcccccccHHHHccccccccccHHHHccccEEEEccccccccccccccccccccccEEEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEEccccccccccHHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccHHHcccccccEEEcccccccccHHHHHccccccEEEEcccccccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccEEEcccccccccccHHHHHHHHHccccccccHHHcccccccccccccccccccccHHHccccccccccccccHHcccccccEEEccccccccccccccHHHHHHHHHHEEEEcccccccccccHHHcccccccEEEccccccccccHHHccccccEEEEccccccccccccccccHHHHHHHccc
Coil and Loop (DISEMBL)
MESSLPLILRLTKrsnsleidcshfvgvenssssngsiydrlpeqnlgpfnavtftfcplpdenFISLFSKLNITTINtlafsnspsnvgvlsppyfdglHFVKHILLSHNkeitglhkdifkgtpqleslnlrgnsiTELYSGvfqyvpklqvldlgsndvaymdpeIFKNLTSLRILNLDHNQLINLTRAIfnnvpnlrsldisgnnisilpsgvfSDLRKLQTFyansnrfqmfpKDLFAEMKYLQVIKISYHkdslkelpsglfanlpllntvilgessiaelpsdlfwnstnitnivltghkkltslpstlfrDCKKLVKLELQRNKLKYLPENLFESLKELYTLNlknnqlenitslvglsglnsldlSWNQLEQINLIAfdglsslntvdlshnlltfdeyqygysplkqcvNLETINLSYNRISSLFDDWISSMTSLKeldlrhnnfsfipdqldsivsnkltldlsfnqiAIVDLRTLEIKAaaqdpnedstmVARSANIVilndnpiacncsnydLIRFVSKKMTKTVYQMLELVTDNlecfgnagvginsvrpenltcdtkpcparcycnfspyysimsvncssaslthmpdylpvtyedkkATSIQLILHnnsinhflesppesyklitdldlsynnishvdtmypylnhlelidsekiichgstkplngillkniqntkt
Flexible Loop (DISEMBL)
MESSLPLILRLTKRSNSLEIDCSHFVGVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAaaqdpnedstMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNISHVDTMYPYLNHLELIDSEKIICHGstkplngillkniqntkt
Low Complexity Region (SEG)
MESSLPLILRLTKRSNSLEIDCSHFvgvenssssngsIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNISHVDTMYPYLNHLELIDSEKIICHGSTKPLNGILLKNIQNTKT
Disordered region (IsUnstruct)
*********************************************NLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAA*********MVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNISHVDTMYPYLNHLELIDSEKIICHGSTKPLNGILLKN******
Disordered Region (DISOPRED)
**SSLPLILRLTKRSNSLEIDCSHFVGVENSSSS******RLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNISHVDTMYPYLNHLELIDSEKIICHGSTKPLNGILLKNIQNT**
Disordered Region (DISEMBL)
MESSLPLILRLTKRSNSLEIDCSHFVGVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNISHVDTMYPYLNHLELIDSEKIICHGSTKPLNGILLKNIQNTKT
Disordered Region (DISPRO)
**SSLPLILRLTKRSNSLEIDCSHFVGVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNISHVDTMYPYLNHLELIDSEKIICHGSTKPLNGILLKNIQNT**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESSLPLILRLTKRSNSLEIDCSHFVGVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNISHVDTMYPYLNHLELIDSEKIICHGSTKPLNGILLKNIQNTKT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	693	2.2.26 [Sep-21-2011]
P08953	1097	Protein toll OS=Drosophil	yes	N/A	0.875	0.553	0.306	3e-60
O02833	605	Insulin-like growth facto	N/A	N/A	0.670	0.768	0.262	8e-31
P35858	605	Insulin-like growth facto	yes	N/A	0.692	0.793	0.261	8e-31
Q9DBB9	547	Carboxypeptidase N subuni	yes	N/A	0.476	0.603	0.303	9e-30
P40197	560	Platelet glycoprotein V O	no	N/A	0.516	0.639	0.292	1e-29
Q8R5M3	578	Leucine-rich repeat-conta	yes	N/A	0.492	0.589	0.292	7e-29
Q80X72	579	Leucine-rich repeat-conta	no	N/A	0.493	0.590	0.268	3e-28
P70389	603	Insulin-like growth facto	no	N/A	0.542	0.623	0.274	4e-27
O08770	567	Platelet glycoprotein V O	no	N/A	0.561	0.686	0.273	4e-27
Q8TF66	581	Leucine-rich repeat-conta	no	N/A	0.406	0.485	0.292	4e-27

>sp|P08953|TOLL_DROME Protein toll OS=Drosophila melanogaster GN=Tl PE=1 SV=1

 Score =  233 bits (595), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 201/655 (30%), Positives = 321/655 (49%), Gaps = 48/655 (7%)

Query: 39  YDRLPEQ-NLGPFNAVTFTFCPLPDENFI-SLFSKLNITTINTLAFSNSPSNVGV-LSPP 95
           Y +LP++  +G  + V    C LP    I S+   L I +  TL F +   N+G+ ++  
Sbjct: 87  YQQLPKKLRIGEVDRVQMRRCMLPGHTPIASILDYLGIVSPTTLIFESD--NLGMNITRQ 144

Query: 96  YFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVL 155
           + D LH +K    +  + +T +  ++      L  L LR N I E+ S +F  +  L+ +
Sbjct: 145 HLDRLHGLKRFRFT-TRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESI 202

Query: 156 DLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPS 215
           + GSN +  M   IF  +  L+ LNL  NQL NLT+  F    ++  +DI  N I  LP 
Sbjct: 203 EFGSNKLRQMPRGIFGKMPKLKQLNLWSNQLHNLTKHDFEGATSVLGIDIHDNGIEQLPH 262

Query: 216 GVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLN 275
            VF+ L  +     ++N F+  P+ LF   K+L  +++  ++  L  LPS LFAN P L 
Sbjct: 263 DVFAHLTNVTDINLSANLFRSLPQGLFDHNKHLNEVRLMNNRVPLATLPSRLFANQPELQ 322

Query: 276 TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY 335
            + L  + +  LP DLF +ST ITNI L G   L +LP+TL      L+ L+L  N+L +
Sbjct: 323 ILRL-RAELQSLPGDLFEHSTQITNISL-GDNLLKTLPATLLEHQVNLLSLDLSNNRLTH 380

Query: 336 LPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQINLIAF---DGL 390
           LP++LF     L  L L++N L  I+  +   L  L +L +S N+L  I+  AF   +GL
Sbjct: 381 LPDSLFAHTTNLTDLRLEDNLLTGISGDIFSNLGNLVTLVMSRNRLRTIDSRAFVSTNGL 440

Query: 391 SSL----NTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLK 446
             L    N +DL   LL         SP      L T+NL  N I  +++DW ++M  L+
Sbjct: 441 RHLHLDHNDIDLQQPLLDIMLQTQINSPFGYMHGLLTLNLRNNSIIFVYNDWKNTMLQLR 500

Query: 447 ELDLRHNNFSFIP-DQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVAR 505
           ELDL +NN S +  + L  +  N+L ++++ N+I  + L           P +       
Sbjct: 501 ELDLSYNNISSLGYEDLAFLSQNRLHVNMTHNKIRRIAL-----------PEDVHLGEGY 549

Query: 506 SANIVI--LNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGIN 560
           + N+V   LNDNP+ C+C+    I+ V         +  +L TD L C       G  + 
Sbjct: 550 NNNLVHVDLNDNPLVCDCTILWFIQLVRGVHKPQYSRQFKLRTDRLVCSQPNVLEGTPVR 609

Query: 561 SVRPENLTC--------DTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDK 612
            + P+ L C          + CP  C C+   Y   + +NC S +LTH+P  LP  +++ 
Sbjct: 610 QIEPQTLICPLDFSDDPRERKCPRGCNCHVRTYDKALVINCHSGNLTHVP-RLPNLHKNM 668

Query: 613 KATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNIS--HVDTMYPYLNHLEL 665
           +   ++L L NN++     +    Y+ +T L L+ NN++   VD +   L HL++
Sbjct: 669 QL--MELHLENNTLLRLPSANTPGYESVTSLHLAGNNLTSIDVDQLPTNLTHLDI 721

Component of the extracellular signaling pathway that establishes the dorsal-ventral pathway of the embryo. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Promotes heterophilic cellular adhesion. Spz C-106 in the hemolymph controls expression of the antifungal peptide Drosomycin (Drs) by acting as a ligand of Tl and inducing an intracellular signaling pathway.
Drosophila melanogaster (taxid: 7227)

>sp|O02833|ALS_PAPHA Insulin-like growth factor-binding protein complex acid labile subunit OS=Papio hamadryas GN=IGFALS PE=2 SV=1

 Score =  135 bits (341), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 135/515 (26%), Positives = 222/515 (43%), Gaps = 50/515 (9%)

Query: 62  DENFISLFSKLNITTINTLAFSN-SPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKD 120
           D N +S         +++LAF N     +G L P    GL  + H+ L  N ++  L   
Sbjct: 82  DSNNLSSIPPAAFRNLSSLAFLNLQGGQLGSLEPQALLGLENLCHLHLERN-QLRSLAVG 140

Query: 121 IFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILN 180
            F  TP L  L L  N ++ L  G+F+ +  L  L+LG N +A +    F+ L  LR L 
Sbjct: 141 TFAYTPALALLGLSNNRLSRLEDGLFEGLGNLWDLNLGWNSLAVLPDAAFRGLGGLRELV 200

Query: 181 LDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKD 240
           L  N+L  L  A+F+ +  LR LD+S N +  + + VF+ L +LQ  Y + N        
Sbjct: 201 LAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFAQLPRLQKLYLDRNLIAAVAPG 260

Query: 241 LFAEMKYLQVIKISYHK----------------------DSLKELPSGLFANLPLLNTVI 278
            F  +K L+ + +S+++                      +++  L    F +L  L  + 
Sbjct: 261 AFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFEDLHFLEELQ 320

Query: 279 LGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE 338
           LG + I +L    F     +  + L  H +L  +    F     +  + L  N L+ LPE
Sbjct: 321 LGHNRIRQLAERSFEGLGQLEVLTLD-HNQLQEVKVGAFLGLTNVAVMNLSGNCLRNLPE 379

Query: 339 NLFESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTV 396
            +F  L +L++L+L+ + L  I   +  GLSGL  L L  N L  I   +  GL+ L  +
Sbjct: 380 QVFRGLGKLHSLHLEGSCLGRIRPHTFAGLSGLRRLFLKDNGLVGIEEQSLWGLAELLEL 439

Query: 397 DLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFS 456
           DL+ N LT   +Q      +    LE + LS+NR++ L  D +  +     LD+ HN   
Sbjct: 440 DLTSNQLTHLPHQL----FQGLGKLEYLLLSHNRLAELPADALGPLQRAFWLDVSHNRLE 495

Query: 457 FIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNP 516
            +P  L + +     L+L  N      LRT       Q P  +          + L  NP
Sbjct: 496 ALPGSLLASLGRLRYLNLRNN-----SLRTF----TPQPPGLER---------LWLEGNP 537

Query: 517 IACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLEC 551
             C+C     +R  + +    V + ++ + +  +C
Sbjct: 538 WDCSCP-LKALRDFALQNPSAVPRFVQAICEGDDC 571

Involved in protein-protein interactions that result in protein complexes, receptor-ligand binding or cell adhesion.

Papio hamadryas (taxid: 9557)

>sp|P35858|ALS_HUMAN Insulin-like growth factor-binding protein complex acid labile subunit OS=Homo sapiens GN=IGFALS PE=1 SV=1

 Score =  135 bits (341), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 140/536 (26%), Positives = 228/536 (42%), Gaps = 56/536 (10%)

Query: 41  RLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSN-SPSNVGVLSPPYFDG 99
           RLP+   G   A+        D N +S         +++L F N     +G L P    G
Sbjct: 67  RLPDGVPGGTQALWL------DGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLG 120

Query: 100 LHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGS 159
           L  + H+ L  N ++  L    F  TP L SL L  N ++ L  G+F+ +  L  L+LG 
Sbjct: 121 LENLCHLHLERN-QLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGW 179

Query: 160 NDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFS 219
           N +A +    F+ L SLR L L  N+L  L  A+F+ +  LR LD+S N +  + + VF 
Sbjct: 180 NSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFV 239

Query: 220 DLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHK---------------------- 257
            L +LQ  Y + N         F  +K L+ + +S+++                      
Sbjct: 240 QLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSH 299

Query: 258 DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 317
           +++  L    F +L  L  + LG + I +L    F     +  + L  H +L  + +  F
Sbjct: 300 NAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLD-HNQLQEVKAGAF 358

Query: 318 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLS 375
                +  + L  N L+ LPE +F  L +L++L+L+ + L  I   +  GLSGL  L L 
Sbjct: 359 LGLTNVAVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLK 418

Query: 376 WNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLF 435
            N L  I   +  GL+ L  +DL+ N LT   ++      +    LE + LS NR++ L 
Sbjct: 419 DNGLVGIEEQSLWGLAELLELDLTSNQLTHLPHRL----FQGLGKLEYLLLSRNRLAELP 474

Query: 436 DDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQD 495
            D +  +     LD+ HN    +P+ L + +     L L  N      LRT       Q 
Sbjct: 475 ADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNN-----SLRTF----TPQP 525

Query: 496 PNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLEC 551
           P  +          + L  NP  C C     +R  + +    V + ++ + +  +C
Sbjct: 526 PGLER---------LWLEGNPWDCGCP-LKALRDFALQNPSAVPRFVQAICEGDDC 571

Involved in protein-protein interactions that result in protein complexes, receptor-ligand binding or cell adhesion.

Homo sapiens (taxid: 9606)

>sp|Q9DBB9|CPN2_MOUSE Carboxypeptidase N subunit 2 OS=Mus musculus GN=Cpn2 PE=1 SV=2

 Score =  132 bits (332), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 111/366 (30%), Positives = 171/366 (46%), Gaps = 36/366 (9%)

Query: 94  PPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQ 153
           PP+   + FV+          T +    F G+P L  +      +  L    F  +P+LQ
Sbjct: 48  PPHITDIVFVE-------TAFTTVRTRAFSGSPNLTKVVFLNTQVRHLEPDAFGGLPRLQ 100

Query: 154 VLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISIL 213
            L++  + V+ +   IF NL+SL  L LD ++L  L   +F ++  L SL + GN +  L
Sbjct: 101 DLEITGSPVSNLSAHIFSNLSSLEKLTLDFDRLAGLPEDLFCHMDILESLQLQGNQLRTL 160

Query: 214 PSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPL 273
           P  +F  LR L+T     N     PK  F  +  LQ++K+S   + L  LP G   +L  
Sbjct: 161 PGRLFQSLRDLRTLNLAQNLLTQLPKGAFQSLTGLQMLKLS--NNMLARLPEGALGSLSS 218

Query: 274 LNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKL 333
           L  + L  ++I EL   LF    ++  + L  H  +  LP +LF     L  L L+ N L
Sbjct: 219 LQELFLDGNAITELSPHLFSQLFSLEMLWLQ-HNAICHLPVSLFSSLHNLTFLSLKDNAL 277

Query: 334 KYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSL 393
           + LPE LF            +NQ           GL  L LS+NQLE I   AF  LS L
Sbjct: 278 RTLPEGLF-----------AHNQ-----------GLLHLSLSYNQLETIPEGAFTNLSRL 315

Query: 394 NTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHN 453
            ++ LSHN +T D  ++ +  L+Q V L   +L  N +++L      +++ L+ L+L  N
Sbjct: 316 VSLTLSHNAIT-DLPEHVFRNLEQLVKL---SLDSNNLTALHPALFHNLSRLQLLNLSRN 371

Query: 454 NFSFIP 459
             + +P
Sbjct: 372 QLTTLP 377

The 83 kDa subunit binds and stabilizes the catalytic subunit at 37 degrees Celsius and keeps it in circulation. Under some circumstances it may be an allosteric modifier of the catalytic subunit.

Mus musculus (taxid: 10090)

>sp|P40197|GPV_HUMAN Platelet glycoprotein V OS=Homo sapiens GN=GP5 PE=1 SV=1

 Score =  132 bits (331), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 182/369 (49%), Gaps = 11/369 (2%)

Query: 90  GVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYV 149
           GVL    F G+  ++ +++S +  I+ +    F    +L++L L  N IT L   +   +
Sbjct: 63  GVLQSQSFSGMTVLQRLMIS-DSHISAVAPGTFSDLIKLKTLRLSRNKITHLPGALLDKM 121

Query: 150 PKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN 209
             L+ L L  N +  +D  +F+ L +L+ L L+ NQL  L  ++F N+ NL+ LD+SGNN
Sbjct: 122 VLLEQLFLDHNALRGIDQNMFQKLVNLQELALNQNQLDFLPASLFTNLENLKLLDLSGNN 181

Query: 210 ISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFA 269
           ++ LP G+     KL+    +SNR       L   +  L   ++ +H++ ++ +  G F 
Sbjct: 182 LTHLPKGLLGAQAKLERLLLHSNRLVSLDSGLLNSLGAL--TELQFHRNHIRSIAPGAFD 239

Query: 270 NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQ 329
            LP L+++ L  + +A LPS LF +S N+T + L     L  LP  LF +   L +L L 
Sbjct: 240 RLPNLSSLTLSRNHLAFLPSALFLHSHNLTLLTLF-ENPLAELPGVLFGEMGGLQELWLN 298

Query: 330 RNKLKYLPENLFESLKELYTLNLK-NNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIA 386
           R +L+ LP   F +L  L  L +  + +L  +   +  GL  L  L L  N L  +    
Sbjct: 299 RTQLRTLPAAAFRNLSRLRYLGVTLSPRLSALPQGAFQGLGELQVLALHSNGLTALPDGL 358

Query: 387 FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLK 446
             GL  L  V L  N L         +  +   +LE++ L +N++ +L  D   ++  L 
Sbjct: 359 LRGLGKLRQVSLRRNRL----RALPRALFRNLSSLESVQLDHNQLETLPGDVFGALPRLT 414

Query: 447 ELDLRHNNF 455
           E+ L HN++
Sbjct: 415 EVLLGHNSW 423

The GPIb-V-IX complex functions as the vWF receptor and mediates vWF-dependent platelet adhesion to blood vessels. The adhesion of platelets to injured vascular surfaces in the arterial circulation is a critical initiating event in hemostasis.

Homo sapiens (taxid: 9606)

>sp|Q8R5M3|LRC15_RAT Leucine-rich repeat-containing protein 15 OS=Rattus norvegicus GN=Lrrc15 PE=2 SV=1

 Score =  129 bits (324), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 173/352 (49%), Gaps = 11/352 (3%)

Query: 111 NKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIF 170
           N  IT L +++F     L +L +  N ++ +  G F+ +  L+ L L +N +  +   +F
Sbjct: 62  NTHITELPENLFLNISALIALKMEKNELSTIMPGAFRNLGSLRYLSLANNKLRMLPIRVF 121

Query: 171 KNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYAN 230
           +++ +L  L L +NQL+ +  A F+   NLR L + GNN+  +P   F  L  L      
Sbjct: 122 QDVNNLESLLLSNNQLVQIQPAQFSQFSNLRELQLHGNNLESIPEEAFDHLVGLTKLNLG 181

Query: 231 SNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD 290
            N F      LF  +  LQV+++  H++ L ++P G F  L  L  + L E+ I  L   
Sbjct: 182 RNSFTHLSPRLFQHLGNLQVLRL--HENRLSDIPMGTFDALGNLQELALQENQIGTLSPG 239

Query: 291 LFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTL 350
           LF N+ N+  + L+ +  ++ LP  +F    +L KL L  N L+ L   +F  +  L  L
Sbjct: 240 LFHNNRNLQRLYLS-NNHISQLPPGIFMQLPQLNKLTLFGNSLRELSPGVFGPMPNLREL 298

Query: 351 NLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT-FDE 407
            L NN + ++   +   L+ L  L LS NQL  I+  AF+GL++L  + L  N L   D 
Sbjct: 299 WLYNNHITSLADNTFSHLNQLQVLILSHNQLTYISPGAFNGLTNLRELSLHTNALQDLDS 358

Query: 408 YQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP 459
             +     +   NL+ I+L  NR+  L     +++  L  + L++NN   +P
Sbjct: 359 NVF-----RSLANLQNISLQSNRLRQLPGSIFANVNGLTTIQLQNNNLENLP 405

Rattus norvegicus (taxid: 10116)

>sp|Q80X72|LRC15_MOUSE Leucine-rich repeat-containing protein 15 OS=Mus musculus GN=Lrrc15 PE=2 SV=1

 Score =  127 bits (319), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 183/383 (47%), Gaps = 41/383 (10%)

Query: 49  PFNAVTFTF-----CPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFV 103
           P+NA++          LP++ F      LNI+ +  +A     + +  + P  F  L  +
Sbjct: 52  PWNAMSLQILNTHITELPEDKF------LNISAL--IALKMEKNELANIMPGAFRNLGSL 103

Query: 104 KHILLSHNK-----------------------EITGLHKDIFKGTPQLESLNLRGNSITE 140
           +H+ L++NK                       ++  +    F     L+ L L GN++  
Sbjct: 104 RHLSLANNKLKNLPVRLFQDVNNLETLLLSNNQLVQIQPAQFSQFSNLKELQLYGNNLEY 163

Query: 141 LYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNL 200
           +  GVF ++  L  L+LG+N   ++ P +F++L +L++L L  N+L ++    F+ + NL
Sbjct: 164 IPEGVFDHLVGLTKLNLGNNGFTHLSPRVFQHLGNLQVLRLYENRLSDIPMGTFDALGNL 223

Query: 201 RSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSL 260
           + L +  N I  L  G+F + R LQ  Y ++N     P  +F ++ +L   K++   +SL
Sbjct: 224 QELALQENQIGTLSPGLFHNNRNLQRLYLSNNHISHLPPGIFMQLPHLN--KLTLFGNSL 281

Query: 261 KELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC 320
           KEL  G+F  +P L  + L  + I  LP + F +  N   +++  H +L+ +    F   
Sbjct: 282 KELSPGVFGPMPNLRELWLYNNHITSLPDNAF-SHLNQLQVLILSHNQLSYISPGAFNGL 340

Query: 321 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS--LVGLSGLNSLDLSWNQ 378
             L +L L  N L+ L  N+F SL  L  ++L+NN+L  +       ++GL ++ L  N 
Sbjct: 341 TNLRELSLHTNALQDLDGNVFRSLANLRNVSLQNNRLRQLPGSIFANVNGLMTIQLQNNN 400

Query: 379 LEQINLIAFDGLSSLNTVDLSHN 401
           LE + L  FD L +L  + L  N
Sbjct: 401 LENLPLGIFDHLGNLCELRLYDN 423

Mus musculus (taxid: 10090)

>sp|P70389|ALS_MOUSE Insulin-like growth factor-binding protein complex acid labile subunit OS=Mus musculus GN=Igfals PE=2 SV=1

 Score =  124 bits (310), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 116/423 (27%), Positives = 192/423 (45%), Gaps = 47/423 (11%)

Query: 73  NITTINTLAFSN---------SPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
           N+++I + AF N           S +  L P    GL  + H+ L  N  +  L   +F+
Sbjct: 85  NLSSIPSAAFQNLSSLDFLNLQGSWLRSLEPQALLGLQNLYHLHLERNL-LRSLAAGLFR 143

Query: 124 GTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH 183
            TP L SL+L  N +  L  G+F+ +  L  L+LG N +  +   +F+ L +L  L L  
Sbjct: 144 HTPSLASLSLGNNLLGRLEEGLFRGLSHLWDLNLGWNSLVVLPDTVFQGLGNLHELVLAG 203

Query: 184 NQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFA 243
           N+L  L  A+   +  LR LD+S N +  + + VF  L +LQ  Y + N         F 
Sbjct: 204 NKLTYLQPALLCGLGELRELDLSRNALRSVKANVFIHLPRLQKLYLDRNLITAVAPRAFL 263

Query: 244 EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVL 303
            MK L+ + +S+++                          +A L  D F     + +++ 
Sbjct: 264 GMKALRWLDLSHNR--------------------------VAGLLEDTFPGLLGL-HVLR 296

Query: 304 TGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE--NIT 361
             H  +TSL    F+D   L +L+L  N+++ L E  FE L +L  L L +NQ+    + 
Sbjct: 297 LAHNAITSLRPRTFKDLHFLEELQLGHNRIRQLGEKTFEGLGQLEVLTLNDNQIHEVKVG 356

Query: 362 SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQ--YGYSPLKQCV 419
           +  GL  +  ++LS N L  +    F GL  L+++ L H+ L         G S L++  
Sbjct: 357 AFFGLFNVAVMNLSGNCLRSLPEHVFQGLGRLHSLHLEHSCLGRIRLHTFAGLSGLRR-- 414

Query: 420 NLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
               + L  N ISS+ +  ++ ++ L ELDL  N  + +P QL   +     L LS NQ+
Sbjct: 415 ----LFLRDNSISSIEEQSLAGLSELLELDLTANQLTHLPRQLFQGLGQLEYLLLSNNQL 470

Query: 480 AIV 482
            ++
Sbjct: 471 TML 473

May have an important role in regulating the access of circulating IGFs to the tissues.

Mus musculus (taxid: 10090)

>sp|O08770|GPV_RAT Platelet glycoprotein V OS=Rattus norvegicus GN=Gp5 PE=3 SV=1

 Score =  124 bits (310), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 189/432 (43%), Gaps = 43/432 (9%)

Query: 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDV 162
           + HILL        L    F G   L+ L L  + I+ +  G F  + KL+ L L  N +
Sbjct: 52  LTHILLFRMDRGV-LQSHSFSGMTVLQRLMLSDSHISAIDPGTFNDLVKLKTLRLTRNKI 110

Query: 163 AYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLR 222
           +++   I   +  L  L LDHN L +L + +F  + NLR L ++ N +S LP+ +FS L 
Sbjct: 111 SHLPRAILDKMVLLEQLFLDHNALRDLDQNLFQKLLNLRDLCLNQNQLSFLPANLFSSLG 170

Query: 223 KLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES 282
           KL+    + N     P+ L      L+  K+  + + L  L SGL ANL  L  + L  +
Sbjct: 171 KLKVLDLSRNNLTHLPQGLLGAQIKLE--KLLLYSNRLMSLDSGLLANLGALTELRLERN 228

Query: 283 SIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFE 342
            +  +    F +  N++ + L+G+  L SLP  LF     L +L L  N L+ LPE LF 
Sbjct: 229 HLRSIAPGAFDSLGNLSTLTLSGN-LLESLPPALFLHVSWLTRLTLFENPLEELPEVLFG 287

Query: 343 SLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNL 402
                                  ++GL  L L+   L  +   AF  LS L T+ L+ N 
Sbjct: 288 E----------------------MAGLRELWLNGTHLRTLPAAAFRNLSGLQTLGLTRNP 325

Query: 403 LTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQL 462
           L        +  L +   L  + +  N +  L +D +  +  L+++ LRHN    +P  L
Sbjct: 326 LLSALPPGMFHGLTE---LRVLAVHTNALEELPEDALRGLGRLRQVSLRHNRLRALPRTL 382

Query: 463 DSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCS 522
              +S+ +T+ L  NQ     L+TL     A  P             V+L  NP  C+C 
Sbjct: 383 FRNLSSLVTVQLEHNQ-----LKTLPGDVFAALPQLTR---------VLLGHNPWLCDCG 428

Query: 523 NYDLIRFVSKKM 534
            +  ++++   +
Sbjct: 429 LWPFLQWLRHHL 440

The GPIb-V-IX complex functions as the vWF receptor and mediates vWF-dependent platelet adhesion to blood vessels. The adhesion of platelets to injured vascular surfaces in the arterial circulation is a critical initiating event in hemostasis.

Rattus norvegicus (taxid: 10116)

>sp|Q8TF66|LRC15_HUMAN Leucine-rich repeat-containing protein 15 OS=Homo sapiens GN=LRRC15 PE=1 SV=2

 Score =  123 bits (309), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 149/287 (51%), Gaps = 5/287 (1%)

Query: 122 FKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNL 181
           F     L+ L L GN +  +  G F ++  L  L+LG N + ++ P +F++L +L++L L
Sbjct: 145 FSQCSNLKELQLHGNHLEYIPDGAFDHLVGLTKLNLGKNSLTHISPRVFQHLGNLQVLRL 204

Query: 182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDL 241
             N+L ++    F+ + NL+ L +  N I +L  G+F +   LQ  Y ++N     P  +
Sbjct: 205 YENRLTDIPMGTFDGLVNLQELALQQNQIGLLSPGLFHNNHNLQRLYLSNNHISQLPPSV 264

Query: 242 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 301
           F  M+  Q+ +++   +SLKEL  G+F  +P L  + L ++ I+ LP ++F N   +  +
Sbjct: 265 F--MQLPQLNRLTLFGNSLKELSPGIFGPMPNLRELWLYDNHISSLPDNVFSNLRQLQVL 322

Query: 302 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 361
           +L+   +++ +    F    +L +L L  N L+ L  N+F  L  L  ++L+NN+L  + 
Sbjct: 323 ILS-RNQISFISPGAFNGLTELRELSLHTNALQDLDGNVFRMLANLQNISLQNNRLRQLP 381

Query: 362 S--LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFD 406
                 ++GL ++ L  NQLE + L  FD L  L  + L  N    D
Sbjct: 382 GNIFANVNGLMAIQLQNNQLENLPLGIFDHLGKLCELRLYDNPWRCD 428

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	693
242022031	1092	protein toll precursor, putative [Pedicu	0.914	0.580	0.318	1e-79
332031266	1016	Protein toll [Acromyrmex echinatior]	0.845	0.576	0.317	6e-70
157116467	1124	toll [Aedes aegypti] gi|108876451|gb|EAT	0.799	0.492	0.318	9e-68
31200499	1152	AGAP001004-PA [Anopheles gambiae str. PE	0.868	0.522	0.302	3e-67
22651844	1124	Toll-related protein [Aedes aegypti]	0.799	0.492	0.316	5e-67
383859012	1072	PREDICTED: protein toll-like [Megachile	0.784	0.507	0.312	2e-66
156545700	1050	PREDICTED: protein toll [Nasonia vitripe	0.852	0.562	0.306	1e-65
340712913	1095	PREDICTED: protein toll-like [Bombus ter	0.786	0.497	0.316	2e-65
195450953	1095	GK13544 [Drosophila willistoni] gi|19416	0.898	0.568	0.317	3e-65
345479829	1028	PREDICTED: protein toll [Nasonia vitripe	0.874	0.589	0.318	5e-65

>gi|242022031|ref|XP_002431445.1| protein toll precursor, putative [Pediculus humanus corporis] gi|212516733|gb|EEB18707.1| protein toll precursor, putative [Pediculus humanus corporis]

 Score =  304 bits (779), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 212/665 (31%), Positives = 345/665 (51%), Gaps = 31/665 (4%)

Query: 25  FVGVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSN 84
           ++ ++ + +++ + Y+ L    +GP  +V F  CPLP+  F +L   + +   + L F +
Sbjct: 85  YIQIQCTYATHFTDYNLLNGLKVGPVISVNFRLCPLPNVPFSNLTRSIGVNFTSALLFQS 144

Query: 85  SPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSG 144
             +    L   +F  L+ +  ++LS N  +T L +D+ +    L  L+LRGN++  ++  
Sbjct: 145 YRNLSNTLERKHFRDLNNLTRLVLSSNG-LTDLPEDLLQDLANLTWLDLRGNNM-HVHDN 202

Query: 145 VFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLD 204
            F  VPKLQ L+LG+N++  ++P +F+NL  L  LNL  NQL NL+R IF+++ NL+ LD
Sbjct: 203 FFNSVPKLQTLELGNNNLTRLEPGLFRNLKRLEHLNLWKNQLKNLSRDIFSHLTNLKELD 262

Query: 205 ISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELP 264
           +S N +  L   VF DL KL      +N F   P++LF+    L+V+++  ++ ++  LP
Sbjct: 263 VSSNGMENLSHDVFHDLPKLVRLSLYANNFSDVPENLFSNSINLEVLRLYDNRQTMV-LP 321

Query: 265 SGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 324
               +NL  L  V L  +++  +P ++ W S+ + N+ L G+  L ++   LFRD   L 
Sbjct: 322 DRFLSNLTRLKEVYLMRNNLQTVPENILWESSAVANLSLQGN-SLKNISENLFRDQFNLQ 380

Query: 325 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQI 382
            L+L  N L +LP+ +F++L +L  L L NN+L+ IT  V  GL+ L  LDL +N L  +
Sbjct: 381 TLDLSYNHLAHLPDRVFKNLNKLEFLRLGNNRLKTITQDVFQGLNKLELLDLEYNHLSYL 440

Query: 383 NLIAFDGLSSLNTVDLSHNLLTF----DEYQYGY---------SPLKQCVNLETINLSYN 429
           +  A   L  L     SHN+L+F       Q G+         SP + C+NLE + L+ N
Sbjct: 441 DSDALGHLEQLKHARFSHNMLSFLDDDGHPQGGFPYKDTFGNKSPFRHCINLEYLYLANN 500

Query: 430 RISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEI 489
            I+ +F DW   +  L+ LDL  NN  ++  Q    +S+ +++DL  N I IV+L  +E 
Sbjct: 501 SITEIFSDWRIVLVKLRVLDLSQNNIQYLVVQDVQFISDDVSVDLRQNNITIVNLYGVEA 560

Query: 490 KAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNL 549
            A  Q     +   ++    V+L  NP+ C+C  Y++IR+   K+   VY  + LV  NL
Sbjct: 561 LAVGQTTGLVNPRHSKRNVRVLLEGNPLKCDCQIYEMIRYFENKLESEVYVFVTLVPGNL 620

Query: 550 ECFGN---AGVGINSVRPENLTCDTKP----CPARCYCNFSPYYSIMSVNCSSASLTHMP 602
            C       G  +  V   +L CD  P    CP  C C        + VNC+  +LT +P
Sbjct: 621 TCHSPDVLKGSQVTRVDSHHLMCDLDPATYNCPKSCECKLRRADWGLIVNCTEKNLTEIP 680

Query: 603 DYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNISHVDT--MYPYL 660
             LP+    K     +L L+ N I     S  + Y+ +T L LS N I ++DT  + P +
Sbjct: 681 VELPIV---KYTNHTELFLNGNDIRTLPNSTFKGYENVTHLYLSNNRIENIDTGLLSPKI 737

Query: 661 NHLEL 665
             L L
Sbjct: 738 QQLAL 742

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332031266|gb|EGI70800.1| Protein toll [Acromyrmex echinatior]

 Score =  271 bits (694), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 197/620 (31%), Positives = 322/620 (51%), Gaps = 34/620 (5%)

Query: 52  AVTFTFCPLP-DENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSH 110
           ++ F  C LP +++   +   L +T +N L F +  +    L   + D    +K ++LS 
Sbjct: 30  SIFFYMCDLPTNKSLGEITQTLGVTEVNKLIFQSYKNLSFALVKHHLDDFENLKFLVLSS 89

Query: 111 NKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIF 170
           N  +T + KD+  G   L  LNLR N++  L +GVF Y P L+ ++LG+N +  ++   F
Sbjct: 90  NN-VTYVDKDLLAGLVNLTGLNLRDNNL-HLVTGVFNYTPGLEWIELGNNALRSIELGTF 147

Query: 171 KNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYAN 230
            NL +L +LNL  N L      IF+ +  L+SLD++GNN+  LP  +F+ L  L+    +
Sbjct: 148 DNLKNLTLLNLWKNHLTEPQSGIFDELIALKSLDLNGNNMIKLPDDIFAKLENLEVLNLS 207

Query: 231 SNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD 290
            N F   P++L      L  + +  +K ++  LP+  FANL  L  + L ++    LP D
Sbjct: 208 RNNFTHLPRNLLQNNTKLYTVSLFDNKRNMTTLPNKFFANLTELKVLKLRKNGFVTLPED 267

Query: 291 LFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTL 350
           LFW  T+++NI L     L +LP  +FRD KKL KLEL  N L+ LP+N+F +   L  L
Sbjct: 268 LFWGCTSLSNITLE-RNYLRTLPVHIFRDLKKLEKLELNFNDLETLPDNIFSNTNRLVNL 326

Query: 351 NLKNNQLENITSLV--GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEY 408
           +L  N++  I+  +  GL+ L  L++  NQL  I+  +F  L +L     S+N LT ++ 
Sbjct: 327 DLSKNRITFISRYLFNGLNALKELNMEENQLMTISSHSFSFLKALKIAKFSNNYLTLEDS 386

Query: 409 QYGY-------SPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQ 461
            + Y       SP   CV+LE + L+ N IS +F DWI S   L++LDL++NN S I  +
Sbjct: 387 YHEYPDPFGSKSPFYDCVSLEELYLANNNISKIFSDWILSDLGLRKLDLKYNNISLITTE 446

Query: 462 LDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNC 521
               VS  + +DL+ N+I  + LR+ E   + Q+   D+         +++NDNP+ C+C
Sbjct: 447 DLQFVSRDIEVDLTHNKIEHIFLRSAEQIVSYQEDAHDAK--------ILVNDNPLHCDC 498

Query: 522 SNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVG---INSVRPENLTC---DTKPCP 575
             YD +R++  KM   V    +++  NL C     +    + +++ E+LTC   ++  CP
Sbjct: 499 GLYDFLRYIEGKMHPNVPNYFQIIPGNLSCQSPKDLENEPVTNLKSESLTCIVENSNVCP 558

Query: 576 ARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILH--NNSINHFLESP 633
            +C C   P  S    +CS+ +L+ +P  +      K  +S Q  L+   N + H     
Sbjct: 559 KKCTCLVRPEGSAFIFDCSNKNLSSVPSDI-----KKPDSSFQFELNFSGNQLTHMPNLK 613

Query: 634 PESYKLITDLDLSYNNISHV 653
               + +  L LS+NNI  +
Sbjct: 614 AMGLEPVKKLILSHNNIDEI 633

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157116467|ref|XP_001658507.1| toll [Aedes aegypti] gi|108876451|gb|EAT40676.1| AAEL007613-PA [Aedes aegypti]

 Score =  265 bits (676), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 187/588 (31%), Positives = 304/588 (51%), Gaps = 34/588 (5%)

Query: 39  YDRLPEQNLGPFNAVTFTFCPLPDENFISLFSK-LNITTINTLAFSNSPSNVGV-LSPPY 96
           +  LP  N+G    V    CPLP    I  F K L +  +    + N   + GV L   +
Sbjct: 116 FSDLPTLNVGNTTQVKIIHCPLPQRQSIKQFIKFLGVNHVKDFWYQNYGKDFGVRLIRQH 175

Query: 97  FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
           F+G+H ++ + LS    I  +  D+F   P L+ L LR N + +L   VF  +  L +L+
Sbjct: 176 FEGMHDLEKLFLSSG--IEDIQPDLFADLPNLKWLILRSNHV-KLLHNVFDNLTNLIILE 232

Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSG 216
           LG+N +  ++P +FKN   LR LNL  NQL N+++  F     L+ LD+S N I  L S 
Sbjct: 233 LGANQITELEPGLFKNQRKLRHLNLWRNQLRNISKESFRGAETLQELDLSVNAIETLNSD 292

Query: 217 VFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNT 276
           VF+ L  L       NRF + P +L +E + L+  K   ++  L+ LP     NLP L +
Sbjct: 293 VFTLLPDLTVLNLGFNRFTVLPDNLLSENRKLREFKFINNQAPLQTLPEAFLGNLPQLKS 352

Query: 277 VILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYL 336
           VIL   S   LP+ LF  S+ IT++ L+ + +L S+P  L RD  +L  L L  N+L+ L
Sbjct: 353 VILNRCSFTHLPASLFRGSSEITHMDLS-YNQLGSVPELLLRDQLRLQDLNLAYNELESL 411

Query: 337 PENLFESLKELYTLNLKNNQLENITS--LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLN 394
           PE+L E+ +EL TL L  N+L N+++     L  L  L L+ N L  I+ + F    +L 
Sbjct: 412 PEHLLENTRELLTLRLSYNRLYNLSANIFASLDKLTELHLNDNFLHAIDRLTFSNTKALG 471

Query: 395 TVDLSHNLLTFDEYQY----------GYSPLKQCVNLETINLSYNRISSLFDDWISSMTS 444
            + + +N L+F ++ +            +P +   NL+ +NL  N I+++F DW  +   
Sbjct: 472 KLYMQNNHLSFHDFSFVLQEQDIADTDGTPFQYLENLQILNLRNNSITTIFRDWNYNNLH 531

Query: 445 LKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVA 504
           L+ELDL +NN S +       +S  + ++L+ N+I+ +DL+ +E    +Q   +DS +  
Sbjct: 532 LRELDLSYNNISTLSYLSLQFLSQDVRVNLTHNRISEIDLKDMEPIITSQRSQDDSKIY- 590

Query: 505 RSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNA---GVGINS 561
                V +NDNP+ CNC  +  ++++  ++   VY+ ++ V D+L C       GV ++ 
Sbjct: 591 -----VYVNDNPLNCNCVIFSFVQYLLNELDSAVYRRIQFVADDLRCSEPQNLEGVHVSK 645

Query: 562 VRPENLTC-------DTKPCPARCYCNFSPYYSIMSVNCSSASLTHMP 602
           ++ ++L C       + K CPA C C+  P    + VNC+   LT +P
Sbjct: 646 LQTKDLLCQLDQPGTEIKHCPANCSCHVRPLDRGVIVNCTRQGLTEIP 693

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|31200499|ref|XP_309197.1| AGAP001004-PA [Anopheles gambiae str. PEST] gi|17226676|gb|AAL37901.1|AF444780_1 Toll [Anopheles gambiae] gi|30178567|gb|EAA45376.1| AGAP001004-PA [Anopheles gambiae str. PEST]

 Score =  263 bits (672), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 201/664 (30%), Positives = 328/664 (49%), Gaps = 62/664 (9%)

Query: 39  YDRLPEQNLGPFNAVTFTFCPLPD-ENFISLFSKLNITTINTLAFSNSPSN--VGVLSPP 95
           ++++P+ ++G  N +T   CP P  ++ + L S L  T +  L   N+ ++     L   
Sbjct: 94  FEQIPQLSIGDTNRLTIDDCPFPHHQSILQLVSFLGTTQVKVLWLKNNANHEQSASLVRH 153

Query: 96  YFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVL 155
           +F GL  +  + +S N +++ +  D+F+  P L  L++R N I  L + +F  +PKL+VL
Sbjct: 154 HFAGLDQLDRLAIS-NAKLSDIGPDLFEHLPNLTWLDMRDN-IFRLPATIFDALPKLRVL 211

Query: 156 DLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPS 215
           +L  N +  +DP + ++L +LR+L L HN+L  L+RA F  VP L  LD+S N +  +P 
Sbjct: 212 ELSFNSLEELDPRLLRHLPNLRLLTLWHNKLRTLSRAAFAGVPELERLDLSSNQLESVPG 271

Query: 216 GVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLN 275
            +F+DL  L       N F+  P  LF   + L+ +K++  +  L+ LP  L   LP L+
Sbjct: 272 DLFADLPHLTELAMGVNNFRTLPDGLFRANRELRKVKLASQRVELETLPHDLLQMLPALD 331

Query: 276 TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY 335
            V L    +  LP  L + S N+T + L  + +L  LP  L RD K L  L+LQ N+L  
Sbjct: 332 QVSLERVGLVSLPGTLLFGSANLTQLNL-ANNRLHQLPEDLLRDQKALQVLQLQHNQLTG 390

Query: 336 LPENLFESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSL 393
           LP  L  +  EL+TL L +NQ+  ++  +L  L+ L  L L  NQL  I L AF   ++L
Sbjct: 391 LPAGLLRNTVELHTLRLSHNQIGELSAVALQALTKLQELYLDHNQLYTIELHAFKQTTAL 450

Query: 394 NTVDLSHNLLTF--------------------------DEY----QYGYSPLKQCVNLET 423
           +T+ L  N L F                          DE+    Q G +P +    L  
Sbjct: 451 HTLHLQVNQLAFETLNTLPATAPDTGDQEQLTDHIPAPDEFSLLAQDG-TPFQHLHQLRE 509

Query: 424 INLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVD 483
           ++LS N ++++  D + +   L+ L+L  NN + +       ++  +T+DL  N I  +D
Sbjct: 510 LDLSSNWLTAVPRDLLLNTHELQRLNLTRNNITSLTYANLQFLAPAITVDLRHNSIFEID 569

Query: 484 LRTLEIKAAAQDPN-EDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQML 542
           L  +E     +  N ++ T  AR    V+LNDNP+ CNC  Y   +++  ++   VY   
Sbjct: 570 LADMERLVLLEPRNFDEQTGRAR----VLLNDNPLHCNCIAYAFAQYIQNRLATAVYDRF 625

Query: 543 ELVTDNLECFGN---AGVGINSVRPENLTCD-------TKPCPARCYCNFSPYYSIMSVN 592
           ELV + L C G     G  I  V    L C+        + CPA C C   P  + + ++
Sbjct: 626 ELVANELTCHGPEHLEGALIKDVPTRELLCELDTPSTAIRHCPAPCRCYIRPEDTGVIID 685

Query: 593 CSSASLTHMPDY-LPVTYEDKKATSIQLILHNNSINHFLESPPES----YKLITDLDLSY 647
           CS  +LT +P+   P T+  +    I+L L NN+I+   +S   S    +  + +L  S 
Sbjct: 686 CSGQALTEVPELPRPTTFGYR---FIELHLENNNISALPDSTTASGSSGWAEVRELYASN 742

Query: 648 NNIS 651
           N+I+
Sbjct: 743 NSIA 746

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|22651844|gb|AAM97775.1| Toll-related protein [Aedes aegypti]

 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 186/588 (31%), Positives = 303/588 (51%), Gaps = 34/588 (5%)

Query: 39  YDRLPEQNLGPFNAVTFTFCPLPDENFISLFSK-LNITTINTLAFSNSPSNVGV-LSPPY 96
           +  LP  N+G    V    CPLP    I  F K L +  +    + N   + GV L   +
Sbjct: 116 FSDLPTLNVGNTTQVKIIHCPLPQRQSIKQFIKFLGVNHVKDFWYQNYGKDFGVRLIRQH 175

Query: 97  FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
           F+G+H ++ + LS    I  +  D+F   P L+ L LR N + +L   VF  +  L +L+
Sbjct: 176 FEGMHDLEKLFLSSG--IEDIQPDLFADLPNLKWLILRSNHV-KLLHNVFDNLTNLIILE 232

Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSG 216
           LG+  +  ++P +FKN   LR LNL  NQL N+++  F     L+ LD+S N I  L S 
Sbjct: 233 LGAYQITELEPGLFKNQRKLRHLNLWRNQLRNISKESFRGAETLQELDLSVNAIETLNSD 292

Query: 217 VFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNT 276
           VF+ L  L       NRF + P +L +E + L+  K   ++  L+ LP     NLP L +
Sbjct: 293 VFTLLPDLTVLNLGFNRFTVLPDNLLSENRKLREFKFINNQAPLQTLPEAFLGNLPQLKS 352

Query: 277 VILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYL 336
           VIL   S   LP+ LF  S+ IT++ L+ + +L S+P  L RD  +L  L L  N+L+ L
Sbjct: 353 VILNRCSFTHLPASLFRGSSEITHMDLS-YNQLGSVPELLLRDQLRLQDLNLAYNELESL 411

Query: 337 PENLFESLKELYTLNLKNNQLENITS--LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLN 394
           PE+L E+ +EL TL L  N+L N+++     L  L  L L+ N L  I+ + F    +L 
Sbjct: 412 PEHLLENTRELLTLRLSYNRLYNLSANIFASLDKLTELHLNDNFLHAIDRLTFSNTKALG 471

Query: 395 TVDLSHNLLTFDEYQY----------GYSPLKQCVNLETINLSYNRISSLFDDWISSMTS 444
            + + +N L+F ++ +            +P +   NL+ +NL  N I+++F DW  +   
Sbjct: 472 KLYMQNNHLSFHDFSFVLQEQDIADTDGTPFQYLENLQILNLRNNSITTIFRDWNYNNLH 531

Query: 445 LKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVA 504
           L+ELDL +NN S +       +S  + ++L+ N+I+ +DL+ +E    +Q   +DS +  
Sbjct: 532 LRELDLSYNNISTLSYLSLQFLSQDVRVNLTHNRISEIDLKDMEPIITSQRSQDDSKIY- 590

Query: 505 RSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNA---GVGINS 561
                V +NDNP+ CNC  +  ++++  ++   VY+ ++ V D+L C       GV ++ 
Sbjct: 591 -----VYVNDNPLNCNCVIFSFVQYLLNELDSAVYRRIQFVADDLRCSEPQNLEGVHVSK 645

Query: 562 VRPENLTC-------DTKPCPARCYCNFSPYYSIMSVNCSSASLTHMP 602
           ++ ++L C       + K CPA C C+  P    + VNC+   LT +P
Sbjct: 646 LQTKDLLCQLDQPGTEIKHCPANCSCHVRPLDRGVIVNCTRQGLTEIP 693

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859012|ref|XP_003704992.1| PREDICTED: protein toll-like [Megachile rotundata]

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 179/573 (31%), Positives = 305/573 (53%), Gaps = 29/573 (5%)

Query: 52  AVTFTFCPLPDEN----FISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHIL 107
           +V    C LP  +     +S+F   N+  +   ++ N  SN   L+  +      +K ++
Sbjct: 88  SVYIRMCNLPTNSSLGEIVSMFGTKNVDRLLFQSYGNMSSN---LNRQHLKDFPKLKWLI 144

Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
           LS N  +T L  D+F   P +  L+LR N++  LY G+F   P+LQVL+LG+N ++ ++P
Sbjct: 145 LSSNG-LTNLSSDLFADVPHITWLDLRENNV-RLYPGIFNNTPELQVLELGNNMMSQIEP 202

Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
            +F  LT L +LNL  N+   L   IF+ + +L SLD++ N ++ LP  +F+ L  L+T 
Sbjct: 203 NVFDPLTKLELLNLWLNKFTELKPGIFDKLVSLTSLDLNSNYLTTLPENIFAKLYNLKTL 262

Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
              SN F  FP+ LF     L+ I +S +K ++  LP   FANL  L  + L    +  L
Sbjct: 263 SLYSNNFTSFPEGLFRYNVKLKNINLSNNKVNMT-LPRRFFANLTQLEVLKLRRDGLMTL 321

Query: 288 PSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKEL 347
           P D+F N +++ N+ +  +  L SLP  +F    +L++L+L  N+L  LP+ +F    ++
Sbjct: 322 PEDIFRNCSSLKNLTVDSN-YLVSLPKRIFEGLHELLELDLSFNRLISLPDGIFLDATKM 380

Query: 348 YTLNLKNNQLENITS--LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTF 405
             LNL+ N+  +I+      L  L  L++  NQL+ I   +F  +++L     S+N LTF
Sbjct: 381 VYLNLQGNRFTSISRGLFSNLKSLTFLNMEGNQLQTIQDRSFSSMTNLRIAKFSNNQLTF 440

Query: 406 D---EYQYG-YSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQ 461
               E ++G  SP   C ++E ++LS+N I+ +F DWI +   L+ L+L +N   +I  +
Sbjct: 441 SSPFEDEFGKKSPFYDCTSIEELHLSHNNITEIFGDWIINALQLRLLNLSYNKIPYITTE 500

Query: 462 LDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNC 521
               +SN + +DL  N+I  V LR  E  A  Q+       V R+  I+ ++DNP+ C+C
Sbjct: 501 DLQFLSNNIEVDLRHNKIKHVSLRGAEAVAKYQE-------VPRNV-IIYVDDNPVMCDC 552

Query: 522 SNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNA---GVGINSVRPENLTCDT-KPCPAR 577
             YD +R+++  M   V     ++  NL C G A    + ++ ++ ++  C T KPCP+ 
Sbjct: 553 DLYDFLRYLNGDMHPFVQNYFHIIPGNLTCHGPAVQTCMVVDKLQSKSFVCPTLKPCPSG 612

Query: 578 CYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYE 610
           C C      + + V+CS  +LT +P ++   ++
Sbjct: 613 CSCWIRRNDNALLVDCSYKNLTQIPQHIQTIFD 645

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156545700|ref|XP_001604577.1| PREDICTED: protein toll [Nasonia vitripennis]

 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 195/636 (30%), Positives = 321/636 (50%), Gaps = 45/636 (7%)

Query: 43  PEQNLGPFNAVTFTFC-PLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLH 101
           P   LG   A+ F  C  L  E+   L + L I  + +L  +      G L+        
Sbjct: 84  PSLKLGDLQALVFRDCLTLGSEHSEKLANLLGIGQLTSLKIARFN---GTLARDDLRVYP 140

Query: 102 FVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSND 161
            VK + LS N ++  +  D+ +    LE L+L   +I  L +G F     L+ L+LG N 
Sbjct: 141 SVKKLYLSDN-QLGDVSVDLLRDLRSLELLDLHNTNI-RLPAGFFDNATTLRALELGINQ 198

Query: 162 VAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDL 221
           +  +   +F  L +L++LN+  N    L   +F  +  L +LD++ N +  LP+ +F DL
Sbjct: 199 MRQLPAGLFDELRNLKLLNIWKNGFRKLEPDVFRGLKKLETLDLNQNQLQTLPAELFKDL 258

Query: 222 RKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGE 281
             L+    + N F   P+ LF     L  +K+  +K +L ELP+GLFANL  L +V++  
Sbjct: 259 ENLELVNLSLNNFTSLPRGLFRNNPKLVSVKLLSNKRNLTELPAGLFANLTNLKSVVMTR 318

Query: 282 SSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLF 341
           + +  LP DLFW +TN+ N+ +     L SLP  +F++  +L  L L  N L  LPE LF
Sbjct: 319 AGLLSLPEDLFWGATNLRNLSI-DRNYLASLPQKIFQNSTELYSLSLSFNVLDELPERLF 377

Query: 342 ESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLS 399
           E   +L  L+L NN+L +I   +L+GL  L +L++  N L  I+L AF  L +L     +
Sbjct: 378 EYATKLSKLDLSNNRLTSINDHTLIGLESLRTLNMENNCLSFIHLEAFSFLGNLRVARFA 437

Query: 400 HNLLTFDEYQY---GY-SPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
           +N L+     Y   G+ SP   C +LE + L++N ++ +  DW+ S   L+ELDL+HN F
Sbjct: 438 NNRLSLHTGLYDIFGHISPFHNCHSLEELYLAHNNVTEMHSDWLVSNVRLRELDLKHNAF 497

Query: 456 SFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDN 515
           +++  +    +S+ L +DL FN I+ + L +LE+ A+ Q    D T        V ++DN
Sbjct: 498 NYLETEDLQFISSSLRVDLRFNNISRLVLTSLELIASNQSAPRDVT--------VEIDDN 549

Query: 516 PIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNA---GVGINSVRPENLTCDTK 572
           PI C+C  Y+L+R+++  M   V   + L    L C       G  ++ ++ ++L C  +
Sbjct: 550 PIRCDCEVYELLRYLNGDMHPFVQNYVHLKPGKLSCRSPEYMRGSQLSELKAKSLKCLVE 609

Query: 573 --------PCP---ARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLIL 621
                   PC      C C   P    + ++C++ +L+  P+++    + + A  I+L L
Sbjct: 610 SEQPRPGDPCSPNGGACTCWQRPEDKALLLDCAARNLSRAPEWI----DARGAARIELDL 665

Query: 622 HNNSINHFLESP---PESYKLITDLDLSYNNISHVD 654
               +N  +E P    + Y+ +T L+LS N IS VD
Sbjct: 666 R---VNRLVEPPSMYKKGYEKVTSLNLSRNRISFVD 698

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712913|ref|XP_003394997.1| PREDICTED: protein toll-like [Bombus terrestris]

 Score =  257 bits (656), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 181/572 (31%), Positives = 284/572 (49%), Gaps = 27/572 (4%)

Query: 52  AVTFTFCPLPDE-NFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSH 110
           ++ F  C LP   +   +  +  + ++ TL F +       ++  +   L  ++H+ LS 
Sbjct: 96  SIYFRMCTLPTNLSLGEIARRFGVRSVKTLVFESFEQLGPAINRTHLQKLPDLQHLTLSS 155

Query: 111 NKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIF 170
           N  +T L  D+F   PQL  L+LR N + +L  G+F Y P L+VL+LG N +  ++P I 
Sbjct: 156 NG-LTNLSSDLFADIPQLVWLDLRENRV-QLSPGIFNYTPNLEVLELGMNMMGNIEPSIL 213

Query: 171 KNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYAN 230
             L  LR LNL  N+   +    F+ +  L SLD++GN ++ LP  +F+ L  L+     
Sbjct: 214 NPLRKLRFLNLWQNKFTEIKPGTFDKLETLNSLDLNGNELTTLPKDIFAKLENLEALNLF 273

Query: 231 SNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD 290
           SN F   P+ L      L+ + +  +K ++  LP+GLFANL  L TV L  + + E+P+D
Sbjct: 274 SNNFSSLPEGLLEHNVRLREVNLYANKRNMTTLPNGLFANLKELVTVELRSNGLKEVPAD 333

Query: 291 LFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTL 350
           LF  S ++ NI L     + SLP  LF   + L KL L  N+L  LP+ +F  LK L TL
Sbjct: 334 LFRGSFSLKNISLQ-RNFIESLPKDLFNGLEHLSKLLLNYNELTSLPDEIFLHLKHLVTL 392

Query: 351 NLKNNQLENITSLV--GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEY 408
           +L  N L +I+  +   L  L  L++S N+L+ I   +F  L+ L     SHN L F+  
Sbjct: 393 DLSKNHLTSISRSIFKSLKSLEYLNMSENKLKVIEDTSFYSLTKLRIAQFSHNYLKFNAS 452

Query: 409 QYGY-------SPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQ 461
              Y       S    C  L+ ++L+ N IS +F DW      L+ LDLR N  + I  +
Sbjct: 453 INTYPDDFGNKSVFHTCTALQELHLARNNISEIFSDWTIGSLKLRILDLRFNQITQISAE 512

Query: 462 LDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVI-LNDNPIACN 520
               +SN + +DL+ N+I  + L T E  A  Q             N++I + +NPI CN
Sbjct: 513 NLQFLSNDIKVDLTHNRIKYIYLSTAERLAKFQ---------TNPRNVIIYVENNPIVCN 563

Query: 521 CSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINSVRPENLTCDTK-PCPA 576
           C  YD +R++  +M   V     ++  +L+C      A + I ++R + L C    PCP+
Sbjct: 564 CDLYDFLRYMDGRMHPYVQNFFHIIPGHLKCQSPDWLANIEIVNLRSKKLKCQVADPCPS 623

Query: 577 RCYCNFSPYYSIMSVNCSSASLTHMPDYLPVT 608
            C C          ++CS  +LT +P    +T
Sbjct: 624 ECNCWLKRDSKAFLIDCSHKNLTRVPHLTNIT 655

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195450953|ref|XP_002072704.1| GK13544 [Drosophila willistoni] gi|194168789|gb|EDW83690.1| GK13544 [Drosophila willistoni]

 Score =  256 bits (654), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 216/681 (31%), Positives = 352/681 (51%), Gaps = 58/681 (8%)

Query: 9   LRLTK-RSNSLEIDCSHFVGVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFIS 67
            +LTK R+++++I+C           SN S Y +LPE  +G  ++V    CPLP    IS
Sbjct: 65  FKLTKQRTSNVQIECFF---------SNHSEYKQLPELRIGNIDSVQIQRCPLPGHTPIS 115

Query: 68  -LFSKLNITTINTLAFSNSPSNVGV-LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGT 125
            + + L I T   L F ++  N+GV L+  + D L  +K + ++ ++  T +  D+    
Sbjct: 116 GILNHLGIPTPKMLIFESN--NLGVNLTRKHLDHLQNLKRLRIT-SRLSTHIPFDLLSDL 172

Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
             L  L+LR N + EL + +F  +  L+ L+LG+N +  +   IF++L  L+ LNL  N 
Sbjct: 173 RNLNWLDLRVN-VVELPAQLFANLESLEFLELGNNGIRQLPHGIFRSLHKLQHLNLWSNH 231

Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEM 245
           L NL++  F  V ++  +D+SGN I  LP  VF+ L  L     N NRF+  P++LF   
Sbjct: 232 LRNLSKHDFEGVSSVSDVDLSGNGIEQLPPDVFALLTNLSEINLNGNRFRSLPENLFEHN 291

Query: 246 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG 305
           ++L+ +++  ++ +L  LP  LFANLP L  VIL    +  + +DLF NS  ITNI L  
Sbjct: 292 RHLKNVRLLNNRVALPTLPPRLFANLPEL-KVILVRCDLETVSADLFENSVEITNITLRD 350

Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV- 364
           +  L++LP+ L +    L+ L+L++NKL +LP+ +F + K L  LNL +N L  I++ + 
Sbjct: 351 NN-LSTLPAKLLQHQINLLSLDLRQNKLTHLPDTIFANTKNLVDLNLADNLLTEISADIF 409

Query: 365 -GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFD------EYQYGY-SPLK 416
             L+ L +L LS N L  IN  AFD  + L  ++L HN +         E+Q G  SP  
Sbjct: 410 GQLTNLETLSLSRNHLRTINNRAFDATTQLRELNLEHNHIDLQQPLLDREFQTGIGSPFS 469

Query: 417 QCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP-DQLDSIVSNKLTLDLS 475
              +L+T+NL  N I  ++ DW  S+  L++LDL +NN S +  + L  +  + + ++++
Sbjct: 470 HLQHLQTLNLRNNSIMFIYGDWKYSLVKLRKLDLSYNNLSSLDYEDLQFLSQHDVFINMT 529

Query: 476 FNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMT 535
            N+I  ++               D+T  ++S   V LN NP+ C+C     I+ V  ++ 
Sbjct: 530 HNKIRSINFYEFL----------DAT-PSKSFVRVDLNRNPLVCDCVAQRFIQLVRGEID 578

Query: 536 KTVYQMLELVTDNLECFGNAGVGINSVR---PENLTCD--------TKPCPARCYCNFSP 584
            +  + LEL+TD L C   + +    VR   P  L C          + CP  C C    
Sbjct: 579 PSYAKKLELLTDQLSCSEPSALVDRPVRFVDPRELYCSFDKSEDPSERVCPRGCDCLVRT 638

Query: 585 YYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLD 644
               + VNCS+ +LT +P  LP+   +     ++L + NN++     +    Y+ +T L 
Sbjct: 639 IDHSLIVNCSNGNLTKVPK-LPILPSNLHL--MELHMENNTLLRLPSATSPGYENVTSLH 695

Query: 645 LSYNNISHVDTMYPYLNHLEL 665
           LS NNI+ +      L HL L
Sbjct: 696 LSGNNITQLS-----LGHLPL 711

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479829|ref|XP_001604871.2| PREDICTED: protein toll [Nasonia vitripennis]

 Score =  255 bits (652), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 204/641 (31%), Positives = 327/641 (51%), Gaps = 35/641 (5%)

Query: 46  NLGPFNAVTFTFCPLPDENFISLF--SKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFV 103
           ++G      FT C  P   + S     +L    +  L + N    +  LS    D    V
Sbjct: 84  DIGSVREFVFTDCEPPGPAYSSRIVNEQLRAQNVKYLKYENL---IAPLSAQDLDVFPDV 140

Query: 104 KHILLSHN--KEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSND 161
           +H+ L++N   E+ G+ +D+ +G P L  L LR  +I ++  G F     L+ L+L  N+
Sbjct: 141 RHLELTNNPLGEL-GVPRDLLRGLPVLNILELRNTNIQKIPQGFFNNSRFLRTLELSGNN 199

Query: 162 VAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDL 221
              + P +F  L  L +LN+  N L +L   +F  + +L  LDI  N++  LP  +F+DL
Sbjct: 200 FKSLTPGVFDGLEKLELLNIQENDLRDLKPDLFRGLKSLELLDIHQNSLKTLPVDIFADL 259

Query: 222 RKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGE 281
             L++   + N F   P DLF     L+V+K+ Y+K +L  LPS  F+NL  L  V L  
Sbjct: 260 ENLESINLSVNNFTSLPADLFLYNPKLKVVKLLYNKCNLTTLPSRFFSNLTNLKDVTLMR 319

Query: 282 SSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLF 341
           + I  LP DLFW STNI  + L     L +LP  LF+D  +L  L L  N L+YL   +F
Sbjct: 320 NGIHYLPEDLFWYSTNIVKLNL-NRNYLQTLPFNLFKDITELETLTLFFNDLQYLDAGIF 378

Query: 342 ESLKELYTLNLKNNQLENITSL--VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLS 399
            S K+L  L+L  N+L  I  L   GL  L  L L +N+L  I+  AF  LS L     +
Sbjct: 379 FSNKKLRKLDLSKNRLRFIDELTFAGLESLQELLLEYNELSYIDAKAFAPLSQLRFARFA 438

Query: 400 HNLLTFDEY---QYG-YSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
           +N LT D      +G +SP   C +LE +NL++N I+ ++ DW  + T+L+ LDL +N+F
Sbjct: 439 NNKLTLDNCLADSFGQFSPFHSCSSLEELNLAHNNITKMYSDWTITGTNLRILDLSYNSF 498

Query: 456 SFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDN 515
             +  +    +SN + +DL +N I  V+L  LE  +A +  N       R A+I  L+ N
Sbjct: 499 ESLQAEDLQFMSNNIEVDLRYNNIHHVNLANLEYISANESGN------PRQASI-FLSSN 551

Query: 516 PIACNCSNYDLIRFVSKKM---TKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTK 572
           PI C+C  YDL+R++ ++M   + T + + ++V D  +    AG+ ++ ++  ++ C T+
Sbjct: 552 PIHCDCKIYDLVRYLDQQMDFPSGTKFYVEDMVCDGPKHM--AGLLVSRLKSHSIKCLTE 609

Query: 573 PCP--ARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFL 630
            C   + C C   P  S + ++C+  +LT+ P ++    +   A  ++L L  N ++   
Sbjct: 610 TCASDSTCDCWMRPSDSTLLLDCAGRNLTNPPSWI----DTHGAERVELDLSRNKLSTGP 665

Query: 631 ESPPESYKLITDLDLSYNNISHVDT--MYPYLNHLELIDSE 669
               + Y  +  L+LS N I  VD   + P L  L L D++
Sbjct: 666 NMTAKGYNKVVRLNLSENKIIAVDESLIAPKLKILNLHDNK 706

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	693
FB|FBgn0262473	1097	Tl "Toll" [Drosophila melanoga	0.877	0.554	0.311	3.3e-65
UNIPROTKB|Q8TF66	581	LRRC15 "Leucine-rich repeat-co	0.513	0.612	0.272	4.3e-33
FB|FBgn0029114	1346	Tollo "Tollo" [Drosophila mela	0.857	0.441	0.249	3.6e-32
RGD|70551	578	Lrrc15 "leucine rich repeat co	0.493	0.591	0.290	4.8e-32
MGI|MGI:1921738	579	Lrrc15 "leucine rich repeat co	0.464	0.556	0.289	1.1e-31
UNIPROTKB|F1NI07	604	IGFALS "Uncharacterized protei	0.532	0.610	0.269	1.5e-31
UNIPROTKB|P40197	560	GP5 "Platelet glycoprotein V"	0.516	0.639	0.292	3.2e-31
UNIPROTKB|Q1KS52	606	ALS "Acid-labile subunit" [Sus	0.650	0.744	0.285	1.6e-30
FB|FBgn0261269	1092	conv "convoluted" [Drosophila	0.774	0.491	0.261	5.2e-30
UNIPROTKB|P22792	545	CPN2 "Carboxypeptidase N subun	0.404	0.513	0.320	1.5e-29

FB|FBgn0262473 Tl "Toll" [Drosophila melanogaster (taxid:7227)]

 Score = 671 (241.3 bits), Expect = 3.3e-65, P = 3.3e-65
 Identities = 204/654 (31%), Positives = 325/654 (49%)

Query:    39 YDRLPEQ-NLGPFNAVTFTFCPLPDENFI-SLFSKLNITTINTLAFSNSPSNVGV-LSPP 95
             Y +LP++  +G  + V    C LP    I S+   L I +  TL F +   N+G+ ++  
Sbjct:    87 YQQLPKKLRIGEVDRVQMRRCMLPGHTPIASILDYLGIVSPTTLIFESD--NLGMNITRQ 144

Query:    96 YFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVL 155
             + D LH +K    +  + +T +  ++      L  L LR N I E+ S +F  +  L+ +
Sbjct:   145 HLDRLHGLKRFRFT-TRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESI 202

Query:   156 DLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPS 215
             + GSN +  M   IF  +  L+ LNL  NQL NLT+  F    ++  +DI  N I  LP 
Sbjct:   203 EFGSNKLRQMPRGIFGKMPKLKQLNLWSNQLHNLTKHDFEGATSVLGIDIHDNGIEQLPH 262

Query:   216 GVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLN 275
              VF+ L  +     ++N F+  P+ LF   K+L  +++  ++  L  LPS LFAN P L 
Sbjct:   263 DVFAHLTNVTDINLSANLFRSLPQGLFDHNKHLNEVRLMNNRVPLATLPSRLFANQPELQ 322

Query:   276 TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY 335
              + L  + +  LP DLF +ST ITNI L G   L +LP+TL      L+ L+L  N+L +
Sbjct:   323 ILRL-RAELQSLPGDLFEHSTQITNISL-GDNLLKTLPATLLEHQVNLLSLDLSNNRLTH 380

Query:   336 LPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQINLIAF---DGL 390
             LP++LF     L  L L++N L  I+  +   L  L +L +S N+L  I+  AF   +GL
Sbjct:   381 LPDSLFAHTTNLTDLRLEDNLLTGISGDIFSNLGNLVTLVMSRNRLRTIDSRAFVSTNGL 440

Query:   391 SSL----NTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLK 446
               L    N +DL   LL         SP      L T+NL  N I  +++DW ++M  L+
Sbjct:   441 RHLHLDHNDIDLQQPLLDIMLQTQINSPFGYMHGLLTLNLRNNSIIFVYNDWKNTMLQLR 500

Query:   447 ELDLRHNNFSFIP-DQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVAR 505
             ELDL +NN S +  + L  +  N+L ++++ N+I  + L   E     +  N +   V  
Sbjct:   501 ELDLSYNNISSLGYEDLAFLSQNRLHVNMTHNKIRRIALP--EDVHLGEGYNNNLVHVD- 557

Query:   506 SANIVILNDNPIACNCSNYDLIRFVSKKMTKTVY-QMLELVTDNLECFG-NA--GVGINS 561
                   LNDNP+ C+C+    I+ V + + K  Y +  +L TD L C   N   G  +  
Sbjct:   558 ------LNDNPLVCDCTILWFIQLV-RGVHKPQYSRQFKLRTDRLVCSQPNVLEGTPVRQ 610

Query:   562 VRPENLTCDT--------KPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKK 613
             + P+ L C          + CP  C C+   Y   + +NC S +LTH+P  LP  +++ +
Sbjct:   611 IEPQTLICPLDFSDDPRERKCPRGCNCHVRTYDKALVINCHSGNLTHVPR-LPNLHKNMQ 669

Query:   614 ATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNISHVDT-MYPY-LNHLEL 665
                ++L L NN++     +    Y+ +T L L+ NN++ +D    P  L HL++
Sbjct:   670 L--MELHLENNTLLRLPSANTPGYESVTSLHLAGNNLTSIDVDQLPTNLTHLDI 721

GO:0019730 "antimicrobial humoral response" evidence=IGI

GO:0019732 "antifungal humoral response" evidence=IMP

GO:0006963 "positive regulation of antibacterial peptide biosynthetic process" evidence=IMP

GO:0006967 "positive regulation of antifungal peptide biosynthetic process" evidence=IMP

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA;NAS

GO:0008063 "Toll signaling pathway" evidence=IEA;NAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0006952 "defense response" evidence=NAS;TAS

GO:0009950 "dorsal/ventral axis specification" evidence=IMP;NAS;TAS

GO:0030097 "hemopoiesis" evidence=TAS

GO:0007416 "synapse assembly" evidence=IMP

GO:0006955 "immune response" evidence=TAS

GO:0009620 "response to fungus" evidence=TAS

GO:0016021 "integral to membrane" evidence=NAS

GO:0009880 "embryonic pattern specification" evidence=TAS

GO:0070976 "TIR domain binding" evidence=IPI

GO:0009617 "response to bacterium" evidence=NAS

GO:0050832 "defense response to fungus" evidence=TAS

GO:0045087 "innate immune response" evidence=IDA;NAS;TAS

GO:0019955 "cytokine binding" evidence=TAS

GO:0050830 "defense response to Gram-positive bacterium" evidence=IEA;TAS

GO:0035007 "regulation of melanization defense response" evidence=TAS

GO:0035172 "hemocyte proliferation" evidence=IMP;TAS

GO:0000910 "cytokinesis" evidence=IMP

GO:0007352 "zygotic specification of dorsal/ventral axis" evidence=IEA;NAS

GO:0045610 "regulation of hemocyte differentiation" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0043234 "protein complex" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0033565 "ESCRT-0 complex" evidence=IDA

GO:0016201 "synaptic target inhibition" evidence=IMP

GO:0009897 "external side of plasma membrane" evidence=IDA

UNIPROTKB|Q8TF66 LRRC15 "Leucine-rich repeat-containing protein 15" [Homo sapiens (taxid:9606)]

 Score = 384 (140.2 bits), Expect = 4.3e-33, P = 4.3e-33
 Identities = 99/363 (27%), Positives = 184/363 (50%)

Query:    42 LPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSN-VGVLSPPYFDGL 100
             + E N  PF  ++       ++N +S  +      + +L + +  +N + VL    F GL
Sbjct:    65 ITELNESPFLNISALIALRIEKNELSRITPGAFRNLGSLRYLSLANNKLQVLPIGLFQGL 124

Query:   101 HFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSN 160
               ++ +LLS N ++  +    F     L+ L L GN +  +  G F ++  L  L+LG N
Sbjct:   125 DSLESLLLSSN-QLLQIQPAHFSQCSNLKELQLHGNHLEYIPDGAFDHLVGLTKLNLGKN 183

Query:   161 DVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSD 220
              + ++ P +F++L +L++L L  N+L ++    F+ + NL+ L +  N I +L  G+F +
Sbjct:   184 SLTHISPRVFQHLGNLQVLRLYENRLTDIPMGTFDGLVNLQELALQQNQIGLLSPGLFHN 243

Query:   221 LRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILG 280
                LQ  Y ++N     P  +F ++  L   +++   +SLKEL  G+F  +P L  + L 
Sbjct:   244 NHNLQRLYLSNNHISQLPPSVFMQLPQLN--RLTLFGNSLKELSPGIFGPMPNLRELWLY 301

Query:   281 ESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENL 340
             ++ I+ LP ++F N   +  ++L+   +++ +    F    +L +L L  N L+ L  N+
Sbjct:   302 DNHISSLPDNVFSNLRQLQVLILS-RNQISFISPGAFNGLTELRELSLHTNALQDLDGNV 360

Query:   341 FESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDL 398
             F  L  L  ++L+NN+L  +   +   ++GL ++ L  NQLE + L  FD L  L  + L
Sbjct:   361 FRMLANLQNISLQNNRLRQLPGNIFANVNGLMAIQLQNNQLENLPLGIFDHLGKLCELRL 420

Query:   399 SHN 401
               N
Sbjct:   421 YDN 423

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0029114 Tollo "Tollo" [Drosophila melanogaster (taxid:7227)]

 Score = 386 (140.9 bits), Expect = 3.6e-32, P = 3.6e-32
 Identities = 171/685 (24%), Positives = 302/685 (44%)

Query:    60 LPDENFISLFSKLNITTINTLAFSNSPSN-VGVLSPPYFDGLHFVKHILLSHNKEITGLH 118
             L     +SL + + ++ +  L   N   N +  L+   F+GL  ++ + LS N+ +T L 
Sbjct:   217 LSANKMVSLPTAM-LSALGRLTHLNMAKNSMSFLADRAFEGLLSLRVVDLSANR-LTSLP 274

Query:   119 KDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDV--AYMDPEIFKNLTSL 176
              ++F  T QL+ + LR NSI  L  G+F  + +L VLDL SN++   +++   F  L  L
Sbjct:   275 PELFAETKQLQEIYLRNNSINVLAPGIFGELAELLVLDLASNELNSQWINAATFVGLKRL 334

Query:   177 RILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM 236
              +L+L  N++  L   IF  + +L+ L +  N I  LP G+F+DL  L T   + NR  +
Sbjct:   335 MMLDLSANKISRLEAHIFRPLASLQILKLEDNYIDQLPGGIFADLTNLHTLILSRNRISV 394

Query:   237 FPKDLFAEMKYLQVIKISYHKDS----------------------LKELPSGLFANLPLL 274
               +     +K L V+ + +++ S                      L+ +P  L A++ LL
Sbjct:   395 IEQRTLQGLKNLLVLSLDFNRISRMDQRSLVNCSQLQDLHLNDNKLQAVPEAL-AHVQLL 453

Query:   275 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 334
              T+ +GE+ I+++ +       ++  + +T    LT +   +F     L  L L +NKLK
Sbjct:   454 KTLDVGENMISQIENTSITQLESLYGLRMT-ENSLTHIRRGVFDRMSSLQILNLSQNKLK 512

Query:   335 YLPENLFESLKELYTLNLKNNQLENITSL-VGLSGLNSLDLSWNQLEQINLIAFDGLSSL 393
              +     +   +L  + L  NQL++I  L   L  L  L++S N+LE+ +         L
Sbjct:   513 SIEAGSLQRNSQLQAIRLDGNQLKSIAGLFTELPNLVWLNISGNRLEKFDYSHIP--IGL 570

Query:   394 NTVDLSHNLLTFDEYQYG-YSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRH 452
               +D+  N +T    Q G Y  ++  ++L T + SYN ++ +    I +  S++ L L  
Sbjct:   571 QWLDVRANRIT----QLGNYFEIESELSLSTFDASYNLLTEITASSIPN--SVEVLYLND 624

Query:   453 NNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVIL 512
             N  S I         N   +DL  N++  ++   L +   A+D         R      +
Sbjct:   625 NQISKIQPYTFFKKPNLTRVDLVRNRLTTLEPNALRLSPIAED---------REIPEFYI 675

Query:   513 NDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECF-----GNAGVGINSVRPENL 567
               N   C+C N D ++ V+++ ++T  Q+++L  D + C      G++ V +   + ++ 
Sbjct:   676 GHNAYECDC-NLDWLQKVNRE-SRTQPQLMDL--DQIHCRLAYARGSSHVSLIEAKSDDF 731

Query:   568 ------------------TCDTK-PCPARCYCNFSPYYSIMSVNCSSASLTH-MPDYLPV 607
                                CD K  CP RC C     ++   V+CS AS    +P ++P+
Sbjct:   732 LCKYASHCFALCHCCDFQACDCKMECPDRCSCYHDQSWTSNVVDCSRASYEQTLPSHIPM 791

Query:   608 TYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNIS--HVDTMYPYLNHLEL 665
                     S QL L  N+            K +  L L+++ I   H  T Y  L  LE+
Sbjct:   792 D-------STQLYLDGNNFRELQSHAFIGRKRLKVLHLNHSRIEVLHNRTFYGLLE-LEV 843

Query:   666 IDSEKIICHGSTKPLNGILLKNIQN 690
             +  +        K LNG   + + N
Sbjct:   844 LQLQS----NQLKALNGNEFQGLDN 864

GO:0005886 "plasma membrane" evidence=ISS

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0006952 "defense response" evidence=NAS

GO:0016021 "integral to membrane" evidence=ISS

GO:0007352 "zygotic specification of dorsal/ventral axis" evidence=IEA

GO:0006963 "positive regulation of antibacterial peptide biosynthetic process" evidence=IEA

GO:0050830 "defense response to Gram-positive bacterium" evidence=IEA

GO:0008063 "Toll signaling pathway" evidence=IEA

GO:0009620 "response to fungus" evidence=IEA

GO:0060049 "regulation of protein glycosylation" evidence=IMP

GO:0048935 "peripheral nervous system neuron development" evidence=IMP

GO:0002227 "innate immune response in mucosa" evidence=IMP

RGD|70551 Lrrc15 "leucine rich repeat containing 15" [Rattus norvegicus (taxid:10116)]

 Score = 375 (137.1 bits), Expect = 4.8e-32, P = 4.8e-32
 Identities = 102/351 (29%), Positives = 172/351 (49%)

Query:   111 NKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIF 170
             N  IT L +++F     L +L +  N ++ +  G F+ +  L+ L L +N +  +   +F
Sbjct:    62 NTHITELPENLFLNISALIALKMEKNELSTIMPGAFRNLGSLRYLSLANNKLRMLPIRVF 121

Query:   171 KNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYAN 230
             +++ +L  L L +NQL+ +  A F+   NLR L + GNN+  +P   F  L  L      
Sbjct:   122 QDVNNLESLLLSNNQLVQIQPAQFSQFSNLRELQLHGNNLESIPEEAFDHLVGLTKLNLG 181

Query:   231 SNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD 290
              N F      LF  +  LQV+++  H++ L ++P G F  L  L  + L E+ I  L   
Sbjct:   182 RNSFTHLSPRLFQHLGNLQVLRL--HENRLSDIPMGTFDALGNLQELALQENQIGTLSPG 239

Query:   291 LFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTL 350
             LF N+ N+  + L+ +  ++ LP  +F    +L KL L  N L+ L   +F  +  L  L
Sbjct:   240 LFHNNRNLQRLYLSNNH-ISQLPPGIFMQLPQLNKLTLFGNSLRELSPGVFGPMPNLREL 298

Query:   351 NLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEY 408
              L NN + ++   +   L+ L  L LS NQL  I+  AF+GL++L  + L  N L     
Sbjct:   299 WLYNNHITSLADNTFSHLNQLQVLILSHNQLTYISPGAFNGLTNLRELSLHTNALQ---- 354

Query:   409 QYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP 459
                 +  +   NL+ I+L  NR+  L     +++  L  + L++NN   +P
Sbjct:   355 DLDSNVFRSLANLQNISLQSNRLRQLPGSIFANVNGLTTIQLQNNNLENLP 405

GO:0005622 "intracellular" evidence=IDA

GO:0007154 "cell communication" evidence=TAS

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1921738 Lrrc15 "leucine rich repeat containing 15" [Mus musculus (taxid:10090)]

 Score = 372 (136.0 bits), Expect = 1.1e-31, P = 1.1e-31
 Identities = 96/332 (28%), Positives = 174/332 (52%)

Query:    73 NITTINTLAFSNSP-SNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESL 131
             N+ ++  L+ +N+   N+ V     F  ++ ++ +LLS+N ++  +    F     L+ L
Sbjct:    99 NLGSLRHLSLANNKLKNLPVR---LFQDVNNLETLLLSNN-QLVQIQPAQFSQFSNLKEL 154

Query:   132 NLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTR 191
              L GN++  +  GVF ++  L  L+LG+N   ++ P +F++L +L++L L  N+L ++  
Sbjct:   155 QLYGNNLEYIPEGVFDHLVGLTKLNLGNNGFTHLSPRVFQHLGNLQVLRLYENRLSDIPM 214

Query:   192 AIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVI 251
               F+ + NL+ L +  N I  L  G+F + R LQ  Y ++N     P  +F ++ +L   
Sbjct:   215 GTFDALGNLQELALQENQIGTLSPGLFHNNRNLQRLYLSNNHISHLPPGIFMQLPHLN-- 272

Query:   252 KISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTS 311
             K++   +SLKEL  G+F  +P L  + L  + I  LP + F +  N   +++  H +L+ 
Sbjct:   273 KLTLFGNSLKELSPGVFGPMPNLRELWLYNNHITSLPDNAF-SHLNQLQVLILSHNQLSY 331

Query:   312 LPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGL 369
             +    F     L +L L  N L+ L  N+F SL  L  ++L+NN+L  +   +   ++GL
Sbjct:   332 ISPGAFNGLTNLRELSLHTNALQDLDGNVFRSLANLRNVSLQNNRLRQLPGSIFANVNGL 391

Query:   370 NSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
              ++ L  N LE + L  FD L +L  + L  N
Sbjct:   392 MTIQLQNNNLENLPLGIFDHLGNLCELRLYDN 423

GO:0005622 "intracellular" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NI07 IGFALS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 372 (136.0 bits), Expect = 1.5e-31, P = 1.5e-31
 Identities = 102/378 (26%), Positives = 188/378 (49%)

Query:   111 NKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIF 170
             + ++  + +  F G   L  L+L  N +  L    F +   L  L L +N  + ++  +F
Sbjct:   102 SSQLAAVEQHAFHGLRSLYHLHLERNRLKYLAPHTFLHTQNLVSLSLNNNLFSKVEEGLF 161

Query:   171 KNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYAN 230
               L++L  LNL  N L+ L   +F+++PNLR L ++GN +  L   +F  L +L+    +
Sbjct:   162 AGLSNLWYLNLGWNSLVVLPDKVFHDLPNLRELILAGNKLPYLQHQLFCSLTELKELDLS 221

Query:   231 SNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD 290
              N  +    ++F +++ LQ  K+  + + +  +    F  +  L  + L  + +  L  D
Sbjct:   222 GNALKGIKINIFVKLQKLQ--KLYLNNNQINAIAPRAFMGMKSLRWLDLSHNRLTSLYED 279

Query:   291 LFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTL 350
              F    ++ +++      +TSL    F+D + L +L+L  N++  L E  F+ L +L  L
Sbjct:   280 TFLGLLSL-HVLRLSTNSITSLRPRTFKDLQFLEELQLGHNRIWSLAERTFDGLGQLEVL 338

Query:   351 NLKNNQLENITS--LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEY 408
             +L NNQL++I +   +GL  +  + LS N ++ +    F+G++ L+++ L H+ L+    
Sbjct:   339 SLNNNQLQDIKAGAFLGLYNVAVMHLSANCIKTLPEYVFEGVTKLHSLHLEHSCLS---- 394

Query:   409 QYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSN 468
             +   +      +L  + L +N IS++ D     +  L ELDL+HN  S +  QL   +SN
Sbjct:   395 KIRANTFSSLTSLRRLFLQHNAISTIEDQSFRELHELLELDLKHNRLSHLSPQLFVGLSN 454

Query:   469 KLTLDLSFNQIAIVDLRT 486
                L LSFNQI  +   T
Sbjct:   455 LEYLFLSFNQIMDISQNT 472

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|P40197 GP5 "Platelet glycoprotein V" [Homo sapiens (taxid:9606)]

 Score = 367 (134.2 bits), Expect = 3.2e-31, P = 3.2e-31
 Identities = 108/369 (29%), Positives = 182/369 (49%)

Query:    90 GVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYV 149
             GVL    F G+  ++ +++S +  I+ +    F    +L++L L  N IT L   +   +
Sbjct:    63 GVLQSQSFSGMTVLQRLMIS-DSHISAVAPGTFSDLIKLKTLRLSRNKITHLPGALLDKM 121

Query:   150 PKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN 209
               L+ L L  N +  +D  +F+ L +L+ L L+ NQL  L  ++F N+ NL+ LD+SGNN
Sbjct:   122 VLLEQLFLDHNALRGIDQNMFQKLVNLQELALNQNQLDFLPASLFTNLENLKLLDLSGNN 181

Query:   210 ISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFA 269
             ++ LP G+     KL+    +SNR       L   +  L   ++ +H++ ++ +  G F 
Sbjct:   182 LTHLPKGLLGAQAKLERLLLHSNRLVSLDSGLLNSLGALT--ELQFHRNHIRSIAPGAFD 239

Query:   270 NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQ 329
              LP L+++ L  + +A LPS LF +S N+T + L     L  LP  LF +   L +L L 
Sbjct:   240 RLPNLSSLTLSRNHLAFLPSALFLHSHNLTLLTLF-ENPLAELPGVLFGEMGGLQELWLN 298

Query:   330 RNKLKYLPENLFESLKELYTLNLK-NNQLENIT--SLVGLSGLNSLDLSWNQLEQINLIA 386
             R +L+ LP   F +L  L  L +  + +L  +   +  GL  L  L L  N L  +    
Sbjct:   299 RTQLRTLPAAAFRNLSRLRYLGVTLSPRLSALPQGAFQGLGELQVLALHSNGLTALPDGL 358

Query:   387 FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLK 446
               GL  L  V L  N L         +  +   +LE++ L +N++ +L  D   ++  L 
Sbjct:   359 LRGLGKLRQVSLRRNRLR----ALPRALFRNLSSLESVQLDHNQLETLPGDVFGALPRLT 414

Query:   447 ELDLRHNNF 455
             E+ L HN++
Sbjct:   415 EVLLGHNSW 423

GO:0005518 "collagen binding" evidence=IEA

GO:0007160 "cell-matrix adhesion" evidence=IEA

GO:0010544 "negative regulation of platelet activation" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007155 "cell adhesion" evidence=NAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0007597 "blood coagulation, intrinsic pathway" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

UNIPROTKB|Q1KS52 ALS "Acid-labile subunit" [Sus scrofa (taxid:9823)]

 Score = 363 (132.8 bits), Expect = 1.6e-30, P = 1.6e-30
 Identities = 135/473 (28%), Positives = 213/473 (45%)

Query:    60 LPDENFISLFSKLNITTINTLAFSN-SPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLH 118
             L   NF S+ +      +++L F N   S +  L P    GL  + H+ L  N ++  L 
Sbjct:    81 LDSNNFSSVPAGA-FRNLSSLGFLNLQGSGLASLEPQALLGLQNLYHLHLERN-QLRSLA 138

Query:   119 KDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI 178
                F  TP L SL L  N ++ +  G+FQ +  L  L+LG N +A +    F  L +LR 
Sbjct:   139 AHTFLHTPGLASLGLHNNLLSRVEEGLFQGLTNLWDLNLGWNSLAVLPDTAFHGLANLRE 198

Query:   179 LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP 238
             L L  N+L  L  A+F  +  LR LD+S N +  + + VF  L KLQ  Y + N      
Sbjct:   199 LVLAGNKLTYLQPALFCGLGELRELDLSRNALRSVKANVFVKLPKLQKLYLDHNLLAAVA 258

Query:   239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 298
                F  MK L+ + +S+++  +  L    F  L  L+ + L  +++A L    F +   +
Sbjct:   259 PGAFLGMKALRWLDLSHNR--VGGLLEDTFPGLLGLHVLRLAHNALASLRPRTFKDLHFL 316

Query:   299 TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 358
               + L GH +L  LP   F    +L  L L  N+++ +    F  L  +  +NL  N L 
Sbjct:   317 EELQL-GHNRLRQLPEKAFEGLGQLEVLALNDNQIQEIKAGAFLGLFNVAVMNLSGNCLR 375

Query:   359 NITSLV--GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN-LLTFDEYQ-YGYSP 414
             N+   V  GL  L+SL L  + L ++ L  F GLS L  + L  N L   DE   +G + 
Sbjct:   376 NLPEQVFRGLGKLHSLHLEHSCLGRVGLHTFAGLSGLRRLFLKDNGLEAIDEQSLWGLAE 435

Query:   415 LKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDL 474
             L     LE ++L+ NR++ L       +  L+ L L  N  S +P      +     LD+
Sbjct:   436 L-----LE-LDLTANRLTHLPGRLFQGLGKLEYLLLSRNRLSALPADALGPLQRTFWLDV 489

Query:   475 SFNQIAIVDLRTL----EIKAAAQDPNEDSTMVARSANI--VILNDNPIACNC 521
             S N++  +    L    +++  +   N   T V +   +  + L  NP  C C
Sbjct:   490 SHNRLQALPEAVLAPLGQLRYLSLRNNSLRTFVPQPLGLERLWLEGNPWDCGC 542

GO:0005634 "nucleus" evidence=IEA

FB|FBgn0261269 conv "convoluted" [Drosophila melanogaster (taxid:7227)]

 Score = 365 (133.5 bits), Expect = 5.2e-30, P = 5.2e-30
 Identities = 152/582 (26%), Positives = 257/582 (44%)

Query:    77 INTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGN 136
             +N      S + +   S   FD   F  +  LS+N  +T L +   +    L+ LN   N
Sbjct:   389 VNITVLDLSHNRLANFSRRSFDETTFATYFQLSYNN-LTNLAQIPIQNMTGLKVLNASYN 447

Query:   137 SITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNN 196
             SITE+    F  + +L  +D+  N+++ +   +F+ L SLR ++L HN +  +  + F  
Sbjct:   448 SITEIPKNCFPKLYELHTIDVSHNNISSIFNGVFQTLFSLRSIDLSHNSMREIKSSTFGT 507

Query:   197 VPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYH 256
             +P L  +D+S N +  +  G  + L  L+  Y N+N+ +     LF     L  +  S++
Sbjct:   508 LPTLLEMDLSHNELVSVVRGSLAKLTSLRQLYLNNNQLEK----LFQLPISLNELYFSHN 563

Query:   257 KDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL-----TS 311
             +  L  +PSG +   P++N++I  + S  +L   L  N  + T +++    KL     + 
Sbjct:   564 R--LTNIPSGTW---PVMNSLIYLDLSHNQLGDTL--NGESFTGLLVVQRLKLQNNGISQ 616

Query:   312 LPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGLSGL 369
              P         L  L L+ N +  L  + F  L  L+ LNL  NQ+++I+  +  GL  L
Sbjct:   617 PPKDAVAVMSTLQYLHLENNNITTLERSAFGKLPVLFELNLYGNQVKDISKRAFEGLLQL 676

Query:   370 NSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT-FDEYQYGYSPLKQCVNLETINLSY 428
              +L+LS N ++ +    F GL SL  +DLS N LT  D    G   L   ++LET++LS+
Sbjct:   677 LTLNLSSNGIQTLQNDIFVGLPSLRNLDLSFNSLTKLDNKTNGV--LDDLLSLETLDLSH 734

Query:   429 NRISSLFDDWISSMT----SLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDL 484
             NRIS +      S      +L+ L+L +N    +   +       + LD+S NQI   DL
Sbjct:   735 NRISFVTKKTFPSHQYIPYNLRNLNLSYNLMPILTYDITFGTKKLVRLDVSHNQIN--DL 792

Query:   485 RT------LEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTV 538
             R         +++     NE S + +   +I  L  N    + S+  +       + K  
Sbjct:   793 RRGVISNFTSLQSLDMSYNELSNLKSEE-HIFDLPQNLSWLDLSHNKIYHLPFANLVKVK 851

Query:   539 -YQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPY-YSIMSVNCSSA 596
               + ++L  ++LE    + VG      + L       P  C CN  P  Y ++    +  
Sbjct:   852 SLKYVDLTNNSLEDVPASIVGSMRNGSQVLLAGN---PLHCGCNARPLKYFMLQQTIAGE 908

Query:   597 SLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYK 638
              L  +    P   +DK     QLI  ++   H  E   E YK
Sbjct:   909 DLKSIYCGTPALIKDK-----QLISLDDEYLHCAEDEQEMYK 945

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0007424 "open tracheal system development" evidence=IMP

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0035159 "regulation of tube length, open tracheal system" evidence=IMP

UNIPROTKB|P22792 CPN2 "Carboxypeptidase N subunit 2" [Homo sapiens (taxid:9606)]

 Score = 352 (129.0 bits), Expect = 1.5e-29, P = 1.5e-29
 Identities = 91/284 (32%), Positives = 153/284 (53%)

Query:    92 LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
             LS   F  L  +  + L+ N  +  L + +F+    LESL+L+GN +  L   +FQ +  
Sbjct:   112 LSTNIFSNLTSLGKLTLNFNM-LEALPEGLFQHLAALESLHLQGNQLQALPRRLFQPLTH 170

Query:   152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS 211
             L+ L+L  N +A +  E+F  LTSL+ L L +N L  L + +F  + +L+ L +  NNIS
Sbjct:   171 LKTLNLAQNLLAQLPEELFHPLTSLQTLKLSNNALSGLPQGVFGKLGSLQELFLDSNNIS 230

Query:   212 ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANL 271
              LP  VFS L  L+  +   N     P  +FA +  L  + + ++   L+ LP+GLFA+ 
Sbjct:   231 ELPPQVFSQLFCLERLWLQRNAITHLPLSIFASLGNLTFLSLQWNM--LRVLPAGLFAHT 288

Query:   272 PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN 331
             P L  + L  + +  +    F + +N+ +++L+ +  +T LP+ +FRD ++LVKL L  N
Sbjct:   289 PCLVGLSLTHNQLETVAEGTFAHLSNLRSLMLS-YNAITHLPAGIFRDLEELVKLYLGSN 347

Query:   332 KLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLS 375
              L  L   LF++L +L  L+L  NQL  +   +  +  N  +L+
Sbjct:   348 NLTALHPALFQNLSKLELLSLSKNQLTTLPEGIFDTNYNLFNLA 391

GO:0050821 "protein stabilization" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0030234 "enzyme regulator activity" evidence=NAS

GO:0050790 "regulation of catalytic activity" evidence=NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	693
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-10
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-10
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-10
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-10
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	4e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	8e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	9e-05
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	8e-04
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	0.001
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.003
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 74.5 bits (183), Expect = 1e-13
 Identities = 122/495 (24%), Positives = 188/495 (37%), Gaps = 121/495 (24%)

Query: 90  GVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGN---------SITE 140
           G +S   F  L +++ I LS+N+    +  DIF  +  L  LNL  N         SI  
Sbjct: 83  GKISSAIF-RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN 141

Query: 141 LYS----------------GVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHN 184
           L +                G F     L+VLDLG N +    P    NLTSL  L L  N
Sbjct: 142 LETLDLSNNMLSGEIPNDIGSFS---SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198

Query: 185 QLI---------------------NLTRAIFNNVPNLRS---LDISGNNIS--ILPSGVF 218
           QL+                     NL+  I   +  L S   LD+  NN++  I  S   
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS--L 256

Query: 219 SDLRKLQTFYANSNRFQ-MFPKDLF-----------------------AEMKYLQVIKIS 254
            +L+ LQ  +   N+     P  +F                        +++ L+++ + 
Sbjct: 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL- 315

Query: 255 YHKDSLKELPSGLFANLPLLNTVILGESSIA-ELPSDL---------------------- 291
           +  +   ++P  L  +LP L  + L  +  + E+P +L                      
Sbjct: 316 FSNNFTGKIPVAL-TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374

Query: 292 -FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTL 350
              +S N+  ++L  +     +P +L   C+ L ++ LQ N       + F  L  +Y L
Sbjct: 375 GLCSSGNLFKLILFSNSLEGEIPKSL-GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433

Query: 351 NLKNNQLE-NITSLV-GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEY 408
           ++ NN L+  I S    +  L  L L+ N+     L    G   L  +DLS N  +    
Sbjct: 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFG-GLPDSFGSKRLENLDLSRNQFS---- 488

Query: 409 QYGYSPLK--QCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFS-FIPDQLDSI 465
             G  P K      L  + LS N++S    D +SS   L  LDL HN  S  IP     +
Sbjct: 489 --GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546

Query: 466 VSNKLTLDLSFNQIA 480
                 LDLS NQ++
Sbjct: 547 PVLSQ-LDLSQNQLS 560

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 69.9 bits (171), Expect = 3e-12
 Identities = 94/347 (27%), Positives = 149/347 (42%), Gaps = 43/347 (12%)

Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN-LTRAIFNNVPNLRSLDISGNNI 210
           L  LDL  N++    P    NL +L+ L L  N+L   +  +IF+ +  L SLD+S N++
Sbjct: 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSL 296

Query: 211 SILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGL--F 268
           S     +   L+ L+  +  SN F          +  LQV+++  +K S  E+P  L   
Sbjct: 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS-GEIPKNLGKH 355

Query: 269 ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL 328
            NL +L+  +   +   E+P  L  +S N+  ++L  +     +P +L   C+ L ++ L
Sbjct: 356 NNLTVLD--LSTNNLTGEIPEGL-CSSGNLFKLILFSNSLEGEIPKSL-GACRSLRRVRL 411

Query: 329 QRNKLKYLPENLFESLKELYTLNLKNNQLE-------------------------NITSL 363
           Q N       + F  L  +Y L++ NN L+                          +   
Sbjct: 412 QDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS 471

Query: 364 VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSP--LKQCVNL 421
            G   L +LDLS NQ           LS L  + LS N L+      G  P  L  C  L
Sbjct: 472 FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS------GEIPDELSSCKKL 525

Query: 422 ETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSF-IPDQLDSIVS 467
            +++LS+N++S       S M  L +LDL  N  S  IP  L ++ S
Sbjct: 526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.0 bits (161), Expect = 4e-11
 Identities = 95/367 (25%), Positives = 157/367 (42%), Gaps = 41/367 (11%)

Query: 94  PPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQ 153
           P     L  ++++ L  NK    +   IF    +L SL+L  NS++     +   +  L+
Sbjct: 253 PSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLE 311

Query: 154 VLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS-I 212
           +L L SN+     P    +L  L++L L  N+             NL  LD+S NN++  
Sbjct: 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371

Query: 213 LPSGVFS--DLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
           +P G+ S  +L KL  F +NS   ++ PK L A  + L+ +++  +  S  ELPS  F  
Sbjct: 372 IPEGLCSSGNLFKLILF-SNSLEGEI-PKSLGA-CRSLRRVRLQDNSFS-GELPSE-FTK 426

Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 330
           LPL+  + +  +++    +   W+  ++  + L  +K    LP   F   K+L  L+L R
Sbjct: 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD-SFGS-KRLENLDLSR 484

Query: 331 NKLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFD 388
           N+          SL EL  L L  N+L       L     L SLDLS NQL         
Sbjct: 485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS-------- 536

Query: 389 GLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKEL 448
                          +F E             L  ++LS N++S      + ++ SL ++
Sbjct: 537 ----------GQIPASFSEMPV----------LSQLDLSQNQLSGEIPKNLGNVESLVQV 576

Query: 449 DLRHNNF 455
           ++ HN+ 
Sbjct: 577 NISHNHL 583

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 64.1 bits (156), Expect = 2e-10
 Identities = 114/430 (26%), Positives = 174/430 (40%), Gaps = 93/430 (21%)

Query: 130 SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP-EIFKNLTSLRILNLDHNQLIN 188
           S++L G +I+   S     +P +Q ++L +N ++   P +IF   +SLR LNL +N   N
Sbjct: 73  SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN---N 129

Query: 189 LTRAIFN-NVPNLRSLDISGNNIS---ILPSGVFSDLR---------------------K 223
            T +I   ++PNL +LD+S N +S       G FS L+                      
Sbjct: 130 FTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS 189

Query: 224 LQTFYANSNRFQ-MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES 282
           L+     SN+     P++L  +MK L+ I + Y+  S  E+P  +   L  LN + L  +
Sbjct: 190 LEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLS-GEIPYEI-GGLTSLNHLDLVYN 246

Query: 283 SIA-ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLF 341
           ++   +PS L  N  N+  + L  +K    +P ++F   +KL+ L+L  N L      L 
Sbjct: 247 NLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELV 304

Query: 342 ESLKELYTLNLKNNQL-----ENITSLVGL----------SG-----------LNSLDLS 375
             L+ L  L+L +N         +TSL  L          SG           L  LDLS
Sbjct: 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364

Query: 376 WNQL------------EQINLIAFDG------------LSSLNTVDLSHNLLTFDEYQYG 411
            N L                LI F                SL  V L  N  +  E    
Sbjct: 365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS-GELPSE 423

Query: 412 YSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSF-IPDQLDSIVSNKL 470
           ++ L   V    +++S N +    +     M SL+ L L  N F   +PD   S      
Sbjct: 424 FTKL-PLVYF--LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS--KRLE 478

Query: 471 TLDLSFNQIA 480
            LDLS NQ +
Sbjct: 479 NLDLSRNQFS 488

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 20/60 (33%), Positives = 35/60 (58%)

Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234
           +L+ L+L +N+L  +    F  +PNL+ LD+SGNN++ +    FS L  L++   + N  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 55.6 bits (135), Expect = 4e-10
 Identities = 24/60 (40%), Positives = 40/60 (66%)

Query: 151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
            L+ LDL +N +  +    FK L +L++L+L  N L +++   F+ +P+LRSLD+SGNN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 55.2 bits (134), Expect = 5e-10
 Identities = 26/60 (43%), Positives = 37/60 (61%)

Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
            L+SL+L  N +T +  G F+ +P L+VLDL  N++  + PE F  L SLR L+L  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 56.2 bits (135), Expect = 4e-08
 Identities = 58/237 (24%), Positives = 113/237 (47%), Gaps = 31/237 (13%)

Query: 148 YVP-KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDIS 206
            +P ++  L L +N++  +   +  N+ +L     + NQL ++   + + +   + +++S
Sbjct: 196 CIPEQITTLILDNNELKSLPENLQGNIKTLYA---NSNQLTSIPATLPDTI---QEMELS 249

Query: 207 GNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSG 266
            N I+ LP  + S L+ L  F+   N+    P++L  E++YL V     + +S++ LP+ 
Sbjct: 250 INRITELPERLPSALQSLDLFH---NKISCLPENLPEELRYLSV-----YDNSIRTLPAH 301

Query: 267 LFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL 326
           L + +  LN      +S+  LP  L          +  G   LTSLP++L     +L  L
Sbjct: 302 LPSGITHLNVQ---SNSLTALPETLPPG----LKTLEAGENALTSLPASL---PPELQVL 351

Query: 327 ELQRNKLKYLPENLFESLKELY-TLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQI 382
           ++ +N++  LPE L  ++  L  + N   N  EN+      + L  +  S N L ++
Sbjct: 352 DVSKNQITVLPETLPPTITTLDVSRNALTNLPENLP-----AALQIMQASRNNLVRL 403

Length = 754

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.5 bits (114), Expect = 3e-07
 Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 347 LYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLL 403
           L +L+L NN+L  I   +  GL  L  LDLS N L  I+  AF GL SL ++DLS N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.8 bits (112), Expect = 5e-07
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSND 161
           +K + LS+N+ +T +    FKG P L+ L+L GN++T +    F  +P L+ LDL  N+
Sbjct: 2   LKSLDLSNNR-LTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.9 bits (124), Expect = 7e-07
 Identities = 65/209 (31%), Positives = 99/209 (47%), Gaps = 32/209 (15%)

Query: 171 KNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYAN 230
             LT+L  L+LD+N + ++   I     NL+ LD+S N I  LPS +  +L  L+    +
Sbjct: 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLS 171

Query: 231 SNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD 290
            N     PK                           L +NL  LN + L  + I++LP +
Sbjct: 172 FNDLSDLPK---------------------------LLSNLSNLNNLDLSGNKISDLPPE 204

Query: 291 LFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTL 350
           +     +    +   +  +  L S+L  + K L  LEL  NKL+ LPE++  +L  L TL
Sbjct: 205 I--ELLSALEELDLSNNSIIELLSSL-SNLKNLSGLELSNNKLEDLPESI-GNLSNLETL 260

Query: 351 NLKNNQLENITSLVGLSGLNSLDLSWNQL 379
           +L NNQ+ +I+SL  L+ L  LDLS N L
Sbjct: 261 DLSNNQISSISSLGSLTNLRELDLSGNSL 289

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQL 379
            L  L+L  N+L  +P+  F+ L  L  L+L  N L +I   +  GL  L SLDLS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 33/83 (39%), Positives = 38/83 (45%), Gaps = 10/83 (12%)

Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
            L+S+NL GNSI          +  L+VLDL  N      PE    LTSLRILNL+ N L
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

Query: 187 IN----------LTRAIFNNVPN 199
                       L RA FN   N
Sbjct: 503 SGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 7e-06
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 6/65 (9%)

Query: 392 SLNTVDLSHNLLTF-DEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDL 450
           +L ++DLS+N LT   +        K   NL+ ++LS N ++S+  +  S + SL+ LDL
Sbjct: 1   NLKSLDLSNNRLTVIPD-----GAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDL 55

Query: 451 RHNNF 455
             NN 
Sbjct: 56  SGNNL 60

Length = 60

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 49.0 bits (116), Expect = 8e-06
 Identities = 77/268 (28%), Positives = 119/268 (44%), Gaps = 58/268 (21%)

Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
           P+L +L + GN +T L        P L  L + SN + ++ P +   L  L I     NQ
Sbjct: 242 PELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHL-PALPSGLCKLWIFG---NQ 293

Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEM 245
           L +L        P L+ L +S N ++ LP+ + S+L KL  +          P  L    
Sbjct: 294 LTSLPVL----PPGLQELSVSDNQLASLPA-LPSELCKLWAYNNQLTSLPTLPSGL---- 344

Query: 246 KYLQVIKISYHK-DSLKELPSGLF---------ANLPLLNT-----VILGE--SSIAELP 288
              Q + +S ++  SL  LPS L+          +LP L +     ++ G   +S+  LP
Sbjct: 345 ---QELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLP 401

Query: 289 SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 348
           S+L         ++++G++ LTSLP         L+ L + RN+L  LPE+L   L    
Sbjct: 402 SEL-------KELMVSGNR-LTSLPML----PSGLLSLSVYRNQLTRLPESLIH-LSSET 448

Query: 349 TLNLKNN--------QLENITSLVGLSG 368
           T+NL+ N         L  ITS  G SG
Sbjct: 449 TVNLEGNPLSERTLQALREITSAPGYSG 476

Length = 788

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 9e-06
 Identities = 21/60 (35%), Positives = 36/60 (60%)

Query: 420 NLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
           NL++++LS NR++ + D     + +LK LDL  NN + I  +  S + +  +LDLS N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.7 bits (116), Expect = 1e-05
 Identities = 91/318 (28%), Positives = 140/318 (44%), Gaps = 48/318 (15%)

Query: 195 NNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ-MFPKDLFAEMKYLQVIKI 253
           NN   + S+D+SG NIS   S     L  +QT   ++N+     P D+F     L+ + +
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 254 SYHKDSLKELPSGLFANLPLLNTVILGESSIA-ELPSDL-FWNSTNITNI---VLTGH-- 306
           S +  +   +P G   ++P L T+ L  + ++ E+P+D+  ++S  + ++   VL G   
Sbjct: 126 SNNNFT-GSIPRG---SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP 181

Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKL-KYLPENL--FESLKELYTLNLKNNQLENITSL 363
             LT+L S  F        L L  N+L   +P  L   +SLK +Y L   N   E    +
Sbjct: 182 NSLTNLTSLEF--------LTLASNQLVGQIPRELGQMKSLKWIY-LGYNNLSGEIPYEI 232

Query: 364 VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT------------------F 405
            GL+ LN LDL +N L      +   L +L  + L  N L+                   
Sbjct: 233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292

Query: 406 DEYQYGYSP--LKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSF-IPDQL 462
           D    G  P  + Q  NLE ++L  N  +      ++S+  L+ L L  N FS  IP  L
Sbjct: 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352

Query: 463 DSIVSNKLT-LDLSFNQI 479
                N LT LDLS N +
Sbjct: 353 GK--HNNLTVLDLSTNNL 368

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 308 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 357
           +LT +P   F+    L  L+L  N L  +    F  L  L +L+L  N L
Sbjct: 11  RLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 45.5 bits (107), Expect = 9e-05
 Identities = 41/156 (26%), Positives = 80/156 (51%), Gaps = 22/156 (14%)

Query: 308 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLS 367
            LT++P+ +    +++  L L  N+LK LPENL  ++K LY     +NQL +I + +   
Sbjct: 189 GLTTIPACI---PEQITTLILDNNELKSLPENLQGNIKTLYA---NSNQLTSIPATLP-D 241

Query: 368 GLNSLDLSWNQLEQINLIAFDGL-SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL 426
            +  ++LS N++ ++     + L S+L ++DL HN ++         P      L  +++
Sbjct: 242 TIQEMELSINRITELP----ERLPSALQSLDLFHNKIS-------CLPENLPEELRYLSV 290

Query: 427 SYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQL 462
             N I +L     S +T    L+++ N+ + +P+ L
Sbjct: 291 YDNSIRTLPAHLPSGIT---HLNVQSNSLTALPETL 323

Length = 754

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 258 DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 317
            S+  +    F+    L ++ L  SS+  + S  F+N +++T+I +     LTS+    F
Sbjct: 20  SSVTSIGEYAFSGCTSLKSITLP-SSLTSIGSYAFYNCSSLTSITI--PSSLTSIGEYAF 76

Query: 318 RDCKKLVKLELQRNKLKYLPENLFE--SLKELY 348
            +C  L  + +  + L  +    F   SLK + 
Sbjct: 77  SNCSSLTSITIP-SNLTTIGSYAFSNCSLKSIT 108

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 50/194 (25%), Positives = 77/194 (39%), Gaps = 23/194 (11%)

Query: 317 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTL---NLKNNQLEN------ITSLVGLS 367
                 L +L+L  N L      + ESL    +L    L NN L +         L  L 
Sbjct: 77  LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLP 136

Query: 368 -GLNSLDLSWNQLEQINLI----AFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLE 422
             L  L L  N+LE  +      A      L  ++L++N +     +     LK   NLE
Sbjct: 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE 196

Query: 423 TINLSYNRI----SSLFDDWISSMTSLKELDLRHNNFSFIP-----DQLDSIVSNKLTLD 473
            ++L+ N +    +S   + ++S+ SL+ L+L  NN +          L S   + LTL 
Sbjct: 197 VLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLS 256

Query: 474 LSFNQIAIVDLRTL 487
           LS N I     + L
Sbjct: 257 LSCNDITDDGAKDL 270

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 48/165 (29%), Positives = 68/165 (41%), Gaps = 20/165 (12%)

Query: 318 RDCK-KLVKLELQRNKLKYLP----ENLFESLKELYTLNLKNNQL--ENITSLV----GL 366
           +D    L KL L RN+L+            + ++L  LNL NN +    I +L       
Sbjct: 133 KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN 192

Query: 367 SGLNSLDLSWNQLEQINLIAFDG----LSSLNTVDLSHNLLT-FDEYQYGYSPLKQCVNL 421
             L  LDL+ N L      A       L SL  ++L  N LT         + L   ++L
Sbjct: 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL 252

Query: 422 ETINLSYNRISSL----FDDWISSMTSLKELDLRHNNFSFIPDQL 462
            T++LS N I+        + ++   SL ELDLR N F     QL
Sbjct: 253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 16/57 (28%), Positives = 30/57 (52%)

Query: 199 NLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISY 255
           NL+SLD+S N ++++P G F  L  L+    + N       + F+ +  L+ + +S 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 368 GLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLS 427
            L SLDLS N+L  I   AF GL +L  +DLS N LT    +          +L +++LS
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEA----FSGLPSLRSLDLS 56

Query: 428 YNRI 431
            N +
Sbjct: 57  GNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 15/105 (14%)

Query: 121 IFKGTPQLESLNLRGNSITE----LYSGVFQYVPKLQVLDLGSN-----DVAYMDPEIFK 171
             K    LE L+L  N +T+      +     +  L+VL+LG N       A +   +  
Sbjct: 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLS 247

Query: 172 NLTSLRILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNIS 211
              SL  L+L  N +      +L   +     +L  LD+ GN   
Sbjct: 248 PNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 7e-04
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 87  SNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSI 138
           + + V+    F GL  +K + LS N  +T +  + F G P L SL+L GN++
Sbjct: 10  NRLTVIPDGAFKGLPNLKVLDLSGNN-LTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 42.4 bits (99), Expect = 8e-04
 Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 21/165 (12%)

Query: 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDV 162
           ++ + L HNK I+ L +++ +    L  L++  NSI  L + +   +  L V    SN +
Sbjct: 264 LQSLDLFHNK-ISCLPENLPEE---LRYLSVYDNSIRTLPAHLPSGITHLNVQ---SNSL 316

Query: 163 AYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLR 222
             + PE       L+ L    N L +L  ++    P L+ LD+S N I++LP  +     
Sbjct: 317 TAL-PETLP--PGLKTLEAGENALTSLPASL---PPELQVLDVSKNQITVLPETLPP--- 367

Query: 223 KLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGL 267
            + T   + N     P++L A ++ +Q       +++L  LP  L
Sbjct: 368 TITTLDVSRNALTNLPENLPAALQIMQA-----SRNNLVRLPESL 407

Length = 754

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 39.4 bits (93), Expect = 0.001
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 9/125 (7%)

Query: 199 NLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKD 258
           +L S+ I  ++++ +    FS    L++    S+         F     L  I I     
Sbjct: 12  SLTSITIP-SSVTSIGEYAFSGCTSLKSITLPSS-LTSIGSYAFYNCSSLTSITIP---S 66

Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
           SL  +    F+N   L ++ +  S++  + S  F N  ++ +I +     +T++    F 
Sbjct: 67  SLTSIGEYAFSNCSSLTSITI-PSNLTTIGSYAFSN-CSLKSITIP--SSVTTIGDYAFS 122

Query: 319 DCKKL 323
           +C  L
Sbjct: 123 NCSSL 127

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 194 FNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKI 253
           F+   +L+S+ +  ++++ + S  F +   L +    S+      +  F+    L  I I
Sbjct: 30  FSGCTSLKSITLP-SSLTSIGSYAFYNCSSLTSITIPSS-LTSIGEYAFSNCSSLTSITI 87

Query: 254 SYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNIT 299
                +L  + S  F+N  L +  I   SS+  +    F N +++ 
Sbjct: 88  PS---NLTTIGSYAFSNCSLKSITI--PSSVTTIGDYAFSNCSSLK 128

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 2/40 (5%)

Query: 420 NLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP 459
           NLET++LS N+I+ L    +S++ +L+ LDL  N  + + 
Sbjct: 2   NLETLDLSNNQITDL--PPLSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.5 bits (83), Expect = 0.003
 Identities = 15/42 (35%), Positives = 26/42 (61%)

Query: 345 KELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIA 386
             L TL+L NNQ+ ++  L  L  L +LDLS N++  ++ ++
Sbjct: 1   TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLS 42

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 40.1 bits (93), Expect = 0.004
 Identities = 61/212 (28%), Positives = 92/212 (43%), Gaps = 43/212 (20%)

Query: 198 PNLRSLDISGNNIS---ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKIS 254
           P LR+L++SGN ++   +LP G    L +L  F          P  L       ++    
Sbjct: 242 PELRTLEVSGNQLTSLPVLPPG----LLELSIFSNPLTHLPALPSGL------CKLWIFG 291

Query: 255 YHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDL--FWNSTNITNIVLTGHKKLTSL 312
               SL  LP GL   L + +  +   +S+  LPS+L   W   N          +LTSL
Sbjct: 292 NQLTSLPVLPPGL-QELSVSDNQL---ASLPALPSELCKLWAYNN----------QLTSL 337

Query: 313 PSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSL 372
           P+        L +L +  N+L  LP        ELY L   NN+L ++ +L   SGL  L
Sbjct: 338 PTL----PSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLPALP--SGLKEL 387

Query: 373 DLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT 404
            +S N+L  + ++     S L  + +S N LT
Sbjct: 388 IVSGNRLTSLPVLP----SELKELMVSGNRLT 415

Length = 788

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	693
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194|consensus	873		100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194|consensus	873		100.0
KOG4237|consensus	498		100.0
KOG0472|consensus	565		100.0
KOG0472|consensus	565		100.0
KOG0618|consensus	1081		99.97
KOG0618|consensus	1081		99.96
KOG0444|consensus	1255		99.96
KOG0444|consensus	1255		99.96
KOG4237|consensus	498		99.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.62
KOG0617|consensus	264		99.55
KOG0617|consensus	264		99.52
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.31
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.29
KOG1909|consensus	382		99.16
KOG1259|consensus	490		99.14
KOG1909|consensus	382		99.12
KOG3207|consensus	505		99.1
KOG3207|consensus	505		99.05
KOG1259|consensus	490		99.05
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.03
KOG0531|consensus	414		99.0
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.98
KOG0531|consensus	414		98.92
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
KOG0532|consensus	722		98.92
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.91
KOG0532|consensus	722		98.86
KOG4658|consensus	889		98.85
KOG4658|consensus	889		98.77
KOG1859|consensus	1096		98.73
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.71
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.67
PLN03150	623	hypothetical protein; Provisional	98.67
KOG1859|consensus	1096		98.58
PLN03150	623	hypothetical protein; Provisional	98.57
KOG2120|consensus	419		98.27
KOG1644|consensus	233		98.2
KOG2120|consensus	419		98.2
KOG4341|consensus	483		98.19
KOG4341|consensus	483		98.17
KOG1644|consensus	233		98.15
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.05
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	98.04
KOG2982|consensus	418		98.01
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.99
KOG4579|consensus	177		97.95
KOG2982|consensus	418		97.92
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.88
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.81
KOG4579|consensus	177		97.8
PRK15386	426	type III secretion protein GogB; Provisional	97.73
KOG3665|consensus	699		97.66
PRK15386	426	type III secretion protein GogB; Provisional	97.6
KOG3665|consensus	699		97.36
KOG2739|consensus	260		97.33
KOG2123|consensus	388		97.29
smart00082	51	LRRCT Leucine rich repeat C-terminal domain.	97.27
KOG2739|consensus	260		97.26
KOG2123|consensus	388		97.2
KOG1947|consensus	482		96.65
KOG1947|consensus	482		96.51
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.12
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.84
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.94
KOG4308|consensus	478		93.12
PF01462	28	LRRNT: Leucine rich repeat N-terminal domain; Inte	93.04
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.7
smart00370	26	LRR Leucine-rich repeats, outliers.	92.7
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.13
KOG3864|consensus	221		92.08
KOG3864|consensus	221		91.46
smart00370	26	LRR Leucine-rich repeats, outliers.	91.31
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.31
KOG4308|consensus	478		91.23
smart00013	33	LRRNT Leucine rich repeat N-terminal domain.	90.78
KOG0473|consensus	326		85.49
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	84.5
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.95
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	83.94
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	83.06
KOG0473|consensus	326		83.03

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.6e-50  Score=477.82  Aligned_cols=544  Identities=20%  Similarity=0.187  Sum_probs=392.5

Q ss_pred             eccCCeEEEEecCCCCCCCccCCCCCCCCCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCcc-CCCCccCC
Q psy8029          20 IDCSHFVGVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVG-VLSPPYFD   98 (693)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~-~l~~~~~~   98 (693)
                      .+||.|.++.|.+              .++++.|+++++.+.......   ...++.|+.|++++|  .++ .++...+.
T Consensus        55 ~~~c~w~gv~c~~--------------~~~v~~L~L~~~~i~~~~~~~---~~~l~~L~~L~Ls~n--~~~~~ip~~~~~  115 (968)
T PLN00113         55 ADVCLWQGITCNN--------------SSRVVSIDLSGKNISGKISSA---IFRLPYIQTINLSNN--QLSGPIPDDIFT  115 (968)
T ss_pred             CCCCcCcceecCC--------------CCcEEEEEecCCCccccCChH---HhCCCCCCEEECCCC--ccCCcCChHHhc
Confidence            5788888888843              136788888888765432121   235778888888887  776 56656666


Q ss_pred             CcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCE
Q psy8029          99 GLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI  178 (693)
Q Consensus        99 ~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  178 (693)
                      ++.+|++|++++| .+++..+  ...+++|++|++++|.+++..+..++++++|++|++++|.+.+..|..+.++++|++
T Consensus       116 ~l~~L~~L~Ls~n-~l~~~~p--~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  192 (968)
T PLN00113        116 TSSSLRYLNLSNN-NFTGSIP--RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF  192 (968)
T ss_pred             cCCCCCEEECcCC-ccccccC--ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence            8888888888888 7765333  245778888888888887644455788888888888888887777777888888888


Q ss_pred             EEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCC
Q psy8029         179 LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKD  258 (693)
Q Consensus       179 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~  258 (693)
                      |++++|++++..+..++.+++|++|++++|.+++..+..+.++++|++|++++|.+....+..|.++++|++|++++|.+
T Consensus       193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  272 (968)
T PLN00113        193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL  272 (968)
T ss_pred             eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence            88888888877777788888888888888888876666678888888888888888765555678888888888888874


Q ss_pred             cccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCCh
Q psy8029         259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE  338 (693)
Q Consensus       259 ~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~  338 (693)
                      .. .+|. .+..+++|+.|++++|.+.+..+..+..+++|+.|++++| .+....+..+..+++|+.|++++|.+....+
T Consensus       273 ~~-~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  349 (968)
T PLN00113        273 SG-PIPP-SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN-NFTGKIPVALTSLPRLQVLQLWSNKFSGEIP  349 (968)
T ss_pred             ec-cCch-hHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC-ccCCcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence            32 3443 3667788888888888877666666777888888888888 5543333445778888888888888774434


Q ss_pred             hhhccCccCceEeccCCcCcc-ccCc-cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCcc
Q psy8029         339 NLFESLKELYTLNLKNNQLEN-ITSL-VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLK  416 (693)
Q Consensus       339 ~~~~~~~~L~~L~Ls~n~l~~-l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  416 (693)
                      ..+..+++|+.|++++|++++ +|.. ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++.    .+..+.
T Consensus       350 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~----~p~~~~  425 (968)
T PLN00113        350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE----LPSEFT  425 (968)
T ss_pred             hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE----CChhHh
Confidence            456777888888888888775 4443 5667788888888888877777777888888888888887755    355677


Q ss_pred             CCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCC
Q psy8029         417 QCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDP  496 (693)
Q Consensus       417 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~  496 (693)
                      .+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..+..+ ..++|+.|++++|++++..+..+..+      
T Consensus       426 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l------  498 (968)
T PLN00113        426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL------  498 (968)
T ss_pred             cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhh------
Confidence            78888888888888888777777778888888888888876655533 34677888888888877666555444      


Q ss_pred             CCccccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCCCCccccccCCCCCcccCCCCCC
Q psy8029         497 NEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPA  576 (693)
Q Consensus       497 ~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~l~c~~~~cp~  576 (693)
                              .+++.+++++|.+....             +.                                        
T Consensus       499 --------~~L~~L~Ls~N~l~~~~-------------p~----------------------------------------  517 (968)
T PLN00113        499 --------SELMQLKLSENKLSGEI-------------PD----------------------------------------  517 (968)
T ss_pred             --------hccCEEECcCCcceeeC-------------Ch----------------------------------------
Confidence                    34667777777643100             00                                        


Q ss_pred             CcEeeecCCCceEEEEcCCCCcc-cCCCCCCCCccccCceEEEEEecCCccccCCCCCCcccccCcEEEccCCccc-ccc
Q psy8029         577 RCYCNFSPYYSIMSVNCSSASLT-HMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNIS-HVD  654 (693)
Q Consensus       577 ~~~~~~~~~~~l~~l~ls~n~l~-~ip~~~~~l~~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~  654 (693)
                          .+..+.+++++++++|.++ .+|..+..+     ..++.|+|++|++++..|..+.++++|+.|++++|+++ .+|
T Consensus       518 ----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        518 ----ELSSCKKLVSLDLSHNQLSGQIPASFSEM-----PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             ----HHcCccCCCEEECCCCcccccCChhHhCc-----ccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence                0111334677788888887 667666665     66777888888888777777777888888888888887 677


Q ss_pred             C--cCCCccEEEeeCCc
Q psy8029         655 T--MYPYLNHLELIDSE  669 (693)
Q Consensus       655 ~--~~~~L~~L~l~~N~  669 (693)
                      .  .+..+....+.+|+
T Consensus       589 ~~~~~~~~~~~~~~~n~  605 (968)
T PLN00113        589 STGAFLAINASAVAGNI  605 (968)
T ss_pred             CcchhcccChhhhcCCc
Confidence            6  33455555666776

>KOG4194|consensus

Probab=100.00  E-value=7.6e-50  Score=402.60  Aligned_cols=439  Identities=23%  Similarity=0.371  Sum_probs=291.6

Q ss_pred             cEEEeecCCCCccCCCCccCCCc--ccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCC-CCCCcE
Q psy8029          78 NTLAFSNSPSNVGVLSPPYFDGL--HFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQY-VPKLQV  154 (693)
Q Consensus        78 ~~L~l~~~~~~i~~l~~~~~~~l--~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~  154 (693)
                      +.|+.++.  .+..+....+.++  +.-+.|++++| .++.+....|.++++|+++++.+|.++.||.  |+. ..+|+.
T Consensus        55 ~lldcs~~--~lea~~~~~l~g~lp~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~--f~~~sghl~~  129 (873)
T KOG4194|consen   55 RLLDCSDR--ELEAIDKSRLKGFLPSQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNELTRIPR--FGHESGHLEK  129 (873)
T ss_pred             eeeecCcc--ccccccccccCCcCccceeeeecccc-ccccCcHHHHhcCCcceeeeeccchhhhccc--ccccccceeE
Confidence            34555555  5555544444432  24456888888 8888887778888888888888888877776  343 345888


Q ss_pred             EEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcc
Q psy8029         155 LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF  234 (693)
Q Consensus       155 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  234 (693)
                      |+|.+|.|..+..+.++.++.|+.|||+.|.|+.++...|..-.++++|+|++|.|+.+..+.|.++.+|..|.|+.|++
T Consensus       130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri  209 (873)
T KOG4194|consen  130 LDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI  209 (873)
T ss_pred             EeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc
Confidence            88888888888777777888888888888888887777777777788888888888888777787777888888888888


Q ss_pred             ccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCCh
Q psy8029         235 QMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS  314 (693)
Q Consensus       235 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~  314 (693)
                      +.+|...|.++++|+.|+|..|+  +..+....|.++++|+.|.+..|++..+...+|.++.++++|++..| .+..+..
T Consensus       210 ttLp~r~Fk~L~~L~~LdLnrN~--irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~  286 (873)
T KOG4194|consen  210 TTLPQRSFKRLPKLESLDLNRNR--IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNE  286 (873)
T ss_pred             cccCHHHhhhcchhhhhhccccc--eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhc
Confidence            88777777777777777777777  43343344666666666666666666665555555555555555555 5555554


Q ss_pred             hhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCc
Q psy8029         315 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLN  394 (693)
Q Consensus       315 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  394 (693)
                      +++-+++.|+.|+++.|.|..|....++-+++|++|+|++|+|+.                      ..+..|..+..|+
T Consensus       287 g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~----------------------l~~~sf~~L~~Le  344 (873)
T KOG4194|consen  287 GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR----------------------LDEGSFRVLSQLE  344 (873)
T ss_pred             ccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc----------------------CChhHHHHHHHhh
Confidence            444455555555555555555544444445555555555555554                      4444454455555


Q ss_pred             EEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCC---hhHHhcCCCCcEEECCCCCCccCCCcccccCCCccE
Q psy8029         395 TVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLF---DDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLT  471 (693)
Q Consensus       395 ~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  471 (693)
                      +|+|++|++...    ...+|.++.+|+.|||++|.++...   ...|.++++|+.|++.||+|..++..+|.+++.|+.
T Consensus       345 ~LnLs~Nsi~~l----~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~  420 (873)
T KOG4194|consen  345 ELNLSHNSIDHL----AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH  420 (873)
T ss_pred             hhcccccchHHH----HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence            555555555443    2344455555555555555544322   223556666666666666666666666666666677


Q ss_pred             EECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceee
Q psy8029         472 LDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLEC  551 (693)
Q Consensus       472 L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  551 (693)
                      |||.+|.|..+.+.+|+.+               .|+.|.+..-.|-|||++.|+.+|+.+.....        .....|
T Consensus       421 LdL~~NaiaSIq~nAFe~m---------------~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~--------sv~a~C  477 (873)
T KOG4194|consen  421 LDLGDNAIASIQPNAFEPM---------------ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQS--------SVIAKC  477 (873)
T ss_pred             ecCCCCcceeecccccccc---------------hhhhhhhcccceEEeccHHHHHHHHHhccccc--------ceeeec
Confidence            7777777766666666554               25677777788999999999999998864322        235689


Q ss_pred             cCC---CCccccccCCCCCcccCCC
Q psy8029         552 FGN---AGVGINSVRPENLTCDTKP  573 (693)
Q Consensus       552 ~~~---~~~~~~~l~~~~l~c~~~~  573 (693)
                      ..|   .+..+.++++.++.|.-.|
T Consensus       478 ayPe~Lad~~i~svd~~~lvC~Dsp  502 (873)
T KOG4194|consen  478 AYPEPLADQSIVSVDTANLVCDDSP  502 (873)
T ss_pred             cCCcccccceeEeechhhceecCCC
Confidence            988   8889999999999998443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3e-47  Score=452.74  Aligned_cols=517  Identities=20%  Similarity=0.214  Sum_probs=442.8

Q ss_pred             ccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcc-cccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCc
Q psy8029          75 TTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEIT-GLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQ  153 (693)
Q Consensus        75 ~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  153 (693)
                      ..++.|+++++  .++...+..|..+++|+.|+|++| .+. .++.+.+..+++|++|++++|.+++..+.  +.+++|+
T Consensus        69 ~~v~~L~L~~~--~i~~~~~~~~~~l~~L~~L~Ls~n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~  143 (968)
T PLN00113         69 SRVVSIDLSGK--NISGKISSAIFRLPYIQTINLSNN-QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLE  143 (968)
T ss_pred             CcEEEEEecCC--CccccCChHHhCCCCCCEEECCCC-ccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCC
Confidence            46899999998  888766788999999999999999 887 58888888999999999999999864332  4689999


Q ss_pred             EEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCc
Q psy8029         154 VLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR  233 (693)
Q Consensus       154 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~  233 (693)
                      +|++++|.+.+..+..++++++|++|++++|.+.+..+..++++++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus       144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  223 (968)
T PLN00113        144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN  223 (968)
T ss_pred             EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence            99999999998878889999999999999999998888889999999999999999998777788999999999999999


Q ss_pred             cccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCC
Q psy8029         234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP  313 (693)
Q Consensus       234 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~  313 (693)
                      +....+..+.++++|++|++++|.+.. .+|. .|..+++|+.|++++|.+.+..+..+..+++|+.|++++| .+....
T Consensus       224 l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~  300 (968)
T PLN00113        224 LSGEIPYEIGGLTSLNHLDLVYNNLTG-PIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN-SLSGEI  300 (968)
T ss_pred             cCCcCChhHhcCCCCCEEECcCceecc-ccCh-hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC-eeccCC
Confidence            986666668999999999999998432 4444 4889999999999999998765566788999999999999 665444


Q ss_pred             hhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCcc-ccCc-cCCCCCCeEeCCCCccccccccccCCCC
Q psy8029         314 STLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN-ITSL-VGLSGLNSLDLSWNQLEQINLIAFDGLS  391 (693)
Q Consensus       314 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  391 (693)
                      +..|..+++|++|++++|.++...+..+..+++|+.|++++|.+++ +|.. ..+++|+.|++++|.+.+..+..+..++
T Consensus       301 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~  380 (968)
T PLN00113        301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG  380 (968)
T ss_pred             ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence            4456899999999999999986666668899999999999999986 5554 7889999999999999998888999999


Q ss_pred             CCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccE
Q psy8029         392 SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLT  471 (693)
Q Consensus       392 ~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  471 (693)
                      +|+.|++++|.+.+.    .+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|+.
T Consensus       381 ~L~~L~l~~n~l~~~----~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  456 (968)
T PLN00113        381 NLFKLILFSNSLEGE----IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM  456 (968)
T ss_pred             CCCEEECcCCEeccc----CCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcE
Confidence            999999999999866    4667888999999999999999988989999999999999999999988877788999999


Q ss_pred             EECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceee
Q psy8029         472 LDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLEC  551 (693)
Q Consensus       472 L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  551 (693)
                      |++++|++.+..+..+..               .+++.+++++|.+.....                             
T Consensus       457 L~L~~n~~~~~~p~~~~~---------------~~L~~L~ls~n~l~~~~~-----------------------------  492 (968)
T PLN00113        457 LSLARNKFFGGLPDSFGS---------------KRLENLDLSRNQFSGAVP-----------------------------  492 (968)
T ss_pred             EECcCceeeeecCccccc---------------ccceEEECcCCccCCccC-----------------------------
Confidence            999999998755443321               458899999998641100                             


Q ss_pred             cCCCCccccccCCCCCcccCCCCCCCcEeeecCCCceEEEEcCCCCcc-cCCCCCCCCccccCceEEEEEecCCccccCC
Q psy8029         552 FGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLT-HMPDYLPVTYEDKKATSIQLILHNNSINHFL  630 (693)
Q Consensus       552 ~~~~~~~~~~l~~~~l~c~~~~cp~~~~~~~~~~~~l~~l~ls~n~l~-~ip~~~~~l~~~~~~~l~~L~Ls~N~l~~~~  630 (693)
                                              .    .+..+..++.+++++|.++ .+|+.+..+     ..++.|+|++|.+++.+
T Consensus       493 ------------------------~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~  539 (968)
T PLN00113        493 ------------------------R----KLGSLSELMQLKLSENKLSGEIPDELSSC-----KKLVSLDLSHNQLSGQI  539 (968)
T ss_pred             ------------------------h----hhhhhhccCEEECcCCcceeeCChHHcCc-----cCCCEEECCCCcccccC
Confidence                                    0    0112334788999999998 888888776     77899999999999999


Q ss_pred             CCCCcccccCcEEEccCCccc-cccC---cCCCccEEEeeCCceeEecCCCccc
Q psy8029         631 ESPPESYKLITDLDLSYNNIS-HVDT---MYPYLNHLELIDSEKIICHGSTKPL  680 (693)
Q Consensus       631 ~~~~~~l~~L~~L~Ls~N~l~-~i~~---~~~~L~~L~l~~N~l~~~~~~~~~~  680 (693)
                      |..++++++|+.|+|++|+++ .+|.   .+++|++|++++|++...-++...+
T Consensus       540 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~  593 (968)
T PLN00113        540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF  593 (968)
T ss_pred             ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchh
Confidence            999999999999999999999 7887   5789999999999998766555443

>KOG4194|consensus

Probab=100.00  E-value=5.8e-42  Score=345.76  Aligned_cols=373  Identities=24%  Similarity=0.374  Sum_probs=220.3

Q ss_pred             ccCCCCCCCCCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCC-cccccEEEccCCcCcccc
Q psy8029          39 YDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDG-LHFVKHILLSHNKEITGL  117 (693)
Q Consensus        39 ~~~l~~~~~~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~-l~~L~~L~Ls~n~~i~~~  117 (693)
                      +..++..-++..+.|+++++.+.+.++..+   ..+++|+++++..|  .++.||  .|++ ..+|+.|+|.+| .|+.+
T Consensus        69 ~~~l~g~lp~~t~~LdlsnNkl~~id~~~f---~nl~nLq~v~l~~N--~Lt~IP--~f~~~sghl~~L~L~~N-~I~sv  140 (873)
T KOG4194|consen   69 KSRLKGFLPSQTQTLDLSNNKLSHIDFEFF---YNLPNLQEVNLNKN--ELTRIP--RFGHESGHLEKLDLRHN-LISSV  140 (873)
T ss_pred             ccccCCcCccceeeeeccccccccCcHHHH---hcCCcceeeeeccc--hhhhcc--cccccccceeEEeeecc-ccccc
Confidence            444455444455566666666655554443   34555666666665  666665  2333 334666666666 66666


Q ss_pred             cccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCC
Q psy8029         118 HKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNV  197 (693)
Q Consensus       118 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  197 (693)
                      ....++.++.|+.|||+.|.|++++...|..-.++++|+|++|+|+.+..+.|..+.+|..|.|+.|+++.++...|.++
T Consensus       141 ~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L  220 (873)
T KOG4194|consen  141 TSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRL  220 (873)
T ss_pred             cHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhc
Confidence            66556666666666666666666665555555566666666666666666666666666666666666666666666666


Q ss_pred             CCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEE
Q psy8029         198 PNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTV  277 (693)
Q Consensus       198 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L  277 (693)
                      ++|+.|+|..|+|..+.--.|.++++|+.|.+..|.+..+..++|..+.++++|+|+.|+  +..+..+++.++..|+.|
T Consensus       221 ~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~--l~~vn~g~lfgLt~L~~L  298 (873)
T KOG4194|consen  221 PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR--LQAVNEGWLFGLTSLEQL  298 (873)
T ss_pred             chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch--hhhhhcccccccchhhhh
Confidence            666666666666655544446666666666666666666666666666666666666665  445555555556666666


Q ss_pred             EcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcC
Q psy8029         278 ILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL  357 (693)
Q Consensus       278 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l  357 (693)
                      +++.|.|..+..+.+..+++|++|+++.| .++.++++.|..+..|++|.|++|.+..+....|..+.+|++|+|++|.+
T Consensus       299 ~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l  377 (873)
T KOG4194|consen  299 DLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL  377 (873)
T ss_pred             ccchhhhheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence            66666666655555555666666666666 66666666666666666666666666666666666666666666666665


Q ss_pred             cc-ccCc----cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECC
Q psy8029         358 EN-ITSL----VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLS  427 (693)
Q Consensus       358 ~~-l~~~----~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls  427 (693)
                      +. +.+.    .++++|+.|++.+|++..+...+|.++++|++|+|.+|.|....    +.+|..+ .|++|.+.
T Consensus       378 s~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq----~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  378 SWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQ----PNAFEPM-ELKELVMN  447 (873)
T ss_pred             EEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeec----ccccccc-hhhhhhhc
Confidence            54 2211    45566666666666666666666666666666666666555442    4455555 55555444

>KOG4237|consensus

Probab=100.00  E-value=3.2e-42  Score=333.13  Aligned_cols=413  Identities=25%  Similarity=0.348  Sum_probs=278.8

Q ss_pred             CCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEec-CCCcccccCccccCCCCCccEE
Q psy8029         199 NLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISY-HKDSLKELPSGLFANLPLLNTV  277 (693)
Q Consensus       199 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-n~~~~~~i~~~~~~~l~~L~~L  277 (693)
                      .-..++|..|+|+.+|+++|+.+++|+.|+|++|.|+.|.+.+|.+++.+..|.+.+ |+  ++.+|.++|.++..++.|
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk--I~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK--ITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc--hhhhhhhHhhhHHHHHHH
Confidence            345566666666666666666666666666666666666666666555555554444 44  445555555555555555


Q ss_pred             EcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcC
Q psy8029         278 ILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL  357 (693)
Q Consensus       278 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l  357 (693)
                      .+.-|++..+...+|..++++..|.+.+| .+..++...|..+..++.+.+..|.+...     .+++.+.. ++.-+.+
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icd-----CnL~wla~-~~a~~~i  218 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICD-----CNLPWLAD-DLAMNPI  218 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccc-----cccchhhh-HHhhchh
Confidence            55555555444444444444444444444 44444444444444444444444331100     00000000 0000000


Q ss_pred             ccccCccCCCCCCeEeCCCCccccccccccCCC-CCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCCh
Q psy8029         358 ENITSLVGLSGLNSLDLSWNQLEQINLIAFDGL-SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD  436 (693)
Q Consensus       358 ~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  436 (693)
                          ..++..-..-..+.+.++..+.+..|... ..+..--.+.+......   ....|+.+++|+.|+|++|+|+++.+
T Consensus       219 ----etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~c---P~~cf~~L~~L~~lnlsnN~i~~i~~  291 (498)
T KOG4237|consen  219 ----ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSIC---PAKCFKKLPNLRKLNLSNNKITRIED  291 (498)
T ss_pred             ----hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcC---hHHHHhhcccceEeccCCCccchhhh
Confidence                00222223333444555555555444321 11111111222222222   13458899999999999999999999


Q ss_pred             hHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCc
Q psy8029         437 DWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNP  516 (693)
Q Consensus       437 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np  516 (693)
                      .+|.+...+++|.|..|+|..+....|.+++.|+.|+|++|+|+.+.+.+|+.+.              .+..+.+-.||
T Consensus       292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~--------------~l~~l~l~~Np  357 (498)
T KOG4237|consen  292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF--------------SLSTLNLLSNP  357 (498)
T ss_pred             hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc--------------eeeeeehccCc
Confidence            9999999999999999999999999999999999999999999999999998764              47899999999


Q ss_pred             ccccCCcHHHHHHHhcccccceeeeeeeccCceeecCC---CCccccccCCCCCcccCC---------CCCCCcEeeecC
Q psy8029         517 IACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINSVRPENLTCDTK---------PCPARCYCNFSP  584 (693)
Q Consensus       517 ~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~~~~l~c~~~---------~cp~~~~~~~~~  584 (693)
                      |.|+|.+.|+..|++++-          ...+..|..|   ++.++.++...++.|.-+         +||..|.|.   
T Consensus       358 ~~CnC~l~wl~~Wlr~~~----------~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~---  424 (498)
T KOG4237|consen  358 FNCNCRLAWLGEWLRKKS----------VVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCL---  424 (498)
T ss_pred             ccCccchHHHHHHHhhCC----------CCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchh---
Confidence            999999999999999862          3346789988   888999999999988743         599999887   


Q ss_pred             CCceEEEEcCCCCcccCCCCCCCCccccCceEEEEEecCCccccCCCCCCcccccCcEEEccCCccccccC----cCCCc
Q psy8029         585 YYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNISHVDT----MYPYL  660 (693)
Q Consensus       585 ~~~l~~l~ls~n~l~~ip~~~~~l~~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~~L  660 (693)
                         -+++.||++.++.+|..++..       .++|++.+|.++.++.+   .++.| .+|+++|+++.+..    .++.|
T Consensus       425 ---~tVvRcSnk~lk~lp~~iP~d-------~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~tql  490 (498)
T KOG4237|consen  425 ---DTVVRCSNKLLKLLPRGIPVD-------VTELYLDGNAITSVPDE---LLRSL-LLDLSNNRISSLSNYTFSNMTQL  490 (498)
T ss_pred             ---hhhHhhcccchhhcCCCCCch-------hHHHhcccchhcccCHH---HHhhh-hcccccCceehhhcccccchhhh
Confidence               468899999999999998865       57899999999988765   67788 99999999998877    56889


Q ss_pred             cEEEeeCC
Q psy8029         661 NHLELIDS  668 (693)
Q Consensus       661 ~~L~l~~N  668 (693)
                      .+|-|++|
T Consensus       491 ~tlilsyn  498 (498)
T KOG4237|consen  491 STLILSYN  498 (498)
T ss_pred             heeEEecC
Confidence            99999887

>KOG0472|consensus

Probab=100.00  E-value=1.7e-39  Score=314.54  Aligned_cols=475  Identities=23%  Similarity=0.335  Sum_probs=295.8

Q ss_pred             ccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEcc
Q psy8029         103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD  182 (693)
Q Consensus       103 L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  182 (693)
                      |+.+.+++| .+..+.++ ..++..|.+|++++|+++.+|+.+ +.+..++.++.++|++..+++. +..+.+|+.++.+
T Consensus        47 l~~lils~N-~l~~l~~d-l~nL~~l~vl~~~~n~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~-i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   47 LQKLILSHN-DLEVLRED-LKNLACLTVLNVHDNKLSQLPAAI-GELEALKSLNVSHNKLSELPEQ-IGSLISLVKLDCS  122 (565)
T ss_pred             hhhhhhccC-chhhccHh-hhcccceeEEEeccchhhhCCHHH-HHHHHHHHhhcccchHhhccHH-Hhhhhhhhhhhcc
Confidence            445555555 55444443 344555555555555555555442 5555555555555555555433 3455555555555


Q ss_pred             CCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccc
Q psy8029         183 HNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKE  262 (693)
Q Consensus       183 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~  262 (693)
                      +|.+..++++ ++.+..|+.++..+|+++++|++ +.++.+|..+++.+|.+...++.... ++.|++++...|.  .+.
T Consensus       123 ~n~~~el~~~-i~~~~~l~dl~~~~N~i~slp~~-~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~--L~t  197 (565)
T KOG0472|consen  123 SNELKELPDS-IGRLLDLEDLDATNNQISSLPED-MVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNL--LET  197 (565)
T ss_pred             ccceeecCch-HHHHhhhhhhhccccccccCchH-HHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhh--hhc
Confidence            5555555443 34555555555555555555544 23455555566666666655555443 5666666655555  445


Q ss_pred             cCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhc
Q psy8029         263 LPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFE  342 (693)
Q Consensus       263 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  342 (693)
                      +|+. ++.+.+|..|++..|++..+|  .|.+|..|++++++.| ++..+|....++++++..||+.+|+++++|.++ .
T Consensus       198 lP~~-lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~-c  272 (565)
T KOG0472|consen  198 LPPE-LGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEI-C  272 (565)
T ss_pred             CChh-hcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccccccccCchHH-H
Confidence            5555 456666666666666666666  3566666667766666 666677666667777777777777777777664 4


Q ss_pred             cCccCceEeccCCcCccccCc-cCCCCCCeEeCCCCccccccccccCCCC--CCcEEE-------CCCCcCccc----cc
Q psy8029         343 SLKELYTLNLKNNQLENITSL-VGLSGLNSLDLSWNQLEQINLIAFDGLS--SLNTVD-------LSHNLLTFD----EY  408 (693)
Q Consensus       343 ~~~~L~~L~Ls~n~l~~l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~-------L~~n~l~~~----~~  408 (693)
                      -+++|..||+++|.|+++|.. +++ .|+.|-+.+|.+..+..+.+..-+  -|++|.       ++...=...    ..
T Consensus       273 lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~  351 (565)
T KOG0472|consen  273 LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLP  351 (565)
T ss_pred             HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCC
Confidence            566677777777777777666 555 677777777776655443332210  111111       111100000    00


Q ss_pred             ccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCC--CCcEEECCCCCCccCCCcccccCCC-ccEEECCCCCCceeecc
Q psy8029         409 QYGYSPLKQCVNLETINLSYNRISSLFDDWISSMT--SLKELDLRHNNFSFIPDQLDSIVSN-KLTLDLSFNQIAIVDLR  485 (693)
Q Consensus       409 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~  485 (693)
                      ...........+.+.|++++-+++.++...|....  -...+++++|++.++|.. +..+.. .+.+.+++|.++.++. 
T Consensus       352 ~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~-L~~lkelvT~l~lsnn~isfv~~-  429 (565)
T KOG0472|consen  352 SESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKR-LVELKELVTDLVLSNNKISFVPL-  429 (565)
T ss_pred             CCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhh-hHHHHHHHHHHHhhcCccccchH-
Confidence            01122234456788999999999999888776443  378899999999998876 233333 3567888888876542 


Q ss_pred             chhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCCCCccccccCCC
Q psy8029         486 TLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPE  565 (693)
Q Consensus       486 ~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~  565 (693)
                      .+..+              +++..+++++|++. +             ++.+                            
T Consensus       430 ~l~~l--------------~kLt~L~L~NN~Ln-~-------------LP~e----------------------------  453 (565)
T KOG0472|consen  430 ELSQL--------------QKLTFLDLSNNLLN-D-------------LPEE----------------------------  453 (565)
T ss_pred             HHHhh--------------hcceeeecccchhh-h-------------cchh----------------------------
Confidence            22222              45778899988751 1             1100                            


Q ss_pred             CCcccCCCCCCCcEeeecCCCceEEEEcCCCCcccCCCCCCCCccccCceEEEEEecCCccccCCCCCCcccccCcEEEc
Q psy8029         566 NLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDL  645 (693)
Q Consensus       566 ~l~c~~~~cp~~~~~~~~~~~~l~~l~ls~n~l~~ip~~~~~l~~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  645 (693)
                                      +..+..++.+|+|.|++..+|...-..     ..+..+--++|++..++++.+.++++|.+|||
T Consensus       454 ----------------~~~lv~Lq~LnlS~NrFr~lP~~~y~l-----q~lEtllas~nqi~~vd~~~l~nm~nL~tLDL  512 (565)
T KOG0472|consen  454 ----------------MGSLVRLQTLNLSFNRFRMLPECLYEL-----QTLETLLASNNQIGSVDPSGLKNMRNLTTLDL  512 (565)
T ss_pred             ----------------hhhhhhhheecccccccccchHHHhhH-----HHHHHHHhccccccccChHHhhhhhhcceecc
Confidence                            011233789999999999999866554     23344555669999999999999999999999


Q ss_pred             cCCccccccC---cCCCccEEEeeCCcee
Q psy8029         646 SYNNISHVDT---MYPYLNHLELIDSEKI  671 (693)
Q Consensus       646 s~N~l~~i~~---~~~~L~~L~l~~N~l~  671 (693)
                      .+|.+..||+   .+++|++|++.|||+.
T Consensus       513 ~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  513 QNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             CCCchhhCChhhccccceeEEEecCCccC
Confidence            9999999999   7899999999999987

>KOG0472|consensus

Probab=100.00  E-value=3e-38  Score=305.90  Aligned_cols=478  Identities=22%  Similarity=0.290  Sum_probs=356.0

Q ss_pred             cccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCc
Q psy8029          74 ITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQ  153 (693)
Q Consensus        74 ~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  153 (693)
                      ...++.+.++++  .++.+. ..+.++..|.+|++++| ++...|+. ++.+..++.++.++|+++.+|+.. ..+.+|+
T Consensus        44 qv~l~~lils~N--~l~~l~-~dl~nL~~l~vl~~~~n-~l~~lp~a-ig~l~~l~~l~vs~n~ls~lp~~i-~s~~~l~  117 (565)
T KOG0472|consen   44 QVDLQKLILSHN--DLEVLR-EDLKNLACLTVLNVHDN-KLSQLPAA-IGELEALKSLNVSHNKLSELPEQI-GSLISLV  117 (565)
T ss_pred             hcchhhhhhccC--chhhcc-HhhhcccceeEEEeccc-hhhhCCHH-HHHHHHHHHhhcccchHhhccHHH-hhhhhhh
Confidence            445788889888  888777 57888999999999999 88888876 577888999999999998888874 7788999


Q ss_pred             EEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCc
Q psy8029         154 VLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR  233 (693)
Q Consensus       154 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~  233 (693)
                      .++.++|.+..++++ ++.+..|+.++..+|+++..++. +.++.+|..+++.+|.++..++.... ++.|++|+...|.
T Consensus       118 ~l~~s~n~~~el~~~-i~~~~~l~dl~~~~N~i~slp~~-~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~  194 (565)
T KOG0472|consen  118 KLDCSSNELKELPDS-IGRLLDLEDLDATNNQISSLPED-MVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNL  194 (565)
T ss_pred             hhhccccceeecCch-HHHHhhhhhhhccccccccCchH-HHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhh
Confidence            999999998888766 67788899999999999888765 57888999999999999998887665 8999999999999


Q ss_pred             cccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCC
Q psy8029         234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP  313 (693)
Q Consensus       234 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~  313 (693)
                      ++.+|+. ++.+.+|+.|++..|+  +..+|+  |.+|..|.+++++.|.+..+|+.....+.++..|++.+| ++.++|
T Consensus       195 L~tlP~~-lg~l~~L~~LyL~~Nk--i~~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~P  268 (565)
T KOG0472|consen  195 LETLPPE-LGGLESLELLYLRRNK--IRFLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVP  268 (565)
T ss_pred             hhcCChh-hcchhhhHHHHhhhcc--cccCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCc
Confidence            9999987 5789999999999998  667884  889999999999999999999888888999999999999 999999


Q ss_pred             hhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc--cC--CCCCCeEe-------CCCCcc---
Q psy8029         314 STLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL--VG--LSGLNSLD-------LSWNQL---  379 (693)
Q Consensus       314 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~--l~~L~~L~-------Ls~n~l---  379 (693)
                      .++ .-+.+|+.||+++|.++.+|... +++ +|+.|.+.+|.+..+...  .+  -.-|++|.       ++.-.=   
T Consensus       269 de~-clLrsL~rLDlSNN~is~Lp~sL-gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e  345 (565)
T KOG0472|consen  269 DEI-CLLRSLERLDLSNNDISSLPYSL-GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE  345 (565)
T ss_pred             hHH-HHhhhhhhhcccCCccccCCccc-ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence            886 46788999999999999999864 778 899999999998765432  00  00111111       111100   


Q ss_pred             c--cccccccC---CCCCCcEEECCCCcCcccccccCCCCccC--CCCCcEEECCCCCCCcCChhHHhcCCCC-cEEECC
Q psy8029         380 E--QINLIAFD---GLSSLNTVDLSHNLLTFDEYQYGYSPLKQ--CVNLETINLSYNRISSLFDDWISSMTSL-KELDLR  451 (693)
Q Consensus       380 ~--~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~  451 (693)
                      +  +..+..|.   ...+.+.|++++-+++...    ...|..  -.-...++++.|++..++.. +..+..+ +.+.++
T Consensus       346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VP----dEVfea~~~~~Vt~VnfskNqL~elPk~-L~~lkelvT~l~ls  420 (565)
T KOG0472|consen  346 TAMTLPSESFPDIYAIITTKILDVSDKQLTLVP----DEVFEAAKSEIVTSVNFSKNQLCELPKR-LVELKELVTDLVLS  420 (565)
T ss_pred             ccCCCCCCcccchhhhhhhhhhcccccccccCC----HHHHHHhhhcceEEEecccchHhhhhhh-hHHHHHHHHHHHhh
Confidence            0  00111222   2456788888887777552    122221  12377888999988887655 3444443 345556


Q ss_pred             CCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHh
Q psy8029         452 HNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVS  531 (693)
Q Consensus       452 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~  531 (693)
                      +|.++.+ +..+..++++..|+|++|.+..++.+...-               ..++.++++.|.|.|-=.....     
T Consensus       421 nn~isfv-~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~l---------------v~Lq~LnlS~NrFr~lP~~~y~-----  479 (565)
T KOG0472|consen  421 NNKISFV-PLELSQLQKLTFLDLSNNLLNDLPEEMGSL---------------VRLQTLNLSFNRFRMLPECLYE-----  479 (565)
T ss_pred             cCccccc-hHHHHhhhcceeeecccchhhhcchhhhhh---------------hhhheecccccccccchHHHhh-----
Confidence            6655544 444778888889999998888876554332               2377889999887651100000     


Q ss_pred             cccccceeeeeeeccCceeecCCCCccccccCCCCCcccCCCCCCCcEeeecCCCceEEEEcCCCCcccCCCC-CCCCcc
Q psy8029         532 KKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDY-LPVTYE  610 (693)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~l~c~~~~cp~~~~~~~~~~~~l~~l~ls~n~l~~ip~~-~~~l~~  610 (693)
                                                                           ...++.+-.+.|++..+|+. +..+  
T Consensus       480 -----------------------------------------------------lq~lEtllas~nqi~~vd~~~l~nm--  504 (565)
T KOG0472|consen  480 -----------------------------------------------------LQTLETLLASNNQIGSVDPSGLKNM--  504 (565)
T ss_pred             -----------------------------------------------------HHHHHHHHhccccccccChHHhhhh--
Confidence                                                                 11123333455777777655 5555  


Q ss_pred             ccCceEEEEEecCCccccCCCCCCcccccCcEEEccCCccccccC
Q psy8029         611 DKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNISHVDT  655 (693)
Q Consensus       611 ~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~  655 (693)
                         ..++.|||.+|.|..+||. ++++++|+.|++.+|.++ .|.
T Consensus       505 ---~nL~tLDL~nNdlq~IPp~-LgnmtnL~hLeL~gNpfr-~Pr  544 (565)
T KOG0472|consen  505 ---RNLTTLDLQNNDLQQIPPI-LGNMTNLRHLELDGNPFR-QPR  544 (565)
T ss_pred             ---hhcceeccCCCchhhCChh-hccccceeEEEecCCccC-CCH
Confidence               6788999999999988886 899999999999999999 444

>KOG0618|consensus

Probab=99.97  E-value=4.3e-34  Score=304.16  Aligned_cols=398  Identities=21%  Similarity=0.260  Sum_probs=244.7

Q ss_pred             ccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCc
Q psy8029          50 FNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLE  129 (693)
Q Consensus        50 l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~  129 (693)
                      +..|.++.+.+-...+..+-.  .++ |+.|+++++  .+...+ ..+..+++|+.|.++.| .|..++. ...++.+|+
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~--~v~-L~~l~lsnn--~~~~fp-~~it~l~~L~~ln~s~n-~i~~vp~-s~~~~~~l~   94 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEK--RVK-LKSLDLSNN--QISSFP-IQITLLSHLRQLNLSRN-YIRSVPS-SCSNMRNLQ   94 (1081)
T ss_pred             HHhhhccccccccCchHHhhh--eee-eEEeecccc--ccccCC-chhhhHHHHhhcccchh-hHhhCch-hhhhhhcch
Confidence            455555555444433222211  223 666666666  555554 34555666667777766 6666663 355666677


Q ss_pred             EEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCC
Q psy8029         130 SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN  209 (693)
Q Consensus       130 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  209 (693)
                      +|.|.+|.+..+|.+ +..+.+|+.|++++|.+..++.- +..+..+..+..++|.....    ++.. ..+.+++..|.
T Consensus        95 ~lnL~~n~l~~lP~~-~~~lknl~~LdlS~N~f~~~Pl~-i~~lt~~~~~~~s~N~~~~~----lg~~-~ik~~~l~~n~  167 (1081)
T KOG0618|consen   95 YLNLKNNRLQSLPAS-ISELKNLQYLDLSFNHFGPIPLV-IEVLTAEEELAASNNEKIQR----LGQT-SIKKLDLRLNV  167 (1081)
T ss_pred             hheeccchhhcCchh-HHhhhcccccccchhccCCCchh-HHhhhHHHHHhhhcchhhhh----hccc-cchhhhhhhhh
Confidence            777766666666654 46666677777777666655433 45566666666666611111    1111 16666666666


Q ss_pred             CCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCc
Q psy8029         210 ISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS  289 (693)
Q Consensus       210 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~  289 (693)
                      +..-.......++.  .|+|.+|.+....   +..+.+|+.+....|++.  .+.    -.-++++.|+.+.|.+..+..
T Consensus       168 l~~~~~~~i~~l~~--~ldLr~N~~~~~d---ls~~~~l~~l~c~rn~ls--~l~----~~g~~l~~L~a~~n~l~~~~~  236 (1081)
T KOG0618|consen  168 LGGSFLIDIYNLTH--QLDLRYNEMEVLD---LSNLANLEVLHCERNQLS--ELE----ISGPSLTALYADHNPLTTLDV  236 (1081)
T ss_pred             cccchhcchhhhhe--eeecccchhhhhh---hhhccchhhhhhhhcccc--eEE----ecCcchheeeeccCcceeecc
Confidence            65433333344443  5777777766222   455677777777777632  221    134577777777777764332


Q ss_pred             ccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc-cCCCC
Q psy8029         290 DLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL-VGLSG  368 (693)
Q Consensus       290 ~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~-~~l~~  368 (693)
                      .  ....+|+.++++.| .+..+| .+...+.+|+.++..+|.++.+|...+ ...+|+.|....|.+..+|.. .+.++
T Consensus       237 ~--p~p~nl~~~dis~n-~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~-~~~~L~~l~~~~nel~yip~~le~~~s  311 (1081)
T KOG0618|consen  237 H--PVPLNLQYLDISHN-NLSNLP-EWIGACANLEALNANHNRLVALPLRIS-RITSLVSLSAAYNELEYIPPFLEGLKS  311 (1081)
T ss_pred             c--cccccceeeecchh-hhhcch-HHHHhcccceEecccchhHHhhHHHHh-hhhhHHHHHhhhhhhhhCCCcccccce
Confidence            1  23457788888887 777777 444677888888888888877777653 567788888888888877777 56778


Q ss_pred             CCeEeCCCCccccccccccCCCCC-CcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcE
Q psy8029         369 LNSLDLSWNQLEQINLIAFDGLSS-LNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKE  447 (693)
Q Consensus       369 L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  447 (693)
                      |++|+|..|.+...+...|.-... |+.|+.+.|++....    ...-...+.|+.|.+.+|.+++-....+.+.++|+.
T Consensus       312 L~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp----~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV  387 (1081)
T KOG0618|consen  312 LRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP----SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKV  387 (1081)
T ss_pred             eeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc----cccchhhHHHHHHHHhcCcccccchhhhccccceee
Confidence            888888888877777655554443 667777777666442    122233456677777777777654445666677777


Q ss_pred             EECCCCCCccCCCcccccCCCccEEECCCCCCcee
Q psy8029         448 LDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIV  482 (693)
Q Consensus       448 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  482 (693)
                      |+|++|++..+|...+..++.|+.|+||+|+++.+
T Consensus       388 LhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L  422 (1081)
T KOG0618|consen  388 LHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL  422 (1081)
T ss_pred             eeecccccccCCHHHHhchHHhHHHhcccchhhhh
Confidence            77777777777666666666666666666666644

>KOG0618|consensus

Probab=99.96  E-value=3.5e-32  Score=289.69  Aligned_cols=415  Identities=21%  Similarity=0.209  Sum_probs=307.2

Q ss_pred             EEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEE
Q psy8029          53 VTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLN  132 (693)
Q Consensus        53 L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~  132 (693)
                      ++.+.|.++-....-. .   -..++.|++..|  .+-..|-....+.-+|+.||+++| .+...|.. +..+++|+.|+
T Consensus         3 vd~s~~~l~~ip~~i~-~---~~~~~~ln~~~N--~~l~~pl~~~~~~v~L~~l~lsnn-~~~~fp~~-it~l~~L~~ln   74 (1081)
T KOG0618|consen    3 VDASDEQLELIPEQIL-N---NEALQILNLRRN--SLLSRPLEFVEKRVKLKSLDLSNN-QISSFPIQ-ITLLSHLRQLN   74 (1081)
T ss_pred             cccccccCcccchhhc-c---HHHHHhhhcccc--ccccCchHHhhheeeeEEeecccc-ccccCCch-hhhHHHHhhcc
Confidence            4566676654332222 1   122677888877  555555445566667999999999 88887765 56788999999


Q ss_pred             eeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCC-CCC
Q psy8029         133 LRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN-NIS  211 (693)
Q Consensus       133 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~  211 (693)
                      ++.|-|..+|.. ..++.+|+++.|.+|.+...+.. +..+.+|++|++++|++..++.- +..+..++.+..++| .+.
T Consensus        75 ~s~n~i~~vp~s-~~~~~~l~~lnL~~n~l~~lP~~-~~~lknl~~LdlS~N~f~~~Pl~-i~~lt~~~~~~~s~N~~~~  151 (1081)
T KOG0618|consen   75 LSRNYIRSVPSS-CSNMRNLQYLNLKNNRLQSLPAS-ISELKNLQYLDLSFNHFGPIPLV-IEVLTAEEELAASNNEKIQ  151 (1081)
T ss_pred             cchhhHhhCchh-hhhhhcchhheeccchhhcCchh-HHhhhcccccccchhccCCCchh-HHhhhHHHHHhhhcchhhh
Confidence            999999888854 57889999999999988777544 78899999999999999877654 567788888889988 222


Q ss_pred             cCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCccc
Q psy8029         212 ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDL  291 (693)
Q Consensus       212 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~  291 (693)
                      .++     ... .+.+++..|.+..-.......+..  .+++.+|.  +..   .....+++|+.+....|++..+.   
T Consensus       152 ~lg-----~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~--~~~---~dls~~~~l~~l~c~rn~ls~l~---  215 (1081)
T KOG0618|consen  152 RLG-----QTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNE--MEV---LDLSNLANLEVLHCERNQLSELE---  215 (1081)
T ss_pred             hhc-----ccc-chhhhhhhhhcccchhcchhhhhe--eeecccch--hhh---hhhhhccchhhhhhhhcccceEE---
Confidence            222     222 677777777666322222334444  68999887  321   22567888999999888887664   


Q ss_pred             ccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc-cCCCCCC
Q psy8029         292 FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL-VGLSGLN  370 (693)
Q Consensus       292 ~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~-~~l~~L~  370 (693)
                       -..++++.|+.+.| .+..+...  ....+|+.++++.|+++.+| .+...+.+|+.++..+|+++.+|.. ...++|+
T Consensus       216 -~~g~~l~~L~a~~n-~l~~~~~~--p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~  290 (1081)
T KOG0618|consen  216 -ISGPSLTALYADHN-PLTTLDVH--PVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLV  290 (1081)
T ss_pred             -ecCcchheeeeccC-cceeeccc--cccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHH
Confidence             23478899999998 55543332  23467999999999999999 5568899999999999999887766 7788999


Q ss_pred             eEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCC-CCcEEECCCCCCCcCChhHHhcCCCCcEEE
Q psy8029         371 SLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCV-NLETINLSYNRISSLFDDWISSMTSLKELD  449 (693)
Q Consensus       371 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  449 (693)
                      .|.+.+|.++.+++ ...+.++|++|+|..|.+....    ...+.... +|+.|+.+.|.+...+...=...+.|+.|.
T Consensus       291 ~l~~~~nel~yip~-~le~~~sL~tLdL~~N~L~~lp----~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Ly  365 (1081)
T KOG0618|consen  291 SLSAAYNELEYIPP-FLEGLKSLRTLDLQSNNLPSLP----DNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELY  365 (1081)
T ss_pred             HHHhhhhhhhhCCC-cccccceeeeeeehhccccccc----hHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHH
Confidence            99999999988876 4566889999999999988653    22233333 377888888888876643333667899999


Q ss_pred             CCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCccc
Q psy8029         450 LRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIA  518 (693)
Q Consensus       450 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~  518 (693)
                      +.+|.+++--...+.++..|+.|+|++|++..++...+..+              ..|+.|+|+||.+.
T Consensus       366 lanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kl--------------e~LeeL~LSGNkL~  420 (1081)
T KOG0618|consen  366 LANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKL--------------EELEELNLSGNKLT  420 (1081)
T ss_pred             HhcCcccccchhhhccccceeeeeecccccccCCHHHHhch--------------HHhHHHhcccchhh
Confidence            99999997666667888999999999999998888777766              34788999999863

>KOG0444|consensus

Probab=99.96  E-value=8.4e-32  Score=274.06  Aligned_cols=360  Identities=24%  Similarity=0.376  Sum_probs=236.4

Q ss_pred             cccccEEEeecCCCCcc-CCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCC
Q psy8029          74 ITTINTLAFSNSPSNVG-VLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKL  152 (693)
Q Consensus        74 ~~~L~~L~l~~~~~~i~-~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  152 (693)
                      ++.++-+|+++|  .++ .-.+.....++.++.|.|... ++..+|.. ++.+.+|+.|.+++|++..+... ++.++.|
T Consensus         6 LpFVrGvDfsgN--DFsg~~FP~~v~qMt~~~WLkLnrt-~L~~vPeE-L~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~L   80 (1255)
T KOG0444|consen    6 LPFVRGVDFSGN--DFSGDRFPHDVEQMTQMTWLKLNRT-KLEQVPEE-LSRLQKLEHLSMAHNQLISVHGE-LSDLPRL   80 (1255)
T ss_pred             cceeecccccCC--cCCCCcCchhHHHhhheeEEEechh-hhhhChHH-HHHHhhhhhhhhhhhhhHhhhhh-hccchhh
Confidence            456788888888  777 444567778889999999888 88888866 67888899999999988877655 5788889


Q ss_pred             cEEEcCCCCCC--ccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcC
Q psy8029         153 QVLDLGSNDVA--YMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYAN  230 (693)
Q Consensus       153 ~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  230 (693)
                      +.+++..|++.  +++++. -.+..|+.||||+|++.+.+.. +....++-.|+|++|+|..||...|.+++.|-.|+|+
T Consensus        81 Rsv~~R~N~LKnsGiP~di-F~l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS  158 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIPTDI-FRLKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS  158 (1255)
T ss_pred             HHHhhhccccccCCCCchh-cccccceeeecchhhhhhcchh-hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc
Confidence            99999888765  677664 4688899999999998887654 5777888889999999998888888888888888999


Q ss_pred             CCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCC--CcccCcccccCCCCccEEEecCCCC
Q psy8029         231 SNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS--IAELPSDLFWNSTNITNIVLTGHKK  308 (693)
Q Consensus       231 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~~~L~~L~l~~n~~  308 (693)
                      +|++..+|+. ...+..|++|++++|....  ..-..+..+..|+.|.+++.+  +..+|.. +.++.+|..++++.| .
T Consensus       159 ~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~h--fQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N-~  233 (1255)
T KOG0444|consen  159 NNRLEMLPPQ-IRRLSMLQTLKLSNNPLNH--FQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSEN-N  233 (1255)
T ss_pred             cchhhhcCHH-HHHHhhhhhhhcCCChhhH--HHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhcccccc-C
Confidence            9988888887 4678888888888887321  111112344556666666654  2334433 244555666666655 5


Q ss_pred             CCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc-cCCCCCCeEeCCCCccc--ccccc
Q psy8029         309 LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL-VGLSGLNSLDLSWNQLE--QINLI  385 (693)
Q Consensus       309 l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~-~~l~~L~~L~Ls~n~l~--~~~~~  385 (693)
                      +..+|...+ .+++|+.|++++|+|+++.... ....+|++|+||+|+++.+|.. ..++.|+.|++.+|+++  |+ |.
T Consensus       234 Lp~vPecly-~l~~LrrLNLS~N~iteL~~~~-~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGi-PS  310 (1255)
T KOG0444|consen  234 LPIVPECLY-KLRNLRRLNLSGNKITELNMTE-GEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGI-PS  310 (1255)
T ss_pred             CCcchHHHh-hhhhhheeccCcCceeeeeccH-HHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCC-cc
Confidence            555555543 4555666666666655544332 3345555566666666555554 55555555555555543  22 23


Q ss_pred             ccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCC
Q psy8029         386 AFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNN  454 (693)
Q Consensus       386 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  454 (693)
                      .++.+..|+.+..++|.+.-.     +..+..|..|+.|.|+.|++..+ |+.+.-++.|+.||++.|.
T Consensus       311 GIGKL~~Levf~aanN~LElV-----PEglcRC~kL~kL~L~~NrLiTL-PeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  311 GIGKLIQLEVFHAANNKLELV-----PEGLCRCVKLQKLKLDHNRLITL-PEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             chhhhhhhHHHHhhccccccC-----chhhhhhHHHHHhcccccceeec-hhhhhhcCCcceeeccCCc
Confidence            445555555555555555432     44455555555555555555443 2334555555555555554

>KOG0444|consensus

Probab=99.96  E-value=1.6e-31  Score=272.08  Aligned_cols=383  Identities=24%  Similarity=0.357  Sum_probs=325.5

Q ss_pred             CCCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCC
Q psy8029          47 LGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTP  126 (693)
Q Consensus        47 ~~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~  126 (693)
                      .|-|+-++|+++......++.-.+  .++.++-|.+...  .+..++ ..++.+.+|++|.+++| ++..+... ++.++
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~--qMt~~~WLkLnrt--~L~~vP-eEL~~lqkLEHLs~~HN-~L~~vhGE-Ls~Lp   78 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVE--QMTQMTWLKLNRT--KLEQVP-EELSRLQKLEHLSMAHN-QLISVHGE-LSDLP   78 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHH--HhhheeEEEechh--hhhhCh-HHHHHHhhhhhhhhhhh-hhHhhhhh-hccch
Confidence            466888999999988776665433  5677888888887  888888 68999999999999999 88887754 78899


Q ss_pred             CCcEEEeeCCcccc--cCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEE
Q psy8029         127 QLESLNLRGNSITE--LYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLD  204 (693)
Q Consensus       127 ~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  204 (693)
                      .|+.+++..|++..  ||+++| .+..|.+||||+|++..++.. +..-+++-.|+||+|+|..|+...|-+++.|-.||
T Consensus        79 ~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLD  156 (1255)
T KOG0444|consen   79 RLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLD  156 (1255)
T ss_pred             hhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchh-hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence            99999999998864  888876 699999999999999998765 68889999999999999999999999999999999


Q ss_pred             CcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCC
Q psy8029         205 ISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI  284 (693)
Q Consensus       205 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l  284 (693)
                      |++|++..+|+. ...+..|++|.|++|.+..+....+..+++|++|.+++.+-....+|.. +..+.+|..++++.|.+
T Consensus       157 LS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~L  234 (1255)
T KOG0444|consen  157 LSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNL  234 (1255)
T ss_pred             cccchhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCC
Confidence            999999999987 4778999999999999886555556678899999999988777778876 68899999999999999


Q ss_pred             cccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCc--cccC
Q psy8029         285 AELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE--NITS  362 (693)
Q Consensus       285 ~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~--~l~~  362 (693)
                      ..+|... ..+.+|+.|++++| .++.+.... ....+|++|+++.|+++.+|... ..+++|+.|.+.+|+++  ++|.
T Consensus       235 p~vPecl-y~l~~LrrLNLS~N-~iteL~~~~-~~W~~lEtLNlSrNQLt~LP~av-cKL~kL~kLy~n~NkL~FeGiPS  310 (1255)
T KOG0444|consen  235 PIVPECL-YKLRNLRRLNLSGN-KITELNMTE-GEWENLETLNLSRNQLTVLPDAV-CKLTKLTKLYANNNKLTFEGIPS  310 (1255)
T ss_pred             CcchHHH-hhhhhhheeccCcC-ceeeeeccH-HHHhhhhhhccccchhccchHHH-hhhHHHHHHHhccCcccccCCcc
Confidence            9998655 57899999999999 998887553 55688999999999999999864 78999999999999976  4888


Q ss_pred             c-cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhc
Q psy8029         363 L-VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISS  441 (693)
Q Consensus       363 ~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  441 (693)
                      . ..+..|+.+..++|.+.-+ |..+..|..|+.|.|+.|++...     +.++.-++.|+.||+..|.--..+|.--..
T Consensus       311 GIGKL~~Levf~aanN~LElV-PEglcRC~kL~kL~L~~NrLiTL-----PeaIHlL~~l~vLDlreNpnLVMPPKP~da  384 (1255)
T KOG0444|consen  311 GIGKLIQLEVFHAANNKLELV-PEGLCRCVKLQKLKLDHNRLITL-----PEAIHLLPDLKVLDLRENPNLVMPPKPNDA  384 (1255)
T ss_pred             chhhhhhhHHHHhhccccccC-chhhhhhHHHHHhcccccceeec-----hhhhhhcCCcceeeccCCcCccCCCCcchh
Confidence            8 8899999999999988655 55788999999999999998765     788888999999999999766666542222


Q ss_pred             CCCCcEEEC
Q psy8029         442 MTSLKELDL  450 (693)
Q Consensus       442 l~~L~~L~L  450 (693)
                      -++|+.-++
T Consensus       385 ~~~lefYNI  393 (1255)
T KOG0444|consen  385 RKKLEFYNI  393 (1255)
T ss_pred             hhcceeeec
Confidence            245555444

>KOG4237|consensus

Probab=99.96  E-value=3.8e-31  Score=256.52  Aligned_cols=311  Identities=23%  Similarity=0.326  Sum_probs=244.3

Q ss_pred             cHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeC-CcccccC
Q psy8029          64 NFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRG-NSITELY  142 (693)
Q Consensus        64 ~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~  142 (693)
                      ++.+++..+. .....++|..|  .|+.|++.+|+.+++||+||||+| +|+.|.+++|.++++|.+|-+.+ |+|+.++
T Consensus        57 GL~eVP~~LP-~~tveirLdqN--~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~  132 (498)
T KOG4237|consen   57 GLTEVPANLP-PETVEIRLDQN--QISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLP  132 (498)
T ss_pred             CcccCcccCC-CcceEEEeccC--CcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence            3445544333 23568899998  999999999999999999999999 99999999999999988888777 9999999


Q ss_pred             cccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCc----------
Q psy8029         143 SGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI----------  212 (693)
Q Consensus       143 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~----------  212 (693)
                      .++|+++..|+.|.+.-|++.-+..++|..+++|..|.+++|.+..+....|..+..++.+.+..|.+..          
T Consensus       133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~  212 (498)
T KOG4237|consen  133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD  212 (498)
T ss_pred             hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence            9999999999999999999999999999999999999999999999998899999999999999887321          


Q ss_pred             --CCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEE--EEecCCCcccccCccccCCCCCccEEEcCCCCCcccC
Q psy8029         213 --LPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVI--KISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP  288 (693)
Q Consensus       213 --~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L--~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~  288 (693)
                        ..+..+++........+.+.++..+....|...  ++.+  .+....+.....|...|..+++|+++++++|+++.|.
T Consensus       213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~  290 (498)
T KOG4237|consen  213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE  290 (498)
T ss_pred             HhhchhhcccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh
Confidence              112224444444444555556666666555322  3322  1222222244556667889999999999999999999


Q ss_pred             cccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCcc---------
Q psy8029         289 SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN---------  359 (693)
Q Consensus       289 ~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~---------  359 (693)
                      +.+|.+...++.|.+..| ++..+...+|.++..|+.|++.+|+|+.+.+.+|.....|.+|++-.|.+.-         
T Consensus       291 ~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~  369 (498)
T KOG4237|consen  291 DGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE  369 (498)
T ss_pred             hhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH
Confidence            999999999999999999 9999999999999999999999999998888889999999999988776431         


Q ss_pred             ---------ccCccCCCCCCeEeCCCCcccc
Q psy8029         360 ---------ITSLVGLSGLNSLDLSWNQLEQ  381 (693)
Q Consensus       360 ---------l~~~~~l~~L~~L~Ls~n~l~~  381 (693)
                               .|..+....++.+.+++..+..
T Consensus       370 Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~  400 (498)
T KOG4237|consen  370 WLRKKSVVGNPRCQSPGFVRQIPISDVAFGD  400 (498)
T ss_pred             HHhhCCCCCCCCCCCCchhccccchhccccc
Confidence                     2222444556666666655543

>PLN03210 Resistant to P

Probab=99.86  E-value=2.6e-20  Score=222.24  Aligned_cols=337  Identities=20%  Similarity=0.253  Sum_probs=200.1

Q ss_pred             CCCCccCCCcccccEEEccCCcCcc------c-ccccccCCC-CCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCC
Q psy8029          91 VLSPPYFDGLHFVKHILLSHNKEIT------G-LHKDIFKGT-PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDV  162 (693)
Q Consensus        91 ~l~~~~~~~l~~L~~L~Ls~n~~i~------~-~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l  162 (693)
                      .+...+|.+|++|+.|.+..+ ...      . ++. .|..+ ++|+.|.+.++.++.+|.. | ...+|++|+++++.+
T Consensus       548 ~i~~~aF~~m~~L~~L~~~~~-~~~~~~~~~~~lp~-~~~~lp~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s~l  623 (1153)
T PLN03210        548 HIHENAFKGMRNLLFLKFYTK-KWDQKKEVRWHLPE-GFDYLPPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGSKL  623 (1153)
T ss_pred             eecHHHHhcCccccEEEEecc-cccccccceeecCc-chhhcCcccEEEEecCCCCCCCCCc-C-CccCCcEEECcCccc
Confidence            455567888888888888655 321      1 222 24444 3588888888877777765 3 467888888888877


Q ss_pred             CccChhhhCCCCCCCEEEccCCC-CCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCC-ccccCChh
Q psy8029         163 AYMDPEIFKNLTSLRILNLDHNQ-LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN-RFQMFPKD  240 (693)
Q Consensus       163 ~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~  240 (693)
                      ..++.. +..+++|+.|+|+++. +..++.  ++.+++|++|++++|......+..+..+++|+.|++++| .+..+|..
T Consensus       624 ~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~  700 (1153)
T PLN03210        624 EKLWDG-VHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG  700 (1153)
T ss_pred             cccccc-cccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence            766543 5677888888887764 444432  667788888888776533323334677778888888775 35566654


Q ss_pred             hhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCC------CCCcCCh
Q psy8029         241 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHK------KLTSLPS  314 (693)
Q Consensus       241 ~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~------~l~~l~~  314 (693)
                      .  ++++|+.|++++|.. ...+|.    ...+|+.|++++|.+..+|...  .+++|+.|.+.++.      .+..+++
T Consensus       701 i--~l~sL~~L~Lsgc~~-L~~~p~----~~~nL~~L~L~~n~i~~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~  771 (1153)
T PLN03210        701 I--NLKSLYRLNLSGCSR-LKSFPD----ISTNISWLDLDETAIEEFPSNL--RLENLDELILCEMKSEKLWERVQPLTP  771 (1153)
T ss_pred             C--CCCCCCEEeCCCCCC-cccccc----ccCCcCeeecCCCccccccccc--cccccccccccccchhhccccccccch
Confidence            2  567777777777752 223332    2346777777777777766543  45666666666541      1111222


Q ss_pred             hhhcCCCCCcEEEccCCC-CCCCChhhhccCccCceEeccCC-cCccccCccCCCCCCeEeCCCCccccccccccCCCCC
Q psy8029         315 TLFRDCKKLVKLELQRNK-LKYLPENLFESLKELYTLNLKNN-QLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSS  392 (693)
Q Consensus       315 ~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~Ls~n-~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  392 (693)
                      ..+..+++|++|++++|. +..+|.. +..+++|+.|++++| .+..+|....+++|+.|++++|..-...+.   ...+
T Consensus       772 ~~~~~~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~---~~~n  847 (1153)
T PLN03210        772 LMTMLSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD---ISTN  847 (1153)
T ss_pred             hhhhccccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc---cccc
Confidence            222334567777777663 3345543 566777777777665 355565555566666666666543222221   1245


Q ss_pred             CcEEECCCCcCcccccccCCCCccCCCCCcEEECCCC-CCCcCChhHHhcCCCCcEEECCCC
Q psy8029         393 LNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYN-RISSLFDDWISSMTSLKELDLRHN  453 (693)
Q Consensus       393 L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N  453 (693)
                      |+.|++++|.++..     +..+..+++|+.|++++| .+..++. .+..+++|+.+++++|
T Consensus       848 L~~L~Ls~n~i~~i-----P~si~~l~~L~~L~L~~C~~L~~l~~-~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        848 ISDLNLSRTGIEEV-----PWWIEKFSNLSFLDMNGCNNLQRVSL-NISKLKHLETVDFSDC  903 (1153)
T ss_pred             cCEeECCCCCCccC-----hHHHhcCCCCCEEECCCCCCcCccCc-ccccccCCCeeecCCC
Confidence            66666666666533     344555666666666664 4444333 2455566666666655

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=6.1e-21  Score=211.22  Aligned_cols=261  Identities=27%  Similarity=0.315  Sum_probs=149.5

Q ss_pred             CcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCC
Q psy8029         152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANS  231 (693)
Q Consensus       152 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~  231 (693)
                      -..|+++.+.++.+++.. .  .+|+.|++++|+++.++.    ..++|++|++++|+++.++..    .++|+.|++++
T Consensus       203 ~~~LdLs~~~LtsLP~~l-~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~  271 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCL-P--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL----PPGLLELSIFS  271 (788)
T ss_pred             CcEEEcCCCCCCcCCcch-h--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc----ccccceeeccC
Confidence            344555555555544322 1  245555555555555432    135555555655555555431    24555666666


Q ss_pred             CccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCc
Q psy8029         232 NRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTS  311 (693)
Q Consensus       232 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~  311 (693)
                      |.++.++..    ...|+.|++++|+  +..+|..    .++|+.|++++|.+..+|..    ..+|+.|++++| .++.
T Consensus       272 N~L~~Lp~l----p~~L~~L~Ls~N~--Lt~LP~~----p~~L~~LdLS~N~L~~Lp~l----p~~L~~L~Ls~N-~L~~  336 (788)
T PRK15387        272 NPLTHLPAL----PSGLCKLWIFGNQ--LTSLPVL----PPGLQELSVSDNQLASLPAL----PSELCKLWAYNN-QLTS  336 (788)
T ss_pred             Cchhhhhhc----hhhcCEEECcCCc--ccccccc----ccccceeECCCCccccCCCC----cccccccccccC-cccc
Confidence            655554431    2445556666665  3344431    34566666666666665531    234566666666 6666


Q ss_pred             CChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCC
Q psy8029         312 LPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLS  391 (693)
Q Consensus       312 l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  391 (693)
                      +|..    ..+|++|++++|+++.+|..    ..+|+.|++++|+++.+|..  ..+|+.|++++|.+++++..    .+
T Consensus       337 LP~l----p~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l----~s  402 (788)
T PRK15387        337 LPTL----PSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVL----PS  402 (788)
T ss_pred             cccc----ccccceEecCCCccCCCCCC----CcccceehhhccccccCccc--ccccceEEecCCcccCCCCc----cc
Confidence            6531    24677777777777766642    34566677777777766643  34677777777777765431    24


Q ss_pred             CCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCc
Q psy8029         392 SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQ  461 (693)
Q Consensus       392 ~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  461 (693)
                      +|+.|++++|.++..     +.   ...+|+.|++++|+++.++ ..+..+++|+.|+|++|+|++..+.
T Consensus       403 ~L~~LdLS~N~LssI-----P~---l~~~L~~L~Ls~NqLt~LP-~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        403 ELKELMVSGNRLTSL-----PM---LPSGLLSLSVYRNQLTRLP-ESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             CCCEEEccCCcCCCC-----Cc---chhhhhhhhhccCcccccC-hHHhhccCCCeEECCCCCCCchHHH
Confidence            677777777777643     11   1245677777777777654 3466777777777777777765444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=6.2e-21  Score=211.12  Aligned_cols=257  Identities=26%  Similarity=0.285  Sum_probs=138.3

Q ss_pred             cccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEc
Q psy8029         102 FVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNL  181 (693)
Q Consensus       102 ~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  181 (693)
                      .-..|+++.+ +++.+|+...   ++|+.|++.+|+++.+|..    .++|++|++++|.++.++.    ..++|+.|++
T Consensus       202 ~~~~LdLs~~-~LtsLP~~l~---~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N~LtsLP~----lp~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGES-GLTTLPDCLP---AHITTLVIPDNNLTSLPAL----PPELRTLEVSGNQLTSLPV----LPPGLLELSI  269 (788)
T ss_pred             CCcEEEcCCC-CCCcCCcchh---cCCCEEEccCCcCCCCCCC----CCCCcEEEecCCccCcccC----cccccceeec
Confidence            4556777777 7777776432   3677777777777776642    4677777777777776643    1356777777


Q ss_pred             cCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCccc
Q psy8029         182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLK  261 (693)
Q Consensus       182 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  261 (693)
                      ++|.++.++.    ...+|+.|++++|+++.++.    ..++|+.|++++|.++.++..    ...|+.|++++|.  +.
T Consensus       270 s~N~L~~Lp~----lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~l----p~~L~~L~Ls~N~--L~  335 (788)
T PRK15387        270 FSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPAL----PSELCKLWAYNNQ--LT  335 (788)
T ss_pred             cCCchhhhhh----chhhcCEEECcCCccccccc----cccccceeECCCCccccCCCC----cccccccccccCc--cc
Confidence            7777765543    12456677777777776654    135677777777776665531    2345566666665  33


Q ss_pred             ccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhh
Q psy8029         262 ELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLF  341 (693)
Q Consensus       262 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  341 (693)
                      .+|..    ..+|+.|++++|+++.+|..    ..+|+.|++++| .+..+|..    ..+|+.|++++|.++.+|..  
T Consensus       336 ~LP~l----p~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N-~L~~LP~l----~~~L~~LdLs~N~Lt~LP~l--  400 (788)
T PRK15387        336 SLPTL----PSGLQELSVSDNQLASLPTL----PSELYKLWAYNN-RLTSLPAL----PSGLKELIVSGNRLTSLPVL--  400 (788)
T ss_pred             ccccc----ccccceEecCCCccCCCCCC----Ccccceehhhcc-ccccCccc----ccccceEEecCCcccCCCCc--
Confidence            44431    13455566666555555431    234455555555 44444431    23455555555555444431  


Q ss_pred             ccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCc
Q psy8029         342 ESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT  404 (693)
Q Consensus       342 ~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  404 (693)
                        .++|+.|++++|+++.+|..  +.+|+.|++++|+++.++ ..+..++.|+.|++++|+++
T Consensus       401 --~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt~LP-~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        401 --PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLP-ESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             --ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCcccccC-hHHhhccCCCeEECCCCCCC
Confidence              23444444444444444432  223444444444444332 23333444444444444443

>PLN03210 Resistant to P

Probab=99.86  E-value=1.2e-19  Score=216.63  Aligned_cols=334  Identities=25%  Similarity=0.329  Sum_probs=253.1

Q ss_pred             ccccccCCCCCCcEEEeeCCccc-------ccCcccCCCC-CCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCC
Q psy8029         117 LHKDIFKGTPQLESLNLRGNSIT-------ELYSGVFQYV-PKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN  188 (693)
Q Consensus       117 ~~~~~~~~l~~L~~L~L~~n~i~-------~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  188 (693)
                      +...+|.++++|+.|.+..+...       .+|.+ |..+ .+|+.|.+.++.+..++.. | ...+|++|++.++++..
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s~l~~  625 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGSKLEK  625 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcc-hhhcCcccEEEEecCCCCCCCCCc-C-CccCCcEEECcCccccc
Confidence            56677999999999999766422       24444 4444 5799999999998888765 3 56899999999999987


Q ss_pred             CChhhcCCCCCCcEEECcCCC-CCcCCCCcCCCCCCCcEEEcCCCc-cccCChhhhhcccCceEEEEecCCCcccccCcc
Q psy8029         189 LTRAIFNNVPNLRSLDISGNN-ISILPSGVFSDLRKLQTFYANSNR-FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSG  266 (693)
Q Consensus       189 ~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~  266 (693)
                      +... +..+++|+.|+|+++. +..++.  +..+++|+.|++++|. +..+|.. +..+++|+.|++++|.. +..+|..
T Consensus       626 L~~~-~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~-L~~Lp~~  700 (1153)
T PLN03210        626 LWDG-VHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCEN-LEILPTG  700 (1153)
T ss_pred             cccc-cccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCC-cCccCCc
Confidence            7554 5789999999999875 556654  7789999999999976 4456554 78899999999998753 4577765


Q ss_pred             ccCCCCCccEEEcCCCC-CcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCC-------CCCh
Q psy8029         267 LFANLPLLNTVILGESS-IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK-------YLPE  338 (693)
Q Consensus       267 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~-------~~~~  338 (693)
                      .  ++++|+.|++++|. +..+|.    ...+|+.|++++| .++.+|...  .+++|++|++.++...       .++.
T Consensus       701 i--~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n-~i~~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~  771 (1153)
T PLN03210        701 I--NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDET-AIEEFPSNL--RLENLDELILCEMKSEKLWERVQPLTP  771 (1153)
T ss_pred             C--CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCC-ccccccccc--cccccccccccccchhhccccccccch
Confidence            3  78899999999985 344442    2468999999999 788888753  6788999998875432       2222


Q ss_pred             hhhccCccCceEeccCCcC-ccccCc-cCCCCCCeEeCCCCc-cccccccccCCCCCCcEEECCCCcCcccccccCCCCc
Q psy8029         339 NLFESLKELYTLNLKNNQL-ENITSL-VGLSGLNSLDLSWNQ-LEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPL  415 (693)
Q Consensus       339 ~~~~~~~~L~~L~Ls~n~l-~~l~~~-~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  415 (693)
                      ..+..+++|+.|++++|.. ..+|.. ..+++|+.|++++|. +..++ ... ++++|+.|++++|.....    .+   
T Consensus       772 ~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP-~~~-~L~sL~~L~Ls~c~~L~~----~p---  842 (1153)
T PLN03210        772 LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP-TGI-NLESLESLDLSGCSRLRT----FP---  842 (1153)
T ss_pred             hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC-CCC-CccccCEEECCCCCcccc----cc---
Confidence            2344567899999999864 447765 889999999999975 44443 333 689999999999754321    11   


Q ss_pred             cCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCC-CCCccCCCcccccCCCccEEECCCCC
Q psy8029         416 KQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRH-NNFSFIPDQLDSIVSNKLTLDLSFNQ  478 (693)
Q Consensus       416 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~  478 (693)
                      ...++|+.|+|++|.++.++ .++..+++|+.|++++ +++..++.. ...++.|+.+++++|.
T Consensus       843 ~~~~nL~~L~Ls~n~i~~iP-~si~~l~~L~~L~L~~C~~L~~l~~~-~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        843 DISTNISDLNLSRTGIEEVP-WWIEKFSNLSFLDMNGCNNLQRVSLN-ISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ccccccCEeECCCCCCccCh-HHHhcCCCCCEEECCCCCCcCccCcc-cccccCCCeeecCCCc
Confidence            22468999999999999864 5689999999999998 567776654 5678889999998883

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=9.5e-19  Score=195.28  Aligned_cols=245  Identities=23%  Similarity=0.349  Sum_probs=167.1

Q ss_pred             cccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEc
Q psy8029         102 FVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNL  181 (693)
Q Consensus       102 ~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  181 (693)
                      +.+.|+++++ +++.+|...   .+.|+.|++++|.++.+|...+   .+|++|++++|.++.++...   ..+|+.|++
T Consensus       179 ~~~~L~L~~~-~LtsLP~~I---p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKIL-GLTTIPACI---PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATL---PDTIQEMEL  248 (754)
T ss_pred             CceEEEeCCC-CcCcCCccc---ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhh---hccccEEEC
Confidence            4567888877 777777543   2467888888888877776543   47888888888877775432   246788888


Q ss_pred             cCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCccc
Q psy8029         182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLK  261 (693)
Q Consensus       182 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  261 (693)
                      ++|++..++... .  .+|+.|++++|+++.++...   .++|+.|++++|.++.++...   .++|+.|++++|.  +.
T Consensus       249 s~N~L~~LP~~l-~--s~L~~L~Ls~N~L~~LP~~l---~~sL~~L~Ls~N~Lt~LP~~l---p~sL~~L~Ls~N~--Lt  317 (754)
T PRK15370        249 SINRITELPERL-P--SALQSLDLFHNKISCLPENL---PEELRYLSVYDNSIRTLPAHL---PSGITHLNVQSNS--LT  317 (754)
T ss_pred             cCCccCcCChhH-h--CCCCEEECcCCccCcccccc---CCCCcEEECCCCccccCcccc---hhhHHHHHhcCCc--cc
Confidence            888887765542 2  46788888888888776543   247888888888887776542   2467777777777  44


Q ss_pred             ccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhh
Q psy8029         262 ELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLF  341 (693)
Q Consensus       262 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  341 (693)
                      .+|...   .++|+.|++++|.++.+|..+   .++|+.|++++| .+..+|..+   .++|++|++++|.++.+|....
T Consensus       318 ~LP~~l---~~sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N-~L~~LP~~l---p~~L~~LdLs~N~Lt~LP~~l~  387 (754)
T PRK15370        318 ALPETL---PPGLKTLEAGENALTSLPASL---PPELQVLDVSKN-QITVLPETL---PPTITTLDVSRNALTNLPENLP  387 (754)
T ss_pred             cCCccc---cccceeccccCCccccCChhh---cCcccEEECCCC-CCCcCChhh---cCCcCEEECCCCcCCCCCHhHH
Confidence            555432   256777788887777776543   257778888877 677777643   3577888888888777776542


Q ss_pred             ccCccCceEeccCCcCccccCc-----cCCCCCCeEeCCCCccc
Q psy8029         342 ESLKELYTLNLKNNQLENITSL-----VGLSGLNSLDLSWNQLE  380 (693)
Q Consensus       342 ~~~~~L~~L~Ls~n~l~~l~~~-----~~l~~L~~L~Ls~n~l~  380 (693)
                         ..|+.|++++|+++.+|..     ...+.+..|++.+|.++
T Consensus       388 ---~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        388 ---AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             ---HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence               3577777777777776643     33456667777777665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=2.8e-18  Score=191.52  Aligned_cols=248  Identities=26%  Similarity=0.343  Sum_probs=129.4

Q ss_pred             CCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEE
Q psy8029         174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKI  253 (693)
Q Consensus       174 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  253 (693)
                      .+...|++++++++.++...   .+.|+.|++++|.++.++...+   ++|+.|++++|.++.+|...   ...|+.|++
T Consensus       178 ~~~~~L~L~~~~LtsLP~~I---p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACI---PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATL---PDTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcCcCCccc---ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhh---hccccEEEC
Confidence            34567777777776665432   2456777777777776665432   46777777777776666542   235666666


Q ss_pred             ecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCC
Q psy8029         254 SYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKL  333 (693)
Q Consensus       254 ~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l  333 (693)
                      ++|.  +..+|....   .+|+.|++++|+++.+|..+.   .+|+.|++++| .++.+|..+   .++|+.|++++|.+
T Consensus       249 s~N~--L~~LP~~l~---s~L~~L~Ls~N~L~~LP~~l~---~sL~~L~Ls~N-~Lt~LP~~l---p~sL~~L~Ls~N~L  316 (754)
T PRK15370        249 SINR--ITELPERLP---SALQSLDLFHNKISCLPENLP---EELRYLSVYDN-SIRTLPAHL---PSGITHLNVQSNSL  316 (754)
T ss_pred             cCCc--cCcCChhHh---CCCCEEECcCCccCccccccC---CCCcEEECCCC-ccccCcccc---hhhHHHHHhcCCcc
Confidence            6666  445555422   356666666666665554332   35666666665 555555432   13455566666655


Q ss_pred             CCCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCC
Q psy8029         334 KYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYS  413 (693)
Q Consensus       334 ~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  413 (693)
                      +.+|...   .++|+.|++++|.++.+|.. -+++|+.|++++|+++.++. .+  .++|+.|++++|.++..     +.
T Consensus       317 t~LP~~l---~~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~L~~LP~-~l--p~~L~~LdLs~N~Lt~L-----P~  384 (754)
T PRK15370        317 TALPETL---PPGLKTLEAGENALTSLPAS-LPPELQVLDVSKNQITVLPE-TL--PPTITTLDVSRNALTNL-----PE  384 (754)
T ss_pred             ccCCccc---cccceeccccCCccccCChh-hcCcccEEECCCCCCCcCCh-hh--cCCcCEEECCCCcCCCC-----CH
Confidence            5555432   24555555555555555432 12455555555555554322 12  13455555555555432     11


Q ss_pred             CccCCCCCcEEECCCCCCCcCCh---hHHhcCCCCcEEECCCCCCc
Q psy8029         414 PLKQCVNLETINLSYNRISSLFD---DWISSMTSLKELDLRHNNFS  456 (693)
Q Consensus       414 ~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~  456 (693)
                      .+  ...|+.|++++|+++.++.   ..+..++.+..|++.+|.++
T Consensus       385 ~l--~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        385 NL--PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hH--HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            11  1245555555555554321   12223344555555555544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=9.5e-18  Score=174.22  Aligned_cols=216  Identities=19%  Similarity=0.169  Sum_probs=129.9

Q ss_pred             ccCCCCccEEEecCCCCCCcCChhhhcCC---CCCcEEEccCCCCCCCCh----hhhccC-ccCceEeccCCcCcc----
Q psy8029         292 FWNSTNITNIVLTGHKKLTSLPSTLFRDC---KKLVKLELQRNKLKYLPE----NLFESL-KELYTLNLKNNQLEN----  359 (693)
Q Consensus       292 ~~~~~~L~~L~l~~n~~l~~l~~~~~~~~---~~L~~L~l~~n~l~~~~~----~~~~~~-~~L~~L~Ls~n~l~~----  359 (693)
                      +..+++|+.|++++| .+.......|..+   ++|++|++++|.++....    ..+..+ ++|+.|++++|.++.    
T Consensus        77 l~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  155 (319)
T cd00116          77 LTKGCGLQELDLSDN-ALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE  155 (319)
T ss_pred             HHhcCceeEEEccCC-CCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence            334555666666555 3332222222223   337777777776652111    123344 677777777777763    


Q ss_pred             -ccCc-cCCCCCCeEeCCCCcccccc----ccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCc
Q psy8029         360 -ITSL-VGLSGLNSLDLSWNQLEQIN----LIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISS  433 (693)
Q Consensus       360 -l~~~-~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  433 (693)
                       +... ..+++|++|++++|.+++..    ...+..+++|+.|++++|.++..........+..+++|++|++++|.+++
T Consensus       156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence             1111 45567888888888777422    12344556888888888887644322223445677889999999998886


Q ss_pred             CChhHHh-c----CCCCcEEECCCCCCccCCC----cccccCCCccEEECCCCCCceeeccchhhhcccCCCCCcccccc
Q psy8029         434 LFDDWIS-S----MTSLKELDLRHNNFSFIPD----QLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVA  504 (693)
Q Consensus       434 ~~~~~~~-~----l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~  504 (693)
                      .....+. .    .+.|+.|++++|.++....    ..+..+++|+.+++++|.++..+...+......         ..
T Consensus       236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~---------~~  306 (319)
T cd00116         236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLE---------PG  306 (319)
T ss_pred             HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhh---------cC
Confidence            4433333 2    3789999999998873211    223455789999999999987655544432211         00


Q ss_pred             ccCcEEEcCCCcc
Q psy8029         505 RSANIVILNDNPI  517 (693)
Q Consensus       505 ~~l~~l~l~~Np~  517 (693)
                      ..++++++.+|||
T Consensus       307 ~~~~~~~~~~~~~  319 (319)
T cd00116         307 NELESLWVKDDSF  319 (319)
T ss_pred             CchhhcccCCCCC
Confidence            3578899999886

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.62  E-value=1.2e-16  Score=165.83  Aligned_cols=58  Identities=24%  Similarity=0.292  Sum_probs=33.2

Q ss_pred             EEEcCCCCCC-ccChhhhCCCCCCCEEEccCCCCCCC----ChhhcCCCCCCcEEECcCCCCC
Q psy8029         154 VLDLGSNDVA-YMDPEIFKNLTSLRILNLDHNQLINL----TRAIFNNVPNLRSLDISGNNIS  211 (693)
Q Consensus       154 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~  211 (693)
                      .|+|..+.++ .-....|..+.+|+.|+++++.++..    ....+...+.+++++++++.+.
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~   64 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG   64 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC
Confidence            3566666555 22334455666677777777776532    1223445566777777666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617|consensus

Probab=99.55  E-value=1.1e-16  Score=138.74  Aligned_cols=181  Identities=24%  Similarity=0.357  Sum_probs=127.2

Q ss_pred             CCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc-cCCCCCCeEeCCCCccccccccccCCCCCCcEEE
Q psy8029         319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL-VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVD  397 (693)
Q Consensus       319 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  397 (693)
                      .+.+++.|.+++|+++.+|+.. ..+.+|+.|++++|+|..+|.. +.+++|+.|+++-|++... |..|+.++.|+.||
T Consensus        31 ~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~l-prgfgs~p~levld  108 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNIL-PRGFGSFPALEVLD  108 (264)
T ss_pred             chhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcC-ccccCCCchhhhhh
Confidence            3455666667777777666654 5666777777777777776665 6677777777777666543 44677778888888


Q ss_pred             CCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCC
Q psy8029         398 LSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFN  477 (693)
Q Consensus       398 L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  477 (693)
                      +..|.+....   .+..|..++.|+.|+|++|.+.-++++ ++.+++|+.|.++.|.+-++|.+ ++.+..|++|++.+|
T Consensus       109 ltynnl~e~~---lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  109 LTYNNLNENS---LPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGN  183 (264)
T ss_pred             cccccccccc---CCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccc
Confidence            8887776543   466677778888888888888877776 68888888888888888887766 567778888888888


Q ss_pred             CCceeeccchhhhcccCCCCCccccccccCcEEEcCCCccc
Q psy8029         478 QIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIA  518 (693)
Q Consensus       478 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~  518 (693)
                      +++.++++.- .+...           .+-+.+.+.+|||.
T Consensus       184 rl~vlppel~-~l~l~-----------~~k~v~r~E~NPwv  212 (264)
T KOG0617|consen  184 RLTVLPPELA-NLDLV-----------GNKQVMRMEENPWV  212 (264)
T ss_pred             eeeecChhhh-hhhhh-----------hhHHHHhhhhCCCC
Confidence            8887765421 11110           11235678889986

>KOG0617|consensus

Probab=99.52  E-value=2.2e-16  Score=136.89  Aligned_cols=162  Identities=28%  Similarity=0.468  Sum_probs=93.4

Q ss_pred             CCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCC
Q psy8029          97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSL  176 (693)
Q Consensus        97 ~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  176 (693)
                      +.++.+.+.|.||+| +++.+++. ++.+.+|+.|++++|+|+++|.. ++.+++|+.|+++-|++.-. |..|+.++.|
T Consensus        29 Lf~~s~ITrLtLSHN-Kl~~vppn-ia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~l-prgfgs~p~l  104 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHN-KLTVVPPN-IAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNIL-PRGFGSFPAL  104 (264)
T ss_pred             ccchhhhhhhhcccC-ceeecCCc-HHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcC-ccccCCCchh
Confidence            344555556666666 66666655 45566666666666666666554 35566666666665555433 3335666666


Q ss_pred             CEEEccCCCCCC-CChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEec
Q psy8029         177 RILNLDHNQLIN-LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISY  255 (693)
Q Consensus       177 ~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  255 (693)
                      +.|||.+|++.+ ..+..|..++.|+.|.|+.|.+.-+|++ .+++++|+.|.+.+|.+-++|.. ++.+..|++|.+.+
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqg  182 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQG  182 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhccc
Confidence            666666666552 2334445556666666666666655554 35566666666666666666555 35566666666666


Q ss_pred             CCCcccccCcc
Q psy8029         256 HKDSLKELPSG  266 (693)
Q Consensus       256 n~~~~~~i~~~  266 (693)
                      |+  .+.+|+.
T Consensus       183 nr--l~vlppe  191 (264)
T KOG0617|consen  183 NR--LTVLPPE  191 (264)
T ss_pred             ce--eeecChh
Confidence            66  4455543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.31  E-value=1.3e-12  Score=119.27  Aligned_cols=128  Identities=29%  Similarity=0.425  Sum_probs=38.6

Q ss_pred             CCCCCCcEEEeeCCcccccCcccCC-CCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCc
Q psy8029         123 KGTPQLESLNLRGNSITELYSGVFQ-YVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLR  201 (693)
Q Consensus       123 ~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  201 (693)
                      .+..++++|+|.+|.|+.+..  ++ .+.+|++|++++|.|+.+..  +..+++|++|++++|+|+.+.+.....+++|+
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ   91 (175)
T ss_dssp             --------------------S----TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred             ccccccccccccccccccccc--hhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence            344455666666666655532  22 35566666666666655532  45566666666666666655443223456666


Q ss_pred             EEECcCCCCCcCCC-CcCCCCCCCcEEEcCCCccccCC---hhhhhcccCceEEEEe
Q psy8029         202 SLDISGNNISILPS-GVFSDLRKLQTFYANSNRFQMFP---KDLFAEMKYLQVIKIS  254 (693)
Q Consensus       202 ~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~~~L~~L~l~  254 (693)
                      +|++++|+|..+.. ..+..+++|+.|++.+|+++..+   ..++..+|+|+.||-.
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            66666666654433 23455666777777777665332   2344556677766543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.29  E-value=2.2e-12  Score=117.91  Aligned_cols=128  Identities=30%  Similarity=0.355  Sum_probs=40.3

Q ss_pred             cCCCCCcEEEccCCCCCCCChhhhc-cCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEE
Q psy8029         318 RDCKKLVKLELQRNKLKYLPENLFE-SLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTV  396 (693)
Q Consensus       318 ~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  396 (693)
                      .++.++++|++.+|.|+.+..  ++ .+.+|+.|++++|.|+.++....++.|++|++++|.|+.+.......+++|+.|
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             --------------------S----TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             ccccccccccccccccccccc--hhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            345566777777777766643  22 456677777777777777666667777777777777776654322346677777


Q ss_pred             ECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCCh---hHHhcCCCCcEEEC
Q psy8029         397 DLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD---DWISSMTSLKELDL  450 (693)
Q Consensus       397 ~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L  450 (693)
                      ++++|+|....   ....++.+++|+.|+|.+|.++....   ..+..+|+|+.||-
T Consensus        94 ~L~~N~I~~l~---~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   94 YLSNNKISDLN---ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             E-TTS---SCC---CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             ECcCCcCCChH---HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            77777766443   23445556666666666666554321   12345555555543

>KOG1909|consensus

Probab=99.16  E-value=3.1e-12  Score=124.16  Aligned_cols=135  Identities=21%  Similarity=0.130  Sum_probs=62.8

Q ss_pred             ccCceEeccCCcCccccCc------cCCCCCCeEeCCCCccccc----cccccCCCCCCcEEECCCCcCcccccccCCCC
Q psy8029         345 KELYTLNLKNNQLENITSL------VGLSGLNSLDLSWNQLEQI----NLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSP  414 (693)
Q Consensus       345 ~~L~~L~Ls~n~l~~l~~~------~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  414 (693)
                      +.|+++...+|++..-+..      +..+.|+.+.++.|.|..-    ...+|..+++|+.|||.+|-++..+......+
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            3445555555544432211      3334555555555544321    22344455566666666665554433333344


Q ss_pred             ccCCCCCcEEECCCCCCCcCChhHHh-----cCCCCcEEECCCCCCcc----CCCcccccCCCccEEECCCCCC
Q psy8029         415 LKQCVNLETINLSYNRISSLFDDWIS-----SMTSLKELDLRHNNFSF----IPDQLDSIVSNKLTLDLSFNQI  479 (693)
Q Consensus       415 ~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l  479 (693)
                      +..++.|+.|++++|.+..-....|.     ..|+|++|.+.+|.|+.    .....+...+.|..|+|++|++
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            55555566666666655543332222     34555555555555542    1111122344455555555555

>KOG1259|consensus

Probab=99.14  E-value=9e-12  Score=118.01  Aligned_cols=133  Identities=27%  Similarity=0.340  Sum_probs=95.2

Q ss_pred             CCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECC
Q psy8029         320 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLS  399 (693)
Q Consensus       320 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  399 (693)
                      +..|+++|+++|.|+.+..+. .-.++++.|++++|.|..+.....+++|++||||+|.++.+.. .-..+.++++|.|+
T Consensus       283 Wq~LtelDLS~N~I~~iDESv-KL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La  360 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESV-KLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLA  360 (490)
T ss_pred             Hhhhhhccccccchhhhhhhh-hhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhh-hHhhhcCEeeeehh
Confidence            346788888888888777654 5678888888888888887777778888888888888776543 22346677888888


Q ss_pred             CCcCcccccccCCCCccCCCCCcEEECCCCCCCcCCh-hHHhcCCCCcEEECCCCCCccCCC
Q psy8029         400 HNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD-DWISSMTSLKELDLRHNNFSFIPD  460 (693)
Q Consensus       400 ~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~  460 (693)
                      +|.|..      ...+..+-+|..||+++|+|..+.. ..++++|.|+.+.|.+|.+..++.
T Consensus       361 ~N~iE~------LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  361 QNKIET------LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhhHhh------hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            887773      4455666777778888887765432 235677777777777777776654

>KOG1909|consensus

Probab=99.12  E-value=7.2e-12  Score=121.65  Aligned_cols=137  Identities=23%  Similarity=0.247  Sum_probs=84.8

Q ss_pred             CCCCcEEEccCCCCCCCCh----hhhccCccCceEeccCCcCcc--cc----CccCCCCCCeEeCCCCcccccc----cc
Q psy8029         320 CKKLVKLELQRNKLKYLPE----NLFESLKELYTLNLKNNQLEN--IT----SLVGLSGLNSLDLSWNQLEQIN----LI  385 (693)
Q Consensus       320 ~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~Ls~n~l~~--l~----~~~~l~~L~~L~Ls~n~l~~~~----~~  385 (693)
                      -+.|+++....|.+...+.    ..|...+.|+.+.++.|.|..  +.    .+..+++|+.|||.+|.++...    ..
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            3556666666666654432    335556667777777776654  21    1156777777777777766432    23


Q ss_pred             ccCCCCCCcEEECCCCcCcccccccCCCCc-cCCCCCcEEECCCCCCCcC----ChhHHhcCCCCcEEECCCCCCc
Q psy8029         386 AFDGLSSLNTVDLSHNLLTFDEYQYGYSPL-KQCVNLETINLSYNRISSL----FDDWISSMTSLKELDLRHNNFS  456 (693)
Q Consensus       386 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~  456 (693)
                      ++..+++|+.|++++|.+...+......++ ...|+|+.|.+.+|.|+.-    ....+...+.|..|+|++|++.
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            455567777888888777754321111111 3367888888888888742    2233456788999999999984

>KOG3207|consensus

Probab=99.10  E-value=1.3e-11  Score=123.20  Aligned_cols=207  Identities=20%  Similarity=0.174  Sum_probs=116.6

Q ss_pred             CCccEEEcCCCCCcccCc-ccccCCCCccEEEecCCCCCCcCC--hhhhcCCCCCcEEEccCCCCCCCC-hhhhccCccC
Q psy8029         272 PLLNTVILGESSIAELPS-DLFWNSTNITNIVLTGHKKLTSLP--STLFRDCKKLVKLELQRNKLKYLP-ENLFESLKEL  347 (693)
Q Consensus       272 ~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~l~~l~--~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L  347 (693)
                      .+|+++.+.++.+...+. .....|++++.|++++| -+....  ..+...+++|+.|+++.|.+.... ...-..+++|
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            344444444443333221 22234555555555555 333222  122345677777777777654221 1111245667


Q ss_pred             ceEeccCCcCcc--ccCc-cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEE
Q psy8029         348 YTLNLKNNQLEN--ITSL-VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI  424 (693)
Q Consensus       348 ~~L~Ls~n~l~~--l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L  424 (693)
                      +.|.++.|.++.  +... ..+|+|+.|+|.+|....+......-+..|+.|+|++|.+...+   .......++.|+.|
T Consensus       200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~---~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD---QGYKVGTLPGLNQL  276 (505)
T ss_pred             heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc---cccccccccchhhh
Confidence            777777777764  2212 66777777777777644444444445667777777777766543   12345567777777


Q ss_pred             ECCCCCCCcCC-hhH-----HhcCCCCcEEECCCCCCccCCC-cccccCCCccEEECCCCCCcee
Q psy8029         425 NLSYNRISSLF-DDW-----ISSMTSLKELDLRHNNFSFIPD-QLDSIVSNKLTLDLSFNQIAIV  482 (693)
Q Consensus       425 ~Ls~n~l~~~~-~~~-----~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~  482 (693)
                      +++.|.+..+. |+.     -...++|+.|++..|+|..+.. ..+..+++|+.|.+..|.++.-
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            77777776542 111     2356788888888888765432 2234556677777777777643

>KOG3207|consensus

Probab=99.05  E-value=1.6e-11  Score=122.48  Aligned_cols=65  Identities=29%  Similarity=0.368  Sum_probs=38.0

Q ss_pred             CCCCCCcEEEcCCCCCCccCh-hhhCCCCCCCEEEccCCCCCCCCh--hhcCCCCCCcEEECcCCCCC
Q psy8029         147 QYVPKLQVLDLGSNDVAYMDP-EIFKNLTSLRILNLDHNQLINLTR--AIFNNVPNLRSLDISGNNIS  211 (693)
Q Consensus       147 ~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~i~  211 (693)
                      +++.+|+.+.|.++.+..... .....|++++.|||+.|-+....+  .....+++|+.|+++.|.+.
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~  185 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS  185 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence            356667777776665554332 234566777777777766654332  33455666666666666554

>KOG1259|consensus

Probab=99.05  E-value=4.5e-11  Score=113.34  Aligned_cols=132  Identities=27%  Similarity=0.329  Sum_probs=107.5

Q ss_pred             ccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEE
Q psy8029         101 HFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILN  180 (693)
Q Consensus       101 ~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  180 (693)
                      ..|+++|||+| .|+.+... ..-.|.++.|++++|+|..+..  ++.+++|+.||||+|.++.+.- +-..+.+.+.|.
T Consensus       284 q~LtelDLS~N-~I~~iDES-vKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGN-LITQIDES-VKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLK  358 (490)
T ss_pred             hhhhhcccccc-chhhhhhh-hhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhh-hHhhhcCEeeee
Confidence            46889999999 99888765 5667899999999999988765  6789999999999998887643 235788899999


Q ss_pred             ccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCC-CcCCCCCCCcEEEcCCCccccCCh
Q psy8029         181 LDHNQLINLTRAIFNNVPNLRSLDISGNNISILPS-GVFSDLRKLQTFYANSNRFQMFPK  239 (693)
Q Consensus       181 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~  239 (693)
                      |++|.+..+..  +..+-+|..||+++|+|..+.. ..++++|.|+++.+.+|.+..++.
T Consensus       359 La~N~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  359 LAQNKIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhhhhHhhhhh--hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            99998876653  6777889999999999886543 347889999999999999887664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.03  E-value=3e-10  Score=121.50  Aligned_cols=175  Identities=33%  Similarity=0.448  Sum_probs=84.7

Q ss_pred             CccEEEecCCCCCCcCChhhhcCCC-CCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCcc-CCCCCCeEeC
Q psy8029         297 NITNIVLTGHKKLTSLPSTLFRDCK-KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-GLSGLNSLDL  374 (693)
Q Consensus       297 ~L~~L~l~~n~~l~~l~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~-~l~~L~~L~L  374 (693)
                      .+..+++.+| .+.++++.. .... +|++|++++|++..++.. ...+++|+.|++++|+++.++... ..+.|+.|++
T Consensus       117 ~l~~L~l~~n-~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         117 NLTSLDLDNN-NITDIPPLI-GLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             ceeEEecCCc-ccccCcccc-ccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence            3444444444 444444332 1221 455555555555444321 234555555555555555554442 4455555555


Q ss_pred             CCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCC
Q psy8029         375 SWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNN  454 (693)
Q Consensus       375 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  454 (693)
                      ++|.+..++... .....|++|.+++|.+..     ....+..+.++..+.+.+|++... +..+..+++++.|++++|+
T Consensus       194 s~N~i~~l~~~~-~~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         194 SGNKISDLPPEI-ELLSALEELDLSNNSIIE-----LLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             cCCccccCchhh-hhhhhhhhhhhcCCccee-----cchhhhhcccccccccCCceeeec-cchhccccccceecccccc
Confidence            555555444321 222335555555553221     234445555555555555555543 2334555556666666666


Q ss_pred             CccCCCcccccCCCccEEECCCCCCceee
Q psy8029         455 FSFIPDQLDSIVSNKLTLDLSFNQIAIVD  483 (693)
Q Consensus       455 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  483 (693)
                      ++.++.  +....+++.|++++|.+..+.
T Consensus       267 i~~i~~--~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         267 ISSISS--LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             cccccc--ccccCccCEEeccCccccccc
Confidence            665554  445555666666666655443

>KOG0531|consensus

Probab=99.00  E-value=4.2e-11  Score=128.13  Aligned_cols=242  Identities=26%  Similarity=0.371  Sum_probs=113.8

Q ss_pred             CCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEEC
Q psy8029         126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDI  205 (693)
Q Consensus       126 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  205 (693)
                      ..++.+++..|.+..+... +..+.+|+.|++.+|.|..+... +..+++|++|++++|+|+.+..  +..++.|+.|++
T Consensus        72 ~~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l  147 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNH-LSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL  147 (414)
T ss_pred             HhHHhhccchhhhhhhhcc-cccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccc--hhhccchhhhee
Confidence            3344444444444332111 23444555555555554444321 3445555555555555554443  334444555555


Q ss_pred             cCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCc
Q psy8029         206 SGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA  285 (693)
Q Consensus       206 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~  285 (693)
                      ++|.|+.+..  +..++.|+.+++++|.+..+.......+.+++.+++.+|.  +..+..  +..+..+..+++..|.++
T Consensus       148 ~~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~--i~~i~~--~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  148 SGNLISDISG--LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS--IREIEG--LDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             ccCcchhccC--CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc--hhcccc--hHHHHHHHHhhcccccce
Confidence            5555555443  3335555555555555554444102334455555555554  222211  122222222233333333


Q ss_pred             ccCcccccCCCCccEEEecCCCCCCcCChhhhcCCC--CCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc
Q psy8029         286 ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK--KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL  363 (693)
Q Consensus       286 ~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~  363 (693)
                      .+.                         ..  ..+.  +|+++++++|.+..++.. +..+..+..+++.+|++..+...
T Consensus       222 ~~~-------------------------~l--~~~~~~~L~~l~l~~n~i~~~~~~-~~~~~~l~~l~~~~n~~~~~~~~  273 (414)
T KOG0531|consen  222 KLE-------------------------GL--NELVMLHLRELYLSGNRISRSPEG-LENLKNLPVLDLSSNRISNLEGL  273 (414)
T ss_pred             ecc-------------------------Cc--ccchhHHHHHHhcccCcccccccc-ccccccccccchhhccccccccc
Confidence            221                         10  0111  255666666655554321 34566666666666666666655


Q ss_pred             cCCCCCCeEeCCCCcccccc---cc-ccCCCCCCcEEECCCCcCcc
Q psy8029         364 VGLSGLNSLDLSWNQLEQIN---LI-AFDGLSSLNTVDLSHNLLTF  405 (693)
Q Consensus       364 ~~l~~L~~L~Ls~n~l~~~~---~~-~~~~l~~L~~L~L~~n~l~~  405 (693)
                      ...+.+..+....+.+....   .. .....+.++...+..|.+..
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  274 ERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             cccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence            55566666666666655221   11 13345667777777776664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.98  E-value=6.4e-10  Score=118.93  Aligned_cols=179  Identities=32%  Similarity=0.441  Sum_probs=121.6

Q ss_pred             CCccEEEcCCCCCcccCcccccCC-CCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceE
Q psy8029         272 PLLNTVILGESSIAELPSDLFWNS-TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTL  350 (693)
Q Consensus       272 ~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  350 (693)
                      +.++.+++.++.++.+++.. ... .+|+.|++++| .+..++.. .+.+++|+.|++++|++++++... ...+.|+.|
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N-~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~-~~~~~L~~L  191 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDN-KIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLL-SNLSNLNNL  191 (394)
T ss_pred             cceeEEecCCcccccCcccc-ccchhhccccccccc-chhhhhhh-hhccccccccccCCchhhhhhhhh-hhhhhhhhe
Confidence            45555666666655555432 223 26666777666 66666433 256777777888877777777642 256777788


Q ss_pred             eccCCcCccccCc-cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCC
Q psy8029         351 NLKNNQLENITSL-VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYN  429 (693)
Q Consensus       351 ~Ls~n~l~~l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n  429 (693)
                      ++++|++..+|.. .....|++|.+++|.+.... ..+..+..+..+.+.+|++...     ...+..+++++.|++++|
T Consensus       192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~-~~~~~~~~l~~l~l~~n~~~~~-----~~~~~~l~~l~~L~~s~n  265 (394)
T COG4886         192 DLSGNKISDLPPEIELLSALEELDLSNNSIIELL-SSLSNLKNLSGLELSNNKLEDL-----PESIGNLSNLETLDLSNN  265 (394)
T ss_pred             eccCCccccCchhhhhhhhhhhhhhcCCcceecc-hhhhhcccccccccCCceeeec-----cchhccccccceeccccc
Confidence            8888888777776 35555888888887533332 2456677777777888877632     455667777888888888


Q ss_pred             CCCcCChhHHhcCCCCcEEECCCCCCccCCCcc
Q psy8029         430 RISSLFDDWISSMTSLKELDLRHNNFSFIPDQL  462 (693)
Q Consensus       430 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  462 (693)
                      .++.+..  ++...+++.|++++|.+...++..
T Consensus       266 ~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         266 QISSISS--LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             ccccccc--ccccCccCEEeccCccccccchhh
Confidence            8888766  678888888888888888766553

>KOG0531|consensus

Probab=98.92  E-value=1.5e-10  Score=123.97  Aligned_cols=218  Identities=24%  Similarity=0.339  Sum_probs=100.8

Q ss_pred             CCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEc
Q psy8029         150 PKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYA  229 (693)
Q Consensus       150 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  229 (693)
                      +.++.++...+.+...... ...+..++.+++..|.+..+.. .+..+.+|+.|++..|.|..+... +..+++|++|++
T Consensus        49 ~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~~~~-~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~l  125 (414)
T KOG0531|consen   49 SDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAKILN-HLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDL  125 (414)
T ss_pred             chhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhhhhc-ccccccceeeeeccccchhhcccc-hhhhhcchheec
Confidence            3444445544433322221 1344555555566666655222 245556666666666666655432 344555666666


Q ss_pred             CCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCC
Q psy8029         230 NSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL  309 (693)
Q Consensus       230 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l  309 (693)
                      ++|.|+.+..  +..++.|+.|++.+|.  +..+..  +..+..|+.+++++|.+..+...                   
T Consensus       126 s~N~I~~i~~--l~~l~~L~~L~l~~N~--i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~-------------------  180 (414)
T KOG0531|consen  126 SFNKITKLEG--LSTLTLLKELNLSGNL--ISDISG--LESLKSLKLLDLSYNRIVDIEND-------------------  180 (414)
T ss_pred             cccccccccc--hhhccchhhheeccCc--chhccC--CccchhhhcccCCcchhhhhhhh-------------------
Confidence            6665555443  2334445555555554  323322  22233344444444333333221                   


Q ss_pred             CcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCC--CCeEeCCCCcccccccccc
Q psy8029         310 TSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSG--LNSLDLSWNQLEQINLIAF  387 (693)
Q Consensus       310 ~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~--L~~L~Ls~n~l~~~~~~~~  387 (693)
                           . ...+.+++.+++.+|.+..+..  +..+..+..+++..|.++.+.....+..  |+.+++++|.+..+. ..+
T Consensus       181 -----~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~-~~~  251 (414)
T KOG0531|consen  181 -----E-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSP-EGL  251 (414)
T ss_pred             -----h-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccccc-ccc
Confidence                 1 1344555555555555554443  2233344444555555555444333332  555555555554432 123


Q ss_pred             CCCCCCcEEECCCCcCc
Q psy8029         388 DGLSSLNTVDLSHNLLT  404 (693)
Q Consensus       388 ~~l~~L~~L~L~~n~l~  404 (693)
                      ..+..+..|++.+|++.
T Consensus       252 ~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  252 ENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             cccccccccchhhcccc
Confidence            33444444555544444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=9.6e-10  Score=82.59  Aligned_cols=59  Identities=34%  Similarity=0.590  Sum_probs=30.2

Q ss_pred             cccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCC
Q psy8029         102 FVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSND  161 (693)
Q Consensus       102 ~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~  161 (693)
                      +|++|++++| +++.+++++|.++++|++|++++|.++.+++++|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4455555555 5555555555555555555555555555554455555555555555443

...

>KOG0532|consensus

Probab=98.92  E-value=4.4e-11  Score=123.06  Aligned_cols=175  Identities=27%  Similarity=0.372  Sum_probs=95.5

Q ss_pred             cccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEc
Q psy8029         102 FVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNL  181 (693)
Q Consensus       102 ~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  181 (693)
                      --...|++.| .+..++.. +..+..|+.+.|..|.+..++.. ..++..|..|+|+.|+++.++... ..| -|+.|-+
T Consensus        76 dt~~aDlsrN-R~~elp~~-~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~l-C~l-pLkvli~  150 (722)
T KOG0532|consen   76 DTVFADLSRN-RFSELPEE-ACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSNQLSHLPDGL-CDL-PLKVLIV  150 (722)
T ss_pred             chhhhhcccc-ccccCchH-HHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccchhhcCChhh-hcC-cceeEEE
Confidence            3344556666 55555544 34445555566666655555543 355566666666666655554432 333 2556666


Q ss_pred             cCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCccc
Q psy8029         182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLK  261 (693)
Q Consensus       182 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  261 (693)
                      ++|+++.++++ ++..+.|..||.+.|.+..+++. +..+.+|+.|.+..|.+..++....  .-.|..||++.|+  +.
T Consensus       151 sNNkl~~lp~~-ig~~~tl~~ld~s~nei~slpsq-l~~l~slr~l~vrRn~l~~lp~El~--~LpLi~lDfScNk--is  224 (722)
T KOG0532|consen  151 SNNKLTSLPEE-IGLLPTLAHLDVSKNEIQSLPSQ-LGYLTSLRDLNVRRNHLEDLPEELC--SLPLIRLDFSCNK--IS  224 (722)
T ss_pred             ecCccccCCcc-cccchhHHHhhhhhhhhhhchHH-hhhHHHHHHHHHhhhhhhhCCHHHh--CCceeeeecccCc--ee
Confidence            66666555544 34555666666666666555554 3455556666666666655555532  2345556666555  44


Q ss_pred             ccCccccCCCCCccEEEcCCCCCcccC
Q psy8029         262 ELPSGLFANLPLLNTVILGESSIAELP  288 (693)
Q Consensus       262 ~i~~~~~~~l~~L~~L~l~~n~l~~~~  288 (693)
                      .+|.. |..+..|++|.|.+|.+.+-|
T Consensus       225 ~iPv~-fr~m~~Lq~l~LenNPLqSPP  250 (722)
T KOG0532|consen  225 YLPVD-FRKMRHLQVLQLENNPLQSPP  250 (722)
T ss_pred             ecchh-hhhhhhheeeeeccCCCCCCh
Confidence            55554 555666666666666555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.91  E-value=7.9e-10  Score=83.05  Aligned_cols=61  Identities=43%  Similarity=0.756  Sum_probs=47.0

Q ss_pred             CCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCC
Q psy8029         126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL  186 (693)
Q Consensus       126 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  186 (693)
                      ++|++|++++|+++.+++.+|.++++|++|++++|.++.+++.+|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4677788888877777777777777888888887777777777777777777777777764

...

>KOG0532|consensus

Probab=98.86  E-value=1.2e-10  Score=119.95  Aligned_cols=204  Identities=26%  Similarity=0.314  Sum_probs=154.6

Q ss_pred             ccCccccC-CCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhh
Q psy8029         262 ELPSGLFA-NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENL  340 (693)
Q Consensus       262 ~i~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~  340 (693)
                      .+|.+.+. .+..-...+++.|++..+|..+ ..+..|+.+.+..| .+..+|..+ ..+..|+.+|++.|+++.+|..+
T Consensus        64 ~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~-~~f~~Le~liLy~n-~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~l  140 (722)
T KOG0532|consen   64 EFPRGAASYDLTDTVFADLSRNRFSELPEEA-CAFVSLESLILYHN-CIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGL  140 (722)
T ss_pred             cCCCccccccccchhhhhccccccccCchHH-HHHHHHHHHHHHhc-cceecchhh-hhhhHHHHhhhccchhhcCChhh
Confidence            44444333 3445567888899988888654 55667888888888 888888765 67888999999999999888876


Q ss_pred             hccCccCceEeccCCcCccccCc-cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCC
Q psy8029         341 FESLKELYTLNLKNNQLENITSL-VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCV  419 (693)
Q Consensus       341 ~~~~~~L~~L~Ls~n~l~~l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~  419 (693)
                      + .+ -|+.|-+++|+++.+|.. .....|..||.+.|.+..+.+ .++++.+|+.|.+..|++...     +..+. .-
T Consensus       141 C-~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slps-ql~~l~slr~l~vrRn~l~~l-----p~El~-~L  211 (722)
T KOG0532|consen  141 C-DL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPS-QLGYLTSLRDLNVRRNHLEDL-----PEELC-SL  211 (722)
T ss_pred             h-cC-cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchH-HhhhHHHHHHHHHhhhhhhhC-----CHHHh-CC
Confidence            4 34 488999999999998877 677788999999999888766 567788899999998888765     44444 44


Q ss_pred             CCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccc--cCCCccEEECCCCC
Q psy8029         420 NLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDS--IVSNKLTLDLSFNQ  478 (693)
Q Consensus       420 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~  478 (693)
                      .|..||+|.|+++.++.+ |..+..|++|-|.+|.+..-+.....  ...-.++|+..-++
T Consensus       212 pLi~lDfScNkis~iPv~-fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  212 PLIRLDFSCNKISYLPVD-FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             ceeeeecccCceeecchh-hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence            688999999999987655 78999999999999999887665321  12224677776664

>KOG4658|consensus

Probab=98.85  E-value=2.3e-09  Score=122.50  Aligned_cols=272  Identities=21%  Similarity=0.283  Sum_probs=116.5

Q ss_pred             cccEEEeecCCCCccCCCCccCCCcccccEEEccCCcC-cccccccccCCCCCCcEEEeeCC-cccccCcccCCCCCCCc
Q psy8029          76 TINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKE-ITGLHKDIFKGTPQLESLNLRGN-SITELYSGVFQYVPKLQ  153 (693)
Q Consensus        76 ~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~-i~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~  153 (693)
                      .++++.+.++  .+..+.  .-..++.|++|-+..|.. +..++...|..++.|++|||++| .+..+|.. .+.+.+|+
T Consensus       524 ~~rr~s~~~~--~~~~~~--~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~Lr  598 (889)
T KOG4658|consen  524 SVRRMSLMNN--KIEHIA--GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLR  598 (889)
T ss_pred             heeEEEEecc--chhhcc--CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-Hhhhhhhh
Confidence            3445555444  443333  112223455555555511 44455555555555555555544 22334443 24555555


Q ss_pred             EEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCC--cCCCCcCCCCCCCcEEEcCC
Q psy8029         154 VLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS--ILPSGVFSDLRKLQTFYANS  231 (693)
Q Consensus       154 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~l~~  231 (693)
                      +|+++++.+..+|.. +.++..|.+|++..+.-....+.....+++|++|.+......  ......+..+++|+.+....
T Consensus       599 yL~L~~t~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  599 YLDLSDTGISHLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             cccccCCCccccchH-HHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            555555555544333 455555555555554433333333444555555555443311  11111122333333333322


Q ss_pred             CccccCChhhhhcccCce----EEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccC------CCCccEE
Q psy8029         232 NRFQMFPKDLFAEMKYLQ----VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWN------STNITNI  301 (693)
Q Consensus       232 n~l~~~~~~~~~~~~~L~----~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------~~~L~~L  301 (693)
                      ... .+.. .+..+..|.    .+.+.++.  .... ...+..+.+|+.|.+.++.+.++....+..      .+++..+
T Consensus       678 ~s~-~~~e-~l~~~~~L~~~~~~l~~~~~~--~~~~-~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~  752 (889)
T KOG4658|consen  678 SSV-LLLE-DLLGMTRLRSLLQSLSIEGCS--KRTL-ISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKV  752 (889)
T ss_pred             chh-HhHh-hhhhhHHHHHHhHhhhhcccc--ccee-ecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHH
Confidence            211 0000 011122222    22222221  1111 122456677777777777665433222111      1233333


Q ss_pred             EecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccc
Q psy8029         302 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI  360 (693)
Q Consensus       302 ~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l  360 (693)
                      .+.++.....+....|  .++|+.|.+..+...+-+......+..++.+.+..+.+...
T Consensus       753 ~~~~~~~~r~l~~~~f--~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l  809 (889)
T KOG4658|consen  753 SILNCHMLRDLTWLLF--APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL  809 (889)
T ss_pred             Hhhccccccccchhhc--cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence            3344423333332222  56777777777755433332334555555555555544443

>KOG4658|consensus

Probab=98.77  E-value=1e-08  Score=117.28  Aligned_cols=128  Identities=25%  Similarity=0.372  Sum_probs=70.5

Q ss_pred             ccccEEEccCCcCcccccccccCCCCCCcEEEeeCCc--ccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCE
Q psy8029         101 HFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNS--ITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI  178 (693)
Q Consensus       101 ~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  178 (693)
                      ...+...+-+| .+..++..  ..++.|++|-+.+|.  +..++...|..++.|++|||++|.=-.-.|..++.+-+||+
T Consensus       523 ~~~rr~s~~~~-~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNN-KIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             hheeEEEEecc-chhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            44555555555 55554432  234456666666664  44555555666666666666655322223344566666666


Q ss_pred             EEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCC
Q psy8029         179 LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN  232 (693)
Q Consensus       179 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n  232 (693)
                      |+++++.+..++.. ++++..|.+|++..+.-....++....+++|++|.+...
T Consensus       600 L~L~~t~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  600 LDLSDTGISHLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccccCCCccccchH-HHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            66666666655443 466666666666655544333444445666666655543

>KOG1859|consensus

Probab=98.73  E-value=2.4e-10  Score=120.64  Aligned_cols=131  Identities=26%  Similarity=0.376  Sum_probs=84.1

Q ss_pred             CCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCC
Q psy8029         366 LSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSL  445 (693)
Q Consensus       366 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  445 (693)
                      ...|...+.++|.+..++. ++.-++.|+.|+|++|+++.      ...+..|+.|++|||++|.++.++.-...++. |
T Consensus       163 Wn~L~~a~fsyN~L~~mD~-SLqll~ale~LnLshNk~~~------v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L  234 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLVLMDE-SLQLLPALESLNLSHNKFTK------VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-L  234 (1096)
T ss_pred             hhhHhhhhcchhhHHhHHH-HHHHHHHhhhhccchhhhhh------hHHHHhcccccccccccchhccccccchhhhh-h
Confidence            3456666777777665543 45556777777777777773      33566677777777777777776654444554 7


Q ss_pred             cEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccc
Q psy8029         446 KELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIAC  519 (693)
Q Consensus       446 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c  519 (693)
                      +.|.+++|.++.+-.  +..+.+|+.||+++|-|.+..  .+..+...           ..|+.|.|.|||+-|
T Consensus       235 ~~L~lrnN~l~tL~g--ie~LksL~~LDlsyNll~~hs--eL~pLwsL-----------s~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  235 QLLNLRNNALTTLRG--IENLKSLYGLDLSYNLLSEHS--ELEPLWSL-----------SSLIVLWLEGNPLCC  293 (1096)
T ss_pred             eeeeecccHHHhhhh--HHhhhhhhccchhHhhhhcch--hhhHHHHH-----------HHHHHHhhcCCcccc
Confidence            777777777776533  356677777788777776432  22222221           336677888888765

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.71  E-value=2.8e-08  Score=87.88  Aligned_cols=126  Identities=21%  Similarity=0.406  Sum_probs=53.9

Q ss_pred             CCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhC
Q psy8029          92 LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFK  171 (693)
Q Consensus        92 l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  171 (693)
                      |+..+|.++.+|+.+.+..  .+..+...+|.++++|+.+.+.++ +..++..+|.++++|+.+.+.+ .+..+....|.
T Consensus         3 i~~~~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~   78 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS   78 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence            4445566666666666653  455666666666666666666553 5556666666665666666644 44455555555


Q ss_pred             CCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCC
Q psy8029         172 NLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKL  224 (693)
Q Consensus       172 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  224 (693)
                      .+++|+.+++..+ +..+....|.++ +|+.+.+.. .+..++...|.++++|
T Consensus        79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            5666666665543 444444555554 555555543 4444455555555444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.67  E-value=5.4e-08  Score=86.00  Aligned_cols=126  Identities=22%  Similarity=0.397  Sum_probs=61.8

Q ss_pred             ccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCC
Q psy8029         117 LHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNN  196 (693)
Q Consensus       117 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  196 (693)
                      ++..+|.++++|+.+.+.. .+..++..+|.++++|+.+.+.++ +..+...+|.++.+|+.+.+.+ .+..+....|..
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence            4556677777777777653 466677777777777777777664 6666666677776677777754 555555566666


Q ss_pred             CCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCc
Q psy8029         197 VPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYL  248 (693)
Q Consensus       197 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L  248 (693)
                      +++|+.+++..+ +..+....|.++ +++.+.+.. .+..++...|.++++|
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            667777766554 555666666665 666666654 4455555556555554

>PLN03150 hypothetical protein; Provisional

Probab=98.67  E-value=5.1e-08  Score=109.31  Aligned_cols=111  Identities=23%  Similarity=0.148  Sum_probs=62.7

Q ss_pred             CcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEE
Q psy8029         393 LNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTL  472 (693)
Q Consensus       393 L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  472 (693)
                      ++.|+|++|.+.+.    .+..+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..+..+..+++|+.|
T Consensus       420 v~~L~L~~n~L~g~----ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L  495 (623)
T PLN03150        420 IDGLGLDNQGLRGF----IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL  495 (623)
T ss_pred             EEEEECCCCCcccc----CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence            45556666655543    24445556666666666666665555556666666666666666665555555566666666


Q ss_pred             ECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCccccc
Q psy8029         473 DLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACN  520 (693)
Q Consensus       473 ~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~  520 (693)
                      +|++|++++..+..+....             .++..+++.+|+..|.
T Consensus       496 ~Ls~N~l~g~iP~~l~~~~-------------~~~~~l~~~~N~~lc~  530 (623)
T PLN03150        496 NLNGNSLSGRVPAALGGRL-------------LHRASFNFTDNAGLCG  530 (623)
T ss_pred             ECcCCcccccCChHHhhcc-------------ccCceEEecCCccccC
Confidence            6666666654444433221             1233566666666654

>KOG1859|consensus

Probab=98.58  E-value=1.1e-09  Score=115.70  Aligned_cols=181  Identities=22%  Similarity=0.296  Sum_probs=91.6

Q ss_pred             CCCCCCCCccEEEEEcCCCCCc-cHHHHhhhcC-------cccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcC
Q psy8029          42 LPEQNLGPFNAVTFTFCPLPDE-NFISLFSKLN-------ITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKE  113 (693)
Q Consensus        42 l~~~~~~~l~~L~l~~c~l~~~-~~~~~~~~~~-------~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~  113 (693)
                      +....|+.+++|++++|++... ++..+-..+.       +..|+.+ ++.|...++.-+     .-..|...+.++| .
T Consensus       103 i~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v-~ascggd~~ns~-----~Wn~L~~a~fsyN-~  175 (1096)
T KOG1859|consen  103 ISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHV-FASCGGDISNSP-----VWNKLATASFSYN-R  175 (1096)
T ss_pred             ceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHH-HHHhccccccch-----hhhhHhhhhcchh-h
Confidence            4445678999999999998764 3444322111       0111111 111100111100     0124555555665 5


Q ss_pred             cccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhh
Q psy8029         114 ITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAI  193 (693)
Q Consensus       114 i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  193 (693)
                      +..+... +.-++.|+.|+|++|+++...  .+..|++|++|||++|.+..++.-....|. |+.|.+++|.++.+-.  
T Consensus       176 L~~mD~S-Lqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~g--  249 (1096)
T KOG1859|consen  176 LVLMDES-LQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRG--  249 (1096)
T ss_pred             HHhHHHH-HHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhh--
Confidence            5544432 444556666666666665543  245566666666666666555443333343 6666666666554432  


Q ss_pred             cCCCCCCcEEECcCCCCCcCCC-CcCCCCCCCcEEEcCCCccc
Q psy8029         194 FNNVPNLRSLDISGNNISILPS-GVFSDLRKLQTFYANSNRFQ  235 (693)
Q Consensus       194 ~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~  235 (693)
                      +.++.+|+.||+++|-+.+... ..+..+..|+.|+|.+|.+-
T Consensus       250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            4556666666666665543221 11333455666666666554

>PLN03150 hypothetical protein; Provisional

Probab=98.57  E-value=1.3e-07  Score=106.06  Aligned_cols=109  Identities=21%  Similarity=0.207  Sum_probs=94.2

Q ss_pred             CCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcE
Q psy8029         368 GLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKE  447 (693)
Q Consensus       368 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  447 (693)
                      .++.|+|++|.+.+..+..+..+++|+.|+|++|.+++.    .+..+..+++|+.|+|++|++++..|..++.+++|+.
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~  494 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN----IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI  494 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc----CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence            478899999999999999999999999999999999865    4667889999999999999999999999999999999


Q ss_pred             EECCCCCCccCCCccccc-CCCccEEECCCCCCc
Q psy8029         448 LDLRHNNFSFIPDQLDSI-VSNKLTLDLSFNQIA  480 (693)
Q Consensus       448 L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~  480 (693)
                      |+|++|++++..+..+.. ..++..+++.+|...
T Consensus       495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             EECcCCcccccCChHHhhccccCceEEecCCccc
Confidence            999999999776665544 345678888888654

>KOG2120|consensus

Probab=98.27  E-value=3.5e-08  Score=94.10  Aligned_cols=64  Identities=19%  Similarity=0.119  Sum_probs=26.9

Q ss_pred             CCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCc-cccc-CcccCCCCCCCcEEEcCCCC
Q psy8029          97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNS-ITEL-YSGVFQYVPKLQVLDLGSND  161 (693)
Q Consensus        97 ~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~-~~~~~~~l~~L~~L~Ls~n~  161 (693)
                      ++.|.+|+.|.+.++ ++.+-....++.-.+|+.|+++.+. ++.. ..-.|..|+.|..|+++.|.
T Consensus       206 Ls~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~  271 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF  271 (419)
T ss_pred             HHHHHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh
Confidence            344445555555544 4444333334444445555554431 2211 11123444455555555443

>KOG1644|consensus

Probab=98.20  E-value=2.1e-06  Score=77.86  Aligned_cols=103  Identities=25%  Similarity=0.412  Sum_probs=54.8

Q ss_pred             CCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCCh-hhcCCCCCCcEEEC
Q psy8029         127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTR-AIFNNVPNLRSLDI  205 (693)
Q Consensus       127 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L  205 (693)
                      +...+||++|.+..++.  |..++.|.+|.+++|+|+.+.+..-.-+++|+.|.|.+|+|..+.. ..+..+++|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            45555666665544433  5555666666666666666655544445556666666665554332 22445556666666


Q ss_pred             cCCCCCcCCC---CcCCCCCCCcEEEcCC
Q psy8029         206 SGNNISILPS---GVFSDLRKLQTFYANS  231 (693)
Q Consensus       206 ~~n~i~~~~~---~~~~~l~~L~~L~l~~  231 (693)
                      -+|.++.-..   ..+..+|+|+.||...
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhh
Confidence            6665553221   2234455555555543

>KOG2120|consensus

Probab=98.20  E-value=4.4e-08  Score=93.39  Aligned_cols=179  Identities=19%  Similarity=0.170  Sum_probs=88.5

Q ss_pred             CceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCCh-hhhcCCCCCcE
Q psy8029         247 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TLFRDCKKLVK  325 (693)
Q Consensus       247 ~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~-~~~~~~~~L~~  325 (693)
                      .|+.+|++...+....+ ...++.|.+|+.|.+.++.+.+-.....+...+|+.++++.+..+++... -+|+.|+.|.+
T Consensus       186 Rlq~lDLS~s~it~stl-~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTL-HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHH-HHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            35555555443221111 12244555666666666655543223345556777777777766655442 34667777777


Q ss_pred             EEccCCCCCC-C-ChhhhccCccCceEeccCCcC----ccccCc-cCCCCCCeEeCCCCc-cccccccccCCCCCCcEEE
Q psy8029         326 LELQRNKLKY-L-PENLFESLKELYTLNLKNNQL----ENITSL-VGLSGLNSLDLSWNQ-LEQINLIAFDGLSSLNTVD  397 (693)
Q Consensus       326 L~l~~n~l~~-~-~~~~~~~~~~L~~L~Ls~n~l----~~l~~~-~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~  397 (693)
                      |+++-|.+.. . ....-.--++|+.|++++++-    +.+... ..+++|.+||||+|. ++.....+|..++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            7777775541 1 111111134566777776541    112222 556666666666653 2222223344455566666


Q ss_pred             CCCCcCcccccccCCCCccCCCCCcEEECCCC
Q psy8029         398 LSHNLLTFDEYQYGYSPLKQCVNLETINLSYN  429 (693)
Q Consensus       398 L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n  429 (693)
                      ++.|-.....   ....+...|+|.+||+-++
T Consensus       345 lsRCY~i~p~---~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  345 LSRCYDIIPE---TLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhhcCCChH---HeeeeccCcceEEEEeccc
Confidence            6555432111   1122344455555555444

>KOG4341|consensus

Probab=98.19  E-value=8.2e-08  Score=95.94  Aligned_cols=133  Identities=22%  Similarity=0.214  Sum_probs=63.9

Q ss_pred             CCCCccEEEecCCCCCCcCChhh-hcCCCCCcEEEccCCC-CCCCChhhh-ccCccCceEeccCCcCccc---cCc-cCC
Q psy8029         294 NSTNITNIVLTGHKKLTSLPSTL-FRDCKKLVKLELQRNK-LKYLPENLF-ESLKELYTLNLKNNQLENI---TSL-VGL  366 (693)
Q Consensus       294 ~~~~L~~L~l~~n~~l~~l~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~-~~~~~L~~L~Ls~n~l~~l---~~~-~~l  366 (693)
                      ++..|+.+..+++..+++.+-+. -.++.+|+.+.++.|+ ++......+ .+++.|+.+++.++....-   ... .++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            45566666666665544433222 2345666666666664 222221111 3455666666666543321   111 455


Q ss_pred             CCCCeEeCCCCccc-ccccccc----CCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCC
Q psy8029         367 SGLNSLDLSWNQLE-QINLIAF----DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYN  429 (693)
Q Consensus       367 ~~L~~L~Ls~n~l~-~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n  429 (693)
                      +.|+.+.++++... +.....+    ..+..|+.+.|++++.+.+.   ....+..|++|+.+++-++
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~---~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA---TLEHLSICRNLERIELIDC  436 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH---HHHHHhhCcccceeeeech
Confidence            66666666655432 1111111    22445566666665554332   1233445555555555555

>KOG4341|consensus

Probab=98.17  E-value=1.4e-07  Score=94.34  Aligned_cols=180  Identities=19%  Similarity=0.138  Sum_probs=89.2

Q ss_pred             CCccEEEEEcCCCC-CccHHHHhhhcCcccccEEEeecCCCCccCCCCccC-CCcccccEEEccCCcCccccccc-ccCC
Q psy8029          48 GPFNAVTFTFCPLP-DENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYF-DGLHFVKHILLSHNKEITGLHKD-IFKG  124 (693)
Q Consensus        48 ~~l~~L~l~~c~l~-~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~-~~l~~L~~L~Ls~n~~i~~~~~~-~~~~  124 (693)
                      +.+++|.+++|.-. +..+....  ..+++++.|++.++ ..+++..-..+ ..+++|++|++..|..|++.... .-.+
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~--~~CpnIehL~l~gc-~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g  214 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFA--SNCPNIEHLALYGC-KKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG  214 (483)
T ss_pred             cccccccccccccCCcchhhHHh--hhCCchhhhhhhcc-eeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence            46677778777533 22333321  25677777777776 34443332223 34777777777776566664332 4456


Q ss_pred             CCCCcEEEeeCCc-ccc--cCcccCCCCCCCcEEEcCCCCCCccChhhh----CCCCCCCEEEccCC-CCCCCCh-hhcC
Q psy8029         125 TPQLESLNLRGNS-ITE--LYSGVFQYVPKLQVLDLGSNDVAYMDPEIF----KNLTSLRILNLDHN-QLINLTR-AIFN  195 (693)
Q Consensus       125 l~~L~~L~L~~n~-i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~L~~n-~l~~~~~-~~~~  195 (693)
                      +++|++|+++++. |++  +.. .+.++..++.+.+.+|.  +...+++    +.+..+..+++..+ .+++..- ..-.
T Consensus       215 C~kL~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~--e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~  291 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCL--ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC  291 (483)
T ss_pred             hhhHHHhhhccCchhhcCcchH-Hhccchhhhhhhhcccc--cccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence            7777777777763 222  111 24556666666666542  2222222    23344445554443 2222221 1112


Q ss_pred             CCCCCcEEECcCCCC-CcCCCCc-CCCCCCCcEEEcCCCc
Q psy8029         196 NVPNLRSLDISGNNI-SILPSGV-FSDLRKLQTFYANSNR  233 (693)
Q Consensus       196 ~l~~L~~L~L~~n~i-~~~~~~~-~~~l~~L~~L~l~~n~  233 (693)
                      .+..|+.|+.+++.- +..+... -.++++|+.+-++.++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~  331 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ  331 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc
Confidence            345566666655432 1111111 1334555555555553

>KOG1644|consensus

Probab=98.15  E-value=2.7e-06  Score=77.13  Aligned_cols=86  Identities=26%  Similarity=0.336  Sum_probs=50.6

Q ss_pred             ccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEE
Q psy8029         345 KELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI  424 (693)
Q Consensus       345 ~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L  424 (693)
                      .....++|++|.+..++.+..++.|.+|.+.+|+|+.+.+.--.-++.|+.|.|.+|.|...+   ...++..||+|++|
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~---dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELG---DLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhh---hcchhccCCcccee
Confidence            345556666666666666666666666666666666666654444566666666666665443   23445555555555


Q ss_pred             ECCCCCCCc
Q psy8029         425 NLSYNRISS  433 (693)
Q Consensus       425 ~Ls~n~l~~  433 (693)
                      .+-+|.++.
T Consensus       119 tll~Npv~~  127 (233)
T KOG1644|consen  119 TLLGNPVEH  127 (233)
T ss_pred             eecCCchhc
Confidence            555555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.05  E-value=6.2e-07  Score=84.64  Aligned_cols=207  Identities=16%  Similarity=0.187  Sum_probs=126.5

Q ss_pred             CCCccEEEEEcCCCCCccHHHHhhhc-CcccccEEEeecCCCCccC-----CC------CccCCCcccccEEEccCCcCc
Q psy8029          47 LGPFNAVTFTFCPLPDENFISLFSKL-NITTINTLAFSNSPSNVGV-----LS------PPYFDGLHFVKHILLSHNKEI  114 (693)
Q Consensus        47 ~~~l~~L~l~~c~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~i~~-----l~------~~~~~~l~~L~~L~Ls~n~~i  114 (693)
                      +..++++++|++.+..+....++... ..++|+..+++..   ++.     ++      ..++.+|++|+..+||.| .+
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~---ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Af  104 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA---FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AF  104 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh---hhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-cc
Confidence            35678899999988877666665543 3556777777652   221     11      245677888888888888 66


Q ss_pred             cccc----ccccCCCCCCcEEEeeCCcccccCccc-------------CCCCCCCcEEEcCCCCCCccCh----hhhCCC
Q psy8029         115 TGLH----KDIFKGTPQLESLNLRGNSITELYSGV-------------FQYVPKLQVLDLGSNDVAYMDP----EIFKNL  173 (693)
Q Consensus       115 ~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~~~-------------~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l  173 (693)
                      ..-.    .+.++....|++|.+++|.+..+...-             ...-|.|++.....|++..-+.    ..|..-
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh  184 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH  184 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence            5422    234566678888888888664332211             1345678888888887764432    223333


Q ss_pred             CCCCEEEccCCCCCCC--Ch---hhcCCCCCCcEEECcCCCCCcCCC----CcCCCCCCCcEEEcCCCccccCChhh-hh
Q psy8029         174 TSLRILNLDHNQLINL--TR---AIFNNVPNLRSLDISGNNISILPS----GVFSDLRKLQTFYANSNRFQMFPKDL-FA  243 (693)
Q Consensus       174 ~~L~~L~L~~n~l~~~--~~---~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~-~~  243 (693)
                      .+|+++.+.+|.|..-  ..   ..+..+.+|+.||+..|.++....    .++..++.|+.|.+.+|-++.-.... +.
T Consensus       185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~  264 (388)
T COG5238         185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR  264 (388)
T ss_pred             cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence            5788888888877532  11   223456788888888887774332    23445666778888777766322211 11


Q ss_pred             -----cccCceEEEEecCC
Q psy8029         244 -----EMKYLQVIKISYHK  257 (693)
Q Consensus       244 -----~~~~L~~L~l~~n~  257 (693)
                           ..++|+.|...+|.
T Consensus       265 ~f~e~~~p~l~~L~~~Yne  283 (388)
T COG5238         265 RFNEKFVPNLMPLPGDYNE  283 (388)
T ss_pred             HhhhhcCCCccccccchhh
Confidence                 23556666666654

>TIGR00864 PCC polycystin cation channel protein

Probab=98.04  E-value=3.8e-06  Score=102.80  Aligned_cols=80  Identities=23%  Similarity=0.344  Sum_probs=63.7

Q ss_pred             ECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeec
Q psy8029         473 DLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECF  552 (693)
Q Consensus       473 ~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  552 (693)
                      ||++|+|+.++...|..+              .+|+.|+|++|||.|||++.||.+|++.... .     ......+.|.
T Consensus         1 DLSnN~LstLp~g~F~~L--------------~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v-~-----v~~~~~i~Ca   60 (2740)
T TIGR00864         1 DISNNKISTIEEGICANL--------------CNLSEIDLSGNPFECDCGLARLPRWAEEKGV-K-----VRQPEAALCA   60 (2740)
T ss_pred             CCCCCcCCccChHHhccC--------------CCceEEEeeCCccccccccHHHHHHHHhcCc-c-----ccCCcccCCC
Confidence            578888888888777765              3478999999999999999999999987521 1     1233568899


Q ss_pred             CC---CCccccccCCCCCcccCC
Q psy8029         553 GN---AGVGINSVRPENLTCDTK  572 (693)
Q Consensus       553 ~~---~~~~~~~l~~~~l~c~~~  572 (693)
                      .|   +|..+.+++..++.|..+
T Consensus        61 sP~~LrG~~L~~l~~~d~~C~~~   83 (2740)
T TIGR00864        61 GPGALAGQPLLGIPLLDSGCDEE   83 (2740)
T ss_pred             CChHHCCCCcccCCcccCCCCCc
Confidence            99   899999999888888744

Note: this model has been restricted to the amino half because for technical reasons.

>KOG2982|consensus

Probab=98.01  E-value=9.8e-07  Score=84.42  Aligned_cols=83  Identities=23%  Similarity=0.350  Sum_probs=44.8

Q ss_pred             CCcEEEcCCCCCCccCh-hhh-CCCCCCCEEEccCCCCCCCCh--hhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcE
Q psy8029         151 KLQVLDLGSNDVAYMDP-EIF-KNLTSLRILNLDHNQLINLTR--AIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQT  226 (693)
Q Consensus       151 ~L~~L~Ls~n~l~~~~~-~~~-~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  226 (693)
                      .++.|.+.++.|..... ..| ..++.++++||.+|+|+.-..  ..+.++|.|+.|+++.|++.......=....+|++
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            34455555665554332 112 346777888888887775332  34566777777777777665432211022345555


Q ss_pred             EEcCCCc
Q psy8029         227 FYANSNR  233 (693)
Q Consensus       227 L~l~~n~  233 (693)
                      |-|.+..
T Consensus       126 lVLNgT~  132 (418)
T KOG2982|consen  126 LVLNGTG  132 (418)
T ss_pred             EEEcCCC
Confidence            5554433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.99  E-value=1.1e-06  Score=83.09  Aligned_cols=43  Identities=26%  Similarity=0.422  Sum_probs=22.2

Q ss_pred             CCCCCccEEEcCCCCCccc-C---cccccCCCCccEEEecCCCCCCcC
Q psy8029         269 ANLPLLNTVILGESSIAEL-P---SDLFWNSTNITNIVLTGHKKLTSL  312 (693)
Q Consensus       269 ~~l~~L~~L~l~~n~l~~~-~---~~~~~~~~~L~~L~l~~n~~l~~l  312 (693)
                      -.||+|+.+++++|.+..- +   .+..+..+.|++|.+++| .++.+
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~  135 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPI  135 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCcc
Confidence            3455555555555554321 1   123344566666666666 55544

>KOG4579|consensus

Probab=97.95  E-value=5.5e-07  Score=76.18  Aligned_cols=109  Identities=17%  Similarity=0.298  Sum_probs=62.4

Q ss_pred             CcEEEccCCCCCCCChhh--hccCccCceEeccCCcCccccCc--cCCCCCCeEeCCCCccccccccccCCCCCCcEEEC
Q psy8029         323 LVKLELQRNKLKYLPENL--FESLKELYTLNLKNNQLENITSL--VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDL  398 (693)
Q Consensus       323 L~~L~l~~n~l~~~~~~~--~~~~~~L~~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  398 (693)
                      +..+++++|++..++...  .....+|+..+|++|.+..+|..  ..++.++.|++++|.|++++.+ +..++.|+.|++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl  107 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNL  107 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhccc
Confidence            445555666555444321  23344555566666666665544  4455666666666666666554 666677777777


Q ss_pred             CCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChh
Q psy8029         399 SHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDD  437 (693)
Q Consensus       399 ~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  437 (693)
                      +.|.+...     +.++..+.++-.|+..+|.+..++.+
T Consensus       108 ~~N~l~~~-----p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  108 RFNPLNAE-----PRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             ccCccccc-----hHHHHHHHhHHHhcCCCCccccCcHH
Confidence            77766643     34444455566666666655555544

>KOG2982|consensus

Probab=97.92  E-value=2.4e-06  Score=81.77  Aligned_cols=64  Identities=22%  Similarity=0.229  Sum_probs=37.2

Q ss_pred             CCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCC-hhHHhcCCCCcEEECCCCCCcc
Q psy8029         391 SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLF-DDWISSMTSLKELDLRHNNFSF  457 (693)
Q Consensus       391 ~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~  457 (693)
                      +++..+.+..|.+....   ....+...+.+..|+|+.++|.... -+.+.++++|..|.+++|.+..
T Consensus       199 pnv~sv~v~e~PlK~~s---~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTES---SEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             ccchheeeecCcccchh---hcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            45555666666555443   1233344455556777777666432 2445677777777777777653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.88  E-value=1e-05  Score=55.49  Aligned_cols=38  Identities=39%  Similarity=0.581  Sum_probs=23.2

Q ss_pred             CCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccC
Q psy8029         420 NLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFI  458 (693)
Q Consensus       420 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  458 (693)
                      +|++|++++|+|+++++. ++++++|+.|++++|+|+.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCCC
Confidence            566666666666665543 56666666666666666654

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.81  E-value=2.4e-05  Score=53.67  Aligned_cols=38  Identities=37%  Similarity=0.609  Sum_probs=18.0

Q ss_pred             cccEEEccCCcCcccccccccCCCCCCcEEEeeCCccccc
Q psy8029         102 FVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITEL  141 (693)
Q Consensus       102 ~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~  141 (693)
                      +|++|++++| +|+++++. ++++++|++|++++|+|+++
T Consensus         2 ~L~~L~l~~N-~i~~l~~~-l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPPE-LSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSS-S-SSHGGH-GTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCC-CCcccCch-HhCCCCCCEEEecCCCCCCC
Confidence            4455555555 55554442 44555555555555555443

...

>KOG4579|consensus

Probab=97.80  E-value=1.8e-06  Score=73.06  Aligned_cols=90  Identities=21%  Similarity=0.272  Sum_probs=43.6

Q ss_pred             CCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEE
Q psy8029         149 VPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFY  228 (693)
Q Consensus       149 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  228 (693)
                      ...|+..+|++|.+...++..-...+.++.|++++|.|++++.+ +..++.|+.|+++.|.+...+...+ .+.++-.|+
T Consensus        52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~-~L~~l~~Ld  129 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIA-PLIKLDMLD  129 (177)
T ss_pred             CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHH-HHHhHHHhc
Confidence            34444455555555555444333344555555555555555444 4555555555555555544433322 244555555


Q ss_pred             cCCCccccCChh
Q psy8029         229 ANSNRFQMFPKD  240 (693)
Q Consensus       229 l~~n~l~~~~~~  240 (693)
                      ..+|.+..++..
T Consensus       130 s~~na~~eid~d  141 (177)
T KOG4579|consen  130 SPENARAEIDVD  141 (177)
T ss_pred             CCCCccccCcHH
Confidence            555555544444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.73  E-value=0.00012  Score=75.62  Aligned_cols=13  Identities=8%  Similarity=-0.102  Sum_probs=6.5

Q ss_pred             ccCceEEEEecCC
Q psy8029         245 MKYLQVIKISYHK  257 (693)
Q Consensus       245 ~~~L~~L~l~~n~  257 (693)
                      +.+++.|++++|.
T Consensus        51 ~~~l~~L~Is~c~   63 (426)
T PRK15386         51 ARASGRLYIKDCD   63 (426)
T ss_pred             hcCCCEEEeCCCC
Confidence            4455555555543

>KOG3665|consensus

Probab=97.66  E-value=2.3e-05  Score=87.90  Aligned_cols=133  Identities=19%  Similarity=0.239  Sum_probs=76.2

Q ss_pred             ccccEEEccCCcCcccccc-cccCCCCCCcEEEeeCCccccc-CcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCE
Q psy8029         101 HFVKHILLSHNKEITGLHK-DIFKGTPQLESLNLRGNSITEL-YSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI  178 (693)
Q Consensus       101 ~~L~~L~Ls~n~~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  178 (693)
                      .+|++|++++...+..-.+ ....-+|.|+.|.+++-.+..- -...+.++++|..||+|+++++.+  ..++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            4677777776533322221 1123367777777776554321 112345677777777777777766  44677777777


Q ss_pred             EEccCCCCCCC-ChhhcCCCCCCcEEECcCCCCCcCCC------CcCCCCCCCcEEEcCCCccc
Q psy8029         179 LNLDHNQLINL-TRAIFNNVPNLRSLDISGNNISILPS------GVFSDLRKLQTFYANSNRFQ  235 (693)
Q Consensus       179 L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~------~~~~~l~~L~~L~l~~n~l~  235 (693)
                      |.+.+=.+..- .-..+.++++|+.||+|.......+.      +....+|+|+.||.+++.+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            77776555431 12335567777777777654433220      11234677777777766554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.60  E-value=0.00057  Score=70.76  Aligned_cols=91  Identities=24%  Similarity=0.395  Sum_probs=54.8

Q ss_pred             CCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCC-CCCCCChhhhccCccCc
Q psy8029         270 NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN-KLKYLPENLFESLKELY  348 (693)
Q Consensus       270 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~  348 (693)
                      .+.+++.|++++|.++.+|.    -..+|+.|.+++|..++.+|..+   .++|++|++++| .+..+|.       .|+
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~-------sLe  115 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV----LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE-------SVR  115 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC----CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc-------ccc
Confidence            35677888888887777762    23467888887776676666532   356777777777 5544442       356


Q ss_pred             eEeccCCcCccccCccCCCCCCeEeCCC
Q psy8029         349 TLNLKNNQLENITSLVGLSGLNSLDLSW  376 (693)
Q Consensus       349 ~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~  376 (693)
                      .|+++.+....++.  -.++|+.|.+.+
T Consensus       116 ~L~L~~n~~~~L~~--LPssLk~L~I~~  141 (426)
T PRK15386        116 SLEIKGSATDSIKN--VPNGLTSLSINS  141 (426)
T ss_pred             eEEeCCCCCccccc--CcchHhheeccc
Confidence            66666554433322  123456666543

>KOG3665|consensus

Probab=97.36  E-value=6.2e-05  Score=84.45  Aligned_cols=133  Identities=17%  Similarity=0.184  Sum_probs=70.6

Q ss_pred             cCCCCCcEEEccCCCCCCC-ChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCcccc-ccccccCCCCCCcE
Q psy8029         318 RDCKKLVKLELQRNKLKYL-PENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQ-INLIAFDGLSSLNT  395 (693)
Q Consensus       318 ~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~  395 (693)
                      .-+|+|+.|.+++-.+..- -...+.++++|..||+|+.+++.+...+.+++|+.|.+.+=.+.. ..-..+.++++|+.
T Consensus       145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            3456666666665444311 122345566666666666666666444666666666666555543 22223445777777


Q ss_pred             EECCCCcCccccc--ccCCCCccCCCCCcEEECCCCCCCcCChh-HHhcCCCCcEEEC
Q psy8029         396 VDLSHNLLTFDEY--QYGYSPLKQCVNLETINLSYNRISSLFDD-WISSMTSLKELDL  450 (693)
Q Consensus       396 L~L~~n~l~~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L  450 (693)
                      ||+|.........  ..-......+|.|+.||.|++.+.+..-+ .+...++|+.+.+
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~  282 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAA  282 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhh
Confidence            7777654442210  00012233477888888887766643322 2224455554443

>KOG2739|consensus

Probab=97.33  E-value=7.2e-05  Score=71.11  Aligned_cols=83  Identities=29%  Similarity=0.425  Sum_probs=35.1

Q ss_pred             CCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCC--CCCccChhhhCCCCCCCEEEccCCCCCCCCh-hhcCCCCCCcE
Q psy8029         126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSN--DVAYMDPEIFKNLTSLRILNLDHNQLINLTR-AIFNNVPNLRS  202 (693)
Q Consensus       126 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~  202 (693)
                      ..|+.|++.+..++.+..  |-.+++|++|.++.|  ++..-.+-....+++|++|++++|++..+.. ..+..+.+|..
T Consensus        43 ~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             cchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            344444444444444332  344555555555555  2221111112334555555555555543211 11233344444


Q ss_pred             EECcCCCC
Q psy8029         203 LDISGNNI  210 (693)
Q Consensus       203 L~L~~n~i  210 (693)
                      |++.+|..
T Consensus       121 Ldl~n~~~  128 (260)
T KOG2739|consen  121 LDLFNCSV  128 (260)
T ss_pred             hhcccCCc
Confidence            44444433

>KOG2123|consensus

Probab=97.29  E-value=5.1e-06  Score=78.86  Aligned_cols=82  Identities=24%  Similarity=0.235  Sum_probs=45.7

Q ss_pred             CCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccc-cccCCCCCCcEEECC
Q psy8029         321 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINL-IAFDGLSSLNTVDLS  399 (693)
Q Consensus       321 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~  399 (693)
                      .+.++|++.+|.+++|..  ...++.|+.|.|+-|+|+++.....|+.|++|+|..|.|.++.. .-+.++++|+.|.|.
T Consensus        19 ~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            345555555555555443  34556666666666666666555566666666666666555433 223455666666665


Q ss_pred             CCcCc
Q psy8029         400 HNLLT  404 (693)
Q Consensus       400 ~n~l~  404 (693)
                      .|.-.
T Consensus        97 ENPCc  101 (388)
T KOG2123|consen   97 ENPCC  101 (388)
T ss_pred             cCCcc
Confidence            55544

>smart00082 LRRCT Leucine rich repeat C-terminal domain

Probab=97.27  E-value=0.00016  Score=51.79  Aligned_cols=48  Identities=19%  Similarity=0.402  Sum_probs=32.8

Q ss_pred             CcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCCC--CccccccCCCCCcc
Q psy8029         515 NPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNA--GVGINSVRPENLTC  569 (693)
Q Consensus       515 Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~--~~~~~~l~~~~l~c  569 (693)
                      |||.|||++.||..|+...  ..     ......+.|..|.  ...+.++..+++.|
T Consensus         1 NP~~CdC~l~~~~~w~~~~--~~-----~~~~~~~~C~~P~~~~~~l~~~~~~~~~C   50 (51)
T smart00082        1 NPFICDCELRWLLRWLQAN--EH-----LQDPVSLRCASPSSLRGPLLELLHSEFKC   50 (51)
T ss_pred             CCccCcCCchHHHHHHHhC--Cc-----cCCCCCCEeCCcHHHHhHHHcCCHhhCCC
Confidence            8999999999999999872  11     1233478999881  14465665555544

>KOG2739|consensus

Probab=97.26  E-value=0.00016  Score=68.83  Aligned_cols=107  Identities=26%  Similarity=0.263  Sum_probs=64.0

Q ss_pred             ccCccCceEeccCCcCccccCccCCCCCCeEeCCCC--ccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCC
Q psy8029         342 ESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWN--QLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCV  419 (693)
Q Consensus       342 ~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~  419 (693)
                      .....|+.+.+.+..++++..+..+++|+.|.++.|  ++.+-.......+++|++|++++|+|....   ...++..+.
T Consensus        40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ls---tl~pl~~l~  116 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLS---TLRPLKELE  116 (260)
T ss_pred             ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccc---ccchhhhhc
Confidence            344556666666666666666666677777777777  433322222334577777777777776432   244566667


Q ss_pred             CCcEEECCCCCCCcCC---hhHHhcCCCCcEEECC
Q psy8029         420 NLETINLSYNRISSLF---DDWISSMTSLKELDLR  451 (693)
Q Consensus       420 ~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~  451 (693)
                      +|..|++.+|..+..-   ...|.-+++|+.||-.
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            7777777777655532   2345566666666544

>KOG2123|consensus

Probab=97.20  E-value=1.7e-05  Score=75.49  Aligned_cols=80  Identities=34%  Similarity=0.373  Sum_probs=37.0

Q ss_pred             ccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccCh-hhhCCCCCCCEE
Q psy8029         101 HFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP-EIFKNLTSLRIL  179 (693)
Q Consensus       101 ~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L  179 (693)
                      .+.+.|++-+| ++++|..  ...++.|++|.|+-|+|+.+.+  |..|++|++|+|..|.|.++.. ..+.++++|+.|
T Consensus        19 ~~vkKLNcwg~-~L~DIsi--c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGC-GLDDISI--CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCC-CccHHHH--HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34444444444 4444433  3344455555555555544433  4445555555555554444322 223444555555


Q ss_pred             EccCCC
Q psy8029         180 NLDHNQ  185 (693)
Q Consensus       180 ~L~~n~  185 (693)
                      -|..|.
T Consensus        94 WL~ENP   99 (388)
T KOG2123|consen   94 WLDENP   99 (388)
T ss_pred             hhccCC
Confidence            554443

>KOG1947|consensus

Probab=96.65  E-value=0.00026  Score=77.91  Aligned_cols=237  Identities=22%  Similarity=0.211  Sum_probs=104.8

Q ss_pred             CcccccEEEccCCcCccccc-ccccCCCCCCcEEEeeCC--cccccC---cccCCCCCCCcEEEcCCCC-CCccChhhhC
Q psy8029          99 GLHFVKHILLSHNKEITGLH-KDIFKGTPQLESLNLRGN--SITELY---SGVFQYVPKLQVLDLGSND-VAYMDPEIFK  171 (693)
Q Consensus        99 ~l~~L~~L~Ls~n~~i~~~~-~~~~~~l~~L~~L~L~~n--~i~~~~---~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~  171 (693)
                      .++.|+.|.+..+..+.... ......+++|+.|+++++  .+...+   ......+.+|+.|+++++. ++...-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            35666666666664454422 122445666666666652  111111   1123345666666666665 4444333333


Q ss_pred             C-CCCCCEEEccCCC-CCCCCh-hhcCCCCCCcEEECcCCCCCc---CCCCcCCCCCCCcEEEcCCCccccCChhhhhcc
Q psy8029         172 N-LTSLRILNLDHNQ-LINLTR-AIFNNVPNLRSLDISGNNISI---LPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEM  245 (693)
Q Consensus       172 ~-l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  245 (693)
                      . +++|++|.+.++. +++..- .....++.|++|+++++....   +... ..++++++.|.+....          .+
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~----------~c  334 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLN----------GC  334 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcC----------CC
Confidence            2 5666666655554 332221 122345566666666554320   1111 2234444443332211          02


Q ss_pred             cCceEEEEecCCCcc-cccCccccCCCCCccEEEcCCCCCcccC-cccccCCCCccEEEecCCCCCCcCChhhhcCCCCC
Q psy8029         246 KYLQVIKISYHKDSL-KELPSGLFANLPLLNTVILGESSIAELP-SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL  323 (693)
Q Consensus       246 ~~L~~L~l~~n~~~~-~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L  323 (693)
                      ..++.+.+....... ..+.......+++++.+.+..+...... .....+|+.|. ..+...          ......+
T Consensus       335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~----------~~~~~~l  403 (482)
T KOG1947|consen  335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR----------LCRSDSL  403 (482)
T ss_pred             ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH----------hccCCcc
Confidence            223333222221101 1222333456667777777666533333 23333444441 111111          1122237


Q ss_pred             cEEEccCCCCCCCCh-hhhcc-CccCceEeccCCcC
Q psy8029         324 VKLELQRNKLKYLPE-NLFES-LKELYTLNLKNNQL  357 (693)
Q Consensus       324 ~~L~l~~n~l~~~~~-~~~~~-~~~L~~L~Ls~n~l  357 (693)
                      +.|+++.+....... ..... +..++.+++.++..
T Consensus       404 ~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  404 RVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             ceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence            888888875432221 11111 55566666666543

>KOG1947|consensus

Probab=96.51  E-value=0.00063  Score=74.91  Aligned_cols=238  Identities=20%  Similarity=0.198  Sum_probs=116.7

Q ss_pred             CCCCCcEEEcCCC-CCCccC-hhhhCCCCCCCEEEccCC--CCCCCC---hhhcCCCCCCcEEECcCCC-CCcCCCCcCC
Q psy8029         148 YVPKLQVLDLGSN-DVAYMD-PEIFKNLTSLRILNLDHN--QLINLT---RAIFNNVPNLRSLDISGNN-ISILPSGVFS  219 (693)
Q Consensus       148 ~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n--~l~~~~---~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~  219 (693)
                      .++.|+.|.+..+ .+.... ......+++|+.|+++++  .+....   ......+++|+.|+++.+. ++...-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            3567777777666 333321 223456777777777762  111111   1223455677777777766 4433322222


Q ss_pred             -CCCCCcEEEcCCCc-cccCC-hhhhhcccCceEEEEecCCCcccc-cCccccCCCCCccEEEcCCCCCcccCcccccCC
Q psy8029         220 -DLRKLQTFYANSNR-FQMFP-KDLFAEMKYLQVIKISYHKDSLKE-LPSGLFANLPLLNTVILGESSIAELPSDLFWNS  295 (693)
Q Consensus       220 -~l~~L~~L~l~~n~-l~~~~-~~~~~~~~~L~~L~l~~n~~~~~~-i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  295 (693)
                       .+++|+.|.+.++. ++.-. ......++.|++|+++++...... +... ..++++++.+.+....          ++
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~----------~c  334 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLN----------GC  334 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcC----------CC
Confidence             26677777766665 44221 122345667777777766532111 1111 2335555554433221          13


Q ss_pred             CCccEEEecCCCCCC--cCChhhhcCCCCCcEEEccCCCCCCCC-hhhhccCccCceEeccCCcCccccCccCCCCCCeE
Q psy8029         296 TNITNIVLTGHKKLT--SLPSTLFRDCKKLVKLELQRNKLKYLP-ENLFESLKELYTLNLKNNQLENITSLVGLSGLNSL  372 (693)
Q Consensus       296 ~~L~~L~l~~n~~l~--~l~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L  372 (693)
                      ..++.+.+.+.....  .+.......+++++.+.+..+...... ...+.+++.|. ..+....       ....+++.|
T Consensus       335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~-------~~~~~l~~L  406 (482)
T KOG1947|consen  335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRL-------CRSDSLRVL  406 (482)
T ss_pred             ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHh-------ccCCccceE
Confidence            344444444432222  233334566777777777777644433 23445566552 2211110       112226777


Q ss_pred             eCCCCccccccc-cccCC-CCCCcEEECCCCcCc
Q psy8029         373 DLSWNQLEQINL-IAFDG-LSSLNTVDLSHNLLT  404 (693)
Q Consensus       373 ~Ls~n~l~~~~~-~~~~~-l~~L~~L~L~~n~l~  404 (693)
                      +++.+....... ..... +..++.+++.++...
T Consensus       407 ~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~  440 (482)
T KOG1947|consen  407 NLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI  440 (482)
T ss_pred             ecccCccccccchHHHhhhhhccccCCccCcccc
Confidence            777776443221 11111 556677777766544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.12  E-value=0.012  Score=30.99  Aligned_cols=16  Identities=31%  Similarity=0.468  Sum_probs=7.3

Q ss_pred             cCcEEEccCCcccccc
Q psy8029         639 LITDLDLSYNNISHVD  654 (693)
Q Consensus       639 ~L~~L~Ls~N~l~~i~  654 (693)
                      +|+.|+|++|+|+++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4566666666666554

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.84  E-value=0.015  Score=33.00  Aligned_cols=17  Identities=47%  Similarity=0.683  Sum_probs=7.6

Q ss_pred             CcEEEeeCCcccccCcc
Q psy8029         128 LESLNLRGNSITELYSG  144 (693)
Q Consensus       128 L~~L~L~~n~i~~~~~~  144 (693)
                      |++|++++|+++.+|+.
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            44444444444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.94  E-value=0.034  Score=31.55  Aligned_cols=21  Identities=24%  Similarity=0.343  Sum_probs=15.9

Q ss_pred             cccEEEccCCcCcccccccccCC
Q psy8029         102 FVKHILLSHNKEITGLHKDIFKG  124 (693)
Q Consensus       102 ~L~~L~Ls~n~~i~~~~~~~~~~  124 (693)
                      +|++||+++| .++.+|+. |++
T Consensus         1 ~L~~Ldls~n-~l~~ip~~-~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSS-FSN   21 (22)
T ss_dssp             TESEEEETSS-EESEEGTT-TTT
T ss_pred             CccEEECCCC-cCEeCChh-hcC
Confidence            4788888888 88877776 654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308|consensus

Probab=93.12  E-value=0.00085  Score=72.18  Aligned_cols=85  Identities=19%  Similarity=0.271  Sum_probs=43.8

Q ss_pred             CCCCCEEEccCCCCCCCC----hhhcCCCCC-CcEEECcCCCCCcCC----CCcCCCC-CCCcEEEcCCCccccCCh---
Q psy8029         173 LTSLRILNLDHNQLINLT----RAIFNNVPN-LRSLDISGNNISILP----SGVFSDL-RKLQTFYANSNRFQMFPK---  239 (693)
Q Consensus       173 l~~L~~L~L~~n~l~~~~----~~~~~~l~~-L~~L~L~~n~i~~~~----~~~~~~l-~~L~~L~l~~n~l~~~~~---  239 (693)
                      ..++++|++.++.++...    ...+...+. +..+++..|.+....    ...+..+ ..++.++++.|.++.-..   
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            455666666666555221    122333344 555666666555321    1112333 556677777777663222   


Q ss_pred             -hhhhcccCceEEEEecCC
Q psy8029         240 -DLFAEMKYLQVIKISYHK  257 (693)
Q Consensus       240 -~~~~~~~~L~~L~l~~n~  257 (693)
                       .....++.++++.++.|.
T Consensus       283 ~~~l~~~~~l~~l~l~~n~  301 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNP  301 (478)
T ss_pred             HHHHhhhHHHHHhhcccCc
Confidence             223455677777777776

>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.04  E-value=0.064  Score=32.50  Aligned_cols=28  Identities=43%  Similarity=0.992  Sum_probs=21.4

Q ss_pred             CCCCCcEeeecCCCceEEEEcCCCCcccCCCCCC
Q psy8029         573 PCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLP  606 (693)
Q Consensus       573 ~cp~~~~~~~~~~~~l~~l~ls~n~l~~ip~~~~  606 (693)
                      +||..|.|.      ...++|++.+|+++|..++
T Consensus         1 ~CP~~C~C~------~~~V~C~~~~L~~vP~~lP   28 (28)
T PF01462_consen    1 ACPRPCTCS------GLTVDCSGRGLTAVPSDLP   28 (28)
T ss_dssp             SSETTSEEE------TTEEEETTSS-SSS-STS-
T ss_pred             CcCCCCEec------CCEeECCCCCCCccCCCCc
Confidence            389999999      4678999999999998653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.70  E-value=0.076  Score=31.50  Aligned_cols=20  Identities=35%  Similarity=0.654  Sum_probs=8.8

Q ss_pred             CCcEEEeeCCcccccCcccC
Q psy8029         127 QLESLNLRGNSITELYSGVF  146 (693)
Q Consensus       127 ~L~~L~L~~n~i~~~~~~~~  146 (693)
                      +|++|+|++|+|+.+|.++|
T Consensus         3 ~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        3 NLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCEEECCCCcCCcCCHHHc
Confidence            34444444444444444433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.70  E-value=0.076  Score=31.50  Aligned_cols=20  Identities=35%  Similarity=0.654  Sum_probs=8.8

Q ss_pred             CCcEEEeeCCcccccCcccC
Q psy8029         127 QLESLNLRGNSITELYSGVF  146 (693)
Q Consensus       127 ~L~~L~L~~n~i~~~~~~~~  146 (693)
                      +|++|+|++|+|+.+|.++|
T Consensus         3 ~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        3 NLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCEEECCCCcCCcCCHHHc
Confidence            34444444444444444433

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.13  E-value=0.096  Score=27.52  Aligned_cols=11  Identities=36%  Similarity=0.688  Sum_probs=3.2

Q ss_pred             CcEEEeeCCcc
Q psy8029         128 LESLNLRGNSI  138 (693)
Q Consensus       128 L~~L~L~~n~i  138 (693)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33344443333

...

>KOG3864|consensus

Probab=92.08  E-value=0.03  Score=51.51  Aligned_cols=83  Identities=18%  Similarity=0.134  Sum_probs=58.3

Q ss_pred             CCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCC-CCCcCChhHHhcCCCCc
Q psy8029         368 GLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYN-RISSLFDDWISSMTSLK  446 (693)
Q Consensus       368 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~  446 (693)
                      .++.+|-++..|..+.-..+.+++.++.|.+.+|.--+........  .-.++|+.|+|++| +||+-.-.++..+++|+
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~--~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLG--GLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhc--ccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            4677888888888877777888888888888877544321100011  13568888888888 68877777777888888


Q ss_pred             EEECCC
Q psy8029         447 ELDLRH  452 (693)
Q Consensus       447 ~L~L~~  452 (693)
                      .|.+.+
T Consensus       180 ~L~l~~  185 (221)
T KOG3864|consen  180 RLHLYD  185 (221)
T ss_pred             HHHhcC
Confidence            887764

>KOG3864|consensus

Probab=91.46  E-value=0.026  Score=51.97  Aligned_cols=90  Identities=19%  Similarity=0.143  Sum_probs=59.5

Q ss_pred             CCCCCCC--CccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccC-CCcccccEEEccCCcCccccc
Q psy8029          42 LPEQNLG--PFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYF-DGLHFVKHILLSHNKEITGLH  118 (693)
Q Consensus        42 l~~~~~~--~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~-~~l~~L~~L~Ls~n~~i~~~~  118 (693)
                      +|....+  .++.++-++|.+..+++..+   .+++.++.|.+.+| ..+.+.--..+ +-.++|+.|++++|..|++-.
T Consensus        93 lp~~~~~~~~IeaVDAsds~I~~eGle~L---~~l~~i~~l~l~~c-k~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G  168 (221)
T KOG3864|consen   93 LPGPNADNVKIEAVDASDSSIMYEGLEHL---RDLRSIKSLSLANC-KYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG  168 (221)
T ss_pred             CCCCCCCcceEEEEecCCchHHHHHHHHH---hccchhhhheeccc-cchhhHHHHHhcccccchheeeccCCCeechhH
Confidence            4444444  45777778888866665554   46778888888877 33331111111 135788899999888888877


Q ss_pred             ccccCCCCCCcEEEeeC
Q psy8029         119 KDIFKGTPQLESLNLRG  135 (693)
Q Consensus       119 ~~~~~~l~~L~~L~L~~  135 (693)
                      ...+..+++|+.|.+.+
T Consensus       169 L~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  169 LACLLKLKNLRRLHLYD  185 (221)
T ss_pred             HHHHHHhhhhHHHHhcC
Confidence            77777788888887764

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.31  E-value=0.22  Score=29.50  Aligned_cols=21  Identities=38%  Similarity=0.743  Sum_probs=10.7

Q ss_pred             CCCcEEEcCCCCCCccChhhh
Q psy8029         150 PKLQVLDLGSNDVAYMDPEIF  170 (693)
Q Consensus       150 ~~L~~L~Ls~n~l~~~~~~~~  170 (693)
                      ++|++|+|++|.++.+++.+|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555554444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.31  E-value=0.22  Score=29.50  Aligned_cols=21  Identities=38%  Similarity=0.743  Sum_probs=10.7

Q ss_pred             CCCcEEEcCCCCCCccChhhh
Q psy8029         150 PKLQVLDLGSNDVAYMDPEIF  170 (693)
Q Consensus       150 ~~L~~L~Ls~n~l~~~~~~~~  170 (693)
                      ++|++|+|++|.++.+++.+|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555554444

>KOG4308|consensus

Probab=91.23  E-value=0.0049  Score=66.41  Aligned_cols=185  Identities=22%  Similarity=0.251  Sum_probs=131.8

Q ss_pred             CccEEEEEcCCCCCccHHHHhhhc-CcccccEEEeecCCCCccCCCC----ccCCCc-ccccEEEccCCcCcccccc---
Q psy8029          49 PFNAVTFTFCPLPDENFISLFSKL-NITTINTLAFSNSPSNVGVLSP----PYFDGL-HFVKHILLSHNKEITGLHK---  119 (693)
Q Consensus        49 ~l~~L~l~~c~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~i~~l~~----~~~~~l-~~L~~L~Ls~n~~i~~~~~---  119 (693)
                      .+..+.+.+|.+.+.+...+...+ ...+|+.|+++++  .+..-..    ..+... ..+++|++..| .++....   
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n--~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l  164 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGN--NLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPL  164 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccC--CCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHH
Confidence            378899999999999888887665 4778999999998  7762221    223333 56788888888 7776432   


Q ss_pred             -cccCCCCCCcEEEeeCCcccc-----cC---cccCCCCCCCcEEEcCCCCCCccC----hhhhCCCCC-CCEEEccCCC
Q psy8029         120 -DIFKGTPQLESLNLRGNSITE-----LY---SGVFQYVPKLQVLDLGSNDVAYMD----PEIFKNLTS-LRILNLDHNQ  185 (693)
Q Consensus       120 -~~~~~l~~L~~L~L~~n~i~~-----~~---~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~-L~~L~L~~n~  185 (693)
                       ..+.....++.++++.|.+..     ++   ...+....++++|.+++|.++...    ...+...+. ++.+++..|+
T Consensus       165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~  244 (478)
T KOG4308|consen  165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK  244 (478)
T ss_pred             HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence             334558899999999998743     11   112335778999999999877322    234455566 7889999999


Q ss_pred             CCCCCh----hhcCCC-CCCcEEECcCCCCCcCCC----CcCCCCCCCcEEEcCCCcccc
Q psy8029         186 LINLTR----AIFNNV-PNLRSLDISGNNISILPS----GVFSDLRKLQTFYANSNRFQM  236 (693)
Q Consensus       186 l~~~~~----~~~~~l-~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~  236 (693)
                      +.+...    ..+..+ ..+++++++.|.|+.-..    ..+..++.++.+.++.|.+..
T Consensus       245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            885422    334555 678999999999985443    234567899999999998874

>smart00013 LRRNT Leucine rich repeat N-terminal domain

Probab=90.78  E-value=0.26  Score=31.24  Aligned_cols=29  Identities=45%  Similarity=0.893  Sum_probs=24.9

Q ss_pred             CCCCcEeeecCCCceEEEEcCCCCcccCCCCCCCC
Q psy8029         574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVT  608 (693)
Q Consensus       574 cp~~~~~~~~~~~~l~~l~ls~n~l~~ip~~~~~l  608 (693)
                      ||..|.|.      ...++|++.+|+++|..++..
T Consensus         2 CP~~C~C~------~~~V~C~~~~L~~vP~~iP~~   30 (33)
T smart00013        2 CPAPCNCS------GTAVDCSGRGLTEVPLDLPPD   30 (33)
T ss_pred             cCCCCEEC------CCEeEeCCCCcCccCCCCCcc
Confidence            89999998      357999999999999987653

>KOG0473|consensus

Probab=85.49  E-value=0.017  Score=54.04  Aligned_cols=84  Identities=15%  Similarity=0.224  Sum_probs=36.5

Q ss_pred             CCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcE
Q psy8029         123 KGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRS  202 (693)
Q Consensus       123 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  202 (693)
                      ....+.+.||++.|++..+... |+.++.|+.|+++.|.+...+.+ +.....++.+++..|..+..+. .++..+++++
T Consensus        39 ~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~p~-s~~k~~~~k~  115 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQPK-SQKKEPHPKK  115 (326)
T ss_pred             hccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhCCc-cccccCCcch
Confidence            3334444455554444443332 34444455555554444433322 3444444444444444443332 2344444444


Q ss_pred             EECcCCC
Q psy8029         203 LDISGNN  209 (693)
Q Consensus       203 L~L~~n~  209 (693)
                      +++..+.
T Consensus       116 ~e~k~~~  122 (326)
T KOG0473|consen  116 NEQKKTE  122 (326)
T ss_pred             hhhccCc
Confidence            4444443

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=84.50  E-value=0.59  Score=27.53  Aligned_cols=17  Identities=18%  Similarity=0.431  Sum_probs=12.0

Q ss_pred             cCcEEEccCCccccccC
Q psy8029         639 LITDLDLSYNNISHVDT  655 (693)
Q Consensus       639 ~L~~L~Ls~N~l~~i~~  655 (693)
                      +|+.|+.++|+|+++|.
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            46677777777777765

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.95  E-value=0.39  Score=27.72  Aligned_cols=16  Identities=50%  Similarity=0.634  Sum_probs=6.9

Q ss_pred             CCCcEEECCCCCCCcC
Q psy8029         419 VNLETINLSYNRISSL  434 (693)
Q Consensus       419 ~~L~~L~Ls~n~l~~~  434 (693)
                      ++|++|+|++|.|++.
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            4455555555554443

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=83.94  E-value=0.81  Score=27.11  Aligned_cols=16  Identities=38%  Similarity=0.586  Sum_probs=9.2

Q ss_pred             ccCcEEEccCCccccc
Q psy8029         638 KLITDLDLSYNNISHV  653 (693)
Q Consensus       638 ~~L~~L~Ls~N~l~~i  653 (693)
                      ++|+.|+|++|+|+.|
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            4556666666666544

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=83.06  E-value=0.61  Score=27.47  Aligned_cols=19  Identities=16%  Similarity=0.170  Sum_probs=17.0

Q ss_pred             CCCccEEEeeCCceeEecC
Q psy8029         657 YPYLNHLELIDSEKIICHG  675 (693)
Q Consensus       657 ~~~L~~L~l~~N~l~~~~~  675 (693)
                      +.+|+.|++++|++++++.
T Consensus         1 P~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        1 PPSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             CcccceeecCCCccccCcc
Confidence            4689999999999999886

>KOG0473|consensus

Probab=83.03  E-value=0.039  Score=51.76  Aligned_cols=81  Identities=19%  Similarity=0.085  Sum_probs=35.3

Q ss_pred             ccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEE
Q psy8029         101 HFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILN  180 (693)
Q Consensus       101 ~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  180 (693)
                      ...+.||++.| .+...... |+-++.|..|+++.|.+..+|.+ |.....++.+++..|..+..+. .+...+++++++
T Consensus        42 kr~tvld~~s~-r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~p~-s~~k~~~~k~~e  117 (326)
T KOG0473|consen   42 KRVTVLDLSSN-RLVNLGKN-FSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQPK-SQKKEPHPKKNE  117 (326)
T ss_pred             ceeeeehhhhh-HHHhhccc-hHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhCCc-cccccCCcchhh
Confidence            34444444444 33333322 33344444444444444444433 3444444444444444433322 244455555555


Q ss_pred             ccCCC
Q psy8029         181 LDHNQ  185 (693)
Q Consensus       181 L~~n~  185 (693)
                      +-++.
T Consensus       118 ~k~~~  122 (326)
T KOG0473|consen  118 QKKTE  122 (326)
T ss_pred             hccCc
Confidence            54444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	693
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		6e-21
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-11
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		4e-18
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		3e-17
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		5e-08
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		4e-17
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		4e-08
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		7e-17
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		1e-12
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		5e-07
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		8e-17
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		1e-12
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-07
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		4e-14
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-13
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		6e-13
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-10
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		5e-07
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		1e-13
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		3e-11
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		2e-13
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		2e-13
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		8e-13
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		2e-12
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		3e-12
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		7e-11
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		4e-12
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		9e-10
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		7e-05
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		1e-11
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		5e-11
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		1e-07
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		3e-04
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		5e-11
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		7e-08
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		1e-10
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		2e-10
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		2e-08
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		1e-10
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		2e-10
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		2e-08
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		2e-10
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		3e-05
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		4e-04
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		2e-10
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		3e-05
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		3e-04
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		3e-10
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		9e-05
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		4e-04
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		3e-10
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		2e-04
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		6e-04
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		3e-10
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		2e-04
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		4e-04
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		3e-10
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		4e-05
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		2e-04
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		3e-10
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		1e-04
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		8e-04
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		3e-10
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		4e-05
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		2e-04
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		3e-10
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		1e-04
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		6e-04
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		3e-10
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		1e-04
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		6e-04
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		9e-10
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		9e-08
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		9e-06
4arn_A	279	Crystal Structure Of The N-terminal Domain Of Droso		4e-09
4arn_A	279	Crystal Structure Of The N-terminal Domain Of Droso		5e-06
4arn_A	279	Crystal Structure Of The N-terminal Domain Of Droso		5e-05
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		5e-09
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		4e-06
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		6e-09
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		2e-07
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		2e-08
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-08
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-08
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		2e-08
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		1e-05
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		2e-08
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-08
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		3e-08
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		3e-08
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		1e-05
3v44_A	407	Crystal Structure Of The N-Terminal Fragment Of Zeb		3e-08
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		6e-08
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		6e-08
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		7e-05
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		6e-08
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		2e-04
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		7e-08
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		8e-07
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		5e-04
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		7e-08
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		1e-06
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		6e-04
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		9e-08
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-07
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		1e-07
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		1e-07
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		1e-07
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		1e-07
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		1e-07
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		2e-07
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		9e-06
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		2e-07
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		2e-07
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		2e-07
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		2e-07
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		2e-07
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		9e-06
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		3e-07
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		3e-07
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		3e-07
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		4e-07
3twi_D	179	Variable Lymphocyte Receptor Recognition Of The Imm		1e-06
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		2e-06
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		5e-06
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		2e-05
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		7e-06
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		8e-06
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		8e-06
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		2e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		9e-06
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		2e-04
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		2e-05
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		2e-04
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		2e-05
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		2e-05
4ay9_X	350	Structure Of Follicle-Stimulating Hormone In Comple		2e-05
2z7x_B	520	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		2e-05
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		3e-05
1xwd_C	252	Crystal Structure Of Human Follicle Stimulating Hor		9e-05
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		1e-04
3g06_A	622	The Salmonella Virulence Effector Ssph2 Functions A		2e-04
4eco_A	636	Crystal Structure Of A Hypothetical Protein (Bacegg		3e-04
3oja_A	487	Crystal Structure Of Lrim1APL1C COMPLEX Length = 48		5e-04
3o53_A	317	Crystal Structure Of Lrim1 Leucine-Rich Repeat Doma		6e-04

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 97/170 (57%), Gaps = 4/170 (2%)
Query: 192 AIFNNVP-NLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQV 250
           AI +N+P + + LD+  N +S LPS  F  L KL+  Y N N+ Q  P  +F E+K L+ 
Sbjct: 30  AIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET 89
Query: 251 IKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT 310
           + ++ +K  L+ LP G+F  L  L  + L  + +  LP  +F + T +T + L G+ +L 
Sbjct: 90  LWVTDNK--LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL-GYNELQ 146
Query: 311 SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 360
           SLP  +F     L +L L  N+LK +PE  F+ L EL TL L NNQL+ +
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 118/268 (44%), Gaps = 39/268 (14%)
Query: 297 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 356
           N  N V    KKLT++PS +  D KKL   +LQ NKL  LP   F  L +L  L L +N+
Sbjct: 16  NNKNSVDCSSKKLTAIPSNIPADTKKL---DLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72
Query: 357 LENITSLV--GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLL------TFDEY 408
           L+ + + +   L  L +L ++ N+L+ + +  FD L +L  + L  N L       FD  
Sbjct: 73  LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132
Query: 409 QYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSN 468
                       L  ++L YN + SL       +TSLKEL L +N    +P+     ++ 
Sbjct: 133 ----------TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182
Query: 469 KLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIR 528
             TL L  NQ+         +   A D  E   M+        L +NP  C C+    I 
Sbjct: 183 LKTLKLDNNQLK-------RVPEGAFDSLEKLKMLQ-------LQENPWDCTCNG---II 225
Query: 529 FVSKKMTKTVYQMLELV-TDNLECFGNA 555
           +++K + K   + L  V T   E  G A
Sbjct: 226 YMAKWLKKKADEGLGGVDTAGCEKGGKA 253

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 130/248 (52%), Gaps = 11/248 (4%)
Query: 209 NISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLF 268
            +S +P G+ S+ R L       N  QM   D F  + +L+V+++   ++S++++  G F
Sbjct: 65  GLSEVPQGIPSNTRYLNLM---ENNIQMIQADTFRHLHHLEVLQLG--RNSIRQIEVGAF 119
Query: 269 ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL 328
             L  LNT+ L ++ +  +PS  F   + +  + L  +  + S+PS  F     L++L+L
Sbjct: 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR-NNPIESIPSYAFNRVPSLMRLDL 178
Query: 329 -QRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAF 387
            +  KL+Y+ E  FE L  L  LNL    ++++ +L  L GL  L++S N   +I   +F
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSF 238
Query: 388 DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKE 447
            GLSSL  + + ++ ++  E +  +  L   V L   NL++N +SSL  D  + +  L E
Sbjct: 239 HGLSSLKKLWVMNSQVSLIE-RNAFDGLASLVEL---NLAHNNLSSLPHDLFTPLRYLVE 294
Query: 448 LDLRHNNF 455
           L L HN +
Sbjct: 295 LHLHHNPW 302

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 122/225 (54%), Gaps = 8/225 (3%)
Query: 232 NRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDL 291
           N  Q+   D F  +++L+++++S  K+ ++++  G F  LP LNT+ L ++ +  +P+  
Sbjct: 45  NSIQVIRTDTFKHLRHLEILQLS--KNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQA 102
Query: 292 FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL-QRNKLKYLPENLFESLKELYTL 350
           F   + +  + L  +  + S+PS  F     L +L+L +  +L+Y+ E  FE L  L  L
Sbjct: 103 FEYLSKLRELWLR-NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYL 161
Query: 351 NLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQY 410
           NL    L++I +L  L  L  L+LS N+L+ I   +F GL+SL  + L H  +   E + 
Sbjct: 162 NLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIE-RN 220
Query: 411 GYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
            +  LK   +LE +NLS+N + SL  D  + +  L+ + L HN +
Sbjct: 221 AFDDLK---SLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPW 262

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 121/277 (43%), Gaps = 29/277 (10%)
Query: 249 QVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKK 308
           Q  ++   +  L E+P+ +  N   LN   L E+SI  + +D F +  ++  I+      
Sbjct: 15  QASRVICTRRELAEVPASIPVNTRYLN---LQENSIQVIRTDTFKHLRHL-EILQLSKNL 70
Query: 309 LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GL 366
           +  +    F     L  LEL  N+L  +P   FE L +L  L L+NN +E+I S     +
Sbjct: 71  VRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRV 130
Query: 367 SGLNSLDLS-WNQLEQINLIAFDGLSSLNTVDLSH-NLLTFDEYQYGYSPLKQCVNLETI 424
             L  LDL    +LE I+  AF+GL +L  ++L   NL            L   V LE +
Sbjct: 131 PSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN-------LTALVRLEEL 183
Query: 425 NLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDL 484
            LS NR+  +       +TSL++L L H   + I       + +   L+LS N +  +  
Sbjct: 184 ELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSL-- 241
Query: 485 RTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNC 521
                      P++  T + R    V LN NP  CNC
Sbjct: 242 -----------PHDLFTPLHRLER-VHLNHNPWHCNC 266

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 125/233 (53%), Gaps = 10/233 (4%)
Query: 226 TFYAN--SNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS 283
           T Y N   N  Q+   D F  +++L+++++S  K+ ++++  G F  LP LNT+ L ++ 
Sbjct: 37  TRYLNLQENSIQVIRTDTFKHLRHLEILQLS--KNLVRKIEVGAFNGLPSLNTLELFDNR 94
Query: 284 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL-QRNKLKYLPENLFE 342
           +  +P+  F   + +  + L  +  + S+PS  F     L +L+L +  +L+Y+ E  FE
Sbjct: 95  LTTVPTQAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFE 153
Query: 343 SLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNL 402
            L  L  LNL    L++I +L  L  L  L+LS N+L+ I   +F GL+SL  + L H  
Sbjct: 154 GLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQ 213
Query: 403 LTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
           +   E +  +  LK   +LE +NLS+N + SL  D  + +  L+ + L HN +
Sbjct: 214 VATIE-RNAFDDLK---SLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPW 262

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 120/276 (43%), Gaps = 27/276 (9%)
Query: 249 QVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKK 308
           Q  ++   +  L E+P+ +  N   LN   L E+SI  + +D F +  ++  I+      
Sbjct: 15  QASRVICTRRELAEVPASIPVNTRYLN---LQENSIQVIRTDTFKHLRHL-EILQLSKNL 70
Query: 309 LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GL 366
           +  +    F     L  LEL  N+L  +P   FE L +L  L L+NN +E+I S     +
Sbjct: 71  VRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRV 130
Query: 367 SGLNSLDLS-WNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETIN 425
             L  LDL    +LE I+  AF+GL +L  ++L    L           L   V LE + 
Sbjct: 131 PSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLK------DIPNLTALVRLEELE 184
Query: 426 LSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLR 485
           LS NR+  +       +TSL++L L H   + I       + +   L+LS N +  +   
Sbjct: 185 LSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSL--- 241
Query: 486 TLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNC 521
                     P++  T + R    V LN NP  CNC
Sbjct: 242 ----------PHDLFTPLHRLER-VHLNHNPWHCNC 266

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 2/151 (1%)
Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
           E L+L+   +  L    F+ + KL  L+L  N +  +   +F +LT L  L L +NQL +
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYL 248
           L   +F+++  L  L + GN +  LPSGVF  L KL+    N+N+ Q  P   F ++  L
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 249 QVIKISYHKDSLKELPSGLFANLPLLNTVIL 279
           Q + +S ++  L+ +P G F  L  L T+ L
Sbjct: 158 QTLSLSTNQ--LQSVPHGAFDRLGKLQTITL 186

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 6/160 (3%)
Query: 201 RSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSL 260
           + +D  G ++  +PSG+ +D  KL      S          F  +  L  + + Y++  L
Sbjct: 17  KEVDCQGKSLDSVPSGIPADTEKLD---LQSTGLATLSDATFRGLTKLTWLNLDYNQ--L 71
Query: 261 KELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC 320
           + L +G+F +L  L T+ L  + +A LP  +F + T +  + L G++ L SLPS +F   
Sbjct: 72  QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRL 130
Query: 321 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 360
            KL +L L  N+L+ +P   F+ L  L TL+L  NQL+++
Sbjct: 131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 107/252 (42%), Gaps = 53/252 (21%)
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-- 364
           K L S+PS +  D +KL   +LQ   L  L +  F  L +L  LNL  NQL+ +++ V  
Sbjct: 24  KSLDSVPSGIPADTEKL---DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80
Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI 424
            L+ L +L L+ NQL  + L  FD L+                             L+ +
Sbjct: 81  DLTELGTLGLANNQLASLPLGVFDHLT----------------------------QLDKL 112
Query: 425 NLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIV-- 482
            L  N++ SL       +T LKEL L  N    IP      ++N  TL LS NQ+  V  
Sbjct: 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172
Query: 483 -------DLRTLEIKAAAQDPNEDSTM-----VARSANIVI------LNDNPIACNCSNY 524
                   L+T+ +     D +   T+     +  ++N V       L+++P    CS+ 
Sbjct: 173 GAFDRLGKLQTITLFGNQFDCSRCETLYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDG 232
Query: 525 DLIRFVSKKMTK 536
            ++R V+ +  K
Sbjct: 233 KVVRTVTNETLK 244

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 85.9 bits (211), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 2/151 (1%)
Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
           E L+L+   +  L    F+ + KL  L+L  N +  +   +F +LT L  L L +NQL +
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYL 248
           L   +F+++  L  L + GN +  LPSGVF  L KL+    N+N+ Q  P   F ++  L
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 249 QVIKISYHKDSLKELPSGLFANLPLLNTVIL 279
           Q + +S ++  L+ +P G F  L  L T+ L
Sbjct: 158 QTLSLSTNQ--LQSVPHGAFDRLGKLQTITL 186

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 6/160 (3%)
Query: 201 RSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSL 260
           + +D  G ++  +PSG+ +D  KL      S          F  +  L  + + Y++  L
Sbjct: 17  KEVDCQGKSLDSVPSGIPADTEKLD---LQSTGLATLSDATFRGLTKLTWLNLDYNQ--L 71
Query: 261 KELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC 320
           + L +G+F +L  L T+ L  + +A LP  +F + T +  + L G++ L SLPS +F   
Sbjct: 72  QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRL 130
Query: 321 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 360
            KL +L L  N+L+ +P   F+ L  L TL+L  NQL+++
Sbjct: 131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 103/253 (40%), Gaps = 55/253 (21%)
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-- 364
           K L S+PS +  D +KL   +LQ   L  L +  F  L +L  LNL  NQL+ +++ V  
Sbjct: 24  KSLDSVPSGIPADTEKL---DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80
Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI 424
            L+ L +L L+ NQL  + L  FD L+                             L+ +
Sbjct: 81  DLTELGTLGLANNQLASLPLGVFDHLT----------------------------QLDKL 112
Query: 425 NLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIV-- 482
            L  N++ SL       +T LKEL L  N    IP      ++N  TL LS NQ+  V  
Sbjct: 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172
Query: 483 -------------------DLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSN 523
                              D    EI   +Q   E+S  V +      L+++P    CS+
Sbjct: 173 GAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKV-KDGTGQNLHESPDGVTCSD 231
Query: 524 YDLIRFVSKKMTK 536
             ++R V+ +  K
Sbjct: 232 GKVVRTVTNETLK 244

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 149/334 (44%), Gaps = 57/334 (17%)
Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
           Q+E LNL    I E+ +  F Y   +Q L +G N + Y+ P +F+N+  L +L L+ N L
Sbjct: 70  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129
Query: 187 INLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
            +L R IF+N P L +L +S NN+  +    F     LQ    +SNR             
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT----------- 178
Query: 247 YLQVIKISYHKDSLKELPSGLFANLP--LLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
                    H D L  +PS   AN+   LL+T+ +    IA    D   NS N    V+ 
Sbjct: 179 ---------HVD-LSLIPSLFHANVSYNLLSTLAI---PIAVEELDASHNSIN----VVR 221
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--S 362
           G       P  +     +L  L+LQ N L         +   L  ++L  N+LE I    
Sbjct: 222 G-------PVNV-----ELTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNELEKIMYHP 267
Query: 363 LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNL 421
            V +  L  L +S N+L  +NL     + +L  +DLSHN LL  +  Q       Q   L
Sbjct: 268 FVKMQRLERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLHVERNQ------PQFDRL 320
Query: 422 ETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
           E + L +N I +L    +S+  +LK L L HN++
Sbjct: 321 ENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDW 351

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 103 VKHILLSHNKEITGLHK-DIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSND 161
           V+++ L  NK    LH     K    L  L L GN +  L +GVF  +  L+ L L  N 
Sbjct: 65  VRYLALGGNK----LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 162 VAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDL 221
           +  +   +F  LT+L  LNL HNQL +L + +F+ + NL  LD+S N +  LP GVF  L
Sbjct: 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180
Query: 222 RKLQTFYANSNRFQMFPKDLFAEMKYLQVI 251
            +L+      N+ +  P  +F  +  LQ I
Sbjct: 181 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 146 FQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDI 205
            QY+P ++ L LG N +   D    K LT+L  L L  NQL +L   +F+ + NL+ L +
Sbjct: 59  IQYLPNVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 206 SGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPS 265
             N +  LP GVF  L  L       N+ Q  PK +F ++  L  + +SY++  L+ LP 
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ--LQSLPE 174
Query: 266 GLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVL 303
           G+F  L  L  + L ++ +  +P  +F   T++  I L
Sbjct: 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 212

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 258 DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 317
           + L+ LP+G+F  L  L  ++L E+ +  LP  +F   TN+T + L  H +L SLP  +F
Sbjct: 95  NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL-AHNQLQSLPKGVF 153
Query: 318 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSW 376
                L +L+L  N+L+ LPE +F+ L +L  L L  NQL+++   V    L SL   W
Sbjct: 154 DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV-FDRLTSLQYIW 211

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 135/348 (38%), Gaps = 103/348 (29%)
Query: 235 QMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWN 294
           Q+FP D FAE      IK +  K S+ +  +     L  ++ +I   S I  +    +  
Sbjct: 11  QIFPDDAFAE-----TIKANLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQYL- 62
Query: 295 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 354
             N+  + L G+K L  + +   ++   L  L L  N+L+ LP  +F+ L  L  L L  
Sbjct: 63  -PNVRYLALGGNK-LHDISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 355 NQLENITSLV--GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGY 412
           NQL+++   V   L+ L  L+L+ NQL+ +    FD L+                     
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT--------------------- 157
Query: 413 SPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTL 472
                  NL  ++LSYN++ SL +     +T LK+L L  N    +PD     V ++LT 
Sbjct: 158 -------NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG----VFDRLT- 205
Query: 473 DLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSK 532
                                            S   + L+DNP  C C     IR++S+
Sbjct: 206 ---------------------------------SLQYIWLHDNPWDCTCPG---IRYLSE 229
Query: 533 KMTKTVYQMLELVTDNLECFGNAGVGIN---SVRPENLTCDTKPCPAR 577
            + K                 ++GV  N   SV P++  C     P R
Sbjct: 230 WINK-----------------HSGVVRNSAGSVAPDSAKCSGSGKPVR 260

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 135/305 (44%), Gaps = 23/305 (7%)
Query: 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN 172
            I  L++D F   P LE L L  N ++ +  G F  +  L+ L L SN +  +   +F  
Sbjct: 43  RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG 102
Query: 173 LTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN 232
           L++L  L++  N+++ L   +F ++ NL+SL++  N++  +    FS L  L+       
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162
Query: 233 RFQMFPKDLFAEMKYLQVIKIS---------YHKDSLKELPSGLFANLPLLNTVILGESS 283
                P +  + +  L V+++          Y    L  L     ++ P L+T+      
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT----- 217
Query: 284 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 343
               P+ L+    N+T++ +T H  LT++P    R    L  L L  N +  +  ++   
Sbjct: 218 ----PNCLY--GLNLTSLSIT-HCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270
Query: 344 LKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
           L  L  + L   QL  +   +  GL+ L  L++S NQL  +    F  + +L T+ L  N
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
Query: 402 LLTFD 406
            L  D
Sbjct: 331 PLACD 335

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 151/351 (43%), Gaps = 49/351 (13%)
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
           T  R+L+L  N++  L +  F + P+L  L+++ N +S +  G F++L  L+T    SNR
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFW 293
                                     LK +P G+F  L  L  + + E+ I  L   +F 
Sbjct: 92  --------------------------LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ 125
Query: 294 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 353
           +  N+ ++ + G   L  +    F     L +L L++  L  +P      L  L  L L+
Sbjct: 126 DLYNLKSLEV-GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184
Query: 354 NNQLENIT--SLVGLSGLNSLDLS-WNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQY 410
           +  +  I   S   L  L  L++S W  L+ +      GL+ L ++ ++H  LT      
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLT----AV 239
Query: 411 GYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKL 470
            Y  ++  V L  +NLSYN IS++    +  +  L+E+ L     + +       ++   
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299
Query: 471 TLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNC 521
            L++S NQ     L TLE        N ++         +IL+ NP+AC+C
Sbjct: 300 VLNVSGNQ-----LTTLEESVFHSVGNLET---------LILDSNPLACDC 336

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 150/334 (44%), Gaps = 57/334 (17%)
Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
           Q+E LNL    I E+ +  F Y   +Q L +G N + Y+ P +F+N+  L +L L+ N L
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135
Query: 187 INLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
            +L R IF+N P L +L +S NN+  +    F     LQ    +SNR             
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT----------- 184
Query: 247 YLQVIKISYHKDSLKELPSGLFANLP--LLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
                    H D L  +PS   AN+   LL+T+ +    IA    D   NS N    V+ 
Sbjct: 185 ---------HVD-LSLIPSLFHANVSYNLLSTLAI---PIAVEELDASHNSIN----VVR 227
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--S 362
           G       P  +     +L  L+LQ N L      L  +   L  ++L  N+LE I    
Sbjct: 228 G-------PVNV-----ELTILKLQHNNLTDTAWLL--NYPGLVEVDLSYNELEKIMYHP 273
Query: 363 LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNL 421
            V +  L  L +S N+L  +NL     + +L  +DLSHN LL  +  Q  +        L
Sbjct: 274 FVKMQRLERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLHVERNQPQFD------RL 326
Query: 422 ETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
           E + L +N I +L    +S+  +LK L L HN++
Sbjct: 327 ENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDW 357

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 124/248 (50%), Gaps = 11/248 (4%)
Query: 209 NISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLF 268
           N+  +P G+ ++ R L     + N+ Q+   + F  +++L+++++S  ++ ++ +  G F
Sbjct: 54  NLREVPDGISTNTRLLNL---HENQIQIIKVNSFKHLRHLEILQLS--RNHIRTIEIGAF 108
Query: 269 ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL 328
             L  LNT+ L ++ +  +P+  F   + +  + L  +  + S+PS  F     L +L+L
Sbjct: 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR-NNPIESIPSYAFNRIPSLRRLDL 167
Query: 329 -QRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAF 387
            +  +L Y+ E  FE L  L  LNL    L  I +L  L  L+ LDLS N L  I   +F
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSF 227
Query: 388 DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKE 447
            GL  L  + +  + +   E +  +  L+  V    INL++N ++ L  D  + +  L+ 
Sbjct: 228 QGLMHLQKLWMIQSQIQVIE-RNAFDNLQSLVE---INLAHNNLTLLPHDLFTPLHHLER 283
Query: 448 LDLRHNNF 455
           + L HN +
Sbjct: 284 IHLHHNPW 291

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 178/398 (44%), Gaps = 40/398 (10%)
Query: 111 NKEITGLHKDIFKGTP--QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPE 168
           N ++    +  F G     L  L+L  N++ ++ +G F Y+P L+ L L  N++  + P 
Sbjct: 231 NNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPR 290
Query: 169 IFKNLTSLRILNLDH---NQLINLTRA------IFNNVPNLRSLDISGNNISILPSGVFS 219
            F  L++LR L+L      Q ++L          F  +  L  L++  NNI    S  F+
Sbjct: 291 SFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFT 350
Query: 220 DLRKLQ--TFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTV 277
            L  L+  +        Q    + F  + +  ++ ++  K+ + ++ +G F+ L  L  +
Sbjct: 351 GLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRIL 410
Query: 278 ILGESSIAELPSDLFWNS-TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY- 335
            LG + I +  S   W    NI  I L+ +K L  L ++ F     L +L L+R  LK  
Sbjct: 411 DLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYL-QLSTSSFALVPSLQRLMLRRVALKNV 469
Query: 336 -LPENLFESLKELYTLNLKNNQLENITS--LVGLSGLNSLDLSWNQLEQINLIA------ 386
            +  + F  L+ L  L+L NN + NI    L GL  L  LD   N L ++   A      
Sbjct: 470 DISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPV 529
Query: 387 --FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISS----LFDDWIS 440
               GLS L+ ++L  N L  DE   G    K    L++INL  N ++     +FDD   
Sbjct: 530 NFLKGLSHLHILNLESNGL--DEIPVGV--FKNLFELKSINLGLNNLNKLEPFIFDD--- 582
Query: 441 SMTSLKELDLRHNNFSFI-PDQLDSIVSNKLTLDLSFN 477
             TSL+ L+L+ N  + +  D       N  +LD+ FN
Sbjct: 583 -QTSLRSLNLQKNLITSVEKDVFGPPFQNLNSLDMRFN 619

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 189/422 (44%), Gaps = 67/422 (15%)
Query: 121 IFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI-- 178
           IFKG        L+ ++I  L+ G F+        D+   D++   P +F+ L  + +  
Sbjct: 218 IFKG--------LKNSTIQSLWLGTFE--------DMDDEDIS---PAVFEGLCEMSVES 258
Query: 179 LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP 238
           +NL  +   N++   F+    L+ LD++  ++S LPSG+   L  L+    ++N+F+   
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVG-LSTLKKLVLSANKFENLC 317
Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI--AELPSDLFWNST 296
           +   +    L  + I  +   L EL +G   NL  L  + L    I  ++  +    N +
Sbjct: 318 QISASNFPSLTHLSIKGNTKRL-ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376
Query: 297 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYL-PENLFESLKELYTLNLKNN 355
           ++ ++ L+ ++ L SL +  F++C +L  L+L   +LK    ++ F++L  L  LNL ++
Sbjct: 377 HLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435
Query: 356 QLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPL 415
            L               D+S  QL       FDGL +L  ++L  N       Q   S L
Sbjct: 436 LL---------------DISSEQL-------FDGLPALQHLNLQGNHFPKGNIQKTNS-L 472
Query: 416 KQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNK-LTLDL 474
           +    LE + LS+  +SS+     +S+  +  +DL HN  +     ++++   K + L+L
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT--SSSIEALSHLKGIYLNL 530
Query: 475 SFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKM 534
           + N I+I+    L I +  +  N              L  NP+ C CSN   + +  + M
Sbjct: 531 ASNHISIILPSLLPILSQQRTIN--------------LRQNPLDCTCSNIYFLEWYKENM 576
Query: 535 TK 536
            K
Sbjct: 577 QK 578

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 5/147 (3%)
Query: 103 VKHILLSHNKEITGLHK-DIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSND 161
           V+++ L  NK    LH     K    L  L L GN +  L +GVF  +  L+ L L  N 
Sbjct: 65  VRYLALGGNK----LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 162 VAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDL 221
           +  +   +F  LT+L  L L HNQL +L + +F+ + NL  LD+  N +  LP GVF  L
Sbjct: 121 LQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKL 180
Query: 222 RKLQTFYANSNRFQMFPKDLFAEMKYL 248
            +L+    N N+ +  P  +F  +  L
Sbjct: 181 TQLKQLSLNDNQLKSVPDGVFDRLTSL 207

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 18/223 (8%)
Query: 235 QMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWN 294
           Q+FP D FAE      IK +  K S+ +  +     L  ++ +I   S I  +    +  
Sbjct: 11  QIFPDDAFAE-----TIKANLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQYL- 62
Query: 295 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 354
             N+  + L G+K L  + +   ++   L  L L  N+L+ LP  +F+ L  L  L L  
Sbjct: 63  -PNVRYLALGGNK-LHDISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 355 NQLENITSLV--GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGY 412
           NQL+++   V   L+ L  L L  NQL+ +    FD L++L  +DL +N L         
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ----SLPE 174
Query: 413 SPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
               +   L+ ++L+ N++ S+ D     +TSL  + L +N +
Sbjct: 175 GVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPW 217

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 1/129 (0%)
Query: 124 GTP-QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD 182
           G P Q   L+L  NS+  L +GVF  +  L  L LG N +  +   +F  LTSL  LNL 
Sbjct: 25  GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84
Query: 183 HNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLF 242
            NQL +L   +F+ +  L+ L ++ N +  LP GVF  L +L+      N+ +  P  +F
Sbjct: 85  TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144
Query: 243 AEMKYLQVI 251
             +  LQ I
Sbjct: 145 DRLTSLQYI 153

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 7/139 (5%)
Query: 238 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 297
           P  + A+  YL +       +SLK LP+G+F  L  L  + LG + +  LP+ +F   T+
Sbjct: 23  PTGIPAQTTYLDL-----ETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77
Query: 298 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 357
           +T + L+ + +L SLP+ +F    +L +L L  N+L+ LP+ +F+ L +L  L L  NQL
Sbjct: 78  LTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Query: 358 ENITSLVGLSGLNSLDLSW 376
           +++   V    L SL   W
Sbjct: 137 KSVPDGV-FDRLTSLQYIW 154

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 30/137 (21%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQIN 383
           L+L+ N LK LP  +F+ L  L  L L  N+L+++ + V   L+ L  L+LS NQL+ + 
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 384 LIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMT 443
              FD L+                             L+ + L+ N++ SL D     +T
Sbjct: 93  NGVFDKLT----------------------------QLKELALNTNQLQSLPDGVFDKLT 124
Query: 444 SLKELDLRHNNFSFIPD 460
            LK+L L  N    +PD
Sbjct: 125 QLKDLRLYQNQLKSVPD 141

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 166/384 (43%), Gaps = 51/384 (13%)
Query: 116 GLHKDIFKGTPQLES----LNLRGNSITELYSGVFQYVPKLQVLDLGSNDVA-YMDPEIF 170
           GLH+      P+L +    ++L  NSI EL    F  +  LQ L +        +    F
Sbjct: 21  GLHQ-----VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75
Query: 171 KNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI--SILPSGVFSDLRKLQTFY 228
           + L+SL IL LD+NQ + L    FN + NL  L ++  N+  ++L    F  L  L+   
Sbjct: 76  RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV 135
Query: 229 ANSNRFQMF-PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
              N  +   P   F  M+   V+ ++++K  +K +      N    +  +L  SSI   
Sbjct: 136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNK--VKSICEEDLLNFQGKHFTLLRLSSITLQ 193
Query: 288 PSDLFW----------NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE---------- 327
             + +W           +T+IT + L+G+    S+    F D     K++          
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF-DAIAGTKIQSLILSNSYNM 252
Query: 328 ---LQRNKLKYLPENL-FESLKE--LYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQL 379
                    K  P+N  F+ L+   + T +L  +++  +   V    + L  L L+ N++
Sbjct: 253 GSSFGHTNFKD-PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311
Query: 380 EQINLIAFDGLSSLNTVDLSHNLL-TFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
            +I+  AF GL+ L  ++LS N L + D   +     +    LE ++LSYN I +L D  
Sbjct: 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF-----ENLDKLEVLDLSYNHIRALGDQS 366
Query: 439 ISSMTSLKELDLRHNNFSFIPDQL 462
              + +LKEL L  N    +PD +
Sbjct: 367 FLGLPNLKELALDTNQLKSVPDGI 390

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 157/346 (45%), Gaps = 48/346 (13%)
Query: 61  PDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKD 120
           PD+N    F+ L  +++  L  S+    V  L+   F+ L  +K + L++NK I  +  +
Sbjct: 255 PDQN---TFAGLARSSVRHLDLSHG--FVFSLNSRVFETLKDLKVLNLAYNK-INKIADE 308
Query: 121 IFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILN 180
            F G   L+ LNL  N + ELYS  F  +PK+  +DL  N +A +  + FK L  L+ L+
Sbjct: 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD 368
Query: 181 LDHNQLINLTRAIFNNVPNLRSLDISGNNISILPS-GVFSDLRKLQTFYANSNRFQMFPK 239
           L  N L  +     + +P++  + +SGN +  LP   + ++L  L     + NR +    
Sbjct: 369 LRDNALTTI-----HFIPSIPDIFLSGNKLVTLPKINLTANLIHL-----SENRLENLDI 418
Query: 240 DLF-AEMKYLQVIKIS---YHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 295
             F   + +LQ++ ++   +   S  + PS      P L  + LGE+ +      L W  
Sbjct: 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPS----ENPSLEQLFLGENML-----QLAWE- 468
Query: 296 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
                         T L   +F     L  L L  N L  LP  +F  L  L  L+L +N
Sbjct: 469 --------------TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514
Query: 356 QLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
           +L  ++     + L  LD+S NQL   N    D   SL+ +D++HN
Sbjct: 515 RLTVLSHNDLPANLEILDISRNQLLAPNP---DVFVSLSVLDITHN 557

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 155/349 (44%), Gaps = 44/349 (12%)
Query: 145 VFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN--LTRAIFNNVPNLRS 202
            F+ +P L++LDLGS+ + ++ P+ F+ L  L  L L    L +  L    F N+  L  
Sbjct: 68  AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 203 LDISGNNISIL---PSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDS 259
           LD+S N I  L   PS  F  L  L++   +SN+  +  +    E++ LQ   +S+   +
Sbjct: 128 LDLSKNQIRSLYLHPS--FGKLNSLKSIDFSSNQIFLVCEH---ELEPLQGKTLSFFSLA 182
Query: 260 LKELPSGL----------FANLPLLNTVILGESSIAELPSDLFWNS---TNITNIVLTGH 306
              L S +          F N+ L    + G     ++  + F N+   +   +++L  H
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN-FSNAISKSQAFSLILAHH 241
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGL 366
                      +D  +     L R+ +++L       L   +  +L +   E       L
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHL------DLSHGFVFSLNSRVFET------L 289
Query: 367 SGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL 426
             L  L+L++N++ +I   AF GL +L  ++LS+NLL  + Y   +  L +   +  I+L
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPK---VAYIDL 345
Query: 427 SYNRISSLFDDWISSMTSLKELDLRHNNFS---FIPDQLDSIVS-NKLT 471
             N I+ + D     +  L+ LDLR N  +   FIP   D  +S NKL 
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLV 394

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 358 ENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLL--TFDEYQYGYSPL 415
           +N  + +  S +  LDLS   +  +N   F+ L  L  ++L++N +    DE  YG    
Sbjct: 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD-- 314
Query: 416 KQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLS 475
               NL+ +NLSYN +  L+      +  +  +DL+ N+ + I DQ    +    TLDL 
Sbjct: 315 ----NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370
Query: 476 FNQIAIV 482
            N +  +
Sbjct: 371 DNALTTI 377

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 80/157 (50%)
Query: 97  FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
           F GL  ++ + LS N ++  +    F+G   L +L+L    + EL  G+F+ +  LQ L 
Sbjct: 75  FTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLY 134
Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSG 216
           L  N++  +    F++L +L  L L  N++ ++    F  + +L  L +  N+++ +   
Sbjct: 135 LQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPH 194
Query: 217 VFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKI 253
            F DL +L T Y  +N   M P ++   ++ LQ +++
Sbjct: 195 AFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRL 231

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 95/221 (42%), Gaps = 17/221 (7%)
Query: 325 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWN-QLEQ 381
           ++ L  N++ Y+P   F+S + L  L L +N L  I   +  GL+ L  LDLS N QL  
Sbjct: 35  RIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRV 94
Query: 382 INLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISS 441
           ++   F GL  L+T+ L    L     + G    +    L+ + L  N + +L D+    
Sbjct: 95  VDPTTFRGLGHLHTLHLDRCGLQ----ELGPGLFRGLAALQYLYLQDNNLQALPDNTFRD 150
Query: 442 MTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVD---------LRTLEIKAA 492
           + +L  L L  N    +P+     + +   L L  N +A V          L TL + A 
Sbjct: 151 LGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFAN 210
Query: 493 AQDPNEDSTMVA-RSANIVILNDNPIACNCSNYDLIRFVSK 532
                    +V  RS   + LNDNP  C+C    L  ++ K
Sbjct: 211 NLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQK 251

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 78/157 (49%)
Query: 97  FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
           F GL  ++ + LS N ++  +    F G  +L +L+L    + EL  G+F+ +  LQ L 
Sbjct: 75  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 134
Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSG 216
           L  N +  +  + F++L +L  L L  N++ ++    F  + +L  L +  N ++ +   
Sbjct: 135 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 194
Query: 217 VFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKI 253
            F DL +L T Y  +N     P +  A ++ LQ +++
Sbjct: 195 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 231

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 115/283 (40%), Gaps = 48/283 (16%)
Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN-NIS 211
           Q + L  N ++++    F+   +L IL L  N L  +  A F  +  L  LD+S N  + 
Sbjct: 34  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 212 ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANL 271
            +    F  L +L T + +                          +  L+EL  GLF  L
Sbjct: 94  SVDPATFHGLGRLHTLHLD--------------------------RCGLQELGPGLFRGL 127
Query: 272 PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN 331
             L  + L ++++  LP D F +  N+T++ L G  +++S+P   FR    L +L L +N
Sbjct: 128 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQN 186
Query: 332 KLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLS-------------W 376
           ++ ++  + F  L  L TL L  N L  +   +L  L  L  L L+             W
Sbjct: 187 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW 246
Query: 377 NQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCV 419
             L++     F G SS     L   L   D  +   + L+ C 
Sbjct: 247 AWLQK-----FRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 284

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 27/231 (11%)
Query: 308 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN-QLENI--TSLV 364
           +++ +P+  FR C+ L  L L  N L  +    F  L  L  L+L +N QL ++   +  
Sbjct: 42  RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 101
Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTF---DEYQYGYSPLKQCVNL 421
           GL  L++L L    L+++    F GL++L  + L  N L     D +       +   NL
Sbjct: 102 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF-------RDLGNL 154
Query: 422 ETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAI 481
             + L  NRISS+ +     + SL  L L  N  + +       +   +TL L  N ++ 
Sbjct: 155 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 214
Query: 482 VDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSK 532
           +             P E +    R+   + LNDNP  C+C    L  ++ K
Sbjct: 215 L-------------PTE-ALAPLRALQYLRLNDNPWVCDCRARPLWAWLQK 251

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 78/157 (49%)
Query: 97  FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
           F GL  ++ + LS N ++  +    F G  +L +L+L    + EL  G+F+ +  LQ L 
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135
Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSG 216
           L  N +  +  + F++L +L  L L  N++ ++    F  + +L  L +  N ++ +   
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195
Query: 217 VFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKI 253
            F DL +L T Y  +N     P +  A ++ LQ +++
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 115/283 (40%), Gaps = 48/283 (16%)
Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN-NIS 211
           Q + L  N ++++    F+   +L IL L  N L  +  A F  +  L  LD+S N  + 
Sbjct: 35  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 212 ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANL 271
            +    F  L +L T + +                          +  L+EL  GLF  L
Sbjct: 95  SVDPATFHGLGRLHTLHLD--------------------------RCGLQELGPGLFRGL 128
Query: 272 PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN 331
             L  + L ++++  LP D F +  N+T++ L G  +++S+P   FR    L +L L +N
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQN 187
Query: 332 KLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLS-------------W 376
           ++ ++  + F  L  L TL L  N L  +   +L  L  L  L L+             W
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW 247
Query: 377 NQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCV 419
             L++     F G SS     L   L   D  +   + L+ C 
Sbjct: 248 AWLQK-----FRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 102/239 (42%), Gaps = 28/239 (11%)
Query: 300 NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN-QLE 358
            I L G  +++ +P+  FR C+ L  L L  N L  +    F  L  L  L+L +N QL 
Sbjct: 36  RIFLHG-NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 359 NI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTF---DEYQYGYS 413
           ++   +  GL  L++L L    L+++    F GL++L  + L  N L     D +     
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF----- 149
Query: 414 PLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLD 473
             +   NL  + L  NRISS+ +     + SL  L L  N  + +       +   +TL 
Sbjct: 150 --RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 474 LSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSK 532
           L  N ++ +             P E +    R+   + LNDNP  C+C    L  ++ K
Sbjct: 208 LFANNLSAL-------------PTE-ALAPLRALQYLRLNDNPWVCDCRARPLWAWLQK 252

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
           ++   L  L  L+L HNQL +L   +   +P L  LD+S N ++ LP G    L +LQ  
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
           Y   N  +  P  L      L+  K+S   + L ELP+GL   L  L+T++L E+S+  +
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLE--KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 288 PSDLF 292
           P   F
Sbjct: 188 PKGFF 192

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
           M Y ++ +++  +  L +L   +   LP+L T+ L  + +  LP  L   +     ++  
Sbjct: 52  MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS-- 362
              +LTSLP    R   +L +L L+ N+LK LP  L     +L  L+L NNQL  + +  
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 363 LVGLSGLNSLDLSWNQLEQI 382
           L GL  L++L L  N L  I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 13/207 (6%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG--LSGLNSLDLSWNQL 379
           +L +L L R +L  L   +  +L  L TL+L +NQL+++  L+G  L  L  LD+S+N+L
Sbjct: 56  RLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRL 112
Query: 380 EQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
             + L A  GL  L  + L  N L T        +P      LE ++L+ N+++ L    
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KLEKLSLANNQLTELPAGL 167
Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNE 498
           ++ + +L  L L+ N+   IP       S+ L          + +   L  +   QD  E
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGF--FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225
Query: 499 DSTMVARSANIVILNDNPIACNCSNYD 525
           +  +  +  ++  +  N  +  C N D
Sbjct: 226 NVYVWKQGVDVKAVTSNVASVQCDNSD 252

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
           ++   L  L  L+L HNQL +L   +   +P L  LD+S N ++ LP G    L +LQ  
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
           Y   N  +  P  L      L+  K+S   + L ELP+GL   L  L+T++L E+S+  +
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLE--KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 288 PSDLF 292
           P   F
Sbjct: 188 PKGFF 192

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
           M Y ++ +++  +  L +L   +   LP+L T+ L  + +  LP  L   +     ++  
Sbjct: 52  MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS-- 362
              +LTSLP    R   +L +L L+ N+LK LP  L     +L  L+L NNQL  + +  
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 363 LVGLSGLNSLDLSWNQLEQI 382
           L GL  L++L L  N L  I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 13/207 (6%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG--LSGLNSLDLSWNQL 379
           +L +L L R +L  L   +  +L  L TL+L +NQL+++  L+G  L  L  LD+S+N+L
Sbjct: 56  RLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRL 112
Query: 380 EQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
             + L A  GL  L  + L  N L T        +P      LE ++L+ N+++ L    
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KLEKLSLANNQLTELPAGL 167
Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNE 498
           ++ + +L  L L+ N+   IP       S+ L          + +   L  +   QD  E
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGF--FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225
Query: 499 DSTMVARSANIVILNDNPIACNCSNYD 525
           +  +  +  ++  +  N  +  C N D
Sbjct: 226 NVYVWKQGVDVKAMTSNVASVQCDNSD 252

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
           ++   L  L  L+L HNQL +L   +   +P L  LD+S N ++ LP G    L +LQ  
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
           Y   N  +  P  L      L+  K+S   ++L ELP+GL   L  L+T++L E+S+  +
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLE--KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 288 PSDLF 292
           P   F
Sbjct: 188 PKGFF 192

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
           M Y ++ +++  +  L +L   +   LP+L T+ L  + +  LP  L   +     ++  
Sbjct: 52  MPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS-- 362
              +LTSLP    R   +L +L L+ N+LK LP  L     +L  L+L NN L  + +  
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
Query: 363 LVGLSGLNSLDLSWNQLEQI 382
           L GL  L++L L  N L  I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 13/207 (6%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG--LSGLNSLDLSWNQL 379
           +L +L L R +L  L   +  +L  L TL+L +NQL+++  L+G  L  L  LD+S+N+L
Sbjct: 56  RLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRL 112
Query: 380 EQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
             + L A  GL  L  + L  N L T        +P      LE ++L+ N ++ L    
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KLEKLSLANNNLTELPAGL 167
Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNE 498
           ++ + +L  L L+ N+   IP       S+ L          + +   L  +   QD  E
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGF--FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225
Query: 499 DSTMVARSANIVILNDNPIACNCSNYD 525
           +  +  +  ++  +  N  +  C N D
Sbjct: 226 NVYVWKQGVDVKAMTSNVASVQCDNSD 252

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
           ++   L  L  L+L HNQL +L   +   +P L  LD+S N ++ LP G    L +LQ  
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
           Y   N  +  P  L      L+  K+S   ++L ELP+GL   L  L+T++L E+S+  +
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLE--KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 288 PSDLF 292
           P   F
Sbjct: 188 PKGFF 192

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
           M Y ++ +++  +  L +L   +   LP+L T+ L  + +  LP  L   +     ++  
Sbjct: 52  MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS-- 362
              +LTSLP    R   +L +L L+ N+LK LP  L     +L  L+L NN L  + +  
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
Query: 363 LVGLSGLNSLDLSWNQLEQI 382
           L GL  L++L L  N L  I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 13/207 (6%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG--LSGLNSLDLSWNQL 379
           +L +L L R +L  L   +  +L  L TL+L +NQL+++  L+G  L  L  LD+S+N+L
Sbjct: 56  RLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRL 112
Query: 380 EQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
             + L A  GL  L  + L  N L T        +P      LE ++L+ N ++ L    
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KLEKLSLANNNLTELPAGL 167
Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNE 498
           ++ + +L  L L+ N+   IP       S+ L          + +   L  +   QD  E
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGF--FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225
Query: 499 DSTMVARSANIVILNDNPIACNCSNYD 525
           +  +  +  ++  +  N  +  C N D
Sbjct: 226 NVYVWKQGVDVKAMTSNVASVQCDNSD 252

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
           ++   L  L  L+L HNQL +L   +   +P L  LD+S N ++ LP G    L +LQ  
Sbjct: 72  QVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 130
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
           Y   N  +  P  L      L+  K+S   ++L ELP+GL   L  L+T++L E+S+  +
Sbjct: 131 YLKGNELKTLPPGLLTPTPKLE--KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 188
Query: 288 PSDLF 292
           P   F
Sbjct: 189 PKGFF 193

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
           M Y ++ +++  +  L +L   +   LP+L T+ L  + +  LP  L   +     ++  
Sbjct: 53  MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 108
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS-- 362
              +LTSLP    R   +L +L L+ N+LK LP  L     +L  L+L NN L  + +  
Sbjct: 109 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 168
Query: 363 LVGLSGLNSLDLSWNQLEQI 382
           L GL  L++L L  N L  I
Sbjct: 169 LNGLENLDTLLLQENSLYTI 188

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 13/207 (6%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG--LSGLNSLDLSWNQL 379
           +L +L L R +L  L   +  +L  L TL+L +NQL+++  L+G  L  L  LD+S+N+L
Sbjct: 57  RLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRL 113
Query: 380 EQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
             + L A  GL  L  + L  N L T        +P      LE ++L+ N ++ L    
Sbjct: 114 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KLEKLSLANNNLTELPAGL 168
Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNE 498
           ++ + +L  L L+ N+   IP       S+ L          + +   L  +   QD  E
Sbjct: 169 LNGLENLDTLLLQENSLYTIPKGF--FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 226
Query: 499 DSTMVARSANIVILNDNPIACNCSNYD 525
           +  +  +  ++  +  N  +  C N D
Sbjct: 227 NVYVWKQGVDVKAMTSNVASVQCDNSD 253

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
           ++   L  L  L+L HNQL +L   +   +P L  LD+S N ++ LP G    L +LQ  
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
           Y   N  +  P  L      L+  K+S   + L ELP+GL   L  L+T++L E+S+  +
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLE--KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 288 PSDLF 292
           P   F
Sbjct: 188 PKGFF 192

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
           M Y ++ +++  +  L +L   +   LP+L T+ L  + +  LP  L   +     ++  
Sbjct: 52  MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS-- 362
              +LTSLP    R   +L +L L+ N+LK LP  L     +L  L+L NNQL  + +  
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 363 LVGLSGLNSLDLSWNQLEQI 382
           L GL  L++L L  N L  I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 13/207 (6%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG--LSGLNSLDLSWNQL 379
           +L +L L R +L  L   +  +L  L TL+L +NQL+++  L+G  L  L  LD+S+N+L
Sbjct: 56  RLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRL 112
Query: 380 EQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
             + L A  GL  L  + L  N L T        +P      LE ++L+ N+++ L    
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KLEKLSLANNQLTELPAGL 167
Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNE 498
           ++ + +L  L L+ N+   IP       S+ L          + +   L  +   QD  E
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGF--FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225
Query: 499 DSTMVARSANIVILNDNPIACNCSNYD 525
           +  +  +  ++  +  N  +  C N D
Sbjct: 226 NVYVWKQGVDVKAMTSNVASVQCDNSD 252

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
           ++   L  L  L+L HNQL +L   +   +P L  LD+S N ++ LP G    L +LQ  
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
           Y   N  +  P  L      L+  K+S   + L ELP+GL   L  L+T++L E+S+  +
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLE--KLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 288 PSDLF 292
           P   F
Sbjct: 188 PKGFF 192

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
           M Y ++ +++  +  L +L   +   LP+L T+ L  + +  LP  L   +     ++  
Sbjct: 52  MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS-- 362
              +LTSLP    R   +L +L L+ N+LK LP  L     +L  L+L NN L  + +  
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGL 167
Query: 363 LVGLSGLNSLDLSWNQLEQI 382
           L GL  L++L L  N L  I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 13/207 (6%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG--LSGLNSLDLSWNQL 379
           +L +L L R +L  L   +  +L  L TL+L +NQL+++  L+G  L  L  LD+S+N+L
Sbjct: 56  RLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRL 112
Query: 380 EQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
             + L A  GL  L  + L  N L T        +P      LE ++L+ N ++ L    
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KLEKLSLANNDLTELPAGL 167
Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNE 498
           ++ + +L  L L+ N+   IP       S+ L          + +   L  +   QD  E
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGF--FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225
Query: 499 DSTMVARSANIVILNDNPIACNCSNYD 525
           +  +  +  ++  +  N  +  C N D
Sbjct: 226 NVYVWKQGVDVKAMTSNVASVQCDNSD 252

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
           ++   L  L  L+L HNQL +L   +   +P L  LD+S N ++ LP G    L +LQ  
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
           Y   N  +  P  L      L+  K+S   + L ELP+GL   L  L+T++L E+S+  +
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLE--KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 288 PSDLF 292
           P   F
Sbjct: 188 PKGFF 192

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
           M Y ++ +++  +  L +L   +   LP+L T+ L  + +  LP  L   +     ++  
Sbjct: 52  MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS-- 362
              +LTSLP    R   +L +L L+ N+LK LP  L     +L  L+L NNQL  + +  
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 363 LVGLSGLNSLDLSWNQLEQI 382
           L GL  L++L L  N L  I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 13/207 (6%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG--LSGLNSLDLSWNQL 379
           +L +L L R +L  L   +  +L  L TL+L +NQL+++  L+G  L  L  LD+S+N+L
Sbjct: 56  RLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRL 112
Query: 380 EQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
             + L A  GL  L  + L  N L T        +P      LE ++L+ N+++ L    
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KLEKLSLANNQLTELPAGL 167
Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNE 498
           ++ + +L  L L+ N+   IP       S+ L          + +   L  +   QD  E
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGF--FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225
Query: 499 DSTMVARSANIVILNDNPIACNCSNYD 525
           +  +  +  ++  +  N  +  C N D
Sbjct: 226 NVYVWKQGVDVKAMTSNVASVQCDNSD 252

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
           ++   L  L  L+L HNQL +L   +   +P L  LD+S N ++ LP G    L +LQ  
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
           Y   N  +  P  L      L+  K+S   ++L ELP+GL   L  L+T++L E+S+  +
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLE--KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 288 PSDLF 292
           P   F
Sbjct: 188 PKGFF 192

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
           M Y ++ +++  +  L +L   +   LP+L T+ L  + +  LP  L   +     ++  
Sbjct: 52  MPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS-- 362
              +LTSLP    R   +L +L L+ N+LK LP  L     +L  L+L NN L  + +  
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
Query: 363 LVGLSGLNSLDLSWNQLEQI 382
           L GL  L++L L  N L  I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 13/207 (6%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG--LSGLNSLDLSWNQL 379
           +L +L L R +L  L   +  +L  L TL+L +NQL+++  L+G  L  L  LD+S+N+L
Sbjct: 56  RLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRL 112
Query: 380 EQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
             + L A  GL  L  + L  N L T        +P      LE ++L+ N ++ L    
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KLEKLSLANNNLTELPAGL 167
Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNE 498
           ++ + +L  L L+ N+   IP       S+ L          + +   L  +   QD  E
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGF--FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225
Query: 499 DSTMVARSANIVILNDNPIACNCSNYD 525
           +  +  +  ++  +  N  +  C N D
Sbjct: 226 NVYVWKQGVDVKAMTSNVASVQCDNSD 252

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
           ++   L  L  L+L HNQL +L   +   +P L  LD+S N ++ LP G    L +LQ  
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
           Y   N  +  P  L      L+  K+S   ++L ELP+GL   L  L+T++L E+S+  +
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLE--KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 288 PSDLF 292
           P   F
Sbjct: 188 PKGFF 192

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
           M Y ++ +++  +  L +L   +   LP+L T+ L  + +  LP  L   +     ++  
Sbjct: 52  MPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS-- 362
              +LTSLP    R   +L +L L+ N+LK LP  L     +L  L+L NN L  + +  
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
Query: 363 LVGLSGLNSLDLSWNQLEQI 382
           L GL  L++L L  N L  I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 13/207 (6%)
Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG--LSGLNSLDLSWNQL 379
           +L +L L R +L  L   +  +L  L TL+L +NQL+++  L+G  L  L  LD+S+N+L
Sbjct: 56  RLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRL 112
Query: 380 EQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
             + L A  GL  L  + L  N L T        +P      LE ++L+ N ++ L    
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----KLEKLSLANNNLTELPAGL 167
Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNE 498
           ++ + +L  L L+ N+   IP       S+ L          + +   L  +   QD  E
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGF--FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225
Query: 499 DSTMVARSANIVILNDNPIACNCSNYD 525
           +  +  +  ++  +  N  +  C N D
Sbjct: 226 NVYVWKQGVDVKAMTSNVASVQCDNSD 252

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 2/132 (1%)
Query: 118 HKDIFKGTPQ-LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSL 176
           H  +  G P   + L L  N IT+L  GVF  +  L+ L LGSN +  +   +F +LT L
Sbjct: 31  HASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90
Query: 177 RILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM 236
            +L+L  NQL  L  A+F+ + +L+ L +  N ++ LP G+   L  L     + N+ + 
Sbjct: 91  TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKS 149
Query: 237 FPKDLFAEMKYL 248
            P   F  +  L
Sbjct: 150 IPHGAFDRLSSL 161

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 3/132 (2%)
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
           T+ +IL L  NQ+  L   +F+++ NL+ L +  N +  LP GVF  L +L      +N+
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFW 293
             + P  +F  + +L+ + +  +K  L ELP G+   L  L  + L ++ +  +P   F 
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNK--LTELPRGI-ERLTHLTHLALDQNQLKSIPHGAFD 156
Query: 294 NSTNITNIVLTG 305
             +++T+  L G
Sbjct: 157 RLSSLTHAYLFG 168

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 5/132 (3%)
Query: 263 LPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKK 322
           +P+G+  N  +L    L ++ I +L   +F +  N+  + L G  +L +LP  +F    +
Sbjct: 34  VPAGIPTNAQIL---YLHDNQITKLEPGVFDSLINLKELYL-GSNQLGALPVGVFDSLTQ 89
Query: 323 LVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI-TSLVGLSGLNSLDLSWNQLEQ 381
           L  L+L  N+L  LP  +F+ L  L  L +  N+L  +   +  L+ L  L L  NQL+ 
Sbjct: 90  LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS 149
Query: 382 INLIAFDGLSSL 393
           I   AFD LSSL
Sbjct: 150 IPHGAFDRLSSL 161

>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila Toll Receptor Length = 279

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 31/197 (15%)
Query: 39  YDRLPEQ-NLGPFNAVTFTFCPLPDENFI-SLFSKLNITTINTLAFSNSPSNVGV-LSPP 95
           Y +LP++  +G  + V    C LP    I S+   L I +  TL F +   N+G+ ++  
Sbjct: 60  YQQLPKKLRIGEVDRVQMRRCMLPGHTPIASILDYLGIVSPTTLIFESD--NLGMNITRQ 117
Query: 96  YFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVL 155
           + D LH +K    +  + +T +  ++      L  L LR N I E+ S +F  +  L+ +
Sbjct: 118 HLDRLHGLKRFRFT-TRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESI 175
Query: 156 DLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPS 215
           + GSN                        +L  + R IF  +P L+ L+++ N +  +P 
Sbjct: 176 EFGSN------------------------KLRQMPRGIFGKMPKLKQLNLASNQLKSVPD 211
Query: 216 GVFSDLRKLQTFYANSN 232
           G+F  L  LQ  + ++N
Sbjct: 212 GIFDRLTSLQKIWLHTN 228

>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila Toll Receptor Length = 279

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 146 FQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDI 205
           +Q +PK   L +G  D   M   +    T +  + LD+  +++ T  IF +       D 
Sbjct: 60  YQQLPK--KLRIGEVDRVQMRRCMLPGHTPIASI-LDYLGIVSPTTLIFES-------DN 109
Query: 206 SGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPS 265
            G NI+         L  L+ F   + R    P +L  +M+ L  +++   + +++E+PS
Sbjct: 110 LGMNIT---RQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLEL---RANIEEMPS 163
Query: 266 GLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK 325
            LF +L  L ++  G +                         KL  +P  +F    KL +
Sbjct: 164 HLFDDLENLESIEFGSN-------------------------KLRQMPRGIFGKMPKLKQ 198
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNN 355
           L L  N+LK +P+ +F+ L  L  + L  N
Sbjct: 199 LNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228

>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila Toll Receptor Length = 279

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 284 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 343
           +  +P++L  +  N++++ L  +  +  +PS LF D + L  +E   NKL+ +P  +F  
Sbjct: 135 LTHIPANLLTDMRNLSHLELRAN--IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGK 192
Query: 344 LKELYTLNLKNNQLENITSLVGLSGLNSLDLSW 376
           + +L  LNL +NQL+++   +    L SL   W
Sbjct: 193 MPKLKQLNLASNQLKSVPDGI-FDRLTSLQKIW 224

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 179 LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP 238
           L L+ N+L +L   +F+ +  L  L +S N I  LP GVF  L KL   Y + N+ Q  P
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVIL 279
             +F   K  Q+ +++   + LK +P G+F  L  L  + L
Sbjct: 93  NGVFD--KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL 131

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-- 364
           K LTS+P+ +        +LEL+ NKL+ LP  +F+ L +L  L+L  NQ++++   V  
Sbjct: 17  KGLTSVPTGIPSS---ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD 73
Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLL 403
            L+ L  L L  N+L+ +    FD L+ L  + L  N L
Sbjct: 74  KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 106/227 (46%), Gaps = 10/227 (4%)
Query: 150 PKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN 209
           P   +LDL +ND++ +  + FK L  L  L L +N++  +    F+ +  L+ L IS N+
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 210 ISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFA 269
           +  +P  + S L +L+    + NR +  PK +F+ ++ +  I++  +         G F 
Sbjct: 114 LVEIPPNLPSSLVELRI---HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170
Query: 270 NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQ 329
            L  LN + + E+ +  +P DL        N +   H K+ ++         KL +L L 
Sbjct: 171 GLK-LNYLRISEAKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG 225
Query: 330 RNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSW 376
            N+++ +       L  L  L+L NN+L  + +  GL  L  L + +
Sbjct: 226 HNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA--GLPDLKLLQVVY 270

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 111/245 (45%), Gaps = 37/245 (15%)
Query: 242 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 301
           F    +L+V++ S     LK +P  +  +  LL+   L  + I+EL  D F    ++  +
Sbjct: 29  FGCHCHLRVVQCS--DLGLKAVPKEISPDTTLLD---LQNNDISELRKDDFKGLQHLYAL 83
Query: 302 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 361
           VL  + K++ +    F   +KL KL + +N L  +P NL  SL EL    + +N++  + 
Sbjct: 84  VLV-NNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVEL---RIHDNRIRKVP 139
Query: 362 SLV--GLSGLNSLDLSWNQLEQINL--IAFDGL--------------------SSLNTVD 397
             V  GL  +N +++  N LE       AFDGL                     +LN + 
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELH 199
Query: 398 LSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSF 457
           L HN +   E +     L +   L  + L +N+I  + +  +S + +L+EL L +N  S 
Sbjct: 200 LDHNKIQAIELE----DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR 255
Query: 458 IPDQL 462
           +P  L
Sbjct: 256 VPAGL 260

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 103/425 (24%), Positives = 177/425 (41%), Gaps = 65/425 (15%)
Query: 122 FKGTPQLESL--NLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI- 178
           F GTP L  +   L+ ++   L+ G F+        D+   D++     + K L  + + 
Sbjct: 206 FGGTPNLSVIFNGLQNSTTQSLWLGTFE--------DIDDEDIS---SAMLKGLCEMSVE 254
Query: 179 -LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMF 237
            LNL  ++  +++   F     L+ LD++  ++  LPSG+   L  L+    + N F   
Sbjct: 255 SLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGM-KGLNLLKKLVLSVNHFDQL 313
Query: 238 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI--AELPSDLFWNS 295
            +   A    L  + I  +   L  L  G    L  L T+ L  + I  ++  S    N 
Sbjct: 314 CQISAANFPSLTHLYIRGNVKKL-HLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNL 372
Query: 296 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY-LPENLFESLKELYTLNLKN 354
           +++  + L+ H +   L S  F++C +L  L+L   +L    P++ F++L  L  LNL  
Sbjct: 373 SHLQTLNLS-HNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTY 431
Query: 355 NQLE--NITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGY 412
             L+  N   L GL  L  L+L  N  +       DG  ++   +L              
Sbjct: 432 CFLDTSNQHLLAGLPVLRHLNLKGNHFQ-------DG--TITKTNL-------------- 468
Query: 413 SPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNK-LT 471
             L+   +LE + LS   + S+      S+  +  +DL HN  S   D +DS+   K + 
Sbjct: 469 --LQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHN--SLTCDSIDSLSHLKGIY 524
Query: 472 LDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVS 531
           L+L+ N I I+  R L I +     N              L+ NP+ C CSN   + +  
Sbjct: 525 LNLAANSINIISPRLLPILSQQSTIN--------------LSHNPLDCTCSNIHFLTWYK 570
Query: 532 KKMTK 536
           + + K
Sbjct: 571 ENLHK 575

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 177/420 (42%), Gaps = 56/420 (13%)
Query: 83  SNSPSNVGVLSPPYFDGLHFVKHILLSHNK-------------EITGLHKDIFK-GTP-- 126
           +NS S   V+     DG   +KH+ +S NK             E   +  + F  G P  
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL 219
Query: 127 ----QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD 182
                L+ L++ GN ++  +S       +L++L++ SN      P +   L SL+ L+L 
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 277
Query: 183 HNQLIN-LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM-FPKD 240
            N+    +   +      L  LD+SGN+        F     L++   +SN F    P D
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 241 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITN 300
              +M+ L+V+ +S+++ S  ELP  L  NL           S + L  DL  +S N + 
Sbjct: 338 TLLKMRGLKVLDLSFNEFS-GELPESL-TNL-----------SASLLTLDL--SSNNFSG 382
Query: 301 IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 360
            +         LP+        L +L LQ N           +  EL +L+L  N L   
Sbjct: 383 PI---------LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433
Query: 361 --TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQC 418
             +SL  LS L  L L  N LE         + +L T+ L  N LT  E   G   L  C
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT-GEIPSG---LSNC 489
Query: 419 VNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSF-IPDQLDSIVSNKLTLDLSFN 477
            NL  I+LS NR++     WI  + +L  L L +N+FS  IP +L    S  + LDL+ N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTN 548

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 158/332 (47%), Gaps = 37/332 (11%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
           L  +N   N +T++     + + KL  + + +N +A + P    NLT+L  L L +NQ+ 
Sbjct: 65  LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
           ++      N+ NL  L++S N IS + +   S L  LQ    +SN+         A +  
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFSSNQVTDLKP--LANLTT 174
Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL-PSDLFWNSTNITNIVLTGH 306
           L+ + IS +K S       + A L  L ++I   + I+++ P  +    TN+  + L G+
Sbjct: 175 LERLDISSNKVS----DISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGN 227
Query: 307 --KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV 364
             K + +L S        L  L+L  N++  L       L +L  L L  NQ+ NI+ L 
Sbjct: 228 QLKDIGTLAS-----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 280
Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI 424
           GL+ L +L+L+ NQLE I+ I+       N  +L++  L F+      SP+     L+ +
Sbjct: 281 GLTALTNLELNENQLEDISPIS-------NLKNLTYLTLYFNNIS-DISPVSSLTKLQRL 332
Query: 425 NLSYNRISSLFDDWISSMTSLKELDLRHNNFS 456
             S N++S +    ++++T++  L   HN  S
Sbjct: 333 FFSNNKVSDVSS--LANLTNINWLSAGHNQIS 362

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 180/410 (43%), Gaps = 39/410 (9%)
Query: 75  TTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLS---HNKEITGLHKDIFKGTPQLESL 131
           T+I  L+ SNS   +   S   F GL +    +L    +N  + G   D F   PQLE  
Sbjct: 222 TSIRNLSLSNS--QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG--NDSFAWLPQLEYF 277
Query: 132 NLRGNSITELYSGVFQYVPKLQVLDLGSN---------DVAYMDPEIFKNLTSLRILNLD 182
            L  N+I  L+S     +  ++ L+L  +          +  +D   F+ L  L  LN++
Sbjct: 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337
Query: 183 HNQLINLTRAIFNNVPNLRSLDISGNNISI--LPSGVFSDLRK--LQTFYANSNRFQMFP 238
            N +  +   +F  + NL+ L +S +  S+  L +  F  L    L       N+     
Sbjct: 338 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397
Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 298
            D F+ + +L+V+ +  ++   +EL    +  L  +  + L  +   +L  + F    ++
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIG-QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456
Query: 299 TNIVL--TGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 356
             ++L     K + S PS  F+  + L  L+L  N +  + +++ E L++L  L+L++N 
Sbjct: 457 QRLMLRRVALKNVDSSPSP-FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515
Query: 357 LENITS----------LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFD 406
           L  +            L GLS L+ L+L  N  ++I +  F  L  L  +DL  N L   
Sbjct: 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-- 573
Query: 407 EYQYGYSPLKQCVNLETINLSYNRISSLFDDWIS-SMTSLKELDLRHNNF 455
                 S     V+L+++NL  N I+S+       +  +L ELD+R N F
Sbjct: 574 --TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 123/287 (42%), Gaps = 16/287 (5%)
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
           T++ +LNL HNQL  L  A F     L SLD+  N IS L   +   L  L+      N 
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA--ELPSDL 291
                   FA    L   ++    +S++++ +  F     L T+ L  + ++  +L + +
Sbjct: 85  LSQLSDKTFAFCTNL--TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142
Query: 292 FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN 351
              +     +     + L S    +F +   L KLEL  N++K      F ++  L+ L 
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201
Query: 352 LKNNQL-----ENITSLVGLSGLNSLDLSWNQLEQINLIAFDGL--SSLNTVDLSHNLLT 404
           L N QL     E +   +  + + +L LS +QL   +   F GL  ++L  +DLS+N L 
Sbjct: 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261
Query: 405 FDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLR 451
                 G         LE   L YN I  LF   +  + +++ L+L+
Sbjct: 262 V----VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 133/290 (45%), Gaps = 42/290 (14%)
Query: 125 TPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHN 184
           T  ++SL+L  N IT + +   Q    LQ L L SN +  ++ + F +L SL  L+L +N
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110
Query: 185 QLINLTRAIFNNVPNLRSLDISGNNISIL-PSGVFSDLRKLQTF-YANSNRFQMFPKDLF 242
            L NL+ + F  + +L  L++ GN    L  + +FS L KLQ     N + F    +  F
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170
Query: 243 AEMKYLQVIKI------SYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 296
           A + +L+ ++I      SY   SLK + +     L +   ++L E         +F    
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE---------IF---V 218
Query: 297 NITNIVLTGHKKLTSLPSTLFRD-----CKKLVKLELQRNKLKYLPENLFESLKELYTLN 351
           ++T+ V     + T L +  F +        L+K    RN +K   E+LF+ +K L    
Sbjct: 219 DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN-VKITDESLFQVMKLL---- 273
Query: 352 LKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
              NQ+         SGL  L+ S NQL+ +    FD L+SL  + L  N
Sbjct: 274 ---NQI---------SGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 177/420 (42%), Gaps = 56/420 (13%)
Query: 83  SNSPSNVGVLSPPYFDGLHFVKHILLSHNK-------------EITGLHKDIFK-GTP-- 126
           +NS S   V+     DG   +KH+ +S NK             E   +  + F  G P  
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL 216
Query: 127 ----QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD 182
                L+ L++ GN ++  +S       +L++L++ SN      P +   L SL+ L+L 
Sbjct: 217 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 274
Query: 183 HNQLIN-LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM-FPKD 240
            N+    +   +      L  LD+SGN+        F     L++   +SN F    P D
Sbjct: 275 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 241 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITN 300
              +M+ L+V+ +S+++ S  ELP  L  NL           S + L  DL  +S N + 
Sbjct: 335 TLLKMRGLKVLDLSFNEFS-GELPESL-TNL-----------SASLLTLDL--SSNNFSG 379
Query: 301 IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 360
            +         LP+        L +L LQ N           +  EL +L+L  N L   
Sbjct: 380 PI---------LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 430
Query: 361 --TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQC 418
             +SL  LS L  L L  N LE         + +L T+ L  N LT  E   G   L  C
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT-GEIPSG---LSNC 486
Query: 419 VNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSF-IPDQLDSIVSNKLTLDLSFN 477
            NL  I+LS NR++     WI  + +L  L L +N+FS  IP +L    S  + LDL+ N
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTN 545

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 170/359 (47%), Gaps = 29/359 (8%)
Query: 120 DIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNL------ 173
           DIF  +  L+ L L  N I E   G F  + +L  L L  N+V  + P + + L      
Sbjct: 176 DIFANS-SLKKLELSSNQIKEFSPGCFHAIGRLFGLFL--NNVQ-LGPSLTEKLCLELAN 231
Query: 174 TSLRILNLDHNQLINLTRAIFNNVP--NLRSLDISGNNISILPSGVFSDLRKLQTFYANS 231
           TS+R L+L ++QL   +   F  +   NL  LD+S NN++++ +  F+ L +L+ F+   
Sbjct: 232 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 291
Query: 232 NRFQ-MFPKDLFA--EMKYLQVIKISYHKDS--LKELPS---GLFANLPLLNTVILGESS 283
           N  Q +F   L     ++YL  +K S+ K S  L  LP      F  L  L  + + ++ 
Sbjct: 292 NNIQHLFSHSLHGLFNVRYLN-LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 350
Query: 284 IAELPSDLFWNSTNITNIVLT-GHKKLTSLPSTLFRDCKK--LVKLELQRNKLKYLPENL 340
           I  + S++F    N+  + L+     L +L +  F       L  L L +NK+  +  + 
Sbjct: 351 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 410
Query: 341 FESLKELYTLNLKNNQL-ENITS--LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVD 397
           F  L  L  L+L  N++ + +T     GL  +  + LS+N+  Q+   +F  + SL  + 
Sbjct: 411 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 470
Query: 398 LSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFS 456
           L    +         SP +   NL  ++LS N I+++ DD +  +  L+ LDL+HNN +
Sbjct: 471 LRR--VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 527

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 180/410 (43%), Gaps = 39/410 (9%)
Query: 75  TTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLS---HNKEITGLHKDIFKGTPQLESL 131
           T+I  L+ SNS   +   S   F GL +    +L    +N  + G   D F   PQLE  
Sbjct: 227 TSIRNLSLSNS--QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG--NDSFAWLPQLEYF 282
Query: 132 NLRGNSITELYSGVFQYVPKLQVLDLGSN---------DVAYMDPEIFKNLTSLRILNLD 182
            L  N+I  L+S     +  ++ L+L  +          +  +D   F+ L  L  LN++
Sbjct: 283 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 342
Query: 183 HNQLINLTRAIFNNVPNLRSLDISGNNISI--LPSGVFSDLRK--LQTFYANSNRFQMFP 238
            N +  +   +F  + NL+ L +S +  S+  L +  F  L    L       N+     
Sbjct: 343 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 402
Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 298
            D F+ + +L+V+ +  ++   +EL    +  L  +  + L  +   +L  + F    ++
Sbjct: 403 SDAFSWLGHLEVLDLGLNEIG-QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 461
Query: 299 TNIVL--TGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 356
             ++L     K + S PS  F+  + L  L+L  N +  + +++ E L++L  L+L++N 
Sbjct: 462 QRLMLRRVALKNVDSSPSP-FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 520
Query: 357 LENITS----------LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFD 406
           L  +            L GLS L+ L+L  N  ++I +  F  L  L  +DL  N L   
Sbjct: 521 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-- 578
Query: 407 EYQYGYSPLKQCVNLETINLSYNRISSLFDDWIS-SMTSLKELDLRHNNF 455
                 S     V+L+++NL  N I+S+       +  +L ELD+R N F
Sbjct: 579 --TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 626

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 123/287 (42%), Gaps = 16/287 (5%)
Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
           T++ +LNL HNQL  L  A F     L SLD+  N IS L   +   L  L+      N 
Sbjct: 30  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA--ELPSDL 291
                   FA    L   ++    +S++++ +  F     L T+ L  + ++  +L + +
Sbjct: 90  LSQLSDKTFAFCTNL--TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 147
Query: 292 FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN 351
              +     +     + L S    +F +   L KLEL  N++K      F ++  L+ L 
Sbjct: 148 QLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 206
Query: 352 LKNNQL-----ENITSLVGLSGLNSLDLSWNQLEQINLIAFDGL--SSLNTVDLSHNLLT 404
           L N QL     E +   +  + + +L LS +QL   +   F GL  ++L  +DLS+N L 
Sbjct: 207 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 266
Query: 405 FDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLR 451
                 G         LE   L YN I  LF   +  + +++ L+L+
Sbjct: 267 V----VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 309

>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish Tlr5 Length = 407

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 140/344 (40%), Gaps = 65/344 (18%)
Query: 116 GLHKDIFKGTPQLES----LNLRGNSITELYSGVFQYVPKLQVLDLGSNDVA-YMDPEIF 170
           GLH+      P+L +    ++L  NSI EL    F  +  LQ L +        +    F
Sbjct: 21  GLHQ-----VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75
Query: 171 KNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI--SILPSGVFSDLRKLQTFY 228
           + L+SL IL LD+NQ + L    FN + NL  L ++  N+  ++L    F  L  L+   
Sbjct: 76  RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV 135
Query: 229 ANSNRFQMF-PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
              N  +   P   F  M+   V+ ++++K  +K +      N    +  +L  SSI   
Sbjct: 136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNK--VKSICEEDLLNFQGKHFTLLRLSSITLQ 193
Query: 288 PSDLFW----------NSTNITNIVLTGH-------KKL--------------------- 309
             + +W           +T+IT + L+G+       K+                      
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253
Query: 310 TSLPSTLFRD----------CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 359
           +S   T F+D             +   +L ++K+  L +++F    +L  L L  N++  
Sbjct: 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK 313
Query: 360 I--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
           I   +  GL+ L  L L  NQL+ +    FD L+SL  + L  N
Sbjct: 314 IDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 357

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 157/332 (47%), Gaps = 38/332 (11%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
           L  +N   N +T++     + + KL  + + +N +A + P    NLT+L  L L +NQ+ 
Sbjct: 65  LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
           ++      N+ NL  L++S N IS + +   S L  LQ     +    + P    A +  
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLNFGNQVTDLKP---LANLTT 173
Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL-PSDLFWNSTNITNIVLTGH 306
           L+ + IS +K S       + A L  L ++I   + I+++ P  +    TN+  + L G+
Sbjct: 174 LERLDISSNKVS----DISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGN 226
Query: 307 --KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV 364
             K + +L S        L  L+L  N++  L       L +L  L L  NQ+ NI+ L 
Sbjct: 227 QLKDIGTLAS-----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 279
Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI 424
           GL+ L +L+L+ NQLE I+ I+       N  +L++  L F+      SP+     L+ +
Sbjct: 280 GLTALTNLELNENQLEDISPIS-------NLKNLTYLTLYFNNIS-DISPVSSLTKLQRL 331
Query: 425 NLSYNRISSLFDDWISSMTSLKELDLRHNNFS 456
             S N++S +    ++++T++  L   HN  S
Sbjct: 332 FFSNNKVSDVSS--LANLTNINWLSAGHNQIS 361

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 110 HNKEITGLHK-DIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPE 168
           +N E T L    IFK  PQL  +N   N IT++  G F+    +  + L SN +  +  +
Sbjct: 40  NNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHK 99
Query: 169 IFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFY 228
           +FK L SL+ L L  N++  +    F  + ++R L +  N I+ +  G F  L  L T  
Sbjct: 100 MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159
Query: 229 ANSNRF 234
             +N F
Sbjct: 160 LLANPF 165

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 17/124 (13%)
Query: 324 VKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLE 380
            +L L  N+   L    +F+ L +L  +N  NN++ +I   +  G SG+N + L+ N+LE
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 381 QINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLET-INLSYNRISSLFDDWI 439
            +    F GL SL T+ L  N +T             CV  ++ I LS  R+ SL+D+ I
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRIT-------------CVGNDSFIGLSSVRLLSLYDNQI 141
Query: 440 SSMT 443
           +++ 
Sbjct: 142 TTVA 145

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 9/104 (8%)
Query: 138 ITELY--SGVFQYVPK-------LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
           +TELY     F  VPK       L ++DL +N ++ +  + F N+T L  L L +N+L  
Sbjct: 33  VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN 232
           +    F+ + +LR L + GN+IS++P G F+DL  L      +N
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 179 LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP 238
           L LD NQ   L     +N  +L  +D+S N IS L +  FS++ +L T   + NR +  P
Sbjct: 36  LYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILG 280
              F  +K L++  +S H + +  +P G F +L  L+ + +G
Sbjct: 95  PRTFDGLKSLRL--LSLHGNDISVVPEGAFNDLSALSHLAIG 134

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 6/165 (3%)
Query: 97  FDGLHFVKHILLSHNK-EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVL 155
           F+GL+ +  + L  N  + +G+    F+G  +L  + +   +IT +  G+    P L  L
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTEL 197
Query: 156 DLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPS 215
            L  N +  +D    K L +L  L L  N +  +      N P+LR L ++ N +  +P 
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257
Query: 216 GVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSL 260
           G  +D + +Q  Y ++N       + F    Y    K SY   SL
Sbjct: 258 G-LADHKYIQVVYLHNNNISAIGSNDFCPPGY-NTKKASYSGVSL 300

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 117/248 (47%), Gaps = 30/248 (12%)
Query: 236 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 295
           M P   F    +L+V++ S     L+++P  L  +  LL+   L  + I E+    F N 
Sbjct: 21  MGPVCPFRCQCHLRVVQCS--DLGLEKVPKDLPPDTALLD---LQNNKITEIKDGDFKNL 75
Query: 296 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
            N+  ++L  + K++ +    F    KL +L L +N+LK LPE + ++L+EL    +  N
Sbjct: 76  KNLHTLILI-NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL---RVHEN 131
Query: 356 QLENITSLV--GLSGLNSLDLSWNQLEQ--INLIAFDGLSSLNTVDLSH-NLLTFDE--- 407
           ++  +   V  GL+ +  ++L  N L+   I   AF G+  L+ + ++  N+ T  +   
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP 191
Query: 408 -------------YQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNN 454
                         +   + LK   NL  + LS+N IS++ +  +++   L+EL L +N 
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 455 FSFIPDQL 462
              +P  L
Sbjct: 252 LVKVPGGL 259

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 40/187 (21%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQ-- 381
           L+LQ NK+  + +  F++LK L+TL L NN++  I+  +   L  L  L LS NQL++  
Sbjct: 57  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 382 -------------------INLIAFDGLSSLNTVDLSHNLLTFDEYQYG-YSPLKQCVNL 421
                              +    F+GL+ +  V+L  N L     + G +  +K+    
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK---- 172
Query: 422 ETINLSYNRISSLFDDWISSM-----TSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSF 476
               LSY RI+   D  I+++      SL EL L  N  + +       ++N   L LSF
Sbjct: 173 ----LSYIRIA---DTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225
Query: 477 NQIAIVD 483
           N I+ VD
Sbjct: 226 NSISAVD 232

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 6/165 (3%)
Query: 97  FDGLHFVKHILLSHNK-EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVL 155
           F+GL+ +  + L  N  + +G+    F+G  +L  + +   +IT +  G+    P L  L
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTEL 197
Query: 156 DLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPS 215
            L  N +  +D    K L +L  L L  N +  +      N P+LR L ++ N +  +P 
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257
Query: 216 GVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSL 260
           G  +D + +Q  Y ++N       + F    Y    K SY   SL
Sbjct: 258 G-LADHKYIQVVYLHNNNISAIGSNDFCPPGY-NTKKASYSGVSL 300

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 117/248 (47%), Gaps = 30/248 (12%)
Query: 236 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 295
           M P   F    +L+V++ S     L+++P  L  +  LL+   L  + I E+    F N 
Sbjct: 21  MGPVCPFRCQCHLRVVQCS--DLGLEKVPKDLPPDTALLD---LQNNKITEIKDGDFKNL 75
Query: 296 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
            N+  ++L  + K++ +    F    KL +L L +N+LK LPE + ++L+EL    +  N
Sbjct: 76  KNLHTLILI-NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL---RVHEN 131
Query: 356 QLENITSLV--GLSGLNSLDLSWNQLEQ--INLIAFDGLSSLNTVDLSH-NLLTFDE--- 407
           ++  +   V  GL+ +  ++L  N L+   I   AF G+  L+ + ++  N+ T  +   
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP 191
Query: 408 -------------YQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNN 454
                         +   + LK   NL  + LS+N IS++ +  +++   L+EL L +N 
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 455 FSFIPDQL 462
              +P  L
Sbjct: 252 LVKVPGGL 259

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 40/187 (21%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQ-- 381
           L+LQ NK+  + +  F++LK L+TL L NN++  I+  +   L  L  L LS NQL++  
Sbjct: 57  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 382 -------------------INLIAFDGLSSLNTVDLSHNLLTFDEYQYG-YSPLKQCVNL 421
                              +    F+GL+ +  V+L  N L     + G +  +K+    
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK---- 172
Query: 422 ETINLSYNRISSLFDDWISSM-----TSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSF 476
               LSY RI+   D  I+++      SL EL L  N  + +       ++N   L LSF
Sbjct: 173 ----LSYIRIA---DTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225
Query: 477 NQIAIVD 483
           N I+ VD
Sbjct: 226 NSISAVD 232

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 106/229 (46%), Gaps = 23/229 (10%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQIN 383
           L+L  N L++L    F S  EL  L+L   +++ I   +   LS L++L L+ N ++ + 
Sbjct: 35  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 384 LIAFDGLSSLNT-VDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL-FDDWISS 441
           L AF GLSSL   V L  NL + + +     P+     L+ +N+++N I S    ++ S+
Sbjct: 95  LGAFSGLSSLQKLVALETNLASLENF-----PIGHLKTLKELNVAHNLIQSFKLPEYFSN 149
Query: 442 MTSLKELDLRHNNFSFIP-------DQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQ 494
           +T+L+ LDL  N    I         Q+  +  +        N I     + + +K  A 
Sbjct: 150 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 209
Query: 495 DPNEDSTM------VARSANIVILNDNPIACNCSNYD-LIRFVSKKMTK 536
           D N+  ++         S   + L+ NP  C+C   D L R+++K   K
Sbjct: 210 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK 258

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 130 SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINL 189
           +++  G S+  + +G+       QVL L  N +  ++P +F  LT L  L+LD+NQL  L
Sbjct: 13  TVDCSGKSLASVPTGIPTTT---QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVL 69
Query: 190 TRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYL 248
              +F+ +  L  L ++ N +  +P G F +LR L   +  +N +     D+    +++
Sbjct: 70  PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACSDILYLSRWI 128

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 157/332 (47%), Gaps = 38/332 (11%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
           L  +N   N +T++     + + KL  + + +N +A + P    NLT+L  L L +NQ+ 
Sbjct: 69  LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 124
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
           ++      N+ NL  L++S N IS + +   S L  LQ     +    + P    A +  
Sbjct: 125 DIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLKP---LANLTT 177
Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL-PSDLFWNSTNITNIVLTGH 306
           L+ + IS +K S       + A L  L ++I   + I+++ P  +    TN+  + L G+
Sbjct: 178 LERLDISSNKVS----DISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGN 230
Query: 307 --KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV 364
             K + +L S        L  L+L  N++  L       L +L  L L  NQ+ NI+ L 
Sbjct: 231 QLKDIGTLAS-----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 283
Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI 424
           GL+ L +L+L+ NQLE I+ I+       N  +L++  L F+      SP+     L+ +
Sbjct: 284 GLTALTNLELNENQLEDISPIS-------NLKNLTYLTLYFNNIS-DISPVSSLTKLQRL 335
Query: 425 NLSYNRISSLFDDWISSMTSLKELDLRHNNFS 456
             + N++S +    ++++T++  L   HN  S
Sbjct: 336 FFANNKVSDVSS--LANLTNINWLSAGHNQIS 365

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 160/349 (45%), Gaps = 43/349 (12%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
           L  +N   N +T++     + + KL  + + +N +A + P    NLT+L  L L +NQ+ 
Sbjct: 65  LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
           ++      N+ NL  L++S N IS + +   S L  LQ    +SN+         A +  
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFSSNQVTDLKP--LANLTT 174
Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL-PSDLFWNSTNITNIVLTGH 306
           L+ + IS +K S       + A L  L ++I   + I+++ P  +    TN+  + L G+
Sbjct: 175 LERLDISSNKVS----DISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGN 227
Query: 307 --KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV 364
             K + +L S        L  L+L  N++  L       L +L  L L  NQ+ NI+ L 
Sbjct: 228 QLKDIGTLAS-----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 280
Query: 365 GLSGLNSLDLSWNQLEQINLIA-----------FDGLSSLNTVDLSHNLLTFDEYQYGYS 413
           GL+ L +L+L+ NQLE I+ I+           F+ +S ++ V     L     Y    S
Sbjct: 281 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS 340
Query: 414 PLKQCVNLETIN---LSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP 459
            +    NL  IN     +N+IS L    ++++T + +L L    ++  P
Sbjct: 341 DVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 387

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 6/139 (4%)
Query: 154 VLDLGSNDVAYMDPEIF-KNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI 212
           +LDL  N+++ +  E     LT+L  L L HN L  ++   F  VPNLR LD+S N++  
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102
Query: 213 LPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN-- 270
           L   +FSDL+ L+     +N   +  ++ F +M  LQ + +S  ++ +   P  L  +  
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS--QNQISRFPVELIKDGN 160
Query: 271 -LPLLNTVILGESSIAELP 288
            LP L  + L  + + +LP
Sbjct: 161 KLPKLMLLDLSSNKLKKLP 179

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 160/349 (45%), Gaps = 43/349 (12%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
           L  +N   N +T++     + + KL  + + +N +A + P    NLT+L  L L +NQ+ 
Sbjct: 65  LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
           ++      N+ NL  L++S N IS + +   S L  LQ    +SN+         A +  
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLNFSSNQVTDLKP--LANLTT 174
Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL-PSDLFWNSTNITNIVLTGH 306
           L+ + IS +K S       + A L  L ++I   + I+++ P  +    TN+  + L G+
Sbjct: 175 LERLDISSNKVS----DISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGN 227
Query: 307 --KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV 364
             K + +L S        L  L+L  N++  L       L +L  L L  NQ+ NI+ L 
Sbjct: 228 QLKDIGTLAS-----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 280
Query: 365 GLSGLNSLDLSWNQLEQINLIA-----------FDGLSSLNTVDLSHNLLTFDEYQYGYS 413
           GL+ L +L+L+ NQLE I+ I+           F+ +S ++ V     L     Y    S
Sbjct: 281 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS 340
Query: 414 PLKQCVNLETIN---LSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP 459
            +    NL  IN     +N+IS L    ++++T + +L L    ++  P
Sbjct: 341 DVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 387

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 106/229 (46%), Gaps = 23/229 (10%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQIN 383
           L+L  N L++L    F S  EL  L+L   +++ I   +   LS L++L L+ N ++ + 
Sbjct: 34  LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 384 LIAFDGLSSLNT-VDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL-FDDWISS 441
           L AF GLSSL   V +  NL + + +     P+     L+ +N+++N I S    ++ S+
Sbjct: 94  LGAFSGLSSLQKLVAVETNLASLENF-----PIGHLKTLKELNVAHNLIQSFKLPEYFSN 148
Query: 442 MTSLKELDLRHNNFSFIP-------DQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQ 494
           +T+L+ LDL  N    I         Q+  +  +        N I     + + +K  A 
Sbjct: 149 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 208
Query: 495 DPNEDSTM------VARSANIVILNDNPIACNCSNYD-LIRFVSKKMTK 536
           D N+  ++         S   + L+ NP  C+C   D L R+++K   K
Sbjct: 209 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK 257

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 65/127 (51%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
           +  + L  N+I  +  G F    KL+ +DL +N ++ + P+ F+ L SL  L L  N++ 
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
            L +++F  + +L+ L ++ N I+ L    F DL  L       N+ Q   K  F+ ++ 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 248 LQVIKIS 254
           +Q + ++
Sbjct: 154 IQTMHLA 160

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 3/130 (2%)
Query: 250 VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL 309
           + +I   ++++K +P G F+    L  + L  + I+EL  D F    ++ ++VL G+K +
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-I 92
Query: 310 TSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGLS 367
           T LP +LF     L  L L  NK+  L  + F+ L  L  L+L +N+L+ I   +   L 
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152
Query: 368 GLNSLDLSWN 377
            + ++ L+ N
Sbjct: 153 AIQTMHLAQN 162

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 106/229 (46%), Gaps = 23/229 (10%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQIN 383
           L+L  N L++L    F S  EL  L+L   +++ I   +   LS L++L L+ N ++ + 
Sbjct: 35  LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 384 LIAFDGLSSLNT-VDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL-FDDWISS 441
           L AF GLSSL   V +  NL + + +     P+     L+ +N+++N I S    ++ S+
Sbjct: 95  LGAFSGLSSLQKLVAVETNLASLENF-----PIGHLKTLKELNVAHNLIQSFKLPEYFSN 149
Query: 442 MTSLKELDLRHNNFSFIP-------DQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQ 494
           +T+L+ LDL  N    I         Q+  +  +        N I     + + +K  A 
Sbjct: 150 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 209
Query: 495 DPNEDSTM------VARSANIVILNDNPIACNCSNYD-LIRFVSKKMTK 536
           D N+  ++         S   + L+ NP  C+C   D L R+++K   K
Sbjct: 210 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK 258

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 106/229 (46%), Gaps = 23/229 (10%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQIN 383
           L+L  N L++L    F S  EL  L+L   +++ I   +   LS L++L L+ N ++ + 
Sbjct: 34  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 384 LIAFDGLSSLNT-VDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL-FDDWISS 441
           L AF GLSSL   V +  NL + + +     P+     L+ +N+++N I S    ++ S+
Sbjct: 94  LGAFSGLSSLQKLVAVETNLASLENF-----PIGHLKTLKELNVAHNLIQSFKLPEYFSN 148
Query: 442 MTSLKELDLRHNNFSFIP-------DQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQ 494
           +T+L+ LDL  N    I         Q+  +  +        N I     + + +K  A 
Sbjct: 149 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 208
Query: 495 DPNEDSTM------VARSANIVILNDNPIACNCSNYD-LIRFVSKKMTK 536
           D N+  ++         S   + L+ NP  C+C   D L R+++K   K
Sbjct: 209 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK 257

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 23/229 (10%)
Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQIN 383
           L+L  N L++L    F S  EL  L+L   +++ I   +   LS L++L L+ N ++ + 
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 384 LIAFDGLSSLNT-VDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL-FDDWISS 441
           L AF GLSSL   V +  NL + + +  G+  LK    L+ +N+++N I S    ++ S+
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGH--LK---TLKELNVAHNLIQSFKLPEYFSN 147
Query: 442 MTSLKELDLRHNNFSFIP-------DQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQ 494
           +T+L+ LDL  N    I         Q+  +  +        N I     + + +K  A 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 207
Query: 495 DPNEDSTM------VARSANIVILNDNPIACNCSNYD-LIRFVSKKMTK 536
           D N+  ++         S   + L+ NP  C+C   D L R+++K   K
Sbjct: 208 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK 256

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 130 SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINL 189
           +++  G S+  + +G+       QVL L  N +  ++P +F  LT L  L+LD+NQL  L
Sbjct: 13  TVDCSGKSLASVPTGIPTTT---QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69
Query: 190 TRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYL 248
              +F+ +  L  L ++ N +  +P G F +L+ L   +  +N +     D+    +++
Sbjct: 70  PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI 128

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 65/127 (51%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
           +  + L  N+I  +  G F    KL+ +DL +N ++ + P+ F+ L SL  L L  N++ 
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
            L +++F  + +L+ L ++ N I+ L    F DL  L       N+ Q   K  F+ ++ 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 248 LQVIKIS 254
           +Q + ++
Sbjct: 154 IQTMHLA 160

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 3/130 (2%)
Query: 250 VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL 309
           + +I   ++++K +P G F+    L  + L  + I+EL  D F    ++ ++VL G+K +
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-I 92
Query: 310 TSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGLS 367
           T LP +LF     L  L L  NK+  L  + F+ L  L  L+L +N+L+ I   +   L 
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152
Query: 368 GLNSLDLSWN 377
            + ++ L+ N
Sbjct: 153 AIQTMHLAQN 162

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 130 SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINL 189
           +++  G S+  + +G+       QVL L  N +  ++P +F  LT L  L+LD+NQL  L
Sbjct: 21  TVDCSGKSLASVPTGIPTTT---QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 77
Query: 190 TRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYL 248
              +F+ +  L  L ++ N +  +P G F +L+ L   +  +N +     D+    +++
Sbjct: 78  PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI 136

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 159/349 (45%), Gaps = 44/349 (12%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
           L  +N   N +T++     + + KL  + + +N +A + P    NLT+L  L L +NQ+ 
Sbjct: 70  LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 125
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
           ++      N+ NL  L++S N IS + +   S L  LQ     +    + P    A +  
Sbjct: 126 DIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLKP---LANLTT 178
Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL-PSDLFWNSTNITNIVLTGH 306
           L+ + IS +K S       + A L  L ++I   + I+++ P  +    TN+  + L G+
Sbjct: 179 LERLDISSNKVS----DISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGN 231
Query: 307 --KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV 364
             K + +L S        L  L+L  N++  L       L +L  L L  NQ+ NI+ L 
Sbjct: 232 QLKDIGTLAS-----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 284
Query: 365 GLSGLNSLDLSWNQLEQINLIA-----------FDGLSSLNTVDLSHNLLTFDEYQYGYS 413
           GL+ L +L+L+ NQLE I+ I+           F+ +S ++ V     L     Y    S
Sbjct: 285 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS 344
Query: 414 PLKQCVNLETIN---LSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP 459
            +    NL  IN     +N+IS L    ++++T + +L L    ++  P
Sbjct: 345 DVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 159/349 (45%), Gaps = 44/349 (12%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
           L  +N   N +T++     + + KL  + + +N +A + P    NLT+L  L L +NQ+ 
Sbjct: 65  LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
           ++      N+ NL  L++S N IS + +   S L  LQ     +    + P    A +  
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLNFGNQVTDLKP---LANLTT 173
Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL-PSDLFWNSTNITNIVLTGH 306
           L+ + IS +K S       + A L  L ++I   + I+++ P  +    TN+  + L G+
Sbjct: 174 LERLDISSNKVS----DISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGN 226
Query: 307 --KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV 364
             K + +L S        L  L+L  N++  L       L +L  L L  NQ+ NI+ L 
Sbjct: 227 QLKDIGTLAS-----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 279
Query: 365 GLSGLNSLDLSWNQLEQINLIA-----------FDGLSSLNTVDLSHNLLTFDEYQYGYS 413
           GL+ L +L+L+ NQLE I+ I+           F+ +S ++ V     L     Y    S
Sbjct: 280 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS 339
Query: 414 PLKQCVNLETINL---SYNRISSLFDDWISSMTSLKELDLRHNNFSFIP 459
            +    NL  IN     +N+IS L    ++++T + +L L    ++  P
Sbjct: 340 DVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 386

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 24/196 (12%)
Query: 54  TFTFCPLPDENFISLFSKLNITTINTLAFSN--SPSNVGVLSPPYFD------------- 98
            F+   LP   F+ L       + N L+F    S S+ G  S  Y D             
Sbjct: 340 AFSEVDLPSLEFLDL-------SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392
Query: 99  -GLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDL 157
            GL  ++H+   H+         +F     L  L++        ++G+F  +  L+VL +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452
Query: 158 GSNDVAY-MDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSG 216
             N       P+IF  L +L  L+L   QL  L+   FN++ +L+ L+++ N +  +P G
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512
Query: 217 VFSDLRKLQTFYANSN 232
           +F  L  LQ  + ++N
Sbjct: 513 IFDRLTSLQKIWLHTN 528

>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The Immunodominant Glycoprotein Of Bacillus Anthracis Spores Length = 179

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 130 SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINL 189
           ++N +  S+  + +G+       QVL L  N +  ++P +F +LT L  LNL  NQL  L
Sbjct: 23  TVNCQERSLASVPAGIPTTT---QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTAL 79
Query: 190 TRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLF 242
              +F+ +  L  L +  N +  +P GVF +L+ L   Y  +N +     D+ 
Sbjct: 80  PVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNPWDCECSDIL 132

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 99/434 (22%), Positives = 177/434 (40%), Gaps = 91/434 (20%)
Query: 121 IFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI-- 178
           IFKG        L+ +++  L+ G F+             D  Y+    F+ L  + +  
Sbjct: 217 IFKG--------LQNSTLQSLWLGTFE-----------DTDDQYLTSATFEGLCDMSVES 257
Query: 179 LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP 238
           +NL  ++  +L+ + F     ++ LD++  +++ LPSG+   +  L+    N+N F    
Sbjct: 258 INLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGI-EGMNSLKKLVLNANSFDQLC 316
Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSG--LFANLPLLNTVILGESSIAELPSDLFWNST 296
           +   A    L+ +   Y K ++++L  G      L  L  + L  S I          ++
Sbjct: 317 QINAASFPSLRDL---YIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIE---------AS 364
Query: 297 NITNIVLTGHKKLT----------SLPSTLFRDCKKLVKLELQRNKLKY-LPENLFESLK 345
           +  N+ L   + L            L    F++C +L  L++    L    P + F++L 
Sbjct: 365 DCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLH 424
Query: 346 ELYTLNLKNNQLE--NITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLL 403
            L  LNL +  L+  N   L GL  L  L+L  N  +       DG  S++  +L     
Sbjct: 425 LLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQ-------DG--SISKTNL----- 470
Query: 404 TFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLD 463
                      L+   +LE + LS   + S+       + ++  LDL HN  S   D +D
Sbjct: 471 -----------LQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHN--SLTGDSMD 517
Query: 464 SIVSNK-LTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCS 522
           ++   K L L+++ N I I+    L   A +Q             +I+ L+ NP+ C CS
Sbjct: 518 ALSHLKGLYLNMASNNIRIIPPHLL--PALSQQ------------SIINLSHNPLDCTCS 563
Query: 523 NYDLIRFVSKKMTK 536
           N   I +  + + K
Sbjct: 564 NIHFITWYKENLHK 577

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 95/219 (43%), Gaps = 27/219 (12%)
Query: 66  ISLFSKLNITTINTLAFSN--SPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
           ++  +KL++++ N L+F    S S+ G  S  Y D L F   I +S N          F 
Sbjct: 51  LTQLTKLSLSS-NGLSFKGCCSQSDFGTTSLKYLD-LSFNGVITMSSN----------FL 98
Query: 124 GTPQLESLNLRGNSITELYS-GVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD 182
           G  QLE L+ + +++ ++    VF  +  L  LD+           IF  L+SL +L + 
Sbjct: 99  GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158
Query: 183 HNQLI-NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDL 241
            N    N    IF  + NL  LD+S   +  L    F+ L  LQ    + N F  F  D 
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF--FSLDT 216
Query: 242 F--AEMKYLQVIKISYH------KDSLKELPSGL-FANL 271
           F    +  LQV+  S +      K  L+  PS L F NL
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 114/255 (44%), Gaps = 18/255 (7%)
Query: 209 NISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLF 268
            ++ +P+G+ S   +L+     SN+ Q  P  +F ++  L  + +S +  S K   S   
Sbjct: 18  GLTSVPTGIPSSATRLE---LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74
Query: 269 ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TLFRDCKKLVKLE 327
                L  + L  + +  + S+ F     + ++    H  L  +   ++F   + L+ L+
Sbjct: 75  FGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQ-HSNLKQMSEFSVFLSLRNLIYLD 132
Query: 328 LQRNKLKYLPENLFESLKELYTLNLKNNQL-ENITS--LVGLSGLNSLDLSWNQLEQINL 384
           +     +     +F  L  L  L +  N   EN        L  L  LDLS  QLEQ++ 
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192
Query: 385 IAFDGLSSLNTVDLSH-NLLTFDEYQYGYSPLKQCVN-LETINLSYNRISSLFDDWISSM 442
            AF+ LSSL  +++SH N  + D + Y      +C+N L+ ++ S N I +     +   
Sbjct: 193 TAFNSLSSLQVLNMSHNNFFSLDTFPY------KCLNSLQVLDYSLNHIMTSKKQELQHF 246
Query: 443 -TSLKELDLRHNNFS 456
            +SL  L+L  N+F+
Sbjct: 247 PSSLAFLNLTQNDFA 261

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 153/356 (42%), Gaps = 49/356 (13%)
Query: 114 ITGLHKDIFKGTPQLESLNLRGN-SITELYSGVFQYVPKLQV--LDLGS----NDVAYMD 166
           I  +    F+G  +L  L LRGN + + +     Q +  L V  L LG      ++   +
Sbjct: 193 IDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251
Query: 167 PEIFKNLTSLRI--LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKL 224
           P I + L  + I    L +    +     F+ + N+ ++ ++G +I  L         K 
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED--VPKHFKW 309
Query: 225 QTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLK----ELPSGLFANLPLLNTVILG 280
           Q+      + + FP     ++ +L+ + ++ +K S+      LPS  + +L        G
Sbjct: 310 QSLSIIRCQLKQFPT---LDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSG 366
Query: 281 ESSIAELPS------DLFWNSTNITNIVLTGHKKLTSLP---STL--------FRDCKKL 323
             S ++L +      DL +N   I +    G ++L  L    STL        F   +KL
Sbjct: 367 CCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426
Query: 324 VKLELQRNKLKYLPENLFESLKELYTLNL-----KNNQLENITSLVGLSGLNSLDLSWNQ 378
           + L++     K   + +F  L  L TL +     K+N L N+      + L  LDLS  Q
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV--FANTTNLTFLDLSKCQ 484
Query: 379 LEQINLIAFDGLSSLNTVDLSH-NLLTFDEYQYGYSPLKQCVNLETINLSYNRISS 433
           LEQI+   FD L  L  +++SH NLL  D   Y      Q  +L T++ S+NRI +
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN-----QLYSLSTLDCSFNRIET 535

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 153/356 (42%), Gaps = 49/356 (13%)
Query: 114 ITGLHKDIFKGTPQLESLNLRGN-SITELYSGVFQYVPKLQV--LDLGS----NDVAYMD 166
           I  +    F+G  +L  L LRGN + + +     Q +  L V  L LG      ++   +
Sbjct: 188 IDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 246
Query: 167 PEIFKNLTSLRI--LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKL 224
           P I + L  + I    L +    +     F+ + N+ ++ ++G +I  L         K 
Sbjct: 247 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED--VPKHFKW 304
Query: 225 QTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLK----ELPSGLFANLPLLNTVILG 280
           Q+      + + FP     ++ +L+ + ++ +K S+      LPS  + +L        G
Sbjct: 305 QSLSIIRCQLKQFPT---LDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSG 361
Query: 281 ESSIAELPS------DLFWNSTNITNIVLTGHKKLTSLP---STL--------FRDCKKL 323
             S ++L +      DL +N   I +    G ++L  L    STL        F   +KL
Sbjct: 362 CCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 421
Query: 324 VKLELQRNKLKYLPENLFESLKELYTLNL-----KNNQLENITSLVGLSGLNSLDLSWNQ 378
           + L++     K   + +F  L  L TL +     K+N L N+      + L  LDLS  Q
Sbjct: 422 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV--FANTTNLTFLDLSKCQ 479
Query: 379 LEQINLIAFDGLSSLNTVDLSH-NLLTFDEYQYGYSPLKQCVNLETINLSYNRISS 433
           LEQI+   FD L  L  +++SH NLL  D   Y      Q  +L T++ S+NRI +
Sbjct: 480 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN-----QLYSLSTLDCSFNRIET 530

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 95/231 (41%), Gaps = 33/231 (14%)
Query: 54  TFTFCPLPDENFISLFSKLNITTINTLAFSN--SPSNVGVLSPPYFDGLHFVKHILLSHN 111
            F+   LP   F+ L       + N L+F    S S+ G +S  Y D L F   I +S N
Sbjct: 364 AFSEVDLPSLEFLDL-------SRNGLSFKGCCSQSDFGTISLKYLD-LSFNGVITMSSN 415
Query: 112 KEITGLHKDIFKGTPQLESLNLRGNSITELYS-GVFQYVPKLQVLDLGSNDVAYMDPEIF 170
                     F G  QLE L+ + +++ ++    VF  +  L  LD+           IF
Sbjct: 416 ----------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465
Query: 171 KNLTSLRILNLDHNQLI-NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYA 229
             L+SL +L +  N    N    IF  + NL  LD+S   +  L    F+ L  LQ    
Sbjct: 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525
Query: 230 NSNRFQMFPKDLFAE--MKYLQVIKISYH------KDSLKELPSGL-FANL 271
           + N F  F  D F    +  LQV+  S +      K  L+  PS L F NL
Sbjct: 526 SHNNF--FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 12/148 (8%)
Query: 315 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL-ENITS--LVGLSGLNS 371
           ++F   + L+ L++     +     +F  L  L  L +  N   EN        L  L  
Sbjct: 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 498
Query: 372 LDLSWNQLEQINLIAFDGLSSLNTVDLSH-NLLTFDEYQYGYSPLKQCVN-LETINLSYN 429
           LDLS  QLEQ++  AF+ LSSL  +++SH N  + D + Y      +C+N L+ ++ S N
Sbjct: 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY------KCLNSLQVLDYSLN 552
Query: 430 RISSLFDDWISSM-TSLKELDLRHNNFS 456
            I +     +    +SL  L+L  N+F+
Sbjct: 553 HIMTSKKQELQHFPSSLAFLNLTQNDFA 580

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 94/215 (43%), Gaps = 17/215 (7%)
Query: 69  FSKLNITTINTLAFS-NSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQ 127
           FS++++ ++  L  S N  S  G  S   F G   +K++ LS N  IT      F G  Q
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVIT--MSSNFLGLEQ 397
Query: 128 LESLNLRGNSITELYS-GVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
           LE L+ + +++ ++    VF  +  L  LD+           IF  L+SL +L +  N  
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 187 I-NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAE- 244
             N    IF  + NL  LD+S   +  L    F+ L  LQ    + N F  F  D F   
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF--FSLDTFPYK 515
Query: 245 -MKYLQVIKISYH------KDSLKELPSGL-FANL 271
            +  LQV+  S +      K  L+  PS L F NL
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 550

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 12/148 (8%)
Query: 315 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL-ENITS--LVGLSGLNS 371
           ++F   + L+ L++     +     +F  L  L  L +  N   EN        L  L  
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 372 LDLSWNQLEQINLIAFDGLSSLNTVDLSH-NLLTFDEYQYGYSPLKQCVN-LETINLSYN 429
           LDLS  QLEQ++  AF+ LSSL  +++SH N  + D + Y      +C+N L+ ++ S N
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY------KCLNSLQVLDYSLN 528
Query: 430 RISSLFDDWISSM-TSLKELDLRHNNFS 456
            I +     +    +SL  L+L  N+F+
Sbjct: 529 HIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 49/90 (54%)
Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI 212
           Q L L +N +  ++P +F +L +L+ L  + N+L  +   +F+ +  L  LD++ N++  
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 213 LPSGVFSDLRKLQTFYANSNRFQMFPKDLF 242
           +P G F +L+ L   Y  +N +    +D+ 
Sbjct: 96  IPRGAFDNLKSLTHIYLYNNPWDCECRDIM 125

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 201 RSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSL 260
           + L ++ N I+ L  GVF  L  LQ  Y NSN+    P  +F   K  Q+ ++  + + L
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD--KLTQLTQLDLNDNHL 93
Query: 261 KELPSGLFANLPLLNTVIL 279
           K +P G F NL  L  + L
Sbjct: 94  KSIPRGAFDNLKSLTHIYL 112

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 75/144 (52%), Gaps = 12/144 (8%)
Query: 315 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDL 374
           T  ++  K+ +LEL  N LK +  +    L+ + TL+L + Q+ ++T L GLS L  L L
Sbjct: 85  TPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 142
Query: 375 SWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL 434
             NQ+  I+ +A  GL++L  + + +N +         +PL     L T+    N+IS +
Sbjct: 143 DLNQITNISPLA--GLTNLQYLSIGNNQVN------DLTPLANLSKLTTLRADDNKISDI 194
Query: 435 FDDWISSMTSLKELDLRHNNFSFI 458
               ++S+ +L E+ L+ N  S +
Sbjct: 195 --SPLASLPNLIEVHLKDNQISDV 216

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 7/129 (5%)
Query: 276 TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TLFRDCKKLVKLELQRNKLK 334
           TV      + E+P D+  ++T +    L    +L  + S  LF     LVKLEL+RN+L 
Sbjct: 12  TVDCTGRGLKEIPRDIPLHTTEL----LLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67
Query: 335 YLPENLFESLKELYTLNLKNNQLENITS--LVGLSGLNSLDLSWNQLEQINLIAFDGLSS 392
            +  N FE    +  L L  N+++ I++   +GL  L +L+L  NQ+  +   +F+ L+S
Sbjct: 68  GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127
Query: 393 LNTVDLSHN 401
           L +++L+ N
Sbjct: 128 LTSLNLASN 136

>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With The Entire Ectodomain Of Its Receptor Length = 350

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 118/273 (43%), Gaps = 39/273 (14%)
Query: 101 HFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSN 160
           H    + L    ++T +  D+ +   +L  +  +   I +   G F     L+ +++  N
Sbjct: 8   HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQK---GAFSGFGDLEKIEISQN 64
Query: 161 DV-AYMDPEIFKNLTSLRILNLDH-NQLINLTRAIFNNVPNLRSLDISGNNISILPSGVF 218
           DV   ++ ++F NL  L  + ++  N L+ +    F N+PNL+ L IS   I  LP    
Sbjct: 65  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP---- 120
Query: 219 SDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKD-SLKELPSGLFANLPLLNTV 277
            D+ K+ +                     LQ + +    + ++  +    F  L   + +
Sbjct: 121 -DVHKIHS---------------------LQKVLLDIQDNINIHTIERNSFVGLSFESVI 158
Query: 278 I-LGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYL 336
           + L ++ I E+ +  F N T +  + L+ +  L  LP+ +F      V L++ R ++  L
Sbjct: 159 LWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217
Query: 337 PENLFESLKELY---TLNLKNNQLENITSLVGL 366
           P    E+LK+L    T NLK  +L  +  LV L
Sbjct: 218 PSYGLENLKKLRARSTYNLK--KLPTLEKLVAL 248

>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 520

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 10/141 (7%)
Query: 131 LNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLT 190
           LN+  N I+EL++     + KL++L +  N + Y+D  +FK    L  L+L HN+L+ ++
Sbjct: 26  LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS 85
Query: 191 RAIFNNVPNLRSLDISGNNISILPS----GVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
               +   NL+ LD+S N    LP     G  S L+ L     +  +  + P       K
Sbjct: 86  ---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISK 142
Query: 247 YLQVIKISYHKDSLKELPSGL 267
            L V+  +Y +   KE P GL
Sbjct: 143 VLLVLGETYGE---KEDPEGL 160

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 74/140 (52%), Gaps = 12/140 (8%)
Query: 317 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSW 376
            ++  K+ +LEL  N LK +  +    L+ + TL+L + Q+ ++T L GLS L  L L  
Sbjct: 81  LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 138
Query: 377 NQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD 436
           NQ+  I+ +A  GL++L  + + +  ++        +PL     L T+    N+IS +  
Sbjct: 139 NQITNISPLA--GLTNLQYLSIGNAQVS------DLTPLANLSKLTTLKADDNKISDI-- 188
Query: 437 DWISSMTSLKELDLRHNNFS 456
             ++S+ +L E+ L++N  S
Sbjct: 189 SPLASLPNLIEVHLKNNQIS 208

>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone Complexed With Its Receptor Length = 252

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 100/232 (43%), Gaps = 34/232 (14%)
Query: 141 LYSGVFQYVPKLQVLDLGSNDV-AYMDPEIFKNLTSLRILNLDH-NQLINLTRAIFNNVP 198
           +  G F     L+ +++  NDV   ++ ++F NL  L  + ++  N L+ +    F N+P
Sbjct: 45  IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP 104
Query: 199 NLRSLDISGNNISILPS-GVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHK 257
           NL+ L IS   I  LP       L+K+     ++       ++ F  + +  VI +  +K
Sbjct: 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI-LWLNK 163
Query: 258 DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 317
           + ++E+ +  F                         N T +  + L+ +  L  LP+ +F
Sbjct: 164 NGIQEIHNCAF-------------------------NGTQLDELNLSDNNNLEELPNDVF 198
Query: 318 RDCKKLVKLELQRNKLKYLPENLFESLKELY---TLNLKNNQLENITSLVGL 366
                 V L++ R ++  LP    E+LK+L    T NLK  +L  +  LV L
Sbjct: 199 HGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK--KLPTLEKLVAL 248

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 129/279 (46%), Gaps = 36/279 (12%)
Query: 146 FQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDI 205
            +Y+  L+ L+L  N +  + P    NL  L  L +  N++ +++     N+ NLR L +
Sbjct: 62  IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYL 117
Query: 206 SGNNIS-ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELP 264
           + +NIS I P    +    L    AN N   + P      + YL V + S  KD      
Sbjct: 118 NEDNISDISPLANLTKXYSLN-LGANHNLSDLSPLSNXTGLNYLTVTE-SKVKDVTP--- 172
Query: 265 SGLFANLPLLNTVILGESSI------AELPSDLFWNS-----TNIT--------NIVLTG 305
               ANL  L ++ L  + I      A L S  ++ +     T+IT        N +  G
Sbjct: 173 ---IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIG 229
Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG 365
           + K+T L      +  +L  LE+  N++  +  N  + L +L  LN+ +NQ+ +I+ L  
Sbjct: 230 NNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKXLNVGSNQISDISVLNN 285
Query: 366 LSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT 404
           LS LNSL L+ NQL   +     GL++L T+ LS N +T
Sbjct: 286 LSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHIT 324

>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A Novel E3 Ligase Length = 622

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 120/268 (44%), Gaps = 58/268 (21%)
Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
           P+L +L + GN +T L        P L  L + SN + ++ P +   L  L I     NQ
Sbjct: 81  PELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHL-PALPSGLCKLWIFG---NQ 132
Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEM 245
           L +L        P L+ L +S N ++ LP+ + S+L KL  +        M P  L    
Sbjct: 133 LTSLPVL----PPGLQELSVSDNQLASLPA-LPSELCKLWAYNNQLTSLPMLPSGL---- 183
Query: 246 KYLQVIKISYHK-DSLKELPSGLF---------ANLPLLNT-----VILGE--SSIAELP 288
              Q + +S ++  SL  LPS L+          +LP L +     ++ G   +S+  LP
Sbjct: 184 ---QELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLP 240
Query: 289 SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 348
           S+L         ++++G++ LTSLP         L+ L + RN+L  LPE+L   L    
Sbjct: 241 SEL-------KELMVSGNR-LTSLPML----PSGLLSLSVYRNQLTRLPESLIH-LSSET 287
Query: 349 TLNLKNN--------QLENITSLVGLSG 368
           T+NL+ N         L  ITS  G SG
Sbjct: 288 TVNLEGNPLSERTLQALREITSAPGYSG 315

>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329) From Bacteroides Eggerthii Dsm 20697 At 2.70 A Resolution Length = 636

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 99/195 (50%), Gaps = 19/195 (9%)
Query: 301 IVLTGHKKLTSLP-STLFRDCKKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLE 358
           I+  G+  L + P  T  +  KKL  LE   N+L+  LP   F S  +L +LNL  NQ+ 
Sbjct: 309 IIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT 366
Query: 359 NI-TSLVGLS-GLNSLDLSWNQLEQI-NLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPL 415
            I  +  G +  + +L  + N+L+ I N+     +S  + +D S+N +   + +  + PL
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEIGSVDGK-NFDPL 425
Query: 416 K----QCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP-----DQLDSIV 466
                + +N+ +INLS N+IS    +  S+ + L  ++L  N  + IP     D+ ++  
Sbjct: 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENENFK 485
Query: 467 SNKL--TLDLSFNQI 479
           +  L  ++DL FN++
Sbjct: 486 NTYLLTSIDLRFNKL 500

>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX Length = 487

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 15/113 (13%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
           LE LNL+ N I ++   V     KL+ LDL SN +A+M PE F++   +  ++L +N+L+
Sbjct: 171 LEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV 227
Query: 188 NLTRAI-FNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPK 239
            + +A+ F+   NL   D+ GN       G   D      F++ + R Q   K
Sbjct: 228 LIEKALRFS--QNLEHFDLRGNGFHC---GTLRD------FFSKNQRVQTVAK 269

>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain Length = 317

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
           LE LNL+ N I ++   V     KL+ LDL SN +A+M PE F++   +  ++L +N+L+
Sbjct: 171 LEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV 227
Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPK 239
            + +A+     NL   D+ GN       G   D      F++ + R Q   K
Sbjct: 228 LIEKAL-RFSQNLEHFDLRGNGFHC---GTLRD------FFSKNQRVQTVAK 269

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	693
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-60
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-49
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-64
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-62
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-60
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-59
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-58
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-53
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-46
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-56
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-47
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-54
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-51
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-49
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-43
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-54
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-53
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-32
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-54
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-48
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-47
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-53
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-51
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-36
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-52
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-49
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-44
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-38
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-51
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-46
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-43
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-42
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-37
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-49
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-48
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-48
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-41
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-35
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-33
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-46
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-43
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-39
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-38
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-29
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-46
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-37
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-27
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-45
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-42
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-39
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-38
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-29
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-45
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-44
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-37
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-35
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-33
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-42
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-39
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-36
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-34
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-32
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-41
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-38
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-40
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-38
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-36
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-29
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-28
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-37
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-31
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-26
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-36
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-25
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-35
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-35
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-30
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-31
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-30
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-29
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-26
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-25
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-24
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-22
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-30
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-28
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-23
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-20
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-20
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-30
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-29
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-27
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-25
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-22
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-29
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-27
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-21
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-28
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-28
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-26
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-25
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-25
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-23
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-26
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-26
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-20
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-19
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-24
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-23
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-20
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-19
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-19
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-19
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-23
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-21
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-18
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-18
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-17
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-17
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-23
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-23
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-22
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-21
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-20
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-19
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-18
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-16
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-19
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-17
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-16
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-16
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-14
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-19
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-19
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-18
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-18
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-15
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-14
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-17
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-15
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-17
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-16
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-14
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-12
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-12
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-16
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-13
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-13
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-11
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-14
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-13
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-10
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-09
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	7e-13
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	7e-10
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	7e-10
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-09
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	7e-10
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	7e-09
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	4e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-06
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	6e-08
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	5e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	6e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	3e-04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	5e-04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	5e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	1e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	8e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-04

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  229 bits (587), Expect = 4e-66
 Identities = 99/480 (20%), Positives = 190/480 (39%), Gaps = 38/480 (7%)

Query: 67  SLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKG-- 124
                   +++  L  S++   +   SP  F  +  +  + L++ +    L + +     
Sbjct: 163 EELDIFANSSLKKLELSSN--QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA 220

Query: 125 TPQLESLNLRGNSITELYSGVFQ--YVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD 182
              + +L+L  + ++   +  F       L +LDL  N++  +  + F  L  L    L+
Sbjct: 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280

Query: 183 HNQLINLTRAIFNNVPNLRSLD---------ISGNNISILPSGVFSDLRKLQTFYANSNR 233
           +N + +L     + + N+R L+         IS  ++  +    F  L+ L+      N 
Sbjct: 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340

Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPL--LNTVILGESSIAELPSDL 291
                 ++F  +  L+ + +S    SL+ L +  F +L    L+ + L ++ I+++ SD 
Sbjct: 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400

Query: 292 FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN 351
           F    ++  + L  ++    L    +R  + + ++ L  NK   L  N F  +  L  L 
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460

Query: 352 LKNNQLENITS----LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDE 407
           L+   L+N+ S       L  L  LDLS N +  IN    +GL  L  +DL HN L    
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW 520

Query: 408 YQYG----YSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLD 463
                      LK   +L  +NL  N    +  +    +  LK +DL  NN + +P  + 
Sbjct: 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580

Query: 464 SIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSN 523
           +   +  +L+L  N I  V+ +                   R+   + +  NP  C C +
Sbjct: 581 NNQVSLKSLNLQKNLITSVEKKVFGP-------------AFRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  220 bits (563), Expect = 9e-63
 Identities = 95/448 (21%), Positives = 169/448 (37%), Gaps = 38/448 (8%)

Query: 73  NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
            I+ +        P           +  LS   F     +  + L  N  I  +  + F 
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFV 118

Query: 124 GTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFK--NLTSLRILNL 181
               L +L+L  N ++    G    +  LQ L L +N +  +  E       +SL+ L L
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 182 DHNQLINLTRAIFNNVPNLRSLDISGNNIS-ILPSGVFSD--LRKLQTFYANSNRFQMFP 238
             NQ+   +   F+ +  L  L ++   +   L   +  +     ++    ++++     
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 239 KDLFAEMKY--LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 296
              F  +K+  L ++ +SY+   L  + +  FA LP L    L  ++I  L S       
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNN--LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296

Query: 297 NITNIVLTG--------HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 348
           N+  + L             L  +    F+  K L  L ++ N +  +  N+F  L  L 
Sbjct: 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356

Query: 349 TLNLKNNQLENIT------SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNL 402
            L+L N+     T        +  S L+ L+L+ N++ +I   AF  L  L  +DL  N 
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416

Query: 403 LTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQL 462
           +     +      +   N+  I LSYN+   L  +  + + SL+ L LR      +    
Sbjct: 417 IGQ---ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473

Query: 463 DSIVSNK--LTLDLSFNQIAIVDLRTLE 488
                 +    LDLS N IA ++   LE
Sbjct: 474 SPFQPLRNLTILDLSNNNIANINDDMLE 501

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  214 bits (548), Expect = 1e-60
 Identities = 86/389 (22%), Positives = 156/389 (40%), Gaps = 23/389 (5%)

Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
            SH K +T +  D+      +  LNL  N +  L +  F    +L  LD+G N ++ ++P
Sbjct: 11  CSHLK-LTQVPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 66

Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
           E+ + L  L++LNL HN+L  L+   F    NL  L +  N+I  + +  F   + L T 
Sbjct: 67  ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126

Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPL--LNTVILGESSIA 285
             + N           +++ LQ + +S   + ++ L S          L  + L  + I 
Sbjct: 127 DLSHNGLSSTKLGTQVQLENLQELLLSN--NKIQALKSEELDIFANSSLKKLELSSNQIK 184

Query: 286 ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC--KKLVKLELQRNKLKYLPENLFES 343
           E     F     +  + L   +   SL   L  +     +  L L  ++L       F  
Sbjct: 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244

Query: 344 LK--ELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLS 399
           LK   L  L+L  N L  +   S   L  L    L +N ++ +   +  GL ++  ++L 
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 400 HNLLTFDEY-----QYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNN 454
            +            +      +    LE +N+  N I  +  +  + + +LK L L ++ 
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364

Query: 455 FSFI---PDQLDSIVSNKL-TLDLSFNQI 479
            S      +   S+  + L  L+L+ N+I
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKI 393

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  182 bits (464), Expect = 4e-49
 Identities = 80/379 (21%), Positives = 140/379 (36%), Gaps = 48/379 (12%)

Query: 125 TPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHN 184
           T   E  +     +T++   +      + VL+L  N +  +    F   + L  L++  N
Sbjct: 3   TVSHEVADCSHLKLTQVPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 185 QLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAE 244
            +  L   +   +P L+ L++  N +S L    F+    L   +  SN  Q    + F +
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 304
            K L  + +S+  + L     G    L  L  ++L  + I  L S+      N       
Sbjct: 120 QKNLITLDLSH--NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN------- 170

Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL-----EN 359
                             L KLEL  N++K      F ++  L+ L L N QL     E 
Sbjct: 171 ----------------SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

Query: 360 ITSLVGLSGLNSLDLSWNQLEQINLIAFDGL--SSLNTVDLSHNLLTFDEYQYGYSPLKQ 417
           +   +  + + +L LS +QL   +   F GL  ++L  +DLS+N L              
Sbjct: 215 LCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG----NDSFAW 270

Query: 418 CVNLETINLSYNRISSLFDDWISSMTSLKELDLRHN---------NFSFIPDQLDSIVSN 468
              LE   L YN I  LF   +  + +++ L+L+ +         +   I D     +  
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330

Query: 469 KLTLDLSFNQIAIVDLRTL 487
              L++  N I  +     
Sbjct: 331 LEHLNMEDNDIPGIKSNMF 349

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 95.8 bits (239), Expect = 1e-20
 Identities = 68/335 (20%), Positives = 112/335 (33%), Gaps = 55/335 (16%)

Query: 323 LVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLE 380
               +    KL  +P++L  ++     LNL +NQL  +   +    S L SLD+ +N + 
Sbjct: 6   HEVADCSHLKLTQVPDDLPTNIT---VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 381 QINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWIS 440
           ++       L  L  ++L HN L+             C NL  ++L  N I  + ++   
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSD----KTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 441 SMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDS 500
              +L  LDL HN  S         + N   L LS N+I  +               E  
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK------------SEELD 166

Query: 501 TMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGIN 560
                S   + L+ N I       +        +              L       V + 
Sbjct: 167 IFANSSLKKLELSSNQI------KEFSPGCFHAIG------------RLFGLFLNNVQLG 208

Query: 561 SVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQ-L 619
               E L            C      SI +++ S++ L+        T+   K T++  L
Sbjct: 209 PSLTEKL------------CLELANTSIRNLSLSNSQLSTTS---NTTFLGLKWTNLTML 253

Query: 620 ILHNNSINHFLESPPESYKLITDLDLSYNNISHVD 654
            L  N++N            +    L YNNI H+ 
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  224 bits (572), Expect = 1e-64
 Identities = 71/387 (18%), Positives = 150/387 (38%), Gaps = 11/387 (2%)

Query: 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDV 162
            + +  S N  +  +    F     L  L+L    I  ++   FQ   +L  L L +N +
Sbjct: 35  TECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 163 AYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLR 222
            +M         +L+ L      + ++     +N   L SL +  N+IS +         
Sbjct: 94  IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153

Query: 223 KLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES 282
           KL+     +N      K+  + ++    + ++ + + +  +  G F +    +    G  
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213

Query: 283 SIAELPSDLFWNS-TNITNIVLTGHKKLTSLPSTLFRDCKK--LVKLELQRNKLKYLPEN 339
           ++  +   L  ++  ++             +   +F    +  +  + LQ++    +  N
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTF-EDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272

Query: 340 LFESLKELYTLNLKNNQLENI-TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDL 398
            F     L  L+L    L  + + LVGLS L  L LS N+ E +  I+     SL  + +
Sbjct: 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332

Query: 399 SHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL--FDDWISSMTSLKELDLRHNNFS 456
             N    +    G   L+   NL  ++LS++ I +    +  + +++ L+ L+L +N   
Sbjct: 333 KGNTKRLEL---GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

Query: 457 FIPDQLDSIVSNKLTLDLSFNQIAIVD 483
            +  +          LDL+F ++ + D
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKD 416

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  216 bits (551), Expect = 1e-61
 Identities = 102/485 (21%), Positives = 188/485 (38%), Gaps = 43/485 (8%)

Query: 73  NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
            I++I+ +   N  +         ++  +  P       +K +   +N  I  L K+   
Sbjct: 116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMS 174

Query: 124 GTPQLE--SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN--LTSLRIL 179
              Q    SLNL GN I  +  G F      Q L+ G      +  +  KN  + SL + 
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233

Query: 180 NLDHNQLINLTRAIFNNVP--NLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMF 237
             +     +++ A+F  +   ++ S+++  +    + S  F     LQ     +      
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL 293

Query: 238 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI-AELPSDLFWNST 296
           P  L   +  L+ + +S +K   + L     +N P L  + +  ++   EL +    N  
Sbjct: 294 PSGLVG-LSTLKKLVLSANK--FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350

Query: 297 NITNIVLTGHKKLTSLPST--LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 354
           N+  + L  H  + +        R+   L  L L  N+   L    F+   +L  L+L  
Sbjct: 351 NLRELDL-SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409

Query: 355 NQLENITS---LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYG 411
            +L+   +      L  L  L+LS + L+  +   FDGL +L  ++L  N       Q  
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK- 468

Query: 412 YSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLT 471
            + L+    LE + LS+  +SS+     +S+  +  +DL HN  +    +  S +   + 
Sbjct: 469 TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG-IY 527

Query: 472 LDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVS 531
           L+L+ N I+I+    L I                    + L  NP+ C CSN   + +  
Sbjct: 528 LNLASNHISIILPSLLPIL--------------SQQRTINLRQNPLDCTCSNIYFLEWYK 573

Query: 532 KKMTK 536
           + M K
Sbjct: 574 ENMQK 578

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  215 bits (550), Expect = 2e-61
 Identities = 93/428 (21%), Positives = 169/428 (39%), Gaps = 28/428 (6%)

Query: 73  NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
            I  I+   F +             +  ++     G   +KH+       I+ +      
Sbjct: 68  QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLH 126

Query: 124 GTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD- 182
               LESL L  N I+ +         KL+VLD  +N + Y+  E   +L     L+L+ 
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186

Query: 183 -HNQLINLTRAIFNNVPNLRSLDISGNNIS--ILPSGVFSDLRKLQTFYANSNRFQMFPK 239
             N +  +    F++    +SL+  G      I      S ++ L          +    
Sbjct: 187 NGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245

Query: 240 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNIT 299
            +F  +  + V  I+  K     + S  F     L  + L  + ++ELPS L    + + 
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV-GLSTLK 304

Query: 300 NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLE 358
            +VL+ + K  +L      +   L  L ++ N  +  L     E+L+ L  L+L ++ +E
Sbjct: 305 KLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363

Query: 359 NIT----SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSP 414
                   L  LS L SL+LS+N+   +   AF     L  +DL+   L   + Q   SP
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ---SP 420

Query: 415 LKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSN--KL-T 471
            +    L+ +NLS++ +    +     + +L+ L+L+ N+F     Q  + +    +L  
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 472 LDLSFNQI 479
           L LSF  +
Sbjct: 481 LVLSFCDL 488

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  199 bits (507), Expect = 2e-55
 Identities = 69/363 (19%), Positives = 134/363 (36%), Gaps = 16/363 (4%)

Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
              E L    N +  + +  F  +  L  LDL    + ++  + F++   L  L L  N 
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEM 245
           LI +     +    L+ L      IS +      + + L++ Y  SN             
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 246 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES--SIAELPSDLFWNSTNITNIVL 303
           + L+V+    +   +  L     ++L     + L  +   IA +    F ++   +    
Sbjct: 153 EKLKVLDFQNNA--IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG 210

Query: 304 TGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY--TLNLKNNQLENIT 361
                L           + L     +    + +   +FE L E+   ++NL+ +   NI+
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270

Query: 362 --SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCV 419
             +    SGL  LDL+   L ++      GLS+L  + LS N                  
Sbjct: 271 SNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFE----NLCQISASNFP 325

Query: 420 NLETINLSYNRIS-SLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVS-NKLT-LDLSF 476
           +L  +++  N     L    + ++ +L+ELDL H++          + + + L  L+LS+
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 477 NQI 479
           N+ 
Sbjct: 386 NEP 388

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  108 bits (273), Expect = 7e-25
 Identities = 33/197 (16%), Positives = 65/197 (32%), Gaps = 15/197 (7%)

Query: 71  KLNITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKD- 120
            +  +    L   N                L    F     ++ + L+  + +       
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR-LKVKDAQS 419

Query: 121 IFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSN---DVAYMDPEIFKNLTSLR 177
            F+    L+ LNL  + +      +F  +P LQ L+L  N             + L  L 
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479

Query: 178 ILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMF 237
           IL L    L ++ +  F ++  +  +D+S N ++       S L+ +      SN   + 
Sbjct: 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII 538

Query: 238 PKDLFAEMKYLQVIKIS 254
              L   +   + I + 
Sbjct: 539 LPSLLPILSQQRTINLR 555

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 99.3 bits (248), Expect = 6e-22
 Identities = 58/345 (16%), Positives = 106/345 (30%), Gaps = 57/345 (16%)

Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQIN 383
              +   L  +P  L  S +    L    N L  I  T+   L  L  LDL+  Q+  I+
Sbjct: 17  YNCENLGLNEIPGTLPNSTE---CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 384 LIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMT 443
              F     L+T+ L+ N L F       + L     L+ +      ISS+    + +  
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAE----TALSGPKALKHLFFIQTGISSIDFIPLHNQK 129

Query: 444 SLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMV 503
           +L+ L L  N+ S I             LD   N I  +    +            S++ 
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM------------SSLQ 177

Query: 504 ARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVR 563
             +   + LN N I                +    +      + N     N  V      
Sbjct: 178 QATNLSLNLNGNDI--------------AGIEPGAFDSAVFQSLNFGGTQNLLVIFKG-- 221

Query: 564 PENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQ-LILH 622
                              S   S+            +    P  +E     S++ + L 
Sbjct: 222 ----------------LKNSTIQSLWLGTFEDMDDEDIS---PAVFEGLCEMSVESINLQ 262

Query: 623 NNSINHFLESPPESYKLITDLDLSYNNISHVDTMYPYLNHLELID 667
            +   +   +    +  + +LDL+  ++S + +    L+ L+ + 
Sbjct: 263 KHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLV 307

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  213 bits (545), Expect = 4e-62
 Identities = 82/349 (23%), Positives = 135/349 (38%), Gaps = 36/349 (10%)

Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEI 169
           H K    + + I     +   L+L  N I  L    F   P L+ L+L  N V+ ++P  
Sbjct: 19  HRKRFVAVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA 75

Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYA 229
           F NL +LR L L  N+L  +   +F  + NL  LDIS N I IL   +F DL  L++   
Sbjct: 76  FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135

Query: 230 NSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS 289
             N         F+ +  L+ + +      L  +P+   ++L  L  + L   +I  +  
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCN--LTSIPTEALSHLHGLIVLRLRHLNINAIRD 193

Query: 290 DLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYT 349
             F     +  + ++    L ++          L  L +    L  +P      L  L  
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRF 252

Query: 350 LNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDE 407
           LNL  N +  I  + L  L  L  + L   QL  +   AF GL+                
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN---------------- 296

Query: 408 YQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFS 456
                        L  +N+S N++++L +    S+ +L+ L L  N  +
Sbjct: 297 ------------YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  207 bits (529), Expect = 8e-60
 Identities = 65/321 (20%), Positives = 123/321 (38%), Gaps = 30/321 (9%)

Query: 88  NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQ 147
            +  L+   F     ++ + L+ N  ++ +    F     L +L LR N +  +  GVF 
Sbjct: 43  RIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101

Query: 148 YVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISG 207
            +  L  LD+  N +  +   +F++L +L+ L +  N L+ ++   F+ + +L  L +  
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161

Query: 208 NNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGL 267
            N++ +P+   S L  L                                   +  +    
Sbjct: 162 CNLTSIPTEALSHLHGLIVLRLRHLN--------------------------INAIRDYS 195

Query: 268 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 327
           F  L  L  + +      +  +       N+T++ +  H  LT++P    R    L  L 
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI-THCNLTAVPYLAVRHLVYLRFLN 254

Query: 328 LQRNKLKYLPENLFESLKELYTLNLKNNQLENITS--LVGLSGLNSLDLSWNQLEQINLI 385
           L  N +  +  ++   L  L  + L   QL  +      GL+ L  L++S NQL  +   
Sbjct: 255 LSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES 314

Query: 386 AFDGLSSLNTVDLSHNLLTFD 406
            F  + +L T+ L  N L  D
Sbjct: 315 VFHSVGNLETLILDSNPLACD 335

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  130 bits (330), Expect = 1e-32
 Identities = 48/207 (23%), Positives = 88/207 (42%), Gaps = 10/207 (4%)

Query: 275 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 334
             V+        +P  +    T    + L  ++ + +L    F     L +LEL  N + 
Sbjct: 14  RAVLCHRKRFVAVPEGIP---TETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVS 69

Query: 335 YLPENLFESLKELYTLNLKNNQLENITS--LVGLSGLNSLDLSWNQLEQINLIAFDGLSS 392
            +    F +L  L TL L++N+L+ I      GLS L  LD+S N++  +    F  L +
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129

Query: 393 LNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRH 452
           L ++++  N L +  ++          +LE + L    ++S+  + +S +  L  L LRH
Sbjct: 130 LKSLEVGDNDLVYISHR----AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185

Query: 453 NNFSFIPDQLDSIVSNKLTLDLSFNQI 479
            N + I D     +     L++S    
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPY 212

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (300), Expect = 8e-29
 Identities = 46/192 (23%), Positives = 83/192 (43%), Gaps = 9/192 (4%)

Query: 299 TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 358
              VL   K+  ++P  +  +      L+L +N++K L ++ F S   L  L L  N + 
Sbjct: 13  DRAVLCHRKRFVAVPEGIPTE---TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS 69

Query: 359 NITS--LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLK 416
            +       L  L +L L  N+L+ I L  F GLS+L  +D+S N +            +
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV----ILLDYMFQ 125

Query: 417 QCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSF 476
              NL+++ +  N +  +     S + SL++L L   N + IP +  S +   + L L  
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185

Query: 477 NQIAIVDLRTLE 488
             I  +   + +
Sbjct: 186 LNINAIRDYSFK 197

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 11/81 (13%)

Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESP 633
           CP RC C+        +V C       +P+ +P            L L  N I    +  
Sbjct: 3   CPPRCECSAQDR----AVLCHRKRFVAVPEGIPTETR-------LLDLGKNRIKTLNQDE 51

Query: 634 PESYKLITDLDLSYNNISHVD 654
             S+  + +L+L+ N +S V+
Sbjct: 52  FASFPHLEELELNENIVSAVE 72

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  213 bits (543), Expect = 4e-59
 Identities = 98/453 (21%), Positives = 172/453 (37%), Gaps = 41/453 (9%)

Query: 73  NITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLN 132
            + T   L  S +   +  ++   F  L  ++ + L        + K+ F+  P L  L+
Sbjct: 22  VLNTTERLLLSFN--YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 133 LRGNSITELYSGVFQYVPKLQVLDLGSN--DVAYMDPEIFKNLTSLRILNLDHNQLINLT 190
           L  + I  L+   FQ +  L  L L       A +    F+NL +L  L+L  NQ+ +L 
Sbjct: 80  LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

Query: 191 -RAIFNNVPNLRSLDISGNNISILPSGVFSDLR--KLQTFYANSNRFQMFPKDLFAEM-- 245
               F  + +L+S+D S N I ++       L+   L  F   +N         + +   
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 246 ----KYLQVIKISYHK----------DSLKELPSGLFANLPLLNTVILGESSIAELPSDL 291
                 L+++ +S +           +++ +  +        +     G  +I +   + 
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259

Query: 292 FWN--STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYT 349
           F     +++ ++ L+ H  + SL S +F   K L  L L  NK+  + +  F  L  L  
Sbjct: 260 FAGLARSSVRHLDLS-HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318

Query: 350 LNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDE 407
           LNL  N L  +  ++  GL  +  +DL  N +  I    F  L  L T+DL  N LT   
Sbjct: 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378

Query: 408 YQYGYSPLKQCVN-----------LETINLSYNRISSLFDDWI-SSMTSLKELDLRHNNF 455
           +      +    N              I+LS NR+ +L   +    +  L+ L L  N F
Sbjct: 379 FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438

Query: 456 SFIPDQLDSIVSNKLT-LDLSFNQIAIVDLRTL 487
           S          +  L  L L  N + +     L
Sbjct: 439 SSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  211 bits (538), Expect = 2e-58
 Identities = 115/609 (18%), Positives = 219/609 (35%), Gaps = 65/609 (10%)

Query: 97  FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSIT-ELYSGVFQYVPKLQVL 155
              L+  + +LLS N  I  +    F    QL+ L L        +    F+ +P L++L
Sbjct: 20  PQVLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78

Query: 156 DLGSNDVAYMDPEIFKNLTSLRILNLDHNQL--INLTRAIFNNVPNLRSLDISGNNI-SI 212
           DLGS+ + ++ P+ F+ L  L  L L    L    L    F N+  L  LD+S N I S+
Sbjct: 79  DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138

Query: 213 LPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP 272
                F  L  L++   +SN+  +  +     ++   +   S   +SL    S  +    
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 273 ------LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL 326
                 +L  + +  +      +  F N+             ++   +        ++  
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNA-------------ISKSQAFSLILAHHIMGA 245

Query: 327 ELQRNKLKYLPENLFESLKELY--TLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQI 382
               + +K   +N F  L       L+L +  + ++ S V   L  L  L+L++N++ +I
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305

Query: 383 NLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSM 442
              AF GL +L  ++LS+NLL     +   S       +  I+L  N I+ + D     +
Sbjct: 306 ADEAFYGLDNLQVLNLSYNLLG----ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361

Query: 443 TSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTM 502
             L+ LDLR N  + I       + +   + LS N++  +    L               
Sbjct: 362 EKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKINL--------------- 401

Query: 503 VARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSV 562
              +AN++ L++N +      Y L+R    ++           + +     N    +  +
Sbjct: 402 ---TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN--PSLEQL 456

Query: 563 RPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQ-LIL 621
                          C+  F     +  +  +   L  +P  +         T+++ L L
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV-----FSHLTALRGLSL 511

Query: 622 HNNSINHFLESPPESYKLITDLDLSYNNISHVDTMYPYLNHLELIDSEKIICHGSTKPLN 681
           ++N +     S  +    +  LD+S N +   +        +  I   K IC        
Sbjct: 512 NSNRLTVL--SHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFI 569

Query: 682 GILLKNIQN 690
             L      
Sbjct: 570 NWLNHTNVT 578

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  196 bits (501), Expect = 2e-53
 Identities = 99/517 (19%), Positives = 187/517 (36%), Gaps = 61/517 (11%)

Query: 94  PPYFDGLHFVKHILLSHNKEITGLHKDIFKG--TPQLESLNLRGNSITELYSGVFQYVPK 151
            P F  L+ +K I  S N+ I  + +   +      L   +L  NS+    S  +     
Sbjct: 141 HPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 152 ------LQVLDLGSNDVAYMDPEIFKN------------LTSLRILNLDHNQLINLTRAI 193
                 L++LD+  N         F N               +       + + +  +  
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259

Query: 194 FNNVP--NLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVI 251
           F  +   ++R LD+S   +  L S VF  L+ L+      N+      + F  +  LQV+
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319

Query: 252 KISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTS 311
            +SY+   L EL S  F  LP +  + L ++ IA +    F     +  + L     LT+
Sbjct: 320 NLSYNL--LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR-DNALTT 376

Query: 312 LPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS---LVGLSG 368
           +          +  + L  NKL  LP+           ++L  N+LEN+     L+ +  
Sbjct: 377 IH-----FIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDILYFLLRVPH 427

Query: 369 LNSLDLSWNQLEQINLIA-FDGLSSLNTVDLSHNLLTFDEYQY-GYSPLKQCVNLETINL 426
           L  L L+ N+    +         SL  + L  N+L         +   +   +L+ + L
Sbjct: 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487

Query: 427 SYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRT 486
           ++N ++SL     S +T+L+ L L  N  + +    + + +N   LD+S NQ+   +   
Sbjct: 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH--NDLPANLEILDISRNQLLAPNPDV 545

Query: 487 LEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVT 546
                              S +++ +  N   C C     I +++           ++  
Sbjct: 546 FV-----------------SLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYC 588

Query: 547 DNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFS 583
              + F  +GV + S+  E    +      +      
Sbjct: 589 VYPDSF--SGVSLFSLSTEGCDEEEVLKSLKFSLFIV 623

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  174 bits (443), Expect = 6e-46
 Identities = 90/422 (21%), Positives = 149/422 (35%), Gaps = 57/422 (13%)

Query: 46  NLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKH 105
           +L    +V +  C  P  N +     ++          N  + +           H +  
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244

Query: 106 ILLSHNKEITGLHKDIFKG--TPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVA 163
                +  I    ++ F G     +  L+L    +  L S VF+ +  L+VL+L  N + 
Sbjct: 245 AGFGFHN-IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303

Query: 164 YMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRK 223
            +  E F  L +L++LNL +N L  L  + F  +P +  +D+  N+I+I+    F  L K
Sbjct: 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363

Query: 224 LQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS 283
           LQT     N                                      +P +  + L  + 
Sbjct: 364 LQTLDLRDNALTTIH-------------------------------FIPSIPDIFLSGNK 392

Query: 284 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF-RDCKKLVKLELQRNKLKYLPEN-LF 341
           +  LP           N++     +L +L    F      L  L L +N+      +   
Sbjct: 393 LVTLPKINLTA-----NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447

Query: 342 ESLKELYTLNLKNNQLENIT-------SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLN 394
                L  L L  N L+             GLS L  L L+ N L  +    F  L++L 
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507

Query: 395 TVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNN 454
            + L+ N LT        S      NLE +++S N++ +   D      SL  LD+ HN 
Sbjct: 508 GLSLNSNRLTV------LSHNDLPANLEILDISRNQLLAPNPDV---FVSLSVLDITHNK 558

Query: 455 FS 456
           F 
Sbjct: 559 FI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  111 bits (278), Expect = 3e-25
 Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 25/247 (10%)

Query: 265 SGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 324
           + +   L     ++L  + I  + +  F     +  + L       ++    FR+   L 
Sbjct: 17  TQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR 76

Query: 325 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT----SLVGLSGLNSLDLSWNQLE 380
            L+L  +K+ +L  + F+ L  L+ L L    L +          L  L  LDLS NQ+ 
Sbjct: 77  ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136

Query: 381 QINL-IAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWI 439
            + L  +F  L+SL ++D S N +          PL+    L   +L+ N + S      
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGK-TLSFFSLAANSLYSRVSVDW 194

Query: 440 SSM------TSLKELDLRHNNFSFIPDQLDS------------IVSNKLTLDLSFNQIAI 481
                      L+ LD+  N ++       S            +  + +     F+ I  
Sbjct: 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254

Query: 482 VDLRTLE 488
            D  T  
Sbjct: 255 PDQNTFA 261

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  102 bits (256), Expect = 1e-22
 Identities = 65/368 (17%), Positives = 124/368 (33%), Gaps = 66/368 (17%)

Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI---TS 362
              LT +P  L        +L L  N ++ +  + F  L++L  L L +          +
Sbjct: 13  FCNLTQVPQVL----NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA 68

Query: 363 LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLE 422
              L  L  LDL  +++  ++  AF GL  L  + L    L+    + G    +    L 
Sbjct: 69  FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG--YFRNLKALT 126

Query: 423 TINLSYNRISSLFDDW-ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAI 481
            ++LS N+I SL+       + SLK +D   N    + +                  +  
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH-------------ELEPLQG 173

Query: 482 VDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQM 541
             L    +                +AN +    +     C N                  
Sbjct: 174 KTLSFFSL----------------AANSLYSRVSVDWGKCMN----------------PF 201

Query: 542 LELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHM 601
             +V + L+  GN   G       N +       A    +    + IM       ++   
Sbjct: 202 RNMVLEILDVSGN---GWTVDITGNFSNAISKSQAF---SLILAHHIMGAGFGFHNIKDP 255

Query: 602 PDYLPVTYEDKKATSIQ-LILHNNSINHFLESPPESYKLITDLDLSYNNISHV-DTMYPY 659
                 T+     +S++ L L +  +        E+ K +  L+L+YN I+ + D  +  
Sbjct: 256 DQN---TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG 312

Query: 660 LNHLELID 667
           L++L++++
Sbjct: 313 LDNLQVLN 320

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  196 bits (501), Expect = 1e-56
 Identities = 89/397 (22%), Positives = 150/397 (37%), Gaps = 72/397 (18%)

Query: 91  VLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVP 150
           V        L+  K +   ++  +  L   +     Q+E LNL    I E+ +  F Y  
Sbjct: 35  VYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH 93

Query: 151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
            +Q L +G N + Y+ P +F+N+  L +L L+ N L +L R IF+N P L +L +S NN+
Sbjct: 94  TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153

Query: 211 SILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
             +    F     LQ    +SNR                          L  +   L  +
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNR--------------------------LTHVDLSLIPS 187

Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 330
           L   N               + +N              L++L   +      + +L+   
Sbjct: 188 LFHAN---------------VSYN-------------LLSTLAIPIA-----VEELDASH 214

Query: 331 NKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGL 390
           N +  +   +   L     L L++N L +   L+   GL  +DLS+N+LE+I    F  +
Sbjct: 215 NSINVVRGPVNVELT---ILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271

Query: 391 SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDL 450
             L  + +S+N L            +    L+ ++LS+N +  + +        L+ L L
Sbjct: 272 QRLERLYISNNRLVALN-----LYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYL 325

Query: 451 RHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTL 487
            HN+   +     S       L LS N      LR L
Sbjct: 326 DHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRAL 359

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  171 bits (436), Expect = 2e-47
 Identities = 64/317 (20%), Positives = 127/317 (40%), Gaps = 19/317 (5%)

Query: 167 PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQT 226
               +       +++D              + N + +    + +  LP+ +    R+++ 
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 227 FYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE 286
              N  + +      FA    +Q + + ++   ++ LP  +F N+PLL  ++L  + ++ 
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA--IRYLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 287 LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKE 346
           LP  +F N+  +T + +  +  L  +    F+    L  L+L  N+L ++  +L  SL  
Sbjct: 132 LPRGIFHNTPKLTTLSM-SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH 190

Query: 347 LYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFD 406
               N+  N    +++L     +  LD S N +  +       L+ L    L HN LT  
Sbjct: 191 A---NVSYNL---LSTLAIPIAVEELDASHNSINVVRGPVNVELTIL---KLQHNNLT-- 239

Query: 407 EYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIV 466
                 + L     L  ++LSYN +  +       M  L+ L + +N    +      I 
Sbjct: 240 ----DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP 295

Query: 467 SNKLTLDLSFNQIAIVD 483
           + K  LDLS N +  V+
Sbjct: 296 TLK-VLDLSHNHLLHVE 311

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 94.7 bits (236), Expect = 6e-21
 Identities = 34/189 (17%), Positives = 72/189 (38%), Gaps = 17/189 (8%)

Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY-----TLNLKNNQLENI 360
             +   + S L  DC            +    ++++   +++       +  KN+ +  +
Sbjct: 7   QPEYKCIDSNLQYDC------VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL 60

Query: 361 TS--LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQC 418
            +  L     +  L+L+  Q+E+I+  AF    ++  + +  N + +          +  
Sbjct: 61  PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP----PHVFQNV 116

Query: 419 VNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQ 478
             L  + L  N +SSL      +   L  L + +NN   I D      ++   L LS N+
Sbjct: 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176

Query: 479 IAIVDLRTL 487
           +  VDL  +
Sbjct: 177 LTHVDLSLI 185

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  196 bits (499), Expect = 2e-54
 Identities = 84/431 (19%), Positives = 154/431 (35%), Gaps = 37/431 (8%)

Query: 73  NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
            +  + + +FSN             +  +    + GLH + +++L+ N  I       F 
Sbjct: 43  PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFS 101

Query: 124 GTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD-PEIFKNLTSLRILNLD 182
           G   LE+L      +  L S     +  L+ L++  N +     P  F NLT+L  ++L 
Sbjct: 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161

Query: 183 HNQLINLTRAIFNNVPNLR----SLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ-MF 237
           +N +  +T      +        SLD+S N I  +    F  + KL       N      
Sbjct: 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNI 220

Query: 238 PKDLFAEMKYLQVIKISYHK----DSLKELPSGLFANLPLLNTVILGES--SIAELPSDL 291
            K     +  L V ++   +     +L+     +   L  +       +  +        
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280

Query: 292 FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN 351
           F    N++ + L     +  L         K   L + R +LK  P      L  L +L 
Sbjct: 281 FHCLANVSAMSLA-GVSIKYLEDVPK--HFKWQSLSIIRCQLKQFP---TLDLPFLKSLT 334

Query: 352 LKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFD--GLSSLNTVDLSHNLLTFDEYQ 409
           L  N+       V L  L+ LDLS N L      ++   G +SL  +DLS N        
Sbjct: 335 LTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-- 392

Query: 410 YGYSPLKQCVNLETINLSYNRISSLFD-DWISSMTSLKELDLRHNNFSFIPDQLDSIVSN 468
              +       L+ ++  ++ +  + +     S+  L  LD+ + N     D +   +++
Sbjct: 393 ---ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 469 KLTLDLSFNQI 479
             TL ++ N  
Sbjct: 450 LNTLKMAGNSF 460

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  186 bits (473), Expect = 7e-51
 Identities = 67/397 (16%), Positives = 143/397 (36%), Gaps = 35/397 (8%)

Query: 104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVA 163
                   K ++ +  DI       ++++L  N +  L S  F    +LQ LDL   ++ 
Sbjct: 14  ITYQCMDQK-LSKVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE 69

Query: 164 YMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRK 223
            ++ + +  L  L  L L  N + + +   F+ + +L +L      ++ L S     L  
Sbjct: 70  TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129

Query: 224 LQTFYANSNRFQMFPK-DLFAEMKYLQVIKISYHKDSLKELPSGLFANL----PLLNTVI 278
           L+      N          F+ +  L  + +SY  + ++ +       L     +  ++ 
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY--NYIQTITVNDLQFLRENPQVNLSLD 187

Query: 279 LGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN------K 332
           +  + I  +    F     +  + L G+   +++  T  ++   L    L          
Sbjct: 188 MSLNPIDFIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246

Query: 333 LKYLPENLFESLKELYTLNLKNNQLE----NITSLVGLSGLNSLDLSWNQLEQINLIAFD 388
           L+    ++ E L ++     +         +I     L+ ++++ L+   ++ +  +   
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK- 305

Query: 389 GLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKEL 448
                 ++ +    L          P      L+++ L+ N+ S  F     ++ SL  L
Sbjct: 306 -HFKWQSLSIIRCQLK-------QFPTLDLPFLKSLTLTMNKGSISFK--KVALPSLSYL 355

Query: 449 DLRHNNFSFIPDQLDSIVSNK--LTLDLSFNQIAIVD 483
           DL  N  SF      S +       LDLSFN   I+ 
Sbjct: 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS 392

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  180 bits (459), Expect = 5e-49
 Identities = 91/514 (17%), Positives = 164/514 (31%), Gaps = 66/514 (12%)

Query: 73  NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
            I TI   A+               +   SP  F GL  +++++    K +  L      
Sbjct: 67  EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIG 125

Query: 124 GTPQLESLNLRGNSITEL-YSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI---- 178
               L+ LN+  N I        F  +  L  +DL  N +  +     + L         
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185

Query: 179 LNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS-ILPSGVFSDLRKLQT------FYANS 231
           L++  N +  +    F     L  L + GN  S  +      +L  L         + + 
Sbjct: 186 LDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244

Query: 232 NRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDL 291
              ++F   +   +  + + +      +        F  L  ++ + L   SI  L    
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP 304

Query: 292 FWNS--------TNITNIVLTGHKKLTSL--------PSTLFRDCKKLVKLELQRNKLKY 335
                         +          L SL         S        L  L+L RN L +
Sbjct: 305 KHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSF 364

Query: 336 LPENLFESLK--ELYTLNLKNNQLENITS-LVGLSGLNSLDLSWNQLEQI-NLIAFDGLS 391
                +  L    L  L+L  N    +++  +GL  L  LD   + L+++    AF  L 
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424

Query: 392 SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISS-LFDDWISSMTSLKELDL 450
            L  +D+S+     D             +L T+ ++ N        +  ++ T+L  LDL
Sbjct: 425 KLLYLDISYTNTKIDFD----GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

Query: 451 RHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVD---------LRTL-----EIKAAAQDP 496
                  I   +   +     L++S N +  +D         L TL      I+      
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET----S 536

Query: 497 NEDSTMVARSANIVILNDNPIACNCSNYDLIRFV 530
                   +S     L +N +AC C +   +++V
Sbjct: 537 KGILQHFPKSLAFFNLTNNSVACICEHQKFLQWV 570

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  164 bits (416), Expect = 4e-43
 Identities = 69/350 (19%), Positives = 138/350 (39%), Gaps = 17/350 (4%)

Query: 61  PDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNK-EITGLHK 119
             +  +   + L++  +    F +   N+ +  P   +GL  V                 
Sbjct: 220 IMKTCLQNLAGLHVHRLILGEFKDER-NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278

Query: 120 DIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRIL 179
             F     + +++L G SI  L      +  K Q L +    +         +L  L+ L
Sbjct: 279 VKFHCLANVSAMSLAGVSIKYLEDVPKHF--KWQSLSIIRCQLKQFP---TLDLPFLKSL 333

Query: 180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDL--RKLQTFYANSNRFQMF 237
            L  N+     +     +P+L  LD+S N +S      +SDL    L+    + N   + 
Sbjct: 334 TLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM 391

Query: 238 PKDLFAEMKYLQVIKISYHKDSLKELPS-GLFANLPLLNTVILGESSIAELPSDLFWNST 296
             + F  ++ LQ +   +    LK +     F +L  L  + +  ++       +F   T
Sbjct: 392 SAN-FMGLEELQHLDFQHST--LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448

Query: 297 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 356
           ++  + + G+    +  S +F +   L  L+L + +L+ +   +F++L  L  LN+ +N 
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508

Query: 357 LENIT--SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT 404
           L  +       L  L++LD S+N++E    I      SL   +L++N + 
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  139 bits (352), Expect = 8e-35
 Identities = 69/395 (17%), Positives = 134/395 (33%), Gaps = 22/395 (5%)

Query: 16  NSLEIDCSHFVGVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNIT 75
           NS  I  +    +         + +   E+NL  F             +   L +  N  
Sbjct: 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL-TYTNDF 274

Query: 76  TINTLAFSNSP-------SNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQL 128
           + + + F           + V +            + + +   +    L +      P L
Sbjct: 275 SDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQ----LKQFPTLDLPFL 330

Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNL--TSLRILNLDHNQL 186
           +SL L  N  +  +      +P L  LDL  N +++     + +L   SLR L+L  N  
Sbjct: 331 KSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388

Query: 187 INLTRAIFNNVPNLRSLDISGNNIS-ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEM 245
           I ++   F  +  L+ LD   + +  +     F  L KL     +    ++    +F  +
Sbjct: 389 IIMSAN-FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447

Query: 246 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG 305
             L  +K++ +        S +FAN   L  + L +  + ++   +F     +  + +  
Sbjct: 448 TSLNTLKMAGNSFK-DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM-S 505

Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG 365
           H  L  L S+ +     L  L+   N+++     L    K L   NL NN +  I     
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQK 565

Query: 366 LSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSH 400
              L  +      L  +  +       +NT  +  
Sbjct: 566 F--LQWVKEQKQFLVNVEQMTCATPVEMNTSLVLD 598

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  111 bits (279), Expect = 1e-25
 Identities = 60/383 (15%), Positives = 124/383 (32%), Gaps = 61/383 (15%)

Query: 275 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 334
            T    +  ++++P D+    ++  NI L+    L  L S  F +  +L  L+L R +++
Sbjct: 14  ITYQCMDQKLSKVPDDIP---SSTKNIDLS-FNPLKILKSYSFSNFSELQWLDLSRCEIE 69

Query: 335 YLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSS 392
            + +  +  L  L  L L  N +++    S  GL+ L +L     +L  +       L +
Sbjct: 70  TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129

Query: 393 LNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLK----EL 448
           L  ++++HN +   +     +      NL  ++LSYN I ++  + +  +         L
Sbjct: 130 LKKLNVAHNFIHSCKLP---AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186

Query: 449 DLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSAN 508
           D+  N   FI DQ    +     L L  N  +              +  +         +
Sbjct: 187 DMSLNPIDFIQDQAFQGIKLH-ELTLRGNFNS-------------SNIMKTCLQNLAGLH 232

Query: 509 IVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLT 568
           +  L         +       + + +         L   N            S       
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN----------DFSDDIVK-- 280

Query: 569 CDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINH 628
                        F    ++ +++ +  S+ ++ D               L +    +  
Sbjct: 281 -------------FHCLANVSAMSLAGVSIKYLEDVPKHF------KWQSLSIIRCQLKQ 321

Query: 629 FLESPPESYKLITDLDLSYNNIS 651
           F   P      +  L L+ N  S
Sbjct: 322 F---PTLDLPFLKSLTLTMNKGS 341

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  191 bits (488), Expect = 3e-54
 Identities = 80/397 (20%), Positives = 153/397 (38%), Gaps = 45/397 (11%)

Query: 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSI-TELYSGVFQYVPKLQVLDLGSND 161
           V ++ LS N  I  L++  F     L+ L +   +    + +  F+ +  L +L L  N 
Sbjct: 32  VNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 162 VAYMDPEIFKNLTSLRILNLDHNQL--INLTRAIFNNVPNLRSLDISGNNI-SILPSGVF 218
              ++   F  L +L +L L    L    L+   F  + +L  L +  NNI  I P+  F
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 219 SDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELP--------SGLFAN 270
            ++R+        N+ +   ++     +      +     +L+++          G    
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210

Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 330
              + T+ L  +   E  +  F+++   T I             +L       +      
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKI------------QSLILSNSYNMGSSFGH 258

Query: 331 NKLKYLPENLFESLK--ELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIA 386
              K      F+ L+   + T +L  +++  +  +     + L  L L+ N++ +I+  A
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA 318

Query: 387 FDGLSSLNTVDLSHNLLT------FDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWIS 440
           F GL+ L  ++LS N L       F+              LE ++LSYN I +L D    
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSRMFE----------NLDKLEVLDLSYNHIRALGDQSFL 368

Query: 441 SMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFN 477
            + +LKEL L  N    +PD +   +++   + L  N
Sbjct: 369 GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  189 bits (481), Expect = 4e-53
 Identities = 79/374 (21%), Positives = 139/374 (37%), Gaps = 49/374 (13%)

Query: 92  LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
           L+   F  L  ++ + +        +  + F+G   L  L L  N   +L +G F  +  
Sbjct: 45  LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104

Query: 152 LQVLDLGSN--DVAYMDPEIFKNLTSLRILNLDHNQLINLT-RAIFNNVPNLRSLDISGN 208
           L+VL L     D A +    FK LTSL +L L  N +  +   + F N+     LD++ N
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164

Query: 209 NISILPSGVFSDLRKL----------QTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKD 258
            +  +      + +                 N             +   +  + +S +  
Sbjct: 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG- 223

Query: 259 SLKELPSGLFANLPLLNTVI-------------LGESSIAELPSDLFWN--STNITNIVL 303
             KE  +  F +      +               G ++  +  +  F    ++ +    L
Sbjct: 224 -FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282

Query: 304 TGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL 363
           +   K+ +L  ++F     L +L L +N++  + +N F  L  L  LNL  N L +I S 
Sbjct: 283 S-KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341

Query: 364 V--GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT------FDEYQYGYSPL 415
           +   L  L  LDLS+N +  +   +F GL +L  + L  N L       FD        L
Sbjct: 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD-------RL 394

Query: 416 KQCVNLETINLSYN 429
               +L+ I L  N
Sbjct: 395 T---SLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  127 bits (322), Expect = 9e-32
 Identities = 54/317 (17%), Positives = 110/317 (34%), Gaps = 32/317 (10%)

Query: 67  SLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKD-IFKGT 125
             F+ L    +  L  +    +  VLS  +F  L  ++ ++L  N  I  +     F   
Sbjct: 97  GAFNGL--ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNM 153

Query: 126 PQLESLNLRGNSITELYSGVFQYVPK--LQVLDLGSNDVAYMDP--------EIFKNLTS 175
            +   L+L  N +  +              +L L S  +  M+               TS
Sbjct: 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213

Query: 176 LRILNLDHNQLINLTRAIFNNVPNLRSL-------------DISGNNISILPSGVFSDLR 222
           +  L+L  N         F +      +                  N     +  F  L 
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273

Query: 223 --KLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILG 280
              ++T   + ++     K +F+    L+ + ++ ++  + ++    F  L  L  + L 
Sbjct: 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE--INKIDDNAFWGLTHLLKLNLS 331

Query: 281 ESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENL 340
           ++ +  + S +F N   +  + L  +  + +L    F     L +L L  N+LK +P+ +
Sbjct: 332 QNFLGSIDSRMFENLDKLEVLDL-SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI 390

Query: 341 FESLKELYTLNLKNNQL 357
           F+ L  L  + L  N  
Sbjct: 391 FDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  112 bits (281), Expect = 2e-26
 Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 8/183 (4%)

Query: 60  LPDENFISLFSKLNITTINTLAFSN-----SPSNVGVLSPPYFDGLHF--VKHILLSHNK 112
              + F    +   I ++      N       +N        F GL    VK   LS +K
Sbjct: 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286

Query: 113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN 172
            I  L K +F     LE L L  N I ++    F  +  L  L+L  N +  +D  +F+N
Sbjct: 287 -IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345

Query: 173 LTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN 232
           L  L +L+L +N +  L    F  +PNL+ L +  N +  +P G+F  L  LQ  + ++N
Sbjct: 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

Query: 233 RFQ 235
            + 
Sbjct: 406 PWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  104 bits (260), Expect = 1e-23
 Identities = 66/365 (18%), Positives = 120/365 (32%), Gaps = 40/365 (10%)

Query: 296 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
           + I    +  ++ L  +P  L      +  ++L  N +  L E  F  L++L  L ++  
Sbjct: 9   SVIGYNAICINRGLHQVPE-LPAH---VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ 64

Query: 356 QLENITS---LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGY 412
               +       GLS L  L L +NQ  Q+   AF+GL++L  + L+   L        +
Sbjct: 65  TPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNF 124

Query: 413 SPLKQCVNLETINLSYNRISSLFDDWI-SSMTSLKELDLRHNNFSFIP-DQLDSIVSNKL 470
              K   +LE + L  N I  +       +M     LDL  N    I  + L +      
Sbjct: 125 --FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182

Query: 471 T-LDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRF 529
           T L LS   +  ++   L            +     S   + L+ N    + +       
Sbjct: 183 TLLRLSSITLQDMNEYWL------GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF--- 233

Query: 530 VSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIM 589
                        ++ +  L    N G                  P            + 
Sbjct: 234 -------DAIAGTKIQSLILSNSYNMGSS--------FGHTNFKDPDNFTFKGLEASGVK 278

Query: 590 SVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNN 649
           + + S + +  +   +   + D +    QL L  N IN   ++       +  L+LS N 
Sbjct: 279 TCDLSKSKIFALLKSVFSHFTDLE----QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334

Query: 650 ISHVD 654
           +  +D
Sbjct: 335 LGSID 339

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  101 bits (254), Expect = 4e-23
 Identities = 55/276 (19%), Positives = 99/276 (35%), Gaps = 24/276 (8%)

Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
            L ++P  L A++  ++   L  +SIAEL    F    ++  + +        + +  FR
Sbjct: 21  GLHQVPE-LPAHVNYVD---LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR 76

Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT----SLVGLSGLNSLDL 374
               L+ L+L  N+   L    F  L  L  L L    L+           L+ L  L L
Sbjct: 77  GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136

Query: 375 SWNQLEQINL-IAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISS 433
             N +++I     F  +   + +DL+ N +     +   +   +  +   + LS   +  
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK--HFTLLRLSSITLQD 194

Query: 434 LFDDWISS--------MTSLKELDLRHNNFSFIPDQ--LDSIVSNKL-TLDLSFNQIAIV 482
           + + W+           TS+  LDL  N F     +   D+I   K+ +L LS +     
Sbjct: 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254

Query: 483 DLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIA 518
                  K    D      + A       L+ + I 
Sbjct: 255 SFGHTNFKDP--DNFTFKGLEASGVKTCDLSKSKIF 288

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 14/79 (17%)

Query: 573 PCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLES 632
           P  + C           +  C +  L  +P+ LP            + L  NSI    E+
Sbjct: 3   PGTSECSVIGY------NAICINRGLHQVPE-LPAHVN-------YVDLSLNSIAELNET 48

Query: 633 PPESYKLITDLDLSYNNIS 651
                + +  L +      
Sbjct: 49  SFSRLQDLQFLKVEQQTPG 67

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  194 bits (495), Expect = 4e-54
 Identities = 81/412 (19%), Positives = 150/412 (36%), Gaps = 27/412 (6%)

Query: 92  LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
           L    F     ++ + LS  + I  +    ++    L +L L GN I  L  G F  +  
Sbjct: 43  LGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTR-AIFNNVPNLRSLDISGNNI 210
           LQ L     ++A ++     +L +L+ LN+ HN + +      F+N+ NL  LD+S N I
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 211 SILPSGVFSDLRKLQTFYA----NSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSG 266
             +       L ++         + N         F E++ L  + +  + DSL  +   
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSL-NVMKT 219

Query: 267 LFANLP------LLNTVILGESSIAELPSDLFWNSTNIT--NIVLTGHKKLTSLPSTLFR 318
               L       L+      E ++ +          N+T     L            LF 
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 319 DCKKLVKLELQRNKLKYLPENLFE-SLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWN 377
               +    L    ++ + +  +    + L  +N K  Q   +     L  L  L  + N
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL----KLKSLKRLTFTSN 335

Query: 378 QLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDD 437
           +    N  +   L SL  +DLS N L+F              +L+ ++LS+N + ++  +
Sbjct: 336 KG--GNAFSEVDLPSLEFLDLSRNGLSFKG--CCSQSDFGTTSLKYLDLSFNGVITMSSN 391

Query: 438 WISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLT-LDLSFNQIAIVDLRTLE 488
               +  L+ LD +H+N   + +    +    L  LD+S     +       
Sbjct: 392 -FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  177 bits (450), Expect = 5e-48
 Identities = 91/501 (18%), Positives = 163/501 (32%), Gaps = 67/501 (13%)

Query: 73  NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
            I TI   A+ +             +  L+   F GL  ++ ++      +  L      
Sbjct: 63  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIG 121

Query: 124 GTPQLESLNLRGNSITELYSG-VFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI---- 178
               L+ LN+  N I        F  +  L+ LDL SN +  +     + L  + +    
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 179 LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI-LPSGVFSDLRKLQT------FYANS 231
           L+L  N +  +    F     L  L +  N  S+ +       L  L+        + N 
Sbjct: 182 LDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 232 NRFQMFPKDLFAEMKYLQVIKISYHK-DSLKELPSGLFANLPLLNTVILGESSIAELPSD 290
              + F K     +  L + +      D   +    LF  L  +++  L   +I  +   
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300

Query: 291 LFWNS-----------TNITNIVLTG-------HKKLTSLPSTLFRDCKKLVKLELQRNK 332
            +                   + L           K  +  S    D   L  L+L RN 
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNG 358

Query: 333 L--KYLPENLFESLKELYTLNLKNNQLENITS-LVGLSGLNSLDLSWNQLEQI-NLIAFD 388
           L  K            L  L+L  N +  ++S  +GL  L  LD   + L+Q+     F 
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 389 GLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRI-SSLFDDWISSMTSLKE 447
            L +L  +D+SH                   +LE + ++ N    +   D  + + +L  
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGI----FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 448 LDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSA 507
           LDL       +     + +S+   L+++ NQ+  V     +                 S 
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR--------------LTSL 520

Query: 508 NIVILNDNPIACNCSNYDLIR 528
             + L+ NP  C+C   D + 
Sbjct: 521 QKIWLHTNPWDCSCPRIDYLS 541

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  174 bits (443), Expect = 5e-47
 Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 53/394 (13%)

Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
              ++L+L  N +  L S  F   P+LQVLDL   ++  ++   +++L+ L  L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPK-DLFAE 244
           + +L    F+ + +L+ L     N++ L +     L+ L+      N  Q F   + F+ 
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 245 MKYLQVIKISYHKDSLKELPSGLFANLP----LLNTVILGESSIAELPSDLFWNSTNITN 300
           +  L+ + +S +K  ++ +       L     L  ++ L  + +  +    F     +  
Sbjct: 148 LTNLEHLDLSSNK--IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHK 204

Query: 301 IVLTGHKKLTSLPSTLFRDCKKLVKLELQR------NKLKYLPENLFESLKELYTLN--- 351
           + L  +    ++  T  +    L    L          L+   ++  E L  L       
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 352 ------------------------LKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAF 387
                                   L +  +E +       G   L+L      +      
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC---KFGQFPT 321

Query: 388 DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS--SLFDDWISSMTSL 445
             L SL  +  + N                  +LE ++LS N +S            TSL
Sbjct: 322 LKLKSLKRLTFTSNKGGNA------FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 446 KELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
           K LDL  N    +      +      LD   + +
Sbjct: 376 KYLDLSFNGVITMSSNFLGL-EQLEHLDFQHSNL 408

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  123 bits (311), Expect = 8e-30
 Identities = 75/490 (15%), Positives = 167/490 (34%), Gaps = 66/490 (13%)

Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
           N  +   N   + ++LD+S N +  L S  F    +LQ    +    Q      +  + +
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHK 307
           L  + ++ +   ++ L  G F+ L  L  ++  E+++A L +    +   +  + +  H 
Sbjct: 78  LSTLILTGNP--IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV-AHN 134

Query: 308 KLTSLP-STLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGL 366
            + S      F +   L  L+L  NK++ +       L ++  LNL              
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL-------------- 180

Query: 367 SGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQ---YGYSPLKQCVNLET 423
               SLDLS N +  I   AF  +  L+ + L +N  + +  +    G + L+    +  
Sbjct: 181 ----SLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 424 INLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTL---DLSFNQIA 480
              +   +       +  + +L   + R     +  D +  + +    +    L    I 
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI- 294

Query: 481 IVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQ 540
                   +K  + +              + L +               +  K  K +  
Sbjct: 295 ------ERVKDFSYNFGWQH---------LELVNCKFGQ-------FPTLKLKSLKRLT- 331

Query: 541 MLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTH 600
                T N      + V + S+   +L+ +       C  +     S+  ++ S   +  
Sbjct: 332 ----FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 601 MPDYLPVTYEDKKATSIQ-LILHNNSINHFLE-SPPESYKLITDLDLSYNNISHVDT-MY 657
           M               ++ L   ++++    E S   S + +  LD+S+ +       ++
Sbjct: 388 MSSNFL------GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 658 PYLNHLELID 667
             L+ LE++ 
Sbjct: 442 NGLSSLEVLK 451

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  116 bits (293), Expect = 2e-27
 Identities = 77/405 (19%), Positives = 153/405 (37%), Gaps = 24/405 (5%)

Query: 275 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 334
            T    E +  ++P +L     +  N+ L+    L  L S  F    +L  L+L R +++
Sbjct: 10  ITYQCMELNFYKIPDNLP---FSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 335 YLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSS 392
            + +  ++SL  L TL L  N ++++   +  GLS L  L      L  +       L +
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 393 LNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLK----EL 448
           L  ++++HNL+   +            NLE ++LS N+I S++   +  +  +      L
Sbjct: 126 LKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 449 DLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSAN 508
           DL  N  +FI       +     L L  N  ++  ++T     A  + +       R+  
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLH-KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 509 IVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLEL--VTDNLECFGNAGVGINSVRPEN 566
            +   D        N  +  F    +   +  +++L     N+  F    V I  V  ++
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV--KD 299

Query: 567 LTCDTKPCPARCYCNFSPYYSIMSVNCSS-ASLTHMPDYLPVTYEDKKATSIQ-LILHNN 624
            + +              +    ++   S   LT   +     + +    S++ L L  N
Sbjct: 300 FSYNFGWQHLELVNC--KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357

Query: 625 SINHFLESPPESYKL--ITDLDLSYNNISHVDTMYPYLNHLELID 667
            ++         +    +  LDLS+N +  + + +  L  LE +D
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  113 bits (285), Expect = 1e-26
 Identities = 47/218 (21%), Positives = 84/218 (38%), Gaps = 4/218 (1%)

Query: 39  YDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFD 98
                          +            + FS++++ ++  L  S +  +          
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 99  GLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITEL-YSGVFQYVPKLQVLDL 157
           G   +K++ LS N  +  +  + F G  QLE L+ + +++ ++    VF  +  L  LD+
Sbjct: 371 GTTSLKYLDLSFNG-VITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 158 GSNDVAYMDPEIFKNLTSLRILNLDHNQL-INLTRAIFNNVPNLRSLDISGNNISILPSG 216
                      IF  L+SL +L +  N    N    IF  + NL  LD+S   +  L   
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 217 VFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKIS 254
            F+ L  LQ     SN+ +  P  +F  +  LQ I + 
Sbjct: 489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  108 bits (271), Expect = 9e-25
 Identities = 82/488 (16%), Positives = 157/488 (32%), Gaps = 71/488 (14%)

Query: 226 TFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA 285
           T+      F   P +L    K L +       + L+ L S  F + P L  + L    I 
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNLDL-----SFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 286 ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLK 345
            +    + + ++++ ++LT    + SL    F     L KL      L  L       LK
Sbjct: 66  TIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 346 ELYTLNLKNNQLENI---TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSL----NTVDL 398
            L  LN+ +N +++         L+ L  LDLS N+++ I       L  +     ++DL
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 399 SHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS-SLFDDWISSMTSLKELDLRHNNFSF 457
           S N + F +         + + L  + L  N  S ++    I  +  L+   L    F  
Sbjct: 185 SLNPMNFIQ-----PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 458 IPDQLDSIVSNKLT----LDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILN 513
               L+    + L     L +   ++A +D    +I          S+    S  I  + 
Sbjct: 240 EG-NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 514 DNPIACNCSNYDLIRFVSKKMTKTVYQMLELVT--DNLECFGNAGVGINSVRPENLTCDT 571
           D        + +L+     +      + L+ +T   N      + V + S+   +L+ + 
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358

Query: 572 KPCPARCYCNFSPYYSIMSVNCSSASLTHMPD-------------------YLPVTYEDK 612
                 C  +     S+  ++ S   +  M                      +       
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 613 KATSIQ-LILHNNSI---------------------NHFLESPPESY----KLITDLDLS 646
              ++  L + +                        N F E+         + +T LDLS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 647 YNNISHVD 654
              +  + 
Sbjct: 479 QCQLEQLS 486

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  193 bits (492), Expect = 1e-53
 Identities = 91/431 (21%), Positives = 158/431 (36%), Gaps = 82/431 (19%)

Query: 57  FCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITG 116
            C   +  +  +F  ++I       +                 L+  K +   ++  +  
Sbjct: 17  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFE----------DITLNNQKIVTFKNST-MRK 65

Query: 117 LHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSL 176
           L   +     Q+E LNL    I E+ +  F Y   +Q L +G N + Y+ P +F+N+  L
Sbjct: 66  LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125

Query: 177 RILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM 236
            +L L+ N L +L R IF+N P L +L +S NN+  +    F     LQ    +SNR   
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--- 182

Query: 237 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 296
                                  L  +   L  +L   N               + +N  
Sbjct: 183 -----------------------LTHVDLSLIPSLFHAN---------------VSYN-- 202

Query: 297 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 356
                       L++L   +      + +L+   N +  +   +   L     L L++N 
Sbjct: 203 -----------LLSTLAIPIA-----VEELDASHNSINVVRGPVNVELT---ILKLQHNN 243

Query: 357 LENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLK 416
           L +   L+   GL  +DLS+N+LE+I    F  +  L  + +S+N L            +
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-----LYGQ 298

Query: 417 QCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSF 476
               L+ ++LS+N +  +  +       L+ L L HN+   +     S       L LS 
Sbjct: 299 PIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSH 354

Query: 477 NQIAIVDLRTL 487
           N      LR L
Sbjct: 355 NDWDCNSLRAL 365

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  186 bits (473), Expect = 5e-51
 Identities = 76/422 (18%), Positives = 156/422 (36%), Gaps = 90/422 (21%)

Query: 105 HILLSHNKEITGLHKDIFKGT-----PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGS 159
           +  + ++  I    +D++ G         + +  + +++ +L + +     ++++L+L  
Sbjct: 25  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 84

Query: 160 NDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFS 219
             +  +D   F    +++ L +  N +  L   +F NVP L  L +  N++S LP G+F 
Sbjct: 85  LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 144

Query: 220 DLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVIL 279
           +  KL T   ++N  +    D F     LQ +++S ++  L  +   L  +L   N    
Sbjct: 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVDLSLIPSLFHAN---- 198

Query: 280 GESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN 339
                      + +N              L++L   +      + +L+   N +  +   
Sbjct: 199 -----------VSYN-------------LLSTLAIPIA-----VEELDASHNSINVVRGP 229

Query: 340 LFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLS 399
           +   L     L L++N L +   L+   GL  +DLS+N+LE+I    F  +  L  + +S
Sbjct: 230 VNVELT---ILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286

Query: 400 HNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP 459
           +N L            +    L+ ++LS+N +  +  +       L+ L L HN+   + 
Sbjct: 287 NNRLVALN-----LYGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK 340

Query: 460 DQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIAC 519
                                   L+ L                        L+ N   C
Sbjct: 341 LS------------------THHTLKNLT-----------------------LSHNDWDC 359

Query: 520 NC 521
           N 
Sbjct: 360 NS 361

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  143 bits (362), Expect = 3e-36
 Identities = 64/327 (19%), Positives = 124/327 (37%), Gaps = 36/327 (11%)

Query: 180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFS-----DLRKLQTFYANSNRF 234
              +N           +            +I +    V+       L   +     ++  
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 235 QMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWN 294
           +  P  L    + ++++ ++  +  ++E+ +  FA    +  + +G ++I  LP  +F N
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121

Query: 295 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 354
              +T +VL     L+SLP  +F +  KL  L +  N L+ + ++ F++   L  L L +
Sbjct: 122 VPLLTVLVL-ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180

Query: 355 NQLE------------------NITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTV 396
           N+L                    +++L     +  LD S N +  +       L+ L   
Sbjct: 181 NRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL--- 237

Query: 397 DLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFS 456
            L HN LT        + L     L  ++LSYN +  +       M  L+ L + +N   
Sbjct: 238 KLQHNNLT------DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291

Query: 457 FIPDQLDSIVSNKLTLDLSFNQIAIVD 483
            +      I + K  LDLS N +  V+
Sbjct: 292 ALNLYGQPIPTLK-VLDLSHNHLLHVE 317

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 94.2 bits (234), Expect = 3e-20
 Identities = 35/194 (18%), Positives = 73/194 (37%), Gaps = 17/194 (8%)

Query: 302 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY-----TLNLKNNQ 356
           V     +   + S L  DC            +    ++++   +++       +  KN+ 
Sbjct: 9   VKPRQPEYKCIDSNLQYDC------VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST 62

Query: 357 LENITS--LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSP 414
           +  + +  L     +  L+L+  Q+E+I+  AF    ++  + +  N + +         
Sbjct: 63  MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP----PHV 118

Query: 415 LKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDL 474
            +    L  + L  N +SSL      +   L  L + +NN   I D      ++   L L
Sbjct: 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178

Query: 475 SFNQIAIVDLRTLE 488
           S N++  VDL  + 
Sbjct: 179 SSNRLTHVDLSLIP 192

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  181 bits (461), Expect = 9e-52
 Identities = 67/304 (22%), Positives = 121/304 (39%), Gaps = 25/304 (8%)

Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEI 169
            +  +  + KD+   T     L+L+ N ITE+  G F+ +  L  L L +N ++ + P  
Sbjct: 39  SDLGLEKVPKDLPPDT---ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 95

Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYA 229
           F  L  L  L L  NQL  L   +      L+ L +  N I+ +   VF+ L ++     
Sbjct: 96  FAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152

Query: 230 NSNRFQ--MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
            +N  +        F  MK L  I+I+     +  +P GL  +L  L+   L  + I ++
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTN--ITTIPQGLPPSLTELH---LDGNKITKV 207

Query: 288 PSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKEL 347
            +       N+  + L     ++++ +    +   L +L L  NKL  +P  L    K +
Sbjct: 208 DAASLKGLNNLAKLGL-SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA-DHKYI 265

Query: 348 YTLNLKNNQLENITS--------LVGLSGLNSLDLSWNQLEQINL--IAFDGLSSLNTVD 397
             + L NN +  I S            +  + + L  N ++   +    F  +     V 
Sbjct: 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325

Query: 398 LSHN 401
           L + 
Sbjct: 326 LGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  173 bits (441), Expect = 7e-49
 Identities = 60/312 (19%), Positives = 123/312 (39%), Gaps = 21/312 (6%)

Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
            L  +      + ++   +    P   +LDL +N +  +    FKNL +L  L L +N++
Sbjct: 32  HLRVVQCSDLGLEKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 187 INLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
             ++   F  +  L  L +S N +  LP  +   L++L     + N      K +F  + 
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL---RVHENEITKVRKSVFNGLN 145

Query: 247 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGH 306
            + V+++  +      + +G F  +  L+ + + +++I  +P  L     ++T + L   
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHL-DG 201

Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS-LVG 365
            K+T + +   +    L KL L  N +  +      +   L  L+L NN+L  +   L  
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261

Query: 366 LSGLNSLDLSWNQLEQINLIAF------DGLSSLNTVDLSHNLLTFDEYQYG-YSPLKQC 418
              +  + L  N +  I    F         +S + V L  N + + E Q   +  +   
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY-- 319

Query: 419 VNLETINLSYNR 430
                + L   +
Sbjct: 320 -VRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  160 bits (407), Expect = 4e-44
 Identities = 70/338 (20%), Positives = 130/338 (38%), Gaps = 53/338 (15%)

Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS 211
           L+V+      +  +  ++  +   L   +L +N++  +    F N+ NL +L +  N IS
Sbjct: 33  LRVVQCSDLGLEKVPKDLPPDTALL---DLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 212 ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANL 271
            +  G F+ L KL+  Y + N+                          LKELP  +   L
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQ--------------------------LKELPEKMPKTL 123

Query: 272 PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTS--LPSTLFRDCKKLVKLELQ 329
             L    + E+ I ++   +F     +  + L G   L S  + +  F+  KKL  + + 
Sbjct: 124 QELR---VHENEITKVRKSVFNGLNQMIVVEL-GTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 330 RNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLSWNQLEQINLIAF 387
              +  +P+ L  SL EL+   L  N++  +   SL GL+ L  L LS+N +  ++  + 
Sbjct: 180 DTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236

Query: 388 DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWI------SS 441
                L  + L++N L           L     ++ + L  N IS++  +        + 
Sbjct: 237 ANTPHLRELHLNNNKLVKVP-----GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291

Query: 442 MTSLKELDLRHNN--FSFIPDQLDSIVSNKLTLDLSFN 477
             S   + L  N   +  I       V  +  + L   
Sbjct: 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  145 bits (367), Expect = 1e-38
 Identities = 55/296 (18%), Positives = 114/296 (38%), Gaps = 42/296 (14%)

Query: 73  NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
            IT I    F N  +          +  +SP  F  L  ++ + LS N+ +  L + + K
Sbjct: 63  KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPK 121

Query: 124 GTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSND--VAYMDPEIFKNLTSLRILNL 181
               L+ L +  N IT++   VF  + ++ V++LG+N    + ++   F+ +  L  + +
Sbjct: 122 T---LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

Query: 182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDL 241
               +  + + +    P+L  L + GN I+ + +     L  L     + N         
Sbjct: 179 ADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 242 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 301
            A   +L+ + ++ +K  L ++P G  A+   +  V L  ++I+ + S+ F         
Sbjct: 236 LANTPHLRELHLNNNK--LVKVPGG-LADHKYIQVVYLHNNNISAIGSNDF--------- 283

Query: 302 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY--LPENLFESLKELYTLNLKNN 355
                      P            + L  N ++Y  +  + F  +     + L N 
Sbjct: 284 ----------CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  114 bits (288), Expect = 5e-28
 Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 10/214 (4%)

Query: 274 LNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKL 333
           L  V   +  + ++P DL     +   + L  + K+T +    F++ K L  L L  NK+
Sbjct: 33  LRVVQCSDLGLEKVPKDLP---PDTALLDLQ-NNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 334 KYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSL 393
             +    F  L +L  L L  NQL+ +   +    L  L +  N++ ++    F+GL+ +
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKELPEKM-PKTLQELRVHENEITKVRKSVFNGLNQM 147

Query: 394 NTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHN 453
             V+L  N L     + G    +    L  I ++   I+++         SL EL L  N
Sbjct: 148 IVVELGTNPLKSSGIENGA--FQGMKKLSYIRIADTNITTIPQG---LPPSLTELHLDGN 202

Query: 454 NFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTL 487
             + +       ++N   L LSFN I+ VD  +L
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 13/82 (15%)

Query: 573 PCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLES 632
            CP RC C+         V CS   L  +P  LP         +  L L NN I    + 
Sbjct: 24  VCPFRCQCHLR------VVQCSDLGLEKVPKDLP-------PDTALLDLQNNKITEIKDG 70

Query: 633 PPESYKLITDLDLSYNNISHVD 654
             ++ K +  L L  N IS + 
Sbjct: 71  DFKNLKNLHTLILINNKISKIS 92

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  187 bits (476), Expect = 3e-51
 Identities = 78/408 (19%), Positives = 146/408 (35%), Gaps = 35/408 (8%)

Query: 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDV 162
            K++ LS N  +  L    F   P+L+ L+L    I  +  G +Q +  L  L L  N +
Sbjct: 30  TKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 163 AYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI-SILPSGVFSDL 221
             +    F  L+SL+ L      L +L      ++  L+ L+++ N I S      FS+L
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 222 RKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKD--SLKELPSGLFANLPLLNTVIL 279
             L+    +SN+ Q         +  + ++ +S       +  +  G F  + L    + 
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208

Query: 280 GESSIAELPSDLFWNSTNITNIVL-----TGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 334
                  +          +    L          L     +       L   E +   L 
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

Query: 335 YLPEN---LFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQI--------- 382
           Y  ++   LF  L  + + +L +  +E +       G   L+L   +  Q          
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 328

Query: 383 ----------NLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS 432
                     N  +   L SL  +DLS N L+F              +L+ ++LS+N + 
Sbjct: 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF--KGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 433 SLFDDWISSMTSLKELDLRHNNFS-FIPDQLDSIVSNKLTLDLSFNQI 479
           ++  ++   +  L+ LD +H+N        +   + N + LD+S    
Sbjct: 387 TMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  172 bits (437), Expect = 6e-46
 Identities = 90/468 (19%), Positives = 175/468 (37%), Gaps = 46/468 (9%)

Query: 90  GVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLE----SLNLRGNSITELYSGV 145
               P YF  L  ++H+ LS NK I  ++    +   Q+     SL+L  N +  +  G 
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 146 FQYVPKLQVLDLGSNDVAY-MDPEIFKNLTSLRILNLDHNQL---INLTRAIFNNVPNLR 201
           F+   +L  L L +N  +  +     + L  L +  L   +     NL +   + +  L 
Sbjct: 197 FK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 202 SLDISGNNISIL------PSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISY 255
           +L I    ++ L         +F+ L  + +F   S   +      F+     Q +++  
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVN 313

Query: 256 HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG-HKKLTSLPS 314
                 + P+    +L  L       +      S    +  ++  + L+          S
Sbjct: 314 C--KFGQFPTLKLKSLKRLT---FTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 315 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS---LVGLSGLNS 371
                   L  L+L  N +  +  N F  L++L  L+ +++ L+ ++     + L  L  
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 372 LDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRI 431
           LD+S           F+GLSSL  + ++ N        +      +  NL  ++LS  ++
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ---ENFLPDIFTELRNLTFLDLSQCQL 482

Query: 432 SSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKA 491
             L     +S++SL+ L++ HNNF  +       +++   LD S N I     + L+   
Sbjct: 483 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH-- 540

Query: 492 AAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVY 539
                         S   + L  N  AC C +   ++++  +    V 
Sbjct: 541 -----------FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE 577

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  163 bits (415), Expect = 5e-43
 Identities = 66/391 (16%), Positives = 126/391 (32%), Gaps = 47/391 (12%)

Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
              ++L+L  N +  L S  F   P+LQVLDL   ++  ++   +++L+ L  L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPK-DLFAE 244
           + +L    F+ + +L+ L     N++ L +     L+ L+      N  Q F   + F+ 
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 245 MKYLQVIKISY--------------------------HKDSLKELPSGLFANLPLLNTVI 278
           +  L+ + +S                             + +  +  G F  + L    +
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207

Query: 279 LGESSIAELPSDLFWNSTNITNIVL-----TGHKKLTSLPSTLFRDCKKLVKLELQRNKL 333
                   +          +    L          L     +       L   E +   L
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 334 KYLPENLFES---LKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGL 390
            Y  +++ +    L  + + +L +  +E +       G   L+L   +  Q   +    L
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327

Query: 391 SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS--SLFDDWISSMTSLKEL 448
             L                          +LE ++LS N +S            TSLK L
Sbjct: 328 KRLTFTSNKGGNAF---------SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 449 DLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
           DL  N    +      +      LD   + +
Sbjct: 379 DLSFNGVITMSSNFLGL-EQLEHLDFQHSNL 408

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  142 bits (359), Expect = 1e-35
 Identities = 60/349 (17%), Positives = 126/349 (36%), Gaps = 17/349 (4%)

Query: 63  ENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHF--VKHILLSHNKEITGLHKD 120
           +  I   + L +  +    F N   N+        +GL    ++   L++         D
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEG-NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276

Query: 121 IFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILN 180
           +F     + S +L   +I  +    + +    Q L+L +           K+L  L   +
Sbjct: 277 LFNCLTNVSSFSLVSVTIERVKDFSYNF--GWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334

Query: 181 LDHNQLINLTRAIFNNVPNLRSLDISGNNISI--LPSGVFSDLRKLQTFYANSNRFQMFP 238
                  +       ++P+L  LD+S N +S     S        L+    + N      
Sbjct: 335 NKGGNAFS-----EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389

Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 298
            + F  ++ L+ +   +     +     +F +L  L  + +  +      + +F   +++
Sbjct: 390 SN-FLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 299 TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 358
             + + G+    +    +F + + L  L+L + +L+ L    F SL  L  LN+ +N   
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 359 NIT--SLVGLSGLNSLDLSWNQLEQINLIAFDGL-SSLNTVDLSHNLLT 404
           ++       L+ L  LD S N +            SSL  ++L+ N   
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 98.9 bits (247), Expect = 9e-22
 Identities = 68/363 (18%), Positives = 124/363 (34%), Gaps = 35/363 (9%)

Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI--TSL 363
                 +P  L         L+L  N L++L    F S  EL  L+L   +++ I   + 
Sbjct: 16  ELNFYKIPDNLPFS---TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 364 VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLET 423
             LS L++L L+ N ++ + L AF GLSSL  +      L   E      P+     L+ 
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN----FPIGHLKTLKE 128

Query: 424 INLSYNRISSL-FDDWISSMTSLKELDLRHNNFSFIP----DQLDSIVSNKLTLDLSFNQ 478
           +N+++N I S    ++ S++T+L+ LDL  N    I       L  +    L+LDLS N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 479 IAIVD--------LRTLEIKAAAQDPNEDSTMVARSANIVILN--DNPIACNCSNYDLIR 528
           +  +         L  L ++      N   T +   A + +            +     +
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 529 FVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSI 588
              + +     +   L   +        +        +              +FS  +  
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF--SLVSVTIERVKDFSYNFGW 306

Query: 589 MSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYN 648
             +   +      P     + +       +L   +N   +           +  LDLS N
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLK-------RLTFTSNKGGNAF--SEVDLPSLEFLDLSRN 357

Query: 649 NIS 651
            +S
Sbjct: 358 GLS 360

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  187 bits (477), Expect = 3e-50
 Identities = 76/505 (15%), Positives = 170/505 (33%), Gaps = 42/505 (8%)

Query: 10  RLTKRSNSLEIDCSHFVGVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLF 69
             T        +       E         Y ++        N        +     +   
Sbjct: 358 SETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI 417

Query: 70  SKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLE 129
            K +  ++      N  + +  +       L  ++ I  +++   T  +  +       E
Sbjct: 418 KKDSRISLKDTQIGNLTNRITFI-SKAIQRLTKLQIIYFANSP-FTYDNIAVD-----WE 470

Query: 130 SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINL 189
             N       E     +  +  L  ++L +       P+   +L  L+ LN+  N+ I+ 
Sbjct: 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA 530

Query: 190 TRAI---------FNNVPNLRSLDISGNNISILP-SGVFSDLRKLQTFYANSNRFQMFPK 239
            +            +  P ++   +  NN+   P S     + KL       N+ +    
Sbjct: 531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE- 589

Query: 240 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS-TNI 298
             F     L  +K+ Y++  ++E+P    A    +  +    + +  +P+     S   +
Sbjct: 590 -AFGTNVKLTDLKLDYNQ--IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646

Query: 299 TNIVLTGHKKLTSLPSTLFRD-----CKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 353
            ++    + K+ S    +              + L  N+++  P  LF +   + T+ L 
Sbjct: 647 GSVDF-SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 354 NNQLENI---------TSLVGLSGLNSLDLSWNQLEQI-NLIAFDGLSSLNTVDLSHNLL 403
           NN + +I          +      L ++DL +N+L  + +      L  L+ +D+S+N  
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF 765

Query: 404 T-FDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQL 462
           + F       S LK        +   NRI   +   I++  SL +L +  N+   +    
Sbjct: 766 SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVD--- 822

Query: 463 DSIVSNKLTLDLSFNQIAIVDLRTL 487
           + +      LD++ N    +D+ ++
Sbjct: 823 EKLTPQLYILDIADNPNISIDVTSV 847

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  163 bits (415), Expect = 3e-42
 Identities = 75/413 (18%), Positives = 150/413 (36%), Gaps = 39/413 (9%)

Query: 94  PPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQ 153
           P     L  +K +    + E         +      S   +             Y  +L 
Sbjct: 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399

Query: 154 VLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAI------FNNVPNLRSLDISG 207
           + DL  + +   +PE+ K +     ++L   Q+ NLT  I         +  L+ +  + 
Sbjct: 400 LSDLLQDAIN-RNPEM-KPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457

Query: 208 NNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGL 267
           +  +     V  +         +  +     +  ++ +K L  +++ Y+  ++ +LP  L
Sbjct: 458 SPFTYDNIAVDWEDANS-----DYAKQYENEELSWSNLKDLTDVEL-YNCPNMTQLPDFL 511

Query: 268 FANLPLLNTVILGESSIAELPS---------DLFWNSTNITNIVLTGHKKLTSLP-STLF 317
           + +LP L ++ +  +                D       I    + G+  L   P S   
Sbjct: 512 Y-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM-GYNNLEEFPASASL 569

Query: 318 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG--LSGLNSLDLS 375
           +   KL  L+   NK+++L    F +  +L  L L  NQ+E I          +  L  S
Sbjct: 570 QKMVKLGLLDCVHNKVRHLEA--FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS 627

Query: 376 WNQLEQI-NLIAFDGLSSLNTVDLSHNLLT-FDEYQYGYSPLKQCVNLETINLSYNRISS 433
            N+L+ I N+     +  + +VD S+N +              + +N  T+ LSYN I  
Sbjct: 628 HNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK 687

Query: 434 LFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKL-------TLDLSFNQI 479
              +  ++ + +  + L +N  + IP+                 T+DL FN++
Sbjct: 688 FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  146 bits (371), Expect = 8e-37
 Identities = 54/378 (14%), Positives = 126/378 (33%), Gaps = 41/378 (10%)

Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
           ++  L+L G             + +L+VL  G++              +  +     +++
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 187 -INLTRAIFNNVPNLRSLDISGN------NISILPSGVFSDLRKLQTFYANSNRFQMFPK 239
            ++  +   +    L   D+  +       +  +       L+  Q     +NR     K
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ-IGNLTNRITFISK 442

Query: 240 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNIT 299
                +  LQ+I  +            +       +     E+         + N  ++T
Sbjct: 443 A-IQRLTKLQIIYFANSP--FTYDNIAVDWEDANSDYAKQYENEELS-----WSNLKDLT 494

Query: 300 NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE---------NLFESLKELYTL 350
           ++ L     +T LP  L+ D  +L  L +  N+     +         +  ++  ++   
Sbjct: 495 DVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

Query: 351 NLKNNQLENI---TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDE 407
            +  N LE      SL  +  L  LD   N++  +   AF     L  + L +N +    
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIE--- 608

Query: 408 YQYGYSPLKQCVNLETINLSYNRISSLFDDW-ISSMTSLKELDLRHNNFSFIPDQLDSIV 466
            +           +E +  S+N++  + + +   S+  +  +D  +N        +   +
Sbjct: 609 -EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667

Query: 467 SNKL-----TLDLSFNQI 479
            +       T+ LS+N+I
Sbjct: 668 DDYKGINASTVTLSYNEI 685

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  124 bits (312), Expect = 2e-29
 Identities = 47/327 (14%), Positives = 99/327 (30%), Gaps = 31/327 (9%)

Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYA 229
             N   +  L+L               +  L+ L    ++ ++       +         
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 230 NSNRFQM-FPKDLFAEMKYLQVIKISYHKDS----LKELPSGLFANLPLLNTVILGESSI 284
             +R +M + K      + L +  +     +    +K +      +L       L  + I
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL-TNRI 437

Query: 285 AELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESL 344
             +   +    T +  I        T     +               K     E  + +L
Sbjct: 438 TFISKAIQ-RLTKLQIIYFANS-PFTYDNIAVD-----WEDANSDYAKQYENEELSWSNL 490

Query: 345 KELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLI---------AFDGLSSL 393
           K+L  + L N          L  L  L SL+++ N+      +           D    +
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 394 NTVDLSHNLLT-FDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRH 452
               + +N L  F       + L++ V L  ++  +N++  L  +   +   L +L L +
Sbjct: 551 QIFYMGYNNLEEFPA----SASLQKMVKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDY 604

Query: 453 NNFSFIPDQLDSIVSNKLTLDLSFNQI 479
           N    IP+   +       L  S N++
Sbjct: 605 NQIEEIPEDFCAFTDQVEGLGFSHNKL 631

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  118 bits (297), Expect = 1e-27
 Identities = 39/313 (12%), Positives = 84/313 (26%), Gaps = 21/313 (6%)

Query: 179 LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP 238
            N + +   +      +N   +  L ++G             L +L+     ++   +  
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 298
           +    E     + +   H+  +             LN   L + +I   P        + 
Sbjct: 364 RLFGDEELTPDMSEERKHRIRM-HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 299 TNIVLTGHK----KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 354
            ++  T       ++T +     +   KL  +    +   Y    +              
Sbjct: 423 ISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481

Query: 355 NQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGY-- 412
           N+     S   L  L  ++L               L  L +++++ N             
Sbjct: 482 NEEL---SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538

Query: 413 ---SPLKQCVNLETINLSYNRISSL-FDDWISSMTSLKELDLRHNNFSFIPD--QLDSIV 466
                      ++   + YN +        +  M  L  LD  HN    +        + 
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLT 598

Query: 467 SNKLTLDLSFNQI 479
                L L +NQI
Sbjct: 599 ----DLKLDYNQI 607

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.0 bits (192), Expect = 5e-15
 Identities = 35/226 (15%), Positives = 70/226 (30%), Gaps = 22/226 (9%)

Query: 60  LPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNK------E 113
                  S+         +T+  S +   +       F     +  I+LS+N        
Sbjct: 659 EGRNISCSM-DDYKGINASTVTLSYN--EIQKFPTELFATGSPISTIILSNNLMTSIPEN 715

Query: 114 ITGLHKDIFKGTPQLESLNLRGNSITEL-YSGVFQYVPKLQVLDLGSNDVAYMDPEIFKN 172
                   +K T  L +++LR N +T L        +P L  +D+  N  +    +   N
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL-N 774

Query: 173 LTSLRILNLDHNQLI---NLTRAI---FNNVPNLRSLDISGNNISILPSGVFSDLRKLQT 226
            + L+   + H +      + R         P+L  L I  N+I  +   +   L  L  
Sbjct: 775 SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYIL-- 832

Query: 227 FYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP 272
                N        + +   Y++        D  +++       + 
Sbjct: 833 -DIADNPNISID--VTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.8 bits (176), Expect = 4e-13
 Identities = 31/185 (16%), Positives = 61/185 (32%), Gaps = 8/185 (4%)

Query: 311 SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLN 370
             P     +  ++  L L     K    +    L EL  L+   +       L G   L 
Sbjct: 313 DQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELT 372

Query: 371 ---SLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLE--TIN 425
              S +           +  D    LN  DL  + +     +         ++L+   I 
Sbjct: 373 PDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN-RNPEMKPIKKDSRISLKDTQIG 431

Query: 426 LSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQ-IAIVDL 484
              NRI+ +    I  +T L+ +   ++ F++    +D   +N        N+ ++  +L
Sbjct: 432 NLTNRITFI-SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL 490

Query: 485 RTLEI 489
           + L  
Sbjct: 491 KDLTD 495

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  179 bits (457), Expect = 4e-49
 Identities = 73/386 (18%), Positives = 149/386 (38%), Gaps = 34/386 (8%)

Query: 125 TPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHN 184
           T  ++SL+L  N IT +  G  +    LQVL L S+ +  ++ + F +L SL  L+L  N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 185 QLINLTRAIFNNVPNLRSLDISGNNISILP-SGVFSDLRKLQTFY-ANSNRFQMFPKDLF 242
            L +L+ + F  + +L+ L++ GN    L  + +F +L  LQT    N   F    +  F
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 243 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIV 302
           A +  L  ++I     SL+   S    ++  ++ + L  S  A L        +++  + 
Sbjct: 145 AGLTSLNELEIKA--LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202

Query: 303 LTGHKKLTSLPSTLFRDCKKLVKLELQRNK------------------LKYLPENLFESL 344
           L     L     +     +    ++    +                  +  L E  F+  
Sbjct: 203 LR-DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

Query: 345 KELYTLNLKNNQLENITSL--VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNL 402
                 +   ++ + ++ L  V    +  L +    L       +  L  +  + + ++ 
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321

Query: 403 LTFDEYQYGYSPLKQCVNLETINLSYNRISSLF---DDWISSMTSLKELDLRHNNFSFIP 459
           +         S  +   +LE ++LS N +   +        +  SL+ L L  N+   + 
Sbjct: 322 VF----LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 460 DQLDSIVSNK--LTLDLSFNQIAIVD 483
              + +++ K   +LD+S N    + 
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFHPMP 403

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  178 bits (453), Expect = 2e-48
 Identities = 72/445 (16%), Positives = 151/445 (33%), Gaps = 44/445 (9%)

Query: 91  VLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVP 150
           +     F  L  ++ + + + +  + + +  F G   L  L ++  S+    S   + + 
Sbjct: 113 LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172

Query: 151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
            +  L L  ++ A++       L+S+R L L    L     +          +       
Sbjct: 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232

Query: 211 SILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
           S+L    F++L KL  +    +  +      F +     +   +  +  +  +       
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVE------FDDCTLNGLGDFNPSESDV--VSELGKVE 284

Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 330
              +  + + +  +    S ++     +  I +  + K+  +P +  +  K L  L+L  
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE-NSKVFLVPCSFSQHLKSLEFLDLSE 343

Query: 331 NKLKYLP---ENLFESLKELYTLNLKNNQLENITSLVG----LSGLNSLDLSWNQLEQIN 383
           N +            +   L TL L  N L ++         L  L SLD+S N    + 
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP 403

Query: 384 LIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMT 443
             +      +  ++LS   +                 LE +++S N + S        + 
Sbjct: 404 D-SCQWPEKMRFLNLSSTGIRVV-------KTCIPQTLEVLDVSNNNLDSFS----LFLP 451

Query: 444 SLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMV 503
            L+EL +  N    +PD   S+    L + +S NQ+  V     +               
Sbjct: 452 RLQELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFDR-------------- 495

Query: 504 ARSANIVILNDNPIACNCSNYDLIR 528
             S   + L+ NP  C+C   D + 
Sbjct: 496 LTSLQKIWLHTNPWDCSCPRIDYLS 520

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  152 bits (386), Expect = 1e-39
 Identities = 53/348 (15%), Positives = 122/348 (35%), Gaps = 24/348 (6%)

Query: 150 PKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN 209
               V D  S     +   +     +++ L+L  N++  +         NL+ L +  + 
Sbjct: 5   DASGVCDGRSRSFTSIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 210 ISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELP-SGLF 268
           I+ +    F  L  L+    + N         F  +  L+ + +  +    + L  + LF
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP--YQTLGVTSLF 119

Query: 269 ANLPLLNTVILGES-SIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 327
            NL  L T+ +G   + +E+    F   T++  + +     L +  S   +  + +  L 
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI-KALSLRNYQSQSLKSIRDIHHLT 178

Query: 328 LQRNKLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLI 385
           L  ++  +L E   + L  +  L L++  L     + L      + +     +   +   
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 386 AFDGLSSLNTVDLSHNLLTFDEYQYGY--------------SPLKQCVNLETINLSYNRI 431
           +F+ L  L    L  + + FD+                       + V +  +++    +
Sbjct: 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL 298

Query: 432 SSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
                   S +  +K + + ++    +P      + +   LDLS N +
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  112 bits (281), Expect = 5e-26
 Identities = 59/388 (15%), Positives = 128/388 (32%), Gaps = 45/388 (11%)

Query: 270 NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQ 329
           +            S   +PS L      + ++ L+   K+T +     R C  L  L L+
Sbjct: 3   SCDASGVCDGRSRSFTSIPSGLT---AAMKSLDLS-FNKITYIGHGDLRACANLQVLILK 58

Query: 330 RNKLKYLPENLFESLKELYTLNLKNNQLENITS--LVGLSGLNSLDLSWNQLEQINLIA- 386
            +++  +  + F SL  L  L+L +N L +++S     LS L  L+L  N  + + + + 
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 387 FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLK 446
           F  L++L T+ + +        +          +L  + +    + +     + S+  + 
Sbjct: 119 FPNLTNLQTLRIGNVETF---SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175

Query: 447 ELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARS 506
            L L  +  +F+ +    I+S+   L+L    +A      L +   +    + +      
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA------ 229

Query: 507 ANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPEN 566
               +L D            I  +S                 +E       G+    P  
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELS----------------EVEFDDCTLNGLGDFNPSE 273

Query: 567 LTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQ-LILHNNS 625
                           S    + +V      +     +  ++        ++ + + N+ 
Sbjct: 274 SD------------VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321

Query: 626 INHFLESPPESYKLITDLDLSYNNISHV 653
           +     S  +  K +  LDLS N +   
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEE 349

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 61.7 bits (150), Expect = 4e-10
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 7/124 (5%)

Query: 364 VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLET 423
           +        D        I        +++ ++DLS N +T      G+  L+ C NL+ 
Sbjct: 2   LSCDASGVCDGRSRSFTSIP---SGLTAAMKSLDLSFNKIT----YIGHGDLRACANLQV 54

Query: 424 INLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVD 483
           + L  +RI+++  D   S+ SL+ LDL  N+ S +       +S+   L+L  N    + 
Sbjct: 55  LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114

Query: 484 LRTL 487
           + +L
Sbjct: 115 VTSL 118

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  170 bits (434), Expect = 8e-48
 Identities = 65/288 (22%), Positives = 112/288 (38%), Gaps = 23/288 (7%)

Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
           P    L+L+ N I+EL    F+ +  L  L L +N ++ +  + F  L  L+ L +  N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ--MFPKDLFA 243
           L+ +   +     +L  L I  N I  +P GVFS LR +       N  +   F    F 
Sbjct: 114 LVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 244 EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVL 303
            +K L  ++IS  K  L  +P  L   L  L+   L  + I  +  +     + +  + L
Sbjct: 171 GLK-LNYLRISEAK--LTGIPKDLPETLNELH---LDHNKIQAIELEDLLRYSKLYRLGL 224

Query: 304 TGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS- 362
            GH ++  + +        L +L L  NKL  +P      LK L  + L  N +  +   
Sbjct: 225 -GHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVN 282

Query: 363 -------LVGLSGLNSLDLSWNQLEQINL--IAFDGLSSLNTVDLSHN 401
                   V  +  N + L  N +    +    F  ++    +   + 
Sbjct: 283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  151 bits (384), Expect = 5e-41
 Identities = 71/362 (19%), Positives = 135/362 (37%), Gaps = 74/362 (20%)

Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
            L  +      +  +   +    P   +LDL +ND++ +  + FK L  L  L L +N++
Sbjct: 34  HLRVVQCSDLGLKAVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 187 INLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
             +    F+ +  L+ L IS N++  +P  + S L +L     + NR +  PK +F+ ++
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVEL---RIHDNRIRKVPKGVFSGLR 147

Query: 247 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGH 306
            +  I++  +         G F  L                                   
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGL----------------------------------- 172

Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT--SLV 364
                          KL  L +   KL  +P++L E+L EL+   L +N+++ I    L+
Sbjct: 173 ---------------KLNYLRISEAKLTGIPKDLPETLNELH---LDHNKIQAIELEDLL 214

Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI 424
             S L  L L  NQ+  I   +   L +L  + L +N L+      G   LK    L+ +
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS--RVPAGLPDLK---LLQVV 269

Query: 425 NLSYNRISSLFDDWISSM------TSLKELDLRHNNFSF--IPDQLDSIVSNKLTLDLSF 476
            L  N I+ +  +    +           + L +N   +  +       V+++L +    
Sbjct: 270 YLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329

Query: 477 NQ 478
            +
Sbjct: 330 YK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  134 bits (339), Expect = 6e-35
 Identities = 47/297 (15%), Positives = 101/297 (34%), Gaps = 43/297 (14%)

Query: 73  NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
           +I+ +    F               +  +    F  L  ++ + +S N  +  +  ++  
Sbjct: 65  DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLPS 123

Query: 124 GTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSN--DVAYMDPEIFKNLTSLRILNL 181
               L  L +  N I ++  GVF  +  +  +++G N  + +  +P  F  L  L  L +
Sbjct: 124 S---LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179

Query: 182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDL 241
              +L  + + +      L  L +  N I  +         KL       N+ +M     
Sbjct: 180 SEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236

Query: 242 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 301
            + +  L+ + +  +K  L  +P+G   +L LL  V L  ++I ++  + F         
Sbjct: 237 LSFLPTLRELHLDNNK--LSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDF--------- 284

Query: 302 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY--LPENLFESLKELYTLNLKNNQ 356
                      P            + L  N + Y  +    F  + +   +   N +
Sbjct: 285 ----------CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  129 bits (327), Expect = 3e-33
 Identities = 68/334 (20%), Positives = 116/334 (34%), Gaps = 90/334 (26%)

Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS 211
           L+V+      +  +  EI  + T L   +L +N +  L +  F  + +L +L +  N IS
Sbjct: 35  LRVVQCSDLGLKAVPKEISPDTTLL---DLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 212 ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANL 271
            +    FS LRKLQ  Y + N                           L E+P  L ++L
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNH--------------------------LVEIPPNLPSSL 125

Query: 272 PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN 331
             L                +  N             ++  +P  +F   + +  +E+  N
Sbjct: 126 VEL---------------RIHDN-------------RIRKVPKGVFSGLRNMNCIEMGGN 157

Query: 332 KLK--YLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDG 389
            L+        F+ LK L  L +   +L  I   +    LN L L  N+++ I L     
Sbjct: 158 PLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDL-PETLNELHLDHNKIQAIELEDLLR 215

Query: 390 LSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELD 449
            S                             L  + L +N+I  + +  +S + +L+EL 
Sbjct: 216 YS----------------------------KLYRLGLGHNQIRMIENGSLSFLPTLRELH 247

Query: 450 LRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVD 483
           L +N  S +P  L  +      + L  N I  V 
Sbjct: 248 LDNNKLSRVPAGLPDL-KLLQVVYLHTNNITKVG 280

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 13/84 (15%)

Query: 571 TKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFL 630
           +  CP  C+C+         V CS   L  +P  +          +  L L NN I+   
Sbjct: 24  SAMCPFGCHCHLR------VVQCSDLGLKAVPKEIS-------PDTTLLDLQNNDISELR 70

Query: 631 ESPPESYKLITDLDLSYNNISHVD 654
           +   +  + +  L L  N IS + 
Sbjct: 71  KDDFKGLQHLYALVLVNNKISKIH 94

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  169 bits (431), Expect = 2e-46
 Identities = 64/295 (21%), Positives = 105/295 (35%), Gaps = 59/295 (20%)

Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEI 169
             + ++ + + I         LNL  N+I  + +  F+++  L+VL LG N +  ++   
Sbjct: 62  TRRGLSEVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA 118

Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFY- 228
           F  L SL  L L  N L  +    F  +  LR L +  N I  +PS  F+ +  L     
Sbjct: 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178

Query: 229 ANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP 288
               +                          L+ +  G F  L  L  + LG  +I ++P
Sbjct: 179 GELKK--------------------------LEYISEGAFEGLFNLKYLNLGMCNIKDMP 212

Query: 289 SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 348
           +                                 L +LE+  N    +    F  L  L 
Sbjct: 213 N---------------------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 349 TLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
            L + N+Q+  I   +  GL+ L  L+L+ N L  +    F  L  L  + L HN
Sbjct: 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  161 bits (409), Expect = 3e-43
 Identities = 71/259 (27%), Positives = 127/259 (49%), Gaps = 11/259 (4%)

Query: 198 PNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHK 257
                +  +   +S +P G+ S+ R L       N  QM   D F  + +L+V+++  + 
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIPSNTRYL---NLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 258 DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 317
             ++++  G F  L  LNT+ L ++ +  +PS  F   + +  + L  +  + S+PS  F
Sbjct: 111 --IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL-RNNPIESIPSYAF 167

Query: 318 RDCKKLVKLELQR-NKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSW 376
                L++L+L    KL+Y+ E  FE L  L  LNL    ++++ +L  L GL  L++S 
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSG 227

Query: 377 NQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD 436
           N   +I   +F GLSSL  + + ++ ++  E            +L  +NL++N +SSL  
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN----AFDGLASLVELNLAHNNLSSLPH 283

Query: 437 DWISSMTSLKELDLRHNNF 455
           D  + +  L EL L HN +
Sbjct: 284 DLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  149 bits (379), Expect = 3e-39
 Identities = 73/318 (22%), Positives = 126/318 (39%), Gaps = 37/318 (11%)

Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
            L E+P G+ +N   LN   L E++I  + +D F +  ++  + L G   +  +    F 
Sbjct: 65  GLSEVPQGIPSNTRYLN---LMENNIQMIQADTFRHLHHLEVLQL-GRNSIRQIEVGAFN 120

Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS--LVGLSGLNSLDLS- 375
               L  LEL  N L  +P   FE L +L  L L+NN +E+I S     +  L  LDL  
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180

Query: 376 WNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLF 435
             +LE I+  AF+GL +L  ++L    +           L   V LE + +S N    + 
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN------LTPLVGLEELEMSGNHFPEIR 234

Query: 436 DDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQD 495
                 ++SLK+L + ++  S I       +++ + L+L+ N      L +L        
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-----LSSLPHDLFTPL 289

Query: 496 PNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFG-- 553
                         + L+ NP  C+C     I +++  + + +            C    
Sbjct: 290 RY---------LVELHLHHNPWNCDCD----ILWLAWWLREYIPTNST---CCGRCHAPM 333

Query: 554 -NAGVGINSVRPENLTCD 570
              G  +  V   +  C 
Sbjct: 334 HMRGRYLVEVDQASFQCS 351

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  147 bits (372), Expect = 3e-38
 Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 6/215 (2%)

Query: 92  LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
           +    F  LH ++ + L  N  I  +    F G   L +L L  N +T + SG F+Y+ K
Sbjct: 90  IQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148

Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH-NQLINLTRAIFNNVPNLRSLDISGNNI 210
           L+ L L +N +  +    F  + SL  L+L    +L  ++   F  + NL+ L++   NI
Sbjct: 149 LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208

Query: 211 SILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
             +P+   + L  L+    + N F       F  +  L+ + +   +  +  +    F  
Sbjct: 209 KDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ--VSLIERNAFDG 264

Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG 305
           L  L  + L  ++++ LP DLF     +  + L  
Sbjct: 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  121 bits (306), Expect = 1e-29
 Identities = 38/172 (22%), Positives = 80/172 (46%), Gaps = 11/172 (6%)

Query: 73  NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
            +T I + AF               +  +    F+ +  +  + L   K++  + +  F+
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 124 GTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH 183
           G   L+ LNL   +I ++ +     +  L+ L++  N    + P  F  L+SL+ L + +
Sbjct: 194 GLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251

Query: 184 NQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ 235
           +Q+  + R  F+ + +L  L+++ NN+S LP  +F+ LR L   + + N + 
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.5 bits (204), Expect = 7e-17
 Identities = 36/170 (21%), Positives = 65/170 (38%), Gaps = 34/170 (20%)

Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS--LVGLSGLNSLDLSWNQL 379
           +  K+   R  L  +P+ +  + + L    L  N ++ I +     L  L  L L  N +
Sbjct: 55  QFSKVVCTRRGLSEVPQGIPSNTRYLN---LMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 380 EQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWI 439
            QI + AF+GL+                            +L T+ L  N ++ +     
Sbjct: 112 RQIEVGAFNGLA----------------------------SLNTLELFDNWLTVIPSGAF 143

Query: 440 SSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLS-FNQIAIVDLRTLE 488
             ++ L+EL LR+N    IP    + V + + LDL    ++  +     E
Sbjct: 144 EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 11/84 (13%)

Query: 571 TKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFL 630
            + CP+ C C+         V C+   L+ +P  +P       + +  L L  N+I    
Sbjct: 43  PQNCPSVCSCSNQF----SKVVCTRRGLSEVPQGIP-------SNTRYLNLMENNIQMIQ 91

Query: 631 ESPPESYKLITDLDLSYNNISHVD 654
                    +  L L  N+I  ++
Sbjct: 92  ADTFRHLHHLEVLQLGRNSIRQIE 115

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  165 bits (420), Expect = 9e-46
 Identities = 67/302 (22%), Positives = 121/302 (40%), Gaps = 39/302 (12%)

Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEI 169
            +  +  +   + +     +SL+L  N IT + +   Q    LQ L L SN +  ++ + 
Sbjct: 39  SSGSLNSIPSGLTEAV---KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95

Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI-SILPSGVFSDLRKLQTFY 228
           F +L SL  L+L +N L NL+ + F  + +L  L++ GN   ++  + +FS L KLQ   
Sbjct: 96  FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155

Query: 229 ANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP 288
             +                           +  ++    FA L  L  + +  S +    
Sbjct: 156 VGNMD-------------------------TFTKIQRKDFAGLTFLEELEIDASDLQSYE 190

Query: 289 SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY-----LPENLFES 343
                +  N+++++L   K+   L          +  LEL+   L       L      S
Sbjct: 191 PKSLKSIQNVSHLIL-HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249

Query: 344 LKELYTLNLKNNQLENITSLV----GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLS 399
           L + +T        E++  ++     +SGL  L+ S NQL+ +    FD L+SL  + L 
Sbjct: 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309

Query: 400 HN 401
            N
Sbjct: 310 TN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  142 bits (359), Expect = 2e-37
 Identities = 49/269 (18%), Positives = 101/269 (37%), Gaps = 29/269 (10%)

Query: 92  LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
           +S         ++ ++L+ N  I  + +D F     LE L+L  N ++ L S  F+ +  
Sbjct: 67  ISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125

Query: 152 LQVLDLGSNDVAYMDPE-IFKNLTSLRILNLDHN-QLINLTRAIFNNVPNLRSLDISGNN 209
           L  L+L  N    +    +F +LT L+IL + +      + R  F  +  L  L+I  ++
Sbjct: 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185

Query: 210 ISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISY---HKDSLKELPSG 266
           +          ++ +     +  +  +  +        ++ +++           EL +G
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245

Query: 267 LFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL 326
                                  +         N+ +T  + L  +   L      L++L
Sbjct: 246 ET---------------------NSLIKKFTFRNVKIT-DESLFQVMK-LLNQISGLLEL 282

Query: 327 ELQRNKLKYLPENLFESLKELYTLNLKNN 355
           E  RN+LK +P+ +F+ L  L  + L  N
Sbjct: 283 EFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  113 bits (285), Expect = 1e-27
 Identities = 43/221 (19%), Positives = 83/221 (37%), Gaps = 10/221 (4%)

Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 330
                       S+  +PS L      + ++ L  + ++T + ++  + C  L  L L  
Sbjct: 30  CDRNGICKGSSGSLNSIPSGLT---EAVKSLDL-SNNRITYISNSDLQRCVNLQALVLTS 85

Query: 331 NKLKYLPENLFESLKELYTLNLKNNQLENITS--LVGLSGLNSLDLSWNQLEQIN-LIAF 387
           N +  + E+ F SL  L  L+L  N L N++S     LS L  L+L  N  + +     F
Sbjct: 86  NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145

Query: 388 DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKE 447
             L+ L  + + +    F + Q           LE + +  + + S     + S+ ++  
Sbjct: 146 SHLTKLQILRVGNMDT-FTKIQRK--DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202

Query: 448 LDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLE 488
           L L       + +    + S+   L+L    +       L 
Sbjct: 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 93.3 bits (232), Expect = 1e-20
 Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 10/152 (6%)

Query: 92  LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
           +    F GL F++ + +  +  +        K    +  L L       L          
Sbjct: 165 IQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223

Query: 152 LQVLDLGSNDVAYM--------DPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSL 203
           ++ L+L   D+           +        + R + +    L  + +   N +  L  L
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL-LNQISGLLEL 282

Query: 204 DISGNNISILPSGVFSDLRKLQTFYANSNRFQ 235
           + S N +  +P G+F  L  LQ  + ++N + 
Sbjct: 283 EFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 78.6 bits (194), Expect = 7e-16
 Identities = 43/228 (18%), Positives = 75/228 (32%), Gaps = 57/228 (25%)

Query: 291 LFWNSTNITNIVLTGHKKLTSL--PSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 348
           + W    I ++         SL                      L  +P  L E++K L 
Sbjct: 7   MVWVLGVIISLSKEESSNQASLSCDRNGICKG--------SSGSLNSIPSGLTEAVKSLD 58

Query: 349 TLNLKNNQLENITS--LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT-- 404
              L NN++  I++  L     L +L L+ N +  I   +F  L SL  +DLS+N L+  
Sbjct: 59  ---LSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115

Query: 405 ----FDEYQYGYSPLKQCVNLETINLSYNRISSLFD------------------------ 436
               F              +L  +NL  N   +L +                        
Sbjct: 116 SSSWFK----------PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 437 --DWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIV 482
                + +T L+EL++  ++      +    + N   L L   Q  ++
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  167 bits (424), Expect = 2e-45
 Identities = 60/295 (20%), Positives = 100/295 (33%), Gaps = 59/295 (20%)

Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEI 169
             K +  +   I         LNL  N I  +    F+++  L++L L  N +  ++   
Sbjct: 51  VRKNLREVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA 107

Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFY- 228
           F  L +L  L L  N+L  +    F  +  L+ L +  N I  +PS  F+ +  L+    
Sbjct: 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167

Query: 229 ANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP 288
               R                          L  +  G F  L  L  + L   ++ E+P
Sbjct: 168 GELKR--------------------------LSYISEGAFEGLSNLRYLNLAMCNLREIP 201

Query: 289 SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 348
           +                                KL +L+L  N L  +    F+ L  L 
Sbjct: 202 N---------------------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 349 TLNLKNNQLENITS--LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
            L +  +Q++ I       L  L  ++L+ N L  +    F  L  L  + L HN
Sbjct: 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  157 bits (400), Expect = 3e-42
 Identities = 66/259 (25%), Positives = 124/259 (47%), Gaps = 11/259 (4%)

Query: 198 PNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHK 257
                +     N+  +P G+ ++ R L     + N+ Q+   + F  +++L+++++S + 
Sbjct: 43  NQFSKVICVRKNLREVPDGISTNTRLL---NLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 258 DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 317
             ++ +  G F  L  LNT+ L ++ +  +P+  F   + +  + L  +  + S+PS  F
Sbjct: 100 --IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL-RNNPIESIPSYAF 156

Query: 318 RDCKKLVKLELQR-NKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSW 376
                L +L+L    +L Y+ E  FE L  L  LNL    L  I +L  L  L+ LDLS 
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSG 216

Query: 377 NQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD 436
           N L  I   +F GL  L  + +  + +   E +  +  L+   +L  INL++N ++ L  
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE-RNAFDNLQ---SLVEINLAHNNLTLLPH 272

Query: 437 DWISSMTSLKELDLRHNNF 455
           D  + +  L+ + L HN +
Sbjct: 273 DLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  149 bits (379), Expect = 3e-39
 Identities = 70/318 (22%), Positives = 123/318 (38%), Gaps = 37/318 (11%)

Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
           +L+E+P G+  N  LLN   L E+ I  +  + F +  ++  + L     + ++    F 
Sbjct: 54  NLREVPDGISTNTRLLN---LHENQIQIIKVNSFKHLRHLEILQL-SRNHIRTIEIGAFN 109

Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS--LVGLSGLNSLDLS- 375
               L  LEL  N+L  +P   F  L +L  L L+NN +E+I S     +  L  LDL  
Sbjct: 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169

Query: 376 WNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLF 435
             +L  I+  AF+GLS+L  ++L+   L           L   + L+ ++LS N +S++ 
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN------LTPLIKLDELDLSGNHLSAIR 223

Query: 436 DDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQD 495
                 +  L++L +  +    I       + + + ++L+ N      L  L        
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-----LTLLPHDLFTPL 278

Query: 496 PNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFG-- 553
            + +          + L+ NP  CNC    L  ++                    C    
Sbjct: 279 HHLER---------IHLHHNPWNCNCDILWLSWWIKDM-------APSNTACCARCNTPP 322

Query: 554 -NAGVGINSVRPENLTCD 570
              G  I  +     TC 
Sbjct: 323 NLKGRYIGELDQNYFTCY 340

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  147 bits (374), Expect = 1e-38
 Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 6/215 (2%)

Query: 92  LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
           +    F  L  ++ + LS N  I  +    F G   L +L L  N +T + +G F Y+ K
Sbjct: 79  IKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137

Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH-NQLINLTRAIFNNVPNLRSLDISGNNI 210
           L+ L L +N +  +    F  + SLR L+L    +L  ++   F  + NLR L+++  N+
Sbjct: 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197

Query: 211 SILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
             +P+   + L KL     + N         F  + +LQ + +   +  ++ +    F N
Sbjct: 198 REIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ--IQVIERNAFDN 253

Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG 305
           L  L  + L  +++  LP DLF    ++  I L  
Sbjct: 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  120 bits (302), Expect = 3e-29
 Identities = 39/172 (22%), Positives = 81/172 (47%), Gaps = 11/172 (6%)

Query: 73  NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
            +TTI   AF               +  +    F+ +  ++ + L   K ++ + +  F+
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 124 GTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH 183
           G   L  LNL   ++ E+       + KL  LDL  N ++ + P  F+ L  L+ L +  
Sbjct: 183 GLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240

Query: 184 NQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ 235
           +Q+  + R  F+N+ +L  ++++ NN+++LP  +F+ L  L+  + + N + 
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 34/166 (20%)

Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQIN 383
           +   R  L+ +P+ +  + + L    L  NQ++ I   S   L  L  L LS N +  I 
Sbjct: 48  VICVRKNLREVPDGISTNTRLLN---LHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE 104

Query: 384 LIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMT 443
           + AF+GL+                            NL T+ L  NR++++ +     ++
Sbjct: 105 IGAFNGLA----------------------------NLNTLELFDNRLTTIPNGAFVYLS 136

Query: 444 SLKELDLRHNNFSFIPDQLDSIVSNKLTLDLS-FNQIAIVDLRTLE 488
            LKEL LR+N    IP    + + +   LDL    +++ +     E
Sbjct: 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 11/84 (13%)

Query: 571 TKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFL 630
            + CP+ C C+         V C   +L  +PD +          +  L LH N I    
Sbjct: 32  AQTCPSVCSCSNQFS----KVICVRKNLREVPDGIS-------TNTRLLNLHENQIQIIK 80

Query: 631 ESPPESYKLITDLDLSYNNISHVD 654
            +  +  + +  L LS N+I  ++
Sbjct: 81  VNSFKHLRHLEILQLSRNHIRTIE 104

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  166 bits (422), Expect = 8e-45
 Identities = 65/387 (16%), Positives = 133/387 (34%), Gaps = 41/387 (10%)

Query: 119 KDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI 178
            +I +   + +   +  +S+ +  + + Q    ++ LDL  N ++ +        T L +
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 179 LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP 238
           LNL  N L         ++  LR+LD++ N +  L          ++T +A +N      
Sbjct: 63  LNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVS 115

Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP-SDLFWNSTN 297
                  K + +       + +  L          +  + L  + I  +  ++L  +S  
Sbjct: 116 CSRGQGKKNIYL-----ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 298 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 357
           + ++ L  +  +  +   +     KL  L+L  NKL ++    F+S   +  ++L+NN+L
Sbjct: 171 LEHLNL-QYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKL 226

Query: 358 ENI-TSLVGLSGLNSLDLSWNQLEQINL-IAFDGLSSLNTVDLSHN-------------- 401
             I  +L     L   DL  N      L   F     + TV                   
Sbjct: 227 VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 402 -LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMT-------SLKELDLRHN 453
            L  +  Y     P      L  +    + + S        +          +E+D    
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE 346

Query: 454 NFSFIPDQLDSIVSNKLTLDLSFNQIA 480
            +  + DQ+      K+TL+     + 
Sbjct: 347 QYRTVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  129 bits (325), Expect = 6e-32
 Identities = 49/418 (11%), Positives = 121/418 (28%), Gaps = 32/418 (7%)

Query: 92  LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
           +S         ++ + LS N  +        +    L +L+L  N + EL  G     P 
Sbjct: 49  ISAADLAPFTKLELLNLSSNV-LYETLD--LESLSTLRTLDLNNNYVQELLVG-----PS 100

Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS 211
           ++ L   +N+++ +     +   ++    L +N++  L          ++ LD+  N I 
Sbjct: 101 IETLHAANNNISRVSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

Query: 212 ILPSG-VFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
            +    + +    L+      N        +      L+ + +S +K  L  +    F +
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNK--LAFMGPE-FQS 212

Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 330
              +  + L  + +  +       S N+ +  L G+          F   +++    + +
Sbjct: 213 AAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV--QTVAK 269

Query: 331 NKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGL 390
             +K L     E        +      E++ +      L +L    + L        + L
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF-ADRLIALKRKEHALLSGQGSETERL 328

Query: 391 S-------SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMT 443
                       +D           Q       +     T+      +     +   +  
Sbjct: 329 ECERENQARQREIDALKEQYRTVIDQV----TLRKQAKITLEQKKKALDEQVSNGRRAHA 384

Query: 444 SLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDST 501
            L     +      +    +     +L   +      +   +      A +D +    
Sbjct: 385 ELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQH 442

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  115 bits (290), Expect = 2e-27
 Identities = 54/466 (11%), Positives = 127/466 (27%), Gaps = 96/466 (20%)

Query: 193 IFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIK 252
           I  N    +   ++ +++    + +      ++    + N          A    L+++ 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 253 ISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSL 312
           +S +   L E       +L  L T+ L  + + EL                         
Sbjct: 65  LSSNV--LYETLD--LESLSTLRTLDLNNNYVQELLV----------------------- 97

Query: 313 PSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLN 370
                     +  L    N +  +  +  +  K +Y   L NN++  +  L     S + 
Sbjct: 98  -------GPSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQ 147

Query: 371 SLDLSWNQLEQINLIAFDG-LSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYN 429
            LDL  N+++ +N         +L  ++L +N +                 L+T++LS N
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY------DVKGQVVFAKLKTLDLSSN 201

Query: 430 RISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEI 489
           +++ +      S   +  + LR+N    I   L    +                L   + 
Sbjct: 202 KLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQN----------------LEHFD- 243

Query: 490 KAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNL 549
                                 L  N   C        +   +++     Q ++ +T   
Sbjct: 244 ----------------------LRGNGFHCGTLRDFFSKN--QRVQTVAKQTVKKLTGQN 279

Query: 550 ECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTY 609
           E                  C+  P P               ++   +    +        
Sbjct: 280 EEECT---VPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECER---- 332

Query: 610 EDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNISHVDT 655
            + +A   ++          ++      +    L+     +    +
Sbjct: 333 -ENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVS 377

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  114 bits (286), Expect = 5e-27
 Identities = 42/196 (21%), Positives = 80/196 (40%), Gaps = 14/196 (7%)

Query: 289 SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 348
            ++  N        +T    L    ++L +    + +L+L  N L  +         +L 
Sbjct: 3   HEIKQNGNRYKIEKVT-DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 349 TLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEY 408
            LNL +N L     L  LS L +LDL+ N ++++         S+ T+  ++N ++    
Sbjct: 62  LLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNIS---- 112

Query: 409 QYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSN 468
                   +    + I L+ N+I+ L D      + ++ LDL+ N    +     +  S+
Sbjct: 113 ---RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 469 KLT-LDLSFNQIAIVD 483
            L  L+L +N I  V 
Sbjct: 170 TLEHLNLQYNFIYDVK 185

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  159 bits (403), Expect = 7e-44
 Identities = 58/282 (20%), Positives = 99/282 (35%), Gaps = 57/282 (20%)

Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD--PEIFKNLTSLRILNLDH 183
                L L  N +  L  GVF  + +L  L L SN +++     +     TSL+ L+L  
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 184 NQLINLTRAIFNNVPNLRSLDISGNNISILPS-GVFSDLRKLQTFYANSNRFQMFPKDLF 242
           N +I ++   F  +  L  LD   +N+  +    VF  LR L     +            
Sbjct: 88  NGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH--------- 137

Query: 243 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIV 302
                             +   +G+F  L  L                          + 
Sbjct: 138 -----------------TRVAFNGIFNGLSSLEV------------------------LK 156

Query: 303 LTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS 362
           + G+    +    +F + + L  L+L + +L+ L    F SL  L  LN+ +N   ++ +
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216

Query: 363 --LVGLSGLNSLDLSWNQLEQINLIAFDGL-SSLNTVDLSHN 401
                L+ L  LD S N +            SSL  ++L+ N
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  138 bits (351), Expect = 8e-37
 Identities = 61/263 (23%), Positives = 111/263 (42%), Gaps = 14/263 (5%)

Query: 199 NLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKD 258
           +   +  +   ++ +P+G+ S   +L      SN+ Q  P  +F ++  L  + +S +  
Sbjct: 8   SGTEIRCNSKGLTSVPTGIPSSATRL---ELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST-LF 317
           S K   S        L  + L  + +  + S+ F     + ++    H  L  +    +F
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDF-QHSNLKQMSEFSVF 122

Query: 318 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ-LENITS--LVGLSGLNSLDL 374
              + L+ L++     +     +F  L  L  L +  N   EN        L  L  LDL
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

Query: 375 SWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL 434
           S  QLEQ++  AF+ LSSL  +++SHN     +      P K   +L+ ++ S N I + 
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD----TFPYKCLNSLQVLDYSLNHIMTS 238

Query: 435 FDDWISSM-TSLKELDLRHNNFS 456
               +    +SL  L+L  N+F+
Sbjct: 239 KKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  134 bits (340), Expect = 3e-35
 Identities = 68/320 (21%), Positives = 127/320 (39%), Gaps = 40/320 (12%)

Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG-HKKLTSLPSTLF 317
            L  +P+G+ ++   L    L  + +  LP  +F   T +T + L+          S   
Sbjct: 18  GLTSVPTGIPSSATRLE---LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74

Query: 318 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS---LVGLSGLNSLDL 374
                L  L+L  N +  +  N F  L++L  L+ +++ L+ ++     + L  L  LD+
Sbjct: 75  FGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 133

Query: 375 SWNQLEQINLIAFDGLSSLNTVDLSHN--LLTFDEYQYGYSPLKQCVNLETINLSYNRIS 432
           S           F+GLSSL  + ++ N     F           +  NL  ++LS  ++ 
Sbjct: 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-----DIFTELRNLTFLDLSQCQLE 188

Query: 433 SLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAA 492
            L     +S++SL+ L++ HNNF  +       +++   LD S N I     + L+    
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ---- 244

Query: 493 AQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECF 552
                        S   + L  N  AC C +   ++++  +    V        + +EC 
Sbjct: 245 ---------HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE------VERMECA 289

Query: 553 G---NAGVGINSVRPENLTC 569
                 G+ + S+   N+TC
Sbjct: 290 TPSDKQGMPVLSL---NITC 306

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  128 bits (325), Expect = 3e-33
 Identities = 52/270 (19%), Positives = 92/270 (34%), Gaps = 56/270 (20%)

Query: 92  LSPPYFDGLHFVKHILLSHNK-EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVP 150
           L    FD L  +  + LS N     G       GT  L+ L+L  N +  + S  F  + 
Sbjct: 43  LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLE 101

Query: 151 KLQVLDLGSNDVAYM-DPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN 209
           +L+ LD   +++  M +  +F +L +L  L++ H         IFN + +L  L ++GN+
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161

Query: 210 -ISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLF 268
                   +F++LR L     +  +                          L++L    F
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQ--------------------------LEQLSPTAF 195

Query: 269 ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL 328
            +L  L  + +                          H    SL +  ++    L  L+ 
Sbjct: 196 NSLSSLQVLNM-------------------------SHNNFFSLDTFPYKCLNSLQVLDY 230

Query: 329 QRNKLKYLPENLFESL-KELYTLNLKNNQL 357
             N +    +   +     L  LNL  N  
Sbjct: 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  113 bits (285), Expect = 7e-28
 Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 3/147 (2%)

Query: 91  VLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNS-ITELYSGVFQYV 149
           +     F  L  + ++ +SH          IF G   LE L + GNS        +F  +
Sbjct: 116 MSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174

Query: 150 PKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN 209
             L  LDL    +  + P  F +L+SL++LN+ HN   +L    +  + +L+ LD S N+
Sbjct: 175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234

Query: 210 ISILPSGVFSDL-RKLQTFYANSNRFQ 235
           I              L       N F 
Sbjct: 235 IMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 25/113 (22%)

Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYE-----DKKATSIQ---------- 618
           CP+RC C+ +       + C+S  LT +P  +P +         K  S+           
Sbjct: 1   CPSRCSCSGT------EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQL 54

Query: 619 --LILHNNSINHFLESPPESYKL--ITDLDLSYNNISHVDTMYPYLNHLELID 667
             L L +N ++         +    +  LDLS+N +  + + +  L  LE +D
Sbjct: 55  TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  154 bits (391), Expect = 2e-42
 Identities = 59/249 (23%), Positives = 99/249 (39%), Gaps = 31/249 (12%)

Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEI 169
             + +  +   I   +   + + L GN I+ + +  F+    L +L L SN +A +D   
Sbjct: 19  PQQGLQAVPVGIPAAS---QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 170 FKNLTSLRILNLDHN-QLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFY 228
           F  L  L  L+L  N QL ++  A F+ +  L +L +    +  L  G+F  L  LQ  Y
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135

Query: 229 ANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP 288
              N                           L+ LP   F +L  L  + L  + I+ +P
Sbjct: 136 LQDNA--------------------------LQALPDDTFRDLGNLTHLFLHGNRISSVP 169

Query: 289 SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 348
              F    ++  ++L  + ++  +    FRD  +L+ L L  N L  LP      L+ L 
Sbjct: 170 ERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228

Query: 349 TLNLKNNQL 357
            L L +N  
Sbjct: 229 YLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  145 bits (367), Expect = 4e-39
 Identities = 43/191 (22%), Positives = 87/191 (45%), Gaps = 9/191 (4%)

Query: 73  NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
            I+ +   +F    +          +  +    F GL  ++ + LS N ++  +    F 
Sbjct: 43  RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102

Query: 124 GTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH 183
           G  +L +L+L    + EL  G+F+ +  LQ L L  N +  +  + F++L +L  L L  
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162

Query: 184 NQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFA 243
           N++ ++    F  + +L  L +  N ++ +    F DL +L T Y  +N     P +  A
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222

Query: 244 EMKYLQVIKIS 254
            ++ LQ ++++
Sbjct: 223 PLRALQYLRLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  137 bits (346), Expect = 3e-36
 Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 230 NSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS 289
                Q  P  + A  + + +     H + +  +P+  F     L  + L  + +A + +
Sbjct: 19  PQQGLQAVPVGIPAASQRIFL-----HGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73

Query: 290 DLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYT 349
             F     +  + L+ + +L S+    F    +L  L L R  L+ L   LF  L  L  
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133

Query: 350 LNLKNNQLENITS--LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDE 407
           L L++N L+ +       L  L  L L  N++  +   AF GL SL+ + L  N +    
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193

Query: 408 YQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
                   +    L T+ L  N +S+L  + ++ + +L+ L L  N +
Sbjct: 194 ----PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  132 bits (333), Expect = 2e-34
 Identities = 67/301 (22%), Positives = 112/301 (37%), Gaps = 37/301 (12%)

Query: 275 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 334
            T    +  +  +P  +         I L G++ ++ +P+  FR C+ L  L L  N L 
Sbjct: 14  VTTSCPQQGLQAVPVGIP---AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLA 69

Query: 335 YLPENLFESLKELYTLNL-KNNQLENITS--LVGLSGLNSLDLSWNQLEQINLIAFDGLS 391
            +    F  L  L  L+L  N QL ++      GL  L++L L    L+++    F GL+
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 392 SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLR 451
           +L  + L  N L            +   NL  + L  NRISS+ +     + SL  L L 
Sbjct: 130 ALQYLYLQDNALQALPDD----TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185

Query: 452 HNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVI 511
            N  + +       +   +TL L  N ++ +    L                 R+   + 
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP--------------LRALQYLR 231

Query: 512 LNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFG---NAGVGINSVRPENLT 568
           LNDNP  C+C    L  ++ K             +  + C      AG  +  +   +L 
Sbjct: 232 LNDNPWVCDCRARPLWAWLQKF---------RGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282

Query: 569 C 569
            
Sbjct: 283 G 283

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  124 bits (313), Expect = 8e-32
 Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 11/170 (6%)

Query: 73  NITTINTLAFSNSPS----------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIF 122
            +  I+  AF+               +  + P  F GL  +  + L     +  L   +F
Sbjct: 67  VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLF 125

Query: 123 KGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD 182
           +G   L+ L L+ N++  L    F+ +  L  L L  N ++ +    F+ L SL  L L 
Sbjct: 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185

Query: 183 HNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN 232
            N++ ++    F ++  L +L +  NN+S LP+   + LR LQ    N N
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.3 bits (191), Expect = 8e-16
 Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 10/123 (8%)

Query: 73  NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
            +  +    F    +          +  L    F  L  + H+ L  N+ I+ + +  F+
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFR 174

Query: 124 GTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH 183
           G   L+ L L  N +  ++   F+ + +L  L L +N+++ +  E    L +L+ L L+ 
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

Query: 184 NQL 186
           N  
Sbjct: 235 NPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 573 PCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLES 632
           PCP  C C   P    ++ +C    L  +P  +P   +       ++ LH N I+H   +
Sbjct: 1   PCPGACVCYNEP---KVTTSCPQQGLQAVPVGIPAASQ-------RIFLHGNRISHVPAA 50

Query: 633 PPESYKLITDLDLSYNNISHVD 654
              + + +T L L  N ++ +D
Sbjct: 51  SFRACRNLTILWLHSNVLARID 72

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  152 bits (385), Expect = 3e-41
 Identities = 60/347 (17%), Positives = 117/347 (33%), Gaps = 71/347 (20%)

Query: 119 KDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI 178
            +I +   + +   +  +S+ +  + + Q    ++ LDL  N ++ +        T L +
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 179 LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP 238
           LNL  N L         ++  LR+LD++ N +  L          ++T +A +N      
Sbjct: 63  LNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNN----- 110

Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 298
                                +  +          +                L  N    
Sbjct: 111 ---------------------ISRVSCSRGQGKKNI---------------YLANN---- 130

Query: 299 TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN-LFESLKELYTLNLKNNQL 357
                    K+T L         ++  L+L+ N++  +    L  S   L  LNL+ N +
Sbjct: 131 ---------KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 358 ENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQ 417
            ++   V  + L +LDLS N+L  +    F   + +  + L +N L   E       L+ 
Sbjct: 182 YDVKGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIE-----KALRF 235

Query: 418 CVNLETINLSYNRISSL-FDDWISSMTSLKELDLRHNNFSFIPDQLD 463
             NLE  +L  N        D+ S    ++ +         +  Q +
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK--QTVKKLTGQNE 280

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  143 bits (362), Expect = 4e-38
 Identities = 56/308 (18%), Positives = 116/308 (37%), Gaps = 44/308 (14%)

Query: 97  FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
               +  K   ++ +  +      + +    ++ L+L GN ++++ +       KL++L+
Sbjct: 6   KQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSG 216
           L SN +        ++L++LR L+L++N +  L        P++ +L  + NNIS +   
Sbjct: 65  LSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS 117

Query: 217 VFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSG-LFANLPLLN 275
                + +   Y  +N+  M           +Q + +  ++  +  +    L A+   L 
Sbjct: 118 RGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLE 172

Query: 276 TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY 335
            + L  + I ++   +                              KL  L+L  NKL +
Sbjct: 173 HLNLQYNFIYDVKGQVV---------------------------FAKLKTLDLSSNKLAF 205

Query: 336 LPENLFESLKELYTLNLKNNQLENI-TSLVGLSGLNSLDLSWNQLEQINL-IAFDGLSSL 393
           +    F+S   +  ++L+NN+L  I  +L     L   DL  N      L   F     +
Sbjct: 206 MGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264

Query: 394 NTVDLSHN 401
            TV     
Sbjct: 265 QTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  121 bits (306), Expect = 1e-30
 Identities = 46/334 (13%), Positives = 97/334 (29%), Gaps = 86/334 (25%)

Query: 191 RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQV 250
             I  N    +   ++ +++    + +      ++    + N          A    L++
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 251 IKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT 310
           + +S +   L E       +L  L T+ L  + + EL                       
Sbjct: 63  LNLSSNV--LYETLD--LESLSTLRTLDLNNNYVQELLV--------------------- 97

Query: 311 SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GLSG 368
                       +  L    N +  +  +  +  K +Y   L NN++  +  L     S 
Sbjct: 98  ---------GPSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSR 145

Query: 369 LNSLDLSWNQLEQINLIAFDG-LSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLS 427
           +  LDL  N+++ +N         +L  ++L +N +                 L+T++LS
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY------DVKGQVVFAKLKTLDLS 199

Query: 428 YNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTL 487
            N+++ +      S   +  + LR+N    I   L    +                L   
Sbjct: 200 SNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQN----------------LEHF 242

Query: 488 EIKAAAQDPNEDSTMVARSANIVILNDNPIACNC 521
           +                       L  N   C  
Sbjct: 243 D-----------------------LRGNGFHCGT 253

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  152 bits (386), Expect = 4e-41
 Identities = 69/356 (19%), Positives = 151/356 (42%), Gaps = 34/356 (9%)

Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
            +     L+  S+T++ +   + +  +  L +    VA +     + LT+L  LNL+ NQ
Sbjct: 22  AEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQ 77

Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEM 245
           + +++    +N+  L +L I  N I+ + +    +L  L+  Y N +          A +
Sbjct: 78  ITDIS--PLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP--LANL 131

Query: 246 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG 305
             +  + +    +      S L +N+  LN + + ES + ++      N T++ ++ L  
Sbjct: 132 TKMYSLNLGA--NHNLSDLSPL-SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL-N 185

Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG 365
           + ++  +          L       N++  +      ++  L +L + NN++ +++ L  
Sbjct: 186 YNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLAN 241

Query: 366 LSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETIN 425
           LS L  L++  NQ+  IN  A   L+ L  +++  N ++        S L     L ++ 
Sbjct: 242 LSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQIS------DISVLNNLSQLNSLF 293

Query: 426 LSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP--DQLDSIVSNKLTLDLSFNQI 479
           L+ N++ +   + I  +T+L  L L  N+ + I     L  +     + D +   I
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMD----SADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  146 bits (372), Expect = 4e-39
 Identities = 78/346 (22%), Positives = 157/346 (45%), Gaps = 29/346 (8%)

Query: 87  SNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVF 146
               V      + L  +  ++++  K +  +     +    LE LNL GN IT++     
Sbjct: 30  QKASVTDVVTQEELESITKLVVAGEK-VASI--QGIEYLTNLEYLNLNGNQITDISP--L 84

Query: 147 QYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDIS 206
             + KL  L +G+N +   D    +NLT+LR L L+ + + +++     N+  + SL++ 
Sbjct: 85  SNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDIS--PLANLTKMYSLNLG 140

Query: 207 GNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSG 266
            N+     S   S++  L       ++ +       A +  L  + ++Y++  ++++   
Sbjct: 141 ANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ--IEDISP- 194

Query: 267 LFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL 326
             A+L  L+      + I ++      N T + ++ + G+ K+T L      +  +L  L
Sbjct: 195 -LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKI-GNNKITDLSP--LANLSQLTWL 248

Query: 327 ELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIA 386
           E+  N++  +     + L +L  LN+ +NQ+ +I+ L  LS LNSL L+ NQL   ++  
Sbjct: 249 EIGTNQISDINA--VKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEV 306

Query: 387 FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS 432
             GL++L T+ LS N +T         PL     +++ + +   I 
Sbjct: 307 IGGLTNLTTLFLSQNHIT------DIRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  139 bits (353), Expect = 1e-36
 Identities = 75/362 (20%), Positives = 149/362 (41%), Gaps = 58/362 (16%)

Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
             +L      I +++      + +     L    V   D    + L S+  L +   ++ 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVT--DVVTQEELESITKLVVAGEKVA 57

Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
           ++       + NL  L+++GN I+ +     S+L KL   Y  +N+              
Sbjct: 58  SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK-------------- 99

Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHK 307
                       + ++ +    NL  L  + L E +I+++      N T + ++ L G  
Sbjct: 100 ------------ITDISA--LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNL-GAN 142

Query: 308 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLS 367
              S  S L  +   L  L +  +K+K +      +L +LY+L+L  NQ+E+I+ L  L+
Sbjct: 143 HNLSDLSPLS-NMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLT 199

Query: 368 GLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLS 427
            L+      NQ+   ++     ++ LN++ + +N +T        SPL     L  + + 
Sbjct: 200 SLHYFTAYVNQIT--DITPVANMTRLNSLKIGNNKIT------DLSPLANLSQLTWLEIG 251

Query: 428 YNRISSLFDDWISSMTSLKELDLRHNNFSFIP--DQLDSIVSNKLTLDLSFNQIAIVDLR 485
            N+IS +  + +  +T LK L++  N  S I   + L  +     +L L+ NQ+   D+ 
Sbjct: 252 TNQISDI--NAVKDLTKLKMLNVGSNQISDISVLNNLSQLN----SLFLNNNQLGNEDME 305

Query: 486 TL 487
            +
Sbjct: 306 VI 307

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  125 bits (316), Expect = 1e-31
 Identities = 63/289 (21%), Positives = 123/289 (42%), Gaps = 21/289 (7%)

Query: 93  SPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKL 152
                  L  + ++ +  NK IT +     +    L  L L  ++I+++       + K+
Sbjct: 80  DISPLSNLVKLTNLYIGTNK-ITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKM 134

Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI 212
             L+LG+N     D     N+T L  L +  +++ ++T     N+ +L SL ++ N I  
Sbjct: 135 YSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIED 191

Query: 213 LPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP 272
           +     + L  L  F A  N+         A M  L  +KI  +K  + +L     ANL 
Sbjct: 192 ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK--ITDLSP--LANLS 243

Query: 273 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNK 332
            L  + +G + I+++ +    + T +  + + G  +++ +      +  +L  L L  N+
Sbjct: 244 QLTWLEIGTNQISDINA--VKDLTKLKMLNV-GSNQISDISV--LNNLSQLNSLFLNNNQ 298

Query: 333 LKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQ 381
           L      +   L  L TL L  N + +I  L  LS ++S D +   +++
Sbjct: 299 LGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIKK 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  154 bits (391), Expect = 9e-40
 Identities = 74/471 (15%), Positives = 161/471 (34%), Gaps = 58/471 (12%)

Query: 64  NFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
            F+    + + + +     ++ P    +              I    N  IT + K + +
Sbjct: 148 TFVDYDPREDFSDLIKDCINSDPQQKSI--KKSSRITLKDTQIGQLSNN-ITFVSKAVMR 204

Query: 124 GTPQLESLNLRGNSITEL------------YSGVFQYVP-------KLQVLDLGSNDVAY 164
              +L    +  +                 Y+  ++           L  +++ +     
Sbjct: 205 -LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263

Query: 165 MDPEIFKNLTSLRILNLDHNQLINLTRAIFN--------NVPNLRSLDISGNNISIL-PS 215
             P   K L  ++++N+  N+ I+  +   +            ++ + I  NN+      
Sbjct: 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323

Query: 216 GVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLN 275
                ++KL       N+ +      F     L  + ++Y  + + E+P+        + 
Sbjct: 324 TSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAY--NQITEIPANFCGFTEQVE 380

Query: 276 TVILGESSIAELPSDLF-WNSTNITNIVLTG-------HKKLTSLPSTLFRDCKKLVKLE 327
            +    + +  +P+     + + ++ I  +         K    L  T F+    +  + 
Sbjct: 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK-GINVSSIN 439

Query: 328 LQRNKLKYLPENLFESLKELYTLNLKNNQLENI---------TSLVGLSGLNSLDLSWNQ 378
           L  N++   P+ LF +   L ++NL  N L  I          +      L S+DL +N+
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499

Query: 379 LEQI-NLIAFDGLSSLNTVDLSHNLLT-FDEYQYGYSPLKQCVNLETINLSYNRISSLFD 436
           L ++ +      L  L  +DLS+N  + F       S LK        +   NR    + 
Sbjct: 500 LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559

Query: 437 DWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTL 487
           + I+   SL +L +  N+   + +    I  N   LD+  N    +DL  +
Sbjct: 560 EGITLCPSLTQLQIGSNDIRKVNE---KITPNISVLDIKDNPNISIDLSYV 607

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  139 bits (353), Expect = 7e-35
 Identities = 57/392 (14%), Positives = 130/392 (33%), Gaps = 54/392 (13%)

Query: 94  PPYFDGLHFVKHILLSHNKEITGLHKDIFKGT--------PQLESLNLRGNSITEL-YSG 144
           P +   L  ++ I ++ N+      +               +++ + +  N++       
Sbjct: 266 PTFLKALPEMQLINVACNR-GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324

Query: 145 VFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLD 204
             Q + KL +L+   N +    P    +   L  LNL +NQ+  +          + +L 
Sbjct: 325 SLQKMKKLGMLECLYNQLEGKLPAFG-SEIKLASLNLAYNQITEIPANFCGFTEQVENLS 383

Query: 205 ISGNNISILPSGVF-SDLRKLQTFYANSNRFQMFPKDLFAEM-------KYLQVIKISYH 256
            + N +  +P+      +  +     + N         F  +         +  I +S +
Sbjct: 384 FAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443

Query: 257 KDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 316
           +  + + P  LF+    L+++ L  + + E+P +                       +  
Sbjct: 444 Q--ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL------------------KDENEN 483

Query: 317 FRDCKKLVKLELQRNKLKYLPENL-FESLKELYTLNLKNNQLE-------NITSLVGLSG 368
           F++   L  ++L+ NKL  L ++    +L  L  ++L  N          N ++L G   
Sbjct: 484 FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGI 543

Query: 369 LNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSY 428
            N  D   N+  +          SL  + +  N +            K   N+  +++  
Sbjct: 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-------KVNEKITPNISVLDIKD 596

Query: 429 NRISSLFDDWISSMTSLKELDLRHNNFSFIPD 460
           N   S+   ++          L ++    I  
Sbjct: 597 NPNISIDLSYVCPYIEAGMYMLFYDKTQDIRG 628

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  137 bits (348), Expect = 3e-34
 Identities = 73/393 (18%), Positives = 138/393 (35%), Gaps = 47/393 (11%)

Query: 107 LLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSG-----VFQYVPKLQVLDLGSND 161
                K      K      P+ +  +L  + I             +   K   +   SN+
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 162 VAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDL 221
           + ++   +   LT LR   + ++  +           N                  + +L
Sbjct: 195 ITFVSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEYA----QQYKTEDLK-WDNL 248

Query: 222 RKLQTFY-ANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILG 280
           + L      N       P  L   +  +Q+I ++ ++    E     +  L         
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAP----- 302

Query: 281 ESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP-STLFRDCKKLVKLELQRNKLKYLPEN 339
                            I  I + G+  L + P  T  +  KKL  LE   N+L+     
Sbjct: 303 -------------VGEKIQIIYI-GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA 348

Query: 340 LFESLKELYTLNLKNNQLENI-TSLVG-LSGLNSLDLSWNQLEQI-NLIAFDGLSSLNTV 396
            F S  +L +LNL  NQ+  I  +  G    + +L  + N+L+ I N+     +S ++ +
Sbjct: 349 -FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAI 407

Query: 397 DLSHNLLT-FDEYQYGYSP--LKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHN 453
           D S+N +   D   +        + +N+ +INLS N+IS    +  S+ + L  ++L  N
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467

Query: 454 NFSFIPDQLDSIVSNKL-------TLDLSFNQI 479
             + IP       +          ++DL FN++
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  133 bits (337), Expect = 8e-33
 Identities = 49/362 (13%), Positives = 119/362 (32%), Gaps = 38/362 (10%)

Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD----PEIFKNLTSLRILNLD 182
           ++  L+L G   +         + +L+VL LGS+     +    P+      S       
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 183 HNQLIN--LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKD 240
                   +      +  +L    I+ +              K       SN      K 
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201

Query: 241 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITN 300
           +   +  L+   +       + +                  +   +     + N  ++T+
Sbjct: 202 VM-RLTKLRQFYMGNSPFVAENICE-------AWENENSEYAQQYKTEDLKWDNLKDLTD 253

Query: 301 IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 360
           + +     LT LP+ L     ++  + +  N+     +                +  + +
Sbjct: 254 VEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQL--------------KDDWQAL 298

Query: 361 TSLVGLSGLNSLDLSWNQLEQINL-IAFDGLSSLNTVDLSHNLLTFDEYQYGYSP-LKQC 418
                   +  + + +N L+   +  +   +  L  ++  +N L       G  P     
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE------GKLPAFGSE 352

Query: 419 VNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLT-LDLSFN 477
           + L ++NL+YN+I+ +  ++      ++ L   HN   +IP+  D+   + ++ +D S+N
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN 412

Query: 478 QI 479
           +I
Sbjct: 413 EI 414

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  125 bits (315), Expect = 4e-30
 Identities = 57/322 (17%), Positives = 127/322 (39%), Gaps = 33/322 (10%)

Query: 94  PPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQ 153
                 +  +  +   +N+ + G          +L SLNL  N ITE+ +    +  +++
Sbjct: 323 ETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEI-KLASLNLAYNQITEIPANFCGFTEQVE 380

Query: 154 VLDLGSNDVAYMDPEIF-KNLTSLRILNLDHNQLINLTRAIFNNVP-------NLRSLDI 205
            L    N + Y+      K+++ +  ++  +N++ ++    F+ +        N+ S+++
Sbjct: 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440

Query: 206 SGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDL-------FAEMKYLQVIKISYHKD 258
           S N IS  P  +FS    L +     N     PK+        F     L  I + ++K 
Sbjct: 441 SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK- 499

Query: 259 SLKELPSGL-FANLPLLNTVILGESSIAELPSDLFWNSTNIT------NIVLTGHKKLTS 311
            L +L        LP L  + L  +S ++ P+    NS+ +            G++ L  
Sbjct: 500 -LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL-NSSTLKGFGIRNQRDAQGNRTLRE 557

Query: 312 LPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE--NITSLVGLSGL 369
            P  +   C  L +L++  N ++ + E +  ++     L++K+N     +++ +      
Sbjct: 558 WPEGITL-CPSLTQLQIGSNDIRKVNEKITPNIS---VLDIKDNPNISIDLSYVCPYIEA 613

Query: 370 NSLDLSWNQLEQINLIAFDGLS 391
               L +++ + I       + 
Sbjct: 614 GMYMLFYDKTQDIRGCDALDIK 635

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  107 bits (268), Expect = 3e-24
 Identities = 45/295 (15%), Positives = 107/295 (36%), Gaps = 28/295 (9%)

Query: 93  SPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVF-QYVPK 151
             P F     +  + L++N+ IT +  +    T Q+E+L+   N +  + +    + V  
Sbjct: 345 KLPAFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403

Query: 152 LQVLDLGSNDVAYMDPEIFK-------NLTSLRILNLDHNQLINLTRAIFNNVPNLRSLD 204
           +  +D   N++  +D + F           ++  +NL +NQ+    + +F+    L S++
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 205 ISGNNISILPSGV-------FSDLRKLQTFYANSNRFQMFPKDL-FAEMKYLQVIKISYH 256
           + GN ++ +P          F +   L +     N+      D     + YL  I +SY+
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN 523

Query: 257 KDSLKELPSGLF-----ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTS 311
                + P+            + N      +       +      ++T + + G   +  
Sbjct: 524 S--FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI-GSNDIRK 580

Query: 312 LPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGL 366
           +   +      +  L+++ N    +  +      E     L  ++ ++I     L
Sbjct: 581 VNEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL 632

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  106 bits (267), Expect = 3e-24
 Identities = 38/324 (11%), Positives = 93/324 (28%), Gaps = 29/324 (8%)

Query: 172 NLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVF----SDLRKLQTF 227
           +   +  L+L+              +  L  L +  +   +          S     +  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
                 +Q    D      +  +IK   + D  ++              +    ++I  +
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV 198

Query: 288 PSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKEL 347
              +    T +    + G+    +       + +          + K      +++LK+L
Sbjct: 199 SKAVM-RLTKLRQFYM-GNSPFVAENICEAWENENSEYA----QQYKTEDLK-WDNLKDL 251

Query: 348 YTLNL-KNNQLENI-TSLVGLSGLNSLDLSWNQLEQI--------NLIAFDGLSSLNTVD 397
             + +     L  + T L  L  +  ++++ N+             L        +  + 
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 398 LSHNLLTFDEYQYGYSP--LKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
           + +N L             L++   L  +   YN++         S   L  L+L +N  
Sbjct: 312 IGYNNLK-----TFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQI 365

Query: 456 SFIPDQLDSIVSNKLTLDLSFNQI 479
           + IP            L  + N++
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKL 389

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 84.3 bits (209), Expect = 5e-17
 Identities = 27/294 (9%), Positives = 83/294 (28%), Gaps = 61/294 (20%)

Query: 194 FNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKI 253
            N+   +  L + G   S         L +L+     S+                   K+
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE-----------------KV 119

Query: 254 SYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP 313
           +      K + + +         +   ++ +   P     + +++    +    +  S+ 
Sbjct: 120 NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPR---EDFSDLIKDCINSDPQQKSIK 176

Query: 314 STLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLD 373
               R   K  ++    N + ++ + +   L +L    + N+      +        + +
Sbjct: 177 K-SSRITLKDTQIGQLSNNITFVSKAVMR-LTKLRQFYMGNSPF---VAENICEAWENEN 231

Query: 374 LSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISS 433
             + Q                T DL  + L                +L  + +      +
Sbjct: 232 SEYAQQ-------------YKTEDLKWDNLK---------------DLTDVEVYNCPNLT 263

Query: 434 LFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVS-------NKLT-LDLSFNQI 479
               ++ ++  ++ +++  N         D   +        K+  + + +N +
Sbjct: 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 82.4 bits (204), Expect = 2e-16
 Identities = 33/172 (19%), Positives = 56/172 (32%), Gaps = 12/172 (6%)

Query: 82  FSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGT-PQLESLNLRGNSITE 140
            +  P N        F   + +  I L  NK +T L  D    T P L  ++L  NS ++
Sbjct: 469 LTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSK 527

Query: 141 LYSGVFQYVPKLQVLDLGSNDVAY------MDPEIFKNLTSLRILNLDHNQLINLTRAIF 194
             +        L+   + +   A         PE      SL  L +  N +  +   I 
Sbjct: 528 FPTQPLN-SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT 586

Query: 195 NNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
              PN+  LDI  N    +         +   +    ++ Q        ++K
Sbjct: 587 ---PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  145 bits (368), Expect = 1e-38
 Identities = 53/271 (19%), Positives = 103/271 (38%), Gaps = 34/271 (12%)

Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSND-VAYMDPE 168
              ++T +  D+ +       L      +  +  G F     L+ +++  ND +  ++ +
Sbjct: 17  QESKVTEIPSDLPRNA---IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73

Query: 169 IFKNLTSLRILNLDH-NQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
           +F NL  L  + ++  N L+ +    F N+PNL+ L IS   I  LP        +    
Sbjct: 74  VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 133

Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP-LLNTVILGESSIAE 286
               N                          ++  +    F  L      + L ++ I E
Sbjct: 134 DIQDN-------------------------INIHTIERNSFVGLSFESVILWLNKNGIQE 168

Query: 287 LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKE 346
           + +  F N T +  + L+ +  L  LP+ +F      V L++ R ++  LP    E+LK+
Sbjct: 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK 227

Query: 347 LYTLNLKNNQLENITSLVGLSGLNSLDLSWN 377
           L   +     L+ + +L  L  L    L++ 
Sbjct: 228 LRARST--YNLKKLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  139 bits (352), Expect = 1e-36
 Identities = 55/298 (18%), Positives = 108/298 (36%), Gaps = 42/298 (14%)

Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI-S 211
           +V     + V  +  ++ +N   L        +L  + +  F+   +L  ++IS N++  
Sbjct: 12  RVFLCQESKVTEIPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 212 ILPSGVFSDLRKLQTFY-ANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
           ++ + VFS+L KL       +N                           L  +    F N
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANN--------------------------LLYINPEAFQN 102

Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC-KKLVKLELQ 329
           LP L  +++  + I  LP     +S     + +  +  + ++    F     + V L L 
Sbjct: 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162

Query: 330 RNKLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAF 387
           +N ++ +  + F   +        NN LE +      G SG   LD+S  ++  +     
Sbjct: 163 KNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222

Query: 388 DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSL 445
           + L  L      +NL            L++ V L   +L+Y      F +W   ++ L
Sbjct: 223 ENLKKLRARST-YNLKKLP-------TLEKLVALMEASLTYPSHCCAFANWRRQISEL 272

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  118 bits (298), Expect = 3e-29
 Identities = 47/252 (18%), Positives = 97/252 (38%), Gaps = 14/252 (5%)

Query: 225 QTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI 284
           + F    ++    P DL      L+          L+ +  G F+    L  + + ++ +
Sbjct: 12  RVFLCQESKVTEIPSDLPRNAIELRF-----VLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 285 AE-LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 343
            E + +D+F N   +  I +     L  +    F++   L  L +    +K+LP+     
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 126

Query: 344 LKELYTLNLK-NNQLENI--TSLVGLSG-LNSLDLSWNQLEQINLIAFDGLSSLNTVDLS 399
             +   L+++ N  +  I   S VGLS     L L+ N +++I+  AF+G          
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186

Query: 400 HNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP 459
           +N L     +              +++S  RI SL    + ++  L+     +       
Sbjct: 187 NNNLE----ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 242

Query: 460 DQLDSIVSNKLT 471
           ++L +++   LT
Sbjct: 243 EKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  116 bits (291), Expect = 2e-28
 Identities = 43/223 (19%), Positives = 75/223 (33%), Gaps = 18/223 (8%)

Query: 69  FSKLNITTINTLAFSNSPS----------NVGVLSPPYFDGLHFVKHILLSHNKEITGLH 118
           F    +  I   AFS               + V+    F  L  +  I +     +  ++
Sbjct: 37  FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96

Query: 119 KDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSND-VAYMDPEIFKNLTS-L 176
            + F+  P L+ L +    I  L      +  +  +LD+  N  +  ++   F  L+   
Sbjct: 97  PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156

Query: 177 RILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM 236
            IL L+ N +  +  + FN            NN+  LP+ VF           +  R   
Sbjct: 157 VILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216

Query: 237 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVIL 279
            P      +K L+         +LK+LP+     L  L    L
Sbjct: 217 LPSYGLENLKKLRARSTY----NLKKLPT--LEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 26/154 (16%), Positives = 49/154 (31%), Gaps = 19/154 (12%)

Query: 55  FTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEI 114
                   +  + +   +NI TI   +F        +L               L+ N  I
Sbjct: 122 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW--------------LNKNG-I 166

Query: 115 TGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLT 174
             +H   F GT   E      N++ EL + VF       +LD+    +  +     +NL 
Sbjct: 167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 226

Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
            LR  +  + + +         +  L    ++  
Sbjct: 227 KLRARSTYNLKKLP----TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.9 bits (171), Expect = 5e-13
 Identities = 27/155 (17%), Positives = 51/155 (32%), Gaps = 33/155 (21%)

Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS--LVGLSGLNSLDLSWNQ-LEQI 382
              Q +K+  +P +L  +  EL        +L  I      G   L  +++S N  LE I
Sbjct: 14  FLCQESKVTEIPSDLPRNAIELR---FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 383 NLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSM 442
               F  L  L+ + +                              N +  +  +   ++
Sbjct: 71  EADVFSNLPKLHEIRIEKA---------------------------NNLLYINPEAFQNL 103

Query: 443 TSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFN 477
            +L+ L + +     +PD        K+ LD+  N
Sbjct: 104 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  139 bits (353), Expect = 2e-37
 Identities = 49/231 (21%), Positives = 90/231 (38%), Gaps = 29/231 (12%)

Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
            ++L+L  N +  L S  F   P+LQVLDL   ++  ++   +++L+ L  L L  N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
           +L    F+ + +L+ L     N++ L +     L+ L+      N  Q F          
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP------- 142

Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT--- 304
                               F+NL  L  + L  + I  +          +  + L+   
Sbjct: 143 ------------------EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 305 GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
               +  +    F    +L +L L  N+LK +P+ +F+ L  L  + L  N
Sbjct: 185 SLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  122 bits (307), Expect = 4e-31
 Identities = 55/235 (23%), Positives = 96/235 (40%), Gaps = 18/235 (7%)

Query: 226 TFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA 285
           T+      F   P +L    K L +       + L+ L S  F + P L  + L    I 
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNLDL-----SFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 286 ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLK 345
            +    + + ++++ ++LTG   + SL    F     L KL      L  L       LK
Sbjct: 66  TIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 346 ELYTLNLKNNQLENITS---LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTV----DL 398
            L  LN+ +N +++         L+ L  LDLS N+++ I       L  +  +    DL
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 399 SHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHN 453
           S N + F +         + + L+ + L  N++ S+ D     +TSL+++ L  N
Sbjct: 185 SLNPMNFIQ-----PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  107 bits (270), Expect = 4e-26
 Identities = 62/250 (24%), Positives = 103/250 (41%), Gaps = 42/250 (16%)

Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-- 364
                +P  L    K L   +L  N L++L    F S  EL  L+L   +++ I      
Sbjct: 17  LNFYKIPDNLPFSTKNL---DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73

Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT-FDEYQYGYSPLKQCVNLET 423
            LS L++L L+ N ++ + L AF GLSSL  +      L   + +     P+     L+ 
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF-----PIGHLKTLKE 128

Query: 424 INLSYNRISSL-FDDWISSMTSLKELDLRHNNFSFIP----DQLDSIVSNKLTLDLSFNQ 478
           +N+++N I S    ++ S++T+L+ LDL  N    I       L  +    L+LDLS N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 479 IAIVD--------LRTLE--------IKAAAQDPNEDSTMVARSANIVILNDNPIACNCS 522
           +  +         L+ L         +     D          S   + L+ NP  C+C 
Sbjct: 189 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLT-------SLQKIWLHTNPWDCSCP 241

Query: 523 NYDLIRFVSK 532
               I ++S+
Sbjct: 242 R---IDYLSR 248

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.5 bits (168), Expect = 7e-13
 Identities = 33/153 (21%), Positives = 55/153 (35%), Gaps = 33/153 (21%)

Query: 329 QRNKLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIA 386
                  +P+NL  S K L    L  N L ++   S      L  LDLS  +++ I   A
Sbjct: 15  MELNFYKIPDNLPFSTKNLD---LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 387 FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLK 446
           +  L                             +L T+ L+ N I SL     S ++SL+
Sbjct: 72  YQSL----------------------------SHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 447 ELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
           +L     N + + +     +     L+++ N I
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 30/120 (25%)

Query: 93  SPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKL 152
            P YF  L                           LE L+L  N I  +Y    + + ++
Sbjct: 141 LPEYFSNLT-------------------------NLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 153 QV----LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
            +    LDL  N + ++ P  FK +  L+ L LD NQL ++   IF+ + +L+ + +  N
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  144 bits (365), Expect = 1e-36
 Identities = 81/398 (20%), Positives = 157/398 (39%), Gaps = 51/398 (12%)

Query: 125 TPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHN 184
            P+ ++L+L  NSI+EL      ++ +L+VL L  N +  +D  +F     L  L++ HN
Sbjct: 51  PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110

Query: 185 QLINLTRAIFNNVPNLRSLDISGNNISILP-SGVFSDLRKLQTFYANSNRFQMFPKDLFA 243
           +L N++      + +LR LD+S N+  +LP    F +L KL     ++ +F+       A
Sbjct: 111 RLQNIS---CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167

Query: 244 EMKYLQVIKISYHKDSLKELPSGLFANLPL----------------------------LN 275
            +  L  I +      +K   +                                    L+
Sbjct: 168 HLH-LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 276 TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL----FRDCKKLVKLELQRN 331
            + L + +   L + L   +   T + +T     T+   ++    F   + +  L +   
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 332 KLKYLPE-----NLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQINL 384
            +    +         +LK L   ++KN         +    + +N   LS +    I++
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

Query: 385 IAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD--DWISSM 442
           +     SS   ++ + N+ T D    G S L     L+T+ L  N + + F       +M
Sbjct: 347 VCPPSPSSFTFLNFTQNVFT-DSVFQGCSTL---KRLQTLILQRNGLKNFFKVALMTKNM 402

Query: 443 TSLKELDLRHNNFSFIP-DQLDSIVSNKLTLDLSFNQI 479
           +SL+ LD+  N+ +    D+  +   + L L+LS N +
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  108 bits (272), Expect = 6e-25
 Identities = 73/437 (16%), Positives = 136/437 (31%), Gaps = 81/437 (18%)

Query: 92  LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGN-----------SITE 140
           L  P    L  ++ + LSHN+ I  L   +F     LE L++  N           S+  
Sbjct: 67  LRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRH 125

Query: 141 LY-----------SGVFQYVPKLQVLDLGSNDVAYMDPEIFKNL-TSLRILNLDHNQLIN 188
           L               F  + KL  L L +     +D     +L  S  +L+L    +  
Sbjct: 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG 185

Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLF------ 242
                     N   L +  +  S+    V   +  L     ++ +               
Sbjct: 186 GETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244

Query: 243 -------------------------------AEMKYLQVIKISYHKDSLKELPSGLFANL 271
                                            ++YL +  ++  +   +E  +     L
Sbjct: 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL 304

Query: 272 PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN 331
             L    +           L+     +   +L+       +             L   +N
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD-TPFIHMVCPPSPSSFTFLNFTQN 363

Query: 332 KLKYLPENLFESLKELYTLNLKNNQLENITSLVG-LSGLNSLDLSWNQLEQINLIAFDGL 390
                      +LK L TL L+ N L+N   +      ++SL+     L  +N  A+D  
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423

Query: 391 ----SSLNTVDLSHNLLT---FDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMT 443
                S+  ++LS N+LT   F               ++ ++L  NRI S+    ++ + 
Sbjct: 424 CAWAESILVLNLSSNMLTGSVFR---------CLPPKVKVLDLHNNRIMSI-PKDVTHLQ 473

Query: 444 SLKELDLRHNNFSFIPD 460
           +L+EL++  N    +PD
Sbjct: 474 ALQELNVASNQLKSVPD 490

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 99.2 bits (247), Expect = 6e-22
 Identities = 43/350 (12%), Positives = 113/350 (32%), Gaps = 22/350 (6%)

Query: 69  FSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVK-HILLSHNKEITGLHKDIFKGTPQ 127
              +    ++ +       ++           +    H++   N   +            
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH 222

Query: 128 LE--SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
           L+  ++ L   +   L + + +      +L++    +        K         +++  
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282

Query: 186 LINLT----------RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ 235
           + NLT                + +L    +           ++S   ++     + +   
Sbjct: 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342

Query: 236 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP--SDLFW 293
                          +  + +     +      + L  L T+IL  + +      + +  
Sbjct: 343 FIHMVCPPSPSSFTFLNFTQNV--FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK 400

Query: 294 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESL-KELYTLNL 352
           N +++  + ++ +   +          + ++ L L  N L     ++F  L  ++  L+L
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML---TGSVFRCLPPKVKVLDL 457

Query: 353 KNNQLENITSLV-GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
            NN++ +I   V  L  L  L+++ NQL+ +    FD L+SL  + L  N
Sbjct: 458 HNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 70.3 bits (172), Expect = 9e-13
 Identities = 28/195 (14%), Positives = 70/195 (35%), Gaps = 33/195 (16%)

Query: 67  SLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTP 126
           +L+S      I  L+ S++P     +             +  + N   T           
Sbjct: 323 ALYSVFAEMNIKMLSISDTPF----IHMVCPPSPSSFTFLNFTQNV-FTDSVFQGCSTLK 377

Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTS----------- 175
           +L++L L+ N +      V      +  L+     +  ++   +    +           
Sbjct: 378 RLQTLILQRNGLKNF-FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436

Query: 176 ---------------LRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSD 220
                          +++L+L +N+++++ +    ++  L+ L+++ N +  +P GVF  
Sbjct: 437 SNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDR 495

Query: 221 LRKLQTFYANSNRFQ 235
           L  LQ  + + N + 
Sbjct: 496 LTSLQYIWLHDNPWD 510

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  140 bits (355), Expect = 7e-36
 Identities = 73/373 (19%), Positives = 145/373 (38%), Gaps = 36/373 (9%)

Query: 107 LLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD 166
            ++ +  I  +  D      +     L   ++T+  S     + ++  L      +    
Sbjct: 7   TITQDTPINQIFTD--TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--S 60

Query: 167 PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQT 226
            +  + L +L  +N  +NQL ++T     N+  L  + ++ N I+ +     ++L  L  
Sbjct: 61  IDGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP--LANLTNLTG 116

Query: 227 FYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE 286
               +N+           +  L  +++S +   + ++ +   + L  L  +  G      
Sbjct: 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNT--ISDISA--LSGLTSLQQLSFGNQVTDL 170

Query: 287 LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKE 346
            P     N T +  + +    K++ +          L  L    N++  +       L  
Sbjct: 171 KP---LANLTTLERLDI-SSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTN 222

Query: 347 LYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFD 406
           L  L+L  NQL++I +L  L+ L  LDL+ NQ+   NL    GL+ L  + L  N ++  
Sbjct: 223 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS--NLAPLSGLTKLTELKLGANQIS-- 278

Query: 407 EYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIV 466
                 SPL     L  + L+ N++  +    IS++ +L  L L  NN S I     S +
Sbjct: 279 ----NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSL 330

Query: 467 SNKLTLDLSFNQI 479
           +    L    N++
Sbjct: 331 TKLQRLFFYNNKV 343

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  140 bits (354), Expect = 1e-35
 Identities = 76/388 (19%), Positives = 155/388 (39%), Gaps = 35/388 (9%)

Query: 95  PYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQV 154
                L  +  IL+++N+ I  +          L  L L  N IT++     + +  L  
Sbjct: 84  TPLKNLTKLVDILMNNNQ-IADI--TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNR 138

Query: 155 LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILP 214
           L+L SN ++  D      LTSL+ L+  +            N+  L  LDIS N +S + 
Sbjct: 139 LELSSNTIS--DISALSGLTSLQQLSFGNQVTDLKP---LANLTTLERLDISSNKVSDIS 193

Query: 215 SGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLL 274
               + L  L++  A +N+           +  L  + ++ ++  LK++ +   A+L  L
Sbjct: 194 V--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ--LKDIGT--LASLTNL 245

Query: 275 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 334
             + L  + I+ L        T +T + L G  +++++          L  LEL  N+L+
Sbjct: 246 TDLDLANNQISNLAP--LSGLTKLTELKL-GANQISNISP--LAGLTALTNLELNENQLE 300

Query: 335 YLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLN 394
            +      +LK L  L L  N + +I+ +  L+ L  L    N++  ++  +   L+++N
Sbjct: 301 DISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS--SLANLTNIN 356

Query: 395 TVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNN 454
            +   HN ++        +PL     +  + L+    ++   +   +  S+         
Sbjct: 357 WLSAGHNQIS------DLTPLANLTRITQLGLNDQAWTNAPVN-YKANVSIPNTVKNVTG 409

Query: 455 FSFIPDQLDSIVSNKLTLDLSFNQIAIV 482
               P  + S   +    D+++N  +  
Sbjct: 410 ALIAPATI-SDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  123 bits (312), Expect = 2e-30
 Identities = 68/364 (18%), Positives = 139/364 (38%), Gaps = 32/364 (8%)

Query: 93  SPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKL 152
                  L  +  + LS N  I+ +      G   L+ L+  GN +T+L       +  L
Sbjct: 126 DIDPLKNLTNLNRLELSSNT-ISDI--SALSGLTSLQQLSF-GNQVTDLKP--LANLTTL 179

Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI 212
           + LD+ SN V+  D  +   LT+L  L   +NQ+ ++T      + NL  L ++GN +  
Sbjct: 180 ERLDISSNKVS--DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKD 235

Query: 213 LPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP 272
           + +   + L  L      +N+         + +  L  +K+  ++  +  +     A L 
Sbjct: 236 IGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ--ISNISP--LAGLT 287

Query: 273 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNK 332
            L  + L E+ + ++      N  N+T + L     ++ +         KL +L    NK
Sbjct: 288 ALTNLELNENQLEDISP--ISNLKNLTYLTL-YFNNISDISP--VSSLTKLQRLFFYNNK 342

Query: 333 LKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSS 392
           +  +      +L  +  L+  +NQ+ ++T L  L+ +  L L+        +     +S 
Sbjct: 343 VSDVSS--LANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSI 400

Query: 393 LNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRH 452
            NTV      L           +    +    ++++N  S   ++   + +    +    
Sbjct: 401 PNTVKNVTGALIAPA------TISDGGSYTEPDITWNLPSYT-NEVSYTFSQPVTIGKGT 453

Query: 453 NNFS 456
             FS
Sbjct: 454 TTFS 457

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 93.5 bits (233), Expect = 3e-20
 Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 22/213 (10%)

Query: 272 PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN 331
           PL +  I  ++ I ++ +D           VL G   +T   S    D  ++  L+  R 
Sbjct: 2   PLGSATITQDTPINQIFTDT--ALAEKMKTVL-GKTNVTDTVS--QTDLDQVTTLQADRL 56

Query: 332 KLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLS 391
            +K +     E L  L  +N  NNQL +IT L  L+ L  + ++ NQ+   ++     L+
Sbjct: 57  GIKSIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLT 112

Query: 392 SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLR 451
           +L  + L +N +T         PLK   NL  + LS N IS +    +S +TSL++L   
Sbjct: 113 NLTGLTLFNNQIT------DIDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG 164

Query: 452 HNNFSFIP-DQLDSIVSNKLTLDLSFNQIAIVD 483
           +      P   L ++      LD+S N+++ + 
Sbjct: 165 NQVTDLKPLANLTTLER----LDISSNKVSDIS 193

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  138 bits (350), Expect = 5e-35
 Identities = 76/396 (19%), Positives = 155/396 (39%), Gaps = 51/396 (12%)

Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
              LN+  N I+EL++     + KL++L +  N + Y+D  +FK    L  L+L HN+L+
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 188 NLTRAIFNNVPNLRSLDISGNNISILP-SGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
            ++    +   NL+ LD+S N    LP    F ++ +L+    ++   +       A + 
Sbjct: 83  KIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 247 YLQVIKISYHKDSLKELPSGL-----------------FANLPLLNTVILGESSIAELPS 289
             +V+ +       KE P GL                 F  +  ++   +    ++ +  
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199

Query: 290 DLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK----------------KLVKLELQRNKL 333
            L  N  +    +L   +    L +    + +                 +    +   KL
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259

Query: 334 KYLP-----ENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQINLIA 386
           +        +    SLK L    + ++      S +    S +N  + + +    ++++ 
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319

Query: 387 FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD--DWISSMTS 444
              +S    +D S+NLLT   ++           LET+ L  N++  L    +  + M S
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFE----NCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375

Query: 445 LKELDLRHNNFSFIPDQLDSIVSNKLT-LDLSFNQI 479
           L++LD+  N+ S+   + D   +  L  L++S N +
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  138 bits (349), Expect = 7e-35
 Identities = 73/414 (17%), Positives = 140/414 (33%), Gaps = 50/414 (12%)

Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
           +S N  I+ L         +L  L +  N I  L   VF++  +L+ LDL  N +  +  
Sbjct: 28  ISQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS- 85

Query: 168 EIFKNLTSLRILNLDHNQLINLTR-AIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQT 226
                  +L+ L+L  N    L     F N+  L+ L +S  ++        + L   + 
Sbjct: 86  --CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV 143

Query: 227 F-YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLN----TVILGE 281
                    +    +   +     +  +         +       +  L       +L +
Sbjct: 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED 203

Query: 282 SSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL----FRDCKKLVKLELQRNKLKYLP 337
           +  +   S L    TN     LT +   T+  S +          +    +   KL+   
Sbjct: 204 NKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL 263

Query: 338 -----ENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQINLIAFDGL 390
                +    SLK L    + ++      S +    S +N  + + +    ++++    +
Sbjct: 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI 323

Query: 391 SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD--DWISSMTSLKEL 448
           S    +D S+NLLT   ++           LET+ L  N++  L    +  + M SL++L
Sbjct: 324 SPFLHLDFSNNLLTDTVFE----NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379

Query: 449 DLRHNNFSFIPD------------------QLDSIVSNKLT-----LDLSFNQI 479
           D+  N+ S+                      L   +   L      LDL  N+I
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKI 433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  127 bits (321), Expect = 3e-31
 Identities = 74/401 (18%), Positives = 134/401 (33%), Gaps = 28/401 (6%)

Query: 97  FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQV-L 155
                 +KH+ LS N          F    QL+ L L    + +       ++   +V L
Sbjct: 86  CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLL 145

Query: 156 DLGSNDVAYMDPEIFKNL--TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISIL 213
            LG       DPE  ++    SL I+   + +   +       V NL   +I        
Sbjct: 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205

Query: 214 PSGVFSDLRKLQTFYANSN----RFQMFPKDLFA--------EMKYLQVIKISYHKDSLK 261
            S   S L KLQT    SN      +                 + Y  +  +        
Sbjct: 206 CSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF 265

Query: 262 ELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK 321
                   +L  L+   +         S ++   +N+     T       +         
Sbjct: 266 RDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG-TRMVHMLCPSKIS 324

Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG----LSGLNSLDLSWN 377
             + L+   N L          L EL TL L+ NQL+ ++ +      +  L  LD+S N
Sbjct: 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384

Query: 378 QLEQI-NLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD 436
            +             SL ++++S N+LT                ++ ++L  N+I S+  
Sbjct: 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDT------IFRCLPPRIKVLDLHSNKIKSI-P 437

Query: 437 DWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFN 477
             +  + +L+EL++  N    +PD +   +++   + L  N
Sbjct: 438 KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  116 bits (291), Expect = 2e-27
 Identities = 53/392 (13%), Positives = 130/392 (33%), Gaps = 51/392 (13%)

Query: 130 SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINL 189
            ++   N +  +   +     K  +L++  N ++ +      +L+ LRIL + HN++  L
Sbjct: 4   LVDRSKNGLIHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60

Query: 190 TRAIFNNVPNLRSLDISGNNISILPS----------------------GVFSDLRKLQTF 227
             ++F     L  LD+S N +  +                          F ++ +L+  
Sbjct: 61  DISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120

Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
             ++   +       A +   +V+ +       KE P     +    +  I+   +  E 
Sbjct: 121 GLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDP-EGLQDFNTESLHIV-FPTNKEF 178

Query: 288 PSDLFWNSTNITNIVLTGHKKL------TSLPSTLFRDCKKLVKLELQRNKLKYLPENLF 341
              L  +   + N+ L+  K +      +   S L +         L  N ++    +  
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238

Query: 342 ESLKELYTLNLKNNQLENIT------------SLVGLSGLNSLDLSWNQLEQINLIAFDG 389
             L+ ++   +    + N+             S   L  L+   +  +         ++ 
Sbjct: 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298

Query: 390 LSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELD 449
            S++N  + + +               +      ++ S N ++    +    +T L+ L 
Sbjct: 299 FSNMNIKNFTVSGTRM----VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354

Query: 450 LRHNNFSFIPDQLDSI--VSNKLTLDLSFNQI 479
           L+ N    +    +    + +   LD+S N +
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  105 bits (263), Expect = 5e-24
 Identities = 48/300 (16%), Positives = 109/300 (36%), Gaps = 22/300 (7%)

Query: 60  LPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHK 119
           L D       S L     N    + + +N+      +   L  V H  + +         
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF-------- 252

Query: 120 DIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRIL 179
                   + ++ L+G      +      +  L +  + S+   +    I++  +++ I 
Sbjct: 253 -------SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305

Query: 180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPK 239
           N   +    +     + +     LD S N ++         L +L+T     N+ +   K
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365

Query: 240 --DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 297
             ++  +MK LQ + IS +  S  +   G  +    L ++ +  + + +           
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVS-YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIK 424

Query: 298 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 357
           + ++      K+ S+P  + +  + L +L +  N+LK +P+ +F+ L  L  + L  N  
Sbjct: 425 VLDL---HSNKIKSIPKQVVK-LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  105 bits (263), Expect = 5e-24
 Identities = 57/403 (14%), Positives = 125/403 (31%), Gaps = 70/403 (17%)

Query: 69  FSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVK-HILLSHNKEITGLHKDIFKGTPQ 127
              +    I+ +      +      P      +    HI+   NKE   +     K    
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191

Query: 128 LESLNLRGNSITELYSGVFQYVPKL----QVLDLGSNDVAYMDPEIFKNLTSLRILNLDH 183
           LE  N++        S     + KL    ++ +L  N++        + L  +    + +
Sbjct: 192 LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251

Query: 184 NQLINLT----------RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
             + N+                ++  L    +  +      S ++     +       + 
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311

Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFW 293
            +M      +++     +  S +   L +       +L  L T+IL  + + EL      
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNL--LTDTVFENCGHLTELETLILQMNQLKELSK---- 365

Query: 294 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY-LPENLFESLKELYTLNL 352
                               + +    K L +L++ +N + Y   +      K L +LN+
Sbjct: 366 -------------------IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406

Query: 353 KNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGY 412
            +N L +         +  LDL  N+++ I                    L         
Sbjct: 407 SSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVK--------------LE-------- 444

Query: 413 SPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
                   L+ +N++ N++ S+ D     +TSL+++ L  N +
Sbjct: 445 -------ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 81.4 bits (201), Expect = 3e-16
 Identities = 36/193 (18%), Positives = 74/193 (38%), Gaps = 31/193 (16%)

Query: 68  LFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQ 127
           ++   +   I     S +      +       +    H+  S+N  +T    +      +
Sbjct: 295 IYEIFSNMNIKNFTVSGTRM----VHMLCPSKISPFLHLDFSNNL-LTDTVFENCGHLTE 349

Query: 128 LESLNLRGNSITEL--YSGVFQYVPKLQVLDLGSNDVAYMDP-EIFKNLTSLRILN---- 180
           LE+L L+ N + EL   + +   +  LQ LD+  N V+Y +         SL  LN    
Sbjct: 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

Query: 181 ------------------LDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLR 222
                             L  N++ ++ + +   +  L+ L+++ N +  +P G+F  L 
Sbjct: 410 ILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVK-LEALQELNVASNQLKSVPDGIFDRLT 468

Query: 223 KLQTFYANSNRFQ 235
            LQ  + ++N + 
Sbjct: 469 SLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 79.9 bits (197), Expect = 7e-16
 Identities = 70/405 (17%), Positives = 146/405 (36%), Gaps = 46/405 (11%)

Query: 275 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 334
             V   ++ +  +P DL   S   T + ++    ++ L ++      KL  L +  N+++
Sbjct: 3   FLVDRSKNGLIHVPKDL---SQKTTILNIS-QNYISELWTSDILSLSKLRILIISHNRIQ 58

Query: 335 YLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIA-FDGLSSL 393
           YL  ++F+  +EL  L+L +N+L  I S      L  LDLS+N  + + +   F  +S L
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKI-SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQL 117

Query: 394 NTVDLSHN------------------LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLF 435
             + LS                    LL   E        +   +  T +L     ++  
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177

Query: 436 DDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQD 495
             +I  ++     +L  +N   + +         +   L  N      L  L +      
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP----KLSNLTLNNIETT 233

Query: 496 PNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLEL--VTDNLECFG 553
            N    ++    +  +   +    N      + F     + T  + L +  V  ++  F 
Sbjct: 234 WNSFIRILQLVWHTTVWYFS--ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP 291

Query: 554 NAGV--GINSVRPENLTC-DTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYE 610
            + +    +++  +N T   T+     C    S     + ++ S+  LT           
Sbjct: 292 QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS---PFLHLDFSNNLLTDTVFENC---- 344

Query: 611 DKKATSIQ-LILHNNSINHFLESPPESYKL--ITDLDLSYNNISH 652
               T ++ LIL  N +    +    + ++  +  LD+S N++S+
Sbjct: 345 -GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 76.8 bits (189), Expect = 6e-15
 Identities = 73/503 (14%), Positives = 142/503 (28%), Gaps = 70/503 (13%)

Query: 178 ILNLDHNQLINLTRAIFNNVP-NLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM 236
           +++   N L      +  ++      L+IS N IS L +     L KL+    + NR Q 
Sbjct: 4   LVDRSKNGL----IHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ- 58

Query: 237 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 296
                                     L   +F     L  + L  + + ++         
Sbjct: 59  -------------------------YLDISVFKFNQELEYLDLSHNKLVKISCHPT---V 90

Query: 297 NITNIVLTGHKKLTSLPST-LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
           N+ ++ L       +LP    F +  +L  L L    L+         L     L +   
Sbjct: 91  NLKHLDL-SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGE 149

Query: 356 QLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYG---- 411
                    GL   N+  L               +S     +L  + +            
Sbjct: 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209

Query: 412 -YSPLKQCVNLETINLSYNRISSLFDDWIS-----SMTSLKELDLRHNNFSFIPDQLDSI 465
                K   N +  NL+ N I + ++ +I        T++    + +       D  D  
Sbjct: 210 LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFD 269

Query: 466 VSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYD 525
            S      LS +Q+        +        N +      S   ++          S + 
Sbjct: 270 YSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV--HMLCPSKISPFL 327

Query: 526 LIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPY 585
            + F +  +T TV++    +T  LE        +  +                    +  
Sbjct: 328 HLDFSNNLLTDTVFENCGHLT-ELETLILQMNQLKELSKIAEM-------------TTQM 373

Query: 586 YSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDL 645
            S+  ++ S  S+++              + + L + +N +   +         I  LDL
Sbjct: 374 KSLQQLDISQNSVSYDE---KKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDL 428

Query: 646 SYNNISHVDTMY---PYLNHLEL 665
             N I  +         L  L +
Sbjct: 429 HSNKIKSIPKQVVKLEALQELNV 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  135 bits (342), Expect = 2e-34
 Identities = 78/354 (22%), Positives = 143/354 (40%), Gaps = 55/354 (15%)

Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
            Q   L L    ++ L     +  P L+ L    N +  + PE+ ++L SL + N +   
Sbjct: 71  RQAHELELNNLGLSSL----PELPPHLESLVASCNSLTEL-PELPQSLKSLLVDNNNLKA 125

Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEM 245
           L +L        P L  L +S N +  LP     +   L+    ++N  +  P    +  
Sbjct: 126 LSDLP-------PLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLPPS-- 174

Query: 246 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG 305
             L+ I    ++  L+ELP     NLP L  +    +S+ +LP        ++ +IV  G
Sbjct: 175 --LEFIAAGNNQ--LEELPE--LQNLPFLTAIYADNNSLKKLPDLP----LSLESIVA-G 223

Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG 365
           +  L  LP    ++   L  +    N LK LP    +    L  LN+++N L ++  L  
Sbjct: 224 NNILEELPE--LQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYLTDLPEL-- 275

Query: 366 LSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETIN 425
              L  LD+S N    ++    +   +L  ++ S N +         S      +LE +N
Sbjct: 276 PQSLTFLDVSENIFSGLS----ELPPNLYYLNASSNEIR--------SLCDLPPSLEELN 323

Query: 426 LSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
           +S N++  L     +    L+ L    N+ + +P+   ++      L + +N +
Sbjct: 324 VSNNKLIELP----ALPPRLERLIASFNHLAEVPELPQNLKQ----LHVEYNPL 369

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  128 bits (325), Expect = 5e-32
 Identities = 78/391 (19%), Positives = 150/391 (38%), Gaps = 71/391 (18%)

Query: 104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVA 163
           + ++ S N  +T L +        L   N    ++++L        P L+ L + +N + 
Sbjct: 94  ESLVASCNS-LTELPELPQSLK-SLLVDNNNLKALSDL-------PPLLEYLGVSNNQLE 144

Query: 164 YMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRK 223
            +     +N + L+I+++D+N L    + + +  P+L  +    N +  LP     +L  
Sbjct: 145 KLPE--LQNSSFLKIIDVDNNSL----KKLPDLPPSLEFIAAGNNQLEELPE--LQNLPF 196

Query: 224 LQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS 283
           L   YA++N  +  P    +    L+ I    +   L+ELP     NLP L T+    + 
Sbjct: 197 LTAIYADNNSLKKLPDLPLS----LESIVAGNNI--LEELPE--LQNLPFLTTIYADNNL 248

Query: 284 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 343
           +  LP        ++  + +     LT LP       + L  L++  N    L E     
Sbjct: 249 LKTLPDLP----PSLEALNV-RDNYLTDLPELP----QSLTFLDVSENIFSGLSE----L 295

Query: 344 LKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLL 403
              LY LN  +N++ ++  L     L  L++S N+L ++          L  +  S N L
Sbjct: 296 PPNLYYLNASSNEIRSLCDL--PPSLEELNVSNNKLIEL----PALPPRLERLIASFNHL 349

Query: 404 TFDEYQYGYSPLKQCVNLETINLSYNRISSLFD---------------DWISSMTSLKEL 448
                       +   NL+ +++ YN +    D               +      +LK+L
Sbjct: 350 A--------EVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQL 401

Query: 449 DLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
            +  N     PD  +S+      L ++  ++
Sbjct: 402 HVETNPLREFPDIPESVED----LRMNSERV 428

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  125 bits (316), Expect = 7e-31
 Identities = 69/376 (18%), Positives = 138/376 (36%), Gaps = 57/376 (15%)

Query: 104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVA 163
           +++ +S+N+ +  L     + +  L+ +++  NS+ +L        P L+ +  G+N + 
Sbjct: 134 EYLGVSNNQ-LEKL--PELQNSSFLKIIDVDNNSLKKL----PDLPPSLEFIAAGNNQLE 186

Query: 164 YMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRK 223
            +     +NL  L  +  D+N L    + + +   +L S+    N +  LP     +L  
Sbjct: 187 ELPE--LQNLPFLTAIYADNNSL----KKLPDLPLSLESIVAGNNILEELPE--LQNLPF 238

Query: 224 LQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS 283
           L T YA++N  +  P         L+ + +  +   L +LP  L  +L  L+      S 
Sbjct: 239 LTTIYADNNLLKTLPD----LPPSLEALNVRDNY--LTDLPE-LPQSLTFLDVSENIFSG 291

Query: 284 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 343
           ++ELP        N+  +  +   ++ SL          L +L +  NKL  LP      
Sbjct: 292 LSELP-------PNLYYLNAS-SNEIRSLCDLP----PSLEELNVSNNKLIELPA----L 335

Query: 344 LKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLL 403
              L  L    N L  +  L     L  L + +N L +      D   S+  + ++ +L 
Sbjct: 336 PPRLERLIASFNHLAEVPEL--PQNLKQLHVEYNPLREF----PDIPESVEDLRMNSHLA 389

Query: 404 TFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLD 463
              E            NL+ +++  N +    D       S+++L +         +   
Sbjct: 390 EVPE---------LPQNLKQLHVETNPLREFPD----IPESVEDLRMNSERVVDPYEFAH 436

Query: 464 SIVSNKLTLDLSFNQI 479
                        +  
Sbjct: 437 ETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  112 bits (283), Expect = 1e-26
 Identities = 65/353 (18%), Positives = 119/353 (33%), Gaps = 75/353 (21%)

Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
            L+      +++TE+       V          ++     P        + +  L     
Sbjct: 12  FLQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70

Query: 187 INLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
                           L+++   +S LP         L++  A+ N              
Sbjct: 71  -----------RQAHELELNNLGLSSLPE----LPPHLESLVASCNS------------- 102

Query: 247 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGH 306
                        L ELP     +L  L        ++++LP  L         + ++ +
Sbjct: 103 -------------LTELPELPQ-SLKSLLVDNNNLKALSDLPPLL-------EYLGVS-N 140

Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGL 366
            +L  LP    ++   L  +++  N LK LP+        L  +   NNQLE +  L  L
Sbjct: 141 NQLEKLPE--LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEELPELQNL 194

Query: 367 SGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL 426
             L ++    N L+++     D   SL ++   +N+L           L+    L TI  
Sbjct: 195 PFLTAIYADNNSLKKL----PDLPLSLESIVAGNNILEEL------PELQNLPFLTTIYA 244

Query: 427 SYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
             N + +L D       SL+ L++R N  + +P+   S+      LD+S N  
Sbjct: 245 DNNLLKTLPD----LPPSLEALNVRDNYLTDLPELPQSLTF----LDVSENIF 289

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 75.8 bits (187), Expect = 1e-14
 Identities = 52/267 (19%), Positives = 101/267 (37%), Gaps = 41/267 (15%)

Query: 93  SPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKL 152
             P    L F+  I   +N  +  L        P LE+LN+R N +T+L          L
Sbjct: 229 ELPELQNLPFLTTIYADNNL-LKTLPDLP----PSLEALNVRDNYLTDLPELP----QSL 279

Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI 212
             LD+  N  +     + +   +L  LN   N++    R++ +  P+L  L++S N +  
Sbjct: 280 TFLDVSENIFS----GLSELPPNLYYLNASSNEI----RSLCDLPPSLEELNVSNNKLIE 331

Query: 213 LPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP 272
           LP+       +L+   A+ N     P       + L+ + + Y+   L+E P  +  ++ 
Sbjct: 332 LPA----LPPRLERLIASFNHLAEVP----ELPQNLKQLHVEYNP--LREFPD-IPESVE 380

Query: 273 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNK 332
            L       S +AE+P        N+  + +     L   P         +  L +   +
Sbjct: 381 DLRM----NSHLAEVPELP----QNLKQLHV-ETNPLREFPDIPE----SVEDLRMNSER 427

Query: 333 LKYLPENLFESLKELYTLNLKNNQLEN 359
           +    E   E+  +L     +++   +
Sbjct: 428 VVDPYEFAHETTDKLEDDVFEHHHHHH 454

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  135 bits (343), Expect = 3e-33
 Identities = 95/370 (25%), Positives = 149/370 (40%), Gaps = 35/370 (9%)

Query: 126 PQLESLNLRGNSITELYSGV---FQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD 182
             LE L++  N+     S           LQ LD+  N ++          T L++LN+ 
Sbjct: 200 VNLEFLDVSSNNF----STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255

Query: 183 HNQLINLTRAI-FNNVPNLRSLDISGNNIS-ILPSGVFSDLRKLQTFYANSNRFQ-MFPK 239
            N        I    + +L+ L ++ N  +  +P  +      L     + N F    P 
Sbjct: 256 SN---QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312

Query: 240 DLFAEMKYLQVIKISYHKDSLK-ELPSGLFANLPLLNTVILGESSIA-ELPSDLFWNSTN 297
                   L+ + +S   ++   ELP      +  L  + L  +  + ELP  L   S +
Sbjct: 313 FFG-SCSLLESLALSS--NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369

Query: 298 ITNIVLTGHKKLT-SLPSTLFRDCKK-LVKLELQRNKLK-YLPENLFESLKELYTLNLKN 354
           +  + L      +  +   L ++ K  L +L LQ N     +P  L  +  EL +L+L  
Sbjct: 370 LLTLDL-SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSF 427

Query: 355 NQLE-NI-TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGY 412
           N L   I +SL  LS L  L L  N LE         + +L T+ L  N LT      G 
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT------GE 481

Query: 413 SP--LKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFS-FIPDQLDSIVSNK 469
            P  L  C NL  I+LS NR++     WI  + +L  L L +N+FS  IP +L     + 
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC-RSL 540

Query: 470 LTLDLSFNQI 479
           + LDL+ N  
Sbjct: 541 IWLDLNTNLF 550

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  130 bits (330), Expect = 1e-31
 Identities = 91/409 (22%), Positives = 157/409 (38%), Gaps = 47/409 (11%)

Query: 94  PPYFDGLHFVKHILLSHNKEITGLHKDI--FKGTPQLESLNLRGNSITELYSGVFQ--YV 149
                 L  ++ + LS++     ++  +  FK +  L SL+L  NS++   + +      
Sbjct: 70  SSSLLSLTGLESLFLSNS----HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125

Query: 150 PKLQVLDLGSNDVAYMDP-EIFKNLTSLRILNLDHNQL---INLTRAIFNNVPNLRSLDI 205
             L+ L++ SN + +         L SL +L+L  N +     +   + +    L+ L I
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 185

Query: 206 SGNNIS-ILPSGVFSDLRKLQTFYANSNRFQ-MFPKDLFAEMKYLQVIKISYHKDSLK-E 262
           SGN IS  +     S    L+    +SN F    P     +   LQ + IS   + L  +
Sbjct: 186 SGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISG--NKLSGD 238

Query: 263 LPSGLFANLPLLNTVILGESSIA-ELPSDLFWNSTNITNIVLTGHKKLT-SLPSTLFRDC 320
               +      L  + +  +     +P        ++  + L    K T  +P  L   C
Sbjct: 239 FSRAIS-TCTELKLLNISSNQFVGPIPP---LPLKSLQYLSL-AENKFTGEIPDFLSGAC 293

Query: 321 KKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLE---NITSLVGLSGLNSLDLSW 376
             L  L+L  N     +P     S   L +L L +N       + +L+ + GL  LDLS+
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352

Query: 377 NQLE-QINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSP----LKQCVNLETINLSYNRI 431
           N+   ++     +  +SL T+DLS N  +      G             L+ + L  N  
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFS------GPILPNLCQNPKNTLQELYLQNNGF 406

Query: 432 SSLFDDWISSMTSLKELDLRHNNFS-FIPDQLDSIVSNKLTLDLSFNQI 479
           +      +S+ + L  L L  N  S  IP  L S+ S    L L  N +
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL-SKLRDLKLWLNML 454

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  120 bits (302), Expect = 3e-28
 Identities = 87/407 (21%), Positives = 160/407 (39%), Gaps = 41/407 (10%)

Query: 90  GVLSPPYFDGLHFVKHILLSHNKEITG-LHKDIFKGTPQLESLNLRGNSIT-ELYSGVFQ 147
           G L       +  +K + LS N+  +G L + +   +  L +L+L  N+ +  +   + Q
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNE-FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390

Query: 148 YVPK-LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAI---FNNVPNLRSL 203
                LQ L L +N      P    N + L  L+L  N    L+  I     ++  LR L
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN---YLSGTIPSSLGSLSKLRDL 447

Query: 204 DISGNNIS-ILPSGVFSDLRKLQTFYANSNRFQ-MFPKDLFAEMKYLQVIKISYHKDSLK 261
            +  N +   +P      ++ L+T   + N      P  L +    L  I +S ++  L 
Sbjct: 448 KLWLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNR--LT 503

Query: 262 -ELPSGLFANLPLLNTVILGESSIA-ELPSDLFWNSTNITNIVLTGHKKLT-SLPSTLFR 318
            E+P  +   L  L  + L  +S +  +P++L  +  ++  + L        ++P+ +F+
Sbjct: 504 GEIPKWIG-RLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDL-NTNLFNGTIPAAMFK 560

Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI----TSLVGLSGLNSLDL 374
                   ++  N +        ++       +   N LE        L  LS  N  ++
Sbjct: 561 -----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615

Query: 375 SWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSP--LKQCVNLETINLSYNRIS 432
           +           FD   S+  +D+S+N+L+      GY P  +     L  +NL +N IS
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLS------GYIPKEIGSMPYLFILNLGHNDIS 669

Query: 433 SLFDDWISSMTSLKELDLRHNNFS-FIPDQLDSIVSNKLTLDLSFNQ 478
               D +  +  L  LDL  N     IP  + ++ +    +DLS N 
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL-TMLTEIDLSNNN 715

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  118 bits (298), Expect = 8e-28
 Identities = 81/346 (23%), Positives = 137/346 (39%), Gaps = 35/346 (10%)

Query: 152 LQVLDLGSNDVAYMDPEI---FKNLTSLRILNLDHNQLINLTRAI--FNNVPNLRSLDIS 206
           +  +DL S  +      +     +LT L  L L ++   ++  ++  F    +L SLD+S
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNS---HINGSVSGFKCSASLTSLDLS 108

Query: 207 GNNIS--ILPSGVFSDLRKLQTFYANSNRFQ-MFPKDLFAEMKYLQVIKISYHKDSLKEL 263
            N++S  +           L+    +SN            ++  L+V+ +S +  S    
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS-GAN 167

Query: 264 PSGLFA--NLPLLNTVILGESSIA-ELPSDLFWNSTNITNIVLTGHKKLT-SLPSTLFRD 319
             G         L  + +  + I+ ++         N+  + +      +  +P     D
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDV-SSNNFSTGIPF--LGD 221

Query: 320 CKKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQ 378
           C  L  L++  NKL       +  +  EL  LN+ +NQ       + L  L  L L+ N+
Sbjct: 222 CSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENK 280

Query: 379 LE-QINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSP--LKQCVNLETINLSYNRIS-SL 434
              +I         +L  +DLS N         G  P     C  LE++ LS N  S  L
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFY------GAVPPFFGSCSLLESLALSSNNFSGEL 334

Query: 435 FDDWISSMTSLKELDLRHNNFS-FIPDQLDSIVSNKLTLDLSFNQI 479
             D +  M  LK LDL  N FS  +P+ L ++ ++ LTLDLS N  
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  115 bits (291), Expect = 7e-27
 Identities = 95/412 (23%), Positives = 155/412 (37%), Gaps = 51/412 (12%)

Query: 104 KHILLSHNKEITG-LHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDV 162
           +++ L+ NK  TG +   +      L  L+L GN         F     L+ L L SN+ 
Sbjct: 272 QYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330

Query: 163 A-YMDPEIFKNLTSLRILNLDHNQLI-NLTRAIFNNVPNLRSLDISGNNIS--ILPSGVF 218
           +  +  +    +  L++L+L  N+    L  ++ N   +L +LD+S NN S  ILP+   
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390

Query: 219 SDLRKLQTFYANSNRFQ-MFPKDLFAEMKYLQVIKISYHKDSLK-ELPSGLFANLPLLNT 276
           +    LQ  Y  +N F    P  L      L  + +S+  + L   +PS L  +L  L  
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSF--NYLSGTIPSSL-GSLSKLRD 446

Query: 277 VILGESSI-AELPSDLFWNSTNITNIVLTGHKKLT-SLPSTLFRDCKKLVKLELQRNKLK 334
           + L  + +  E+P +       +  ++L     LT  +PS L   C  L  + L  N+L 
Sbjct: 447 LKLWLNMLEGEIPQE-LMYVKTLETLIL-DFNDLTGEIPSGLSN-CTNLNWISLSNNRLT 503

Query: 335 -YLPENLFESLKELYTLNLKNNQLE-NI-TSLVGLSGLNSLDLSWNQLE----------- 380
             +P+ +   L+ L  L L NN    NI   L     L  LDL+ N              
Sbjct: 504 GEIPKWI-GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562

Query: 381 ---QINLI------AFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRI 431
                N I                   + NLL F   +     L +       N++    
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ--LNRLSTRNPCNITSRVY 620

Query: 432 SSLFDDWISSMTSLKELDLRHNNFS-FIPD---QLDSIVSNKLTLDLSFNQI 479
                    +  S+  LD+ +N  S +IP     +  +      L+L  N I
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI----LNLGHNDI 668

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 98.8 bits (247), Expect = 2e-21
 Identities = 59/316 (18%), Positives = 109/316 (34%), Gaps = 25/316 (7%)

Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
            +L SL+L  N ++         + KL+ L L  N +    P+    + +L  L LD N 
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477

Query: 186 LI-NLTRAIFNNVPNLRSLDISGNNIS-ILPSGVFSDLRKLQTFYANSNRFQ-MFPKDLF 242
           L   +   + N   NL  + +S N ++  +P      L  L     ++N F    P +L 
Sbjct: 478 LTGEIPSGLSNC-TNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAELG 535

Query: 243 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIV 302
            + + L  + ++ +  +   +P+ +F     +    +           +  +        
Sbjct: 536 -DCRSLIWLDLNTNLFN-GTIPAAMFKQSGKIAANFIAGK----RYVYIKNDGMKKECHG 589

Query: 303 LTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE-NI- 360
                +   + S             +            F++   +  L++  N L   I 
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649

Query: 361 TSLVGLSGLNSLDLSWNQLEQINLI--AFDGLSSLNTVDLSHNLLTFDEYQYGYSP--LK 416
             +  +  L  L+L  N +     I      L  LN +DLS N L       G  P  + 
Sbjct: 650 KEIGSMPYLFILNLGHNDI--SGSIPDEVGDLRGLNILDLSSNKLD------GRIPQAMS 701

Query: 417 QCVNLETINLSYNRIS 432
               L  I+LS N +S
Sbjct: 702 ALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.9 bits (242), Expect = 6e-21
 Identities = 61/320 (19%), Positives = 109/320 (34%), Gaps = 49/320 (15%)

Query: 172 NLTSLRILNLDHNQLINLTRAI---FNNVPNLRSLDISGNNIS-ILPSGVFSDLRKLQTF 227
               +  ++L    L     A+     ++  L SL +S ++I+  +    F     L + 
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSL 105

Query: 228 YANSNRFQ-MFPKDL-FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA 285
             + N                 L+ + +S +              L  L  +        
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF-PGKVSGGLKLNSLEVL-------- 156

Query: 286 ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR--DCKKLVKLELQRNKLK-YLPENLFE 342
               DL  NS       ++G     +          C +L  L +  NK+   +      
Sbjct: 157 ----DLSANS-------ISG-----ANVVGWVLSDGCGELKHLAISGNKISGDVD---VS 197

Query: 343 SLKELYTLNLKNNQLE-NITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
               L  L++ +N     I  L   S L  LD+S N+L      A    + L  +++S N
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257

Query: 402 LLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWIS-SMTSLKELDLRHNNFS-FIP 459
                    G  P     +L+ ++L+ N+ +    D++S +  +L  LDL  N+F   +P
Sbjct: 258 QFV------GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

Query: 460 DQLDSIVSNKLTLDLSFNQI 479
               S  S   +L LS N  
Sbjct: 312 PFFGSC-SLLESLALSSNNF 330

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  130 bits (328), Expect = 7e-32
 Identities = 74/329 (22%), Positives = 132/329 (40%), Gaps = 52/329 (15%)

Query: 151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
              VL++G + +  +   +  ++T+   L +  N L +L        P LR+L++SGN +
Sbjct: 41  GNAVLNVGESGLTTLPDCLPAHITT---LVIPDNNLTSLPALP----PELRTLEVSGNQL 93

Query: 211 SILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
           + LP      L +L  F          P  L      L +       + L  LP  L   
Sbjct: 94  TSLPVL-PPGLLELSIFSNPLTHLPALPSGL----CKLWI-----FGNQLTSLPV-LPPG 142

Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 330
           L  L+   + ++ +A LP+      + +  +    + +LTSLP         L +L +  
Sbjct: 143 LQELS---VSDNQLASLPALP----SELCKLWA-YNNQLTSLPMLP----SGLQELSVSD 190

Query: 331 NKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGL 390
           N+L  LP        ELY L   NN+L ++ +L   SGL  L +S N+L  +        
Sbjct: 191 NQLASLP----TLPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLP----VLP 240

Query: 391 SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDL 450
           S L  + +S N LT        S       L ++++  N+++ L  + +  ++S   ++L
Sbjct: 241 SELKELMVSGNRLT--------SLPMLPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNL 291

Query: 451 RHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
             N  S    Q    +++          I
Sbjct: 292 EGNPLSERTLQALREITS---APGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  125 bits (314), Expect = 4e-30
 Identities = 70/338 (20%), Positives = 117/338 (34%), Gaps = 53/338 (15%)

Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
               LN+  + +T L   +      +  L +  N++  +          LR L +  NQL
Sbjct: 41  GNAVLNVGESGLTTLPDCLPA---HITTLVIPDNNLTSLPALP----PELRTLEVSGNQL 93

Query: 187 INLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
            +L       +  L        ++  LPSG       L   +   N+    P  L   ++
Sbjct: 94  TSLPVLP-PGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLTSLP-VLPPGLQ 144

Query: 247 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGH 306
            L V       + L  LP+ L + L  L       + +  LP       + +  + +   
Sbjct: 145 ELSV-----SDNQLASLPA-LPSELCKLW---AYNNQLTSLPMLP----SGLQELSV-SD 190

Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGL 366
            +L SLP+       +L KL    N+L  LP      LKEL    +  N+L ++  L   
Sbjct: 191 NQLASLPTLP----SELYKLWAYNNRLTSLPALP-SGLKELI---VSGNRLTSLPVL--P 240

Query: 367 SGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTF--DEYQYGYSPLKQCVNLETI 424
           S L  L +S N+L  +        S L ++ +  N LT   +        L    +  T+
Sbjct: 241 SELKELMVSGNRLTSLP----MLPSGLLSLSVYRNQLTRLPES-------LIHLSSETTV 289

Query: 425 NLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQL 462
           NL  N +S      +  +TS          F       
Sbjct: 290 NLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASA 327

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  120 bits (302), Expect = 1e-28
 Identities = 66/307 (21%), Positives = 117/307 (38%), Gaps = 49/307 (15%)

Query: 173 LTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN 232
                +LN+  + L  L   +     ++ +L I  NN++ LP+       +L+T   + N
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLPA---HITTLVIPDNNLTSLPAL----PPELRTLEVSGN 91

Query: 233 RFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLF 292
           +    P  L   +  L +         L  LPSG       L  + +  + +  LP    
Sbjct: 92  QLTSLP-VLPPGLLELSIFSNPL--THLPALPSG-------LCKLWIFGNQLTSLPVLP- 140

Query: 293 WNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNL 352
                +  + +    +L SLP+       +L KL    N+L  LP         L  L++
Sbjct: 141 ---PGLQELSV-SDNQLASLPALP----SELCKLWAYNNQLTSLP----MLPSGLQELSV 188

Query: 353 KNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGY 412
            +NQL ++ +L     L  L    N+L  +        S L  + +S N LT        
Sbjct: 189 SDNQLASLPTLPS--ELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLPVLPS- 241

Query: 413 SPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTL 472
                   L+ + +S NR++SL        + L  L +  N  + +P+ L  + S   T+
Sbjct: 242 -------ELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSET-TV 289

Query: 473 DLSFNQI 479
           +L  N +
Sbjct: 290 NLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 88.4 bits (219), Expect = 2e-18
 Identities = 37/191 (19%), Positives = 66/191 (34%), Gaps = 42/191 (21%)

Query: 320 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQL 379
                 L +  + L  LP+ L   +  L    + +N L ++ +L     L +L++S NQL
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLPAHITTLV---IPDNNLTSLPAL--PPELRTLEVSGNQL 93

Query: 380 EQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWI 439
             +  +   GL  L+        L                 L  + +  N+++SL     
Sbjct: 94  TSLP-VLPPGLLELSIFSNPLTHLP-----------ALPSGLCKLWIFGNQLTSLPV--- 138

Query: 440 SSMTSLKELDLRHNNFSFIPDQLDSIVS-----NKLT-----------LDLSFNQI---- 479
                L+EL +  N  + +P     +       N+LT           L +S NQ+    
Sbjct: 139 -LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLP 197

Query: 480 -AIVDLRTLEI 489
               +L  L  
Sbjct: 198 TLPSELYKLWA 208

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 79.6 bits (196), Expect = 1e-15
 Identities = 43/275 (15%), Positives = 94/275 (34%), Gaps = 36/275 (13%)

Query: 104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVA 163
             + +  N+ +T L        P L+ L++  N +  L +   +    L  L   +N + 
Sbjct: 124 CKLWIFGNQ-LTSLPVLP----PGLQELSVSDNQLASLPALPSE----LCKLWAYNNQLT 174

Query: 164 YMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRK 223
                +    + L+ L++  NQL +L          L  L    N ++ LP+        
Sbjct: 175 ----SLPMLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLPA----LPSG 222

Query: 224 LQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS 283
           L+    + NR    P         L+ + +S ++  L  LP    + L  L+   +  + 
Sbjct: 223 LKELIVSGNRLTSLP----VLPSELKELMVSGNR--LTSLPMLP-SGLLSLS---VYRNQ 272

Query: 284 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 343
           +  LP  L  + ++ T + L G+  L+       +  +++         +         +
Sbjct: 273 LTRLPESLI-HLSSETTVNLEGNP-LSERT---LQALREITSAPGYSGPIIRFDMAGASA 327

Query: 344 LKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQ 378
            +E   L+L              +  +   +   +
Sbjct: 328 PRETRALHLAAADWLVPAREGEPAPADRWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.0 bits (166), Expect = 6e-12
 Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 25/161 (15%)

Query: 321 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLE 380
           ++    E  R +   + +           LN+  + L  +   +  + + +L +  N L 
Sbjct: 16  RRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT 74

Query: 381 QINLIAFDGLSSLNTVDLSHNLLTF--DEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
            +          L T+++S N LT                + L   +     + +L    
Sbjct: 75  SLP----ALPPELRTLEVSGNQLTSLPVL-------PPGLLELSIFSNPLTHLPALP--- 120

Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
               + L +L +  N  + +P     +      L +S NQ+
Sbjct: 121 ----SGLCKLWIFGNQLTSLPVLPPGLQE----LSVSDNQL 153

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  121 bits (306), Expect = 4e-31
 Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 3/172 (1%)

Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
           L  NK ++ L    F    +L  L L  N +  L +G+F+ +  L+ L +  N +  +  
Sbjct: 44  LQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI 102

Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
            +F  L +L  L LD NQL +L   +F+++  L  L +  N +  LP GVF  L  L+  
Sbjct: 103 GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162

Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVIL 279
              +N+ +  P+  F ++  L+   +    + LK +P G F +L  L  + L
Sbjct: 163 RLYNNQLKRVPEGAFDKLTELK--TLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  120 bits (303), Expect = 1e-30
 Identities = 60/228 (26%), Positives = 91/228 (39%), Gaps = 51/228 (22%)

Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
            + L+L+ N ++ L S  F  + KL++L L  N +  +   IFK L +L  L +  N+L 
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98

Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
            L   +F+ + NL  L +  N +  LP  VF  L KL       N               
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-------------- 144

Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHK 307
                       L+ LP G+F  L  L  + L                 N          
Sbjct: 145 ------------LQSLPKGVFDKLTSLKELRL---------------YNN---------- 167

Query: 308 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
           +L  +P   F    +L  L+L  N+LK +PE  F+SL++L  L L+ N
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  117 bits (294), Expect = 2e-29
 Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 1/160 (0%)

Query: 92  LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
           L    F  L  ++ + L+ NK +  L   IFK    LE+L +  N +  L  GVF  +  
Sbjct: 52  LPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN 110

Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS 211
           L  L L  N +  + P +F +LT L  L+L +N+L +L + +F+ + +L+ L +  N + 
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170

Query: 212 ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVI 251
            +P G F  L +L+T   ++N+ +  P+  F  ++ L+++
Sbjct: 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  108 bits (273), Expect = 1e-26
 Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 8/199 (4%)

Query: 208 NNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGL 267
             +     GV S      +   +S +    P ++ A+ K L +       + L  LPS  
Sbjct: 2   EALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDL-----QSNKLSSLPSKA 56

Query: 268 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 327
           F  L  L  + L ++ +  LP+ +F    N+  + +T   KL +LP  +F     L +L 
Sbjct: 57  FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD-NKLQALPIGVFDQLVNLAELR 115

Query: 328 LQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQINLI 385
           L RN+LK LP  +F+SL +L  L+L  N+L+++   V   L+ L  L L  NQL+++   
Sbjct: 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175

Query: 386 AFDGLSSLNTVDLSHNLLT 404
           AFD L+ L T+ L +N L 
Sbjct: 176 AFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  104 bits (261), Expect = 4e-25
 Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 22/212 (10%)

Query: 274 LNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKL 333
            N+V      +  +PS++     +   + L    KL+SLPS  F    KL  L L  NKL
Sbjct: 18  KNSVDCSSKKLTAIPSNIP---ADTKKLDL-QSNKLSSLPSKAFHRLTKLRLLYLNDNKL 73

Query: 334 KYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQINLIAFDGLS 391
           + LP  +F+ LK L TL + +N+L+ +   V   L  L  L L  NQL+ +    FD L+
Sbjct: 74  QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133

Query: 392 SLNTVDLSHNLLT------FDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSL 445
            L  + L +N L       FD          +  +L+ + L  N++  + +     +T L
Sbjct: 134 KLTYLSLGYNELQSLPKGVFD----------KLTSLKELRLYNNQLKRVPEGAFDKLTEL 183

Query: 446 KELDLRHNNFSFIPDQLDSIVSNKLTLDLSFN 477
           K L L +N    +P+     +     L L  N
Sbjct: 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  102 bits (256), Expect = 2e-24
 Identities = 68/228 (29%), Positives = 102/228 (44%), Gaps = 43/228 (18%)

Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-- 364
           KKLT++PS +  D     KL+LQ NKL  LP   F  L +L  L L +N+L+ + + +  
Sbjct: 26  KKLTAIPSNIPAD---TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK 82

Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT------FDEYQYGYSPLKQC 418
            L  L +L ++ N+L+ + +  FD L +L  + L  N L       FD            
Sbjct: 83  ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD----------SL 132

Query: 419 VNLETINLSYNRISSL----FDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDL 474
             L  ++L YN + SL    FD     +TSLKEL L +N    +P+     ++   TL L
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFD----KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188

Query: 475 SFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCS 522
             NQ+         +   A D  E   M+        L +NP  C C+
Sbjct: 189 DNNQLK-------RVPEGAFDSLEKLKMLQ-------LQENPWDCTCN 222

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 94.7 bits (236), Expect = 9e-22
 Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 1/141 (0%)

Query: 92  LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
           L    F  L  ++ + ++ NK +  L   +F     L  L L  N +  L   VF  + K
Sbjct: 76  LPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134

Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS 211
           L  L LG N++  +   +F  LTSL+ L L +NQL  +    F+ +  L++L +  N + 
Sbjct: 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194

Query: 212 ILPSGVFSDLRKLQTFYANSN 232
            +P G F  L KL+      N
Sbjct: 195 RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 11/83 (13%)

Query: 571 TKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFL 630
            K     C CN +      SV+CSS  LT +P  +P   +       +L L +N ++   
Sbjct: 5   CKKDGGVCSCNNNK----NSVDCSSKKLTAIPSNIPADTK-------KLDLQSNKLSSLP 53

Query: 631 ESPPESYKLITDLDLSYNNISHV 653
                    +  L L+ N +  +
Sbjct: 54  SKAFHRLTKLRLLYLNDNKLQTL 76

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  118 bits (299), Expect = 2e-30
 Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 31/232 (13%)

Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSND-VAYMDPEIFKNLTSLRILNLDHN 184
           P  ++L L    +  + S  F  +P +  + +  +  +  ++   F NL+ +  + + + 
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 185 QLI-NLTRAIFNNVPNLRSLDISGNNISILPSGVF-SDLRKLQTFYANSNRFQMFPKDLF 242
           + +  +       +P L+ L I    + + P                  N +        
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY-------- 142

Query: 243 AEMKYLQVIKISYHKDSLKELPSGLFANLP-LLNTVILGESSIAELPSDLFWNSTNITNI 301
                            +  +P   F  L     T+ L  +    +    F N T +  +
Sbjct: 143 -----------------MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF-NGTKLDAV 184

Query: 302 VLTGHKKLTSLPSTLFRD-CKKLVKLELQRNKLKYLPENLFESLKELYTLNL 352
            L  +K LT +    F         L++ +  +  LP    E LKEL   N 
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  113 bits (286), Expect = 1e-28
 Identities = 48/236 (20%), Positives = 85/236 (36%), Gaps = 32/236 (13%)

Query: 173 LTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN-ISILPSGVFSDLRKLQTFYANS 231
             S + L L    L  +    F+N+PN+  + +S +  +  L S  F +L K+      +
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 232 NRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDL 291
            R                         +L  +       LPLL  + +  + +   P   
Sbjct: 90  TR-------------------------NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLT 124

Query: 292 FWNSTNI-TNIVLTGHKKLTSLPSTLFRD-CKKLVKLELQRNKLKYLPENLFESLKELYT 349
              ST+I   + +T +  +TS+P   F+  C + + L+L  N    +    F   K    
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAV 184

Query: 350 LNLKNNQLENIT--SLVGL-SGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNL 402
              KN  L  I   +  G+ SG + LD+S   +  +     + L  L   +    L
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT-WTL 239

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 98.9 bits (247), Expect = 2e-23
 Identities = 34/196 (17%), Positives = 69/196 (35%), Gaps = 16/196 (8%)

Query: 69  FSKLNITTINTLAFSNSPS----------NVGVLSPPYFDGLHFVKHILLSHNKEITGLH 118
             + ++ TI + AFSN P+           +  L    F  L  V HI + + + +T + 
Sbjct: 38  LIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97

Query: 119 KDIFKGTPQLESLNLRGNSITELYSGVF-QYVPKLQVLDLGSND-VAYMDPEIFKNLTS- 175
            D  K  P L+ L +    +                +L++  N  +  +    F+ L + 
Sbjct: 98  PDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157

Query: 176 LRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN-ISILPSGVFSDLR-KLQTFYANSNR 233
              L L +N   ++    FN    L ++ ++ N  ++++    F  +         +   
Sbjct: 158 TLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216

Query: 234 FQMFPKDLFAEMKYLQ 249
               P      +K L 
Sbjct: 217 VTALPSKGLEHLKELI 232

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 90.4 bits (225), Expect = 1e-20
 Identities = 41/199 (20%), Positives = 84/199 (42%), Gaps = 13/199 (6%)

Query: 260 LKELPSGLFANLPLLNTVILGES-SIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
           L+ +PS  F+NLP ++ + +    ++ +L S  F+N + +T+I +   + LT +     +
Sbjct: 43  LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102

Query: 319 DCKKLVKLELQRNKLKYLPE-NLFESLKELYTLNL-KNNQLENI--TSLVGLSG-LNSLD 373
           +   L  L +    LK  P+     S    + L +  N  + +I   +  GL     +L 
Sbjct: 103 ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK 162

Query: 374 LSWNQLEQINLIAFDGLSSLNTVDLSHN--LLTFDEYQYGYSPLKQCVNLETINLSYNRI 431
           L  N    +   AF+G   L+ V L+ N  L   D+    +  +        +++S   +
Sbjct: 163 LYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDA--FGGVYS--GPSLLDVSQTSV 217

Query: 432 SSLFDDWISSMTSLKELDL 450
           ++L    +  +  L   + 
Sbjct: 218 TALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 90.1 bits (224), Expect = 2e-20
 Identities = 47/228 (20%), Positives = 86/228 (37%), Gaps = 39/228 (17%)

Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
            ++ +PS      P   T+ L E+ +  +PS  F N  NI+ I ++    L  L S  F 
Sbjct: 22  DIQRIPSLP----PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY 77

Query: 319 DCKKLVKLELQRNK-LKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNS---LDL 374
           +  K+  +E++  + L Y+  +  + L  L  L + N  L+    L  +   +    L++
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI 137

Query: 375 SWN-QLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISS 433
           + N  +  I + AF GL +                              T+ L  N  +S
Sbjct: 138 TDNPYMTSIPVNAFQGLCNE---------------------------TLTLKLYNNGFTS 170

Query: 434 LFDDWISSMTSLKELDLRHNNF--SFIPDQLDSIVSNKLTLDLSFNQI 479
           +   +  + T L  + L  N +      D    + S    LD+S   +
Sbjct: 171 V-QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  122 bits (307), Expect = 2e-30
 Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 5/172 (2%)

Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSG-VFQYVPKLQVLDLGSNDVAYMDPE 168
             +++  + + +   T     L+L  N+++ L +      +  L  L L  N + ++  E
Sbjct: 26  SKQQLPNVPQSLPSYT---ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE 82

Query: 169 IFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFY 228
            F  + +LR L+L  N L  L   +F+++  L  L +  N+I ++    F D+ +LQ  Y
Sbjct: 83  AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142

Query: 229 ANSNRFQMFPKDLFAEMKYLQVIKISY-HKDSLKELPSGLFANLPLLNTVIL 279
            + N+   FP +L  +   L  + +     + LK+LP      LP      L
Sbjct: 143 LSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  118 bits (297), Expect = 4e-29
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 5/153 (3%)

Query: 108 LSHNKEITGLHKDI-FKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD 166
           LSHN  ++ L  +        L SL L  N +  + S  F  VP L+ LDL SN +  +D
Sbjct: 46  LSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD 104

Query: 167 PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSD---LRK 223
             +F +L +L +L L +N ++ + R  F ++  L+ L +S N IS  P  +  D   L K
Sbjct: 105 EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK 164

Query: 224 LQTFYANSNRFQMFPKDLFAEMKYLQVIKISYH 256
           L     +SN+ +  P     ++       +  H
Sbjct: 165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  111 bits (279), Expect = 9e-27
 Identities = 60/308 (19%), Positives = 97/308 (31%), Gaps = 79/308 (25%)

Query: 300 NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYL-PENLFESLKELYTLNLKNNQLE 358
           NI+    ++L ++P +L         L+L  N L  L  E     L  L++L L +N L 
Sbjct: 21  NILSCSKQQLPNVPQSLPSY---TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77

Query: 359 NITSLV--GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT------FDEYQY 410
            I+S     +  L  LDLS N L  ++   F  L +L  + L +N +       F+    
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE---- 133

Query: 411 GYSPLKQCVNLETINLSYNRISSL----FDDWISSMTSLKELDLRHNNFSFIPDQLDSIV 466
                     L+ + LS N+IS        D  + +  L  LDL  N    +P      +
Sbjct: 134 ------DMAQLQKLYLSQNQISRFPVELIKDG-NKLPKLMLLDLSSNKLKKLPLTDLQKL 186

Query: 467 SNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDL 526
              +   L                                     L++NP+ C+C  Y L
Sbjct: 187 PAWVKNGLY------------------------------------LHNNPLECDCKLYQL 210

Query: 527 IRFVSKKMTKTVYQMLELVT-------------DNLECFGNAGVGINSVRPENLTCDTKP 573
                 +   +V    E +              D   C         +   + LT     
Sbjct: 211 FSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAWEAHLGDTLTI---R 267

Query: 574 CPARCYCN 581
           C  +    
Sbjct: 268 CDTKQQGM 275

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  107 bits (269), Expect = 2e-25
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 6/144 (4%)

Query: 97  FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
              L  +  +LLSHN  +  +  + F   P L  L+L  N +  L   +F  +  L+VL 
Sbjct: 60  PTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118

Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNV---PNLRSLDISGNNISIL 213
           L +N +  +D   F+++  L+ L L  NQ+      +  +    P L  LD+S N +  L
Sbjct: 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178

Query: 214 PSGVFSDLRKL--QTFYANSNRFQ 235
           P      L        Y ++N  +
Sbjct: 179 PLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 97.2 bits (242), Expect = 6e-22
 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 14/180 (7%)

Query: 230 NSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGL-FANLPLLNTVILGESSIAELP 288
           +  +    P+ L +    L +       ++L  L +      L  L++++L  + +  + 
Sbjct: 26  SKQQLPNVPQSLPSYTALLDL-----SHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80

Query: 289 SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 348
           S+ F    N+  + L+    L +L   LF D + L  L L  N +  +  N FE + +L 
Sbjct: 81  SEAFVPVPNLRYLDLS-SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139

Query: 349 TLNLKNNQLENI-----TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSL--NTVDLSHN 401
            L L  NQ+             L  L  LDLS N+L+++ L     L +   N + L +N
Sbjct: 140 KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.4 bits (162), Expect = 7e-12
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 73  NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
           ++  I++ AF   P+         ++  L    F  L  ++ +LL +N  I  + ++ F+
Sbjct: 75  HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFE 133

Query: 124 GTPQLESLNLRGNSITELYSGVFQYV---PKLQVLDLGSNDVAYMDPEIFKNLTSL--RI 178
              QL+ L L  N I+     + +     PKL +LDL SN +  +     + L +     
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

Query: 179 LNLDHNQL 186
           L L +N L
Sbjct: 194 LYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 16/87 (18%)

Query: 570 DTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHF 629
               CPA C C  +       ++CS   L ++P  LP            L L +N+++  
Sbjct: 8   SVVSCPANCLCASN------ILSCSKQQLPNVPQSLPSYTA-------LLDLSHNNLSR- 53

Query: 630 LESPPESYKLI--TDLDLSYNNISHVD 654
           L +     +L     L LS+N+++ + 
Sbjct: 54  LRAEWTPTRLTNLHSLLLSHNHLNFIS 80

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  120 bits (303), Expect = 3e-29
 Identities = 74/420 (17%), Positives = 132/420 (31%), Gaps = 63/420 (15%)

Query: 61  PDENFISLF-SKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHK 119
           PD+NF S   +   +   +T++     +               +  +   ++  IT +  
Sbjct: 16  PDDNFASEVAAAFEMQATDTISEEQLAT---------------LTSLDCHNSS-ITDM-- 57

Query: 120 DIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRIL 179
              +    L  L    N+IT L          L  L   SN +  +D      LT L  L
Sbjct: 58  TGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYL 111

Query: 180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPK 239
           N D N+L  L     +  P L  L+ + N ++ +     S   +L     + N+      
Sbjct: 112 NCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKLD 165

Query: 240 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNIT 299
                   L  +  S++K  + EL     +   LLN +    ++I +L       +  +T
Sbjct: 166 --VTPQTQLTTLDCSFNK--ITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLT 215

Query: 300 NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 359
            +      KLT +         +L   +   N L  L  +    L  L+        L  
Sbjct: 216 FLDC-SSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLH---CIQTDLLE 268

Query: 360 ITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCV 419
           I  L   + L           +I  +     + L  +D     +T          L Q  
Sbjct: 269 I-DLTHNTQLIYFQA--EGCRKIKELDVTHNTQLYLLDCQAAGIT-------ELDLSQNP 318

Query: 420 NLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
            L  + L+   ++ L    +S  T LK L   + +           +        +  Q 
Sbjct: 319 KLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  114 bits (286), Expect = 5e-27
 Identities = 63/361 (17%), Positives = 115/361 (31%), Gaps = 43/361 (11%)

Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
             S       +    +   + +  L  LD  ++ +  M     + LT L  L    N + 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNIT 77

Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
            L     +   NL  L    N ++ L     + L KL     ++N+         ++   
Sbjct: 78  TLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD---VSQNPL 128

Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHK 307
           L  +  + +   L E+     ++   L  +    +             T +T +      
Sbjct: 129 LTYLNCARNT--LTEID---VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDC-SFN 180

Query: 308 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLS 367
           K+T L        K L +L    N +  L         +L  L+  +N+L  I  +  L+
Sbjct: 181 KITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEI-DVTPLT 233

Query: 368 GLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLS 427
            L   D S N L +++      LS L T+      L           L     L      
Sbjct: 234 QLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLL-------EIDLTHNTQLIYFQAE 283

Query: 428 YNRISSLFDDWISSMTSLKELDLRHNNFSFIP-DQLDSIVSNKLTLDLSFNQIAIVDLRT 486
             R     D  ++  T L  LD +    + +   Q   +V     L L+  ++  +D+  
Sbjct: 284 GCRKIKELD--VTHNTQLYLLDCQAAGITELDLSQNPKLV----YLYLNNTELTELDVSH 337

Query: 487 L 487
            
Sbjct: 338 N 338

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  103 bits (260), Expect = 1e-23
 Identities = 54/323 (16%), Positives = 101/323 (31%), Gaps = 34/323 (10%)

Query: 122 FKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNL 181
                QL  L+   N              +L  LD   N +  +D         L  LN 
Sbjct: 144 VSHNTQLTELDCHLNKKITK--LDVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNC 198

Query: 182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDL 241
           D N +  L     N    L  LD S N ++ +     + L +L  F  + N         
Sbjct: 199 DTNNITKLD---LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVST 252

Query: 242 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 301
            +++  L        +  L E+       L              ++      ++T +  +
Sbjct: 253 LSKLTTLHC-----IQTDLLEIDLTHNTQLIYFQA-----EGCRKIKELDVTHNTQLYLL 302

Query: 302 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 361
                  +T L         KLV L L   +L  L         +L +L+  N  +++ +
Sbjct: 303 DC-QAAGITELD---LSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFS 355

Query: 362 SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNL 421
           S+  +  LN+   +  Q   I +      ++  T+ +S +LL          P     + 
Sbjct: 356 SVGKIPALNNNFEAEGQT--ITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPG----DG 409

Query: 422 ETINLSYNRISSLFDDWISSMTS 444
              + + N I+       +   +
Sbjct: 410 GVYDQATNTITWENLSTDNPAVT 432

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 97.5 bits (243), Expect = 1e-21
 Identities = 60/334 (17%), Positives = 100/334 (29%), Gaps = 51/334 (15%)

Query: 171 KNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYAN 230
            N  S      +      ++      +  L SLD   ++I+ +       L  L      
Sbjct: 18  DNFASEVAAAFEMQATDTIS---EEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICT 72

Query: 231 SNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP-- 288
           SN          ++   L  +    +K  L  L       L  L  +    + + +L   
Sbjct: 73  SNNITTLD---LSQNTNLTYLACDSNK--LTNLD---VTPLTKLTYLNCDTNKLTKLDVS 124

Query: 289 -----SDLFWNSTNITNIVLTGHKKLTSL--------PSTLFRDCKKLVKLELQRNKLKY 335
                + L      +T I ++ + +LT L                 +L  L+   NK+  
Sbjct: 125 QNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE 184

Query: 336 LPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNT 395
           L        K L  LN   N +  +  L     L  LD S N+L +I+      L+ L  
Sbjct: 185 LD---VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTY 237

Query: 396 VDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
            D S N LT          +     L T++     +  +    ++  T L          
Sbjct: 238 FDCSVNPLT-------ELDVSTLSKLTTLHCIQTDLLEID---LTHNTQLIYFQAEGCRK 287

Query: 456 SFIPDQLDSIVSNKL--TLDLSFNQIAIVDLRTL 487
               D    +  N     LD     I  +DL   
Sbjct: 288 IKELD----VTHNTQLYLLDCQAAGITELDLSQN 317

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  114 bits (288), Expect = 2e-28
 Identities = 47/209 (22%), Positives = 73/209 (34%), Gaps = 10/209 (4%)

Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYA 229
              + S   +N D   L  L   +     +   L +S N +            +L     
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 230 NSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS 289
           +          +   +  L  + +S+++  L+ LP  L   LP L  + +  + +  LP 
Sbjct: 63  DRAELTKLQ--VDGTLPVLGTLDLSHNQ--LQSLPL-LGQTLPALTVLDVSFNRLTSLPL 117

Query: 290 DLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYT 349
                   +  + L    +L +LP  L     KL KL L  N L  LP  L   L+ L T
Sbjct: 118 GALRGLGELQELYL-KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

Query: 350 LNLKNNQLENI-TSLVGLSGLNSLDLSWN 377
           L L+ N L  I     G   L    L  N
Sbjct: 177 LLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  114 bits (286), Expect = 3e-28
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 6/166 (3%)

Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
           LS N  +            +L  LNL    +T+L   V   +P L  LDL  N +  + P
Sbjct: 38  LSENL-LYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSL-P 93

Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
            + + L +L +L++  N+L +L       +  L+ L + GN +  LP G+ +   KL+  
Sbjct: 94  LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153

Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPL 273
              +N     P  L   ++ L    +   ++SL  +P G F +  L
Sbjct: 154 SLANNNLTELPAGLLNGLENLD--TLLLQENSLYTIPKGFFGSHLL 197

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  107 bits (270), Expect = 4e-26
 Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 4/151 (2%)

Query: 92  LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
            S         +  + L   + +T L   +    P L +L+L  N +  L   + Q +P 
Sbjct: 46  FSLATLMPYTRLTQLNLDRAE-LTKL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPA 101

Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS 211
           L VLD+  N +  +     + L  L+ L L  N+L  L   +    P L  L ++ NN++
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161

Query: 212 ILPSGVFSDLRKLQTFYANSNRFQMFPKDLF 242
            LP+G+ + L  L T     N     PK  F
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  106 bits (267), Expect = 1e-25
 Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 23/204 (11%)

Query: 264 PSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL 323
           P    + +     V   + ++  LP DL     + T + L+ +  L +          +L
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSEN-LLYTFSLATLMPYTRL 57

Query: 324 VKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL-VGLSGLNSLDLSWNQLEQI 382
            +L L R +L  L   +  +L  L TL+L +NQL+++  L   L  L  LD+S+N+L  +
Sbjct: 58  TQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 383 NLIAFDGLSSLNTVDLSHNLLT------FDEYQYGYSPLKQCVNLETINLSYNRISSLFD 436
            L A  GL  L  + L  N L                P      LE ++L+ N ++ L  
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLT-------PT---PKLEKLSLANNNLTELPA 165

Query: 437 DWISSMTSLKELDLRHNNFSFIPD 460
             ++ + +L  L L+ N+   IP 
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPK 189

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  106 bits (266), Expect = 2e-25
 Identities = 66/282 (23%), Positives = 97/282 (34%), Gaps = 47/282 (16%)

Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGL 366
           + LT+LP  L +D      L L  N L             L  LNL   +L  +     L
Sbjct: 20  RNLTALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL 76

Query: 367 SGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT------FDEYQYGYSPLKQCVN 420
             L +LDLS NQL+ + L     L +L  +D+S N LT                      
Sbjct: 77  PVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALR----------GLGE 125

Query: 421 LETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIA 480
           L+ + L  N + +L    ++    L++L L +NN + +P  L + + N  TL L  N + 
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185

Query: 481 IV-----DLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMT 535
            +         L                        L+ NP  CNC      R++     
Sbjct: 186 TIPKGFFGSHLLP--------------------FAFLHGNPWLCNCEILYFRRWLQDNAE 225

Query: 536 KTVYQMLELVTDNLECFGNAGVGI-NSVRPENLTCDTKPCPA 576
             VY   + V         A V   NS +        K CP 
Sbjct: 226 N-VYVWKQGVDVKAMTSNVASVQCDNSDKFPVYKYPGKGCPT 266

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  100 bits (250), Expect = 2e-23
 Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 10/167 (5%)

Query: 73  NITTINTLAFSNSP-------SNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGT 125
            + T +                   +        L  +  + LSHN+ +  L   + +  
Sbjct: 42  LLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQ-LQSLP-LLGQTL 99

Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
           P L  L++  N +T L  G  + + +LQ L L  N++  + P +      L  L+L +N 
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159

Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN 232
           L  L   + N + NL +L +  N++  +P G F     L   + + N
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 15/94 (15%)

Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESP 633
           C            S + VNC   +LT +P  LP            L L  N +  F  + 
Sbjct: 4   CEVSKVA------SHLEVNCDKRNLTALPPDLPKDTT-------ILHLSENLLYTFSLAT 50

Query: 634 PESYKLITDLDLSYNNISH--VDTMYPYLNHLEL 665
              Y  +T L+L    ++   VD   P L  L+L
Sbjct: 51  LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  109 bits (275), Expect = 2e-26
 Identities = 56/349 (16%), Positives = 112/349 (32%), Gaps = 56/349 (16%)

Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
            E+L  +G++    Y  V     +    D               N  + +I       L 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRALK 69

Query: 188 NLTRAIFN-NVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
                + +   P   +L++    +   P   F  L  LQ    ++               
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAA-------------- 114

Query: 247 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGH 306
                        L ELP  +      L T+ L  + +  LP+ +  +   +  + +   
Sbjct: 115 ------------GLMELPDTM-QQFAGLETLTLARNPLRALPASI-ASLNRLRELSIRAC 160

Query: 307 KKLTSLPSTL--------FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 358
            +LT LP  L         +    L  L L+   ++ LP +   +L+ L +L ++N+ L 
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLS 219

Query: 359 NI-TSLVGLSGLNSLDLSW-NQLEQINLIAFDGLSSLNTVDLSH-NLLTF--DEYQYGYS 413
            +  ++  L  L  LDL     L       F G + L  + L   + L     +      
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTLPLD------ 272

Query: 414 PLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQL 462
            + +   LE ++L      S     I+ + +   + +  +  + +    
Sbjct: 273 -IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.1 bits (219), Expect = 4e-19
 Identities = 50/292 (17%), Positives = 102/292 (34%), Gaps = 23/292 (7%)

Query: 63  ENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIF 122
            +     +  N   I T       +   +L      G      + L     +       F
Sbjct: 46  WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGR---VALELRSVP-LPQFPDQAF 101

Query: 123 KGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD 182
           + +  L+ + +    + EL     Q    L+ L L  N +  + P    +L  LR L++ 
Sbjct: 102 RLS-HLQHMTIDAAGLMEL-PDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRELSIR 158

Query: 183 H-NQLINLTRAIFNNVP--------NLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
              +L  L   + +           NL+SL +    I  LP+   ++L+ L++    ++ 
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSP 217

Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVIL-GESSIAELPSDLF 292
                  +   +  L+ + +     +L+  P   F     L  +IL   S++  LP D+ 
Sbjct: 218 LSALGPAI-HHLPKLEELDLRGCT-ALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDI- 273

Query: 293 WNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESL 344
              T +  + L G   L+ LPS +         + +  +    L ++   + 
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSLI-AQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 84.2 bits (209), Expect = 8e-18
 Identities = 47/317 (14%), Positives = 97/317 (30%), Gaps = 38/317 (11%)

Query: 167 PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQT 226
                + +    L    +      R   + +   +    +  N         ++    Q 
Sbjct: 5   HHHHHHSSGRENLYFQGS---TALRPYHDVLSQWQRHYNADRNRWHSAW-RQANSNNPQI 60

Query: 227 FYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE 286
                   +     L  +      + +      L + P   F  L  L  + +  + + E
Sbjct: 61  ETRTGRALKATADLL-EDATQPGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAAGLME 118

Query: 287 LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR-NKLKYLPENLFESLK 345
           LP  +      +  + L     L +LP+++     +L +L ++   +L  LPE L     
Sbjct: 119 LPDTM-QQFAGLETLTL-ARNPLRALPASI-ASLNRLRELSIRACPELTELPEPL----- 170

Query: 346 ELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTF 405
                       +      GL  L SL L W  +  +   +   L +L ++ + ++ L+ 
Sbjct: 171 ---------ASTDASGEHQGLVNLQSLRLEWTGIRSLPA-SIANLQNLKSLKIRNSPLSA 220

Query: 406 --DEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRH-NNFSFIPDQL 462
                      +     LE ++L        +         LK L L+  +N   +P  +
Sbjct: 221 LGPA-------IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273

Query: 463 DSIVSNKLT-LDLSFNQ 478
             +    L  LDL    
Sbjct: 274 HRLTQ--LEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 43/229 (18%), Positives = 82/229 (35%), Gaps = 18/229 (7%)

Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
           +L+     L +               A   ++      N   I     + L +    L  
Sbjct: 24  ALRPYHDVL-SQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTGRALKATADLLED 77

Query: 319 DC-KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI-TSLVGLSGLNSLDLSW 376
                 V LEL+   L   P+  F  L  L  + +    L  +  ++   +GL +L L+ 
Sbjct: 78  ATQPGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLAR 136

Query: 377 NQLEQINLIAFDGLSSLNTVDLSHN--LLTFDE---YQYGYSPLKQCVNLETINLSYNRI 431
           N L  +   +   L+ L  + +     L    E           +  VNL+++ L +  I
Sbjct: 137 NPLRAL-PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195

Query: 432 SSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLS-FNQI 479
            SL    I+++ +LK L +R++  S +   +  +   +  LDL     +
Sbjct: 196 RSLPAS-IANLQNLKSLKIRNSPLSALGPAIHHLPKLE-ELDLRGCTAL 242

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 18/161 (11%), Positives = 39/161 (24%), Gaps = 33/161 (20%)

Query: 320 CKKLVKLELQR-NKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQ 378
                 L  Q    L+   + L    +  Y  +   N+  +       +       +   
Sbjct: 11  SSGRENLYFQGSTALRPYHDVL-SQWQRHYNAD--RNRWHSAWRQANSNNPQIETRTGRA 67

Query: 379 LEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW 438
           L+       D L                                 + L    +     D 
Sbjct: 68  LKAT----ADLLEDATQP-----------------------GRVALELRSVPLPQF-PDQ 99

Query: 439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
              ++ L+ + +       +PD +      + TL L+ N +
Sbjct: 100 AFRLSHLQHMTIDAAGLMELPDTMQQFAGLE-TLTLARNPL 139

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  106 bits (266), Expect = 3e-26
 Identities = 34/126 (26%), Positives = 63/126 (50%)

Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
             +  + L  N+I  +  G F    KL+ +DL +N ++ + P+ F+ L SL  L L  N+
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEM 245
           +  L +++F  + +L+ L ++ N I+ L    F DL  L       N+ Q   K  F+ +
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 246 KYLQVI 251
           + +Q +
Sbjct: 152 RAIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  105 bits (264), Expect = 6e-26
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 1/130 (0%)

Query: 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDV 162
           +  I L  N  I  +    F    +L  ++L  N I+EL    FQ +  L  L L  N +
Sbjct: 34  ITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92

Query: 163 AYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLR 222
             +   +F+ L SL++L L+ N++  L    F ++ NL  L +  N +  +  G FS LR
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 223 KLQTFYANSN 232
            +QT +   N
Sbjct: 153 AIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 89.7 bits (223), Expect = 2e-20
 Identities = 40/182 (21%), Positives = 64/182 (35%), Gaps = 51/182 (28%)

Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
            ++  + L+ N +  +    F+    LR +D+S N IS L    F  LR L +     N+
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFW 293
                                     + ELP  LF  L  L  ++L              
Sbjct: 92  --------------------------ITELPKSLFEGLFSLQLLLL-------------- 111

Query: 294 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 353
            + N          K+  L    F+D   L  L L  NKL+ + +  F  L+ + T++L 
Sbjct: 112 -NAN----------KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160

Query: 354 NN 355
            N
Sbjct: 161 QN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 87.4 bits (217), Expect = 1e-19
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 6/132 (4%)

Query: 275 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 334
           N V      + E+P++L      IT I L     +  +P   F   KKL +++L  N++ 
Sbjct: 14  NIVDCRGKGLTEIPTNL---PETITEIRL-EQNTIKVIPPGAFSPYKKLRRIDLSNNQIS 69

Query: 335 YLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQINLIAFDGLSS 392
            L  + F+ L+ L +L L  N++  +   +  GL  L  L L+ N++  + + AF  L +
Sbjct: 70  ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129

Query: 393 LNTVDLSHNLLT 404
           LN + L  N L 
Sbjct: 130 LNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 68.1 bits (167), Expect = 5e-13
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 25/117 (21%)

Query: 92  LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
           L+P  F GL                           L SL L GN ITEL   +F+ +  
Sbjct: 71  LAPDAFQGL-------------------------RSLNSLVLYGNKITELPKSLFEGLFS 105

Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
           LQ+L L +N +  +  + F++L +L +L+L  N+L  + +  F+ +  ++++ ++ N
Sbjct: 106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 43/220 (19%), Positives = 63/220 (28%), Gaps = 68/220 (30%)

Query: 372 LDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRI 431
           + L  N ++ I   AF                                 L  I+LS N+I
Sbjct: 37  IRLEQNTIKVIPPGAFSPYK----------------------------KLRRIDLSNNQI 68

Query: 432 SSLFDDWISSMTSLKELDLRHNNFSFIPDQL-DSIVSNKLT-LDLSFNQI------AIVD 483
           S L  D    + SL  L L  N  + +P  L + +    L  L L+ N+I      A  D
Sbjct: 69  SELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF--SLQLLLLNANKINCLRVDAFQD 126

Query: 484 LRTLE-----------IKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSK 532
           L  L            I      P      +        L  NP  C+C    L  ++  
Sbjct: 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH-------LAQNPFICDCHLKWLADYLHT 179

Query: 533 KMTKTVYQMLELVTDNLECFG---NAGVGINSVRPENLTC 569
              +         T    C      A   I  ++ +   C
Sbjct: 180 NPIE---------TSGARCTSPRRLANKRIGQIKSKKFRC 210

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 13/83 (15%)

Query: 571 TKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFL 630
           +  CPA C C+ +       V+C    LT +P  LP T         ++ L  N+I    
Sbjct: 2   SLHCPAACTCSNN------IVDCRGKGLTEIPTNLPETIT-------EIRLEQNTIKVIP 48

Query: 631 ESPPESYKLITDLDLSYNNISHV 653
                 YK +  +DLS N IS +
Sbjct: 49  PGAFSPYKKLRRIDLSNNQISEL 71

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  102 bits (255), Expect = 1e-24
 Identities = 36/125 (28%), Positives = 60/125 (48%)

Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
           L++N+        IFK  PQL  +N   N IT++  G F+    +  + L SN +  +  
Sbjct: 39  LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH 98

Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
           ++FK L SL+ L L  N++  +    F  + ++R L +  N I+ +  G F  L  L T 
Sbjct: 99  KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158

Query: 228 YANSN 232
              +N
Sbjct: 159 NLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 97.8 bits (244), Expect = 2e-23
 Identities = 25/124 (20%), Positives = 57/124 (45%), Gaps = 1/124 (0%)

Query: 129 ESLNLRGNSITELYS-GVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
             L L  N  T L + G+F+ +P+L+ ++  +N +  ++   F+  + +  + L  N+L 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
           N+   +F  + +L++L +  N I+ + +  F  L  ++      N+        F  +  
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154

Query: 248 LQVI 251
           L  +
Sbjct: 155 LSTL 158

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 90.1 bits (224), Expect = 1e-20
 Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 1/112 (0%)

Query: 97  FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
           F  L  ++ I  S+NK IT + +  F+G   +  + L  N +  +   +F+ +  L+ L 
Sbjct: 53  FKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111

Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
           L SN +  +  + F  L+S+R+L+L  NQ+  +    F+ + +L +L++  N
Sbjct: 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 86.2 bits (214), Expect = 2e-19
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 22/159 (13%)

Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN-LFESLKELYTLNLKNNQLENITSLV 364
           ++KL  +P  + +      +L L  N+   L    +F+ L +L  +N  NN++ +I    
Sbjct: 20  NQKLNKIPEHIPQY---TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA 76

Query: 365 --GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT------FDEYQYGYSPLK 416
             G SG+N + L+ N+LE +    F GL SL T+ L  N +T      F           
Sbjct: 77  FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS------- 129

Query: 417 QCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
              ++  ++L  N+I+++      ++ SL  L+L  N F
Sbjct: 130 ---SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 85.9 bits (213), Expect = 4e-19
 Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 23/164 (14%)

Query: 275 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST-LFRDCKKLVKLELQRNKL 333
            TV      + ++P  +         + L  + + T L +T +F+   +L K+    NK+
Sbjct: 14  TTVDCSNQKLNKIPEHI---PQYTAELRL-NNNEFTVLEATGIFKKLPQLRKINFSNNKI 69

Query: 334 KYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQLEQINLIAFDGLS 391
             + E  FE    +  + L +N+LEN+   +  GL  L +L L  N++  +   +F GLS
Sbjct: 70  TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS 129

Query: 392 SLNTVDLSHNLLT------FDEYQYGYSPLKQCVNLETINLSYN 429
           S+  + L  N +T      FD        L    +L T+NL  N
Sbjct: 130 SVRLLSLYDNQITTVAPGAFD-------TLH---SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 85.5 bits (212), Expect = 5e-19
 Identities = 37/185 (20%), Positives = 62/185 (33%), Gaps = 52/185 (28%)

Query: 174 TSLRILNLDHNQLINLT-RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN 232
                L L++N+   L    IF  +P LR ++ S N I+ +  G F     +      SN
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 233 RFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLF 292
           R                          L+ +   +F  L  L T++L             
Sbjct: 92  R--------------------------LENVQHKMFKGLESLKTLML------------- 112

Query: 293 WNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNL 352
              +N          ++T + +  F     +  L L  N++  +    F++L  L TLNL
Sbjct: 113 --RSN----------RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160

Query: 353 KNNQL 357
             N  
Sbjct: 161 LANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 23/138 (16%)

Query: 264 PSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL 323
            +G+F  LP L  +    + I ++    F  ++ +  I+LT   +L ++   +F+  + L
Sbjct: 49  ATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT-SNRLENVQHKMFKGLESL 107

Query: 324 VKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQIN 383
             L L+ N++  +  + F  L  +  L+L +NQ+  +                       
Sbjct: 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG-------------------- 147

Query: 384 LIAFDGLSSLNTVDLSHN 401
             AFD L SL+T++L  N
Sbjct: 148 --AFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 70.1 bits (172), Expect = 8e-14
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 1/95 (1%)

Query: 92  LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
           +    F+G   V  ILL+ N+ +  +   +FKG   L++L LR N IT + +  F  +  
Sbjct: 72  IEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130

Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
           +++L L  N +  + P  F  L SL  LNL  N  
Sbjct: 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 574 CPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESP 633
           CP +C C  +      +V+CS+  L  +P+++P    +       L L+NN       + 
Sbjct: 5   CPEKCRCEGT------TVDCSNQKLNKIPEHIPQYTAE-------LRLNNNEFTVLEATG 51

Query: 634 P-ESYKLITDLDLSYNNISHV 653
             +    +  ++ S N I+ +
Sbjct: 52  IFKKLPQLRKINFSNNKITDI 72

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 99.7 bits (249), Expect = 2e-23
 Identities = 55/228 (24%), Positives = 105/228 (46%), Gaps = 33/228 (14%)

Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
              NL+  S+T+  +     +  +  +   ++D+  +     + L ++R L L  N+L +
Sbjct: 22  IKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHD 77

Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYL 248
           +  +    + NL  L ++GN +  LP+GVF  L  L+      N+ Q  P  +F ++  L
Sbjct: 78  I--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135

Query: 249 QVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKK 308
             + +++++  L+ LP G+F  L                        TN+T + L  + +
Sbjct: 136 TYLNLAHNQ--LQSLPKGVFDKL------------------------TNLTELDL-SYNQ 168

Query: 309 LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 356
           L SLP  +F    +L  L L +N+LK +P+ +F+ L  L  + L +N 
Sbjct: 169 LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 93.5 bits (233), Expect = 2e-21
 Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 3/165 (1%)

Query: 87  SNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVF 146
           +N  + S      L  V+++ L  NK +  +     K    L  L L GN +  L +GVF
Sbjct: 49  NNSDIKSVQGIQYLPNVRYLALGGNK-LHDI--SALKELTNLTYLILTGNQLQSLPNGVF 105

Query: 147 QYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDIS 206
             +  L+ L L  N +  +   +F  LT+L  LNL HNQL +L + +F+ + NL  LD+S
Sbjct: 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165

Query: 207 GNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVI 251
            N +  LP GVF  L +L+      N+ +  P  +F  +  LQ I
Sbjct: 166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 84.7 bits (210), Expect = 2e-18
 Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 37/198 (18%)

Query: 295 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 354
                   L   K +T   +    +   + ++    + +K +     + L  +  L L  
Sbjct: 18  FAETIKANLKK-KSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGG 72

Query: 355 NQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT------FDEY 408
           N+L +I++L  L+ L  L L+ NQL+ +    FD L++L  + L  N L       FD  
Sbjct: 73  NKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD-- 130

Query: 409 QYGYSPLKQCVNLETINLSYNRISSL----FDDWISSMTSLKELDLRHNNFSFIPDQLDS 464
                   +  NL  +NL++N++ SL    FD     +T+L ELDL +N    +P+    
Sbjct: 131 --------KLTNLTYLNLAHNQLQSLPKGVFD----KLTNLTELDLSYNQLQSLPEG--- 175

Query: 465 IVSNKLT----LDLSFNQ 478
            V +KLT    L L  NQ
Sbjct: 176 -VFDKLTQLKDLRLYQNQ 192

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 84.7 bits (210), Expect = 2e-18
 Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 7/184 (3%)

Query: 49  PFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILL 108
             N++        D   +     L       L   N   ++          L  + +++L
Sbjct: 39  ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALG-GNKLHDISA-----LKELTNLTYLIL 92

Query: 109 SHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPE 168
           + N+ +  L   +F     L+ L L  N +  L  GVF  +  L  L+L  N +  +   
Sbjct: 93  TGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151

Query: 169 IFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFY 228
           +F  LT+L  L+L +NQL +L   +F+ +  L+ L +  N +  +P GVF  L  LQ  +
Sbjct: 152 VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 211

Query: 229 ANSN 232
            + N
Sbjct: 212 LHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 14/205 (6%)

Query: 201 RSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSL 260
            ++ +S     I P   F++  K                    + +   + +I  +   +
Sbjct: 1   ETITVSTPIKQIFPDDAFAETIKA---NLKKKSVTDAV----TQNELNSIDQIIANNSDI 53

Query: 261 KELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC 320
           K +       LP +  + LG + + ++ +      TN+T ++LTG  +L SLP+ +F   
Sbjct: 54  KSVQG--IQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTG-NQLQSLPNGVFDKL 108

Query: 321 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSWNQ 378
             L +L L  N+L+ LP+ +F+ L  L  LNL +NQL+++   V   L+ L  LDLS+NQ
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168

Query: 379 LEQINLIAFDGLSSLNTVDLSHNLL 403
           L+ +    FD L+ L  + L  N L
Sbjct: 169 LQSLPEGVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 81.2 bits (201), Expect = 3e-17
 Identities = 57/214 (26%), Positives = 90/214 (42%), Gaps = 36/214 (16%)

Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
             +  P   FA     N   L + S+ +  +       +I  I+      + S+     +
Sbjct: 9   IKQIFPDDAFAETIKAN---LKKKSVTDAVT--QNELNSIDQIIANN-SDIKSVQG--IQ 60

Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSW 376
               +  L L  NKL  +     + L  L  L L  NQL+++ + V   L+ L  L L  
Sbjct: 61  YLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118

Query: 377 NQLEQINLIAFDGLSSLNTVDLSHNLLT------FDEYQYGYSPLKQCVNLETINLSYNR 430
           NQL+ +    FD L++L  ++L+HN L       FD          +  NL  ++LSYN+
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD----------KLTNLTELDLSYNQ 168

Query: 431 ISSL----FDDWISSMTSLKELDLRHNNFSFIPD 460
           + SL    FD     +T LK+L L  N    +PD
Sbjct: 169 LQSLPEGVFD----KLTQLKDLRLYQNQLKSVPD 198

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 33/173 (19%), Positives = 62/173 (35%), Gaps = 35/173 (20%)

Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGL 366
                 P   F +  K     L++  +          L  +  +   N+ ++++  +  L
Sbjct: 8   PIKQIFPDDAFAETIKA---NLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYL 62

Query: 367 SGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL 426
             +  L L  N+L    + A   L                             NL  + L
Sbjct: 63  PNVRYLALGGNKLHD--ISALKEL----------------------------TNLTYLIL 92

Query: 427 SYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
           + N++ SL +     +T+LKEL L  N    +PD +   ++N   L+L+ NQ+
Sbjct: 93  TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL 145

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 99.0 bits (247), Expect = 2e-23
 Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 1/144 (0%)

Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
           L     +  L    F+G  +L  LNL  N +  L +GVF  + +L  L L +N +A +  
Sbjct: 42  LQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL 100

Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
            +F +LT L  L L  NQL +L   +F+ +  L+ L ++ N +  +P+G F  L  LQT 
Sbjct: 101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160

Query: 228 YANSNRFQMFPKDLFAEMKYLQVI 251
             ++N+ Q  P   F  +  LQ I
Sbjct: 161 SLSTNQLQSVPHGAFDRLGKLQTI 184

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 97.8 bits (244), Expect = 5e-23
 Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 2/151 (1%)

Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
           E L+L+   +  L    F+ + KL  L+L  N +  +   +F +LT L  L L +NQL +
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYL 248
           L   +F+++  L  L + GN +  LPSGVF  L KL+    N+N+ Q  P   F ++  L
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157

Query: 249 QVIKISYHKDSLKELPSGLFANLPLLNTVIL 279
           Q   +S   + L+ +P G F  L  L T+ L
Sbjct: 158 Q--TLSLSTNQLQSVPHGAFDRLGKLQTITL 186

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 97.1 bits (242), Expect = 1e-22
 Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 3/148 (2%)

Query: 256 HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 315
               L  L    F  L  L  + L  + +  L + +F + T +  + L    +L SLP  
Sbjct: 43  QSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN-NQLASLPLG 101

Query: 316 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLD 373
           +F    +L KL L  N+LK LP  +F+ L +L  L L  NQL++I +     L+ L +L 
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161

Query: 374 LSWNQLEQINLIAFDGLSSLNTVDLSHN 401
           LS NQL+ +   AFD L  L T+ L  N
Sbjct: 162 LSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 93.6 bits (233), Expect = 1e-21
 Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 1/141 (0%)

Query: 92  LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
           LS   F GL  +  + L +N+ +  L   +F    +L +L L  N +  L  GVF ++ +
Sbjct: 50  LSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQ 108

Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS 211
           L  L LG N +  +   +F  LT L+ L L+ NQL ++    F+ + NL++L +S N + 
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168

Query: 212 ILPSGVFSDLRKLQTFYANSN 232
            +P G F  L KLQT     N
Sbjct: 169 SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 90.5 bits (225), Expect = 2e-20
 Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 27/183 (14%)

Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
                L+L    L  L+ A F  +  L  L++  N +  L +GVF DL +L T    +N+
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94

Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFW 293
                                     L  LP G+F +L  L+ + LG + +  LPS +F 
Sbjct: 95  --------------------------LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD 128

Query: 294 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 353
             T +  + L    +L S+P+  F     L  L L  N+L+ +P   F+ L +L T+ L 
Sbjct: 129 RLTKLKELRL-NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187

Query: 354 NNQ 356
            NQ
Sbjct: 188 GNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 87.4 bits (217), Expect = 2e-19
 Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 6/148 (4%)

Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
           SL  +PSG+ A+   L+   L  + +A L    F   T +T + L    +L +L + +F 
Sbjct: 25  SLDSVPSGIPADTEKLD---LQSTGLATLSDATFRGLTKLTWLNLDY-NQLQTLSAGVFD 80

Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSW 376
           D  +L  L L  N+L  LP  +F+ L +L  L L  NQL+++ S V   L+ L  L L+ 
Sbjct: 81  DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140

Query: 377 NQLEQINLIAFDGLSSLNTVDLSHNLLT 404
           NQL+ I   AFD L++L T+ LS N L 
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 84.7 bits (210), Expect = 2e-18
 Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 18/156 (11%)

Query: 308 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--G 365
            L +L    FR   KL  L L  N+L+ L   +F+ L EL TL L NNQL ++   V   
Sbjct: 46  GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH 105

Query: 366 LSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT------FDEYQYGYSPLKQCV 419
           L+ L+ L L  NQL+ +    FD L+ L  + L+ N L       FD+            
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL----------T 155

Query: 420 NLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
           NL+T++LS N++ S+       +  L+ + L  N F
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 77/285 (27%), Positives = 105/285 (36%), Gaps = 76/285 (26%)

Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-- 364
           K L S+PS +  D +KL   +LQ   L  L +  F  L +L  LNL  NQL+ +++ V  
Sbjct: 24  KSLDSVPSGIPADTEKL---DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80

Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI 424
            L+ L +L L+ NQL  + L  FD L                              L+ +
Sbjct: 81  DLTELGTLGLANNQLASLPLGVFDHL----------------------------TQLDKL 112

Query: 425 NLSYNRISSL----FDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLT----LDLSF 476
            L  N++ SL    FD     +T LKEL L  N    IP        +KLT    L LS 
Sbjct: 113 YLGGNQLKSLPSGVFD----RLTKLKELRLNTNQLQSIPAG----AFDKLTNLQTLSLST 164

Query: 477 NQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSN--Y--DLIRFVSK 532
           NQ+         +   A D       +        L  N   C+     Y    IR  S 
Sbjct: 165 NQLQ-------SVPHGAFDRLGKLQTIT-------LFGNQFDCSRCEILYLSQWIRENSN 210

Query: 533 KMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKP--CP 575
           K+     Q L    D + C          VR   +T +T    CP
Sbjct: 211 KVKDGTGQNLHESPDGVTCSDG-----KVVR--TVTNETLKYECP 248

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 1/94 (1%)

Query: 92  LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
           L    FD L  +  + L  N+ +  L   +F    +L+ L L  N +  + +G F  +  
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156

Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
           LQ L L +N +  +    F  L  L+ + L  NQ
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  103 bits (257), Expect = 4e-23
 Identities = 47/239 (19%), Positives = 88/239 (36%), Gaps = 35/239 (14%)

Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLF-WNSTNITNIVLTGHKKLTSLPSTLF 317
           ++    +  F+         L   +  E  S L        + + L     L+SLP  L 
Sbjct: 21  TISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL-NRLNLSSLPDNLP 79

Query: 318 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWN 377
               ++  LE+ +N L  LPE        L  L+  +N+L  +  L   + L  LD+  N
Sbjct: 80  ---PQITVLEITQNALISLPE----LPASLEYLDACDNRLSTLPEL--PASLKHLDVDNN 130

Query: 378 QLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDD 437
           QL  +     +  + L  ++  +N LT           +   +LE +++  N+++ L + 
Sbjct: 131 QLTMLP----ELPALLEYINADNNQLT--------MLPELPTSLEVLSVRNNQLTFLPE- 177

Query: 438 WISSMTSLKELDLRHNNFSFIPD---QLDSIVSNKLTLDLSFNQIA-----IVDLRTLE 488
                 SL+ LD+  N    +P    +       ++      N+I      I+ L    
Sbjct: 178 ---LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTC 233

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  102 bits (256), Expect = 5e-23
 Identities = 67/340 (19%), Positives = 105/340 (30%), Gaps = 85/340 (25%)

Query: 130 SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFK-NLTSLRILNLDHNQLIN 188
           S N   N+I+  Y+  F    K +   L   +       + +  +     L L+   L +
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS 73

Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYL 248
           L   +    P +  L+I+ N +  LP    + L  L    A  NR    P+         
Sbjct: 74  LPDNLP---PQITVLEITQNALISLPEL-PASLEYL---DACDNRLSTLPELP------- 119

Query: 249 QVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKK 308
                     SLK L                          D+  N             +
Sbjct: 120 ---------ASLKHL--------------------------DVDNN-------------Q 131

Query: 309 LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSG 368
           LT LP         L  +    N+L  LPE        L  L+++NNQL  +  L     
Sbjct: 132 LTMLPELP----ALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPEL--PES 181

Query: 369 LNSLDLSWNQLEQI--NLIAFDGLSSLNTV-DLSHNLLTF--DEYQYGYSPLKQCVNLET 423
           L +LD+S N LE +    +                N +T   +        +       T
Sbjct: 182 LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPEN-------ILSLDPTCT 234

Query: 424 INLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLD 463
           I L  N +SS   + +S  T+  +       FS    Q +
Sbjct: 235 IILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  102 bits (255), Expect = 8e-23
 Identities = 54/302 (17%), Positives = 104/302 (34%), Gaps = 32/302 (10%)

Query: 107 LLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQ-YVPKLQVLDLGSNDVAYM 165
              +N  I+G + D F    + E   L G +  E  S + +  + +   L L   +++ +
Sbjct: 16  NSFYNT-ISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSL 74

Query: 166 DPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQ 225
              +   +T L    +  N LI+L         +L  LD   N +S LP         L+
Sbjct: 75  PDNLPPQITVL---EITQNALISLPELP----ASLEYLDACDNRLSTLPE----LPASLK 123

Query: 226 TFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA 285
               ++N+  M P         L+ I    ++  L  LP         L  + +  + + 
Sbjct: 124 HLDVDNNQLTMLP----ELPALLEYINADNNQ--LTMLP----ELPTSLEVLSVRNNQLT 173

Query: 286 ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC---KKLVKLELQRNKLKYLPENLFE 342
            LP        ++  + +     L SLP+   R+    +  +    + N++ ++PEN+  
Sbjct: 174 FLPELP----ESLEALDV-STNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENIL- 227

Query: 343 SLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNL 402
           SL    T+ L++N L +             D    ++                 D     
Sbjct: 228 SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW 287

Query: 403 LT 404
             
Sbjct: 288 FP 289

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 78.1 bits (192), Expect = 3e-15
 Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 24/158 (15%)

Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL---VGLSGLNSLDLSWNQLEQI 382
                N +     + F +  +     L         SL     ++  + L L+   L  +
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSL 74

Query: 383 NLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSM 442
                  ++ L   +++ N L         S  +   +LE ++   NR+S+L +      
Sbjct: 75  PDNLPPQITVL---EITQNALI--------SLPELPASLEYLDACDNRLSTLPE----LP 119

Query: 443 TSLKELDLRHNNFSFIPDQLDSIVSNKLT-LDLSFNQI 479
            SLK LD+ +N  + +P+         L  ++   NQ+
Sbjct: 120 ASLKHLDVDNNQLTMLPELP-----ALLEYINADNNQL 152

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.4 bits (141), Expect = 4e-09
 Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 29/302 (9%)

Query: 104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVA 163
           ++I   +N+ +T L +        LE L++R N +T L     +    L+ LD+ +N + 
Sbjct: 143 EYINADNNQ-LTMLPELP----TSLEVLSVRNNQLTFL----PELPESLEALDVSTNLLE 193

Query: 164 YMDPEIFKN---LTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSD 220
            +     +N     +        N++ ++   I +      ++ +  N +S       S 
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRITHIPENILSL-DPTCTIILEDNPLSSRIRESLSQ 252

Query: 221 LRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILG 280
                 ++     F M         + L     ++  ++ +   S ++            
Sbjct: 253 QTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHE------ 306

Query: 281 ESSIAELPSDLFWNSTNITNIV-LTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN 339
                E  +        +++ V            +          +L  Q   +      
Sbjct: 307 -----EHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATE 361

Query: 340 LFESLKELYTLNLKNNQL----ENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNT 395
             E    L   NL+   L               L SL     +LE +  IA D + +L+ 
Sbjct: 362 SCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHF 421

Query: 396 VD 397
           VD
Sbjct: 422 VD 423

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 95.1 bits (237), Expect = 1e-21
 Identities = 55/337 (16%), Positives = 112/337 (33%), Gaps = 79/337 (23%)

Query: 150 PKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN 209
                +  G ++V   D     +L  +  L+     +  +       + NL  L++  N 
Sbjct: 19  ANAIKIAAGKSNVT--DTVTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQ 74

Query: 210 ISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFA 269
           I+ L      +L K+     + N                           LK + +   A
Sbjct: 75  ITDLAP--LKNLTKITELELSGNP--------------------------LKNVSA--IA 104

Query: 270 NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQ 329
            L  + T+ L  + I ++                                   L  L L 
Sbjct: 105 GLQSIKTLDLTSTQITDVTP---------------------------LAGLSNLQVLYLD 137

Query: 330 RNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDG 389
            N++  +       L  L  L++ N Q+ ++T L  LS L +L    N++  I+      
Sbjct: 138 LNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS--PLAS 193

Query: 390 LSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELD 449
           L +L  V L +N ++        SPL    NL  + L+   I++       +   +    
Sbjct: 194 LPNLIEVHLKNNQIS------DVSPLANTSNLFIVTLTNQTITNQ--PVFYNNNLVVPNV 245

Query: 450 LRHNNFSFIPDQLDSIVSNKLTL---DLSFNQIAIVD 483
           ++  + + I     + +S+  T    +L++N  + ++
Sbjct: 246 VKGPSGAPIA---PATISDNGTYASPNLTWNLTSFIN 279

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 94.0 bits (234), Expect = 3e-21
 Identities = 49/289 (16%), Positives = 103/289 (35%), Gaps = 45/289 (15%)

Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
           ++    I  +  D          +    +++T+  +     +  +  L      V  ++ 
Sbjct: 3   ITQPTAINVIFPD--PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG 58

Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
              + L +L  L L  NQ+ +L      N+  +  L++SGN +  + +   + L+ ++T 
Sbjct: 59  --VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTL 112

Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL 287
              S +                                   A L  L  + L  + I  +
Sbjct: 113 DLTSTQITDVTP----------------------------LAGLSNLQVLYLDLNQITNI 144

Query: 288 PSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKEL 347
                   TN+  + + G+ +++ L      +  KL  L+   NK+  +      SL  L
Sbjct: 145 SP--LAGLTNLQYLSI-GNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNL 197

Query: 348 YTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTV 396
             ++LKNNQ+ +++ L   S L  + L+   +    +   + L   N V
Sbjct: 198 IEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV 246

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 92.4 bits (230), Expect = 1e-20
 Identities = 50/211 (23%), Positives = 97/211 (45%), Gaps = 19/211 (9%)

Query: 269 ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL 328
             L     +  G+S++ +  +    +   IT +       +T++     +    L+ LEL
Sbjct: 16  PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAF-GTGVTTIEG--VQYLNNLIGLEL 70

Query: 329 QRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFD 388
           + N++  L     ++L ++  L L  N L+N++++ GL  + +LDL+  Q+  +      
Sbjct: 71  KDNQITDLAP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT--PLA 126

Query: 389 GLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKEL 448
           GLS+L  + L  N +T        SPL    NL+ +++   ++S L    +++++ L  L
Sbjct: 127 GLSNLQVLYLDLNQIT------NISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTL 178

Query: 449 DLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
               N  S I   L S+  N + + L  NQI
Sbjct: 179 KADDNKISDISP-LASL-PNLIEVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 85.1 bits (211), Expect = 3e-18
 Identities = 53/291 (18%), Positives = 111/291 (38%), Gaps = 22/291 (7%)

Query: 98  DGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDL 157
             L     I    +  +T            + +L+  G  +T +     QY+  L  L+L
Sbjct: 16  PALANAIKIAAGKSN-VTDT--VTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLEL 70

Query: 158 GSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGV 217
             N +  + P   KNLT +  L L  N L N++      + ++++LD++   I+ +    
Sbjct: 71  KDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTP-- 124

Query: 218 FSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTV 277
            + L  LQ  Y + N+         A +  LQ + I   +  + +L     ANL  L T+
Sbjct: 125 LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQ--VSDLTP--LANLSKLTTL 178

Query: 278 ILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLP 337
              ++ I+++      +  N+  + L  + +++ +      +   L  + L    +   P
Sbjct: 179 KADDNKISDISP--LASLPNLIEVHLK-NNQISDVSP--LANTSNLFIVTLTNQTITNQP 233

Query: 338 ENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFD 388
                +L     +   +       ++       S +L+WN    IN +++ 
Sbjct: 234 VFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYT 284

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 98.3 bits (244), Expect = 1e-21
 Identities = 53/328 (16%), Positives = 103/328 (31%), Gaps = 71/328 (21%)

Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS 211
           +      S  +  + P            NL    + +      N + ++  +  + ++I 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK 56

Query: 212 ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANL 271
            +       L  +   + N N                ++  I                NL
Sbjct: 57  SVQG--IQYLPNVTKLFLNGN----------------KLTDIKP------------LTNL 86

Query: 272 PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN 331
             L  + L E+ I +L S                            +D KKL  L L+ N
Sbjct: 87  KNLGWLFLDENKIKDLSS---------------------------LKDLKKLKSLSLEHN 119

Query: 332 KLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLS 391
            +  +       L +L +L L NN++ +IT L  L+ L++L L  NQ+   +++   GL+
Sbjct: 120 GISDING--LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS--DIVPLAGLT 175

Query: 392 SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLR 451
            L  + LS N ++          L    NL+ + L      +   +  S++     +   
Sbjct: 176 KLQNLYLSKNHIS------DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229

Query: 452 HNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
             +        D     K  +     + 
Sbjct: 230 DGSLVTPEIISDDGDYEKPNVKWHLPEF 257

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 98.3 bits (244), Expect = 2e-21
 Identities = 48/310 (15%), Positives = 110/310 (35%), Gaps = 43/310 (13%)

Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
           +         I +++        +    +L    V   D      L S+  +  +++ + 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIK 56

Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY 247
           ++       +PN+  L ++GN ++ +     ++L+ L   + + N               
Sbjct: 57  SVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN--------------- 97

Query: 248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHK 307
            ++  +S               +L  L ++ L  + I+++      +   + ++ L G+ 
Sbjct: 98  -KIKDLSS------------LKDLKKLKSLSLEHNGISDING--LVHLPQLESLYL-GNN 141

Query: 308 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLS 367
           K+T +         KL  L L+ N++  +       L +L  L L  N + ++ +L GL 
Sbjct: 142 KITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLK 197

Query: 368 GLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLS 427
            L+ L+L   +     +     L   NTV  +   L   E        ++      +   
Sbjct: 198 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEF 257

Query: 428 YNRISSLFDD 437
            N +S +F  
Sbjct: 258 TNEVSFIFYQ 267

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.5 bits (198), Expect = 7e-16
 Identities = 52/320 (16%), Positives = 104/320 (32%), Gaps = 44/320 (13%)

Query: 97  FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
            D         L     +T            ++ +    + I  +     QY+P +  L 
Sbjct: 17  DDAFAETIKDNLKKKS-VTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLF 71

Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSG 216
           L  N +  + P    NL +L  L LD N++ +L+     ++  L+SL +  N IS +   
Sbjct: 72  LNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDING- 126

Query: 217 VFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNT 276
               L +L++ Y  +N+                          + ++     + L  L+T
Sbjct: 127 -LVHLPQLESLYLGNNK--------------------------ITDITV--LSRLTKLDT 157

Query: 277 VILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYL 336
           + L ++ I+++        T + N+ L     ++ L +      K L  LEL   +    
Sbjct: 158 LSLEDNQISDIVP--LAGLTKLQNLYL-SKNHISDLRA--LAGLKNLDVLELFSQECLNK 212

Query: 337 PENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTV 396
           P N   +L    T+   +  L     +         ++ W+  E  N ++F     +   
Sbjct: 213 PINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIG 272

Query: 397 DLSHNLLTFDEYQYGYSPLK 416
                               
Sbjct: 273 KAKARFHGRVTQPLKEVYTV 292

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.0 bits (129), Expect = 1e-07
 Identities = 30/211 (14%), Positives = 64/211 (30%), Gaps = 33/211 (15%)

Query: 97  FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
              L  ++ + L +NK IT +   +     +L++L+L  N I+++               
Sbjct: 127 LVHLPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDNQISDI--------------- 168

Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSG 216
                           LT L+ L L  N + +L       + NL  L++        P  
Sbjct: 169 -----------VPLAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPIN 215

Query: 217 VFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNT 276
             S+L    T         +   ++ ++    +   + +H        S +F     +  
Sbjct: 216 HQSNLVVPNTVKNTDG--SLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGK 273

Query: 277 VILGESSIAELPSDLFWNSTNITNIVLTGHK 307
                      P    +  +   +  +   K
Sbjct: 274 AKARFHGRVTQPLKEVYTVSYDVDGTVIKTK 304

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 86.7 bits (215), Expect = 2e-19
 Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 5/144 (3%)

Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
               +P+G+  N  +L    L ++ I +L   +F +  N+  + L    +L +LP  +F 
Sbjct: 30  RHASVPAGIPTNAQILY---LHDNQITKLEPGVFDSLINLKELYLGS-NQLGALPVGVFD 85

Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-GLSGLNSLDLSWN 377
              +L  L+L  N+L  LP  +F+ L  L  L +  N+L  +   +  L+ L  L L  N
Sbjct: 86  SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN 145

Query: 378 QLEQINLIAFDGLSSLNTVDLSHN 401
           QL+ I   AFD LSSL    L  N
Sbjct: 146 QLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 79.7 bits (197), Expect = 5e-17
 Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 7/129 (5%)

Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI 212
           Q+L L  N +  ++P +F +L +L+ L L  NQL  L   +F+++  L  LD+  N +++
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 213 LPSGVFSDLRKLQTFYANSNRFQMFPK--DLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
           LPS VF  L  L+  +   N+    P+  +    + +L +      ++ LK +P G F  
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL-----DQNQLKSIPHGAFDR 157

Query: 271 LPLLNTVIL 279
           L  L    L
Sbjct: 158 LSSLTHAYL 166

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 78.6 bits (194), Expect = 1e-16
 Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 2/125 (1%)

Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
           L  N+ IT L   +F     L+ L L  N +  L  GVF  + +L VLDLG+N +  +  
Sbjct: 47  LHDNQ-ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS 105

Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
            +F  L  L+ L +  N+L  L R     + +L  L +  N +  +P G F  L  L   
Sbjct: 106 AVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164

Query: 228 YANSN 232
           Y   N
Sbjct: 165 YLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 77.8 bits (192), Expect = 2e-16
 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 1/123 (0%)

Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
           + L L  N IT+L  GVF  +  L+ L LGSN +  +   +F +LT L +L+L  NQL  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYL 248
           L  A+F+ + +L+ L +  N ++ LP G    L  L     + N+ +  P   F  +  L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161

Query: 249 QVI 251
              
Sbjct: 162 THA 164

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 70.9 bits (174), Expect = 5e-14
 Identities = 43/183 (23%), Positives = 65/183 (35%), Gaps = 52/183 (28%)

Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
           T+ +IL L  NQ+  L   +F+++ NL+ L +  N +  LP GVF  L +L      +N+
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFW 293
                                     L  LPS +F  L                      
Sbjct: 100 --------------------------LTVLPSAVFDRL---------------------- 111

Query: 294 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 353
              ++  + +    KLT LP         L  L L +N+LK +P   F+ L  L    L 
Sbjct: 112 --VHLKELFM-CCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167

Query: 354 NNQ 356
            N 
Sbjct: 168 GNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 2/117 (1%)

Query: 92  LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
           L P  FD L  +K + L  N+ +  L   +F    QL  L+L  N +T L S VF  +  
Sbjct: 55  LEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH 113

Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
           L+ L +  N +  + P   + LT L  L LD NQL ++    F+ + +L    + GN
Sbjct: 114 LKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.9 bits (143), Expect = 6e-10
 Identities = 39/159 (24%), Positives = 62/159 (38%), Gaps = 40/159 (25%)

Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-- 364
           K+  S+P+ +  + + L    L  N++  L   +F+SL  L  L L +NQL  +   V  
Sbjct: 29  KRHASVPAGIPTNAQIL---YLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD 85

Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI 424
            L+ L  LDL  NQL  +    FD L                            V+L+ +
Sbjct: 86  SLTQLTVLDLGTNQLTVLPSAVFDRL----------------------------VHLKEL 117

Query: 425 NLSYNRISSL---FDDWISSMTSLKELDLRHNNFSFIPD 460
            +  N+++ L    +     +T L  L L  N    IP 
Sbjct: 118 FMCCNKLTELPRGIE----RLTHLTHLALDQNQLKSIPH 152

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.6 bits (142), Expect = 9e-10
 Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 25/122 (20%)

Query: 371 SLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT------FDEYQYGYSPLKQCVNLETI 424
            L L  NQ+ ++    FD L +L  + L  N L       FD              L  +
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD----------SLTQLTVL 93

Query: 425 NLSYNRISSL----FDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIA 480
           +L  N+++ L    FD     +  LKEL +  N  + +P  ++ +      L L  NQ+ 
Sbjct: 94  DLGTNQLTVLPSAVFD----RLVHLKELFMCCNKLTELPRGIERLTHLT-HLALDQNQLK 148

Query: 481 IV 482
            +
Sbjct: 149 SI 150

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 87.4 bits (217), Expect = 4e-19
 Identities = 52/309 (16%), Positives = 97/309 (31%), Gaps = 69/309 (22%)

Query: 171 KNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYAN 230
                    NL    + +      N + ++  +  + ++I  +       L  +   + N
Sbjct: 21  DAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLN 76

Query: 231 SNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD 290
            N                ++  I               ANL  L  + L E+ + +L S 
Sbjct: 77  GN----------------KLTDIKP------------LANLKNLGWLFLDENKVKDLSS- 107

Query: 291 LFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTL 350
                                      +D KKL  L L+ N +  +       L +L +L
Sbjct: 108 --------------------------LKDLKKLKSLSLEHNGISDING--LVHLPQLESL 139

Query: 351 NLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQY 410
            L NN++ +IT L  L+ L++L L  NQ+  I      GL+ L  + LS N ++      
Sbjct: 140 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHIS------ 191

Query: 411 GYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKL 470
               L    NL+ + L      +   +  S++     +     +        D     K 
Sbjct: 192 DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKP 251

Query: 471 TLDLSFNQI 479
            +     + 
Sbjct: 252 NVKWHLPEF 260

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 86.6 bits (215), Expect = 7e-19
 Identities = 52/302 (17%), Positives = 103/302 (34%), Gaps = 67/302 (22%)

Query: 107 LLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD 166
            ++    I  +  D      +    NL+  S+T+  +     +  +  +   ++D+  + 
Sbjct: 7   TITVPTPIKQIFSD--DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ 62

Query: 167 PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQT 226
               + L ++  L L+ N+L ++      N+ NL  L +  N +  L S    DL+KL++
Sbjct: 63  G--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKS 116

Query: 227 FYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE 286
                N                           + ++      +LP L ++ LG + I +
Sbjct: 117 LSLEHNG--------------------------ISDING--LVHLPQLESLYLGNNKITD 148

Query: 287 LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKE 346
           +                                  KL  L L+ N++  +       L +
Sbjct: 149 ITV---------------------------LSRLTKLDTLSLEDNQISDIVP--LAGLTK 179

Query: 347 LYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFD 406
           L  L L  N + ++ +L GL  L+ L+L   +     +     L   NTV  +   L   
Sbjct: 180 LQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

Query: 407 EY 408
           E 
Sbjct: 240 EI 241

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 85.1 bits (211), Expect = 4e-19
 Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 6/145 (4%)

Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
               +P+G+ A    L+   L  +S+  LP+ +F   T++T + L G  KL SLP+ +F 
Sbjct: 18  GRTSVPTGIPAQTTYLD---LETNSLKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGVFN 73

Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--GLSGLNSLDLSW 376
               L  L L  N+L+ LP  +F+ L +L  L L  NQL+++   V   L+ L  L L  
Sbjct: 74  KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133

Query: 377 NQLEQINLIAFDGLSSLNTVDLSHN 401
           NQL+ +    FD L+SL  + L  N
Sbjct: 134 NQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 83.2 bits (206), Expect = 2e-18
 Identities = 42/123 (34%), Positives = 63/123 (51%)

Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
             L+L  NS+  L +GVF  +  L  L LG N +  +   +F  LTSL  LNL  NQL +
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYL 248
           L   +F+ +  L+ L ++ N +  LP GVF  L +L+      N+ +  P  +F  +  L
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150

Query: 249 QVI 251
           Q I
Sbjct: 151 QYI 153

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 81.6 bits (202), Expect = 7e-18
 Identities = 38/126 (30%), Positives = 60/126 (47%)

Query: 107 LLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD 166
           L      +  L   +F     L  L L GN +  L +GVF  +  L  L+L +N +  + 
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92

Query: 167 PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQT 226
             +F  LT L+ L L+ NQL +L   +F+ +  L+ L +  N +  +P GVF  L  LQ 
Sbjct: 93  NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152

Query: 227 FYANSN 232
            + + N
Sbjct: 153 IWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 73.2 bits (180), Expect = 7e-15
 Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 51/183 (27%)

Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
                L+L+ N L +L   +F+ + +L  L + GN +  LP+GVF+ L  L     ++N+
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFW 293
                                     L+ LP+G+F  L                      
Sbjct: 88  --------------------------LQSLPNGVFDKL---------------------- 99

Query: 294 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 353
             T +  + L    +L SLP  +F    +L  L L +N+LK +P+ +F+ L  L  + L 
Sbjct: 100 --TQLKELAL-NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 156

Query: 354 NNQ 356
           +N 
Sbjct: 157 DNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 70.5 bits (173), Expect = 5e-14
 Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 2/98 (2%)

Query: 308 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--G 365
            L SLP+ +F +   L +L L  NKL+ LP  +F  L  L  LNL  NQL+++ + V   
Sbjct: 39  SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK 98

Query: 366 LSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLL 403
           L+ L  L L+ NQL+ +    FD L+ L  + L  N L
Sbjct: 99  LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 41/160 (25%)

Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-- 364
           +  TS+P+ +      L   +L+ N LK LP  +F+ L  L  L L  N+L+++ + V  
Sbjct: 17  QGRTSVPTGIPAQTTYL---DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN 73

Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI 424
            L+ L  L+LS NQL+ +    FD L                              L+ +
Sbjct: 74  KLTSLTYLNLSTNQLQSLPNGVFDKL----------------------------TQLKEL 105

Query: 425 NLSYNRISSL----FDDWISSMTSLKELDLRHNNFSFIPD 460
            L+ N++ SL    FD     +T LK+L L  N    +PD
Sbjct: 106 ALNTNQLQSLPDGVFD----KLTQLKDLRLYQNQLKSVPD 141

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 40/122 (32%), Positives = 53/122 (43%), Gaps = 32/122 (26%)

Query: 371 SLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT------FDEYQYGYSPLKQCVNLETI 424
            LDL  N L+ +    FD L+SL  + L  N L       F+          +  +L  +
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN----------KLTSLTYL 81

Query: 425 NLSYNRISSL----FDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLT----LDLSF 476
           NLS N++ SL    FD     +T LKEL L  N    +PD     V +KLT    L L  
Sbjct: 82  NLSTNQLQSLPNGVFD----KLTQLKELALNTNQLQSLPDG----VFDKLTQLKDLRLYQ 133

Query: 477 NQ 478
           NQ
Sbjct: 134 NQ 135

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 85.4 bits (212), Expect = 1e-17
 Identities = 74/379 (19%), Positives = 139/379 (36%), Gaps = 73/379 (19%)

Query: 127 QLESLNLRGNSITELY----SGVFQYVPKLQVLDLGSND-----VAYMDPEIFKNLTSLR 177
           +++ L+L+   +T       S   + +P LQ L L  N      +  +   +      L 
Sbjct: 86  KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145

Query: 178 ILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN 232
            L L++  L       L   +    P+ + L +S N+I+   +GV               
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAK-PDFKELTVSNNDIN--EAGV--------------- 187

Query: 233 RFQMFPKDLFAEMKYLQVIKISYHK---DSLKELPSGLFANLPL----LNTVILGESSIA 285
             ++  + L      L+ +K+       D+ ++L   + +   L    L +  LG+  +A
Sbjct: 188 --RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245

Query: 286 ELPSDLFWNSTNITNIVL-------TGHKKLTSLPSTLFRDCKKLVKLELQRNKL----- 333
           EL   L   S+ +  + +        G   L  +     R  + L +L L  N+L     
Sbjct: 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV----LRAKESLKELSLAGNELGDEGA 301

Query: 334 KYLPENLFESLKELYTLNLKNNQL-----ENITS-LVGLSGLNSLDLSWNQLEQINLIAF 387
           + L E L E   +L +L +K+         + +S L     L  L +S N+LE   +   
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361

Query: 388 -DGL----SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS-----SLFDD 437
             GL    S L  + L+   ++        + L    +L  ++LS N +       L + 
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 421

Query: 438 WISSMTSLKELDLRHNNFS 456
                  L++L L    +S
Sbjct: 422 VRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 84.2 bits (209), Expect = 2e-17
 Identities = 71/412 (17%), Positives = 128/412 (31%), Gaps = 73/412 (17%)

Query: 119 KDIFKGTPQLESLNLRGNSITELY----SGVFQYVPKLQVLDLGSND-----VAYMDPEI 169
            ++     Q + + L    +TE      S   +  P L  L+L SN+     V  +   +
Sbjct: 21  AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80

Query: 170 FKNLTSLRILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNIS-----ILPSGVFS 219
                 ++ L+L +  L       L+  +    P L+ L +S N +      +L  G+  
Sbjct: 81  QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL-PTLQELHLSDNLLGDAGLQLLCEGLLD 139

Query: 220 DLRKLQTFYANSNRFQMFPKDLFAEM----KYLQVIKISYHK---DSLKELPSGLFANLP 272
              +L+              +  A +       + + +S +      ++ L  GL  +  
Sbjct: 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC 199

Query: 273 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNK 332
            L  + L    +                           L   +      L +L L  NK
Sbjct: 200 QLEALKLESCGV--------------------TSDNCRDLCGIV-ASKASLRELALGSNK 238

Query: 333 L-----KYLPENLFESLKELYTLNLKNNQLENI------TSLVGLSGLNSLDLSWNQL-- 379
           L       L   L      L TL +    +           L     L  L L+ N+L  
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298

Query: 380 EQINLIA---FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS---- 432
           E   L+     +    L ++ +     T     +  S L Q   L  + +S NR+     
Sbjct: 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358

Query: 433 -SLFDDWISSMTSLKELDLRHNNFSF--IPDQLDSIVSNK--LTLDLSFNQI 479
             L        + L+ L L   + S         ++++N     LDLS N +
Sbjct: 359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 75.8 bits (187), Expect = 1e-14
 Identities = 60/368 (16%), Positives = 134/368 (36%), Gaps = 59/368 (16%)

Query: 152 LQVLDLGSNDVAYMD-PEIFKNLTSLRILNLDHNQL-----INLTRAIFNNVPNLRSLDI 205
           +Q LD+   +++     E+   L   +++ LD   L      +++ A+  N P L  L++
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN-PALAELNL 63

Query: 206 SGNNIS-----ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSL 260
             N +       +  G+ +   K+Q     +         + +    L+ +       +L
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST--LRTLP------TL 115

Query: 261 KELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT----GHKKLTSLPSTL 316
           +EL   L  N       +LG++ +  L   L      +  + L            L +++
Sbjct: 116 QEL--HLSDN-------LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL-ASV 165

Query: 317 FRDCKKLVKLELQRNKL-----KYLPENLFESLKELYTLNLKNNQLEN------ITSLVG 365
            R      +L +  N +     + L + L +S  +L  L L++  + +         +  
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225

Query: 366 LSGLNSLDLSWNQL--EQINLIA---FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVN 420
            + L  L L  N+L    +  +        S L T+ +    +T          L+   +
Sbjct: 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285

Query: 421 LETINLSYNRIS-----SLFDDWISSMTSLKELDLRHNNFSFIPDQL--DSIVSNK--LT 471
           L+ ++L+ N +       L +  +     L+ L ++  +F+          +  N+  L 
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345

Query: 472 LDLSFNQI 479
           L +S N++
Sbjct: 346 LQISNNRL 353

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 69.2 bits (170), Expect = 2e-12
 Identities = 57/319 (17%), Positives = 101/319 (31%), Gaps = 64/319 (20%)

Query: 199 NLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHK- 257
           +++SLDI    +S   +                        +L   ++  QV+++     
Sbjct: 4   DIQSLDIQCEELS--DARW---------------------AELLPLLQQCQVVRLDDCGL 40

Query: 258 --DSLKELPSGLFANLPL----LNTVILGESSIAELPSDLFWNSTNITNIVLT----GHK 307
                K++ S L  N  L    L +  LG+  +  +   L   S  I  + L        
Sbjct: 41  TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 100

Query: 308 KLTSLPSTLFRDCKKLVKLELQRNKL-----KYLPENLFESLKELYTLNLKNNQLENI-- 360
               L STL R    L +L L  N L     + L E L +    L  L L+   L     
Sbjct: 101 GCGVLSSTL-RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159

Query: 361 ----TSLVGLSGLNSLDLSWNQLEQINLIAF-DGLS----SLNTVDLSHNLLTFDEYQYG 411
               + L        L +S N + +  +     GL      L  + L    +T D  +  
Sbjct: 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219

Query: 412 YSPLKQCVNLETINLSYNRIS-----SLFDDWISSMTSLKELDLRHNNFSFIPDQLDSI- 465
              +    +L  + L  N++       L    +   + L+ L +     +        + 
Sbjct: 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT--AKGCGDLC 277

Query: 466 ----VSNKLT-LDLSFNQI 479
                   L  L L+ N++
Sbjct: 278 RVLRAKESLKELSLAGNEL 296

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 21/154 (13%), Positives = 50/154 (32%), Gaps = 21/154 (13%)

Query: 345 KELYTLNLKNNQL--ENITSLV-GLSGLNSLDLSWNQLEQINLI----AFDGLSSLNTVD 397
            ++ +L+++  +L       L+  L     + L    L +        A     +L  ++
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 398 LSHNLLTFDEYQYGYSPLKQC-VNLETINLSYNRISSLFDDW------ISSMTSLKELDL 450
           L  N L           L+     ++ ++L    ++            + ++ +L+EL L
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG--AGCGVLSSTLRTLPTLQELHL 120

Query: 451 RHNNFS-----FIPDQLDSIVSNKLTLDLSFNQI 479
             N         + + L         L L +  +
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 80.0 bits (198), Expect = 2e-17
 Identities = 32/166 (19%), Positives = 60/166 (36%), Gaps = 17/166 (10%)

Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQ 378
               L  + L    +  L     E    +  L + N    N   + GLS L  L +    
Sbjct: 42  QMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKD 99

Query: 379 LEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYN-RISSLFDD 437
           +    +    GL+SL  +D+SH+           + +     + +I+LSYN  I+ +   
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHD----DSILTKINTLPKVNSIDLSYNGAITDIMP- 154

Query: 438 WISSMTSLKELDLRHNNFSFIPDQLDSIVSN--KLT-LDLSFNQIA 480
            + ++  LK L+++ +            + +  KL  L      I 
Sbjct: 155 -LKTLPELKSLNIQFDGVHDY-----RGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 79.6 bits (197), Expect = 3e-17
 Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 10/159 (6%)

Query: 321 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLE 380
           K  +   L ++    + E     +  L  + L N  + ++T +     +  L ++     
Sbjct: 23  KAYLNGLLGQSSTANITE---AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT 79

Query: 381 QINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWIS 440
             N     GLS+L  + +    +T D        L    +L  +++S++         I+
Sbjct: 80  NYN--PISGLSNLERLRIMGKDVTSD----KIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 441 SMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
           ++  +  +DL +N        L ++     +L++ F+ +
Sbjct: 134 TLPKVNSIDLSYNGAITDIMPLKTL-PELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.8 bits (156), Expect = 8e-12
 Identities = 27/170 (15%), Positives = 60/170 (35%), Gaps = 16/170 (9%)

Query: 268 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 327
            A +  L  + L   ++ +L       + NI ++ +      T+           L +L 
Sbjct: 40  EAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH-ATNYNP--ISGLSNLERLR 94

Query: 328 LQRNKLKYLPENLFESLKELYTLNLKNNQLEN--ITSLVGLSGLNSLDLSWNQLEQINLI 385
           +    +          L  L  L++ ++  ++  +T +  L  +NS+DLS+N    I  I
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG--AITDI 152

Query: 386 -AFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL 434
                L  L ++++  + +        Y  ++    L  +      I   
Sbjct: 153 MPLKTLPELKSLNIQFDGVH------DYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 4e-11
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
             ++ L +     T         +  L+ L +   DV          LTSL +L++ H+ 
Sbjct: 66  HNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123

Query: 186 LINLTRAIFNNVPNLRSLDISGNN-ISILPSGVFSDLRKLQTFYANSNR 233
             +      N +P + S+D+S N  I+ +       L +L++     + 
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 4/115 (3%)

Query: 97  FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
             GL  ++ + +     +T        G   L  L++  ++  +        +PK+  +D
Sbjct: 84  ISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142

Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS 211
           L  N     D    K L  L+ LN+  + + +       + P L  L      I 
Sbjct: 143 LSYNGAIT-DIMPLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 31/229 (13%), Positives = 64/229 (27%), Gaps = 59/229 (25%)

Query: 151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
                 LG +  A +       + SL  + L +  + +LT        N++ L I+  + 
Sbjct: 24  AYLNGLLGQSSTANITEA---QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHA 78

Query: 211 SILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
           +       S L  L+                 + +  L ++ IS                
Sbjct: 79  TNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS---------------- 120

Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 330
                                    +   + +LT                 K+  ++L  
Sbjct: 121 ------------------------HSAHDDSILTK-----------INTLPKVNSIDLSY 145

Query: 331 NKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQL 379
           N        L ++L EL +LN++ + + +   +     LN L      +
Sbjct: 146 NGAITDIMPL-KTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTI 193

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 80.1 bits (198), Expect = 7e-17
 Identities = 40/184 (21%), Positives = 77/184 (41%), Gaps = 18/184 (9%)

Query: 296 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
            N     L G + +T L S   ++   +       + ++ L     +    L  L+L +N
Sbjct: 19  ANAVKQNL-GKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHN 73

Query: 356 QLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPL 415
           Q+ +++ L  L+ L  L ++ N+L+ +N I    LS L    L +N L           L
Sbjct: 74  QISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLF---LDNNELR------DTDSL 124

Query: 416 KQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLS 475
               NLE +++  N++ S+    +  ++ L+ LDL  N  +     L  +      +DL+
Sbjct: 125 IHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNTGG-LTRLKKVN-WIDLT 180

Query: 476 FNQI 479
             + 
Sbjct: 181 GQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 68.1 bits (167), Expect = 8e-13
 Identities = 44/277 (15%), Positives = 90/277 (32%), Gaps = 44/277 (15%)

Query: 107 LLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD 166
            +     I  +  D   G       NL   S+T+L S   + +  +Q  +  ++++  + 
Sbjct: 2   SIQRPTPINQVFPD--PGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLA 57

Query: 167 PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQT 226
               +  T+L+ L+L HNQ+ +L+     ++  L  L ++ N +  L          L  
Sbjct: 58  G--MQFFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNRLKNLN---GIPSACLSR 110

Query: 227 FYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE 286
            + ++N  +         +K L+++ I  +K  LK +       L  L            
Sbjct: 111 LFLDNNELRDTDS--LIHLKNLEILSIRNNK--LKSIVM--LGFLSKLEV---------- 154

Query: 287 LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKE 346
               L  +   ITN                    KK+  ++L   K    P      L  
Sbjct: 155 ----LDLHGNEITNT-------------GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYI 197

Query: 347 LYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQIN 383
             T+   + +  +   +          + W      +
Sbjct: 198 TNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTD 234

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 48/210 (22%), Positives = 83/210 (39%), Gaps = 18/210 (8%)

Query: 239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 298
             +F +      +K +  K S+ +L S     L  +       S+I  L        TN+
Sbjct: 10  NQVFPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFFTNL 65

Query: 299 TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 358
             + L  H +++ L     +D  KL +L + RN+LK L       L  L+   L NN+L 
Sbjct: 66  KELHL-SHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLF---LDNNELR 119

Query: 359 NITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQC 418
           +  SL+ L  L  L +  N+L+ I       LS L  +DL  N +T          L + 
Sbjct: 120 DTDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEIT------NTGGLTRL 171

Query: 419 VNLETINLSYNRISSLFDDWISSMTSLKEL 448
             +  I+L+  +  +    +   +     +
Sbjct: 172 KKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 56/264 (21%), Positives = 87/264 (32%), Gaps = 66/264 (25%)

Query: 133 LRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRA 192
            R   I +++      +      +LG   V   D    K L+ ++  N D++ + +L   
Sbjct: 4   QRPTPINQVFP--DPGLANAVKQNLGKQSVT--DLVSQKELSGVQNFNGDNSNIQSLA-- 57

Query: 193 IFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIK 252
                 NL+ L +S N IS L      DL KL+    N NR                   
Sbjct: 58  GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR------------------- 96

Query: 253 ISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSL 312
                  LK L     A L                 S LF ++  + +            
Sbjct: 97  -------LKNLNGIPSACL-----------------SRLFLDNNELRDT----------- 121

Query: 313 PSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSL 372
                   K L  L ++ NKLK +       L +L  L+L  N++ N   L  L  +N +
Sbjct: 122 --DSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGGLTRLKKVNWI 177

Query: 373 DLSWNQLEQINLIAFDGLSSLNTV 396
           DL+  +     +     L   NTV
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTV 201

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 78.5 bits (194), Expect = 8e-17
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 4/123 (3%)

Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEI 169
            NK +  L K I +       L L GN  T +          L ++DL +N ++ +  + 
Sbjct: 18  SNKGLKVLPKGIPRDV---TELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQS 73

Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYA 229
           F N+T L  L L +N+L  +    F+ + +LR L + GN+IS++P G F+DL  L     
Sbjct: 74  FSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI 133

Query: 230 NSN 232
            +N
Sbjct: 134 GAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 73.1 bits (180), Expect = 5e-15
 Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 1/99 (1%)

Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI 212
             L L  N    + P+   N   L +++L +N++  L+   F+N+  L +L +S N +  
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 213 LPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVI 251
           +P   F  L+ L+    + N   + P+  F ++  L  +
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 31/145 (21%)

Query: 213 LPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP 272
           LP G+  D+ +L   Y + N+F + PK+  +  K+L +I +S ++  +  L +  F+N+ 
Sbjct: 25  LPKGIPRDVTEL---YLDGNQFTLVPKE-LSNYKHLTLIDLSNNR--ISTLSNQSFSNMT 78

Query: 273 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNK 332
            L T+IL               S N          +L  +P   F   K L  L L  N 
Sbjct: 79  QLLTLIL---------------SYN----------RLRCIPPRTFDGLKSLRLLSLHGND 113

Query: 333 LKYLPENLFESLKELYTLNLKNNQL 357
           +  +PE  F  L  L  L +  N L
Sbjct: 114 ISVVPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 27/143 (18%)

Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
            LK LP G+  ++  L    L  +    +P +   N  ++T I L  + ++++L +  F 
Sbjct: 21  GLKVLPKGIPRDVTELY---LDGNQFTLVPKE-LSNYKHLTLIDL-SNNRISTLSNQSFS 75

Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQ 378
           +  +L+ L L  N+L+ +P   F+ LK L  L+L  N +  +    G             
Sbjct: 76  NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE--G------------- 120

Query: 379 LEQINLIAFDGLSSLNTVDLSHN 401
                  AF+ LS+L+ + +  N
Sbjct: 121 -------AFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.9 bits (125), Expect = 8e-08
 Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 25/100 (25%)

Query: 371 SLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT------FDEYQYGYSPLKQCVNLETI 424
            L L  NQ   +          L  +DLS+N ++      F               L T+
Sbjct: 35  ELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFS----------NMTQLLTL 83

Query: 425 NLSYNRISSL----FDDWISSMTSLKELDLRHNNFSFIPD 460
            LSYNR+  +    FD     + SL+ L L  N+ S +P+
Sbjct: 84  ILSYNRLRCIPPRTFD----GLKSLRLLSLHGNDISVVPE 119

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 28/136 (20%)

Query: 329 QRNKLKYLPENLFESLKELYTLNLKNNQLENI-TSLVGLSGLNSLDLSWNQLEQINLIAF 387
               LK LP+ +   + ELY   L  NQ   +   L     L  +DLS N++  ++  +F
Sbjct: 18  SNKGLKVLPKGIPRDVTELY---LDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSF 74

Query: 388 DGLSSLNTVDLSHNLLT------FDEYQYGYSPLKQCVNLETINLSYNRISSL----FDD 437
             ++ L T+ LS+N L       FD             +L  ++L  N IS +    F+D
Sbjct: 75  SNMTQLLTLILSYNRLRCIPPRTFDGL----------KSLRLLSLHGNDISVVPEGAFND 124

Query: 438 WISSMTSLKELDLRHN 453
               +++L  L +  N
Sbjct: 125 ----LSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 415 LKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLT--- 471
           L    +L  I+LS NRIS+L +   S+MT L  L L +N    IP +      + L    
Sbjct: 50  LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR----TFDGLKSLR 105

Query: 472 -LDLSFNQI 479
            L L  N I
Sbjct: 106 LLSLHGNDI 114

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 81.0 bits (201), Expect = 8e-17
 Identities = 57/270 (21%), Positives = 102/270 (37%), Gaps = 45/270 (16%)

Query: 196 NVPNLRSLDISGNNIS----ILPSGVFSDLRKLQTFY-ANSNRFQ-MFPKDLFAEMKYLQ 249
               + +LD+SG N+     I  S   ++L  L   Y    N      P  + A++  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSS--LANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLH 104

Query: 250 VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL 309
            + I++   S   +P  L + +  L T+            D  +N+       L+G    
Sbjct: 105 YLYITHTNVS-GAIPDFL-SQIKTLVTL------------DFSYNA-------LSG---- 139

Query: 310 TSLPSTLFRDCKKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLE-NITSLVGLS 367
            +LP ++      LV +    N++   +P++     K   ++ +  N+L   I       
Sbjct: 140 -TLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197

Query: 368 GLNSLDLSWNQLE-QINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL 426
            L  +DLS N LE     + F    +   + L+ N L FD        +    NL  ++L
Sbjct: 198 NLAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFD-----LGKVGLSKNLNGLDL 251

Query: 427 SYNRISSLFDDWISSMTSLKELDLRHNNFS 456
             NRI       ++ +  L  L++  NN  
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 80.3 bits (199), Expect = 1e-16
 Identities = 44/220 (20%), Positives = 79/220 (35%), Gaps = 49/220 (22%)

Query: 294 NSTNITNIVLTGHKKLT-SLPSTLFRDCKKLVKLELQRNKLK-YLPENLFESLKELYTLN 351
           N   +  + + G   L   +P  + +   +L  L +    +   +P+ L   +K L TL+
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLD 131

Query: 352 LKNNQLE-NI-TSLVGLSGLNSLDLSWNQL-----EQI----NLIAFDGLS--------- 391
              N L   +  S+  L  L  +    N++     +       L     +S         
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Query: 392 ------SLNTVDLSHNLLTFDEYQYGYSP--LKQCVNLETINLSYNR----ISSLFDDWI 439
                 +L  VDLS N+L       G +        N + I+L+ N     +  +     
Sbjct: 192 PTFANLNLAFVDLSRNMLE------GDASVLFGSDKNTQKIHLAKNSLAFDLGKV----- 240

Query: 440 SSMTSLKELDLRHNNFS-FIPDQLDSIVSNKLTLDLSFNQ 478
               +L  LDLR+N     +P  L  +     +L++SFN 
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQL-KFLHSLNVSFNN 279

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 74.5 bits (184), Expect = 1e-14
 Identities = 56/269 (20%), Positives = 97/269 (36%), Gaps = 53/269 (19%)

Query: 151 KLQVLDLGSNDVA--YMDPEIFKNLTSLRILNLDHNQLINLTRAI---FNNVPNLRSLDI 205
           ++  LDL   ++   Y  P    NL  L  L +      NL   I      +  L  L I
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN--NLVGPIPPAIAKLTQLHYLYI 108

Query: 206 SGNNIS-ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELP 264
           +  N+S  +P    S ++ L T   + N                              LP
Sbjct: 109 THTNVSGAIPDF-LSQIKTLVTLDFSYNALS-------------------------GTLP 142

Query: 265 SGLFANLPLLNTVILGESSIA-ELPSDLFWNSTNITNIVLTGHKKLT-SLPSTLFRDCKK 322
             + ++LP L  +    + I+  +P      S   T++ +    +LT  +P T       
Sbjct: 143 PSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI-SRNRLTGKIPPTFANL--N 198

Query: 323 LVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLE-NITSLVGLSGLNSLDLSWNQL- 379
           L  ++L RN L+         S K    ++L  N L  ++  +     LN LDL  N++ 
Sbjct: 199 LAFVDLSRNMLEGDASVLFG-SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257

Query: 380 ----EQINLIAFDGLSSLNTVDLSHNLLT 404
               + +       L  L+++++S N L 
Sbjct: 258 GTLPQGLT-----QLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 65.6 bits (161), Expect = 1e-11
 Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 14/145 (9%)

Query: 343 SLKELYTLNLKNNQLE---NITSLVG-LSGLNSLDLS-WNQLEQINLIAFDGLSSLNTVD 397
               +  L+L    L     I S +  L  LN L +   N L      A   L+ L+ + 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 398 LSHNLLTFDEYQYGYSP--LKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
           ++H  ++      G  P  L Q   L T++ SYN +S      ISS+ +L  +    N  
Sbjct: 108 ITHTNVS------GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 456 S-FIPDQLDSIVSNKLTLDLSFNQI 479
           S  IPD   S      ++ +S N++
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRL 186

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 60.6 bits (148), Expect = 4e-10
 Identities = 53/261 (20%), Positives = 91/261 (34%), Gaps = 69/261 (26%)

Query: 150 PKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAI---FNNVPNLRSLDIS 206
            +L  L +   +V+   P+    + +L  L+  +N    L+  +    +++PNL  +   
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN---ALSGTLPPSISSLPNLVGITFD 157

Query: 207 GNNIS-ILPSGVFSDLRKLQTF-YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELP 264
           GN IS  +P    S   KL T    + NR                               
Sbjct: 158 GNRISGAIPDSYGS-FSKLFTSMTISRNRL------------------------------ 186

Query: 265 SGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 324
           +G    +P          ++A +  DL  N        L G               K   
Sbjct: 187 TG---KIP----PTFANLNLAFV--DLSRNM-------LEG-----DASVLFGS-DKNTQ 224

Query: 325 KLELQRNKLK-YLPENLFESLKELYTLNLKNNQLE-NI-TSLVGLSGLNSLDLSWNQLE- 380
           K+ L +N L   L +      K L  L+L+NN++   +   L  L  L+SL++S+N L  
Sbjct: 225 KIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 381 QINLIAFDGLSSLNTVDLSHN 401
           +I       L   +    ++N
Sbjct: 283 EI--PQGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.5 bits (132), Expect = 4e-08
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 13/124 (10%)

Query: 362 SLVGLSGLNSLDLSWNQLEQINLI--AFDGLSSLNTVDLSH-NLLTFDEYQYGYSP--LK 416
           +      +N+LDLS   L +   I  +   L  LN + +   N L       G  P  + 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV------GPIPPAIA 98

Query: 417 QCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFS-FIPDQLDSIVSNKLTLDLS 475
           +   L  + +++  +S    D++S + +L  LD  +N  S  +P  + S+  N + +   
Sbjct: 99  KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL-PNLVGITFD 157

Query: 476 FNQI 479
            N+I
Sbjct: 158 GNRI 161

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 12/147 (8%)

Query: 94  PPYFDGLHFVKHILLSHNKEITG-LHKDIFKGTPQLESLNLRGNSIT-ELYSGVFQYVPK 151
           PP    L  +  I    N+ I+G +       +    S+ +  N +T ++          
Sbjct: 142 PPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--N 198

Query: 152 LQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAI--FNNVPNLRSLDISGNN 209
           L  +DL  N +      +F +  + + ++L  N   +L   +       NL  LD+  N 
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN---SLAFDLGKVGLSKNLNGLDLRNNR 255

Query: 210 IS-ILPSGVFSDLRKLQTFYANSNRFQ 235
           I   LP G  + L+ L +   + N   
Sbjct: 256 IYGTLPQG-LTQLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.5 bits (114), Expect = 8e-06
 Identities = 51/313 (16%), Positives = 94/313 (30%), Gaps = 61/313 (19%)

Query: 70  SKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITG-LHKDIFKGTPQL 128
           +      +N L  S          P     L ++  + +     + G +   I K T QL
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QL 103

Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI- 187
             L +   +++         +  L  LD   N ++   P    +L +L  +  D N++  
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 188 NLTRAIFNNVPNLRSLDISGNNIS-ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK 246
            +  +  +      S+ IS N ++  +P    +    L     + N  +           
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLE----------- 210

Query: 247 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGH 306
                          +       +      +             L  NS       L   
Sbjct: 211 --------------GDASVLFG-SDKNTQKI------------HLAKNS-------LAF- 235

Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLE-NITSLV 364
                L        K L  L+L+ N++   LP+ L   LK L++LN+  N L   I    
Sbjct: 236 ----DLGK--VGLSKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNVSFNNLCGEIPQGG 288

Query: 365 GLSGLNSLDLSWN 377
            L   +    + N
Sbjct: 289 NLQRFDVSAYANN 301

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 77.7 bits (192), Expect = 8e-17
 Identities = 32/104 (30%), Positives = 51/104 (49%)

Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
             L L  N +  L  GVF  + +L  L L  N +  +   +F  LT L IL L  N+L +
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN 232
           L   +F+ +  L+ L +  N +  +P G+F  L  LQ  + ++N
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 75.8 bits (187), Expect = 4e-16
 Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 2/96 (2%)

Query: 308 KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV--G 365
           KL SLP  +F    +L KL L +N+++ LP+ +F+ L +L  L L  N+L+++ + V   
Sbjct: 39  KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDK 98

Query: 366 LSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
           L+ L  L L  NQL+ +    FD L+SL  + L  N
Sbjct: 99  LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 69.2 bits (170), Expect = 8e-14
 Identities = 30/99 (30%), Positives = 51/99 (51%)

Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI 212
             L+L SN +  +   +F  LT L  L+L  NQ+ +L   +F+ +  L  L +  N +  
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 213 LPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVI 251
           LP+GVF  L +L+    ++N+ +  P  +F  +  LQ I
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 65.7 bits (161), Expect = 1e-12
 Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 5/99 (5%)

Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-- 364
           K LTS+P+ +     +L   EL+ NKL+ LP  +F+ L +L  L+L  NQ++++   V  
Sbjct: 17  KGLTSVPTGIPSSATRL---ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD 73

Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLL 403
            L+ L  L L  N+L+ +    FD L+ L  + L  N L
Sbjct: 74  KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 2/106 (1%)

Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
           +S   L L+ N+L +L   +F+ +  L  L +S N I  LP GVF  L KL   Y + N+
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVIL 279
            Q  P  +F ++  L+  +++   + LK +P G+F  L  L  + L
Sbjct: 88  LQSLPNGVFDKLTQLK--ELALDTNQLKSVPDGIFDRLTSLQKIWL 131

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 1/101 (0%)

Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
           L  NK +  L   +F    QL  L+L  N I  L  GVF  + KL +L L  N +  +  
Sbjct: 35  LESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN 93

Query: 168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
            +F  LT L+ L LD NQL ++   IF+ + +L+ + +  N
Sbjct: 94  GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 1/101 (0%)

Query: 256 HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 315
             + L+ LP G+F  L  L  + L ++ I  LP  +F   T +T + L    KL SLP+ 
Sbjct: 36  ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL-HENKLQSLPNG 94

Query: 316 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 356
           +F    +L +L L  N+LK +P+ +F+ L  L  + L  N 
Sbjct: 95  VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 77.3 bits (191), Expect = 1e-16
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 1/105 (0%)

Query: 129 ESLNLRGNSITELYS-GVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLI 187
             L L  N +  + S G+F  +P L  L+L  N +  ++P  F+  + ++ L L  N++ 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 188 NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN 232
            ++  +F  +  L++L++  N IS +  G F  L  L +    SN
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 1/100 (1%)

Query: 153 QVLDLGSNDVAYMDPE-IFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS 211
             L L  N++  +  + +F  L  L  L L  NQL  +    F    +++ L +  N I 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 212 ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVI 251
            + + +F  L +L+T     N+        F  +  L  +
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 1/104 (0%)

Query: 106 ILLSHNKEITGLHKD-IFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAY 164
            LL ++ E+  +  D +F   P L  L L+ N +T +    F+    +Q L LG N +  
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92

Query: 165 MDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
           +  ++F  L  L+ LNL  NQ+  +    F ++ +L SL+++ N
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 27/144 (18%)

Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSD-LFWNSTNITNIVLTGHKKLTSLPSTLF 317
            LKE+P  +  +   L    L ++ +  + SD LF    ++  + L    +LT +    F
Sbjct: 19  GLKEIPRDIPLHTTELL---LNDNELGRISSDGLFGRLPHLVKLEL-KRNQLTGIEPNAF 74

Query: 318 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWN 377
                + +L+L  NK+K +   +F  L +L TLNL +NQ+  +    G            
Sbjct: 75  EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP--G------------ 120

Query: 378 QLEQINLIAFDGLSSLNTVDLSHN 401
                   +F+ L+SL +++L+ N
Sbjct: 121 --------SFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 32/157 (20%), Positives = 47/157 (29%), Gaps = 58/157 (36%)

Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN-LFESLKELYTLNLKNNQLENITSLV- 364
           + L  +P  +     +L    L  N+L  +  + LF  L  L  L LK NQL  I     
Sbjct: 18  RGLKEIPRDIPLHTTEL---LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF 74

Query: 365 -GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLET 423
            G S +  L L  N++++I+   F GL                                 
Sbjct: 75  EGASHIQELQLGENKIKEISNKMFLGL--------------------------------- 101

Query: 424 INLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPD 460
                                LK L+L  N  S +  
Sbjct: 102 -------------------HQLKTLNLYDNQISCVMP 119

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 30/138 (21%)

Query: 329 QRNKLKYLPENLFESLKELYTLNLKNNQLENITS---LVGLSGLNSLDLSWNQLEQINLI 385
               LK +P ++     EL    L +N+L  I+S      L  L  L+L  NQL  I   
Sbjct: 16  TGRGLKEIPRDIPLHTTELL---LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN 72

Query: 386 AFDGLSSLNTVDLSHNLLT------FDEYQYGYSPLKQCVNLETINLSYNRISSL----F 435
           AF+G S +  + L  N +       F               L+T+NL  N+IS +    F
Sbjct: 73  AFEGASHIQELQLGENKIKEISNKMFLGL----------HQLKTLNLYDNQISCVMPGSF 122

Query: 436 DDWISSMTSLKELDLRHN 453
           +     + SL  L+L  N
Sbjct: 123 E----HLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 92  LSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPK 151
           + P  F+G   ++ + L  NK I  +   +F G  QL++LNL  N I+ +  G F+++  
Sbjct: 69  IEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127

Query: 152 LQVLDLGSN 160
           L  L+L SN
Sbjct: 128 LTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 46/168 (27%)

Query: 416 KQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLT---- 471
            +  +L  + L  N+++ +  +     + ++EL L  N    I ++    +   L     
Sbjct: 51  GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK----MFLGLHQLKT 106

Query: 472 LDLSFNQIAIV------DLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYD 525
           L+L  NQI+ V       L +L                      + L  NP  CNC    
Sbjct: 107 LNLYDNQISCVMPGSFEHLNSLT--------------------SLNLASNPFNCNCHLAW 146

Query: 526 LIRFVSKKMTKTVYQMLELVTDNLECFGNA---GVGINSVRPENLTCD 570
              ++ KK          L      C   +    V I  +      C 
Sbjct: 147 FAEWLRKK---------SLNGGAARCGAPSKVRDVQIKDLPHSEFKCS 185

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.9 bits (197), Expect = 2e-16
 Identities = 35/193 (18%), Positives = 56/193 (29%), Gaps = 21/193 (10%)

Query: 297 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 356
           N+ N+          L          L  L + +                L TL+L +N 
Sbjct: 127 NLRNVSWATR--DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184

Query: 357 LENITSLV------GLSGLNSLDLSWNQLEQINLIA---FDGLSSLNTVDLSHNLLTFDE 407
                 L+          L  L L    +E  + +          L  +DLSHN L    
Sbjct: 185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244

Query: 408 YQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVS 467
                        L ++NLS+  +  +     +    L  LDL +N     P   +    
Sbjct: 245 GAPSCDWPS---QLNSLNLSFTGLKQVPKGLPA---KLSVLDLSYNRLDRNPSPDE---L 295

Query: 468 NKLT-LDLSFNQI 479
            ++  L L  N  
Sbjct: 296 PQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.6 bits (196), Expect = 2e-16
 Identities = 41/235 (17%), Positives = 77/235 (32%), Gaps = 17/235 (7%)

Query: 262 ELPSGLFANLPLLNTV--ILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD 319
           EL  G  +   LL  V          ++   L      +    +       +L       
Sbjct: 37  ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALR---VLG 93

Query: 320 CKKLVKLELQRNKL--KYLPENLFESLKELYTLNLKNNQLENITSLVG------LSGLNS 371
              L +L L+  ++     P  L  +  +L  LNL+N       + +         GL  
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 372 LDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRI 431
           L ++       +        +L+T+DLS N    +          +   L+ + L    +
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 432 SSLFDDW---ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKL-TLDLSFNQIAIV 482
            +         ++   L+ LDL HN+             ++L +L+LSF  +  V
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.8 bits (181), Expect = 2e-14
 Identities = 49/297 (16%), Positives = 90/297 (30%), Gaps = 41/297 (13%)

Query: 97  FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSG---VFQYVPKLQ 153
           + G   ++++L   + E           +  L+ L +R   I             +  LQ
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 154 VLDLGSNDVAYMDP-----EIFKNLTSLRILNLDHNQLINLTRAIFNNV-PNLRSLDISG 207
            L L + +V    P         +L  L + N+           +   + P L+ L I+ 
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 208 NNISILPSGVFSDLRKLQTFYANSNRFQ----MFPKDLFAEMKYLQVIKISY-HKDSLKE 262
            +              L T   + N       +       +   LQV+ +     ++   
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 263 LPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKK 322
           + S L A    L  + L  +S+ +                           +       +
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAA------------------------GAPSCDWPSQ 254

Query: 323 LVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQL 379
           L  L L    LK +P+ L   L     L+L  N+L+   S   L  + +L L  N  
Sbjct: 255 LNSLNLSFTGLKQVPKGLPAKLS---VLDLSYNRLDRNPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.5 bits (170), Expect = 5e-13
 Identities = 33/206 (16%), Positives = 63/206 (30%), Gaps = 11/206 (5%)

Query: 54  TFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKE 113
           T     +P          L I+ +  L   N         P        +  + L +   
Sbjct: 74  TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133

Query: 114 ITG---LHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSN----DVAYMD 166
            T    L +      P L+ L++             +  P L  LDL  N    +   + 
Sbjct: 134 ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193

Query: 167 PEIFKNLTSLRILNLDHNQLINLTRAI---FNNVPNLRSLDISGNNIS-ILPSGVFSDLR 222
                   +L++L L +  +   +            L+ LD+S N++     +       
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253

Query: 223 KLQTFYANSNRFQMFPKDLFAEMKYL 248
           +L +   +    +  PK L A++  L
Sbjct: 254 QLNSLNLSFTGLKQVPKGLPAKLSVL 279

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 29/130 (22%), Positives = 44/130 (33%), Gaps = 6/130 (4%)

Query: 60  LPDENFISLFSKLNITTINTLAFS-NSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLH 118
           L +   IS    L   T+  LA           +          ++ + LSHN       
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 119 KDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI 178
                   QL SLNL    + ++  G+     KL VLDL  N +          L  +  
Sbjct: 246 APSCDWPSQLNSLNLSFTGLKQVPKGLPA---KLSVLDLSYNRLDRNPSPDE--LPQVGN 300

Query: 179 LNLDHNQLIN 188
           L+L  N  ++
Sbjct: 301 LSLKGNPFLD 310

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 75.1 bits (185), Expect = 1e-15
 Identities = 33/163 (20%), Positives = 74/163 (45%), Gaps = 9/163 (5%)

Query: 322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQ 381
           + V+L      ++ +   L  +LK    L L  N +E I+SL G+  L  L L  N +++
Sbjct: 26  EKVELHGMIPPIEKMDATL-STLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK 84

Query: 382 INLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD-DWIS 440
           I  +      +L  + +S+N +           +++ VNL  + +S N+I++  + D ++
Sbjct: 85  IENL-DAVADTLEELWISYNQIASLS------GIEKLVNLRVLYMSNNKITNWGEIDKLA 137

Query: 441 SMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVD 483
           ++  L++L L  N       + ++    ++ +      +  +D
Sbjct: 138 ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 320 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQL 379
            + L  L L RN +K + ENL      L  L +  NQ+ +++ +  L  L  L +S N++
Sbjct: 69  MENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKI 127

Query: 380 EQIN-LIAFDGLSSLNTVDLSHNLLTFDEYQYGYSP 414
                +     L  L  + L+ N L  D  +   + 
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 125 TPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHN 184
             +   L+     I ++ + +       + L L +N++  +       + +LRIL+L  N
Sbjct: 24  EAEKVELHGMIPPIEKMDATLSTL-KACKHLALSTNNIEKISS--LSGMENLRILSLGRN 80

Query: 185 QLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
            +  +   +      L  L IS N I+ L       L  L+  Y ++N+
Sbjct: 81  LIKKIE-NLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNK 126

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 7/142 (4%)

Query: 107 LLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD 166
           L      I  +   +       + L L  N+I ++ S +   +  L++L LG N +  ++
Sbjct: 30  LHGMIPPIEKMDATL-STLKACKHLALSTNNIEKI-SSL-SGMENLRILSLGRNLIKKIE 86

Query: 167 PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPS-GVFSDLRKLQ 225
             +     +L  L + +NQ+ +L+      + NLR L +S N I+        + L KL+
Sbjct: 87  N-LDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143

Query: 226 TFYANSNRFQMFPKDLFAEMKY 247
                 N      K+  A  +Y
Sbjct: 144 DLLLAGNPLYNDYKENNATSEY 165

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 79.4 bits (195), Expect = 1e-15
 Identities = 46/265 (17%), Positives = 86/265 (32%), Gaps = 17/265 (6%)

Query: 211 SILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
             LP+   +D     TF           + +  + +     + S   + L      +   
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVE-K 360

Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR-------DCKKL 323
             +L + +     + EL  +  W    I  +++     L     TL         D  + 
Sbjct: 361 STVLQSELESCKELQELEPENKWCLLTII-LLMRALDPLLYEKETLQYFSTLKAVDPMRA 419

Query: 324 VKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQIN 383
             L+  R+K       L     ++  L+L +  L  +  L  L  +  LDLS N+L  + 
Sbjct: 420 AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALP 479

Query: 384 LIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD-DWISSM 442
             A   L  L  +  S N L   +       +     L+ + L  NR+        + S 
Sbjct: 480 -PALAALRCLEVLQASDNALENVD------GVANLPRLQELLLCNNRLQQSAAIQPLVSC 532

Query: 443 TSLKELDLRHNNFSFIPDQLDSIVS 467
             L  L+L+ N+        + +  
Sbjct: 533 PRLVLLNLQGNSLCQEEGIQERLAE 557

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 78.3 bits (192), Expect = 3e-15
 Identities = 54/258 (20%), Positives = 93/258 (36%), Gaps = 12/258 (4%)

Query: 151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
            L    L      +    I+    S +   L  ++     R    +   L   ++S    
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDE-QLFRCELSVEKS 361

Query: 211 SILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
           ++L S      ++LQ     +    +    L   +  L      Y K++L+   S L A 
Sbjct: 362 TVLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLL-----YEKETLQYF-STLKAV 414

Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 330
            P+    +    S   L + +         ++   HK LT L          +  L+L  
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSH 472

Query: 331 NKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQI-NLIAFDG 389
           N+L+ LP  L  +L+ L  L   +N LEN+  +  L  L  L L  N+L+Q   +     
Sbjct: 473 NRLRALPPAL-AALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVS 531

Query: 390 LSSLNTVDLSHNLLTFDE 407
              L  ++L  N L  +E
Sbjct: 532 CPRLVLLNLQGNSLCQEE 549

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.3 bits (161), Expect = 2e-11
 Identities = 29/170 (17%), Positives = 69/170 (40%), Gaps = 18/170 (10%)

Query: 315 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDL 374
           +    CK+L +LE +          +   ++ L  L  +   L+  ++L  +  + +  L
Sbjct: 366 SELESCKELQELEPENKWCLL---TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422

Query: 375 SWNQLEQI--NLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS 432
              + + +  N +     + +  + L+H  LT   +      L+Q + +  ++LS+NR+ 
Sbjct: 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH------LEQLLLVTHLDLSHNRLR 476

Query: 433 SLFDDWISSMTSLKELDLRHNNFSFIP--DQLDSIVSNKLTLDLSFNQIA 480
           +L    ++++  L+ L    N    +     L  +      L L  N++ 
Sbjct: 477 AL-PPALAALRCLEVLQASDNALENVDGVANLPRLQ----ELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.6 bits (154), Expect = 1e-10
 Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 6/155 (3%)

Query: 62  DENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDI 121
           ++  +  FS L        A+ +   +  +L        +    +L   +K++T L    
Sbjct: 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CH 458

Query: 122 FKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNL 181
            +    +  L+L  N +  L       +  L+VL    N +  +D     NL  L+ L L
Sbjct: 459 LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDG--VANLPRLQELLL 515

Query: 182 DHNQLINLTR-AIFNNVPNLRSLDISGNNISILPS 215
            +N+L          + P L  L++ GN++     
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 77.1 bits (189), Expect = 2e-15
 Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 1/94 (1%)

Query: 93  SPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKL 152
           S  +  G   +  + + + + +  L     +G  +L +L +  + +  +    F + P+L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
             L+L  N +  +  +  + L SL+ L L  N L
Sbjct: 83  SRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 72.5 bits (177), Expect = 7e-14
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 146 FQYVPKLQVLDLGSN-DVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLD 204
                 L  L + +   + +++    + L  LR L +  + L  +    F+  P L  L+
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86

Query: 205 ISGNNISILPSGVFSDLRKLQTFYANSNRFQ 235
           +S N +  L       L  LQ    + N   
Sbjct: 87  LSFNALESLSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 69.8 bits (170), Expect = 7e-13
 Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 2/89 (2%)

Query: 167 PEIFKNLTSLRILNLDHNQLI-NLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQ 225
                   +L  L +++ Q + +L       +  LR+L I  + +  +    F    +L 
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 226 TFYANSNRFQMFPKDLFAEMKYLQVIKIS 254
               + N  +         +  LQ + +S
Sbjct: 84  RLNLSFNALESLSWKTVQGLS-LQELVLS 111

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 63.6 bits (154), Expect = 7e-11
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 5/111 (4%)

Query: 299 TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNK-LKYLPENLFESLKELYTLNLKNNQL 357
           ++ +                  + L +L ++  + L++L       L EL  L +  + L
Sbjct: 10  SSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 358 ENIT--SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFD 406
             +   +      L+ L+LS+N LE ++     GL SL  + LS N L   
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLHCS 118

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 61.7 bits (149), Expect = 2e-10
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 6/105 (5%)

Query: 352 LKNNQLENITSLVGLSGLNSLDLS-WNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQY 410
            ++  L+++  L G   L  L +     L+ + L    GL  L  + +  + L F     
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD- 74

Query: 411 GYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF 455
                     L  +NLS+N + SL    +  + SL+EL L  N  
Sbjct: 75  ---AFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 60.5 bits (146), Expect = 5e-10
 Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 3/88 (3%)

Query: 194 FNNVPNLRSLDISGNN-ISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIK 252
                NL  L I     +  L       L +L+      +  +    D F     L  + 
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86

Query: 253 ISYHKDSLKELPSGLFANLPLLNTVILG 280
           +S++   L+ L       L L   V+ G
Sbjct: 87  LSFNA--LESLSWKTVQGLSLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.0 bits (142), Expect = 2e-09
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%)

Query: 292 FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN 351
              + N+T + +   + L  L     R   +L  L + ++ L+++  + F     L  LN
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86

Query: 352 LKNNQLENI--TSLVGLSGLNSLDLSWNQL 379
           L  N LE++   ++ GLS L  L LS N L
Sbjct: 87  LSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.6 bits (141), Expect = 3e-09
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 320 CKKLVKLELQRNKLKYLPENL--FESLKELYTLNLKNNQLENIT--SLVGLSGLNSLDLS 375
                 L   R+       +L   E+L ELY  N     L+++    L GL  L +L + 
Sbjct: 7   PHGSSGLRCTRDGALDSLHHLPGAENLTELYIEN--QQHLQHLELRDLRGLGELRNLTIV 64

Query: 376 WNQLEQINLIAFDGLSSLNTVDLSHNLLT 404
            + L  +   AF     L+ ++LS N L 
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.3 bits (135), Expect = 1e-08
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 16/129 (12%)

Query: 415 LKQCVNLETINLSYNR-ISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLD 473
           L    NL  + +   + +  L    +  +  L+ L +  +   F+             L+
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86

Query: 474 LSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKK 533
           LSFN +  +  +T++                 S   ++L+ NP+ C+C+   L R+  + 
Sbjct: 87  LSFNALESLSWKTVQ---------------GLSLQELVLSGNPLHCSCALRWLQRWEEEG 131

Query: 534 MTKTVYQML 542
           +     Q L
Sbjct: 132 LGGVPEQKL 140

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 70.8 bits (174), Expect = 2e-14
 Identities = 24/139 (17%), Positives = 60/139 (43%), Gaps = 9/139 (6%)

Query: 317 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSW 376
           + +  +  +L+L+  K+  + ENL  +L +   ++  +N++  +     L  L +L ++ 
Sbjct: 15  YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNN 73

Query: 377 NQLEQINLIAFDGLSSLNTVDLSHNLLT-FDEYQYGYSPLKQCVNLETINLSYNRISSLF 435
           N++ +I       L  L  + L++N L    +       L    +L  + +  N +++  
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDP----LASLKSLTYLCILRNPVTNKK 129

Query: 436 DDW---ISSMTSLKELDLR 451
                 I  +  ++ LD +
Sbjct: 130 HYRLYVIYKVPQVRVLDFQ 148

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 27/133 (20%), Positives = 50/133 (37%), Gaps = 10/133 (7%)

Query: 350 LNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQ 409
           + L    +E             LDL   ++  I  +    L   + +D S N +   +  
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLDG- 59

Query: 410 YGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNK 469
                      L+T+ ++ NRI  + +    ++  L EL L +N+   + D LD + S K
Sbjct: 60  -----FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD-LDPLASLK 113

Query: 470 L--TLDLSFNQIA 480
               L +  N + 
Sbjct: 114 SLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 9/121 (7%)

Query: 97  FDGLHFVKHILLSHNK--EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQV 154
           +      + + L   K   I  L   +     Q ++++   N I +L    F  + +L+ 
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGATL----DQFDAIDFSDNEIRKL--DGFPLLRRLKT 68

Query: 155 LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTR-AIFNNVPNLRSLDISGNNISIL 213
           L + +N +  +   + + L  L  L L +N L+ L       ++ +L  L I  N ++  
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 128

Query: 214 P 214
            
Sbjct: 129 K 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 58.5 bits (142), Expect = 4e-10
 Identities = 20/101 (19%), Positives = 46/101 (45%), Gaps = 8/101 (7%)

Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
           +   L+LRG  I  +   +   + +   +D   N++  +  + F  L  L+ L +++N++
Sbjct: 20  RDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRI 76

Query: 187 INLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
             +   +   +P+L  L ++ N++  L      DL  L + 
Sbjct: 77  CRIGEGLDQALPDLTELILTNNSLVEL-----GDLDPLASL 112

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 5/103 (4%)

Query: 131 LNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLT 190
           + L    I +     +    + + LDL    +  ++  +   L     ++   N++  L 
Sbjct: 2   VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD 58

Query: 191 RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
              F  +  L++L ++ N I  +  G+   L  L      +N 
Sbjct: 59  --GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS 99

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 27/111 (24%)

Query: 97  FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD 156
           F  L  +K +L+++N+ I  + + + +  P L  L L  NS+ EL               
Sbjct: 60  FPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNSLVEL--------------- 103

Query: 157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLT---RAIFNNVPNLRSLD 204
               D+     +   +L SL  L +  N + N       +   VP +R LD
Sbjct: 104 ---GDL-----DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 32/153 (20%)

Query: 154 VLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISIL 213
           ++ L +  +       + N    R L+L   + I +   +   +    ++D S N I  L
Sbjct: 1   MVKLTAELIE--QAAQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKL 57

Query: 214 PSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPL 273
               F  LR+L+T   N+NR                          +  +  GL   LP 
Sbjct: 58  DG--FPLLRRLKTLLVNNNR--------------------------ICRIGEGLDQALPD 89

Query: 274 LNTVILGESSIAELPS-DLFWNSTNITNIVLTG 305
           L  +IL  +S+ EL   D   +  ++T + +  
Sbjct: 90  LTELILTNNSLVELGDLDPLASLKSLTYLCILR 122

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 67.3 bits (165), Expect = 3e-13
 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 5/97 (5%)

Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-- 364
           K L S+P+ +    + L    L  N++  L   +F+ L +L  L+L NNQL  + + V  
Sbjct: 19  KSLASVPTGIPTTTQVL---YLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 75

Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
            L+ L  L L+ NQL+ I   AFD L SL  + L +N
Sbjct: 76  KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 27/80 (33%), Positives = 44/80 (55%)

Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI 212
           QVL L  N +  ++P +F  LT L  L+LD+NQL  L   +F+ +  L  L ++ N +  
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92

Query: 213 LPSGVFSDLRKLQTFYANSN 232
           +P G F +L+ L   +  +N
Sbjct: 93  IPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 25/78 (32%), Positives = 42/78 (53%)

Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
           T+ ++L L  NQ+  L   +F+ +  L  LD+  N +++LP+GVF  L +L     N N+
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89

Query: 234 FQMFPKDLFAEMKYLQVI 251
            +  P+  F  +K L  I
Sbjct: 90  LKSIPRGAFDNLKSLTHI 107

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 4/97 (4%)

Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
           SL  +P+G+     +L    L ++ I +L   +F   T +T + L  + +LT LP+ +F 
Sbjct: 20  SLASVPTGIPTTTQVLY---LYDNQITKLEPGVFDRLTQLTRLDL-DNNQLTVLPAGVFD 75

Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
              +L +L L  N+LK +P   F++LK L  + L NN
Sbjct: 76  KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 42.6 bits (101), Expect = 9e-05
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
           L  N+ IT L   +F    QL  L+L  N +T L +GVF  + +L  L L  N +  +  
Sbjct: 37  LYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR 95

Query: 168 EIFKNLTSLRILNLDHN 184
             F NL SL  + L +N
Sbjct: 96  GAFDNLKSLTHIWLLNN 112

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 72.2 bits (176), Expect = 4e-13
 Identities = 92/607 (15%), Positives = 184/607 (30%), Gaps = 152/607 (25%)

Query: 155 LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILP 214
           +D  + +  Y   +I        + N D   + ++ ++I +       +D    +I +  
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK----EEID----HIIMSK 58

Query: 215 SGVFSDLRKLQTFYA-NSNRFQMFPKDLFAEMKYLQVIKISYHKDSL-KELPSGLFANL- 271
             V   LR   T  +      Q F +++   + Y + +      +     + + ++    
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVL-RINY-KFLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 272 -PLLNTV-------ILGESSIAELPSDLFWNSTNITNIVLTGHK---KLTSLPSTLFRDC 320
             L N         +       +L   L        N+++ G     K T +   +    
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALL-ELRPAKNVLIDGVLGSGK-TWVALDVCLSY 174

Query: 321 KKLVKLELQRNKLKYL-------PENLFESLKELYTLNLKN-NQLENITSLVGLSGLNSL 372
           K   K++    K+ +L       PE + E L++L      N     + +S + L  ++S+
Sbjct: 175 KVQCKMD---FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-IHSI 230

Query: 373 D------LSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL 426
                  L     E   L+    + +    +       F+           C  L T   
Sbjct: 231 QAELRRLLKSKPYEN-CLLVLLNVQNAKAWN------AFN---------LSCKILLT--- 271

Query: 427 SYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRT 486
              R   + D   ++ T    + L H++ +  PD++ S++   L            DL  
Sbjct: 272 --TRFKQVTDFLSAATT--THISLDHHSMTLTPDEVKSLLLKYLDCRPQ-------DL-- 318

Query: 487 LEIKAAAQDPNEDST-------MVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVY 539
                    P E  T       ++A S     + D        N+  +     K+T  + 
Sbjct: 319 ---------PREVLTTNPRRLSIIAES-----IRDGL--ATWDNWKHVNC--DKLTTIIE 360

Query: 540 QMLELVTDNL--ECFGNAGVGINSVRPENLTCDTKPCPARCYCNF---SPYYSIMSV--N 592
             L ++      + F        SV P +        P               +M V   
Sbjct: 361 SSLNVLEPAEYRKMFDRL-----SVFPPSA-----HIPTILLSLIWFDVIKSDVMVVVNK 410

Query: 593 CSSASLT--HMPD---YLPVTYEDKKATSIQLI-LHNNSINHFLESPPESYKLITDLDLS 646
               SL      +    +P  Y + K        LH + ++H        Y +    D  
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH--------YNIPKTFDSD 462

Query: 647 YNNISHVDT-MYPYLN-HLELID------------------SEKIICHGSTKPLNGILLK 686
                ++D   Y ++  HL+ I+                   +KI    +    +G +L 
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522

Query: 687 NIQNTKT 693
            +Q  K 
Sbjct: 523 TLQQLKF 529

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 6e-05
 Identities = 58/375 (15%), Positives = 108/375 (28%), Gaps = 125/375 (33%)

Query: 62  DENFISLF---SKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLH 118
           +    + F    K+ +TT               LS           HI L H+     L 
Sbjct: 255 NAKAWNAFNLSCKILLTTRFK-------QVTDFLSAAT------TTHISLDHHSM--TLT 299

Query: 119 KDIFKGTPQLESLNL----RGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLT 174
            D        E  +L          +L        P+ +VL   +     +  E  ++  
Sbjct: 300 PD--------EVKSLLLKYLDCRPQDL--------PR-EVLT-TNPRRLSIIAESIRDGL 341

Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234
           +    N  H     LT  I          + S   +++L     ++ RK+   +   +R 
Sbjct: 342 A-TWDNWKHVNCDKLTTII----------ESS---LNVLEP---AEYRKM---F---DRL 378

Query: 235 QMFPKDL----------FAEMKYLQVIKI--SYHKDSL--KELPSGLFANLPLLNTVILG 280
            +FP             + ++    V+ +    HK SL  K+                  
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI------------ 426

Query: 281 ESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENL 340
             SI  +  +L     N   +    H+ +                ++       +  ++L
Sbjct: 427 --SIPSIYLELKVKLENEYAL----HRSI----------------VDHYNIPKTFDSDDL 464

Query: 341 FESLKELYTLN-----LKN-NQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLN 394
                + Y  +     LKN    E +T    +     LD  +  LEQ   I  D  +   
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV----FLDFRF--LEQ--KIRHDSTAWNA 516

Query: 395 TVDLSHNLLTFDEYQ 409
           +  + + L     Y+
Sbjct: 517 SGSILNTLQQLKFYK 531

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 66.1 bits (162), Expect = 7e-13
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV-- 364
            +L S+P+ +  D ++L    L  N++  L   +F+ L  L  L   +N+L  I + V  
Sbjct: 22  IRLASVPAGIPTDKQRL---WLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD 78

Query: 365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
            L+ L  LDL+ N L+ I   AFD L SL  + L +N
Sbjct: 79  KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 57.6 bits (140), Expect = 7e-10
 Identities = 27/80 (33%), Positives = 43/80 (53%)

Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN 188
           + L L  N IT+L  GVF ++  LQ L   SN +  +   +F  LT L  L+L+ N L +
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95

Query: 189 LTRAIFNNVPNLRSLDISGN 208
           + R  F+N+ +L  + +  N
Sbjct: 96  IPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 57.6 bits (140), Expect = 7e-10
 Identities = 23/80 (28%), Positives = 45/80 (56%)

Query: 153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI 212
           Q L L +N +  ++P +F +L +L+ L  + N+L  +   +F+ +  L  LD++ N++  
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95

Query: 213 LPSGVFSDLRKLQTFYANSN 232
           +P G F +L+ L   Y  +N
Sbjct: 96  IPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 24/78 (30%), Positives = 42/78 (53%)

Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
           T  + L L++NQ+  L   +F+++ NL+ L  + N ++ +P+GVF  L +L     N N 
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92

Query: 234 FQMFPKDLFAEMKYLQVI 251
            +  P+  F  +K L  I
Sbjct: 93  LKSIPRGAFDNLKSLTHI 110

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 318
            L  +P+G+  +   L    L  + I +L   +F +  N+  +      KLT++P+ +F 
Sbjct: 23  RLASVPAGIPTDKQRLW---LNNNQITKLEPGVFDHLVNLQQLYF-NSNKLTAIPTGVFD 78

Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 355
              +L +L+L  N LK +P   F++LK L  + L NN
Sbjct: 79  KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
           L++N+ IT L   +F     L+ L    N +T + +GVF  + +L  LDL  N +  +  
Sbjct: 40  LNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR 98

Query: 168 EIFKNLTSLRILNLDHN 184
             F NL SL  + L +N
Sbjct: 99  GAFDNLKSLTHIYLYNN 115

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 68.4 bits (167), Expect = 3e-12
 Identities = 65/407 (15%), Positives = 135/407 (33%), Gaps = 50/407 (12%)

Query: 126 PQLESLNLRG-NSITELY-SGVFQYVPKLQVLDLGSNDVAYMDP----EIFKNLTSLRIL 179
             LE+L L   +  T      +  +  K++ L +  +  +  D     E+ ++ TSL +L
Sbjct: 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVL 197

Query: 180 NLDHNQLINLT----RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ 235
           N    +   ++      I  N  +L S+ +    I +   G F     L+ F   S    
Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNED 256

Query: 236 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVIL-GESSIAELPSDLFWN 294
           +   + +  + + + +               LF     +  + L       E    L   
Sbjct: 257 IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK 316

Query: 295 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN------------LFE 342
             N+  +          L   L + CK+L +L ++R   +   E+            L +
Sbjct: 317 CPNLEVLETRNVIGDRGL-EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375

Query: 343 SLKELYTLNLKNNQLEN------ITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSL--N 394
             +EL  + +  + + N       T L  L     + L   +    +L   +G+ SL   
Sbjct: 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD-REERITDLPLDNGVRSLLIG 434

Query: 395 TVDLSHNLLTFDEYQYGYSPLKQ----CVNLETINLSYNRISSLFDDWI----SSMTSLK 446
              L        +       L        N+  + L Y   S   D+ +        +L+
Sbjct: 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES---DEGLMEFSRGCPNLQ 491

Query: 447 ELDLRHNNFSFIPDQLDSIVSN--KLT-LDLSFNQIAIVDLRTLEIK 490
           +L++R   FS     + + V+    L  L +   + ++     +++ 
Sbjct: 492 KLEMRGCCFS--ERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMA 536

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.8 bits (129), Expect = 1e-07
 Identities = 50/446 (11%), Positives = 126/446 (28%), Gaps = 92/446 (20%)

Query: 55  FTFCPLPDENFISLFSKLNIT-------------------TINTLAFSNSPSNVGVLSPP 95
            +     D+    + + +                      T   +  +   +        
Sbjct: 11  LSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSR 70

Query: 96  YFDGLHFVKHILLSHNKEITGLH--------------KDIFKGTPQLESLNLRGNSIT-- 139
            F  L   + + L         +               +I     QL+S++ R   ++  
Sbjct: 71  RFPNL---RSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDL 127

Query: 140 ELYSGVFQYVPKLQVLDLGS----NDVAYMDPEIFKNLTSLRILNLDHNQLINLT----R 191
           +L          L+ L L           +   I  +   ++ L ++ +           
Sbjct: 128 DLDRLAKARADDLETLKLDKCSGFTTDGLL--SIVTHCRKIKTLLMEESSFSEKDGKWLH 185

Query: 192 AIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVI 251
            +  +  +L  L+      + +      DL                   +    + L  +
Sbjct: 186 ELAQHNTSLEVLNFYMTEFAKIS---PKDLET-----------------IARNCRSLVSV 225

Query: 252 KISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTS 311
           K+   +        G F     L     G  +      + + N      +   G   +  
Sbjct: 226 KVGDFEIL---ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP 282

Query: 312 LP-STLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLN 370
                LF    ++ KL+L    L    E+    +++   L     ++    +++G  GL 
Sbjct: 283 NEMPILFPFAAQIRKLDLLYALL--ETEDHCTLIQKCPNL-----EVLETRNVIGDRGLE 335

Query: 371 SLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNR 430
            L     QL+++ +   +  +    ++    L++        +  + C  LE + +  + 
Sbjct: 336 VLAQYCKQLKRLRI---ERGADEQGMEDEEGLVSQRGLI---ALAQGCQELEYMAVYVSD 389

Query: 431 ISSLFDDWISSMTS----LKELDLRH 452
           I+   ++ + S+ +    L +  L  
Sbjct: 390 IT---NESLESIGTYLKNLCDFRLVL 412

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.8 bits (116), Expect = 5e-06
 Identities = 53/327 (16%), Positives = 99/327 (30%), Gaps = 30/327 (9%)

Query: 121 IFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILN 180
           I +    L S+ +    I EL  G F+    L+    GS +     PE + NL   R L 
Sbjct: 215 IARNCRSLVSVKVGDFEILEL-VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273

Query: 181 LDHNQLINLT--RAIFNNVPNLRSLDISGNNISILPS-GVFSDLRKLQTFYANSNRFQMF 237
                 +       +F     +R LD+    +       +      L+     +      
Sbjct: 274 RLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRG 333

Query: 238 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 297
            + L    K L+ ++I    D           +   L  +  G   +  +   ++ +  +
Sbjct: 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM--AVYVS--D 389

Query: 298 ITNIVL----TGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 353
           ITN  L    T  K L      L    +++  L L          +L    K+L      
Sbjct: 390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN-----GVRSLLIGCKKLRRFAFY 444

Query: 354 NNQ-------LENITSLVGLSGLNSLDLSWNQLEQINLIAF-DGLSSLNTVDLSHNLLTF 405
             Q       L  I        +  + L +       L+ F  G  +L  +++     + 
Sbjct: 445 LRQGGLTDLGLSYIGQ--YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502

Query: 406 DEYQYGYSPLKQCVNLETINLSYNRIS 432
                    + +  +L  + +   R S
Sbjct: 503 RAIAAA---VTKLPSLRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.4 bits (115), Expect = 6e-06
 Identities = 60/345 (17%), Positives = 125/345 (36%), Gaps = 61/345 (17%)

Query: 170 FKNLTSLRILNLDHNQLINLT------------RAIFNNVPNLRSLDISGNNISILPSGV 217
           F NL SL++       + NL               I NN+  L+S+      +S      
Sbjct: 72  FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVS------ 125

Query: 218 FSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTV 277
             DL +L                  A    L+ +K+        +    +  +   + T+
Sbjct: 126 DLDLDRL----------------AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169

Query: 278 ILGESSIAELP----SDLFWNSTNIT--NIVLTGHKKLTSLP-STLFRDCKKLVKLELQR 330
           ++ ESS +E       +L  ++T++   N  +T   K++     T+ R+C+ LV +++  
Sbjct: 170 LMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229

Query: 331 NKLKYLPE--NLFESLKELYTLNLKNNQ--LENITSLVGLSGLNSLDLSWNQLEQINLIA 386
            ++  L        +L+E    +L  +    E   +LV    L  L LS+    ++ ++ 
Sbjct: 230 FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL- 288

Query: 387 FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLK 446
           F   + +  +DL + LL  ++     + +++C NLE +           +        LK
Sbjct: 289 FPFAAQIRKLDLLYALLETED---HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK 345

Query: 447 ELDLRHNNFSFIPDQLDSIVSNK------------LTLDLSFNQI 479
            L +         +  + +VS +              + +  + I
Sbjct: 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI 390

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 14/125 (11%)

Query: 100 LHFVKHILLSHNKEITGLHKD-----IFKGTPQLESLNLRGNS--IT-ELYSGVFQYVPK 151
           L   + +LL   + IT L  D     +  G  +L           +T    S + QY P 
Sbjct: 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN 464

Query: 152 LQVLDLGSNDVAYMDP---EIFKNLTSLRILNLDHNQLINLT-RAIFNNVPNLRSLDISG 207
           ++ + LG    +  D    E  +   +L+ L +           A    +P+LR L + G
Sbjct: 465 VRWMLLGYVGES--DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522

Query: 208 NNISI 212
              S+
Sbjct: 523 YRASM 527

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 9/137 (6%)

Query: 318 RDCKKLVKLELQRNKLKYLP-ENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSW 376
           R    + +L L  ++      E L +  +EL  L+  N  L +I +L  L+ L  L+LS 
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSD 73

Query: 377 NQLEQINLIAFDGLSSLNTVDLSHNLLT-FDEYQYGYSPLKQCVNLETINLSYNRISSLF 435
           N++     +  +   +L  ++LS N +      +    PLK+  NL++++L    +++L 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIE----PLKKLENLKSLDLFNCEVTNLN 129

Query: 436 DDW---ISSMTSLKELD 449
           D        +  L  LD
Sbjct: 130 DYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 15/143 (10%)

Query: 319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQ 378
           +  + + LEL+              +KEL   N ++N+ +          L  L      
Sbjct: 2   EMGRRIHLELRNRT--------PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG 53

Query: 379 LEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD-D 437
           L  I       L+ L  ++LS N ++           ++C NL  +NLS N+I  L   +
Sbjct: 54  LTSIAN--LPKLNKLKKLELSDNRVS----GGLEVLAEKCPNLTHLNLSGNKIKDLSTIE 107

Query: 438 WISSMTSLKELDLRHNNFSFIPD 460
            +  + +LK LDL +   + + D
Sbjct: 108 PLKKLENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 12/140 (8%)

Query: 71  KLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHN--KEITGLHKDIFKGTPQL 128
               + +  L   NS SN G L     D    ++ +   +     I  L K       +L
Sbjct: 13  NRTPSDVKELVLDNSRSNEGKL-EGLTDEFEELEFLSTINVGLTSIANLPK-----LNKL 66

Query: 129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYM-DPEIFKNLTSLRILNLDHNQLI 187
           + L L  N ++     + +  P L  L+L  N +  +   E  K L +L+ L+L + ++ 
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

Query: 188 NLT---RAIFNNVPNLRSLD 204
           NL      +F  +P L  LD
Sbjct: 127 NLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 4/104 (3%)

Query: 127 QLESLNLRGNSITELYS-GVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
            ++ L L  +   E    G+     +L+ L   +  +  +       L  L+ L L  N+
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNR 75

Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPS-GVFSDLRKLQTFY 228
           +      +    PNL  L++SGN I  L +      L  L++  
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 317 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ---LENITSLVGLSGLNSLD 373
                KL KLEL  N++    E L E    L  LNL  N+   L  I  L  L  L SLD
Sbjct: 60  LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119

Query: 374 LSWNQLEQIN 383
           L   ++  +N
Sbjct: 120 LFNCEVTNLN 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 6/122 (4%)

Query: 169 IFKNLTSLRILNLDHNQLINLT-RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF 227
             +  + ++ L LD+++        + +    L  L      ++ +       L KL+  
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKL 69

Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHK-DSLKELPSGLFANLPLLNTVILGESSIAE 286
             + NR     + L  +   L  + +S +K   L  +       L  L ++ L    +  
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP--LKKLENLKSLDLFNCEVTN 127

Query: 287 LP 288
           L 
Sbjct: 128 LN 129

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 60.9 bits (148), Expect = 5e-11
 Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 9/139 (6%)

Query: 318 RDCKKLVKLELQRNKLKYLP-ENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSW 376
           R    + +L L   K      E L      L  L+L N  L ++++L  L  L  L+LS 
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSE 80

Query: 377 NQLEQINLIAFDGLSSLNTVDLSHNLLT-FDEYQYGYSPLKQCVNLETINLSYNRISSLF 435
           N++     +  + L +L  ++LS N L      +    PLK+   L++++L    +++L 
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLE----PLKKLECLKSLDLFNCEVTNLN 136

Query: 436 DDW---ISSMTSLKELDLR 451
           D        +  L  LD  
Sbjct: 137 DYRESVFKLLPQLTYLDGY 155

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 60.5 bits (147), Expect = 7e-11
 Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 7/130 (5%)

Query: 325 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINL 384
            ++++R     L      +++EL   N K+N  +          L  L L    L  ++ 
Sbjct: 7   GMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS- 65

Query: 385 IAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD-DWISSMT 443
                L  L  ++LS N +            ++  NL  +NLS N++  +   + +  + 
Sbjct: 66  -NLPKLPKLKKLELSENRIFGGLDMLA----EKLPNLTHLNLSGNKLKDISTLEPLKKLE 120

Query: 444 SLKELDLRHN 453
            LK LDL + 
Sbjct: 121 CLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 56.7 bits (137), Expect = 1e-09
 Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 8/139 (5%)

Query: 70  SKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLE 129
                  +  L   N  SN G +          ++ + L +   +  +        P+L+
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVG-LISV--SNLPKLPKLK 74

Query: 130 SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP-EIFKNLTSLRILNLDHNQLIN 188
            L L  N I      + + +P L  L+L  N +  +   E  K L  L+ L+L + ++ N
Sbjct: 75  KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134

Query: 189 LT---RAIFNNVPNLRSLD 204
           L     ++F  +P L  LD
Sbjct: 135 LNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 6/127 (4%)

Query: 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDV 162
           V+ ++L + K   G  + +      LE L+L    +  +       +PKL+ L+L  N +
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRI 83

Query: 163 AYMDPEIFKNLTSLRILNLDHNQLINLTR-AIFNNVPNLRSLDISGNNISILP---SGVF 218
                 + + L +L  LNL  N+L +++       +  L+SLD+    ++ L      VF
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF 143

Query: 219 SDLRKLQ 225
             L +L 
Sbjct: 144 KLLPQLT 150

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 4/105 (3%)

Query: 126 PQLESLNLRGNSIT-ELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHN 184
             +  L L           G+      L+ L L +  +  +       L  L+ L L  N
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSEN 81

Query: 185 QLINLTRAIFNNVPNLRSLDISGNNISILPS-GVFSDLRKLQTFY 228
           ++      +   +PNL  L++SGN +  + +      L  L++  
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 154 VLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISIL 213
           VLD   ++   ++  +     +L  L+L +  LI++  +    +P L+ L++S N I   
Sbjct: 30  VLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG 86

Query: 214 PSGVFSDLRKLQTFYANSNRFQ 235
              +   L  L     + N+ +
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 317 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ---LENITSLVGLSGLNSLD 373
                KL KLEL  N++    + L E L  L  LNL  N+   +  +  L  L  L SLD
Sbjct: 67  LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126

Query: 374 LSWNQLEQIN 383
           L   ++  +N
Sbjct: 127 LFNCEVTNLN 136

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 58/347 (16%), Positives = 110/347 (31%), Gaps = 78/347 (22%)

Query: 175 SLRILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYA 229
           S+   +L  + +      ++   +  +  +++ + +SGN I    +   S+         
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLED-DSVKEIVLSGNTIGTEAARWLSEN-------- 55

Query: 230 NSNRFQMFPKDLFAEMKYLQVIKISYHK--DSLKELPSGLFANLPLLNTVILGESSIAEL 287
                        A  K L++ + S         E+P  L      L   +L    +  +
Sbjct: 56  ------------IASKKDLEIAEFSDIFTGRVKDEIPEALRL----LLQALLKCPKLHTV 99

Query: 288 PSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKL-----KYLPENLFE 342
              L  N         T  + L             L  L L  N L       +   L E
Sbjct: 100 --RLSDN-----AFGPTAQEPL----IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 148

Query: 343 SL--------KELYTLNLKNNQLENI------TSLVGLSGLNSLDLSWNQL--EQINLIA 386
                       L ++    N+LEN        +      L+++ +  N +  E I  + 
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208

Query: 387 FDGLS---SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSM- 442
            +GL+    L  +DL  N  T          LK   NL  + L+   +S+     +    
Sbjct: 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268

Query: 443 -----TSLKELDLRHNNFS-----FIPDQLDSIVSNKLTLDLSFNQI 479
                  L+ L L++N         +   +D  + + L L+L+ N+ 
Sbjct: 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 60.1 bits (146), Expect = 9e-10
 Identities = 57/325 (17%), Positives = 107/325 (32%), Gaps = 62/325 (19%)

Query: 128 LESLNLRGNSIT----ELYSGVFQYVPKLQVLDLGSNDV----AYMDPEIFKNLTSLRIL 179
           +E  +L+ ++IT    +    V      ++ + L  N +    A    E   +   L I 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 180 NLDHNQ-----------LINLTRAIFNNVPNLRSLDISGNNISILPSGV------FSDLR 222
                            L  L +A+    P L ++ +S N     P+         S   
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDNAFG--PTAQEPLIDFLSKHT 122

Query: 223 KLQTFYANSNRFQMFPKDLFAEM-KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGE 281
            L+  Y ++N          A   + L V K + +   L+ +      N        L  
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI--ICGRNR-------LEN 173

Query: 282 SSIAELPSDLFWNSTNITNIVLT----GHKKLTSLPSTLFRDCKKLVKLELQRNKL---- 333
            S+ E  +  F +   +  + +       + +  L       C++L  L+LQ N      
Sbjct: 174 GSMKEW-AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG 232

Query: 334 -KYLPENLFESLKELYTLNLKNNQLENI------TSLVGLS--GLNSLDLSWNQLEQINL 384
              L   L +S   L  L L +  L          +   L   GL +L L +N++E   +
Sbjct: 233 SSALAIAL-KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291

Query: 385 IAF-----DGLSSLNTVDLSHNLLT 404
                   + +  L  ++L+ N  +
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 21/104 (20%)

Query: 126 PQLESLNLRGNSIT----ELYSGVFQYVPKLQVLDLGSNDV----AYMDPEIFKNL---- 173
            +L+ L+L+ N+ T       +   +  P L+ L L    +    A     +        
Sbjct: 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA---AVVDAFSKLE 272

Query: 174 -TSLRILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNIS 211
              L+ L L +N++       L   I   +P+L  L+++GN  S
Sbjct: 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 29/133 (21%), Positives = 46/133 (34%), Gaps = 20/133 (15%)

Query: 122 FKGTPQLESLNLRGNSIT-----ELYSGVFQYVPKLQVLDLGSNDV----AYMDPEIFKN 172
           F+    L ++ +  N I       L      Y  +L+VLDL  N      +       K+
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242

Query: 173 LTSLRILNLDHNQL-----INLTRAIFNNV-PNLRSLDISGNNIS-----ILPSGVFSDL 221
             +LR L L+   L       +  A        L++L +  N I       L + +   +
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302

Query: 222 RKLQTFYANSNRF 234
             L     N NRF
Sbjct: 303 PDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 15/103 (14%)

Query: 123 KGTPQLESLNLRGNSITE----LYSGVFQYVPKLQVLDLGSND-----VAYMDPEIFKNL 173
           K  P L S+    N +       ++  FQ    L  + +  N      + ++  E     
Sbjct: 156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215

Query: 174 TSLRILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNIS 211
             L++L+L  N         L  A+ +  PNLR L ++   +S
Sbjct: 216 QELKVLDLQDNTFTHLGSSALAIALKSW-PNLRELGLNDCLLS 257

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 60.2 bits (146), Expect = 7e-10
 Identities = 48/311 (15%), Positives = 99/311 (31%), Gaps = 30/311 (9%)

Query: 165 MDPEIFKNLTSLRILNLDHNQLINLT--RAIFNNVPNLRSLDISGNNISILPSGV----F 218
           M  E   ++T L +        +N    R + +  P+L+ LDIS   I +          
Sbjct: 19  MTEEEANSITHLTL-----TGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPN 73

Query: 219 SDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVI 278
                    +  +  F      +    + L+ + +S   + +K +    F     L    
Sbjct: 74  GKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILS---EKIKNIEDAAFKGCDNLKICQ 130

Query: 279 LGESSIAELPSDLFWNSTNITNI---VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY 335
           + + +   L  +   +S     I       ++         F + + L         +  
Sbjct: 131 IRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQV-GAMGK 189

Query: 336 LPENLFESLKELYTLNLKN--NQLENI---TSLVGLSGLNSLDLSWNQLEQINLIAFDGL 390
           L + + ++  +   +N      +L+N         +  L SLD+S      I    F   
Sbjct: 190 LEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQK 249

Query: 391 SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLE-TINLSYNRISSLFDDWISSMTSLKELD 449
             L  + L HNL T      G      C  L  T+ L    ++++         +L+ + 
Sbjct: 250 KYLLKIKLPHNLKTI-----GQRVFSNCGRLAGTLELP-ASVTAIEFGAFMGCDNLRYVL 303

Query: 450 LRHNNFSFIPD 460
              +  + + D
Sbjct: 304 ATGDKITTLGD 314

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 57.1 bits (138), Expect = 7e-09
 Identities = 52/329 (15%), Positives = 104/329 (31%), Gaps = 24/329 (7%)

Query: 33  SSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISL---FSKLNITTINTLAFSNSPSNV 89
           S  G++   + E+       +T T   L  E+F  L   F  L +  I+           
Sbjct: 10  SKPGTLISMMTEEEANSITHLTLT-GKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA 68

Query: 90  GVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYV 149
           G     Y +G  ++           + +   + KG   LE + L    I  +    F+  
Sbjct: 69  GT----YPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVIL-SEKIKNIEDAAFKGC 123

Query: 150 PKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAI----FNNVPNLRSLDI 205
             L++  +       + PE   +  +   + L  +             F     L +   
Sbjct: 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQ 183

Query: 206 SGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKD---LFAEMKYLQVIKISYHKDSLKE 262
               +  L   +     + +     +   ++   D   +   M  L  + IS  K +   
Sbjct: 184 V-GAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDIS--KTNATT 240

Query: 263 LPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKK 322
           +P   FA    L  + L   ++  +   +F N   +   +      +T++    F  C  
Sbjct: 241 IPDFTFAQKKYLLKIKLP-HNLKTIGQRVFSNCGRLAGTL-ELPASVTAIEFGAFMGCDN 298

Query: 323 LVKLELQRNKLKYLPENLFE---SLKELY 348
           L  +    +K+  L + LF      K +Y
Sbjct: 299 LRYVLATGDKITTLGDELFGNGVPSKLIY 327

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 40/297 (13%), Positives = 94/297 (31%), Gaps = 31/297 (10%)

Query: 119 KDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGS----NDVAYMDPEIFKNLT 174
           + +    P L+ L++    I         Y      + + +       + +   + K   
Sbjct: 42  RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ 101

Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234
           +L  + L   ++ N+  A F    NL+   I       L     +D          S+  
Sbjct: 102 TLEKVIL-SEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDA 160

Query: 235 QMFPKDL----FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD 290
             F        F E + L+         ++ +L   +         +           +D
Sbjct: 161 YRFKNRWEHFAFIEGEPLETTIQV---GAMGKLEDEIMKAGLQPRDINFLTIEGKLDNAD 217

Query: 291 ---LFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFE---SL 344
              +     N+ ++ ++     T++P   F   K L+K++L  + LK + + +F     L
Sbjct: 218 FKLIRDYMPNLVSLDISK-TNATTIPDFTFAQKKYLLKIKL-PHNLKTIGQRVFSNCGRL 275

Query: 345 KELYTLNLKNNQLENITSL-----VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTV 396
                L        ++T++     +G   L  +  + +++  +    F        +
Sbjct: 276 AGTLELP------ASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 60.7 bits (147), Expect = 9e-10
 Identities = 53/375 (14%), Positives = 115/375 (30%), Gaps = 64/375 (17%)

Query: 121 IFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGS------NDVAYMDPEIFKNLT 174
           +    P L+SL L      E  + + Q  P+L+ L  G        DV            
Sbjct: 206 LVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCK 265

Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS-ILPSGVFSDLRKLQTFYANSNR 233
            LR L+   + +     A+++    L +L++S   +       +     KLQ  +     
Sbjct: 266 ELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI 325

Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSG--------LFANLPLLNTVILGESSIA 285
                + L +  K L+ +++   +  + E            +    P L +V+       
Sbjct: 326 EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF----- 380

Query: 286 ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLP-------- 337
                       +TN  L           T+ R+   + +  L   + K           
Sbjct: 381 ---------CRQMTNAALI----------TIARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421

Query: 338 ---ENLFESLKELYTLNLK----NNQLENITSLVGLSGLNSLDLSWNQLEQINLIAF-DG 389
                + E  K+L  L+L     +   E I +      +  L +++     + +     G
Sbjct: 422 IGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGT--YAKKMEMLSVAFAGDSDLGMHHVLSG 479

Query: 390 LSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSM-TSLKEL 448
             SL  +++              +   +   + ++ +S   +S         +   + +L
Sbjct: 480 CDSLRKLEIRDCPFGDKA---LLANASKLETMRSLWMSSCSVS---FGACKLLGQKMPKL 533

Query: 449 DLRHNNFSFIPDQLD 463
           ++   +    PD   
Sbjct: 534 NVEVIDERGAPDSRP 548

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 56/378 (14%), Positives = 128/378 (33%), Gaps = 50/378 (13%)

Query: 121 IFKGTPQLESLNLRG-NSITEL-YSGVFQYVPKLQVLDLGSNDVAYMDPE----IFKNLT 174
           I K     + L L      +    + +      L+ LDL  +DV  +            T
Sbjct: 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184

Query: 175 SLRILNL-DHNQLINLT--RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTF---- 227
           SL  LN+      ++ +    +    PNL+SL ++        + +     +L+      
Sbjct: 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244

Query: 228 YANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI-AE 286
           Y    R  ++     A     ++  +S   D++      +++    L T+ L  +++ + 
Sbjct: 245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY 304

Query: 287 LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN------- 339
               L      +  + +  + +   L   L   CK L +L +  ++   +  N       
Sbjct: 305 DLVKLLCQCPKLQRLWVLDYIEDAGL-EVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363

Query: 340 ---LFESLKELYTLNLKNNQL--ENITSLV-GLSGLNSLDLSWNQLEQINLIAFD----- 388
              +     +L ++     Q+    + ++      +    L   + +  + +  +     
Sbjct: 364 LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG 423

Query: 389 ------GLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWI--- 439
                     L  + LS  LLT   ++Y          +E +++++   S   D  +   
Sbjct: 424 FGAIVEHCKDLRRLSLSG-LLTDKVFEYI---GTYAKKMEMLSVAFAGDS---DLGMHHV 476

Query: 440 -SSMTSLKELDLRHNNFS 456
            S   SL++L++R   F 
Sbjct: 477 LSGCDSLRKLEIRDCPFG 494

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 52/322 (16%), Positives = 100/322 (31%), Gaps = 73/322 (22%)

Query: 168 EIFKNLTSLRILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLR 222
           E       +  L+L  N L     + L +A  N   ++ SL++SGN++            
Sbjct: 16  EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG--FKNS----- 68

Query: 223 KLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES 282
                            D   ++       ++    ++  L          L+   L   
Sbjct: 69  -----------------DELVQI-------LAAIPANVTSL---------NLSGNFLSYK 95

Query: 283 SIAELPSDLFWNSTNITNIVLT----GHKKLTSLPSTLFRDCKKLVKLELQRNKL----- 333
           S  EL   L      IT + L       K  +            +  L L+ N L     
Sbjct: 96  SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS 155

Query: 334 KYLPENLFESLKELYTLNLKNNQLENI------TSLVGL-SGLNSLDLSWNQLEQINLIA 386
             L + L      + +LNL+ N L +         L  + + + SLDLS N L   +   
Sbjct: 156 DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE 215

Query: 387 F-DGL----SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDD---- 437
                    + + +++L  N L     +          +L+T+ L Y+ + ++  +    
Sbjct: 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKA 275

Query: 438 ---WISSMTSLKELDLRHNNFS 456
                 ++  +  +D       
Sbjct: 276 LGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 60/373 (16%), Positives = 110/373 (29%), Gaps = 83/373 (22%)

Query: 150 PKLQVLDLGSND-----VAYMDPEIFKNLTSLRILNLDHNQL-----INLTRAIFNNVPN 199
             +  LDL  N+        +         S+  LNL  N L       L + +     N
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 200 LRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDS 259
           + SL++SGN +S                            D   +        ++    +
Sbjct: 82  VTSLNLSGNFLS--YKSS----------------------DELVKT-------LAAIPFT 110

Query: 260 LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT----GHKKLTSLPST 315
           +  L   L  N            S +E          +IT++ L     G K    L   
Sbjct: 111 ITVL--DLGWN-------DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161

Query: 316 LFRDCKKLVKLELQRNKL-----KYLPENLFESLKELYTLNLKNNQLEN--ITSLVGL-- 366
           L      +  L L+ N L       L + L      + +L+L  N L       L  +  
Sbjct: 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221

Query: 367 ---SGLNSLDLSWNQLEQINLI----AFDGLSSLNTVDLSHNLL---TFDEYQYGYSPLK 416
              + + SL+L  N L   +L       D L  L TV L ++++   + ++ +   +   
Sbjct: 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP 281

Query: 417 QCVNLETINLSYNRISSLFDDWISSM-----TSLKELDLRHNNFSFIPDQLDSIVSNKLT 471
               +  ++ +   I       IS++            L +    F      +I    + 
Sbjct: 282 NIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIP 341

Query: 472 -----LDLSFNQI 479
                   +   +
Sbjct: 342 DELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 44/306 (14%), Positives = 98/306 (32%), Gaps = 52/306 (16%)

Query: 127 QLESLNLRGNSITE-----LYSGVFQYVPKLQVLDLGSND-----VAYMDPEIFKNLTSL 176
            + SLNL GNS+       L   +      +  L+L  N         +   +     ++
Sbjct: 52  SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111

Query: 177 RILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNIS-----ILPSGVFSDLRKLQT 226
            +L+L  N           +A  N   ++ SL++ GN++       L   + +    + +
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171

Query: 227 FYANSNRF-----QMFPKDLFAEMKYLQVIKISYHK---DSLKELPSGLFANLPLLNTVI 278
                N           K L +    +  + +S +     S  EL     +    + ++ 
Sbjct: 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231

Query: 279 LGESSI----AELPSDLFWNSTNITNIVLT-------GHKKLTSLPSTLFRDCKKLVKLE 327
           L  + +     E    L  +  ++  + L          ++  +L    F + +K++ ++
Sbjct: 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL-GAAFPNIQKIILVD 290

Query: 328 LQRNKL-----KYLPENLFESLKELYTLNLKNNQL-------ENITSLVGLSGLNSLDLS 375
               ++       +   + E   +    +L N  L        NI  L     L     +
Sbjct: 291 KNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQT 350

Query: 376 WNQLEQ 381
              L +
Sbjct: 351 CKPLLE 356

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 52/431 (12%), Positives = 130/431 (30%), Gaps = 79/431 (18%)

Query: 28  VENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPS 87
              +S  + SI     +        +  T   +  +        + +T+     FS+S  
Sbjct: 18  PIGASLEDFSIEQLPAKTIYALGENIDLTGLNVTGKYDDGKQRPVKVTSEQISGFSSSVP 77

Query: 88  NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQ 147
                     +G      + +S  +   G+   + +       + L  NS+  +    F+
Sbjct: 78  VDKQEVTITIEGKQKSFSVHISPVRVENGV---LTEILKGYNEIIL-PNSVKSIPKDAFR 133

Query: 148 YVPKLQVLDLGSNDVAYMDPEIFKN--LTSLRILNLDHNQLINLTRAIFNNVPNLRSLDI 205
              ++  + L    +  +    F N  +  +       + L  L   IF    NL+  D+
Sbjct: 134 NS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVF----PSTLEQLKEDIFYYCYNLKKADL 187

Query: 206 SGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPS 265
           S   I+ LP+            +  +                ++ + +     +LKE+ S
Sbjct: 188 SKTKITKLPAS----------TFVYAG---------------IEEVLLP---VTLKEIGS 219

Query: 266 GLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK 325
             F     L T+ +   +++ +  + F  S  IT + L     +T++ S  F  C +L +
Sbjct: 220 QAFLKTSQLKTIEIP-ENVSTIGQEAFRES-GITTVKL--PNGVTNIASRAFYYCPELAE 275

Query: 326 LEL-----QRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLE 380
           +         +    +     E   +L    +  +                       + 
Sbjct: 276 VTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-----------------------IR 312

Query: 381 QINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDD-WI 439
            +      G   +  + +  N+   +   +  +       ++ + +       +F+  W 
Sbjct: 313 ILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT------GIKEVKVEGTTPPQVFEKVWY 366

Query: 440 SSMTSLKELDL 450
                +  + +
Sbjct: 367 GFPDDITVIRV 377

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 36/209 (17%), Positives = 65/209 (31%), Gaps = 38/209 (18%)

Query: 258 DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 317
            +L++L   +F     L    L ++ I +LP+  F     I  ++L     L  + S  F
Sbjct: 166 STLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVY-AGIEEVLL--PVTLKEIGSQAF 222

Query: 318 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWN 377
               +L  +E+    +  + +  F                         SG+ ++ L  N
Sbjct: 223 LKTSQLKTIEIP-ENVSTIGQEAFRE-----------------------SGITTVKLP-N 257

Query: 378 QLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQY-GYSPLKQCVNLETINLSYNRISSLFD 436
            +  I   AF     L  V    +    D         L+ C  L    +  + I  L  
Sbjct: 258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQ 316

Query: 437 DWISSMTSLKELDLRHNNFSFIPDQLDSI 465
             +     + +L         IP  +  I
Sbjct: 317 GLLGGNRKVTQLT--------IPANVTQI 337

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 35/196 (17%), Positives = 63/196 (32%), Gaps = 37/196 (18%)

Query: 321 KKLVKLELQRNKL-----KYLPENLFESLKELYTLNLKNNQLENI------TSLVGLSGL 369
            +  KL LQ N L     K L + L     ++ TL L NN L           L G + +
Sbjct: 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSV 185

Query: 370 NSLDLSWNQLEQINLIAF-DGL---SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETIN 425
             L L    L    L      L     L  +++++N              ++  +LE ++
Sbjct: 186 THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLH 245

Query: 426 LSYNRISS----LFDDWISSMTSLKELDLRHNNFSFIPDQ--------------LDSIVS 467
           L +N +SS    +  D   +      + +     + + +                D    
Sbjct: 246 LYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARV 305

Query: 468 NK----LTLDLSFNQI 479
            +    L  DL  ++ 
Sbjct: 306 QRHLELLLRDLEDSRG 321

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 17/98 (17%)

Query: 128 LESLNLRGNSITE-----LYSGVFQYVPKLQVLDLGSNDVAYMDPE----IFKNLTSLRI 178
           L  LNL G  +T      + + +      L  ++L S  +   DP     +       R 
Sbjct: 74  LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL---DPAGLRTLLPVFLRARK 130

Query: 179 LNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNIS 211
           L L  N L      +L   + ++   + +L +S N ++
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT 168

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 18/100 (18%)

Query: 127 QLESLNLRGNSITE----LYSGVFQYVPKLQVLDLGSNDVAYMDP------EIFKNLTSL 176
           Q+ +L L  N +T     +          +  L L    +   D               L
Sbjct: 156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG--DEGLELLAAQLDRNRQL 213

Query: 177 RILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNIS 211
           + LN+ +N       + L RA   + P+L  L +  N +S
Sbjct: 214 QELNVAYNGAGDTAALALARAAREH-PSLELLHLYFNELS 252

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query: 199 NLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ 235
           +   L ++GNN++ LP G+   L  L+T +  +N ++
Sbjct: 32  DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 9/35 (25%), Positives = 14/35 (40%)

Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
                L L  N L  L   + + +P LR+  +  N
Sbjct: 31  VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSN 160
              L L GN++T L  G+   +P L+   LG+N
Sbjct: 33  TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 307 KKLT--SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 357
           + LT  SLP+    D     +L L  N L  LP  L ++L  L T +L  N  
Sbjct: 18  RGLTWASLPTAFPVD---TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 1e-04
 Identities = 31/171 (18%), Positives = 63/171 (36%), Gaps = 18/171 (10%)

Query: 265 SGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 324
           S +   +PLLN + +  ++   +           +  +++G    + +   L  D   L 
Sbjct: 165 SPVLDAMPLLNNLKIKGTNNLSIGKKP--RPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 325 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLE---Q 381
           KL L      Y  +      + L       ++  N         L  L +   + +    
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPL----FSKDRFPN---------LKWLGIVDAEEQNVVV 269

Query: 382 INLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS 432
              +  D L  L T+D+S  +LT +  +     + +  +L+ IN+ YN +S
Sbjct: 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 3e-04
 Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 16/102 (15%)

Query: 126 PQLESLNLR-------GNSITELYSGVFQ--YVPKLQVLDLGSNDVAYMDPEIF---KNL 173
           P LE L L         +    ++  +F     P L+ L +   +   +  E+F     L
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278

Query: 174 TSLRILNLDHNQLINL-TRAIFNNVP---NLRSLDISGNNIS 211
             L  +++    L +   R + ++V    +L+ +++  N +S
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 5e-04
 Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 17/158 (10%)

Query: 314 STLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG--LSGLNS 371
           S +      L  L+++      + +    +LK L  +         +  ++G  L  L  
Sbjct: 165 SPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSL-EIISGGLPDSVVEDILGSDLPNLEK 223

Query: 372 LDLSWNQLEQI---------NLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLE 422
           L L     +            L + D   +L  + +       +     +        LE
Sbjct: 224 LVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ-NVVVEMFLESDILPQLE 282

Query: 423 TINLSYNRIS----SLFDDWISSMTSLKELDLRHNNFS 456
           T+++S   ++     L  D +  +  LK +++++N  S
Sbjct: 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 17/139 (12%)

Query: 92  LSPPYFDGLHFVKHIL--LSHNKEITGLHKDIFKGTPQLESLNLRGNSITEL--YSGVFQ 147
           L     D     ++I   L+    +    + I +  P+L SLNL  N +  L   S + Q
Sbjct: 134 LKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQ 193

Query: 148 YVPKLQVLDLGSNDVAYMDP-EIFKNLTSLRILNLDHNQLINLT-------RAIFNNVPN 199
             P L++L+L  N++      +  K L  L  L LD N L +          AI    P 
Sbjct: 194 KAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPK 252

Query: 200 LRSLDISGNNISILPSGVF 218
           L  LD       + P   F
Sbjct: 253 LLRLD----GHELPPPIAF 267

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 40.8 bits (95), Expect = 8e-04
 Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 13/114 (11%)

Query: 370 NSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYN 429
            +LDL   + +    +A +    LN        L            +    L ++NLS N
Sbjct: 130 QALDLKGLRSDPDL-VAQNIDVVLNRRSCMAATLR--------IIEENIPELLSLNLSNN 180

Query: 430 RISSL--FDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLT-LDLSFNQIA 480
           R+  L      +    +LK L+L  N       +LD I   KL  L L  N + 
Sbjct: 181 RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLC 233

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 37/207 (17%), Positives = 67/207 (32%), Gaps = 42/207 (20%)

Query: 283 SIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFE 342
           S  + P    ++   + ++ L+      S    +   C KL  L L+  +L     N   
Sbjct: 80  SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA 139

Query: 343 SLKELYTLNLKNNQLENITS------LVGLSGLNSLDLSW-----------------NQL 379
               L  LNL        +       L   S L+ L+LSW                   +
Sbjct: 140 KNSNLVRLNLSG--CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197

Query: 380 EQINLIA-------------FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL 426
            Q+NL                    +L  +DLS +++  ++    +    Q   L+ ++L
Sbjct: 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND---CFQEFFQLNYLQHLSL 254

Query: 427 SY-NRISSLFDDWISSMTSLKELDLRH 452
           S    I       +  + +LK L +  
Sbjct: 255 SRCYDIIPETLLELGEIPTLKTLQVFG 281

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	693
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.98
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.88
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.86
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.85
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.85
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.84
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.83
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.81
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.81
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.79
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.71
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.68
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.67
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.66
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.63
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.63
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.52
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.42
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.34
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.32
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.25
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	99.16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.15
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.65
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.65
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.48
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.47
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.44
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.18
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.13
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.8
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.43
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.42
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	94.08
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	91.33

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.1e-58  Score=533.46  Aligned_cols=624  Identities=20%  Similarity=0.172  Sum_probs=368.2

Q ss_pred             EeccCCeEEEEecCCCCCCCccCCCCCCCCCccEEEEEcCCCCCccHHHHh-hhcCcccccEEEeecCCCCccCCCCccC
Q psy8029          19 EIDCSHFVGVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLF-SKLNITTINTLAFSNSPSNVGVLSPPYF   97 (693)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~c~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~i~~l~~~~~   97 (693)
                      ..|||.|.+|.|.  .             ++|+.|+++++.+... +..+. ....++.|+.++++.+  .+..++ ..|
T Consensus        36 ~~~~C~w~gv~C~--~-------------~~v~~L~L~~~~l~g~-~~~l~~~l~~L~~L~~l~~~~~--~~~~l~-~~~   96 (768)
T 3rgz_A           36 NKNPCTFDGVTCR--D-------------DKVTSIDLSSKPLNVG-FSAVSSSLLSLTGLESLFLSNS--HINGSV-SGF   96 (768)
T ss_dssp             TSCGGGSTTEEEE--T-------------TEEEEEECTTSCCCEE-HHHHHHHTTTCTTCCEEECTTS--CEEECC-CCC
T ss_pred             CCCCcCCcceEEC--C-------------CcEEEEECCCCCcCCc-cCccChhHhccCcccccCCcCC--CcCCCc-hhh
Confidence            4689999999995  1             4688889988887653 11111 2234566666666655  444433 457


Q ss_pred             CCcccccEEEccCCcCccccccc--ccCCCCCCcEEEeeCCcccc-cCcccCCCCCCCcEEEcCCCCCCccChhh---hC
Q psy8029          98 DGLHFVKHILLSHNKEITGLHKD--IFKGTPQLESLNLRGNSITE-LYSGVFQYVPKLQVLDLGSNDVAYMDPEI---FK  171 (693)
Q Consensus        98 ~~l~~L~~L~Ls~n~~i~~~~~~--~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~  171 (693)
                      +++++|++|+|++| .+++..+.  .++++++|++|++++|.+++ ++...+.++++|++|++++|.+++..+..   +.
T Consensus        97 ~~l~~L~~L~Ls~n-~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  175 (768)
T 3rgz_A           97 KCSASLTSLDLSRN-SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD  175 (768)
T ss_dssp             CCCTTCCEEECCSS-EEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTT
T ss_pred             ccCCCCCEEECCCC-cCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhc
Confidence            77777777777777 66653333  56677777777777777665 33333366777777777777776666555   56


Q ss_pred             CCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEE
Q psy8029         172 NLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVI  251 (693)
Q Consensus       172 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  251 (693)
                      ++++|++|++++|++++..+  +..+++|++|++++|.+++..+. +..+++|++|++++|.++...+..|..+++|++|
T Consensus       176 ~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  252 (768)
T 3rgz_A          176 GCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL  252 (768)
T ss_dssp             CCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE
T ss_pred             cCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE
Confidence            66666666666666655443  25566666666666666654444 5666666666666666665444555556666666


Q ss_pred             EEecCCCc--------------------cc-ccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCC
Q psy8029         252 KISYHKDS--------------------LK-ELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT  310 (693)
Q Consensus       252 ~l~~n~~~--------------------~~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~  310 (693)
                      ++++|.+.                    +. .+|...+..+++|++|++++|.+.+..+..|..+++|++|++++| .+.
T Consensus       253 ~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~  331 (768)
T 3rgz_A          253 NISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN-NFS  331 (768)
T ss_dssp             ECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS-EEE
T ss_pred             ECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCC-ccc
Confidence            66555532                    11 444443334467777777777776655566677777777777777 443


Q ss_pred             -cCChhhhcCCCCCcEEEccCCCCC-CCChhhhccCc-cCceEeccCCcCcc-ccCc-c--CCCCCCeEeCCCCcccccc
Q psy8029         311 -SLPSTLFRDCKKLVKLELQRNKLK-YLPENLFESLK-ELYTLNLKNNQLEN-ITSL-V--GLSGLNSLDLSWNQLEQIN  383 (693)
Q Consensus       311 -~l~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~-~L~~L~Ls~n~l~~-l~~~-~--~l~~L~~L~Ls~n~l~~~~  383 (693)
                       .+|...|..+++|++|++++|.++ .+|.. +..++ +|+.|++++|++++ ++.. .  .+++|++|++++|.+++..
T Consensus       332 ~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  410 (768)
T 3rgz_A          332 GELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI  410 (768)
T ss_dssp             EECCHHHHTTCTTCCEEECCSSEEEECCCTT-HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEEC
T ss_pred             CcCCHHHHhcCCCCCEEeCcCCccCccccHH-HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccccc
Confidence             677666677777777777777766 44443 33443 56666666665543 2221 1  1455666666666666655


Q ss_pred             ccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCccc
Q psy8029         384 LIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLD  463 (693)
Q Consensus       384 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  463 (693)
                      +..+..+++|++|++++|.+++.    .+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..+..+
T Consensus       411 p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l  486 (768)
T 3rgz_A          411 PPTLSNCSELVSLHLSFNYLSGT----IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL  486 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESC----CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             CHHHhcCCCCCEEECcCCcccCc----ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence            65666666666666666665543    23344445555555555555554444444445555555555555554444444


Q ss_pred             ccCCCccEEECCCCCCceeeccchhhhcccCC---CCCc-------cccccccCcEEEcCCCcccccCCcHHHHHHHhcc
Q psy8029         464 SIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQD---PNED-------STMVARSANIVILNDNPIACNCSNYDLIRFVSKK  533 (693)
Q Consensus       464 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~---~~~~-------~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~  533 (693)
                      ..+++|+.|++++|++++..+.++..++....   ....       .....++++.+++++|++.+.++..++.......
T Consensus       487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~  566 (768)
T 3rgz_A          487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA  566 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred             hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhh
Confidence            44444555555555544443333333221110   0000       0011256889999999998877654432110000


Q ss_pred             cccce-eeeeeeccCce--eecCC------CC---cccccc--------CCCCCcccCCCCCCCcEeeecCCCceEEEEc
Q psy8029         534 MTKTV-YQMLELVTDNL--ECFGN------AG---VGINSV--------RPENLTCDTKPCPARCYCNFSPYYSIMSVNC  593 (693)
Q Consensus       534 ~~~~~-~~~~~~~~~~~--~c~~~------~~---~~~~~l--------~~~~l~c~~~~cp~~~~~~~~~~~~l~~l~l  593 (693)
                      ..... ...........  .|...      .+   ..+..+        ..+.+....   |.    .+..+..++.+|+
T Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~---~~----~~~~l~~L~~LdL  639 (768)
T 3rgz_A          567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT---SP----TFDNNGSMMFLDM  639 (768)
T ss_dssp             CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC---CC----SCSSSBCCCEEEC
T ss_pred             hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC---ch----hhhccccccEEEC
Confidence            00000 00000000000  00000      00   000000        001111111   11    1334567899999


Q ss_pred             CCCCcc-cCCCCCCCCccccCceEEEEEecCCccccCCCCCCcccccCcEEEccCCccc-cccC---cCCCccEEEeeCC
Q psy8029         594 SSASLT-HMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNIS-HVDT---MYPYLNHLELIDS  668 (693)
Q Consensus       594 s~n~l~-~ip~~~~~l~~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~---~~~~L~~L~l~~N  668 (693)
                      ++|+++ .+|..++.+     ..++.|+|++|+++|.+|..++++++|+.|||++|+++ .||.   .+++|++||+++|
T Consensus       640 s~N~l~g~ip~~l~~l-----~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N  714 (768)
T 3rgz_A          640 SYNMLSGYIPKEIGSM-----PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN  714 (768)
T ss_dssp             CSSCCBSCCCGGGGGC-----TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred             cCCcccccCCHHHhcc-----ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence            999999 899988887     78899999999999999999999999999999999999 7887   6789999999999


Q ss_pred             ceeEecCCCcccccc
Q psy8029         669 EKIICHGSTKPLNGI  683 (693)
Q Consensus       669 ~l~~~~~~~~~~~~~  683 (693)
                      +++...+++..+...
T Consensus       715 ~l~g~iP~~~~~~~~  729 (768)
T 3rgz_A          715 NLSGPIPEMGQFETF  729 (768)
T ss_dssp             EEEEECCSSSSGGGS
T ss_pred             cccccCCCchhhccC
Confidence            999887777665543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.1e-55  Score=506.19  Aligned_cols=567  Identities=22%  Similarity=0.253  Sum_probs=473.4

Q ss_pred             EEEEecCCCCCCCccCCCCCCCCCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccE
Q psy8029          26 VGVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKH  105 (693)
Q Consensus        26 ~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~  105 (693)
                      ..++|....    +..+|..-.+++++|+++++.+.......   ..+++.|+.|+++++  .++.+.+.+|+++++|++
T Consensus         7 ~~~~cs~~~----L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~   77 (680)
T 1ziw_A            7 EVADCSHLK----LTQVPDDLPTNITVLNLTHNQLRRLPAAN---FTRYSQLTSLDVGFN--TISKLEPELCQKLPMLKV   77 (680)
T ss_dssp             SEEECCSSC----CSSCCSCSCTTCSEEECCSSCCCCCCGGG---GGGGTTCSEEECCSS--CCCCCCTTHHHHCTTCCE
T ss_pred             CeeECCCCC----ccccccccCCCCcEEECCCCCCCCcCHHH---HhCCCcCcEEECCCC--ccCccCHHHHhcccCcCE
Confidence            357786532    34566544478999999999987654322   235788999999999  999998899999999999


Q ss_pred             EEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCC
Q psy8029         106 ILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ  185 (693)
Q Consensus       106 L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  185 (693)
                      |++++| .++.+++.+|+++++|++|++++|.++++++..|+++++|++|++++|.++++.+..+.++++|++|++++|+
T Consensus        78 L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  156 (680)
T 1ziw_A           78 LNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK  156 (680)
T ss_dssp             EECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred             EECCCC-ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence            999999 9999999899999999999999999999998889999999999999999999988889999999999999999


Q ss_pred             CCCCChhhcC--CCCCCcEEECcCCCCCcCCCCcCCCC---------------------------CCCcEEEcCCCcccc
Q psy8029         186 LINLTRAIFN--NVPNLRSLDISGNNISILPSGVFSDL---------------------------RKLQTFYANSNRFQM  236 (693)
Q Consensus       186 l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l---------------------------~~L~~L~l~~n~l~~  236 (693)
                      ++++.+..+.  .+++|++|++++|.++++++..|..+                           ++|+.|++++|.+..
T Consensus       157 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~  236 (680)
T 1ziw_A          157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST  236 (680)
T ss_dssp             CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE
T ss_pred             ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc
Confidence            9998887654  56899999999999999888766554                           567778888888888


Q ss_pred             CChhhhhcccC--ceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCC----
Q psy8029         237 FPKDLFAEMKY--LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT----  310 (693)
Q Consensus       237 ~~~~~~~~~~~--L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~----  310 (693)
                      +.+..|..++.  |++|++++|.  +..+++..|..+++|++|++++|.+.++++..|.++++|+.|++++| ..+    
T Consensus       237 ~~~~~~~~l~~~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~-~~~~~~~  313 (680)
T 1ziw_A          237 TSNTTFLGLKWTNLTMLDLSYNN--LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS-FTKQSIS  313 (680)
T ss_dssp             ECTTTTGGGGGSCCCEEECTTSC--CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC-BCCC---
T ss_pred             cChhHhhccCcCCCCEEECCCCC--cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch-hhhcccc
Confidence            77777877765  9999999998  55677677899999999999999999988888999999999999876 322    


Q ss_pred             -----cCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCcc--ccCc----cCCCCCCeEeCCCCcc
Q psy8029         311 -----SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN--ITSL----VGLSGLNSLDLSWNQL  379 (693)
Q Consensus       311 -----~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~--l~~~----~~l~~L~~L~Ls~n~l  379 (693)
                           .++...|..+++|++|++++|.++.+++..|..+++|++|++++|.+..  ++..    ...++|+.|++++|.+
T Consensus       314 ~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l  393 (680)
T 1ziw_A          314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI  393 (680)
T ss_dssp             ---CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCC
T ss_pred             cccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCC
Confidence                 3334467889999999999999999988889999999999999997543  4332    2336899999999999


Q ss_pred             ccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCc--c
Q psy8029         380 EQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFS--F  457 (693)
Q Consensus       380 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~  457 (693)
                      +++.+.+|..+++|++|++++|.+++..   ....+.++++|++|++++|.++++.+..|..+++|+.|++++|.++  +
T Consensus       394 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  470 (680)
T 1ziw_A          394 SKIESDAFSWLGHLEVLDLGLNEIGQEL---TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD  470 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCEEEC---CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTT
T ss_pred             CeEChhhhhCCCCCCEEeCCCCcCcccc---CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccc
Confidence            9999999999999999999999997542   2357888999999999999999999999999999999999999987  4


Q ss_pred             CCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhcccccc
Q psy8029         458 IPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKT  537 (693)
Q Consensus       458 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~  537 (693)
                      ..+..+..+++|+.|++++|+++.+++..+..+              .+++.+++++|.+..-              .. 
T Consensus       471 ~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l--------------~~L~~L~Ls~N~l~~~--------------~~-  521 (680)
T 1ziw_A          471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGL--------------EKLEILDLQHNNLARL--------------WK-  521 (680)
T ss_dssp             CSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC--------------TTCCEEECCSSCCGGG--------------GS-
T ss_pred             cCCcccccCCCCCEEECCCCCCCcCChhhhccc--------------cccCEEeCCCCCcccc--------------ch-
Confidence            456668889999999999999999887777655              4588999999986410              00 


Q ss_pred             eeeeeeeccCceeecCCCCccccccCCCCCcccCCCCCCCcEeeecCCCceEEEEcCCCCcccCCCC-CCCCccccCceE
Q psy8029         538 VYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDY-LPVTYEDKKATS  616 (693)
Q Consensus       538 ~~~~~~~~~~~~~c~~~~~~~~~~l~~~~l~c~~~~cp~~~~~~~~~~~~l~~l~ls~n~l~~ip~~-~~~l~~~~~~~l  616 (693)
                                   +..|.+ ..                    ..+..+..++.+++++|+++.+|.. +..+     ..+
T Consensus       522 -------------~~~~~~-~~--------------------~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l-----~~L  562 (680)
T 1ziw_A          522 -------------HANPGG-PI--------------------YFLKGLSHLHILNLESNGFDEIPVEVFKDL-----FEL  562 (680)
T ss_dssp             -------------TTSTTS-CC--------------------CTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----TTC
T ss_pred             -------------hhccCC-cc--------------------hhhcCCCCCCEEECCCCCCCCCCHHHcccc-----cCc
Confidence                         000000 00                    0123355689999999999999874 5555     678


Q ss_pred             EEEEecCCccccCCCCCCcccccCcEEEccCCccccccC-----cCCCccEEEeeCCceeEecCCC
Q psy8029         617 IQLILHNNSINHFLESPPESYKLITDLDLSYNNISHVDT-----MYPYLNHLELIDSEKIICHGST  677 (693)
Q Consensus       617 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-----~~~~L~~L~l~~N~l~~~~~~~  677 (693)
                      +.|+|++|+++++++..|.++++|+.|+|++|+|+.++.     .+++|+.|++++|+ +.|++..
T Consensus       563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~-~~c~c~~  627 (680)
T 1ziw_A          563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP-FDCTCES  627 (680)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCC-CCBCCCC
T ss_pred             ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCC-cccCCcc
Confidence            999999999999999999999999999999999998877     25899999999999 6788774

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.8e-53  Score=479.63  Aligned_cols=504  Identities=21%  Similarity=0.305  Sum_probs=342.6

Q ss_pred             EEEEecCCCCCCCccCCCCCCCCCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccE
Q psy8029          26 VGVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKH  105 (693)
Q Consensus        26 ~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~  105 (693)
                      ..++|...    ++..+|..-.+.+++|+++++.+......   ...++++|++|++++|  .++.+.+.+|+++++|++
T Consensus        15 ~~~~c~~~----~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~   85 (606)
T 3t6q_A           15 KTYNCENL----GLNEIPGTLPNSTECLEFSFNVLPTIQNT---TFSRLINLTFLDLTRC--QIYWIHEDTFQSQHRLDT   85 (606)
T ss_dssp             TEEECTTS----CCSSCCTTSCTTCCEEECTTCCCSEECTT---TSTTCTTCSEEECTTC--CCCEECTTTTTTCTTCCE
T ss_pred             ceEECCCC----CcccCcCCCCCcCcEEEccCCccCcCChh---HhccCccceEEECCCC--ccceeChhhccCccccCe
Confidence            35778543    34566665556899999999998754322   2346888999999999  999988889999999999


Q ss_pred             EEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCC
Q psy8029         106 ILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ  185 (693)
Q Consensus       106 L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  185 (693)
                      |++++| .++.+++..|+++++|++|++++|.++++++..|+++++|++|++++|.+.++....+..+++|++|++++|+
T Consensus        86 L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  164 (606)
T 3t6q_A           86 LVLTAN-PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA  164 (606)
T ss_dssp             EECTTC-CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC
T ss_pred             eeCCCC-cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc
Confidence            999999 9999888889999999999999999998877778999999999999999988765556668999999999999


Q ss_pred             CCCCChhhcCCCCCCc--EEECcCCCCCcCCCCcCCCC------------------------------------------
Q psy8029         186 LINLTRAIFNNVPNLR--SLDISGNNISILPSGVFSDL------------------------------------------  221 (693)
Q Consensus       186 l~~~~~~~~~~l~~L~--~L~L~~n~i~~~~~~~~~~l------------------------------------------  221 (693)
                      ++++.+..|+.+++|+  +|++++|.++++++..|...                                          
T Consensus       165 l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~  244 (606)
T 3t6q_A          165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS  244 (606)
T ss_dssp             CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCC
T ss_pred             ccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccC
Confidence            9988888888888888  78888888777665544321                                          


Q ss_pred             ---------CCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccc
Q psy8029         222 ---------RKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLF  292 (693)
Q Consensus       222 ---------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  292 (693)
                               .+|+.|++++|.++.+++..|..+++|++|++++|.  +..+|.+ +..+++|++|++++|.+..+++..+
T Consensus       245 ~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~  321 (606)
T 3t6q_A          245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH--LSELPSG-LVGLSTLKKLVLSANKFENLCQISA  321 (606)
T ss_dssp             GGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC--CSCCCSS-CCSCTTCCEEECTTCCCSBGGGGCG
T ss_pred             hhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc--cCCCChh-hcccccCCEEECccCCcCcCchhhh
Confidence                     045666666666666666666677777777777776  4466654 5666677777777776666655555


Q ss_pred             cCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCC--hhhhccCccCceEeccCCcCccccC--------
Q psy8029         293 WNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLP--ENLFESLKELYTLNLKNNQLENITS--------  362 (693)
Q Consensus       293 ~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~Ls~n~l~~l~~--------  362 (693)
                      ..+++|+.|++++|...+.++...|..+++|++|++++|.++.++  ...+..+++|++|++++|++.+++.        
T Consensus       322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  401 (606)
T 3t6q_A          322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ  401 (606)
T ss_dssp             GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred             hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc
Confidence            666666666666662223455544555555555555555554432  2234444555555555554444321        


Q ss_pred             -------------------ccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcE
Q psy8029         363 -------------------LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLET  423 (693)
Q Consensus       363 -------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~  423 (693)
                                         ...+++|++|++++|.+.+..+..|..+++|++|++++|.+++.... ....+..+++|++
T Consensus       402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~~L~~  480 (606)
T 3t6q_A          402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ-KTNSLQTLGRLEI  480 (606)
T ss_dssp             CSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC-SSCGGGGCTTCCE
T ss_pred             CCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc-cchhhccCCCccE
Confidence                               13445555555555555555555555555555555555555432100 1233555566666


Q ss_pred             EECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccc
Q psy8029         424 INLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMV  503 (693)
Q Consensus       424 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~  503 (693)
                      |++++|.++++++..|..+++|+.|++++|++++.++..+..++.| .|++++|+++++++..+..+             
T Consensus       481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l-------------  546 (606)
T 3t6q_A          481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPIL-------------  546 (606)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHH-------------
T ss_pred             EECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccC-------------
Confidence            6666666666655556666666666666666666555555556666 66666666665555555444             


Q ss_pred             cccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCC---CCccccccCC
Q psy8029         504 ARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINSVRP  564 (693)
Q Consensus       504 ~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~~  564 (693)
                       ++++.+++++|||.|+|+..||.+|++.....      ......+.|..|   +|..+.+++.
T Consensus       547 -~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~------~~~~~~~~C~~p~~~~g~~l~~~~~  603 (606)
T 3t6q_A          547 -SQQRTINLRQNPLDCTCSNIYFLEWYKENMQK------LEDTEDTLCENPPLLRGVRLSDVTL  603 (606)
T ss_dssp             -HTSSEEECTTCCEECSGGGHHHHHHHHHCGGG------EECGGGCBEEESGGGTTCBGGGCCC
T ss_pred             -CCCCEEeCCCCCccccCCcHHHHHHHHhCccc------ccCCCCCeeCCchHhCCCeeeeeec
Confidence             45889999999999999999999999875221      124457899988   7888877753

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.5e-53  Score=492.84  Aligned_cols=590  Identities=20%  Similarity=0.215  Sum_probs=364.3

Q ss_pred             CCCCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCcc-CCCcccccEEEccCCcCcccccccc---
Q psy8029          46 NLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPY-FDGLHFVKHILLSHNKEITGLHKDI---  121 (693)
Q Consensus        46 ~~~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~-~~~l~~L~~L~Ls~n~~i~~~~~~~---  121 (693)
                      .++++++|++++|.+... ++.......+++|++|++++|  .++...+.. +.++++|++|++++| .+++..+..   
T Consensus        98 ~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~  173 (768)
T 3rgz_A           98 CSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSN--TLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVL  173 (768)
T ss_dssp             CCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSS--EEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHH
T ss_pred             cCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCC--ccCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhh
Confidence            346789999999987642 222112345788999999988  777443333 478888888888888 888766655   


Q ss_pred             cCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCc
Q psy8029         122 FKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLR  201 (693)
Q Consensus       122 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  201 (693)
                      +.++++|++|++++|.+++..+  +..+++|++|++++|.+.+..+. +.++++|++|++++|++++..+..|+.+++|+
T Consensus       174 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  250 (768)
T 3rgz_A          174 SDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELK  250 (768)
T ss_dssp             TTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCC
T ss_pred             hccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCC
Confidence            6777777777777777766443  36677777777777777765555 67777777777777777766666677777777


Q ss_pred             EEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccc-cCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcC
Q psy8029         202 SLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ-MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILG  280 (693)
Q Consensus       202 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~  280 (693)
                      +|++++|.+++..+..  .+++|++|++++|.++ .++...+..+++|++|++++|.  +....+..|..+++|++|+++
T Consensus       251 ~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~L~  326 (768)
T 3rgz_A          251 LLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH--FYGAVPPFFGSCSLLESLALS  326 (768)
T ss_dssp             EEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE--EEECCCGGGGGCTTCCEEECC
T ss_pred             EEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc--CCCccchHHhcCCCccEEECC
Confidence            7777777666443322  4555555555555555 3333322223555555555554  222222234455555555555


Q ss_pred             CCCCc-ccCcccccCCCCccEEEecCCCCCC-cCChhh------------------------hcC--CCCCcEEEccCCC
Q psy8029         281 ESSIA-ELPSDLFWNSTNITNIVLTGHKKLT-SLPSTL------------------------FRD--CKKLVKLELQRNK  332 (693)
Q Consensus       281 ~n~l~-~~~~~~~~~~~~L~~L~l~~n~~l~-~l~~~~------------------------~~~--~~~L~~L~l~~n~  332 (693)
                      +|.+. .++...+..+++|++|++++| .+. .+|..+                        +..  +++|++|++++|.
T Consensus       327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~  405 (768)
T 3rgz_A          327 SNNFSGELPMDTLLKMRGLKVLDLSFN-EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG  405 (768)
T ss_dssp             SSEEEEECCHHHHTTCTTCCEEECCSS-EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE
T ss_pred             CCcccCcCCHHHHhcCCCCCEEeCcCC-ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc
Confidence            55544 344444444555555555554 332 333221                        111  4566666666666


Q ss_pred             CCCCChhhhccCccCceEeccCCcCcc-ccCc-cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCccccccc
Q psy8029         333 LKYLPENLFESLKELYTLNLKNNQLEN-ITSL-VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQY  410 (693)
Q Consensus       333 l~~~~~~~~~~~~~L~~L~Ls~n~l~~-l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  410 (693)
                      ++...+..|..+++|+.|++++|++++ +|.. ..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.    
T Consensus       406 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~----  481 (768)
T 3rgz_A          406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE----  481 (768)
T ss_dssp             EEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC----
T ss_pred             cccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc----
Confidence            653333445677777777777777765 3333 6677777777777777777777777777777777777777754    


Q ss_pred             CCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhh
Q psy8029         411 GYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIK  490 (693)
Q Consensus       411 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  490 (693)
                      .+..+..+++|++|++++|++++..|.+++.+++|+.|++++|++++..+..+..+++|+.|++++|++++.-+..+...
T Consensus       482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~  561 (768)
T 3rgz_A          482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ  561 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred             CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence            35567777788888888888877777777778888888888888877666667777778888888887775444333222


Q ss_pred             cccCCCCCccccccccCcEEEcCCCcccccCCcHHH-HHHHhcccccce-----eeeeeeccCceeecCC------CCcc
Q psy8029         491 AAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDL-IRFVSKKMTKTV-----YQMLELVTDNLECFGN------AGVG  558 (693)
Q Consensus       491 ~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~c~~~------~~~~  558 (693)
                      ......     ......+..++.++.....|..... ..+ .+..+..+     ........+.+.+..|      ....
T Consensus       562 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~  635 (768)
T 3rgz_A          562 SGKIAA-----NFIAGKRYVYIKNDGMKKECHGAGNLLEF-QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM  635 (768)
T ss_dssp             TTCBCC-----STTCSCEEEEEECCSCCTTCCSSEEEEEC-TTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred             cchhhh-----hcccccccccccccccccccccccccccc-ccccchhhhccccccccccccceecccCchhhhcccccc
Confidence            111000     0001112233333332222211000 000 00000000     0011112223333333      1223


Q ss_pred             ccccCCCCCcccCCCCCCCcEeeecCCCceEEEEcCCCCcc-cCCCCCCCCccccCceEEEEEecCCccccCCCCCCccc
Q psy8029         559 INSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLT-HMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESY  637 (693)
Q Consensus       559 ~~~l~~~~l~c~~~~cp~~~~~~~~~~~~l~~l~ls~n~l~-~ip~~~~~l~~~~~~~l~~L~Ls~N~l~~~~~~~~~~l  637 (693)
                      ..++..+.+...++   .    .+..+..++.+++++|+++ .+|+.++.+     ..++.|||++|+++|.+|..++++
T Consensus       636 ~LdLs~N~l~g~ip---~----~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L-----~~L~~LdLs~N~l~g~ip~~l~~l  703 (768)
T 3rgz_A          636 FLDMSYNMLSGYIP---K----EIGSMPYLFILNLGHNDISGSIPDEVGDL-----RGLNILDLSSNKLDGRIPQAMSAL  703 (768)
T ss_dssp             EEECCSSCCBSCCC---G----GGGGCTTCCEEECCSSCCCSCCCGGGGGC-----TTCCEEECCSSCCEECCCGGGGGC
T ss_pred             EEECcCCcccccCC---H----HHhccccCCEEeCcCCccCCCCChHHhCC-----CCCCEEECCCCcccCcCChHHhCC
Confidence            34444455443332   1    1344667899999999999 999998887     789999999999999999999999


Q ss_pred             ccCcEEEccCCccc-cccC--cCCCccEEEeeCCc
Q psy8029         638 KLITDLDLSYNNIS-HVDT--MYPYLNHLELIDSE  669 (693)
Q Consensus       638 ~~L~~L~Ls~N~l~-~i~~--~~~~L~~L~l~~N~  669 (693)
                      ++|+.||+++|+++ .||.  .+..+....+.||+
T Consensus       704 ~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~  738 (768)
T 3rgz_A          704 TMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP  738 (768)
T ss_dssp             CCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCT
T ss_pred             CCCCEEECcCCcccccCCCchhhccCCHHHhcCCc
Confidence            99999999999999 7887  45566666777886

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.5e-52  Score=480.18  Aligned_cols=568  Identities=19%  Similarity=0.192  Sum_probs=449.2

Q ss_pred             cEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcE
Q psy8029          51 NAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLES  130 (693)
Q Consensus        51 ~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~  130 (693)
                      +.++.+++.+...     +... .+.++.|+++++  .++.+++..|+++++|++|++++| .++++++.+|+++++|++
T Consensus         7 ~~~~cs~~~L~~i-----p~~~-~~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~   77 (680)
T 1ziw_A            7 EVADCSHLKLTQV-----PDDL-PTNITVLNLTHN--QLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKV   77 (680)
T ss_dssp             SEEECCSSCCSSC-----CSCS-CTTCSEEECCSS--CCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCE
T ss_pred             CeeECCCCCcccc-----cccc-CCCCcEEECCCC--CCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCE
Confidence            4566666666432     2222 267999999999  999999889999999999999999 999999999999999999


Q ss_pred             EEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCC
Q psy8029         131 LNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI  210 (693)
Q Consensus       131 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i  210 (693)
                      |++++|.++.+++.+|+++++|++|++++|.+.++++..|+++++|++|++++|++++..+..++.+++|++|++++|.+
T Consensus        78 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  157 (680)
T 1ziw_A           78 LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI  157 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred             EECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence            99999999999998899999999999999999999988899999999999999999998888899999999999999999


Q ss_pred             CcCCCCcCC--CCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCcc-ccCCCCCccEEEcCCCCCccc
Q psy8029         211 SILPSGVFS--DLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSG-LFANLPLLNTVILGESSIAEL  287 (693)
Q Consensus       211 ~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~-~~~~l~~L~~L~l~~n~l~~~  287 (693)
                      +++++..+.  .+++|+.|++++|.++.+++..|..+++|+.+++.++.+........ .....++|+.|++++|.+.++
T Consensus       158 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~  237 (680)
T 1ziw_A          158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT  237 (680)
T ss_dssp             CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE
T ss_pred             cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc
Confidence            988876543  56899999999999999999889999999999998876431111000 001347899999999999988


Q ss_pred             CcccccCCCC--ccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCc------c
Q psy8029         288 PSDLFWNSTN--ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE------N  359 (693)
Q Consensus       288 ~~~~~~~~~~--L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~------~  359 (693)
                      ++..|.+++.  |+.|++++| .+..+++..|..+++|++|++++|.++.+++..|..+++|+.|++++|...      .
T Consensus       238 ~~~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~  316 (680)
T 1ziw_A          238 SNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS  316 (680)
T ss_dssp             CTTTTGGGGGSCCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------
T ss_pred             ChhHhhccCcCCCCEEECCCC-CcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccc
Confidence            8888877754  999999999 888888777899999999999999999888878899999999999987544      2


Q ss_pred             cc-----CccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccC--CCCCcEEECCCCCCC
Q psy8029         360 IT-----SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQ--CVNLETINLSYNRIS  432 (693)
Q Consensus       360 l~-----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~--l~~L~~L~Ls~n~l~  432 (693)
                      +|     .+..+++|++|++++|.+.++.+..|.++++|++|++++|.+.....  ....|..  .++|+.|++++|+++
T Consensus       317 lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l--~~~~f~~~~~~~L~~L~L~~n~l~  394 (680)
T 1ziw_A          317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL--TNETFVSLAHSPLHILNLTKNKIS  394 (680)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEE--CTTTTGGGTTSCCCEEECTTSCCC
T ss_pred             ccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhc--chhhhcccccCcCceEECCCCCCC
Confidence            33     22678999999999999999999999999999999999997653321  1233333  358999999999999


Q ss_pred             cCChhHHhcCCCCcEEECCCCCCcc-CCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEE
Q psy8029         433 SLFDDWISSMTSLKELDLRHNNFSF-IPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVI  511 (693)
Q Consensus       433 ~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~  511 (693)
                      ++.+..|..+++|+.|++++|++++ +++..+..+++|+.|++++|+++.+.+..+...              ++++.++
T Consensus       395 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~--------------~~L~~L~  460 (680)
T 1ziw_A          395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV--------------PSLQRLM  460 (680)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTC--------------TTCCEEE
T ss_pred             eEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcC--------------cccccch
Confidence            9988889999999999999999985 666778889999999999999998877776654              4578889


Q ss_pred             cCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCCCCccccccCCCCCcccCCCCCCCcEeeecCCCceEEE
Q psy8029         512 LNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSV  591 (693)
Q Consensus       512 l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~l~c~~~~cp~~~~~~~~~~~~l~~l  591 (693)
                      +++|.+.-.           +..+..+..          +   ......++..+.+..    .|..   .+..+..++.+
T Consensus       461 l~~n~l~~~-----------~~~p~~~~~----------l---~~L~~L~Ls~N~l~~----i~~~---~~~~l~~L~~L  509 (680)
T 1ziw_A          461 LRRVALKNV-----------DSSPSPFQP----------L---RNLTILDLSNNNIAN----INDD---MLEGLEKLEIL  509 (680)
T ss_dssp             CTTSCCBCT-----------TCSSCTTTT----------C---TTCCEEECCSSCCCC----CCTT---TTTTCTTCCEE
T ss_pred             hcccccccc-----------ccCCccccc----------C---CCCCEEECCCCCCCc----CChh---hhccccccCEE
Confidence            988875310           000000000          0   011111121111110    0110   12335568999


Q ss_pred             EcCCCCcccCCCC-----CCCCccccCceEEEEEecCCccccCCCCCCcccccCcEEEccCCccccccC----cCCCccE
Q psy8029         592 NCSSASLTHMPDY-----LPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNISHVDT----MYPYLNH  662 (693)
Q Consensus       592 ~ls~n~l~~ip~~-----~~~l~~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~~L~~  662 (693)
                      ++++|+++.++..     ....|. .-..++.|+|++|+++.+++..|.++++|+.|+|++|+++.+|.    .+++|+.
T Consensus       510 ~Ls~N~l~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  588 (680)
T 1ziw_A          510 DLQHNNLARLWKHANPGGPIYFLK-GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS  588 (680)
T ss_dssp             ECCSSCCGGGGSTTSTTSCCCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             eCCCCCccccchhhccCCcchhhc-CCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCE
Confidence            9999999866432     111111 12678999999999999998889999999999999999999987    4589999


Q ss_pred             EEeeCCceeEecCC
Q psy8029         663 LELIDSEKIICHGS  676 (693)
Q Consensus       663 L~l~~N~l~~~~~~  676 (693)
                      |++++|+++.+++.
T Consensus       589 L~L~~N~l~~~~~~  602 (680)
T 1ziw_A          589 LNLQKNLITSVEKK  602 (680)
T ss_dssp             EECTTSCCCBCCHH
T ss_pred             EECCCCcCCccChh
Confidence            99999999988765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.2e-52  Score=468.70  Aligned_cols=516  Identities=19%  Similarity=0.225  Sum_probs=380.1

Q ss_pred             cccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEE
Q psy8029          76 TINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVL  155 (693)
Q Consensus        76 ~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  155 (693)
                      .++.|+++++  .++.+.+.+|+++++|++|++++| .++.+.+.+|+++++|++|++++|+++.+++..|+++++|++|
T Consensus        34 ~l~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  110 (606)
T 3t6q_A           34 STECLEFSFN--VLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL  110 (606)
T ss_dssp             TCCEEECTTC--CCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred             cCcEEEccCC--ccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence            4677777777  777777677777777777777777 7777777777777777777777777777766667777777777


Q ss_pred             EcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCc--EEEcCCCc
Q psy8029         156 DLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQ--TFYANSNR  233 (693)
Q Consensus       156 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~--~L~l~~n~  233 (693)
                      ++++|.++++.+..|.++++|++|++++|+++++....+..+++|++|++++|.++.+++..|..+++|+  .|++++|.
T Consensus       111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~  190 (606)
T 3t6q_A          111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND  190 (606)
T ss_dssp             ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred             eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence            7777777777666677777777777777777776544455577777777777777777666677777777  77777777


Q ss_pred             cccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCcc--EEEcCC---CCCcccCcccccCCC--CccEEEecCC
Q psy8029         234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLN--TVILGE---SSIAELPSDLFWNST--NITNIVLTGH  306 (693)
Q Consensus       234 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~--~L~l~~---n~l~~~~~~~~~~~~--~L~~L~l~~n  306 (693)
                      ++.+++..|.. ..|+++++++|.    .++. .+..+..+.  .+.+..   .....++...|.++.  +++.+++++|
T Consensus       191 l~~~~~~~~~~-~~L~~L~l~~~~----~~~~-~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n  264 (606)
T 3t6q_A          191 IAGIEPGAFDS-AVFQSLNFGGTQ----NLLV-IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH  264 (606)
T ss_dssp             CCEECTTTTTT-CEEEEEECTTCS----CHHH-HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC
T ss_pred             cCccChhHhhh-ccccccccCCch----hHHH-HhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC
Confidence            77776665543 567777777665    1111 122233222  222221   112234455555544  7888999988


Q ss_pred             CCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc--cCCCCCCeEeCCCCccc-ccc
Q psy8029         307 KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL--VGLSGLNSLDLSWNQLE-QIN  383 (693)
Q Consensus       307 ~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~n~l~-~~~  383 (693)
                       .++.++...|..+++|++|++++|.++.+|.. +..+++|++|++++|+++.++..  ..+++|++|++++|.+. .+.
T Consensus       265 -~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  342 (606)
T 3t6q_A          265 -YFFNISSNTFHCFSGLQELDLTATHLSELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG  342 (606)
T ss_dssp             -CCSSCCTTTTTTCTTCSEEECTTSCCSCCCSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred             -ccCccCHHHhccccCCCEEeccCCccCCCChh-hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence             88888888888889999999999988888875 57888999999999998886443  77889999999999887 455


Q ss_pred             ccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCC-cc
Q psy8029         384 LIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPD-QL  462 (693)
Q Consensus       384 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~  462 (693)
                      +..+..+++|++|++++|.++....  .+..+..+++|++|++++|.++++.+..+..+++|+.|++++|++++..+ ..
T Consensus       343 ~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  420 (606)
T 3t6q_A          343 TGCLENLENLRELDLSHDDIETSDC--CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP  420 (606)
T ss_dssp             SSTTTTCTTCCEEECCSSCCCEEEE--STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT
T ss_pred             hhhhhccCcCCEEECCCCccccccC--cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh
Confidence            5568888999999999998886521  15567888899999999999988888888889999999999999887654 34


Q ss_pred             cccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeee
Q psy8029         463 DSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQML  542 (693)
Q Consensus       463 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~  542 (693)
                      +..+++|+.|++++|+++...+..+..+              ++++.+++++|++.-.            .    +.   
T Consensus       421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------~~L~~L~L~~n~l~~~------------~----~~---  467 (606)
T 3t6q_A          421 FQNLHLLKVLNLSHSLLDISSEQLFDGL--------------PALQHLNLQGNHFPKG------------N----IQ---  467 (606)
T ss_dssp             TTTCTTCCEEECTTCCCBTTCTTTTTTC--------------TTCCEEECTTCBCGGG------------E----EC---
T ss_pred             hhCcccCCEEECCCCccCCcCHHHHhCC--------------CCCCEEECCCCCCCcc------------c----cc---
Confidence            7788889999999999887766666544              4588899999886310            0    00   


Q ss_pred             eeccCceeecCCCCccccccCCCCCcccCCCCCCCcEeeecCCCceEEEEcCCCCcccC-CCCCCCCccccCceEEEEEe
Q psy8029         543 ELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHM-PDYLPVTYEDKKATSIQLIL  621 (693)
Q Consensus       543 ~~~~~~~~c~~~~~~~~~~l~~~~l~c~~~~cp~~~~~~~~~~~~l~~l~ls~n~l~~i-p~~~~~l~~~~~~~l~~L~L  621 (693)
                                  .        ..               .+..+..++.+++++|+++.+ |..+..+     ..++.|+|
T Consensus       468 ------------~--------~~---------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L  507 (606)
T 3t6q_A          468 ------------K--------TN---------------SLQTLGRLEILVLSFCDLSSIDQHAFTSL-----KMMNHVDL  507 (606)
T ss_dssp             ------------S--------SC---------------GGGGCTTCCEEECTTSCCCEECTTTTTTC-----TTCCEEEC
T ss_pred             ------------c--------ch---------------hhccCCCccEEECCCCccCccChhhhccc-----cCCCEEEC
Confidence                        0        00               012244588899999999955 5666665     77889999


Q ss_pred             cCCccccCCCCCCcccccCcEEEccCCccccccC----cCCCccEEEeeCCceeEecCCCcc
Q psy8029         622 HNNSINHFLESPPESYKLITDLDLSYNNISHVDT----MYPYLNHLELIDSEKIICHGSTKP  679 (693)
Q Consensus       622 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~~L~~L~l~~N~l~~~~~~~~~  679 (693)
                      ++|++++.+|..+.+++.| .|++++|+++.+++    .+++|+.|++++|++ .|++....
T Consensus       508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-~c~c~~~~  567 (606)
T 3t6q_A          508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL-DCTCSNIY  567 (606)
T ss_dssp             CSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE-ECSGGGHH
T ss_pred             CCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc-cccCCcHH
Confidence            9999999988889999999 99999999997765    457899999999995 56665433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.3e-51  Score=466.08  Aligned_cols=497  Identities=20%  Similarity=0.246  Sum_probs=359.7

Q ss_pred             EEEecCCCCCCCccCCCCCCCCCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEE
Q psy8029          27 GVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHI  106 (693)
Q Consensus        27 ~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L  106 (693)
                      .++|...    .+..+|....+++++|+++++.+.......   ..+++.|+.|++++|  .++.+++.+|+++++|++|
T Consensus        15 ~~~c~~~----~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~n--~l~~i~~~~~~~l~~L~~L   85 (606)
T 3vq2_A           15 TYQCMDQ----KLSKVPDDIPSSTKNIDLSFNPLKILKSYS---FSNFSELQWLDLSRC--EIETIEDKAWHGLHHLSNL   85 (606)
T ss_dssp             EEECTTS----CCSSCCTTSCTTCCEEECTTSCCCEECTTT---TTTCTTCCEEECTTC--CCCEECTTTTTTCTTCCEE
T ss_pred             ceEccCC----CcccCCCCCCCCcCEEECCCCCcCEeChhh---ccCCccCcEEeCCCC--cccccCHHHhhchhhcCEe
Confidence            6778542    355677765679999999999987543222   346889999999999  9999988999999999999


Q ss_pred             EccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccC-hhhhCCCCCCCEEEccCCC
Q psy8029         107 LLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD-PEIFKNLTSLRILNLDHNQ  185 (693)
Q Consensus       107 ~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~  185 (693)
                      ++++| .++.+++..|+++++|++|++++|.++++++..|+++++|++|++++|.+.++. |..|+++++|++|++++|+
T Consensus        86 ~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~  164 (606)
T 3vq2_A           86 ILTGN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY  164 (606)
T ss_dssp             ECTTC-CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred             ECCCC-cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence            99999 999998888999999999999999999998778999999999999999998743 6779999999999999999


Q ss_pred             CCCCChhhcCCCCCCc----EEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcccc-------------------------
Q psy8029         186 LINLTRAIFNNVPNLR----SLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM-------------------------  236 (693)
Q Consensus       186 l~~~~~~~~~~l~~L~----~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------  236 (693)
                      ++++.+..|+.+++|+    +|++++|.++.+++..+... +|+.|++++|.+..                         
T Consensus       165 l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  243 (606)
T 3vq2_A          165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD  243 (606)
T ss_dssp             CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred             ceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccccccccc
Confidence            9998877666665554    89999999988888776655 77888877775430                         


Q ss_pred             ---------------------------------CChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCC
Q psy8029         237 ---------------------------------FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS  283 (693)
Q Consensus       237 ---------------------------------~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~  283 (693)
                                                       ..+. +..+++|+.++++++.  +..++  .+..+++|++|++++|.
T Consensus       244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~--~~~l~--~l~~~~~L~~L~l~~n~  318 (606)
T 3vq2_A          244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVS--IKYLE--DVPKHFKWQSLSIIRCQ  318 (606)
T ss_dssp             SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCC--CCCCC--CCCTTCCCSEEEEESCC
T ss_pred             CCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCcc--chhhh--hccccccCCEEEccccc
Confidence                                             0011 3344555666666655  33444  25555666666666666


Q ss_pred             CcccCcc-------------------cccCCCCccEEEecCCCCCCcCC--hhhhcCCCCCcEEEccCCCCCCCChhhhc
Q psy8029         284 IAELPSD-------------------LFWNSTNITNIVLTGHKKLTSLP--STLFRDCKKLVKLELQRNKLKYLPENLFE  342 (693)
Q Consensus       284 l~~~~~~-------------------~~~~~~~L~~L~l~~n~~l~~l~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  342 (693)
                      +..+|.-                   .+..+++|+.|++++| .+..++  +..+..+++|++|++++|.++.++ ..|.
T Consensus       319 l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~  396 (606)
T 3vq2_A          319 LKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFM  396 (606)
T ss_dssp             CSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCT
T ss_pred             CcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCccccch-hhcc
Confidence            5545411                   2334455555555555 444432  233456666666666666666655 3456


Q ss_pred             cCccCceEeccCCcCccccC---ccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCC
Q psy8029         343 SLKELYTLNLKNNQLENITS---LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCV  419 (693)
Q Consensus       343 ~~~~L~~L~Ls~n~l~~l~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~  419 (693)
                      .+++|+.|++++|++.+++.   ...+++|++|++++|.+.+..+..|.++++|++|++++|.+++..   .+..+..++
T Consensus       397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~  473 (606)
T 3vq2_A          397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT---LSNVFANTT  473 (606)
T ss_dssp             TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCT
T ss_pred             CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc---hHHhhccCC
Confidence            67777777777777766543   266777777777777777777777777788888888888777521   256677888


Q ss_pred             CCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCc
Q psy8029         420 NLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNED  499 (693)
Q Consensus       420 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~  499 (693)
                      +|++|++++|.++++++.++..+++|+.|++++|+++++++..+..+++|+.|++++|+++.++.. +..++        
T Consensus       474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~--------  544 (606)
T 3vq2_A          474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFP--------  544 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSC--------
T ss_pred             CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-Hhhhc--------
Confidence            888888888888888888788888888888888888888777778888888888888888877655 44332        


Q ss_pred             cccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCC---CCccccccCC
Q psy8029         500 STMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINSVRP  564 (693)
Q Consensus       500 ~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~~  564 (693)
                           ++++.+++++|||.|+|+..||.+|++.....      ......+.|..|   +|..+.+++.
T Consensus       545 -----~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~------~~~~~~~~C~~p~~~~~~~l~~~~~  601 (606)
T 3vq2_A          545 -----KSLAFFNLTNNSVACICEHQKFLQWVKEQKQF------LVNVEQMTCATPVEMNTSLVLDFNN  601 (606)
T ss_dssp             -----TTCCEEECCSCCCCCSSTTHHHHTTTTTSSSS------BSSGGGCCCC---------------
T ss_pred             -----ccCcEEEccCCCcccCCccHHHHHHHHcCccc------ccCCccceeCCChHhCCCEeeeccc
Confidence                 34889999999999999999999998764211      123567888877   6666666654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.9e-51  Score=462.14  Aligned_cols=534  Identities=19%  Similarity=0.209  Sum_probs=431.9

Q ss_pred             cEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcE
Q psy8029          51 NAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLES  130 (693)
Q Consensus        51 ~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~  130 (693)
                      +.++.++..+....     ... .+.+++|+++++  .++.+++..|+++++|++|++++| .++++++.+|.++++|++
T Consensus        14 ~~~~c~~~~l~~ip-----~~~-~~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~   84 (606)
T 3vq2_A           14 ITYQCMDQKLSKVP-----DDI-PSSTKNIDLSFN--PLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSN   84 (606)
T ss_dssp             TEEECTTSCCSSCC-----TTS-CTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCE
T ss_pred             CceEccCCCcccCC-----CCC-CCCcCEEECCCC--CcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCE
Confidence            35566665554432     211 267999999999  999999889999999999999999 999999989999999999


Q ss_pred             EEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCC-hhhcCCCCCCcEEECcCCC
Q psy8029         131 LNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLT-RAIFNNVPNLRSLDISGNN  209 (693)
Q Consensus       131 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~  209 (693)
                      |++++|.++++++..|+++++|++|++++|.+.++++..|+++++|++|++++|+++++. +..|+++++|++|++++|.
T Consensus        85 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~  164 (606)
T 3vq2_A           85 LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY  164 (606)
T ss_dssp             EECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred             eECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence            999999999987788999999999999999999998888999999999999999998643 6678999999999999999


Q ss_pred             CCcCCCCcCCCCCCCc----EEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCC-
Q psy8029         210 ISILPSGVFSDLRKLQ----TFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI-  284 (693)
Q Consensus       210 i~~~~~~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l-  284 (693)
                      ++.+++..|+.+++|+    +|++++|.++.+++..|... +|++|++++|......++. .+..++.++.+.+..+.+ 
T Consensus       165 l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~-~~~~l~~L~~l~l~~~~~~  242 (606)
T 3vq2_A          165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKT-CLQNLAGLHVHRLILGEFK  242 (606)
T ss_dssp             CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHH-HHHTTTTCEEEEEEEECCT
T ss_pred             ceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHH-Hhccccccccccccccccc
Confidence            9999888787777665    89999999999998887665 8999999999854433443 478888888887754333 


Q ss_pred             -----cccCcccccCCC--CccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcC
Q psy8029         285 -----AELPSDLFWNST--NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL  357 (693)
Q Consensus       285 -----~~~~~~~~~~~~--~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l  357 (693)
                           ..+....+.++.  .++.+++..+..+....+. |..+++|++|++++|.+..++  .+..+++|+.|++++|++
T Consensus       243 ~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l  319 (606)
T 3vq2_A          243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQL  319 (606)
T ss_dssp             TSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCC
T ss_pred             cCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh--hccccccCCEEEcccccC
Confidence                 223444444433  4666777443355544444 788999999999999999888  478899999999999999


Q ss_pred             ccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChh
Q psy8029         358 ENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDD  437 (693)
Q Consensus       358 ~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  437 (693)
                      ..+|.. .+++|++|++++|...+..  .+..+++|++|++++|.+++...  .+..+..+++|++|++++|.+++++ .
T Consensus       320 ~~lp~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~-~  393 (606)
T 3vq2_A          320 KQFPTL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGC--CSYSDLGTNSLRHLDLSFNGAIIMS-A  393 (606)
T ss_dssp             SSCCCC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEE--CCHHHHCCSCCCEEECCSCSEEEEC-C
T ss_pred             cccccC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcc--hhhhhccCCcccEeECCCCccccch-h
Confidence            889977 8999999999999654433  67789999999999999886521  2456788999999999999999876 5


Q ss_pred             HHhcCCCCcEEECCCCCCccCCC-cccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCc
Q psy8029         438 WISSMTSLKELDLRHNNFSFIPD-QLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNP  516 (693)
Q Consensus       438 ~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np  516 (693)
                      .+..+++|+.|++++|++++.++ ..+..+++|+.|++++|+++...+..+..+              ++++.+++++|.
T Consensus       394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------~~L~~L~l~~n~  459 (606)
T 3vq2_A          394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL--------------TSLNTLKMAGNS  459 (606)
T ss_dssp             CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC--------------TTCCEEECTTCE
T ss_pred             hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC--------------CCCCEEECCCCc
Confidence            68899999999999999998877 678889999999999999998877766554              458899999998


Q ss_pred             ccccCCcHHHHHHHhcccccceeeeeeeccCceeecCCCCccccccCCCCCcccCCCCCCCcEeeecCCCceEEEEcCCC
Q psy8029         517 IACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSA  596 (693)
Q Consensus       517 ~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~l~c~~~~cp~~~~~~~~~~~~l~~l~ls~n  596 (693)
                      +...             .                           + +.               .+..+.+++.+++++|
T Consensus       460 l~~~-------------~---------------------------~-~~---------------~~~~l~~L~~L~Ls~n  483 (606)
T 3vq2_A          460 FKDN-------------T---------------------------L-SN---------------VFANTTNLTFLDLSKC  483 (606)
T ss_dssp             EGGG-------------E---------------------------E-CS---------------CCTTCTTCCEEECTTS
T ss_pred             CCCc-------------c---------------------------h-HH---------------hhccCCCCCEEECCCC
Confidence            5310             0                           0 00               0122445899999999


Q ss_pred             CcccC-CCCCCCCccccCceEEEEEecCCccccCCCCCCcccccCcEEEccCCccccccC---cC-CCccEEEeeCCcee
Q psy8029         597 SLTHM-PDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNISHVDT---MY-PYLNHLELIDSEKI  671 (693)
Q Consensus       597 ~l~~i-p~~~~~l~~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~---~~-~~L~~L~l~~N~l~  671 (693)
                      +++.+ |..+..+     ..+++|+|++|++++.+|..++++++|+.|+|++|+++.+|.   .+ ++|++|++++|++ 
T Consensus       484 ~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~-  557 (606)
T 3vq2_A          484 QLEQISWGVFDTL-----HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV-  557 (606)
T ss_dssp             CCCEECTTTTTTC-----TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCC-
T ss_pred             cCCccChhhhccc-----ccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCc-
Confidence            99955 5566666     778999999999999988889999999999999999999998   33 4799999999995 


Q ss_pred             EecCCCccc
Q psy8029         672 ICHGSTKPL  680 (693)
Q Consensus       672 ~~~~~~~~~  680 (693)
                      .|++..+.+
T Consensus       558 ~c~c~~~~~  566 (606)
T 3vq2_A          558 ACICEHQKF  566 (606)
T ss_dssp             CCSSTTHHH
T ss_pred             ccCCccHHH
Confidence            466665443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-49  Score=463.24  Aligned_cols=497  Identities=19%  Similarity=0.255  Sum_probs=322.6

Q ss_pred             EEEEecCCCCCCCccCCCCCCCCCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccE
Q psy8029          26 VGVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKH  105 (693)
Q Consensus        26 ~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~  105 (693)
                      ..++|...    .+..+|. ..+++++|++++|.+.......   ..++++|+.|++++| ..+..+++.+|+++++|++
T Consensus         7 ~~~dcs~~----~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~---~~~l~~L~~LdLs~n-~~~~~i~~~~f~~L~~L~~   77 (844)
T 3j0a_A            7 RIAFYRFC----NLTQVPQ-VLNTTERLLLSFNYIRTVTASS---FPFLEQLQLLELGSQ-YTPLTIDKEAFRNLPNLRI   77 (844)
T ss_dssp             EEEEESCC----CSSCCCS-SCTTCCEEEEESCCCCEECSSS---CSSCCSCSEEEECTT-CCCCEECTTTTSSCTTCCE
T ss_pred             eEEEccCC----CCCCCCC-CCCCcCEEECCCCcCCccChhH---CcccccCeEEeCCCC-CCccccCHHHhcCCCCCCE
Confidence            45677543    3566777 5679999999999987543222   346889999999998 3455787889999999999


Q ss_pred             EEccCCcCcccccccccCCCCCCcEEEeeCCcccc--cCcccCCCCCCCcEEEcCCCCCCccCh-hhhCCCCCCCEEEcc
Q psy8029         106 ILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITE--LYSGVFQYVPKLQVLDLGSNDVAYMDP-EIFKNLTSLRILNLD  182 (693)
Q Consensus       106 L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~  182 (693)
                      |+|++| .++.+.+..|.++++|++|+|++|.+++  .....|.++++|++|++++|.+.++.+ ..|+++++|++|+++
T Consensus        78 L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls  156 (844)
T 3j0a_A           78 LDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS  156 (844)
T ss_dssp             EECTTC-CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred             EECCCC-cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence            999999 9999988899999999999999999987  333458999999999999999988754 578999999999999


Q ss_pred             CCCCCCCChhhcCCC--CCCcEEECcCCCCCcCCCCcCCCC---------------------------------------
Q psy8029         183 HNQLINLTRAIFNNV--PNLRSLDISGNNISILPSGVFSDL---------------------------------------  221 (693)
Q Consensus       183 ~n~l~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l---------------------------------------  221 (693)
                      +|.++++.+..+..+  ++|+.|++++|.+....+..+..+                                       
T Consensus       157 ~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L  236 (844)
T 3j0a_A          157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL  236 (844)
T ss_dssp             SSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEE
T ss_pred             CCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccce
Confidence            999988766655544  555555555555544333223322                                       


Q ss_pred             -----------------------------CCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCC
Q psy8029         222 -----------------------------RKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP  272 (693)
Q Consensus       222 -----------------------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~  272 (693)
                                                   ++|+.|++++|.+..+++..|..+++|+.|++++|.  +..+++..|..++
T Consensus       237 ~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~  314 (844)
T 3j0a_A          237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK--INKIADEAFYGLD  314 (844)
T ss_dssp             ECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC--CCEECTTTTTTCS
T ss_pred             ecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc--CCCCChHHhcCCC
Confidence                                         344555555555444444444555555555555554  3344444455555


Q ss_pred             CccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEec
Q psy8029         273 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNL  352 (693)
Q Consensus       273 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  352 (693)
                      +|++|++++|.+..+.+..|.++++|+.|++++| .++.++...|..+++|++|++++|.++.++.     +++|+.|++
T Consensus       315 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-----~~~L~~L~l  388 (844)
T 3j0a_A          315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----IPSIPDIFL  388 (844)
T ss_dssp             SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCCSCCCSS-----CCSCSEEEE
T ss_pred             CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCCCCcccC-----CCCcchhcc
Confidence            5555555555555554444555555555555555 4555554445555555555555555444332     333333333


Q ss_pred             cCCcCccccCc-----------------------cCCCCCCeEeCCCCcccccccc-ccCCCCCCcEEECCCCcCccccc
Q psy8029         353 KNNQLENITSL-----------------------VGLSGLNSLDLSWNQLEQINLI-AFDGLSSLNTVDLSHNLLTFDEY  408 (693)
Q Consensus       353 s~n~l~~l~~~-----------------------~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~  408 (693)
                      ++|+++.++..                       ..+++|++|++++|.+++..+. .+..+++|+.|++++|.++....
T Consensus       389 ~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~  468 (844)
T 3j0a_A          389 SGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE  468 (844)
T ss_dssp             ESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCC
T ss_pred             CCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccc
Confidence            33333333221                       2445555555555555544322 23345555555555555543211


Q ss_pred             -ccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccch
Q psy8029         409 -QYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTL  487 (693)
Q Consensus       409 -~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  487 (693)
                       ...+..|.++++|++|+|++|.++++++..|.++++|+.|+|++|+|+++++..+.  ++|+.|++++|+++++.+..+
T Consensus       469 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~  546 (844)
T 3j0a_A          469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF  546 (844)
T ss_dssp             SCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC
T ss_pred             cccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh
Confidence             01124466777777777777777777777777777888888888887777776544  677778888887777666544


Q ss_pred             hhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCC---CCccccccCC
Q psy8029         488 EIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINSVRP  564 (693)
Q Consensus       488 ~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~~  564 (693)
                                       .+++.+++++|||.|+|++.||.+|+...... +    ......+.|..|   +|..+.+++.
T Consensus       547 -----------------~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~-~----~~~~~~~~C~~p~~~~g~~l~~~~~  604 (844)
T 3j0a_A          547 -----------------VSLSVLDITHNKFICECELSTFINWLNHTNVT-I----AGPPADIYCVYPDSFSGVSLFSLST  604 (844)
T ss_dssp             -----------------SSCCEEEEEEECCCCSSSCCSHHHHHHHTTTT-T----CCCGGGCCCSSCSSSCSCCTTTCCC
T ss_pred             -----------------CCcCEEEecCCCcccccccHHHHHHHHhcCcc-c----ccccccCccCCchhhCCCccccCcc
Confidence                             24779999999999999999999998753211 1    123456789887   5666666554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2e-48  Score=436.88  Aligned_cols=468  Identities=20%  Similarity=0.284  Sum_probs=392.5

Q ss_pred             EEEecCCCCCCCccCCCCCCCCCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEE
Q psy8029          27 GVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHI  106 (693)
Q Consensus        27 ~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L  106 (693)
                      .++|.+.    .+..+|..-.++++.|+++++.+......   ...+++.|+.|++++|  .++.+++.+|+++++|++|
T Consensus        11 ~~~c~~~----~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n--~i~~i~~~~~~~l~~L~~L   81 (570)
T 2z63_A           11 TYQCMEL----NFYKIPDNLPFSTKNLDLSFNPLRHLGSY---SFFSFPELQVLDLSRC--EIQTIEDGAYQSLSHLSTL   81 (570)
T ss_dssp             EEECCSS----CCSSCCSSSCSSCCEEECCSCCCCEECTT---TTTTCSSCCEEECTTC--CCCEECTTTTTTCTTCCEE
T ss_pred             EEEeCCC----CccccCCCccccccEEEccCCccCccChh---HhhCCCCceEEECCCC--cCCccCcccccCchhCCEE
Confidence            5778652    34556664446899999999998754322   2346889999999999  9999998999999999999


Q ss_pred             EccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccC-hhhhCCCCCCCEEEccCCC
Q psy8029         107 LLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD-PEIFKNLTSLRILNLDHNQ  185 (693)
Q Consensus       107 ~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~  185 (693)
                      ++++| .++.+++.+|.++++|++|++++|.++.++...|+++++|++|++++|.+..+. |..|+++++|++|++++|+
T Consensus        82 ~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~  160 (570)
T 2z63_A           82 ILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (570)
T ss_dssp             ECTTC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred             eCcCC-cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence            99999 999999999999999999999999999998877999999999999999998753 6779999999999999999


Q ss_pred             CCCCChhhcCCCCCC----cEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCc----------------------------
Q psy8029         186 LINLTRAIFNNVPNL----RSLDISGNNISILPSGVFSDLRKLQTFYANSNR----------------------------  233 (693)
Q Consensus       186 l~~~~~~~~~~l~~L----~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~----------------------------  233 (693)
                      ++++.+..++.+++|    ++|++++|.++.+++..|..+ +|+.|++++|.                            
T Consensus       161 l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~  239 (570)
T 2z63_A          161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN  239 (570)
T ss_dssp             CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred             cceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence            999988888888888    899999999999998888765 78888888762                            


Q ss_pred             ------------------------------cccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCC
Q psy8029         234 ------------------------------FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS  283 (693)
Q Consensus       234 ------------------------------l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~  283 (693)
                                                    +....+..|..+++|++|++++|.  +..+|.. +..+ +|++|++++|.
T Consensus       240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--l~~l~~~-~~~~-~L~~L~l~~n~  315 (570)
T 2z63_A          240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT--IERVKDF-SYNF-GWQHLELVNCK  315 (570)
T ss_dssp             CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE--ECSCCBC-CSCC-CCSEEEEESCB
T ss_pred             chhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc--chhhhhh-hccC-CccEEeeccCc
Confidence                                          122233446667888888888887  5567765 4556 88888888888


Q ss_pred             CcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCC--hhhhccCccCceEeccCCcCcccc
Q psy8029         284 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLP--ENLFESLKELYTLNLKNNQLENIT  361 (693)
Q Consensus       284 l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~Ls~n~l~~l~  361 (693)
                      +..++.   ..+++|+.|++++| .+......  ..+++|++|++++|.++.+.  +..+..+++|++|++++|.++.++
T Consensus       316 ~~~l~~---~~l~~L~~L~l~~n-~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  389 (570)
T 2z63_A          316 FGQFPT---LKLKSLKRLTFTSN-KGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS  389 (570)
T ss_dssp             CSSCCB---CBCSSCCEEEEESC-BSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE
T ss_pred             ccccCc---ccccccCEEeCcCC-cccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc
Confidence            887775   45678889999888 44333222  57889999999999988664  445788999999999999998876


Q ss_pred             Cc-cCCCCCCeEeCCCCccccccc-cccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCC-cCChhH
Q psy8029         362 SL-VGLSGLNSLDLSWNQLEQINL-IAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS-SLFDDW  438 (693)
Q Consensus       362 ~~-~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~  438 (693)
                      .. ..+++|++|++++|.+.+..+ ..|..+++|++|++++|.++..    .+..+..+++|++|++++|.++ +..|..
T Consensus       390 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~p~~  465 (570)
T 2z63_A          390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQENFLPDI  465 (570)
T ss_dssp             EEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC----CTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred             ccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc----chhhhhcCCcCcEEECcCCcCccccchhh
Confidence            64 788999999999999988765 5788899999999999998866    4677889999999999999997 456677


Q ss_pred             HhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCccc
Q psy8029         439 ISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIA  518 (693)
Q Consensus       439 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~  518 (693)
                      +..+++|+.|++++|+++++++..+..+++|+.|++++|+++++++..+..+              ++++.+++++|||.
T Consensus       466 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------~~L~~L~l~~N~~~  531 (570)
T 2z63_A          466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL--------------TSLQKIWLHTNPWD  531 (570)
T ss_dssp             CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC--------------TTCCEEECCSSCBC
T ss_pred             hhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcc--------------cCCcEEEecCCccc
Confidence            8899999999999999999988888899999999999999999877766554              45889999999999


Q ss_pred             ccCCcHHHH-HHHhcc
Q psy8029         519 CNCSNYDLI-RFVSKK  533 (693)
Q Consensus       519 c~C~~~~~~-~~~~~~  533 (693)
                      |+|+..|+. .|+...
T Consensus       532 ~~~~~~~~~~~wl~~~  547 (570)
T 2z63_A          532 CSCPRIDYLSRWLNKN  547 (570)
T ss_dssp             CCTTTTHHHHHHHHHT
T ss_pred             CCCcchHHHHHHHHhc
Confidence            999999988 998774

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-47  Score=446.47  Aligned_cols=530  Identities=21%  Similarity=0.241  Sum_probs=383.8

Q ss_pred             cEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcE
Q psy8029          51 NAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLES  130 (693)
Q Consensus        51 ~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~  130 (693)
                      ...+.++|.+....     .  -.+.++.|++++|  .++.+.+..|+++++|++|+|++|..+..+++.+|.++++|++
T Consensus         7 ~~~dcs~~~L~~vP-----~--lp~~l~~LdLs~N--~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~   77 (844)
T 3j0a_A            7 RIAFYRFCNLTQVP-----Q--VLNTTERLLLSFN--YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRI   77 (844)
T ss_dssp             EEEEESCCCSSCCC-----S--SCTTCCEEEEESC--CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCE
T ss_pred             eEEEccCCCCCCCC-----C--CCCCcCEEECCCC--cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCE
Confidence            34555556554432     2  2356888888888  8888877888888888888888884455677777888888888


Q ss_pred             EEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccCh--hhhCCCCCCCEEEccCCCCCCCCh-hhcCCCCCCcEEECcC
Q psy8029         131 LNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP--EIFKNLTSLRILNLDHNQLINLTR-AIFNNVPNLRSLDISG  207 (693)
Q Consensus       131 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~  207 (693)
                      |+|++|.++.+.+..|.++++|++|+|++|.+.+..+  ..|.++++|++|++++|.++++.+ ..|+++++|++|++++
T Consensus        78 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~  157 (844)
T 3j0a_A           78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS  157 (844)
T ss_dssp             EECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred             EECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence            8888888888777778888888888888888876333  347788888888888888877654 4678888888888888


Q ss_pred             CCCCcCCCCcCCCC--CCCcEEEcCCCccccCChhhhhcccC------ceEEEEecCCCcccccCccccC--CCCCccEE
Q psy8029         208 NNISILPSGVFSDL--RKLQTFYANSNRFQMFPKDLFAEMKY------LQVIKISYHKDSLKELPSGLFA--NLPLLNTV  277 (693)
Q Consensus       208 n~i~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~------L~~L~l~~n~~~~~~i~~~~~~--~l~~L~~L  277 (693)
                      |.++.+.+..+..+  ++|+.|++++|.+....+..+..+.+      |++|++++|.+.. .++.....  ....++.+
T Consensus       158 N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~~l~~~~l~~L  236 (844)
T 3j0a_A          158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV-DITGNFSNAISKSQAFSL  236 (844)
T ss_dssp             SCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST-TTTSGGGGTSCSCCBSEE
T ss_pred             CcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCch-hHHHHHHhhcCcccccce
Confidence            88887777777666  78888888888877544433444443      8888888886433 33332222  22466777


Q ss_pred             EcCC---------CCCcccCcccccCC--CCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCcc
Q psy8029         278 ILGE---------SSIAELPSDLFWNS--TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKE  346 (693)
Q Consensus       278 ~l~~---------n~l~~~~~~~~~~~--~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  346 (693)
                      .++.         +.+.......|.++  ++|+.|++++| .+..+++..|..+++|++|++++|.++.+++..|..+++
T Consensus       237 ~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~  315 (844)
T 3j0a_A          237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN  315 (844)
T ss_dssp             ECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSS
T ss_pred             ecccccccccccccccCCCChhhhhccccCCccEEECCCC-cccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCC
Confidence            7653         23333444445543  67888888888 777777777788888888888888888777777888888


Q ss_pred             CceEeccCCcCccccCc--cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEE
Q psy8029         347 LYTLNLKNNQLENITSL--VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETI  424 (693)
Q Consensus       347 L~~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L  424 (693)
                      |++|++++|+++.+...  ..+++|++|++++|.+.++.+..|..+++|++|++++|.++..         ..+++|+.|
T Consensus       316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i---------~~~~~L~~L  386 (844)
T 3j0a_A          316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI---------HFIPSIPDI  386 (844)
T ss_dssp             CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC---------SSCCSCSEE
T ss_pred             CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc---------cCCCCcchh
Confidence            88888888888776433  7788888888888888888888888888888888888888743         126788888


Q ss_pred             ECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcc-cccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccc
Q psy8029         425 NLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQL-DSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMV  503 (693)
Q Consensus       425 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~  503 (693)
                      ++++|+++.++..    ..+++.|++++|++++++... +..+++|+.|++++|+++.+........             
T Consensus       387 ~l~~N~l~~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-------------  449 (844)
T 3j0a_A          387 FLSGNKLVTLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE-------------  449 (844)
T ss_dssp             EEESCCCCCCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS-------------
T ss_pred             ccCCCCccccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc-------------
Confidence            8888888866432    467888888888888765432 3467788888888888886543321100             


Q ss_pred             cccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCCCCccccccCCCCCcccCCCCCCCcEeeec
Q psy8029         504 ARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFS  583 (693)
Q Consensus       504 ~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~l~c~~~~cp~~~~~~~~  583 (693)
                      ..+++.+++++|.+.-..              .                  .+     .           |+.    .+.
T Consensus       450 ~~~L~~L~Ls~N~l~~~~--------------~------------------~~-----~-----------~~~----~~~  477 (844)
T 3j0a_A          450 NPSLEQLFLGENMLQLAW--------------E------------------TE-----L-----------CWD----VFE  477 (844)
T ss_dssp             CTTCCBCEEESCCCSSSC--------------C------------------SC-----C-----------CSS----CSS
T ss_pred             CCccccccCCCCcccccc--------------c------------------cc-----c-----------chh----hhc
Confidence            145778888888753100              0                  00     0           111    123


Q ss_pred             CCCceEEEEcCCCCcccCCCC-CCCCccccCceEEEEEecCCccccCCCCCCcccccCcEEEccCCccccccC-cCCCcc
Q psy8029         584 PYYSIMSVNCSSASLTHMPDY-LPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNISHVDT-MYPYLN  661 (693)
Q Consensus       584 ~~~~l~~l~ls~n~l~~ip~~-~~~l~~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~L~  661 (693)
                      .+..++.+++++|+++.+|+. +..+     ..++.|+|++|+|+++++..+.  ++|+.|+|++|+|+.+++ .+.+|+
T Consensus       478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~  550 (844)
T 3j0a_A          478 GLSHLQVLYLNHNYLNSLPPGVFSHL-----TALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLS  550 (844)
T ss_dssp             CBCCEECCCCCHHHHTTCCTTSSSSC-----CSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCC
T ss_pred             CcccccEEECCCCcccccChhHccch-----hhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcC
Confidence            355689999999999977654 4555     7789999999999999998776  899999999999997766 667999


Q ss_pred             EEEeeCCceeEecCCC
Q psy8029         662 HLELIDSEKIICHGST  677 (693)
Q Consensus       662 ~L~l~~N~l~~~~~~~  677 (693)
                      .|++++|++ .|+++-
T Consensus       551 ~l~l~~Np~-~C~c~~  565 (844)
T 3j0a_A          551 VLDITHNKF-ICECEL  565 (844)
T ss_dssp             EEEEEEECC-CCSSSC
T ss_pred             EEEecCCCc-cccccc
Confidence            999999994 466653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.1e-46  Score=428.35  Aligned_cols=504  Identities=20%  Similarity=0.277  Sum_probs=365.5

Q ss_pred             EEEecCCCCCCCccCCCCCCCCCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEE
Q psy8029          27 GVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHI  106 (693)
Q Consensus        27 ~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L  106 (693)
                      .++|.+..    +..+|..--+.+++|+++++.+....-.   .+.+++.|+.|++++|  .|+.+++.+|+++++|++|
T Consensus        35 ~~~c~~~~----l~~vP~~lp~~~~~LdLs~N~i~~l~~~---~f~~l~~L~~L~Ls~N--~i~~i~~~~f~~L~~L~~L  105 (635)
T 4g8a_A           35 TYQCMELN----FYKIPDNLPFSTKNLDLSFNPLRHLGSY---SFFSFPELQVLDLSRC--EIQTIEDGAYQSLSHLSTL  105 (635)
T ss_dssp             EEECTTSC----CSSCCSSSCTTCCEEECTTSCCCEECTT---TTTTCTTCCEEECTTC--CCCEECTTTTTTCTTCCEE
T ss_pred             EEECCCCC----cCccCCCCCcCCCEEEeeCCCCCCCCHH---HHhCCCCCCEEECCCC--cCCCcChhHhcCCCCCCEE
Confidence            57786533    4456654334789999999888654321   1346788999999998  8999988889999999999


Q ss_pred             EccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccC-hhhhCCCCCCCEEEccCCC
Q psy8029         107 LLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD-PEIFKNLTSLRILNLDHNQ  185 (693)
Q Consensus       107 ~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~  185 (693)
                      +|++| +++.+++++|.++++|++|++++|+++++++..|+++++|++|++++|.++.+. +..+..+++|++|++++|+
T Consensus       106 ~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          106 ILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             ECTTC-CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             EccCC-cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence            99999 899999888999999999999999998888888899999999999999887653 5667888999999999999


Q ss_pred             CCCCChhhcCCCCC----CcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccc-cCChh--------------------
Q psy8029         186 LINLTRAIFNNVPN----LRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ-MFPKD--------------------  240 (693)
Q Consensus       186 l~~~~~~~~~~l~~----L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~--------------------  240 (693)
                      ++++.+..|..+.+    ...++++.|.++.+++..+.. ..++.+++.+|... .+...                    
T Consensus       185 l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~  263 (635)
T 4g8a_A          185 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN  263 (635)
T ss_dssp             CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred             ccccccccccchhhhhhhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence            98887766655443    346788888887776655433 23344444443211 00000                    


Q ss_pred             -------------------------------------hhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCC
Q psy8029         241 -------------------------------------LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS  283 (693)
Q Consensus       241 -------------------------------------~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~  283 (693)
                                                           .+....+++.+.+..+.  +..++.  +.....++.|++.++.
T Consensus       264 ~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~--~~~~~~L~~L~l~~~~  339 (635)
T 4g8a_A          264 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT--IERVKD--FSYNFGWQHLELVNCK  339 (635)
T ss_dssp             SCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE--EEECGG--GGSCCCCSEEEEESCE
T ss_pred             ccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccc--cccccc--cccchhhhhhhccccc
Confidence                                                 11222334444444443  222222  3445566777776666


Q ss_pred             CcccCccc-------------------ccCCCCccEEEecCCCCCCcC--ChhhhcCCCCCcEEEccCCCCCCCChhhhc
Q psy8029         284 IAELPSDL-------------------FWNSTNITNIVLTGHKKLTSL--PSTLFRDCKKLVKLELQRNKLKYLPENLFE  342 (693)
Q Consensus       284 l~~~~~~~-------------------~~~~~~L~~L~l~~n~~l~~l--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  342 (693)
                      +..++...                   +..+++|+.+++++| .+...  ....+..+.+|+.+++..+....++.. |.
T Consensus       340 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~-~~  417 (635)
T 4g8a_A          340 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN-FL  417 (635)
T ss_dssp             ESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSS-CCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC-CT
T ss_pred             ccCcCcccchhhhhcccccccCCCCcccccccccccchhhcc-ccccccccccchhhhhhhhhhhcccccccccccc-cc
Confidence            55544321                   123455555555555 33211  111223455566666666555444332 45


Q ss_pred             cCccCceEeccCCcCccccCc---cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCC
Q psy8029         343 SLKELYTLNLKNNQLENITSL---VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCV  419 (693)
Q Consensus       343 ~~~~L~~L~Ls~n~l~~l~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~  419 (693)
                      .+++|+.++++.+........   ..+++++.+++++|.+.+..+..+..++.|+.|++++|.+....   .+..|..++
T Consensus       418 ~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~---~~~~~~~l~  494 (635)
T 4g8a_A          418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELR  494 (635)
T ss_dssp             TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCT
T ss_pred             ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccccccc---Cchhhhhcc
Confidence            677788888877776654332   67889999999999999999999999999999999999755322   367889999


Q ss_pred             CCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCc
Q psy8029         420 NLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNED  499 (693)
Q Consensus       420 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~  499 (693)
                      +|++|+|++|++++++|..|.++++|++|+|++|+|+++++..+..+++|+.|||++|+|+++++..+..++        
T Consensus       495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~--------  566 (635)
T 4g8a_A          495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP--------  566 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCC--------
T ss_pred             ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhh--------
Confidence            999999999999999999999999999999999999999999999999999999999999999888877653        


Q ss_pred             cccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCC---CCccccccCCCCCcccCC
Q psy8029         500 STMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINSVRPENLTCDTK  572 (693)
Q Consensus       500 ~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~~~~l~c~~~  572 (693)
                           .+++.+++++|||.|||++.||.+|++.....      ..+...++|..|   +|..+.+++   ++|.+.
T Consensus       567 -----~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~------~~~~~~~~C~~P~~~~g~~l~~~~---~~C~~~  628 (635)
T 4g8a_A          567 -----SSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL------LVEVERMECATPSDKQGMPVLSLN---ITCQMT  628 (635)
T ss_dssp             -----TTCCEEECTTCCBCCSGGGHHHHHHHHHTTTT------BSCGGGCBBCSSTTTTTCBGGGCC---CCC---
T ss_pred             -----CcCCEEEeeCCCCcccCCcHHHHHHHHhCCCc------cCCCCCceeCCchHHCCCEeeeec---cCCCCC
Confidence                 35889999999999999999999999875321      123457899999   888888884   466653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=7.2e-47  Score=422.10  Aligned_cols=473  Identities=20%  Similarity=0.267  Sum_probs=366.7

Q ss_pred             CccCCCCCCCCCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccc
Q psy8029          38 IYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGL  117 (693)
Q Consensus        38 ~~~~l~~~~~~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~  117 (693)
                      .+..+|..-.+++++|++++|.+.......   ..++++|++|++++|  .++.+++.+|+++++|++|++++| .++++
T Consensus        16 ~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~   89 (549)
T 2z81_A           16 SFTSIPSGLTAAMKSLDLSFNKITYIGHGD---LRACANLQVLILKSS--RINTIEGDAFYSLGSLEHLDLSDN-HLSSL   89 (549)
T ss_dssp             CCSSCCSCCCTTCCEEECCSSCCCEECSST---TSSCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTS-CCCSC
T ss_pred             ccccccccCCCCccEEECcCCccCccChhh---hhcCCcccEEECCCC--CcCccChhhccccccCCEEECCCC-ccCcc
Confidence            566788766678999999999886543222   346788999999998  999888888999999999999999 99999


Q ss_pred             cccccCCCCCCcEEEeeCCcccccC-cccCCCCCCCcEEEcCCCC-CCccChhhhCCCCCCCEEEccCCCCCCCChhhcC
Q psy8029         118 HKDIFKGTPQLESLNLRGNSITELY-SGVFQYVPKLQVLDLGSND-VAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFN  195 (693)
Q Consensus       118 ~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  195 (693)
                      ++..|+++++|++|++++|.++.++ +..|+++++|++|++++|. +..+++..|.++++|++|++++|++++..+..++
T Consensus        90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  169 (549)
T 2z81_A           90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK  169 (549)
T ss_dssp             CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred             CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence            9888999999999999999998643 3458899999999999997 6777777889999999999999999988888889


Q ss_pred             CCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCC---hhhhhcccCceEEEEecCCCccc---ccCccccC
Q psy8029         196 NVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP---KDLFAEMKYLQVIKISYHKDSLK---ELPSGLFA  269 (693)
Q Consensus       196 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~~~L~~L~l~~n~~~~~---~i~~~~~~  269 (693)
                      .+++|++|++++|.+..++...+..+++|++|++++|.++.++   ......+++|+.|++++|.+...   .++. .+.
T Consensus       170 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-~~~  248 (549)
T 2z81_A          170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK-LLR  248 (549)
T ss_dssp             TCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG-GGG
T ss_pred             ccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHH-Hhh
Confidence            9999999999999888776655567899999999999988652   23344578899999998864321   1111 123


Q ss_pred             CCCCccEEEcCCCCCcccCc-----------------------------------ccccCCCCccEEEecCCCCCCcCCh
Q psy8029         270 NLPLLNTVILGESSIAELPS-----------------------------------DLFWNSTNITNIVLTGHKKLTSLPS  314 (693)
Q Consensus       270 ~l~~L~~L~l~~n~l~~~~~-----------------------------------~~~~~~~~L~~L~l~~n~~l~~l~~  314 (693)
                      .+++|+.+++++|.+.+++.                                   ..+....+|+.+++++| .++.+|.
T Consensus       249 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~ip~  327 (549)
T 2z81_A          249 YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLVPC  327 (549)
T ss_dssp             GCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCCCCH
T ss_pred             hhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC-ccccCCH
Confidence            44555666655554433210                                   11223457888888888 7888888


Q ss_pred             hhhcCCCCCcEEEccCCCCCCCC---hhhhccCccCceEeccCCcCccccC----ccCCCCCCeEeCCCCcccccccccc
Q psy8029         315 TLFRDCKKLVKLELQRNKLKYLP---ENLFESLKELYTLNLKNNQLENITS----LVGLSGLNSLDLSWNQLEQINLIAF  387 (693)
Q Consensus       315 ~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~~~~L~~L~Ls~n~l~~l~~----~~~l~~L~~L~Ls~n~l~~~~~~~~  387 (693)
                      .+|..+++|++|++++|.++...   ...+..+++|+.|++++|++++++.    ...+++|++|++++|.+++++ ..+
T Consensus       328 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~  406 (549)
T 2z81_A          328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP-DSC  406 (549)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCC-SCC
T ss_pred             HHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCC-hhh
Confidence            87777888999999999887532   1225678889999999998888753    377888999999999888654 467


Q ss_pred             CCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCC
Q psy8029         388 DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVS  467 (693)
Q Consensus       388 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  467 (693)
                      ..+++|++|++++|.++...     ..+  .++|++|++++|++++++    ..+++|++|++++|+|+.++..  ..++
T Consensus       407 ~~~~~L~~L~Ls~N~l~~l~-----~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~ip~~--~~l~  473 (549)
T 2z81_A          407 QWPEKMRFLNLSSTGIRVVK-----TCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTLPDA--SLFP  473 (549)
T ss_dssp             CCCTTCCEEECTTSCCSCCC-----TTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCCCG--GGCT
T ss_pred             cccccccEEECCCCCccccc-----chh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccCcCCCc--ccCc
Confidence            77888999999999887542     111  268999999999998864    4789999999999999988763  5789


Q ss_pred             CccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCc-HHHHHHHhcccccceeeeeeecc
Q psy8029         468 NKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSN-YDLIRFVSKKMTKTVYQMLELVT  546 (693)
Q Consensus       468 ~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~-~~~~~~~~~~~~~~~~~~~~~~~  546 (693)
                      +|+.|++++|+++++++..+..+              .+++.+++++|||.|+|+. .|+.+|+......        ..
T Consensus       474 ~L~~L~Ls~N~l~~~~~~~~~~l--------------~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~~~~--------~~  531 (549)
T 2z81_A          474 VLLVMKISRNQLKSVPDGIFDRL--------------TSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK--------EQ  531 (549)
T ss_dssp             TCCEEECCSSCCCCCCTTGGGGC--------------TTCCEEECCSSCBCCCHHHHHHHHHHHHHCTTT--------EE
T ss_pred             cCCEEecCCCccCCcCHHHHhcC--------------cccCEEEecCCCccCCCccHHHHHHHHHhcccc--------cC
Confidence            99999999999999888777665              4588999999999999994 5777898764322        22


Q ss_pred             CceeecCC
Q psy8029         547 DNLECFGN  554 (693)
Q Consensus       547 ~~~~c~~~  554 (693)
                      ..+.|..|
T Consensus       532 ~~~~C~~~  539 (549)
T 2z81_A          532 GSAKCSGS  539 (549)
T ss_dssp             SCCBBTTT
T ss_pred             CCCeECCC
Confidence            45677665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.9e-47  Score=425.55  Aligned_cols=493  Identities=18%  Similarity=0.220  Sum_probs=324.2

Q ss_pred             ccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcE
Q psy8029          75 TTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQV  154 (693)
Q Consensus        75 ~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  154 (693)
                      +.++.|+++++  .++.+++.+|.++++|++|++++| .++++++++|+++++|++|++++|.++.+++..|+++++|++
T Consensus        28 ~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (570)
T 2z63_A           28 FSTKNLDLSFN--PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  104 (570)
T ss_dssp             SSCCEEECCSC--CCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             ccccEEEccCC--ccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence            45788888888  888888778888888888888888 888888888888888888888888888888777888888888


Q ss_pred             EEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCC-hhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCC----cEEEc
Q psy8029         155 LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLT-RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKL----QTFYA  229 (693)
Q Consensus       155 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L----~~L~l  229 (693)
                      |++++|.++.+++..|+++++|++|++++|.++++. +..|+++++|++|++++|.++.+++..++.+++|    +.+++
T Consensus       105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l  184 (570)
T 2z63_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (570)
T ss_dssp             EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred             ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence            888888888877766888888888888888887643 5667888888888888888888777777777777    78888


Q ss_pred             CCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCC------CCcccCcccccCCC--CccEE
Q psy8029         230 NSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES------SIAELPSDLFWNST--NITNI  301 (693)
Q Consensus       230 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n------~l~~~~~~~~~~~~--~L~~L  301 (693)
                      ++|.++.+++..|... +|++|++++|......++. .+..++.++...+...      .+..++...|.++.  .++.+
T Consensus       185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~-~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l  262 (570)
T 2z63_A          185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKT-CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF  262 (570)
T ss_dssp             TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHH-HHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred             CCCCceecCHHHhccC-cceeEecccccccccchhh-hhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence            8888888777777655 7888888887543333332 2455666655544321      12233333333333  23455


Q ss_pred             EecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCcccc
Q psy8029         302 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQ  381 (693)
Q Consensus       302 ~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~  381 (693)
                      ++.++..+.......|..+++|++|++++|.++.+|... ..+ +|+.|++++|.+..+|. ..+++|++|++++|.+.+
T Consensus       263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~-~~~-~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~~~~  339 (570)
T 2z63_A          263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS-YNF-GWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGN  339 (570)
T ss_dssp             EEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCC-SCC-CCSEEEEESCBCSSCCB-CBCSSCCEEEEESCBSCC
T ss_pred             hhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhh-ccC-CccEEeeccCcccccCc-ccccccCEEeCcCCcccc
Confidence            555543333333344566677777777777776666543 444 77777777777766655 456667777777776665


Q ss_pred             ccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCC-
Q psy8029         382 INLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPD-  460 (693)
Q Consensus       382 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-  460 (693)
                      ..+.  ..+++|++|++++|.++....  .+..+..+++|++|++++|.++++++. +..+++|+.|++++|++++.++ 
T Consensus       340 ~~~~--~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~  414 (570)
T 2z63_A          340 AFSE--VDLPSLEFLDLSRNGLSFKGC--CSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF  414 (570)
T ss_dssp             BCCC--CBCTTCCEEECCSSCCBEEEE--EEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTS
T ss_pred             cccc--ccCCCCCEEeCcCCccCcccc--ccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccch
Confidence            4443  456677777777776664310  123455666777777777777666555 6667777777777777766544 


Q ss_pred             cccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceee
Q psy8029         461 QLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQ  540 (693)
Q Consensus       461 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~  540 (693)
                      ..+..+++|+.|++++|+++...+..+..+              ++++.+++++|.+.-            +.       
T Consensus       415 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------~~L~~L~l~~n~l~~------------~~-------  461 (570)
T 2z63_A          415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGL--------------SSLEVLKMAGNSFQE------------NF-------  461 (570)
T ss_dssp             CTTTTCTTCCEEECTTSCCEECCTTTTTTC--------------TTCCEEECTTCEEGG------------GE-------
T ss_pred             hhhhcCCCCCEEeCcCCcccccchhhhhcC--------------CcCcEEECcCCcCcc------------cc-------
Confidence            345666667777777777666555444433              346666666665320            00       


Q ss_pred             eeeeccCceeecCCCCccccccCCCCCcccCCCCCCCcEeeecCCCceEEEEcCCCCcccC-CCCCCCCccccCceEEEE
Q psy8029         541 MLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHM-PDYLPVTYEDKKATSIQL  619 (693)
Q Consensus       541 ~~~~~~~~~~c~~~~~~~~~~l~~~~l~c~~~~cp~~~~~~~~~~~~l~~l~ls~n~l~~i-p~~~~~l~~~~~~~l~~L  619 (693)
                                           ++ .               .+..+..++.+++++|+++.+ |..+..+     ..++.|
T Consensus       462 ---------------------~p-~---------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L  499 (570)
T 2z63_A          462 ---------------------LP-D---------------IFTELRNLTFLDLSQCQLEQLSPTAFNSL-----SSLQVL  499 (570)
T ss_dssp             ---------------------EC-S---------------CCTTCTTCCEEECTTSCCCEECTTTTTTC-----TTCCEE
T ss_pred             ---------------------ch-h---------------hhhcccCCCEEECCCCccccCChhhhhcc-----cCCCEE
Confidence                                 00 0               011123366667777766644 5455544     556667


Q ss_pred             EecCCccccCCCCCCcccccCcEEEccCCccc-cccC
Q psy8029         620 ILHNNSINHFLESPPESYKLITDLDLSYNNIS-HVDT  655 (693)
Q Consensus       620 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~  655 (693)
                      ++++|+++++++..++++++|+.|++++|+++ .+|.
T Consensus       500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            77777777766666666677777777777766 4443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=6.4e-46  Score=414.39  Aligned_cols=481  Identities=18%  Similarity=0.228  Sum_probs=387.2

Q ss_pred             EEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcC
Q psy8029          79 TLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLG  158 (693)
Q Consensus        79 ~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls  158 (693)
                      ..+.+++  .++.++...+   ++|++|++++| .++++++..|.++++|++|++++|+++++++.+|.++++|++|+++
T Consensus         9 ~c~~~~~--~l~~ip~~~~---~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls   82 (549)
T 2z81_A            9 VCDGRSR--SFTSIPSGLT---AAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS   82 (549)
T ss_dssp             EEECTTS--CCSSCCSCCC---TTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             eEECCCC--ccccccccCC---CCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC
Confidence            3466666  8888885433   78999999999 8999888889999999999999999999888889999999999999


Q ss_pred             CCCCCccChhhhCCCCCCCEEEccCCCCCCCC-hhhcCCCCCCcEEECcCCC-CCcCCCCcCCCCCCCcEEEcCCCcccc
Q psy8029         159 SNDVAYMDPEIFKNLTSLRILNLDHNQLINLT-RAIFNNVPNLRSLDISGNN-ISILPSGVFSDLRKLQTFYANSNRFQM  236 (693)
Q Consensus       159 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~  236 (693)
                      +|.++++++..|+++++|++|++++|+++++. +..|+++++|++|++++|. +..+++..|.++++|++|++++|.++.
T Consensus        83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A           83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence            99999999988999999999999999998653 3568899999999999998 677777778999999999999999988


Q ss_pred             CChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCccc---CcccccCCCCccEEEecCCCCCCcCC
Q psy8029         237 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL---PSDLFWNSTNITNIVLTGHKKLTSLP  313 (693)
Q Consensus       237 ~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~~l~~l~  313 (693)
                      ..+..+..+++|++|+++.|.  ...++...+..+++|++|++++|.+.++   +......+++|+.|++++| .++...
T Consensus       163 ~~~~~l~~l~~L~~L~l~~n~--~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~  239 (549)
T 2z81_A          163 YQSQSLKSIRDIHHLTLHLSE--SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS-VLTDES  239 (549)
T ss_dssp             ECTTTTTTCSEEEEEEEECSB--STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC-EEEHHH
T ss_pred             cChhhhhccccCceEecccCc--ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc-ccchhH
Confidence            777778889999999999988  5567776667789999999999998875   3334456788999999988 554321


Q ss_pred             h----hhhcCCCCCcEEEccCCCCCCCCh------hhhccCccCceEeccCCcCccccCc-------cCCCCCCeEeCCC
Q psy8029         314 S----TLFRDCKKLVKLELQRNKLKYLPE------NLFESLKELYTLNLKNNQLENITSL-------VGLSGLNSLDLSW  376 (693)
Q Consensus       314 ~----~~~~~~~~L~~L~l~~n~l~~~~~------~~~~~~~~L~~L~Ls~n~l~~l~~~-------~~l~~L~~L~Ls~  376 (693)
                      .    ..+..+++|+.+++++|.+..++.      ..+..+.+++.|++.++.+......       ...++|++|++++
T Consensus       240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~  319 (549)
T 2z81_A          240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN  319 (549)
T ss_dssp             HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred             HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence            1    123567899999999997654321      2245678899999999887664322       3356899999999


Q ss_pred             CccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCCh--hHHhcCCCCcEEECCCCC
Q psy8029         377 NQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD--DWISSMTSLKELDLRHNN  454 (693)
Q Consensus       377 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~N~  454 (693)
                      |.+..++...+..+++|++|++++|.+++..+. ....+..+++|++|++++|+++++++  ..+..+++|++|++++|+
T Consensus       320 n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~  398 (549)
T 2z81_A          320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK-NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT  398 (549)
T ss_dssp             SCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHH-HHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             CccccCCHHHHhcCccccEEEccCCcccccccc-chhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC
Confidence            999988776667899999999999999864210 02346788999999999999998864  568899999999999999


Q ss_pred             CccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhccc
Q psy8029         455 FSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKM  534 (693)
Q Consensus       455 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~  534 (693)
                      +++++.. +..+++|+.|++++|+++.++....                 ++++.+++++|.+.-               
T Consensus       399 l~~lp~~-~~~~~~L~~L~Ls~N~l~~l~~~~~-----------------~~L~~L~Ls~N~l~~---------------  445 (549)
T 2z81_A          399 FHPMPDS-CQWPEKMRFLNLSSTGIRVVKTCIP-----------------QTLEVLDVSNNNLDS---------------  445 (549)
T ss_dssp             CCCCCSC-CCCCTTCCEEECTTSCCSCCCTTSC-----------------TTCSEEECCSSCCSC---------------
T ss_pred             CccCChh-hcccccccEEECCCCCcccccchhc-----------------CCceEEECCCCChhh---------------
Confidence            9988764 6778999999999999987643221                 358899999997531               


Q ss_pred             ccceeeeeeeccCceeecCCCCccccccCCCCCcccCCCCCCCcEeeecCCCceEEEEcCCCCcccCCCCCCCCccccCc
Q psy8029         535 TKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKA  614 (693)
Q Consensus       535 ~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~l~c~~~~cp~~~~~~~~~~~~l~~l~ls~n~l~~ip~~~~~l~~~~~~  614 (693)
                                                 +.                   ..+..++.+++++|+++.||+. ..+     .
T Consensus       446 ---------------------------~~-------------------~~l~~L~~L~Ls~N~l~~ip~~-~~l-----~  473 (549)
T 2z81_A          446 ---------------------------FS-------------------LFLPRLQELYISRNKLKTLPDA-SLF-----P  473 (549)
T ss_dssp             ---------------------------CC-------------------CCCTTCCEEECCSSCCSSCCCG-GGC-----T
T ss_pred             ---------------------------hc-------------------ccCChhcEEECCCCccCcCCCc-ccC-----c
Confidence                                       00                   0123478999999999999873 233     6


Q ss_pred             eEEEEEecCCccccCCCCCCcccccCcEEEccCCccc-ccc
Q psy8029         615 TSIQLILHNNSINHFLESPPESYKLITDLDLSYNNIS-HVD  654 (693)
Q Consensus       615 ~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~  654 (693)
                      .++.|+|++|++++++|..++++++|+.|++++|+++ ..|
T Consensus       474 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          474 VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             TCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             cCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            7889999999999999988999999999999999998 666

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.7e-45  Score=406.41  Aligned_cols=467  Identities=16%  Similarity=0.195  Sum_probs=346.4

Q ss_pred             CCCCCCCCCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCccccccc
Q psy8029          41 RLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKD  120 (693)
Q Consensus        41 ~l~~~~~~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~  120 (693)
                      .+|..-.+++++|++++|.+.......+   .+++.|++|++++|  .++.+.+..|+++++|++|++++| .++.++..
T Consensus        14 ~ip~~~~~~L~~L~Ls~n~i~~~~~~~~---~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~   87 (520)
T 2z7x_B           14 HVPKDLSQKTTILNISQNYISELWTSDI---LSLSKLRILIISHN--RIQYLDISVFKFNQELEYLDLSHN-KLVKISCH   87 (520)
T ss_dssp             SCCCSCCTTCSEEECCSSCCCCCCHHHH---TTCTTCCEEECCSS--CCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC
T ss_pred             cccccccccccEEECCCCcccccChhhc---cccccccEEecCCC--ccCCcChHHhhcccCCCEEecCCC-ceeecCcc
Confidence            4554434677777777777765433322   35667777777777  777776677777777777777777 77777654


Q ss_pred             ccCCCCCCcEEEeeCCcccccC-cccCCCCCCCcEEEcCCCCCCccChhhhCCCCCC--CEEEccCCCC--CCCChhhcC
Q psy8029         121 IFKGTPQLESLNLRGNSITELY-SGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSL--RILNLDHNQL--INLTRAIFN  195 (693)
Q Consensus       121 ~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~  195 (693)
                         .+++|++|++++|.+++++ +..|+++++|++|++++|.+.+   ..+..+++|  ++|++++|++  .+..+..+.
T Consensus        88 ---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~  161 (520)
T 2z7x_B           88 ---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ  161 (520)
T ss_dssp             ---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTT
T ss_pred             ---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccccc
Confidence               6777777777777777643 3456777777777777777665   235556666  7777777777  555555555


Q ss_pred             CCC-CCcEEECcCCCCCc-CCCCcCCCCCCCcEEEcCCCc-------cccCChhhhhcccCceEEEEecCCCcccc---c
Q psy8029         196 NVP-NLRSLDISGNNISI-LPSGVFSDLRKLQTFYANSNR-------FQMFPKDLFAEMKYLQVIKISYHKDSLKE---L  263 (693)
Q Consensus       196 ~l~-~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~~~~L~~L~l~~n~~~~~~---i  263 (693)
                      .+. ....+++++|.+.+ ++...+..+++|+.+++++|.       +.+..+ .+..+++|+.|++++|.+....   +
T Consensus       162 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~  240 (520)
T 2z7x_B          162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRI  240 (520)
T ss_dssp             TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHH
T ss_pred             ccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHH
Confidence            544 23355666666553 445556778888888888876       333323 4678889999999887643211   1


Q ss_pred             CccccCCCCCccEEEcCCCCCc-ccCcccc----cCCCCccEEEecCCCCCCcCChhhhcCC---CCCcEEEccCCCCCC
Q psy8029         264 PSGLFANLPLLNTVILGESSIA-ELPSDLF----WNSTNITNIVLTGHKKLTSLPSTLFRDC---KKLVKLELQRNKLKY  335 (693)
Q Consensus       264 ~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~----~~~~~L~~L~l~~n~~l~~l~~~~~~~~---~~L~~L~l~~n~l~~  335 (693)
                      ....  ..++|++|++++|.+. .+|..+|    ..+++|+.+++++| .+ .+|...+..+   .+|++|++++|.+..
T Consensus       241 ~~~~--~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n-~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~  316 (520)
T 2z7x_B          241 LQLV--WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD-VF-GFPQSYIYEIFSNMNIKNFTVSGTRMVH  316 (520)
T ss_dssp             HHHH--HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEEC-CC-CSCTHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred             HHHh--hhCcccEEEeecccccCccccchhhcccccCceeEecccccc-ce-ecchhhhhcccccCceeEEEcCCCcccc
Confidence            1111  2458999999999988 5665554    78899999999999 66 7774333333   679999999999877


Q ss_pred             CChhhhccCccCceEeccCCcCcc-ccCc-cCCCCCCeEeCCCCcccccc--ccccCCCCCCcEEECCCCcCcccccccC
Q psy8029         336 LPENLFESLKELYTLNLKNNQLEN-ITSL-VGLSGLNSLDLSWNQLEQIN--LIAFDGLSSLNTVDLSHNLLTFDEYQYG  411 (693)
Q Consensus       336 ~~~~~~~~~~~L~~L~Ls~n~l~~-l~~~-~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~  411 (693)
                      ++.  +..+++|++|++++|++++ ++.. ..+++|++|++++|.++++.  +..+..+++|++|++++|.++...   .
T Consensus       317 ~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l---~  391 (520)
T 2z7x_B          317 MLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE---K  391 (520)
T ss_dssp             CCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG---G
T ss_pred             ccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc---c
Confidence            653  3678999999999999998 4443 88999999999999999854  467899999999999999999621   2


Q ss_pred             CCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhc
Q psy8029         412 YSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKA  491 (693)
Q Consensus       412 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  491 (693)
                      ...+..+++|++|++++|.+++..+..+.  ++|+.|++++|+|+.++...+ .+++|+.|++++|+|+.++...+..+ 
T Consensus       392 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l-  467 (520)
T 2z7x_B          392 KGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRL-  467 (520)
T ss_dssp             GCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTC-
T ss_pred             cchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCCccCHHHhccC-
Confidence            34578889999999999999887665443  799999999999998887654 89999999999999998877655444 


Q ss_pred             ccCCCCCccccccccCcEEEcCCCcccccCCcHHH-HHHHhcccccceeeeeeeccCceeecCC
Q psy8029         492 AAQDPNEDSTMVARSANIVILNDNPIACNCSNYDL-IRFVSKKMTKTVYQMLELVTDNLECFGN  554 (693)
Q Consensus       492 ~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~c~~~  554 (693)
                                   ++++.+++++|||.|+|++.|| ..|+.+....        ....+.|..|
T Consensus       468 -------------~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~--------~~~~~~C~~p  510 (520)
T 2z7x_B          468 -------------TSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK--------EQGSAKCSGS  510 (520)
T ss_dssp             -------------TTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTT--------EESCCBBTTT
T ss_pred             -------------CcccEEECcCCCCcccCCchHHHHHHHHhcccc--------CCCCCCcCCc
Confidence                         4588999999999999999999 8998775321        2356788776

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3e-43  Score=400.06  Aligned_cols=517  Identities=20%  Similarity=0.236  Sum_probs=396.0

Q ss_pred             ccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcE
Q psy8029          75 TTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQV  154 (693)
Q Consensus        75 ~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  154 (693)
                      +.+++|+|++|  .|+.+++.+|+++++|++|+|++| +|+.+++++|.++++|++|+|++|+++.+++++|.++++|++
T Consensus        52 ~~~~~LdLs~N--~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~  128 (635)
T 4g8a_A           52 FSTKNLDLSFN--PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  128 (635)
T ss_dssp             TTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred             cCCCEEEeeCC--CCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence            36899999998  999999889999999999999999 999999999999999999999999999999888999999999


Q ss_pred             EEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCC-hhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCC----cEEEc
Q psy8029         155 LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLT-RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKL----QTFYA  229 (693)
Q Consensus       155 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L----~~L~l  229 (693)
                      |++++|.++++++..|+++++|++|++++|+++.+. +..++.+++|++|++++|+++++.+..|..++++    ..+++
T Consensus       129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l  208 (635)
T 4g8a_A          129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  208 (635)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred             EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence            999999999998888999999999999999988654 4667888999999999999998887776655443    46888


Q ss_pred             CCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCC------CCcccCcccccCCCCccEEEe
Q psy8029         230 NSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES------SIAELPSDLFWNSTNITNIVL  303 (693)
Q Consensus       230 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n------~l~~~~~~~~~~~~~L~~L~l  303 (693)
                      +.|.+..+++..+.. ..++.+++.+|.... .+....+..+..++...+..+      .+.......+.....+....+
T Consensus       209 s~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~-~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l  286 (635)
T 4g8a_A          209 SLNPMNFIQPGAFKE-IRLHKLTLRNNFDSL-NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF  286 (635)
T ss_dssp             TTCCCCEECTTTTTT-CEEEEEEEESCCSSH-HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred             ccCcccccCcccccc-hhhhhhhhhcccccc-cccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence            999988888776543 457788888876433 333444667777766655332      223333344445555666555


Q ss_pred             cCCCCCCcC---ChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccc
Q psy8029         304 TGHKKLTSL---PSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLE  380 (693)
Q Consensus       304 ~~n~~l~~l---~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~  380 (693)
                      ..+ .....   ....|..+.+++.+++.++.+..+..  +.....++.|++.+|.+..++. ..+..|+.+++++|.+.
T Consensus       287 ~~~-~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~-~~l~~L~~l~l~~n~~~  362 (635)
T 4g8a_A          287 RLA-YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGG  362 (635)
T ss_dssp             EEE-CCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--GGSCCCCSEEEEESCEESSCCC-CBCTTCCEEEEESCCSC
T ss_pred             hhh-hhcccccchhhhhhhhcccccccccccccccccc--cccchhhhhhhcccccccCcCc-ccchhhhhcccccccCC
Confidence            543 22111   12234567789999999988777665  5567889999999998887665 35678889999988877


Q ss_pred             cccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccC-C
Q psy8029         381 QINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFI-P  459 (693)
Q Consensus       381 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~  459 (693)
                      ...  .+..+++|+.|++++|.+.....  .+..+..+.+|++++++.+.+....+. +..+++|+.+++++|..... +
T Consensus       363 ~~~--~~~~l~~L~~L~ls~n~l~~~~~--~~~~~~~~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~  437 (635)
T 4g8a_A          363 NAF--SEVDLPSLEFLDLSRNGLSFKGC--CSQSDFGTISLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSE  437 (635)
T ss_dssp             CBC--CCCBCTTCCEEECCSSCCBEEEE--CCHHHHSCSCCCEEECCSCSEEEECSC-CTTCTTCCEEECTTSEEESTTS
T ss_pred             CCc--ccccccccccchhhccccccccc--cccchhhhhhhhhhhcccccccccccc-ccccccccchhhhhcccccccc
Confidence            654  34568899999999998875432  234456678999999999988776554 67889999999998877654 4


Q ss_pred             CcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhccccccee
Q psy8029         460 DQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVY  539 (693)
Q Consensus       460 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~  539 (693)
                      ...+..++.++.+++++|+++...+..+...              ..++.+++++|.+.-             .      
T Consensus       438 ~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~--------------~~L~~L~Ls~N~~~~-------------~------  484 (635)
T 4g8a_A          438 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGL--------------SSLEVLKMAGNSFQE-------------N------  484 (635)
T ss_dssp             SCTTTTCTTCCEEECTTSCCEECCTTTTTTC--------------TTCCEEECTTCEEGG-------------G------
T ss_pred             ccccccccccccccccccccccccccccccc--------------hhhhhhhhhhccccc-------------c------
Confidence            4557788889999999999998877666544              457899999987420             0      


Q ss_pred             eeeeeccCceeecCCCCccccccCCCCCcccCCCCCCCcEeeecCCCceEEEEcCCCCcccC-CCCCCCCccccCceEEE
Q psy8029         540 QMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHM-PDYLPVTYEDKKATSIQ  618 (693)
Q Consensus       540 ~~~~~~~~~~~c~~~~~~~~~~l~~~~l~c~~~~cp~~~~~~~~~~~~l~~l~ls~n~l~~i-p~~~~~l~~~~~~~l~~  618 (693)
                                            +.+.               .+..+.+++++++++|+++.+ |..+..+     .+|++
T Consensus       485 ----------------------~~~~---------------~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l-----~~L~~  522 (635)
T 4g8a_A          485 ----------------------FLPD---------------IFTELRNLTFLDLSQCQLEQLSPTAFNSL-----SSLQV  522 (635)
T ss_dssp             ----------------------EECS---------------CCTTCTTCCEEECTTSCCCEECTTTTTTC-----TTCCE
T ss_pred             ----------------------cCch---------------hhhhccccCEEECCCCccCCcChHHHcCC-----CCCCE
Confidence                                  0000               012244588999999999966 5556666     77899


Q ss_pred             EEecCCccccCCCCCCcccccCcEEEccCCccccccC-----cCCCccEEEeeCCceeEecCCCcccc
Q psy8029         619 LILHNNSINHFLESPPESYKLITDLDLSYNNISHVDT-----MYPYLNHLELIDSEKIICHGSTKPLN  681 (693)
Q Consensus       619 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-----~~~~L~~L~l~~N~l~~~~~~~~~~~  681 (693)
                      |+|++|+|+++++..|+++++|+.|||++|+|+.+++     .+++|++|+|++|| +.|+|+-+.+.
T Consensus       523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np-~~C~C~~~~~~  589 (635)
T 4g8a_A          523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND-FACTCEHQSFL  589 (635)
T ss_dssp             EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC-BCCSGGGHHHH
T ss_pred             EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC-CcccCCcHHHH
Confidence            9999999999999999999999999999999997766     34789999999999 67888765543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=4e-43  Score=392.24  Aligned_cols=474  Identities=19%  Similarity=0.198  Sum_probs=346.3

Q ss_pred             CCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCC
Q psy8029          48 GPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQ  127 (693)
Q Consensus        48 ~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~  127 (693)
                      ...+.++++++.+....     ... .+.++.|++++|  .++.+++..|+++++|++|++++| .++++++++|.++++
T Consensus        31 ~~~~~l~ls~~~L~~ip-----~~~-~~~L~~L~Ls~N--~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~  101 (562)
T 3a79_B           31 ELESMVDYSNRNLTHVP-----KDL-PPRTKALSLSQN--SISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQD  101 (562)
T ss_dssp             --CCEEECTTSCCCSCC-----TTS-CTTCCEEECCSS--CCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTT
T ss_pred             CCCcEEEcCCCCCccCC-----CCC-CCCcCEEECCCC--CccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCC
Confidence            44578999999887532     111 267999999999  999998889999999999999999 999998888999999


Q ss_pred             CcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccC-hhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECc
Q psy8029         128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD-PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDIS  206 (693)
Q Consensus       128 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  206 (693)
                      |++|++++|+++.+|..   .+++|++|++++|.+++++ +..|+++++|++|++++|+++......+..+ +|++|+++
T Consensus       102 L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~  177 (562)
T 3a79_B          102 LEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLD  177 (562)
T ss_dssp             CCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEE
T ss_pred             CCEEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEee
Confidence            99999999999988875   7899999999999999876 4778999999999999999887543333333 44999999


Q ss_pred             CCCC--CcCCCCcCCCCC-CCcEEEcCCCcccc-CChhhhhcccCceEEEEecC--------------------------
Q psy8029         207 GNNI--SILPSGVFSDLR-KLQTFYANSNRFQM-FPKDLFAEMKYLQVIKISYH--------------------------  256 (693)
Q Consensus       207 ~n~i--~~~~~~~~~~l~-~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n--------------------------  256 (693)
                      +|.+  +...+..+..+. ..-.+++++|.+.. ++...+..+++|+.+++++|                          
T Consensus       178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~  257 (562)
T 3a79_B          178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ  257 (562)
T ss_dssp             ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred             cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence            9988  666655555433 01133444444432 33333344455555555544                          


Q ss_pred             --CCcc---cccCccccCCCCCccEEEcCCCCCc-ccCcccc----cCCCCccEEEecCCCCCCcCChhhhcC---CCCC
Q psy8029         257 --KDSL---KELPSGLFANLPLLNTVILGESSIA-ELPSDLF----WNSTNITNIVLTGHKKLTSLPSTLFRD---CKKL  323 (693)
Q Consensus       257 --~~~~---~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~----~~~~~L~~L~l~~n~~l~~l~~~~~~~---~~~L  323 (693)
                        .+..   ..+++.  ...++|++|++++|.+. .+|...|    ..++.|+.+++..+ .+ .+|...+..   ..+|
T Consensus       258 ~~~l~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~-~~-~~p~~~~~~~~~~~~L  333 (562)
T 3a79_B          258 HIETTWKCSVKLFQF--FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ-VF-LFSKEALYSVFAEMNI  333 (562)
T ss_dssp             EEEECHHHHHHHHHH--HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEEC-CC-SSCHHHHHHHHHTCCC
T ss_pred             CCcCcHHHHHHHHHh--hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccc-ee-ecChhhhhhhhccCcc
Confidence              2111   011111  12347888888888877 4665543    55666666666666 44 566332222   2679


Q ss_pred             cEEEccCCCCCCCChhhhccCccCceEeccCCcCcc-ccCc-cCCCCCCeEeCCCCcccccc--ccccCCCCCCcEEECC
Q psy8029         324 VKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN-ITSL-VGLSGLNSLDLSWNQLEQIN--LIAFDGLSSLNTVDLS  399 (693)
Q Consensus       324 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-l~~~-~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~  399 (693)
                      ++|++++|.+..++.  +..+++|++|++++|++++ ++.. ..+++|++|++++|.++++.  +..|..+++|++|+++
T Consensus       334 ~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~  411 (562)
T 3a79_B          334 KMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS  411 (562)
T ss_dssp             SEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred             eEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence            999999998876552  2678999999999999998 4443 88999999999999999865  4668999999999999


Q ss_pred             CCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCC
Q psy8029         400 HNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI  479 (693)
Q Consensus       400 ~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  479 (693)
                      +|.++...   ....+..+++|++|++++|.+++..+..+.  ++|+.|++++|+|+.++...+ .+++|+.|++++|++
T Consensus       412 ~N~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l  485 (562)
T 3a79_B          412 LNSLNSHA---YDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQL  485 (562)
T ss_dssp             TSCCBSCC---SSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCC
T ss_pred             CCcCCCcc---ChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCC
Confidence            99998621   245688899999999999999876654332  799999999999999988765 899999999999999


Q ss_pred             ceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHH-HHhcccccceee-eeeeccCceeecCCCCc
Q psy8029         480 AIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIR-FVSKKMTKTVYQ-MLELVTDNLECFGNAGV  557 (693)
Q Consensus       480 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~c~~~~~~  557 (693)
                      +.++...+..+              ++++.+++++|||.|+|++.|+.+ |..... ..+.. .-......++|.. +|.
T Consensus       486 ~~l~~~~~~~l--------------~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~C~~-~g~  549 (562)
T 3a79_B          486 KSVPDGVFDRL--------------TSLQYIWLHDNPWDCTCPGIRYLSEWINKHS-GVVRNSAGSVAPDSAKCSG-SGK  549 (562)
T ss_dssp             CCCCTTSTTTC--------------TTCCCEECCSCCBCCCHHHHHHHHHHHHHTT-TTEECSSSSBCSSSSCBSS-SCC
T ss_pred             CCCCHHHHhcC--------------CCCCEEEecCCCcCCCcchHHHHHHHHHhcC-CcccccccCCCCCCCccCC-CCc
Confidence            98877655544              458899999999999999999976 865532 11110 0002344567765 555


Q ss_pred             ccccc
Q psy8029         558 GINSV  562 (693)
Q Consensus       558 ~~~~l  562 (693)
                      .+.++
T Consensus       550 ~l~~~  554 (562)
T 3a79_B          550 PVRSI  554 (562)
T ss_dssp             CTTTC
T ss_pred             Eeeee
Confidence            55544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.3e-42  Score=392.26  Aligned_cols=434  Identities=18%  Similarity=0.245  Sum_probs=349.5

Q ss_pred             EeccCCe---EEEEecCCCCCCCccCCCCCCCCCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCc
Q psy8029          19 EIDCSHF---VGVENSSSSNGSIYDRLPEQNLGPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPP   95 (693)
Q Consensus        19 ~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~   95 (693)
                      ..+||.|   .+|.|...              ++|+.|+++++.+...--.   ....++.|+.|++++|  .++.-+ .
T Consensus        63 ~~~~c~w~~~~GV~C~~~--------------~~V~~L~L~~~~l~g~lp~---~l~~L~~L~~L~Ls~N--~~~~~~-~  122 (636)
T 4eco_A           63 NKELDMWGAQPGVSLNSN--------------GRVTGLSLEGFGASGRVPD---AIGQLTELEVLALGSH--GEKVNE-R  122 (636)
T ss_dssp             SSCGGGTTCCTTEEECTT--------------CCEEEEECTTSCCEEEECG---GGGGCTTCCEEESCCG--GGGGTC-C
T ss_pred             CCCcccccCCCCeEEcCC--------------CCEEEEEecCcccCCcCCh---HHhcCccceEEECcCC--ccccCC-c
Confidence            3678888   88888431              5789999999988643222   2346889999999988  552110 0


Q ss_pred             cCC-----------------------------------------------------CcccccEEEcc--CCcCccccccc
Q psy8029          96 YFD-----------------------------------------------------GLHFVKHILLS--HNKEITGLHKD  120 (693)
Q Consensus        96 ~~~-----------------------------------------------------~l~~L~~L~Ls--~n~~i~~~~~~  120 (693)
                      .++                                                     ....++.+.+.  +| +++++|. 
T Consensus       123 ~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n-~l~~ip~-  200 (636)
T 4eco_A          123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN-NITFVSK-  200 (636)
T ss_dssp             SBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSC-EEEEECG-
T ss_pred             cccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccC-CCccCCH-
Confidence            011                                                     01112222222  45 7878665 


Q ss_pred             ccCCCCCCcEEEeeCCcccc------------------cCcccCC--CCCCCcEEEcCCCCCCccChhhhCCCCCCCEEE
Q psy8029         121 IFKGTPQLESLNLRGNSITE------------------LYSGVFQ--YVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILN  180 (693)
Q Consensus       121 ~~~~l~~L~~L~L~~n~i~~------------------~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  180 (693)
                      .|+++++|++|+|++|.+++                  +|.. ++  ++++|++|++++|.+.+..|..|.++++|++|+
T Consensus       201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  279 (636)
T 4eco_A          201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN  279 (636)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred             HHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence            58999999999999999998                  7765 57  899999999999998888888899999999999


Q ss_pred             ccCCC-CCC-CChhhcCCC------CCCcEEECcCCCCCcCCC-CcCCCCCCCcEEEcCCCccc-cCChhhhhcccCceE
Q psy8029         181 LDHNQ-LIN-LTRAIFNNV------PNLRSLDISGNNISILPS-GVFSDLRKLQTFYANSNRFQ-MFPKDLFAEMKYLQV  250 (693)
Q Consensus       181 L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~  250 (693)
                      +++|+ +++ ..+..++.+      ++|++|++++|.++.++. ..+..+++|++|++++|.++ .++  .|..+++|++
T Consensus       280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~  357 (636)
T 4eco_A          280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLAS  357 (636)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESE
T ss_pred             CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCE
Confidence            99998 887 455555555      999999999999997765 26889999999999999999 777  6889999999


Q ss_pred             EEEecCCCcccccCccccCCCCC-ccEEEcCCCCCcccCcccccCC--CCccEEEecCCCCCCcCChhhhc-------CC
Q psy8029         251 IKISYHKDSLKELPSGLFANLPL-LNTVILGESSIAELPSDLFWNS--TNITNIVLTGHKKLTSLPSTLFR-------DC  320 (693)
Q Consensus       251 L~l~~n~~~~~~i~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~--~~L~~L~l~~n~~l~~l~~~~~~-------~~  320 (693)
                      |++++|.  +..+|.. +..+++ |++|++++|.++.+|.. +...  ++|+.|++++| .+....+..|.       .+
T Consensus       358 L~L~~N~--l~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~-~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~~  432 (636)
T 4eco_A          358 LNLAYNQ--ITEIPAN-FCGFTEQVENLSFAHNKLKYIPNI-FDAKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFKG  432 (636)
T ss_dssp             EECCSSE--EEECCTT-SEEECTTCCEEECCSSCCSSCCSC-CCTTCSSCEEEEECCSS-CTTTTTTCSSCTTCSSCCCC
T ss_pred             EECCCCc--cccccHh-hhhhcccCcEEEccCCcCcccchh-hhhcccCccCEEECcCC-cCCCcchhhhcccccccccC
Confidence            9999998  5588876 788888 99999999999988853 4444  38999999999 76654444455       67


Q ss_pred             CCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc--cC-------CCCCCeEeCCCCcccccccccc-CCC
Q psy8029         321 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL--VG-------LSGLNSLDLSWNQLEQINLIAF-DGL  390 (693)
Q Consensus       321 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~-------l~~L~~L~Ls~n~l~~~~~~~~-~~l  390 (693)
                      ++|++|++++|.++.+|...|..+++|+.|++++|+++.+|..  ..       +++|++|++++|.++.++...+ ..+
T Consensus       433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l  512 (636)
T 4eco_A          433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL  512 (636)
T ss_dssp             CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTC
T ss_pred             CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccC
Confidence            8999999999999999999888899999999999999988865  22       2399999999999997665443 389


Q ss_pred             CCCcEEECCCCcCcccccccCCCCccCCCCCcEEEC------CCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccc
Q psy8029         391 SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL------SYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDS  464 (693)
Q Consensus       391 ~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  464 (693)
                      ++|++|++++|.+++.     +..+..+++|++|+|      ++|++.+..|..+..+++|+.|+|++|+++.++...  
T Consensus       513 ~~L~~L~Ls~N~l~~i-----p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~--  585 (636)
T 4eco_A          513 PYLVGIDLSYNSFSKF-----PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--  585 (636)
T ss_dssp             TTCCEEECCSSCCSSC-----CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC--
T ss_pred             CCcCEEECCCCCCCCc-----ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhH--
Confidence            9999999999999964     667788999999999      567788888888999999999999999998887763  


Q ss_pred             cCCCccEEECCCCCCceeeccchhhh
Q psy8029         465 IVSNKLTLDLSFNQIAIVDLRTLEIK  490 (693)
Q Consensus       465 ~l~~L~~L~L~~N~l~~~~~~~~~~l  490 (693)
                       .++|+.|++++|++..++...+...
T Consensus       586 -~~~L~~L~Ls~N~l~~~~~~~~~~~  610 (636)
T 4eco_A          586 -TPNISVLDIKDNPNISIDLSYVCPY  610 (636)
T ss_dssp             -CTTCCEEECCSCTTCEEECTTTHHH
T ss_pred             -hCcCCEEECcCCCCccccHHhcchh
Confidence             2799999999999999987666543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.6e-42  Score=384.17  Aligned_cols=59  Identities=12%  Similarity=0.130  Sum_probs=49.3

Q ss_pred             eEEEEcCCCCcccCCCCCCCCccccCceEEEEEecCCccccCCCCCCcccccCcEEEccCCccc
Q psy8029         588 IMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNIS  651 (693)
Q Consensus       588 l~~l~ls~n~l~~ip~~~~~l~~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  651 (693)
                      ++.+++++|+++.+|..+..+     ..++.|+|++|+|+++++..+..+++|+.|++++|+++
T Consensus       423 L~~L~Ls~N~l~~ip~~~~~l-----~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          423 IKVLDLHSNKIKSIPKQVVKL-----EALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             CCEEECCSSCCCCCCGGGGGC-----TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCEEECCCCcccccchhhhcC-----CCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence            677888888888888766655     67888999999999887776888999999999999988

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.6e-41  Score=389.50  Aligned_cols=439  Identities=18%  Similarity=0.239  Sum_probs=346.8

Q ss_pred             CCccEEEEEcCCCCCccHHHHhhhcCcccccEEEe-ecCCCCccCCCCc-------------------------------
Q psy8029          48 GPFNAVTFTFCPLPDENFISLFSKLNITTINTLAF-SNSPSNVGVLSPP-------------------------------   95 (693)
Q Consensus        48 ~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l-~~~~~~i~~l~~~-------------------------------   95 (693)
                      ++|+.|+|+++.+...--..   ...++.|+.|+| +++  .+....+.                               
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~---l~~L~~L~~LdLss~N--~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~  397 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDA---IGQLTELKVLSFGTHS--ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR  397 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGG---GGGCTTCCEEESCCTT--HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGG
T ss_pred             CCEEEEECccCCCCCcCchH---HhccccceEeeecccc--cccccccccccccccccchhHHHHHHHhhhhhhhccCcc
Confidence            68999999999886432222   346788999999 555  44321100                               


Q ss_pred             --------------------cCCCcccccEEEccC--CcCcccccccccCCCCCCcEEEeeCCcccc-------------
Q psy8029          96 --------------------YFDGLHFVKHILLSH--NKEITGLHKDIFKGTPQLESLNLRGNSITE-------------  140 (693)
Q Consensus        96 --------------------~~~~l~~L~~L~Ls~--n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~-------------  140 (693)
                                          .......++.+.+..  | +++++|. .|.++++|++|+|++|.+++             
T Consensus       398 ~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N-~L~~IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n  475 (876)
T 4ecn_A          398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RITFISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD  475 (876)
T ss_dssp             GGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSC-EEEEECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSH
T ss_pred             hhhhHHHHHHhhhCccccccccccccchhhceeccccC-cccchhH-HHhcCCCCCEEECcCCcCCCCcccccccccccc
Confidence                                001122333333333  5 7777765 48899999999999999998             


Q ss_pred             -----cCccc-CCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCC-CCC-CChhh-------cCCCCCCcEEEC
Q psy8029         141 -----LYSGV-FQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ-LIN-LTRAI-------FNNVPNLRSLDI  205 (693)
Q Consensus       141 -----~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~-------~~~l~~L~~L~L  205 (693)
                           +|... |.++++|++|+|++|.+.+..|..|.++++|++|++++|+ +++ ..+..       +..+++|++|++
T Consensus       476 ~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~L  555 (876)
T 4ecn_A          476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM  555 (876)
T ss_dssp             HHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEEC
T ss_pred             cccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEe
Confidence                 77663 3399999999999999888778889999999999999998 886 33433       345569999999


Q ss_pred             cCCCCCcCCC-CcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCC-ccEEEcCCCC
Q psy8029         206 SGNNISILPS-GVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPL-LNTVILGESS  283 (693)
Q Consensus       206 ~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~-L~~L~l~~n~  283 (693)
                      ++|.++.++. ..+.++++|+.|++++|.++.++  .|..+++|+.|++++|.  +..+|.. +..+++ |+.|++++|.
T Consensus       556 s~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~--l~~lp~~-l~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          556 GYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQ--IEEIPED-FCAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             CSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSC--CSCCCTT-SCEECTTCCEEECCSSC
T ss_pred             eCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCc--cccchHH-HhhccccCCEEECcCCC
Confidence            9999997775 36889999999999999999888  58899999999999999  4478876 778888 9999999999


Q ss_pred             CcccCcccccCCC--CccEEEecCCCCCCcCChhh---hc--CCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCc
Q psy8029         284 IAELPSDLFWNST--NITNIVLTGHKKLTSLPSTL---FR--DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ  356 (693)
Q Consensus       284 l~~~~~~~~~~~~--~L~~L~l~~n~~l~~l~~~~---~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~  356 (693)
                      +..+|. .+....  +|+.|++++| .+....+.+   +.  .+++|++|++++|.++.+|...|..+++|+.|+|++|+
T Consensus       631 L~~lp~-~~~~~~~~~L~~L~Ls~N-~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~  708 (876)
T 4ecn_A          631 LKYIPN-IFNAKSVYVMGSVDFSYN-KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL  708 (876)
T ss_dssp             CCSCCS-CCCTTCSSCEEEEECCSS-CTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred             CCcCch-hhhccccCCCCEEECcCC-cCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence            998874 445544  4999999999 664432221   11  34589999999999999999988899999999999999


Q ss_pred             CccccCc--c-------CCCCCCeEeCCCCccccccccccC--CCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEE
Q psy8029         357 LENITSL--V-------GLSGLNSLDLSWNQLEQINLIAFD--GLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETIN  425 (693)
Q Consensus       357 l~~l~~~--~-------~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~  425 (693)
                      ++.+|..  .       .+++|++|+|++|.++.++. .+.  .+++|+.|+|++|.+++.     +..+..+++|+.|+
T Consensus       709 L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~-~l~~~~l~~L~~L~Ls~N~L~~l-----p~~l~~L~~L~~L~  782 (876)
T 4ecn_A          709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD-DFRATTLPYLSNMDVSYNCFSSF-----PTQPLNSSQLKAFG  782 (876)
T ss_dssp             CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCG-GGSTTTCTTCCEEECCSSCCSSC-----CCGGGGCTTCCEEE
T ss_pred             CCccChHHhccccccccccCCccEEECCCCCCccchH-HhhhccCCCcCEEEeCCCCCCcc-----chhhhcCCCCCEEE
Confidence            9988875  2       23389999999999997655 454  899999999999999964     66778999999999


Q ss_pred             CCC------CCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCc
Q psy8029         426 LSY------NRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNED  499 (693)
Q Consensus       426 Ls~------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~  499 (693)
                      |++      |.+.+..|..+..+++|+.|+|++|+|..+|...   .++|+.|||++|++..+++..+.....       
T Consensus       783 Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l---~~~L~~LdLs~N~l~~i~~~~~~~~~~-------  852 (876)
T 4ecn_A          783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL---TPQLYILDIADNPNISIDVTSVCPYIE-------  852 (876)
T ss_dssp             CCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC---CSSSCEEECCSCTTCEEECGGGHHHHH-------
T ss_pred             CCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhh---cCCCCEEECCCCCCCccChHHcccccc-------
Confidence            976      7888888988999999999999999998887763   368999999999999999888766543       


Q ss_pred             cccccccCcEEEcCCCcccc--cCCc
Q psy8029         500 STMVARSANIVILNDNPIAC--NCSN  523 (693)
Q Consensus       500 ~~~~~~~l~~l~l~~Np~~c--~C~~  523 (693)
                             ...+.+.+|++.+  +|+.
T Consensus       853 -------~~~~~L~~n~~~~I~gC~~  871 (876)
T 4ecn_A          853 -------AGMYVLLYDKTQDIRGCDA  871 (876)
T ss_dssp             -------TTCCEEECCTTSEEESCGG
T ss_pred             -------chheeecCCCccccCCCCC
Confidence                   3356677777764  7754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=9.6e-41  Score=363.50  Aligned_cols=398  Identities=20%  Similarity=0.248  Sum_probs=291.4

Q ss_pred             cEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCccc-ccCcccCCCCCCCcEEE
Q psy8029          78 NTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSIT-ELYSGVFQYVPKLQVLD  156 (693)
Q Consensus        78 ~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~  156 (693)
                      +.++.+++  .++.++.  +  .++|++|++++| .++++++..|.++++|++|++++|.+. .+++..|.++++|++|+
T Consensus        13 ~~~~c~~~--~l~~lp~--l--~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~   85 (455)
T 3v47_A           13 YNAICINR--GLHQVPE--L--PAHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK   85 (455)
T ss_dssp             TEEECCSS--CCSSCCC--C--CTTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred             cccCcCCC--CcccCCC--C--CCccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence            35666666  7777774  2  278888999988 888887778888888999999888886 57777788888889999


Q ss_pred             cCCCCCCccChhhhCCCCCCCEEEccCCCCCCCCh--hhcCCCCCCcEEECcCCCCCcCCCCc-CCCCCCCcEEEcCCCc
Q psy8029         157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTR--AIFNNVPNLRSLDISGNNISILPSGV-FSDLRKLQTFYANSNR  233 (693)
Q Consensus       157 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~l~~n~  233 (693)
                      +++|.++++.+..|.++++|++|++++|++++..+  ..|..+++|++|++++|.++.+.+.. +.++++|++|++++|.
T Consensus        86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  165 (455)
T 3v47_A           86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK  165 (455)
T ss_dssp             CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred             CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence            98888888888888888888888888888876333  33788888888888888888876554 7778888888888888


Q ss_pred             cccCChhhhhcc--cCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCc
Q psy8029         234 FQMFPKDLFAEM--KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTS  311 (693)
Q Consensus       234 l~~~~~~~~~~~--~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~  311 (693)
                      ++.+.+..+..+  .+|+.+++++|.  +..++...+..                .....+..+++|+.|++++| .++.
T Consensus       166 l~~~~~~~l~~l~~~~L~~L~l~~n~--l~~~~~~~~~~----------------~~~~~~~~~~~L~~L~Ls~n-~l~~  226 (455)
T 3v47_A          166 VKSICEEDLLNFQGKHFTLLRLSSIT--LQDMNEYWLGW----------------EKCGNPFKNTSITTLDLSGN-GFKE  226 (455)
T ss_dssp             BSCCCTTTSGGGTTCEEEEEECTTCB--CTTCSTTCTTH----------------HHHCCTTTTCEEEEEECTTS-CCCH
T ss_pred             ccccChhhhhccccccccccccccCc--ccccchhhccc----------------cccccccccceeeeEecCCC-cccc
Confidence            877666555444  456666666555  22333221110                00000112344555555554 3322


Q ss_pred             CChhhhc---CCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc----cCCCCCCeEeCCCCccccccc
Q psy8029         312 LPSTLFR---DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL----VGLSGLNSLDLSWNQLEQINL  384 (693)
Q Consensus       312 l~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~----~~l~~L~~L~Ls~n~l~~~~~  384 (693)
                      ..+..|.   ..++|+.|++++|.+.....              ..+.+......    ...++|++|++++|.+.++.+
T Consensus       227 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  292 (455)
T 3v47_A          227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK  292 (455)
T ss_dssp             HHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred             cchhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccch
Confidence            2111111   12556666666554432111              01111111110    234689999999999999999


Q ss_pred             cccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccc
Q psy8029         385 IAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDS  464 (693)
Q Consensus       385 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  464 (693)
                      ..|..+++|++|++++|.++..    .+..+..+++|++|++++|.++++.+..+..+++|++|++++|+++++++..+.
T Consensus       293 ~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  368 (455)
T 3v47_A          293 SVFSHFTDLEQLTLAQNEINKI----DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL  368 (455)
T ss_dssp             TTTTTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             hhcccCCCCCEEECCCCccccc----ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc
Confidence            8999999999999999999876    466788999999999999999999999999999999999999999999888899


Q ss_pred             cCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCC-cHHHHHHHhcc
Q psy8029         465 IVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCS-NYDLIRFVSKK  533 (693)
Q Consensus       465 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~-~~~~~~~~~~~  533 (693)
                      .+++|+.|++++|+++.++...+..+              ++++.+++++|||.|+|+ ..|+.+|+...
T Consensus       369 ~l~~L~~L~L~~N~l~~~~~~~~~~l--------------~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~  424 (455)
T 3v47_A          369 GLPNLKELALDTNQLKSVPDGIFDRL--------------TSLQKIWLHTNPWDCSCPRIDYLSRWLNKN  424 (455)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTC--------------TTCCEEECCSSCBCCCTTTTHHHHHHHHHT
T ss_pred             ccccccEEECCCCccccCCHhHhccC--------------CcccEEEccCCCcccCCCcchHHHHHHHhC
Confidence            99999999999999999887766554              458899999999999998 67888998765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.1e-41  Score=385.25  Aligned_cols=378  Identities=18%  Similarity=0.255  Sum_probs=317.5

Q ss_pred             CccCCCCccCCCcccccEEEccCCcCccc------------------ccccc-cCCCCCCcEEEeeCCcccccCcccCCC
Q psy8029          88 NVGVLSPPYFDGLHFVKHILLSHNKEITG------------------LHKDI-FKGTPQLESLNLRGNSITELYSGVFQY  148 (693)
Q Consensus        88 ~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~------------------~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~  148 (693)
                      .++.|+ ..|+++++|++|+|++| .+++                  +|... |.++++|++|+|++|.+.+..+..|.+
T Consensus       436 ~L~~IP-~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          436 RITFIS-KAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD  513 (876)
T ss_dssp             EEEEEC-GGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred             cccchh-HHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence            566676 67999999999999999 9998                  66653 339999999999999987755566899


Q ss_pred             CCCCcEEEcCCCC-CCc-cChhhhC-------CCCCCCEEEccCCCCCCCCh-hhcCCCCCCcEEECcCCCCCcCCCCcC
Q psy8029         149 VPKLQVLDLGSND-VAY-MDPEIFK-------NLTSLRILNLDHNQLINLTR-AIFNNVPNLRSLDISGNNISILPSGVF  218 (693)
Q Consensus       149 l~~L~~L~Ls~n~-l~~-~~~~~~~-------~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~  218 (693)
                      +++|++|++++|. +++ ..|..+.       .+++|++|++++|+++.++. ..|+++++|++|++++|.++.++  .|
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~  591 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AF  591 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CC
T ss_pred             CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hh
Confidence            9999999999998 886 4444344       45599999999999997765 36899999999999999999777  68


Q ss_pred             CCCCCCcEEEcCCCccccCChhhhhcccC-ceEEEEecCCCcccccCccccCCCC--CccEEEcCCCCCcccCcccc---
Q psy8029         219 SDLRKLQTFYANSNRFQMFPKDLFAEMKY-LQVIKISYHKDSLKELPSGLFANLP--LLNTVILGESSIAELPSDLF---  292 (693)
Q Consensus       219 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~~~~~~i~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~---  292 (693)
                      ..+++|+.|++++|.++.++.. +..+++ |++|++++|.  +..+|.. +...+  +|+.|++++|.+.+..+.+.   
T Consensus       592 ~~L~~L~~L~Ls~N~l~~lp~~-l~~l~~~L~~L~Ls~N~--L~~lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l  667 (876)
T 4ecn_A          592 GTNVKLTDLKLDYNQIEEIPED-FCAFTDQVEGLGFSHNK--LKYIPNI-FNAKSVYVMGSVDFSYNKIGSEGRNISCSM  667 (876)
T ss_dssp             CTTSEESEEECCSSCCSCCCTT-SCEECTTCCEEECCSSC--CCSCCSC-CCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred             cCCCcceEEECcCCccccchHH-HhhccccCCEEECcCCC--CCcCchh-hhccccCCCCEEECcCCcCCCccccchhhh
Confidence            9999999999999999988766 778888 9999999999  5578754 55554  49999999999977543322   


Q ss_pred             --cCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccC-------ccCceEeccCCcCccccCc
Q psy8029         293 --WNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESL-------KELYTLNLKNNQLENITSL  363 (693)
Q Consensus       293 --~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-------~~L~~L~Ls~n~l~~l~~~  363 (693)
                        ....+|+.|++++| .+..+|..+|..+++|++|++++|.++.+|...|...       ++|+.|+|++|+++.+|..
T Consensus       668 ~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~  746 (876)
T 4ecn_A          668 DDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD  746 (876)
T ss_dssp             TTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGG
T ss_pred             ccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHH
Confidence              13458999999999 8999999998899999999999999999998776543       3999999999999998876


Q ss_pred             -c--CCCCCCeEeCCCCccccccccccCCCCCCcEEECCC------CcCcccccccCCCCccCCCCCcEEECCCCCCCcC
Q psy8029         364 -V--GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSH------NLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL  434 (693)
Q Consensus       364 -~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  434 (693)
                       .  .+++|+.|+|++|.++++ +..+..+++|+.|+|++      |.+.+.    .+..+..+++|+.|+|++|.+..+
T Consensus       747 l~~~~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~----ip~~l~~L~~L~~L~Ls~N~L~~I  821 (876)
T 4ecn_A          747 FRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQ----WPTGITTCPSLIQLQIGSNDIRKV  821 (876)
T ss_dssp             GSTTTCTTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCC----CCTTGGGCSSCCEEECCSSCCCBC
T ss_pred             hhhccCCCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCccccccccc----ChHHHhcCCCCCEEECCCCCCCcc
Confidence             4  899999999999999996 55788999999999987      556544    477889999999999999999766


Q ss_pred             ChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCcee
Q psy8029         435 FDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIV  482 (693)
Q Consensus       435 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  482 (693)
                      +.. +.  ++|+.|+|++|++..+....+.....+..+.|.+|++..+
T Consensus       822 p~~-l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I  866 (876)
T 4ecn_A          822 DEK-LT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI  866 (876)
T ss_dssp             CSC-CC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEE
T ss_pred             CHh-hc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcccc
Confidence            554 33  7999999999999988877666555566777888877765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.8e-40  Score=374.88  Aligned_cols=412  Identities=20%  Similarity=0.263  Sum_probs=336.2

Q ss_pred             ccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCccccc---------------------------------ccc
Q psy8029          75 TTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLH---------------------------------KDI  121 (693)
Q Consensus        75 ~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~---------------------------------~~~  121 (693)
                      ..|+.|+++++  .++...+..++++++|++|+|++| .+...+                                 +..
T Consensus        81 ~~V~~L~L~~~--~l~g~lp~~l~~L~~L~~L~Ls~N-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGF--GASGRVPDAIGQLTELEVLALGSH-GEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTS--CCEEEECGGGGGCTTCCEEESCCG-GGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCc--ccCCcCChHHhcCccceEEECcCC-ccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhh
Confidence            46899999998  888544479999999999999999 552111                                 000


Q ss_pred             cC-------------------CCCCCcEEEe--eCCcccccCcccCCCCCCCcEEEcCCCCCCcc---------------
Q psy8029         122 FK-------------------GTPQLESLNL--RGNSITELYSGVFQYVPKLQVLDLGSNDVAYM---------------  165 (693)
Q Consensus       122 ~~-------------------~l~~L~~L~L--~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------------  165 (693)
                      +.                   ....++.+.+  .+|+++++|.. |+++++|++|+|++|.+++.               
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~  236 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ  236 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred             HHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHH-HhcccCCCEEECcCCccccccccccccccccchhc
Confidence            00                   0111222222  25788887764 89999999999999999983               


Q ss_pred             --ChhhhC--CCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCC-CCc-CCCCcCCCC------CCCcEEEcCCCc
Q psy8029         166 --DPEIFK--NLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNN-ISI-LPSGVFSDL------RKLQTFYANSNR  233 (693)
Q Consensus       166 --~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~l~~n~  233 (693)
                        .|..+.  ++++|++|++++|++.+..+..|+++++|++|++++|+ +++ ..+..+..+      ++|++|++++|.
T Consensus       237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~  316 (636)
T 4eco_A          237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN  316 (636)
T ss_dssp             HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred             ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence              455677  99999999999999998888889999999999999998 886 333334444      999999999999


Q ss_pred             cccCCh-hhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCC-ccEEEecCCCCCCc
Q psy8029         234 FQMFPK-DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN-ITNIVLTGHKKLTS  311 (693)
Q Consensus       234 l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~~l~~  311 (693)
                      ++.++. ..+..+++|++|++++|.+.+ .+|  .|..+++|++|++++|.+..+|.. +..+++ |+.|++++| .++.
T Consensus       317 l~~ip~~~~l~~l~~L~~L~L~~N~l~g-~ip--~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N-~l~~  391 (636)
T 4eco_A          317 LKTFPVETSLQKMKKLGMLECLYNQLEG-KLP--AFGSEIKLASLNLAYNQITEIPAN-FCGFTEQVENLSFAHN-KLKY  391 (636)
T ss_dssp             CSSCCCHHHHTTCTTCCEEECCSCCCEE-ECC--CCEEEEEESEEECCSSEEEECCTT-SEEECTTCCEEECCSS-CCSS
T ss_pred             CCccCchhhhccCCCCCEEeCcCCcCcc-chh--hhCCCCCCCEEECCCCccccccHh-hhhhcccCcEEEccCC-cCcc
Confidence            998886 368999999999999999432 777  588999999999999999988865 677888 999999999 8888


Q ss_pred             CChhhhcCC--CCCcEEEccCCCCCCCChhhhc-------cCccCceEeccCCcCccccCc--cCCCCCCeEeCCCCccc
Q psy8029         312 LPSTLFRDC--KKLVKLELQRNKLKYLPENLFE-------SLKELYTLNLKNNQLENITSL--VGLSGLNSLDLSWNQLE  380 (693)
Q Consensus       312 l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~-------~~~~L~~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~n~l~  380 (693)
                      +|.. |...  ++|++|++++|.++...+..|.       .+++|+.|++++|+++.+|..  ..+++|++|++++|.++
T Consensus       392 lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          392 IPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             CCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             cchh-hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence            8875 3444  4899999999999876555556       678999999999999998876  67899999999999999


Q ss_pred             cccccccCCCC-------CCcEEECCCCcCcccccccCCCCcc--CCCCCcEEECCCCCCCcCChhHHhcCCCCcEEEC-
Q psy8029         381 QINLIAFDGLS-------SLNTVDLSHNLLTFDEYQYGYSPLK--QCVNLETINLSYNRISSLFDDWISSMTSLKELDL-  450 (693)
Q Consensus       381 ~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-  450 (693)
                      .++...+....       +|++|++++|.++..     +..+.  .+++|++|+|++|+++++ |..+..+++|+.|+| 
T Consensus       471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-----p~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls  544 (636)
T 4eco_A          471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-----SDDFRATTLPYLVGIDLSYNSFSKF-PTQPLNSSTLKGFGIR  544 (636)
T ss_dssp             BCCSSSSEETTEECTTGGGCCEEECCSSCCCBC-----CGGGSTTTCTTCCEEECCSSCCSSC-CCGGGGCSSCCEEECC
T ss_pred             CcCHHHhccccccccccCCccEEECcCCcCCcc-----ChhhhhccCCCcCEEECCCCCCCCc-ChhhhcCCCCCEEECC
Confidence            88777666543       999999999999954     55555  899999999999999995 556889999999999 


Q ss_pred             -----CCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccc
Q psy8029         451 -----RHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIAC  519 (693)
Q Consensus       451 -----~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c  519 (693)
                           ++|++.+..+..+..+++|+.|++++|+++.++....                 ++++.+++++||+.|
T Consensus       545 ~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~-----------------~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT-----------------PNISVLDIKDNPNIS  601 (636)
T ss_dssp             SCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC-----------------TTCCEEECCSCTTCE
T ss_pred             CCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh-----------------CcCCEEECcCCCCcc
Confidence                 5677887777788999999999999999987754422                 358899999999986

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.1e-39  Score=364.28  Aligned_cols=458  Identities=16%  Similarity=0.124  Sum_probs=240.6

Q ss_pred             ccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEE
Q psy8029          77 INTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD  156 (693)
Q Consensus        77 L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  156 (693)
                      .+.++++++  .++.++....   ++|++|++++| .++++++..|.++++|++|++++|.++++++.+|.++++|++|+
T Consensus        33 ~~~l~ls~~--~L~~ip~~~~---~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           33 ESMVDYSNR--NLTHVPKDLP---PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             CCEEECTTS--CCCSCCTTSC---TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             CcEEEcCCC--CCccCCCCCC---CCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            356666666  6666663222   56666666666 66666666666666666666666666666555666666666666


Q ss_pred             cCCCCCCccChhhhCCCCCCCEEEccCCCCCCCC-hhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCC--cEEEcCCCc
Q psy8029         157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLT-RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKL--QTFYANSNR  233 (693)
Q Consensus       157 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~l~~n~  233 (693)
                      +++|.++.++..   .+++|++|++++|++++++ +..|+++++|++|++++|.++...   +..+++|  +.|++++|.
T Consensus       107 Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          107 VSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             CTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESS
T ss_pred             CCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeeccc
Confidence            666666665543   5666666666666666544 245666666666666666665432   3333344  666666665


Q ss_pred             c--ccCChhhhhccc-CceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCC
Q psy8029         234 F--QMFPKDLFAEMK-YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT  310 (693)
Q Consensus       234 l--~~~~~~~~~~~~-~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~  310 (693)
                      +  +...+..|..+. ..-.++++.|.+.. .++...+..+++|+.+++++|....-                    .+.
T Consensus       181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~--------------------~l~  239 (562)
T 3a79_B          181 YHIKGGETESLQIPNTTVLHLVFHPNSLFS-VQVNMSVNALGHLQLSNIKLNDENCQ--------------------RLM  239 (562)
T ss_dssp             CCCCSSSCCEEEECCEEEEEEEECSSSCCC-CCCEEEESSEEEEEEEEEECCSTTHH--------------------HHH
T ss_pred             ccccccCcccccccCcceEEEEecCccchh-hhhhhcccccceEEEecccccccccc--------------------hHH
Confidence            5  444333333322 01123444444222 33333344445555555554431000                    000


Q ss_pred             cCChhhhcCCCCCcEEEccCCCCCC-----CChhhhccCccCceEeccCCcCc-cccCc------cCCCCCCeEeCCCCc
Q psy8029         311 SLPSTLFRDCKKLVKLELQRNKLKY-----LPENLFESLKELYTLNLKNNQLE-NITSL------VGLSGLNSLDLSWNQ  378 (693)
Q Consensus       311 ~l~~~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~Ls~n~l~-~l~~~------~~l~~L~~L~Ls~n~  378 (693)
                      ... ..|..+++|+.+++.++.+..     ++..  ...++|++|++++|.++ .+|..      ..++.|+.++++.+.
T Consensus       240 ~~~-~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~  316 (562)
T 3a79_B          240 TFL-SELTRGPTLLNVTLQHIETTWKCSVKLFQF--FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV  316 (562)
T ss_dssp             HHH-HHHHSCSSCEEEEEEEEEECHHHHHHHHHH--HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECC
T ss_pred             HHH-HHHhccCcceEEEecCCcCcHHHHHHHHHh--hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccce
Confidence            000 112344444444444443321     1111  11224555555555444 23322      122222223333333


Q ss_pred             cccccccccCC---CCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCC
Q psy8029         379 LEQINLIAFDG---LSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF  455 (693)
Q Consensus       379 l~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  455 (693)
                      + .++...+..   ..+|++|++++|.+...      .....+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus       317 ~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  389 (562)
T 3a79_B          317 F-LFSKEALYSVFAEMNIKMLSISDTPFIHM------VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL  389 (562)
T ss_dssp             C-SSCHHHHHHHHHTCCCSEEEEESSCCCCC------CCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCC
T ss_pred             e-ecChhhhhhhhccCcceEEEccCCCcccc------cCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCc
Confidence            2 111111111   13455555555555421      1114455555555555555555555555555556666665555


Q ss_pred             ccCCC--cccccCCCccEEECCCCCCce-eeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhc
Q psy8029         456 SFIPD--QLDSIVSNKLTLDLSFNQIAI-VDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSK  532 (693)
Q Consensus       456 ~~~~~--~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~  532 (693)
                      ++++.  ..+..+++|+.|++++|++++ ++...+..+              .+++.+++++|.+.-             
T Consensus       390 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l--------------~~L~~L~l~~n~l~~-------------  442 (562)
T 3a79_B          390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA--------------ESILVLNLSSNMLTG-------------  442 (562)
T ss_dssp             CBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC--------------TTCCEEECCSSCCCG-------------
T ss_pred             CCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc--------------ccCCEEECCCCCCCc-------------
Confidence            55442  234455555566666665554 333323222              235566666655320             


Q ss_pred             ccccceeeeeeeccCceeecCCCCccccccCCCCCcccCCCCCCCcEeeecCCCceEEEEcCCCCcccCCCCCCCCcccc
Q psy8029         533 KMTKTVYQMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDK  612 (693)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~l~c~~~~cp~~~~~~~~~~~~l~~l~ls~n~l~~ip~~~~~l~~~~  612 (693)
                      ..                        ...+            |          ..++.+++++|+++.+|+.+..+    
T Consensus       443 ~~------------------------~~~l------------~----------~~L~~L~L~~N~l~~ip~~~~~l----  472 (562)
T 3a79_B          443 SV------------------------FRCL------------P----------PKVKVLDLHNNRIMSIPKDVTHL----  472 (562)
T ss_dssp             GG------------------------GSSC------------C----------TTCSEEECCSSCCCCCCTTTTSS----
T ss_pred             ch------------------------hhhh------------c----------CcCCEEECCCCcCcccChhhcCC----
Confidence            00                        0000            0          23678889999999998877766    


Q ss_pred             CceEEEEEecCCccccCCCCCCcccccCcEEEccCCccc-cccC
Q psy8029         613 KATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNIS-HVDT  655 (693)
Q Consensus       613 ~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~  655 (693)
                       ..++.|+|++|+|+++++..++.+++|+.|++++|+++ ..+.
T Consensus       473 -~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          473 -QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             -CCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             -CCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence             77889999999999888777899999999999999998 5543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.3e-38  Score=343.48  Aligned_cols=386  Identities=21%  Similarity=0.248  Sum_probs=272.6

Q ss_pred             cEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcc-cccccccCCCCCCc
Q psy8029          51 NAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEIT-GLHKDIFKGTPQLE  129 (693)
Q Consensus        51 ~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~-~~~~~~~~~l~~L~  129 (693)
                      +.++.+++.+....     .  -.+++++|+++++  .++.+.+..|+++++|++|++++| .+. .+++..|.++++|+
T Consensus        13 ~~~~c~~~~l~~lp-----~--l~~~l~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~L~~n-~~~~~i~~~~~~~l~~L~   82 (455)
T 3v47_A           13 YNAICINRGLHQVP-----E--LPAHVNYVDLSLN--SIAELNETSFSRLQDLQFLKVEQQ-TPGLVIRNNTFRGLSSLI   82 (455)
T ss_dssp             TEEECCSSCCSSCC-----C--CCTTCCEEECCSS--CCCEECTTTTSSCTTCCEEECCCC-STTCEECTTTTTTCTTCC
T ss_pred             cccCcCCCCcccCC-----C--CCCccCEEEecCC--ccCcCChhHhccCccccEEECcCC-cccceECcccccccccCC
Confidence            45565565554322     2  1267999999999  999998899999999999999999 776 68888899999999


Q ss_pred             EEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChh--hhCCCCCCCEEEccCCCCCCCChhh-cCCCCCCcEEECc
Q psy8029         130 SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPE--IFKNLTSLRILNLDHNQLINLTRAI-FNNVPNLRSLDIS  206 (693)
Q Consensus       130 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~  206 (693)
                      +|++++|.++++.+..|+++++|++|++++|.+++..+.  .|..+++|++|++++|+++++.+.. |.++++|++|+++
T Consensus        83 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  162 (455)
T 3v47_A           83 ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT  162 (455)
T ss_dssp             EEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred             EEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence            999999999998888899999999999999999874443  4899999999999999999986654 8899999999999


Q ss_pred             CCCCCcCCCCcCCCC--CCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCC
Q psy8029         207 GNNISILPSGVFSDL--RKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI  284 (693)
Q Consensus       207 ~n~i~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l  284 (693)
                      +|.++++.+..+..+  .+|+.|++++|.+..++...+..                 ... ..+..+++|++|++++|.+
T Consensus       163 ~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~-----------------~~~-~~~~~~~~L~~L~Ls~n~l  224 (455)
T 3v47_A          163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW-----------------EKC-GNPFKNTSITTLDLSGNGF  224 (455)
T ss_dssp             TCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH-----------------HHH-CCTTTTCEEEEEECTTSCC
T ss_pred             CCcccccChhhhhccccccccccccccCcccccchhhccc-----------------ccc-ccccccceeeeEecCCCcc
Confidence            999999888777766  78999999999998776543220                 000 0022334445555555544


Q ss_pred             cccCcccccC---CCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhc--cCccCceEeccCCcCcc
Q psy8029         285 AELPSDLFWN---STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFE--SLKELYTLNLKNNQLEN  359 (693)
Q Consensus       285 ~~~~~~~~~~---~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~Ls~n~l~~  359 (693)
                      .+..+..+..   .++++.+++++| ......              +..+.+.......|.  ..++|+.|++++|++++
T Consensus       225 ~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  289 (455)
T 3v47_A          225 KESMAKRFFDAIAGTKIQSLILSNS-YNMGSS--------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA  289 (455)
T ss_dssp             CHHHHHHHHHHTTTCCEEEEECTTC-TTTSCC--------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred             cccchhhhhccccccceeeEeeccc-cccccc--------------cchhhhccCcccccccccccCceEEEecCccccc
Confidence            4322222221   245555555555 211110              001111111111111  12456666666666665


Q ss_pred             ccCc--cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChh
Q psy8029         360 ITSL--VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDD  437 (693)
Q Consensus       360 l~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  437 (693)
                      +...  ..+++|++|++++|.++++.+..|.++++|++|++++|.++..    .+..+..+++|++|++++|+++++.+.
T Consensus       290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~  365 (455)
T 3v47_A          290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI----DSRMFENLDKLEVLDLSYNHIRALGDQ  365 (455)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE----CGGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred             cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc----ChhHhcCcccCCEEECCCCcccccChh
Confidence            3322  5566677777777777777666777777777777777777654    245566777777888888877777777


Q ss_pred             HHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceee
Q psy8029         438 WISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVD  483 (693)
Q Consensus       438 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  483 (693)
                      .|..+++|++|++++|+|+++++..+..+++|+.|++++|++++..
T Consensus       366 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             hccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence            7777888888888888888777777777778888888888887643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.9e-38  Score=347.41  Aligned_cols=355  Identities=22%  Similarity=0.333  Sum_probs=241.1

Q ss_pred             cEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCC
Q psy8029         153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN  232 (693)
Q Consensus       153 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n  232 (693)
                      +.++.++++++.++...   .+++++|++++|+++++.+..|.++++|++|+|++|.++.+.+..|.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCcCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            56788888888777542   357888888888888888777888888888888888888887777888888888888888


Q ss_pred             ccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcC
Q psy8029         233 RFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSL  312 (693)
Q Consensus       233 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l  312 (693)
                      .++.++...|.++++|++|++++|.  +..+++..|..+++|++|++++|.+..+++..|.++++|+.|++++| .++.+
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~  167 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENK--IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSI  167 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSC
T ss_pred             cCCccCcccccCCCCCCEEECCCCc--cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCccc
Confidence            8888887777777888888887777  44555556777777777777777777766666667777777777777 66666


Q ss_pred             ChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCcc-ccCc-cCCCCCCeEeCCCCccccccccccCCC
Q psy8029         313 PSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN-ITSL-VGLSGLNSLDLSWNQLEQINLIAFDGL  390 (693)
Q Consensus       313 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l  390 (693)
                      +...|..+++|++|++++|.+..++...|..+++|+.|++++|.... ++.. ....+|++|++++|.+++++...|.. 
T Consensus       168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-  246 (477)
T 2id5_A          168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH-  246 (477)
T ss_dssp             CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT-
T ss_pred             ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC-
Confidence            66666677777777777777666666566666666666666655433 3322 22334555555555555444444444 


Q ss_pred             CCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCcc
Q psy8029         391 SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKL  470 (693)
Q Consensus       391 ~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  470 (693)
                                                 +++|++|+|++|.++++.+..|..+++|+.|+|++|+++++.+..+..+++|+
T Consensus       247 ---------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  299 (477)
T 2id5_A          247 ---------------------------LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR  299 (477)
T ss_dssp             ---------------------------CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCC
T ss_pred             ---------------------------ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCC
Confidence                                       44555555555555555554455555555555555555555555555556666


Q ss_pred             EEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCcee
Q psy8029         471 TLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLE  550 (693)
Q Consensus       471 ~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (693)
                      .|++++|+++.++...+..+              ++++.+++++|||.|+|.+.|+.+|....         ....+...
T Consensus       300 ~L~L~~N~l~~~~~~~~~~l--------------~~L~~L~l~~N~l~c~c~~~~~~~~~~~~---------~~~~~~~~  356 (477)
T 2id5_A          300 VLNVSGNQLTTLEESVFHSV--------------GNLETLILDSNPLACDCRLLWVFRRRWRL---------NFNRQQPT  356 (477)
T ss_dssp             EEECCSSCCSCCCGGGBSCG--------------GGCCEEECCSSCEECSGGGHHHHTTTTSS---------CCTTCCCB
T ss_pred             EEECCCCcCceeCHhHcCCC--------------cccCEEEccCCCccCccchHhHHhhhhcc---------ccCccCce
Confidence            66666666665555444433              34789999999999999999998764321         23445678


Q ss_pred             ecCC---CCccccccCC
Q psy8029         551 CFGN---AGVGINSVRP  564 (693)
Q Consensus       551 c~~~---~~~~~~~l~~  564 (693)
                      |..|   +|..+.+++.
T Consensus       357 C~~p~~~~g~~l~~~~~  373 (477)
T 2id5_A          357 CATPEFVQGKEFKDFPD  373 (477)
T ss_dssp             EEESGGGTTCBGGGSCS
T ss_pred             eCCchHHcCCchhhCcc
Confidence            9888   6777776653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.2e-38  Score=340.96  Aligned_cols=343  Identities=24%  Similarity=0.243  Sum_probs=142.0

Q ss_pred             cccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCc
Q psy8029          74 ITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQ  153 (693)
Q Consensus        74 ~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  153 (693)
                      .++|++|+++++  .++.++ ..++++++|++|++++| .+.+..+..++++++|+.+++.+|..           .+++
T Consensus        10 ~~~L~~L~l~~n--~l~~iP-~~i~~L~~L~~L~l~~n-~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~   74 (454)
T 1jl5_A           10 NTFLQEPLRHSS--NLTEMP-VEAENVKSKTEYYNAWS-EWERNAPPGNGEQREMAVSRLRDCLD-----------RQAH   74 (454)
T ss_dssp             ---------------------------CCHHHHHHHHH-HHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCS
T ss_pred             cccchhhhcccC--chhhCC-hhHhcccchhhhhccCC-cccccCCcccccchhcchhhhhhhhc-----------cCCC
Confidence            455666666666  666665 45666777777777766 66654444455555542222221110           1234


Q ss_pred             EEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCc
Q psy8029         154 VLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR  233 (693)
Q Consensus       154 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~  233 (693)
                      +|++++|.+++++.    -.++|++|++++|++++++.    .+++|++|++++|.+++++..    .++|++|++++|.
T Consensus        75 ~L~l~~~~l~~lp~----~~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~  142 (454)
T 1jl5_A           75 ELELNNLGLSSLPE----LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQ  142 (454)
T ss_dssp             EEECTTSCCSCCCS----CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSC
T ss_pred             EEEecCCccccCCC----CcCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCC
Confidence            44444444444332    11344444444444444321    123444444444444433321    1344444444444


Q ss_pred             cccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCC
Q psy8029         234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP  313 (693)
Q Consensus       234 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~  313 (693)
                      ++.++  .|.++++|++|++++|+  +..+|..    .++|++|++++|.+++++  .+.++++|+.|++++| .++.+|
T Consensus       143 l~~lp--~~~~l~~L~~L~l~~N~--l~~lp~~----~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N-~l~~l~  211 (454)
T 1jl5_A          143 LEKLP--ELQNSSFLKIIDVDNNS--LKKLPDL----PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNN-SLKKLP  211 (454)
T ss_dssp             CSSCC--CCTTCTTCCEEECCSSC--CSCCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSS-CCSSCC
T ss_pred             CCCCc--ccCCCCCCCEEECCCCc--CcccCCC----cccccEEECcCCcCCcCc--cccCCCCCCEEECCCC-cCCcCC
Confidence            44433  13444444444444443  2223321    124444444444444443  1344444444444444 444433


Q ss_pred             hhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCC
Q psy8029         314 STLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSL  393 (693)
Q Consensus       314 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  393 (693)
                      ..    .++|++|++++|.++.+|.  |..+++|++|++++|++++++.  .+++|++|++++|.+++++..    .++|
T Consensus       212 ~~----~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N~l~~l~~~----~~~L  279 (454)
T 1jl5_A          212 DL----PLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNYLTDLPEL----PQSL  279 (454)
T ss_dssp             CC----CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSSCCSCCCCC----CTTC
T ss_pred             CC----cCcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCcccc--cccccCEEECCCCcccccCcc----cCcC
Confidence            21    1345555555555554442  4455555555555555554443  234555555555555543321    2455


Q ss_pred             cEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEE
Q psy8029         394 NTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLD  473 (693)
Q Consensus       394 ~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  473 (693)
                      ++|++++|.+++..    .    ..++|++|++++|.++++..    ..++|+.|++++|++++++..    +++|+.|+
T Consensus       280 ~~L~ls~N~l~~l~----~----~~~~L~~L~l~~N~l~~i~~----~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~  343 (454)
T 1jl5_A          280 TFLDVSENIFSGLS----E----LPPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIELPAL----PPRLERLI  343 (454)
T ss_dssp             CEEECCSSCCSEES----C----CCTTCCEEECCSSCCSEECC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEE
T ss_pred             CEEECcCCccCccc----C----cCCcCCEEECcCCcCCcccC----CcCcCCEEECCCCcccccccc----CCcCCEEE
Confidence            55555555555321    0    01355555555555554321    113555555555555554332    34555555


Q ss_pred             CCCCCCcee
Q psy8029         474 LSFNQIAIV  482 (693)
Q Consensus       474 L~~N~l~~~  482 (693)
                      +++|+++.+
T Consensus       344 L~~N~l~~l  352 (454)
T 1jl5_A          344 ASFNHLAEV  352 (454)
T ss_dssp             CCSSCCSCC
T ss_pred             CCCCccccc
Confidence            555555543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.9e-37  Score=334.04  Aligned_cols=345  Identities=23%  Similarity=0.369  Sum_probs=184.1

Q ss_pred             ccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcE
Q psy8029          75 TTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQV  154 (693)
Q Consensus        75 ~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  154 (693)
                      +.++.|++.++  .++.++  .+..+++|++|++++| .++++++  +.++++|++|++++|.++++++  |.++++|++
T Consensus        46 ~~l~~L~l~~~--~i~~l~--~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           46 DQVTTLQADRL--GIKSID--GVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HTCCEEECCSS--CCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             ccccEEecCCC--CCccCc--chhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            34555566555  555554  2555556666666665 5555554  5555666666666665555544  455566666


Q ss_pred             EEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcc
Q psy8029         155 LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF  234 (693)
Q Consensus       155 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  234 (693)
                      |++++|.++++++  +..+++|++|++++|.+++++.  +..+++|++|+++ |.+..+++  +..+++|+.|++++|.+
T Consensus       117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKV  189 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGG--GTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCChH--HcCCCCCCEEECCCCccCCChh--hccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCcC
Confidence            6666655555543  5555566666666555555432  4555555555554 33333322  45555555555555555


Q ss_pred             ccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCCh
Q psy8029         235 QMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS  314 (693)
Q Consensus       235 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~  314 (693)
                      +.++.  +..+++|++|++++|                          .+.++++  +..+++|+.|++++| .++.++.
T Consensus       190 ~~~~~--l~~l~~L~~L~l~~n--------------------------~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~  238 (466)
T 1o6v_A          190 SDISV--LAKLTNLESLIATNN--------------------------QISDITP--LGILTNLDELSLNGN-QLKDIGT  238 (466)
T ss_dssp             CCCGG--GGGCTTCSEEECCSS--------------------------CCCCCGG--GGGCTTCCEEECCSS-CCCCCGG
T ss_pred             CCChh--hccCCCCCEEEecCC--------------------------ccccccc--ccccCCCCEEECCCC-Ccccchh
Confidence            54432  344455555555554                          4444332  333444555555544 4444422


Q ss_pred             hhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCc
Q psy8029         315 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLN  394 (693)
Q Consensus       315 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  394 (693)
                        +..+++|++|++++|.++.+++  +..+++|+.|++++|++++++....+++|++|++++|.+.++.+  +..+++|+
T Consensus       239 --l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  312 (466)
T 1o6v_A          239 --LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLT  312 (466)
T ss_dssp             --GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred             --hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence              3445555555555555554443  44555555555555555555444555555555555555555443  44555566


Q ss_pred             EEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEEC
Q psy8029         395 TVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDL  474 (693)
Q Consensus       395 ~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  474 (693)
                      .|++++|.+++.      .++..+++|++|++++|.++++.  .+..+++|+.|++++|++++.++  +..+++|+.|++
T Consensus       313 ~L~L~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l  382 (466)
T 1o6v_A          313 YLTLYFNNISDI------SPVSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL  382 (466)
T ss_dssp             EEECCSSCCSCC------GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEEC
T ss_pred             EEECcCCcCCCc------hhhccCccCCEeECCCCccCCch--hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEec
Confidence            666666555532      22455556666666666655542  35556666666666666655544  455556666666


Q ss_pred             CCCCCcee
Q psy8029         475 SFNQIAIV  482 (693)
Q Consensus       475 ~~N~l~~~  482 (693)
                      ++|+++..
T Consensus       383 ~~n~~~~~  390 (466)
T 1o6v_A          383 NDQAWTNA  390 (466)
T ss_dssp             CCEEEECC
T ss_pred             cCCcccCC
Confidence            66666554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.7e-37  Score=334.13  Aligned_cols=343  Identities=26%  Similarity=0.383  Sum_probs=254.9

Q ss_pred             CCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECc
Q psy8029         127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDIS  206 (693)
Q Consensus       127 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  206 (693)
                      +++.|+++++.++.++.  +..+++|++|++++|.++++++  +.++++|++|++++|+++++.+  ++.+++|++|+++
T Consensus        47 ~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~  120 (466)
T 1o6v_A           47 QVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF  120 (466)
T ss_dssp             TCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             cccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence            34444444444444332  3344444444444444444433  4445555555555555544443  4555555555555


Q ss_pred             CCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcc
Q psy8029         207 GNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE  286 (693)
Q Consensus       207 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~  286 (693)
                      +|.++.+++  +..+++|++|++++|.+..++.  +..+++|++|+++++   ...+++  +..+++|++|++++|.+..
T Consensus       121 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~~---~~~~~~--~~~l~~L~~L~l~~n~l~~  191 (466)
T 1o6v_A          121 NNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQ---VTDLKP--LANLTTLERLDISSNKVSD  191 (466)
T ss_dssp             SSCCCCCGG--GTTCTTCSEEEEEEEEECCCGG--GTTCTTCSEEEEEES---CCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCCChH--HcCCCCCCEEECCCCccCCChh--hccCCcccEeecCCc---ccCchh--hccCCCCCEEECcCCcCCC
Confidence            555555443  4555566666666666555442  566677777777543   223333  6788889999999888887


Q ss_pred             cCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCC
Q psy8029         287 LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGL  366 (693)
Q Consensus       287 ~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l  366 (693)
                      ++.  +..+++|+.|++++| .+..+++  +..+++|++|++++|.++.++.  +..+++|+.|++++|.+++++....+
T Consensus       192 ~~~--l~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~l  264 (466)
T 1o6v_A          192 ISV--LAKLTNLESLIATNN-QISDITP--LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGL  264 (466)
T ss_dssp             CGG--GGGCTTCSEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCGGGTTC
T ss_pred             Chh--hccCCCCCEEEecCC-ccccccc--ccccCCCCEEECCCCCcccchh--hhcCCCCCEEECCCCccccchhhhcC
Confidence            753  678999999999999 8877766  5779999999999999998854  78899999999999999998888899


Q ss_pred             CCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCc
Q psy8029         367 SGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLK  446 (693)
Q Consensus       367 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  446 (693)
                      ++|++|++++|.++++.+  +..+++|+.|++++|.+++.      .++..+++|++|++++|.++++.+  +..+++|+
T Consensus       265 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  334 (466)
T 1o6v_A          265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI------SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQ  334 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC------GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred             CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc------hhhcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence            999999999999999876  88899999999999999854      347889999999999999999877  78999999


Q ss_pred             EEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccc
Q psy8029         447 ELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIAC  519 (693)
Q Consensus       447 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c  519 (693)
                      .|++++|++++++  .+..+++|+.|++++|++++..+  +..+              ++++.+++++|+|..
T Consensus       335 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l--------------~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          335 RLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANL--------------TRITQLGLNDQAWTN  389 (466)
T ss_dssp             EEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCGG--GTTC--------------TTCCEEECCCEEEEC
T ss_pred             EeECCCCccCCch--hhccCCCCCEEeCCCCccCccch--hhcC--------------CCCCEEeccCCcccC
Confidence            9999999999983  47889999999999999998765  3333              458899999999986

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=9.7e-36  Score=325.85  Aligned_cols=317  Identities=23%  Similarity=0.324  Sum_probs=184.9

Q ss_pred             EEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcC
Q psy8029          79 TLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLG  158 (693)
Q Consensus        79 ~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls  158 (693)
                      .++.++.  .++.++.. +  .+++++|+|++| .++.+++..|.++++|++|+|++|.++++.+..|.++++|++|+|+
T Consensus        15 ~v~c~~~--~l~~ip~~-~--~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~   88 (477)
T 2id5_A           15 AVLCHRK--RFVAVPEG-I--PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR   88 (477)
T ss_dssp             EEECCSC--CCSSCCSC-C--CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EEEeCCC--CcCcCCCC-C--CCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence            4555555  56666532 2  145666666666 6666666666666666666666666666655556666666666666


Q ss_pred             CCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCC
Q psy8029         159 SNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP  238 (693)
Q Consensus       159 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~  238 (693)
                      +|.++.+++..|.++++|++|++++|+++.+.+..|..+++|++|++++|.++.+.+..|.++++|+.|++++|.++.++
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            66666666655666666666666666666665555666666666666666666665555666666666666666665555


Q ss_pred             hhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhc
Q psy8029         239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR  318 (693)
Q Consensus       239 ~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~  318 (693)
                      ...|..+++|+.|++++|.                          +..++...|..+++|+.|++++|..++.++...+.
T Consensus       169 ~~~l~~l~~L~~L~l~~n~--------------------------i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  222 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLN--------------------------INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY  222 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCC--------------------------CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT
T ss_pred             hhHhcccCCCcEEeCCCCc--------------------------CcEeChhhcccCcccceeeCCCCccccccCccccc
Confidence            5555555555555555554                          44444444455555666666665455555555443


Q ss_pred             CCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc--cCCCCCCeEeCCCCccccccccccCCCCCCcEE
Q psy8029         319 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL--VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTV  396 (693)
Q Consensus       319 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  396 (693)
                       ..+|++|++++|.++.++...|..+++|+.|++++|+++.++..  ..+++|++|+|++|.++++.+.+|.++++|++|
T Consensus       223 -~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  301 (477)
T 2id5_A          223 -GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL  301 (477)
T ss_dssp             -TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEE
T ss_pred             -CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEE
Confidence             34677777777777777766666666666666666666554432  445555555555555555555555555555555


Q ss_pred             ECCCCcCcccccccCCCCccCCCCCcEEECCCCCCC
Q psy8029         397 DLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS  432 (693)
Q Consensus       397 ~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  432 (693)
                      ++++|.++..    ....|..+++|++|++++|.+.
T Consensus       302 ~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          302 NVSGNQLTTL----EESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             ECCSSCCSCC----CGGGBSCGGGCCEEECCSSCEE
T ss_pred             ECCCCcCcee----CHhHcCCCcccCEEEccCCCcc
Confidence            5555555433    1223444455555555555444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.1e-35  Score=316.54  Aligned_cols=291  Identities=22%  Similarity=0.333  Sum_probs=208.9

Q ss_pred             CCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEE
Q psy8029         125 TPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLD  204 (693)
Q Consensus       125 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  204 (693)
                      ++++++|++++|.++.+|...|..+++|++|++++|.++.+++..|..+++|++|++++|+++++++..|+.+++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            57888999999888888888888888999999998888888888888888899999988888888888788888888888


Q ss_pred             CcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCC
Q psy8029         205 ISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI  284 (693)
Q Consensus       205 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l  284 (693)
                      +++|.++.++...|..+++|++|++++|.++.+++..|..+++|++|++++|.  +..++   +..+++|+.+++++|.+
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~---~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVD---LSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC--CSBCC---GGGCTTCSEEECCSSCC
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc--CCccc---cccccccceeecccccc
Confidence            88888888888777888888888888888877776666666667777666665  22332   23344455555544443


Q ss_pred             cccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCcc
Q psy8029         285 AELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV  364 (693)
Q Consensus       285 ~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~  364 (693)
                      ..                         ++     ..++|++|++++|.++.++..   ..++|+.|++++|.+++.+...
T Consensus       199 ~~-------------------------~~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~l~  245 (390)
T 3o6n_A          199 ST-------------------------LA-----IPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDTAWLL  245 (390)
T ss_dssp             SE-------------------------EE-----CCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCCGGGG
T ss_pred             cc-------------------------cC-----CCCcceEEECCCCeeeecccc---ccccccEEECCCCCCcccHHHc
Confidence            32                         21     223566666666666655432   2456777777777777665556


Q ss_pred             CCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCC
Q psy8029         365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTS  444 (693)
Q Consensus       365 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  444 (693)
                      .+++|++|++++|.++++.+..|..+++|++|++++|.++..     +..+..+++|++|++++|+++++++. +..+++
T Consensus       246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~  319 (390)
T 3o6n_A          246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-----NLYGQPIPTLKVLDLSHNHLLHVERN-QPQFDR  319 (390)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-----ECSSSCCTTCCEEECCSSCCCCCGGG-HHHHTT
T ss_pred             CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-----CcccCCCCCCCEEECCCCcceecCcc-ccccCc
Confidence            677777888888888777777777788888888888877754     23345567777777777777765443 566667


Q ss_pred             CcEEECCCCCCccCC
Q psy8029         445 LKELDLRHNNFSFIP  459 (693)
Q Consensus       445 L~~L~L~~N~l~~~~  459 (693)
                      |+.|++++|+|+.++
T Consensus       320 L~~L~L~~N~i~~~~  334 (390)
T 3o6n_A          320 LENLYLDHNSIVTLK  334 (390)
T ss_dssp             CSEEECCSSCCCCCC
T ss_pred             CCEEECCCCccceeC
Confidence            777777777666553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.8e-35  Score=319.52  Aligned_cols=373  Identities=23%  Similarity=0.249  Sum_probs=256.5

Q ss_pred             CCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccc-------------cEEEccCCcCc
Q psy8029          48 GPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFV-------------KHILLSHNKEI  114 (693)
Q Consensus        48 ~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L-------------~~L~Ls~n~~i  114 (693)
                      .+++++.++++.+.  .++..  ...++.|+.|+++++  .++...+..++++.+|             ++|++++| ++
T Consensus        11 ~~L~~L~l~~n~l~--~iP~~--i~~L~~L~~L~l~~n--~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l   83 (454)
T 1jl5_A           11 TFLQEPLRHSSNLT--EMPVE--AENVKSKTEYYNAWS--EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GL   83 (454)
T ss_dssp             ---------------------------CCHHHHHHHHH--HHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CC
T ss_pred             ccchhhhcccCchh--hCChh--HhcccchhhhhccCC--cccccCCcccccchhcchhhhhhhhccCCCEEEecCC-cc
Confidence            57788999998883  33322  246888999999998  8875555788888875             88999998 88


Q ss_pred             ccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhc
Q psy8029         115 TGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIF  194 (693)
Q Consensus       115 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  194 (693)
                      ++++..    .++|++|++++|.++++|..    .++|++|++++|.+++++..    .++|++|++++|++++++  .|
T Consensus        84 ~~lp~~----~~~L~~L~l~~n~l~~lp~~----~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp--~~  149 (454)
T 1jl5_A           84 SSLPEL----PPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP--EL  149 (454)
T ss_dssp             SCCCSC----CTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC--CC
T ss_pred             ccCCCC----cCCCCEEEccCCcCCccccc----cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc--cc
Confidence            887762    36889999999988887642    47889999998888876531    268899999999888866  38


Q ss_pred             CCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCc
Q psy8029         195 NNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLL  274 (693)
Q Consensus       195 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L  274 (693)
                      +++++|++|++++|++++++..    .++|++|++++|.++.++.  +..+++|++|++++|.  +..+|..    .++|
T Consensus       150 ~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~l~~N~--l~~l~~~----~~~L  217 (454)
T 1jl5_A          150 QNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNS--LKKLPDL----PLSL  217 (454)
T ss_dssp             TTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSC--CSSCCCC----CTTC
T ss_pred             CCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCcc--ccCCCCCCEEECCCCc--CCcCCCC----cCcc
Confidence            8888999999999988887643    3588899999988888763  7888888899888887  4455543    2588


Q ss_pred             cEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccC
Q psy8029         275 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN  354 (693)
Q Consensus       275 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~  354 (693)
                      ++|++++|.+..++.  +..+++|++|++++| .+..+|..    +++|++|++++|.++.+|..    +++|+.|++++
T Consensus       218 ~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N-~l~~l~~~----~~~L~~L~l~~N~l~~l~~~----~~~L~~L~ls~  286 (454)
T 1jl5_A          218 ESIVAGNNILEELPE--LQNLPFLTTIYADNN-LLKTLPDL----PPSLEALNVRDNYLTDLPEL----PQSLTFLDVSE  286 (454)
T ss_dssp             CEEECCSSCCSSCCC--CTTCTTCCEEECCSS-CCSSCCSC----CTTCCEEECCSSCCSCCCCC----CTTCCEEECCS
T ss_pred             cEEECcCCcCCcccc--cCCCCCCCEEECCCC-cCCccccc----ccccCEEECCCCcccccCcc----cCcCCEEECcC
Confidence            888888888887773  678888888888888 77777752    47888888888888887752    47888888888


Q ss_pred             CcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcC
Q psy8029         355 NQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL  434 (693)
Q Consensus       355 n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  434 (693)
                      |++++++..  .++|++|++++|.++++..    ..++|++|++++|++++.     +.   .+++|++|++++|+++++
T Consensus       287 N~l~~l~~~--~~~L~~L~l~~N~l~~i~~----~~~~L~~L~Ls~N~l~~l-----p~---~~~~L~~L~L~~N~l~~l  352 (454)
T 1jl5_A          287 NIFSGLSEL--PPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIEL-----PA---LPPRLERLIASFNHLAEV  352 (454)
T ss_dssp             SCCSEESCC--CTTCCEEECCSSCCSEECC----CCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCSCC
T ss_pred             CccCcccCc--CCcCCEEECcCCcCCcccC----CcCcCCEEECCCCccccc-----cc---cCCcCCEEECCCCccccc
Confidence            888876643  3678888888888887542    125788888888888753     21   257888888888888876


Q ss_pred             ChhHHhcCCCCcEEECCCCCCccCC--CcccccC-------------CCccEEECCCCCCcee
Q psy8029         435 FDDWISSMTSLKELDLRHNNFSFIP--DQLDSIV-------------SNKLTLDLSFNQIAIV  482 (693)
Q Consensus       435 ~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l-------------~~L~~L~L~~N~l~~~  482 (693)
                      +.    .+++|+.|++++|++++++  +..+..+             ++|+.|++++|+++++
T Consensus       353 p~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~  411 (454)
T 1jl5_A          353 PE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF  411 (454)
T ss_dssp             CC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------
T ss_pred             cc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcc
Confidence            55    4678888888888888732  3334444             6677888888877753

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.8e-34  Score=311.86  Aligned_cols=313  Identities=22%  Similarity=0.244  Sum_probs=154.5

Q ss_pred             cCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCC
Q psy8029          96 YFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTS  175 (693)
Q Consensus        96 ~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  175 (693)
                      .++++++|++|++++| .+++++  .+..+++|++|++++|.+++++   ++.+++|++|++++|.+++++   ++++++
T Consensus        37 ~~~~l~~L~~L~Ls~n-~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~  107 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNS-SITDMT--GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTK  107 (457)
T ss_dssp             EHHHHTTCCEEECCSS-CCCCCT--TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTT
T ss_pred             ChhHcCCCCEEEccCC-CcccCh--hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCCc
Confidence            4445555555555555 555553  2455555555555555555542   455555555555555555542   455555


Q ss_pred             CCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCc-cccCChhhhhcccCceEEEEe
Q psy8029         176 LRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR-FQMFPKDLFAEMKYLQVIKIS  254 (693)
Q Consensus       176 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~  254 (693)
                      |++|++++|++++++   ++.+++|++|++++|.+++++   +..+++|++|++++|. +..++   +..+++|++|+++
T Consensus       108 L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls  178 (457)
T 3bz5_A          108 LTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCS  178 (457)
T ss_dssp             CCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECC
T ss_pred             CCEEECCCCcCCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCcccccc---cccCCcCCEEECC
Confidence            555555555555542   455555555555555555542   4455555555555552 22331   3445555555555


Q ss_pred             cCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCC
Q psy8029         255 YHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK  334 (693)
Q Consensus       255 ~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~  334 (693)
                      +|.  ++.++   +..+++|+.|++++|.+++++   +..+++|+.|++++| .++.+|   +..+++|++|++++|.++
T Consensus       179 ~n~--l~~l~---l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N-~l~~ip---~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          179 FNK--ITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSN-KLTEID---VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             SSC--CCCCC---CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSSCCS
T ss_pred             CCc--cceec---cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCC-cccccC---ccccCCCCEEEeeCCcCC
Confidence            555  33333   445555555555555555542   445555555555555 555554   345555666666666555


Q ss_pred             CCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccc----c
Q psy8029         335 YLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQ----Y  410 (693)
Q Consensus       335 ~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~  410 (693)
                      .++.   ..+++|+.|++++|+            |+.|++++|.+.+..+  ++.+++|+.|++++|...+.-+.    .
T Consensus       247 ~~~~---~~l~~L~~L~l~~n~------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L  309 (457)
T 3bz5_A          247 ELDV---STLSKLTTLHCIQTD------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGI  309 (457)
T ss_dssp             CCCC---TTCTTCCEEECTTCC------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCC
T ss_pred             CcCH---HHCCCCCEEeccCCC------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcc
Confidence            5542   234444444444432            2223333333222211  22333333333333322111000    0


Q ss_pred             CCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccC
Q psy8029         411 GYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFI  458 (693)
Q Consensus       411 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  458 (693)
                      ....++.+++|++|++++|+++++.   ++.+++|+.|++++|+|+++
T Consensus       310 ~~L~l~~~~~L~~L~L~~N~l~~l~---l~~l~~L~~L~l~~N~l~~l  354 (457)
T 3bz5_A          310 TELDLSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDF  354 (457)
T ss_dssp             SCCCCTTCTTCCEEECTTCCCSCCC---CTTCTTCSEEECCSSCCCBC
T ss_pred             eEechhhcccCCEEECCCCcccccc---cccCCcCcEEECCCCCCCCc
Confidence            0112344456666666666666642   55566666666666666553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=7.1e-34  Score=297.65  Aligned_cols=307  Identities=21%  Similarity=0.330  Sum_probs=215.3

Q ss_pred             cCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCc
Q psy8029         122 FKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLR  201 (693)
Q Consensus       122 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  201 (693)
                      +..+++|++|+++++.++.++.  +..+++|++|++++|.++++++  +..+++|++|++++|+++.++  .+..+++|+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~  113 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTNLR  113 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCS
T ss_pred             chhcccccEEEEeCCccccchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcCCCcCC
Confidence            3456677777777777766654  5667777777777777776655  667777777777777766653  366666777


Q ss_pred             EEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCC
Q psy8029         202 SLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGE  281 (693)
Q Consensus       202 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~  281 (693)
                      +|++++|.++.+++  +..+++|+.|++++|......+.                           +..+++|++|++++
T Consensus       114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~---------------------------~~~l~~L~~L~l~~  164 (347)
T 4fmz_A          114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP---------------------------LSNMTGLNYLTVTE  164 (347)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG---------------------------GTTCTTCCEEECCS
T ss_pred             EEECcCCcccCchh--hccCCceeEEECCCCCCcccccc---------------------------hhhCCCCcEEEecC
Confidence            77777666666554  55566666666666533222111                           34455555555555


Q ss_pred             CCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCcccc
Q psy8029         282 SSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  361 (693)
Q Consensus       282 n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~  361 (693)
                      |.+..++.  +..+++|+.|++++| .+..++.  +..+++|+.+++++|.++.++.  +..+++|++|++++|+++.++
T Consensus       165 ~~~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~  237 (347)
T 4fmz_A          165 SKVKDVTP--IANLTDLYSLSLNYN-QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS  237 (347)
T ss_dssp             SCCCCCGG--GGGCTTCSEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred             CCcCCchh--hccCCCCCEEEccCC-ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc
Confidence            55554443  455666666666666 5655554  4567777777777777776665  567777888888888777777


Q ss_pred             CccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhc
Q psy8029         362 SLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISS  441 (693)
Q Consensus       362 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  441 (693)
                      ....+++|++|++++|.++++  ..+..+++|++|++++|.++..      ..+..+++|++|++++|.+++..+..+..
T Consensus       238 ~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  309 (347)
T 4fmz_A          238 PLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLNNNQLGNEDMEVIGG  309 (347)
T ss_dssp             GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCGGGHHHHHT
T ss_pred             chhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC------hhhcCCCCCCEEECcCCcCCCcChhHhhc
Confidence            677777888888888888776  3577788888888888888743      35677889999999999999888888899


Q ss_pred             CCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCc
Q psy8029         442 MTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIA  480 (693)
Q Consensus       442 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  480 (693)
                      +++|+.|++++|+++++++  +..+++|+.|++++|+|+
T Consensus       310 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          310 LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             cccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            9999999999999998876  678888999999999876

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3e-34  Score=305.35  Aligned_cols=287  Identities=26%  Similarity=0.382  Sum_probs=167.3

Q ss_pred             cccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEE
Q psy8029         100 LHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRIL  179 (693)
Q Consensus       100 l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  179 (693)
                      ++++++|+++++ .++.++...|.++++|++|++++|.++++++..|..+++|++|++++|.+.++++..|.++++|++|
T Consensus        44 l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            355566666666 5666665555556666666666666666555556666666666666666666666556666666666


Q ss_pred             EccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCc
Q psy8029         180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDS  259 (693)
Q Consensus       180 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~  259 (693)
                      ++++|+++.+++..|+.+++|++|++++|.++.+++..|..+++|++|++++|.++.++   +..+++|+.+++++|.+.
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccccc
Confidence            66666666665555566666666666666666666655666666666666666666554   234566667777666522


Q ss_pred             ccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChh
Q psy8029         260 LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN  339 (693)
Q Consensus       260 ~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~  339 (693)
                        .+     ...+.|++|++++|.+..++...   .++|+.|++++| .++..+  .+..+++|++|++++|.++.+++.
T Consensus       200 --~~-----~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~  266 (390)
T 3o6n_A          200 --TL-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHN-NLTDTA--WLLNYPGLVEVDLSYNELEKIMYH  266 (390)
T ss_dssp             --EE-----ECCSSCSEEECCSSCCCEEECCC---CSSCCEEECCSS-CCCCCG--GGGGCTTCSEEECCSSCCCEEESG
T ss_pred             --cc-----CCCCcceEEECCCCeeeeccccc---cccccEEECCCC-CCcccH--HHcCCCCccEEECCCCcCCCcChh
Confidence              22     23346777777777776654322   355666666666 555542  245666666666666666665555


Q ss_pred             hhccCccCceEeccCCcCccccCc-cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCc
Q psy8029         340 LFESLKELYTLNLKNNQLENITSL-VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT  404 (693)
Q Consensus       340 ~~~~~~~L~~L~Ls~n~l~~l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  404 (693)
                      .|..+++|+.|++++|++++++.. ..+++|++|++++|.+.++++ .+..+++|++|++++|.++
T Consensus       267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~~N~i~  331 (390)
T 3o6n_A          267 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER-NQPQFDRLENLYLDHNSIV  331 (390)
T ss_dssp             GGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGG-GHHHHTTCSEEECCSSCCC
T ss_pred             HccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCc-cccccCcCCEEECCCCccc
Confidence            556666666666666666555443 344555555555555544332 2333344444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.7e-34  Score=322.54  Aligned_cols=291  Identities=23%  Similarity=0.340  Sum_probs=199.3

Q ss_pred             CCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEE
Q psy8029         125 TPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLD  204 (693)
Q Consensus       125 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  204 (693)
                      +.+++.+++++|.+..+|+..|..+++|++|++++|.+.++++..|..+++|++|+|++|.++++++..|+++++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            46778888888888888877777788888888888888888777778888888888888888887777777788888888


Q ss_pred             CcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCC
Q psy8029         205 ISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI  284 (693)
Q Consensus       205 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l  284 (693)
                      +++|.++.+++..|.++++|++|++++|.++.+++..|..+++|++|++++|.  +..++   +..+++|+.|++     
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~---~~~l~~L~~L~l-----  199 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVD---LSLIPSLFHANV-----  199 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC--CSBCC---GGGCTTCSEEEC-----
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC--CCCcC---hhhhhhhhhhhc-----
Confidence            88888887777777777777777777777776666556666666666666655  22222   223344444444     


Q ss_pred             cccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCcc
Q psy8029         285 AELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV  364 (693)
Q Consensus       285 ~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~  364 (693)
                                         ++| .++.++     ..++|++|++++|.++.++...   .++|+.|++++|.+++.+...
T Consensus       200 -------------------~~n-~l~~l~-----~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~l~  251 (597)
T 3oja_B          200 -------------------SYN-LLSTLA-----IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDTAWLL  251 (597)
T ss_dssp             -------------------CSS-CCSEEE-----CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCCGGGG
T ss_pred             -------------------ccC-cccccc-----CCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCChhhc
Confidence                               444 333221     2345666666666666554422   356777777777777665556


Q ss_pred             CCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCC
Q psy8029         365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTS  444 (693)
Q Consensus       365 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  444 (693)
                      .+++|++|+|++|.+.++.+..|..+++|+.|+|++|.+++.     +..+..+++|+.|+|++|.++++++. +..+++
T Consensus       252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-----~~~~~~l~~L~~L~Ls~N~l~~i~~~-~~~l~~  325 (597)
T 3oja_B          252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-----NLYGQPIPTLKVLDLSHNHLLHVERN-QPQFDR  325 (597)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-----ECSSSCCTTCCEEECCSSCCCCCGGG-HHHHTT
T ss_pred             cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-----CcccccCCCCcEEECCCCCCCccCcc-cccCCC
Confidence            677777788888888777777777777888888887777754     33345567777777777777765433 566677


Q ss_pred             CcEEECCCCCCccCC
Q psy8029         445 LKELDLRHNNFSFIP  459 (693)
Q Consensus       445 L~~L~L~~N~l~~~~  459 (693)
                      |+.|+|++|+|++++
T Consensus       326 L~~L~L~~N~l~~~~  340 (597)
T 3oja_B          326 LENLYLDHNSIVTLK  340 (597)
T ss_dssp             CSEEECCSSCCCCCC
T ss_pred             CCEEECCCCCCCCcC
Confidence            777777777666553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=9.7e-34  Score=296.60  Aligned_cols=308  Identities=22%  Similarity=0.372  Sum_probs=190.2

Q ss_pred             cCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCC
Q psy8029          96 YFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTS  175 (693)
Q Consensus        96 ~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  175 (693)
                      .+..+++|++|+++++ .+..++.  +..+++|++|++++|.+++++.  |..+++|++|++++|.++.++  .+..+++
T Consensus        39 ~~~~l~~L~~L~l~~~-~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~l~~  111 (347)
T 4fmz_A           39 TQEELESITKLVVAGE-KVASIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTN  111 (347)
T ss_dssp             CHHHHTTCSEEECCSS-CCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTT
T ss_pred             cchhcccccEEEEeCC-ccccchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcCCCc
Confidence            3556778888888888 7777754  6778888888888888877765  678888888888888877763  3778888


Q ss_pred             CCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEec
Q psy8029         176 LRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISY  255 (693)
Q Consensus       176 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  255 (693)
                      |++|++++|+++++++  +..+++|++|++++|......+. +..+++|++|++++|.+..++.  +..+++|++|++++
T Consensus       112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~  186 (347)
T 4fmz_A          112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY  186 (347)
T ss_dssp             CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred             CCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence            8888888888877655  67888888888888854433322 6778888888888887776654  55666777777766


Q ss_pred             CCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCC
Q psy8029         256 HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY  335 (693)
Q Consensus       256 n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~  335 (693)
                      |.  +..++.  +..+++|+.+++++|.+..++.  +..+++|+.|++++| .++.++.  +..+++|++|++++|.++.
T Consensus       187 n~--l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~  257 (347)
T 4fmz_A          187 NQ--IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN-KITDLSP--LANLSQLTWLEIGTNQISD  257 (347)
T ss_dssp             SC--CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             Cc--cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCC-ccCCCcc--hhcCCCCCEEECCCCccCC
Confidence            65  334433  4555666666666665555443  344555555555555 4444443  3445555555555555544


Q ss_pred             CChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCc
Q psy8029         336 LPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPL  415 (693)
Q Consensus       336 ~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  415 (693)
                      ++.  +..+++|+.|++++|++++++.                        +..+++|++|++++|.++..    .+..+
T Consensus       258 ~~~--~~~l~~L~~L~l~~n~l~~~~~------------------------~~~l~~L~~L~L~~n~l~~~----~~~~l  307 (347)
T 4fmz_A          258 INA--VKDLTKLKMLNVGSNQISDISV------------------------LNNLSQLNSLFLNNNQLGNE----DMEVI  307 (347)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCCCGG------------------------GGGCTTCSEEECCSSCCCGG----GHHHH
T ss_pred             Chh--HhcCCCcCEEEccCCccCCChh------------------------hcCCCCCCEEECcCCcCCCc----ChhHh
Confidence            422  3444445555555444444433                        44445555555555554433    12334


Q ss_pred             cCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCc
Q psy8029         416 KQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFS  456 (693)
Q Consensus       416 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  456 (693)
                      ..+++|++|++++|.++++++  +..+++|+.|++++|+|+
T Consensus       308 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          308 GGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             HTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             hccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            445555555555555555544  455666666666666554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.4e-33  Score=303.11  Aligned_cols=318  Identities=21%  Similarity=0.215  Sum_probs=262.7

Q ss_pred             CcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChh
Q psy8029         113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRA  192 (693)
Q Consensus       113 ~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  192 (693)
                      .+.......++++++|++|++++|.+++++  .|..+++|++|++++|.+++++   ++.+++|++|++++|++++++  
T Consensus        29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--  101 (457)
T 3bz5_A           29 EMQATDTISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--  101 (457)
T ss_dssp             TCCTTSEEEHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--
T ss_pred             CcCcccccChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--
Confidence            334444445778899999999999999886  3789999999999999999984   789999999999999999874  


Q ss_pred             hcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCC
Q psy8029         193 IFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP  272 (693)
Q Consensus       193 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~  272 (693)
                       ++.+++|++|++++|.+++++   +..+++|++|++++|.++.++   +..+++|++|++++|.. +..+   .+..++
T Consensus       102 -~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~-~~~~---~~~~l~  170 (457)
T 3bz5_A          102 -VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKK-ITKL---DVTPQT  170 (457)
T ss_dssp             -CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSC-CCCC---CCTTCT
T ss_pred             -cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCc-cccc---ccccCC
Confidence             789999999999999999874   788999999999999999875   67889999999999853 2233   367889


Q ss_pred             CccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEec
Q psy8029         273 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNL  352 (693)
Q Consensus       273 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  352 (693)
                      +|+.|++++|.+++++   +..+++|+.|++++| .++.++   +..+++|++|++++|+++.+|   +..+++|+.|++
T Consensus       171 ~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N-~l~~~~---l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l  240 (457)
T 3bz5_A          171 QLTTLDCSFNKITELD---VSQNKLLNRLNCDTN-NITKLD---LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDC  240 (457)
T ss_dssp             TCCEEECCSSCCCCCC---CTTCTTCCEEECCSS-CCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEEC
T ss_pred             cCCEEECCCCccceec---cccCCCCCEEECcCC-cCCeec---cccCCCCCEEECcCCcccccC---ccccCCCCEEEe
Confidence            9999999999998886   677888999999988 777774   577889999999999888877   567888999999


Q ss_pred             cCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCC
Q psy8029         353 KNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS  432 (693)
Q Consensus       353 s~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  432 (693)
                      ++|++++++ ...+++|+.|++++|              +|+.|++++|.+.+.      .++..+++|+.|++++|...
T Consensus       241 ~~N~l~~~~-~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~------~~~~~l~~L~~L~Ls~n~~l  299 (457)
T 3bz5_A          241 SVNPLTELD-VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIY------FQAEGCRKIKELDVTHNTQL  299 (457)
T ss_dssp             CSSCCSCCC-CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCE------EECTTCTTCCCCCCTTCTTC
T ss_pred             eCCcCCCcC-HHHCCCCCEEeccCC--------------CCCEEECCCCccCCc------ccccccccCCEEECCCCccc
Confidence            999888876 456788888888765              456777888876633      34577899999999999755


Q ss_pred             cCChh--------HHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCcee
Q psy8029         433 SLFDD--------WISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIV  482 (693)
Q Consensus       433 ~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  482 (693)
                      +..|.        .+.++++|+.|++++|++++++   +..+++|+.|++++|+++++
T Consensus       300 ~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~---l~~l~~L~~L~l~~N~l~~l  354 (457)
T 3bz5_A          300 YLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDF  354 (457)
T ss_dssp             CEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC---CTTCTTCSEEECCSSCCCBC
T ss_pred             ceeccCCCcceEechhhcccCCEEECCCCcccccc---cccCCcCcEEECCCCCCCCc
Confidence            43332        2557789999999999999973   67889999999999999974

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4.4e-33  Score=312.65  Aligned_cols=309  Identities=26%  Similarity=0.359  Sum_probs=194.8

Q ss_pred             cccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEE
Q psy8029         100 LHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRIL  179 (693)
Q Consensus       100 l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  179 (693)
                      +.+++.+++++| .+..+++..|.++++|++|++++|.++++++..|+.+++|++|+|++|.+.++++..|+++++|++|
T Consensus        50 l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            455666666666 6666666666666666666666666666666566666666666666666666666666666666666


Q ss_pred             EccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCc
Q psy8029         180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDS  259 (693)
Q Consensus       180 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~  259 (693)
                      ++++|.++.+++..|+++++|++|++++|.++.+++..|..+++|++|++++|.++.++.   ..+++|+.|++++|.+.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL---SLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG---GGCTTCSEEECCSSCCS
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh---hhhhhhhhhhcccCccc
Confidence            666666666666666666667777777776666666666666777777777776666653   34566777777776532


Q ss_pred             ccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChh
Q psy8029         260 LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN  339 (693)
Q Consensus       260 ~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~  339 (693)
                        .     +...+.|+.|++++|.+..++...   .++|+.|++++| .++..+  .+..+++|++|++++|.++.+++.
T Consensus       206 --~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n-~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~  272 (597)
T 3oja_B          206 --T-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHN-NLTDTA--WLLNYPGLVEVDLSYNELEKIMYH  272 (597)
T ss_dssp             --E-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSS-CCCCCG--GGGGCTTCSEEECCSSCCCEEESG
T ss_pred             --c-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCC-CCCCCh--hhccCCCCCEEECCCCccCCCCHH
Confidence              2     233446777777777776655433   246677777776 555542  245677777777777777766555


Q ss_pred             hhccCccCceEeccCCcCccccCc-cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCC
Q psy8029         340 LFESLKELYTLNLKNNQLENITSL-VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQC  418 (693)
Q Consensus       340 ~~~~~~~L~~L~Ls~n~l~~l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l  418 (693)
                      .|..+++|+.|+|++|.+++++.. ..+++|++|+|++|.+.++++ .+..+++|++|++++|.++..       ++..+
T Consensus       273 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~l~~L~~L~L~~N~l~~~-------~~~~~  344 (597)
T 3oja_B          273 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER-NQPQFDRLENLYLDHNSIVTL-------KLSTH  344 (597)
T ss_dssp             GGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGG-GHHHHTTCSEEECCSSCCCCC-------CCCTT
T ss_pred             HhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCc-ccccCCCCCEEECCCCCCCCc-------Chhhc
Confidence            566677777777777777666554 446666666666666665433 344555666666666665522       24445


Q ss_pred             CCCcEEECCCCCCCc
Q psy8029         419 VNLETINLSYNRISS  433 (693)
Q Consensus       419 ~~L~~L~Ls~n~l~~  433 (693)
                      ++|+.|++++|.+.+
T Consensus       345 ~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          345 HTLKNLTLSHNDWDC  359 (597)
T ss_dssp             CCCSEEECCSSCEEH
T ss_pred             CCCCEEEeeCCCCCC
Confidence            555555555555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=100.00  E-value=3.1e-32  Score=294.43  Aligned_cols=291  Identities=22%  Similarity=0.308  Sum_probs=223.5

Q ss_pred             eEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEc
Q psy8029         249 QVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL  328 (693)
Q Consensus       249 ~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l  328 (693)
                      +.++..+..  ++.+|....   ++++.|++++|.+..++...|.++++|++|++++| .+..++...|.++++|++|++
T Consensus        46 ~~v~c~~~~--l~~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           46 SKVICVRKN--LREVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             CEEECCSCC--CSSCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEEC
T ss_pred             CEEEeCCCC--cCcCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEEC
Confidence            344444444  445555422   45666777777777666666677777777777777 677777666777777777777


Q ss_pred             cCCCCCCCChhhhccCccCceEeccCCcCccccCc--cCCCCCCeEeCCC-CccccccccccCCCCCCcEEECCCCcCcc
Q psy8029         329 QRNKLKYLPENLFESLKELYTLNLKNNQLENITSL--VGLSGLNSLDLSW-NQLEQINLIAFDGLSSLNTVDLSHNLLTF  405 (693)
Q Consensus       329 ~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  405 (693)
                      ++|.++.++...|..+++|++|++++|+++.++..  ..+++|++|++++ +.+..+.+..|.++++|++|++++|.++.
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  199 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE  199 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence            77777777776677777777777777777776653  6777888888887 55667777788899999999999999884


Q ss_pred             cccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeecc
Q psy8029         406 DEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLR  485 (693)
Q Consensus       406 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  485 (693)
                      .      ..+..+++|++|+|++|.++++.+..|.++++|+.|++++|+|+++++..+..+++|+.|+|++|+++.++..
T Consensus       200 ~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  273 (440)
T 3zyj_A          200 I------PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD  273 (440)
T ss_dssp             C------CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT
T ss_pred             c------cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChh
Confidence            3      3578889999999999999999999999999999999999999999998899999999999999999988877


Q ss_pred             chhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCC---CCcccccc
Q psy8029         486 TLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINSV  562 (693)
Q Consensus       486 ~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l  562 (693)
                      .+..+              ++++.+++++|||.|||++.|+..|++.....       .....+.|..|   +|..+.++
T Consensus       274 ~~~~l--------------~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~-------~~~~~~~C~~P~~l~g~~l~~l  332 (440)
T 3zyj_A          274 LFTPL--------------HHLERIHLHHNPWNCNCDILWLSWWIKDMAPS-------NTACCARCNTPPNLKGRYIGEL  332 (440)
T ss_dssp             TTSSC--------------TTCCEEECCSSCEECSSTTHHHHHHHHTTSCS-------SCSCCCBEEESTTTTTCBCC--
T ss_pred             Hhccc--------------cCCCEEEcCCCCccCCCCchHHHHHHHhcccc-------CCccccCCCChhHhcCccHhHh
Confidence            76654              45889999999999999999999999875322       12235789988   78888888


Q ss_pred             CCCCCcccCC
Q psy8029         563 RPENLTCDTK  572 (693)
Q Consensus       563 ~~~~l~c~~~  572 (693)
                      +...+.|..+
T Consensus       333 ~~~~~~C~~P  342 (440)
T 3zyj_A          333 DQNYFTCYAP  342 (440)
T ss_dssp             --CCSCCCCC
T ss_pred             hhhhccCCCC
Confidence            8888888643

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=5.8e-32  Score=281.03  Aligned_cols=294  Identities=20%  Similarity=0.306  Sum_probs=159.1

Q ss_pred             CcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcC
Q psy8029         128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISG  207 (693)
Q Consensus       128 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  207 (693)
                      ++.++++++.++.+|...   .++|++|++++|.+.++++..|.++++|++|++++|+++++.+..|+++++|++|++++
T Consensus        35 l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           35 LRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             TTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             CCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            444444444444443322   13444444444444444444444444444444444444444444444444444444444


Q ss_pred             CCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCccc
Q psy8029         208 NNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL  287 (693)
Q Consensus       208 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~  287 (693)
                      |.++.++...+   ++|++|++++|.++.++...|..+++|++|++++|.+....+....|..+ +|+.|++++|.++.+
T Consensus       112 n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l  187 (332)
T 2ft3_A          112 NHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI  187 (332)
T ss_dssp             SCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred             CcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence            44444443322   44555555555555554444555555555555555432112333345555 677777777777766


Q ss_pred             CcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc-cCC
Q psy8029         288 PSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL-VGL  366 (693)
Q Consensus       288 ~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~-~~l  366 (693)
                      +...+   ++|++|++++| .++.++...|..+++|++|++++|.++.++...|..+++|+.|++++|+++.+|.. ..+
T Consensus       188 ~~~~~---~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l  263 (332)
T 2ft3_A          188 PKDLP---ETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDL  263 (332)
T ss_dssp             CSSSC---SSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGC
T ss_pred             Ccccc---CCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcC
Confidence            65443   56667777777 66666655566777777777777777777666667777777777777777766654 556


Q ss_pred             CCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCC--cCChhHHhcCCC
Q psy8029         367 SGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS--SLFDDWISSMTS  444 (693)
Q Consensus       367 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~  444 (693)
                      ++|++|++++|.++++++..|....                      .....+.|+.|++++|.+.  ++.+.+|..+++
T Consensus       264 ~~L~~L~l~~N~l~~~~~~~~~~~~----------------------~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~  321 (332)
T 2ft3_A          264 KLLQVVYLHTNNITKVGVNDFCPVG----------------------FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD  321 (332)
T ss_dssp             TTCCEEECCSSCCCBCCTTSSSCSS----------------------CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCC
T ss_pred             ccCCEEECCCCCCCccChhHccccc----------------------cccccccccceEeecCcccccccCcccccccch
Confidence            6666666666666666555554321                      0011345666666666655  455666666666


Q ss_pred             CcEEECCCCC
Q psy8029         445 LKELDLRHNN  454 (693)
Q Consensus       445 L~~L~L~~N~  454 (693)
                      |+.+++++|+
T Consensus       322 L~~l~l~~n~  331 (332)
T 2ft3_A          322 RLAIQFGNYK  331 (332)
T ss_dssp             STTEEC----
T ss_pred             hhhhhccccc
Confidence            6666666653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=100.00  E-value=6.5e-32  Score=292.96  Aligned_cols=290  Identities=24%  Similarity=0.302  Sum_probs=223.4

Q ss_pred             EEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEcc
Q psy8029         250 VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQ  329 (693)
Q Consensus       250 ~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~  329 (693)
                      .++.++..  ++.+|...   .++++.|++++|.++.+++..|.++++|+.|++++| .++.++...|.++++|++|+++
T Consensus        58 ~v~c~~~~--l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           58 KVVCTRRG--LSEVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             EEECCSSC--CSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred             EEEECCCC--cCccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECC
Confidence            44444443  33455432   245666666666666666666666777777777777 6666666666777777777777


Q ss_pred             CCCCCCCChhhhccCccCceEeccCCcCccccCc--cCCCCCCeEeCCC-CccccccccccCCCCCCcEEECCCCcCccc
Q psy8029         330 RNKLKYLPENLFESLKELYTLNLKNNQLENITSL--VGLSGLNSLDLSW-NQLEQINLIAFDGLSSLNTVDLSHNLLTFD  406 (693)
Q Consensus       330 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  406 (693)
                      +|.++.++...|..+++|++|++++|+++.++..  ..+++|++|++++ +.+..+.+..|.++++|++|++++|.++..
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            7777777776677777777777777777776653  6677788888877 566677777888999999999999999843


Q ss_pred             ccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccc
Q psy8029         407 EYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRT  486 (693)
Q Consensus       407 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  486 (693)
                            ..+..+++|++|+|++|.++++.+..|.++++|+.|++++|+++++++..+..+++|+.|+|++|+|+.++...
T Consensus       212 ------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  285 (452)
T 3zyi_A          212 ------PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL  285 (452)
T ss_dssp             ------CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred             ------ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence                  45778899999999999999999999999999999999999999999988999999999999999999888777


Q ss_pred             hhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCC---CCccccccC
Q psy8029         487 LEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINSVR  563 (693)
Q Consensus       487 ~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~  563 (693)
                      +..+              ++++.+++++|||.|||++.|+..|++.....       .....++|..|   +|..+.+++
T Consensus       286 ~~~l--------------~~L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~-------~~~~~~~C~~P~~l~g~~l~~~~  344 (452)
T 3zyi_A          286 FTPL--------------RYLVELHLHHNPWNCDCDILWLAWWLREYIPT-------NSTCCGRCHAPMHMRGRYLVEVD  344 (452)
T ss_dssp             STTC--------------TTCCEEECCSSCEECSTTTHHHHHHHHHHC----------CCSSCBEEESTTTTTCBTTSCC
T ss_pred             hccc--------------cCCCEEEccCCCcCCCCCchHHHHHHHHhCcc-------CCccCcEeCCchHhccchhhccc
Confidence            6654              45889999999999999999999999875321       12235689988   777888888


Q ss_pred             CCCCcccCC
Q psy8029         564 PENLTCDTK  572 (693)
Q Consensus       564 ~~~l~c~~~  572 (693)
                      ...+.|..+
T Consensus       345 ~~~~~C~~P  353 (452)
T 3zyi_A          345 QASFQCSAP  353 (452)
T ss_dssp             GGGCCCCCC
T ss_pred             hhhhcccCc
Confidence            777888643

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=2.3e-31  Score=276.34  Aligned_cols=296  Identities=19%  Similarity=0.280  Sum_probs=180.8

Q ss_pred             CCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECc
Q psy8029         127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDIS  206 (693)
Q Consensus       127 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  206 (693)
                      +++.++++++.++.+|...   .++|++|++++|.++++++..|.++++|++|++++|+++++.+..|+.+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            3444444444444444322   1345555555555555555445555555555555555555544455555555555555


Q ss_pred             CCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcc
Q psy8029         207 GNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE  286 (693)
Q Consensus       207 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~  286 (693)
                      +|.++.++...+   ++|++|++++|.++.++...|..+++|++|++++|.+....+....|..+++|++|++++|.++.
T Consensus       109 ~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          109 KNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             SSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            555555554332   56666666666666666666666666777776666643222444456677777777777777777


Q ss_pred             cCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc-cC
Q psy8029         287 LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL-VG  365 (693)
Q Consensus       287 ~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~-~~  365 (693)
                      ++...+   ++|++|++++| .++.++...|..+++|++|++++|.++.++...|..+++|+.|++++|+++.+|.. ..
T Consensus       186 l~~~~~---~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~  261 (330)
T 1xku_A          186 IPQGLP---PSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD  261 (330)
T ss_dssp             CCSSCC---TTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTT
T ss_pred             CCcccc---ccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhcc
Confidence            765443   67777788777 67777666677788888888888888777766677778888888888887777664 66


Q ss_pred             CCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCc--CChhHHhcCC
Q psy8029         366 LSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISS--LFDDWISSMT  443 (693)
Q Consensus       366 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~  443 (693)
                      +++|++|++++|.++++++..|....                      .....+.++.|++++|.+..  +.+..|..++
T Consensus       262 l~~L~~L~l~~N~i~~~~~~~f~~~~----------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~  319 (330)
T 1xku_A          262 HKYIQVVYLHNNNISAIGSNDFCPPG----------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY  319 (330)
T ss_dssp             CSSCCEEECCSSCCCCCCTTSSSCSS----------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred             CCCcCEEECCCCcCCccChhhcCCcc----------------------cccccccccceEeecCcccccccCcccccccc
Confidence            77777777777777777666664320                      01113455566666665542  4555566666


Q ss_pred             CCcEEECCCCC
Q psy8029         444 SLKELDLRHNN  454 (693)
Q Consensus       444 ~L~~L~L~~N~  454 (693)
                      +++.++|++|+
T Consensus       320 ~l~~l~L~~N~  330 (330)
T 1xku_A          320 VRAAVQLGNYK  330 (330)
T ss_dssp             CGGGEEC----
T ss_pred             ceeEEEecccC
Confidence            66666666664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=1.5e-31  Score=277.82  Aligned_cols=286  Identities=22%  Similarity=0.336  Sum_probs=200.4

Q ss_pred             cccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEc
Q psy8029         102 FVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNL  181 (693)
Q Consensus       102 ~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  181 (693)
                      +++.++++++ .++.+|...   .++|++|++++|.++++++..|.++++|++|++++|.++++.+..|.++++|++|++
T Consensus        34 ~l~~l~~~~~-~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDL-GLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSS-CCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCC-CccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            5667777776 666666543   246777777777776666666677777777777777777776666777777777777


Q ss_pred             cCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcccc--CChhhhhcccCceEEEEecCCCc
Q psy8029         182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM--FPKDLFAEMKYLQVIKISYHKDS  259 (693)
Q Consensus       182 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~~~  259 (693)
                      ++|+++.++...+   ++|++|++++|.++.+++..|..+++|+.|++++|.++.  +.+..|..+ +|++|++++|.  
T Consensus       110 ~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~--  183 (332)
T 2ft3_A          110 SKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK--  183 (332)
T ss_dssp             CSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB--
T ss_pred             CCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC--
Confidence            7777766655432   667777777777777766666777777777777777652  445555555 77777777776  


Q ss_pred             ccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChh
Q psy8029         260 LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN  339 (693)
Q Consensus       260 ~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~  339 (693)
                      +..+|...+   ++|++|++++|.++.++...|..+++|+.|++++| .++.++...|..+++|++|++++|.++.+|..
T Consensus       184 l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~  259 (332)
T 2ft3_A          184 LTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLSRVPAG  259 (332)
T ss_dssp             CSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT
T ss_pred             CCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCcCeecChh
Confidence            445665432   57778888888888777777778888888888888 77777776677888888888888888888775


Q ss_pred             hhccCccCceEeccCCcCccccCc--c------CCCCCCeEeCCCCccc--cccccccCCCCCCcEEECCCCc
Q psy8029         340 LFESLKELYTLNLKNNQLENITSL--V------GLSGLNSLDLSWNQLE--QINLIAFDGLSSLNTVDLSHNL  402 (693)
Q Consensus       340 ~~~~~~~L~~L~Ls~n~l~~l~~~--~------~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~  402 (693)
                       +..+++|+.|++++|+++.++..  .      ...+|+.|++++|.+.  ++.+.+|..+++|+.+++++|+
T Consensus       260 -l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          260 -LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             -GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             -hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence             57788888888888888876643  1      1456777888877776  5666677777777777776653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.98  E-value=9.1e-31  Score=271.83  Aligned_cols=286  Identities=20%  Similarity=0.313  Sum_probs=156.6

Q ss_pred             cccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEE
Q psy8029          76 TINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVL  155 (693)
Q Consensus        76 ~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  155 (693)
                      .++.++++++  .++.++.. +  .+++++|++++| .++++++..|.++++|++|++++|.++++.+..|.++++|++|
T Consensus        32 ~l~~l~~~~~--~l~~lp~~-~--~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (330)
T 1xku_A           32 HLRVVQCSDL--GLEKVPKD-L--PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL  105 (330)
T ss_dssp             ETTEEECTTS--CCCSCCCS-C--CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCeEEEecCC--CccccCcc-C--CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence            3555555555  55555422 1  145555555555 5555555555555555555555555555544445555555555


Q ss_pred             EcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCc--CCCCcCCCCCCCcEEEcCCCc
Q psy8029         156 DLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI--LPSGVFSDLRKLQTFYANSNR  233 (693)
Q Consensus       156 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~n~  233 (693)
                      ++++|.++.++...+   ++|++|++++|+++++.+..|.++++|++|++++|.++.  +.+..+..+++|++|++++|.
T Consensus       106 ~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          106 YLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             ECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             ECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence            555555555443322   455555555555555555555555555555555555542  333344444455555555444


Q ss_pred             cccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCC
Q psy8029         234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP  313 (693)
Q Consensus       234 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~  313 (693)
                      ++.                          +|...+   ++|++|++++|.++.+++..|..+++|+.|++++| .++.++
T Consensus       183 l~~--------------------------l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~  232 (330)
T 1xku_A          183 ITT--------------------------IPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVD  232 (330)
T ss_dssp             CCS--------------------------CCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEEC
T ss_pred             ccc--------------------------CCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCceeC
Confidence            444                          443322   45566666666666555555566666666666666 555555


Q ss_pred             hhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc--------cCCCCCCeEeCCCCcccc--cc
Q psy8029         314 STLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL--------VGLSGLNSLDLSWNQLEQ--IN  383 (693)
Q Consensus       314 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--------~~l~~L~~L~Ls~n~l~~--~~  383 (693)
                      ...|..+++|++|++++|.++.+|.. +..+++|++|++++|+++.++..        ...+.++.|++++|.+..  +.
T Consensus       233 ~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~  311 (330)
T 1xku_A          233 NGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ  311 (330)
T ss_dssp             TTTGGGSTTCCEEECCSSCCSSCCTT-TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred             hhhccCCCCCCEEECCCCcCccCChh-hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccC
Confidence            55556666666666666666666654 45666667777777766665543        123456666666666643  44


Q ss_pred             ccccCCCCCCcEEECCCC
Q psy8029         384 LIAFDGLSSLNTVDLSHN  401 (693)
Q Consensus       384 ~~~~~~l~~L~~L~L~~n  401 (693)
                      +..|..+.+++.+++++|
T Consensus       312 ~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          312 PSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             GGGGTTCCCGGGEEC---
T ss_pred             ccccccccceeEEEeccc
Confidence            455555566666666555

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=8.5e-31  Score=269.04  Aligned_cols=285  Identities=22%  Similarity=0.316  Sum_probs=225.4

Q ss_pred             EEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCC--hhhhcCCCCCcEEE
Q psy8029         250 VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP--STLFRDCKKLVKLE  327 (693)
Q Consensus       250 ~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~--~~~~~~~~~L~~L~  327 (693)
                      .++.+++.  ++.+|...   .+++++|++++|.++.++..+|.++++|++|++++| .++.+.  ...+..+++|++|+
T Consensus        11 ~l~c~~~~--l~~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~   84 (306)
T 2z66_A           11 EIRCNSKG--LTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLD   84 (306)
T ss_dssp             EEECCSSC--CSSCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEE
T ss_pred             EEEcCCCC--cccCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEE
Confidence            44554444  44555432   246677777777777777666777777777777777 665442  22245678888888


Q ss_pred             ccCCCCCCCChhhhccCccCceEeccCCcCccccC---ccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCc
Q psy8029         328 LQRNKLKYLPENLFESLKELYTLNLKNNQLENITS---LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLT  404 (693)
Q Consensus       328 l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  404 (693)
                      +++|.++.++.. |..+++|++|++++|+++.++.   ...+++|++|++++|.+.+..+..|..+++|++|++++|.++
T Consensus        85 Ls~n~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           85 LSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CCSCSEEEEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCCccccChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            888888877765 6778889999999998888764   378889999999999999988888999999999999999988


Q ss_pred             ccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeec
Q psy8029         405 FDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDL  484 (693)
Q Consensus       405 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  484 (693)
                      ...   .+..+..+++|++|++++|.++++.+..+..+++|+.|++++|+++++++..+..+++|+.|++++|++++..+
T Consensus       164 ~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          164 ENF---LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             GGE---ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred             ccc---chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence            521   36778899999999999999999988889999999999999999999998888899999999999999998877


Q ss_pred             cchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCC---CCccccc
Q psy8029         485 RTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINS  561 (693)
Q Consensus       485 ~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~  561 (693)
                      ..+..++             .+++.+++++|+|.|+|+..||.+|++.....      ....+.+.|..|   +|..+.+
T Consensus       241 ~~~~~~~-------------~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~------~~~~~~~~C~~p~~~~g~~~~~  301 (306)
T 2z66_A          241 QELQHFP-------------SSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL------LVEVERMECATPSDKQGMPVLS  301 (306)
T ss_dssp             SSCCCCC-------------TTCCEEECTTCCEECSGGGHHHHHHHHHTGGG------BSCGGGCBEEESGGGTTCBGGG
T ss_pred             HHHHhhh-------------ccCCEEEccCCCeecccChHHHHHHHHhhhhh------hccccccccCCchhhCCceeee
Confidence            6665442             35889999999999999999999999864221      234568899988   6766666


Q ss_pred             cC
Q psy8029         562 VR  563 (693)
Q Consensus       562 l~  563 (693)
                      +.
T Consensus       302 ~~  303 (306)
T 2z66_A          302 LN  303 (306)
T ss_dssp             CC
T ss_pred             ec
Confidence            53

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=6.2e-30  Score=259.67  Aligned_cols=263  Identities=25%  Similarity=0.358  Sum_probs=208.3

Q ss_pred             cEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccC
Q psy8029         275 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN  354 (693)
Q Consensus       275 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~  354 (693)
                      +.++.+++.++.+|...   .++++.|++++| .++.++...|..+++|++|++++|.++.+++..|..+++|++|++++
T Consensus        14 ~~~~c~~~~l~~ip~~~---~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCSSCCTTC---CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcccCCcCC---CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            45666666676666433   356777777777 77777766677777888888888877777666677778888888888


Q ss_pred             Cc-CccccCc--cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCC
Q psy8029         355 NQ-LENITSL--VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRI  431 (693)
Q Consensus       355 n~-l~~l~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l  431 (693)
                      |+ ++.++..  ..+++|++|++++|.++++.+..|.++++|++|++++|.++..    ....+..+++|++|++++|++
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l  165 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL----PDDTFRDLGNLTHLFLHGNRI  165 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc----CHhHhccCCCccEEECCCCcc
Confidence            86 7766332  6778888888888888888888888888899999998888865    345578888999999999999


Q ss_pred             CcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEE
Q psy8029         432 SSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVI  511 (693)
Q Consensus       432 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~  511 (693)
                      +++++..+..+++|+.|++++|+++++.+..+..+++|+.|++++|+++.+++..+..+              ++++.++
T Consensus       166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------~~L~~L~  231 (285)
T 1ozn_A          166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL--------------RALQYLR  231 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC--------------TTCCEEE
T ss_pred             cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccC--------------cccCEEe
Confidence            98888888889999999999999998888888888999999999999998776666544              4588999


Q ss_pred             cCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCC---CCccccccCCCCCc
Q psy8029         512 LNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINSVRPENLT  568 (693)
Q Consensus       512 l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~~~~l~  568 (693)
                      +++|||.|+|...|+.+|++...         ...+.+.|..|   +|..+.++...++.
T Consensus       232 l~~N~~~c~~~~~~~~~~l~~~~---------~~~~~~~c~~p~~l~g~~l~~l~~~~l~  282 (285)
T 1ozn_A          232 LNDNPWVCDCRARPLWAWLQKFR---------GSSSEVPCSLPQRLAGRDLKRLAANDLQ  282 (285)
T ss_dssp             CCSSCEECSGGGHHHHHHHHHCC---------SEECCCBEEESGGGTTCBGGGSCGGGSC
T ss_pred             ccCCCccCCCCcHHHHHHHHhcc---------cccCccccCCchHhCCcChhhcCHHHhc
Confidence            99999999999999999987742         34467889988   67778777776664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2e-32  Score=298.31  Aligned_cols=354  Identities=16%  Similarity=0.144  Sum_probs=159.4

Q ss_pred             ccccEEEccCCcCcccccccc-cCCCCCCcEEEeeCCcccccC----cccCCCCCCCcEEEcCCCCCCccChhhh-CCCC
Q psy8029         101 HFVKHILLSHNKEITGLHKDI-FKGTPQLESLNLRGNSITELY----SGVFQYVPKLQVLDLGSNDVAYMDPEIF-KNLT  174 (693)
Q Consensus       101 ~~L~~L~Ls~n~~i~~~~~~~-~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~  174 (693)
                      ++|++|++++| .+++..... +..+++|++|++++|.++...    +..+..+++|++|++++|.+....+..+ ..+.
T Consensus         3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            34555555555 554433222 444555555555555554211    1224445555555555555544322211 2233


Q ss_pred             ----CCCEEEccCCCCCCCC----hhhcCCCCCCcEEECcCCCCCcCCCC-----cCCCCCCCcEEEcCCCccccCC---
Q psy8029         175 ----SLRILNLDHNQLINLT----RAIFNNVPNLRSLDISGNNISILPSG-----VFSDLRKLQTFYANSNRFQMFP---  238 (693)
Q Consensus       175 ----~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~---  238 (693)
                          +|++|++++|+++...    +..+..+++|++|++++|.++.....     .+...++|++|++++|.++...   
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                4666666666555321    34455555566666665555432111     1122345666666666555432   


Q ss_pred             -hhhhhcccCceEEEEecCCCccc---ccCccccCCCCCccEEEcCCCCCcccC----cccccCCCCccEEEecCCCCCC
Q psy8029         239 -KDLFAEMKYLQVIKISYHKDSLK---ELPSGLFANLPLLNTVILGESSIAELP----SDLFWNSTNITNIVLTGHKKLT  310 (693)
Q Consensus       239 -~~~~~~~~~L~~L~l~~n~~~~~---~i~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~~l~  310 (693)
                       ...+..+++|++|++++|.+...   .+........++|++|++++|.++...    ...+..+++|++|++++| .++
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~  240 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLG  240 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCH
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCC
Confidence             22234455666666665552210   011111112445666666666555421    223344555555655555 443


Q ss_pred             cC-----ChhhhcCCCCCcEEEccCCCCCCCC----hhhhccCccCceEeccCCcCccccC-----c--cCCCCCCeEeC
Q psy8029         311 SL-----PSTLFRDCKKLVKLELQRNKLKYLP----ENLFESLKELYTLNLKNNQLENITS-----L--VGLSGLNSLDL  374 (693)
Q Consensus       311 ~l-----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~Ls~n~l~~l~~-----~--~~l~~L~~L~L  374 (693)
                      ..     ....+..+++|++|++++|.++...    ...+..+++|++|++++|.+++...     .  ...++|++|++
T Consensus       241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L  320 (461)
T 1z7x_W          241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV  320 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence            32     1223334556666666666555421    1123445555555555555543111     0  12235555555


Q ss_pred             CCCcccccc----ccccCCCCCCcEEECCCCcCcccccccCCCCcc-CCCCCcEEECCCCCCCc----CChhHHhcCCCC
Q psy8029         375 SWNQLEQIN----LIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLK-QCVNLETINLSYNRISS----LFDDWISSMTSL  445 (693)
Q Consensus       375 s~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L  445 (693)
                      ++|.+++..    +..+..+++|++|++++|.++..+.......+. .+++|++|++++|.+++    ..+..+..+++|
T Consensus       321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L  400 (461)
T 1z7x_W          321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL  400 (461)
T ss_dssp             TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred             CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence            555554432    222333445555555555444321100001111 13445555555555443    233334444555


Q ss_pred             cEEECCCCCCc
Q psy8029         446 KELDLRHNNFS  456 (693)
Q Consensus       446 ~~L~L~~N~l~  456 (693)
                      ++|++++|+++
T Consensus       401 ~~L~l~~N~i~  411 (461)
T 1z7x_W          401 RELDLSNNCLG  411 (461)
T ss_dssp             CEEECCSSSCC
T ss_pred             cEEECCCCCCC
Confidence            55555555444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=9.3e-33  Score=300.97  Aligned_cols=384  Identities=16%  Similarity=0.115  Sum_probs=289.6

Q ss_pred             CCCcEEEeeCCcccccCcc-cCCCCCCCcEEEcCCCCCCcc----ChhhhCCCCCCCEEEccCCCCCCCChhh-cCCCC-
Q psy8029         126 PQLESLNLRGNSITELYSG-VFQYVPKLQVLDLGSNDVAYM----DPEIFKNLTSLRILNLDHNQLINLTRAI-FNNVP-  198 (693)
Q Consensus       126 ~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~-  198 (693)
                      ++|++|++++|+++..+.. .|..+++|++|++++|.+...    .+..+..+++|++|++++|.+++..... +..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            5789999999999875433 377899999999999998853    2456788899999999999987643322 23344 


Q ss_pred             ---CCcEEECcCCCCCcCC----CCcCCCCCCCcEEEcCCCccccCChhhh-----hcccCceEEEEecCCCcccccC--
Q psy8029         199 ---NLRSLDISGNNISILP----SGVFSDLRKLQTFYANSNRFQMFPKDLF-----AEMKYLQVIKISYHKDSLKELP--  264 (693)
Q Consensus       199 ---~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~i~--  264 (693)
                         +|++|++++|.++...    +..+..+++|++|++++|.++......+     ...++|++|++++|.+......  
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               7999999999998532    5567889999999999999875433322     2356899999999984321110  


Q ss_pred             ccccCCCCCccEEEcCCCCCcccCccccc-----CCCCccEEEecCCCCCCcCC----hhhhcCCCCCcEEEccCCCCCC
Q psy8029         265 SGLFANLPLLNTVILGESSIAELPSDLFW-----NSTNITNIVLTGHKKLTSLP----STLFRDCKKLVKLELQRNKLKY  335 (693)
Q Consensus       265 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~~l~~l~----~~~~~~~~~L~~L~l~~n~l~~  335 (693)
                      ...+..+++|++|++++|.+.......+.     ..++|+.|++++| .++..+    ...+..+++|++|++++|.++.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence            23356789999999999998764333332     3669999999999 777643    3345678999999999998875


Q ss_pred             CC-----hhhhccCccCceEeccCCcCcc-----ccCc-cCCCCCCeEeCCCCccccccccccC-----CCCCCcEEECC
Q psy8029         336 LP-----ENLFESLKELYTLNLKNNQLEN-----ITSL-VGLSGLNSLDLSWNQLEQINLIAFD-----GLSSLNTVDLS  399 (693)
Q Consensus       336 ~~-----~~~~~~~~~L~~L~Ls~n~l~~-----l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~  399 (693)
                      ..     ...+..+++|++|++++|+++.     ++.. ..+++|++|++++|.+++.....+.     ..++|++|+++
T Consensus       242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  321 (461)
T 1z7x_W          242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  321 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence            32     3344468999999999999987     3433 5689999999999999866554443     34799999999


Q ss_pred             CCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhc-----CCCCcEEECCCCCCcc----CCCcccccCCCcc
Q psy8029         400 HNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISS-----MTSLKELDLRHNNFSF----IPDQLDSIVSNKL  470 (693)
Q Consensus       400 ~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~  470 (693)
                      +|.++.......+..+..+++|++|++++|.+++..+..+..     .++|+.|++++|++++    ..+..+..+++|+
T Consensus       322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~  401 (461)
T 1z7x_W          322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR  401 (461)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence            999986542223445677899999999999999876665553     7899999999999985    3344567789999


Q ss_pred             EEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccc
Q psy8029         471 TLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIAC  519 (693)
Q Consensus       471 ~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c  519 (693)
                      .|++++|+++......+.......         ..+++.+.+.++.+.+
T Consensus       402 ~L~l~~N~i~~~~~~~l~~~l~~~---------~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          402 ELDLSNNCLGDAGILQLVESVRQP---------GCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             EEECCSSSCCHHHHHHHHHHHTST---------TCCCCEEECTTCCCCH
T ss_pred             EEECCCCCCCHHHHHHHHHHhccC---------CcchhheeecccccCH
Confidence            999999999987665554322110         1358899999988764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=1.3e-29  Score=265.56  Aligned_cols=307  Identities=20%  Similarity=0.316  Sum_probs=155.1

Q ss_pred             CCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEEC
Q psy8029         126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDI  205 (693)
Q Consensus       126 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  205 (693)
                      +.....+.+++.++.+|...+   ++|++|++++|.++++++..|.++++|++|++++|+++++.+..|.++++|++|++
T Consensus        31 ~~~~~c~~~~~~l~~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (353)
T 2z80_A           31 DRNGICKGSSGSLNSIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL  107 (353)
T ss_dssp             CTTSEEECCSTTCSSCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCeEeeCCCCCccccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence            333445555555555554322   34555555555555554444555555555555555555444444444444444444


Q ss_pred             cCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCC-CC
Q psy8029         206 SGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES-SI  284 (693)
Q Consensus       206 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n-~l  284 (693)
                      ++|.++.+++..|.++++|++|++++|.++.++..                         ..|..+++|++|++++| .+
T Consensus       108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-------------------------~~~~~l~~L~~L~l~~n~~~  162 (353)
T 2z80_A          108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET-------------------------SLFSHLTKLQILRVGNMDTF  162 (353)
T ss_dssp             CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSS-------------------------CSCTTCTTCCEEEEEESSSC
T ss_pred             CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCch-------------------------hhhccCCCCcEEECCCCccc
Confidence            44444444443344444444444444444433330                         22333444444444443 23


Q ss_pred             cccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCcc
Q psy8029         285 AELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLV  364 (693)
Q Consensus       285 ~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~  364 (693)
                      ..+++..|.++++|++|++++| .++.+++..|..+++|++|++++|.++.++...+..+++|+.|++++|++++++   
T Consensus       163 ~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~---  238 (353)
T 2z80_A          163 TKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH---  238 (353)
T ss_dssp             CEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC---
T ss_pred             cccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccc---
Confidence            3333333444444444444444 444443333445555555555555555555444444445555555444443322   


Q ss_pred             CCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCc----CChhHHh
Q psy8029         365 GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISS----LFDDWIS  440 (693)
Q Consensus       365 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~  440 (693)
                                         ...+..                         ...++.++.++++++.+++    ..|.++.
T Consensus       239 -------------------~~~l~~-------------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~  274 (353)
T 2z80_A          239 -------------------FSELST-------------------------GETNSLIKKFTFRNVKITDESLFQVMKLLN  274 (353)
T ss_dssp             -------------------CC-------------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHH
T ss_pred             -------------------cccccc-------------------------ccccchhhccccccccccCcchhhhHHHHh
Confidence                               111110                         0112334444444444443    1345677


Q ss_pred             cCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCccccc
Q psy8029         441 SMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACN  520 (693)
Q Consensus       441 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~  520 (693)
                      .+++|+.|++++|+++.++...+..+                                      ++++.+++++|||.|+
T Consensus       275 ~l~~L~~L~Ls~N~l~~i~~~~~~~l--------------------------------------~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          275 QISGLLELEFSRNQLKSVPDGIFDRL--------------------------------------TSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTC--------------------------------------TTCCEEECCSSCBCCC
T ss_pred             cccCCCEEECCCCCCCccCHHHHhcC--------------------------------------CCCCEEEeeCCCccCc
Confidence            88888888888888887766543333                                      3366888999999999


Q ss_pred             CC-cHHHHHHHhcccccceeeeeeeccCceeecCC
Q psy8029         521 CS-NYDLIRFVSKKMTKTVYQMLELVTDNLECFGN  554 (693)
Q Consensus       521 C~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  554 (693)
                      |+ +.|+..|....... +       ...+.|..|
T Consensus       317 ~~~l~~l~~~~~~~~~~-~-------~~~~~C~~p  343 (353)
T 2z80_A          317 CPRIDYLSRWLNKNSQK-E-------QGSAKCSGS  343 (353)
T ss_dssp             HHHHHHHHHHHHHTTTT-E-------ESCCBBTTT
T ss_pred             CCCcHHHHHHHHhcccc-C-------CCCcccCCC
Confidence            96 77888998774221 1       246678765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.9e-28  Score=256.79  Aligned_cols=273  Identities=18%  Similarity=0.230  Sum_probs=149.9

Q ss_pred             EEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcC
Q psy8029          79 TLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLG  158 (693)
Q Consensus        79 ~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls  158 (693)
                      ..+.+++  .++.++....   ++|++|++++| .++.++...|.++++|++|++++|.++++++..|.++++|++|+++
T Consensus        35 ~c~~~~~--~l~~iP~~~~---~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (353)
T 2z80_A           35 ICKGSSG--SLNSIPSGLT---EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS  108 (353)
T ss_dssp             EEECCST--TCSSCCTTCC---TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EeeCCCC--Cccccccccc---ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence            3455555  5555553222   35666666666 6666665556666666666666666666555555666666666666


Q ss_pred             CCCCCccChhhhCCCCCCCEEEccCCCCCCCCh-hhcCCCCCCcEEECcCC-CCCcCCCCcCCCCCCCcEEEcCCCcccc
Q psy8029         159 SNDVAYMDPEIFKNLTSLRILNLDHNQLINLTR-AIFNNVPNLRSLDISGN-NISILPSGVFSDLRKLQTFYANSNRFQM  236 (693)
Q Consensus       159 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~  236 (693)
                      +|.++++++..|.++++|++|++++|+++.++. ..|..+++|++|++++| .++.+++..|.++++|++|++++|.++.
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence            666666665555666666666666666665554 44555666666666665 3555555555555556666666555555


Q ss_pred             CChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhh
Q psy8029         237 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL  316 (693)
Q Consensus       237 ~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~  316 (693)
                      +.+..|..+++|++|++++|.  +..++...+..+++|+.|++++|.+++++...+..                      
T Consensus       189 ~~~~~l~~l~~L~~L~l~~n~--l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~----------------------  244 (353)
T 2z80_A          189 YEPKSLKSIQNVSHLILHMKQ--HILLLEIFVDVTSSVECLELRDTDLDTFHFSELST----------------------  244 (353)
T ss_dssp             ECTTTTTTCSEEEEEEEECSC--STTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------
T ss_pred             cCHHHHhccccCCeecCCCCc--cccchhhhhhhcccccEEECCCCcccccccccccc----------------------
Confidence            544445555555555555555  33444444444555555555555554433221110                      


Q ss_pred             hcCCCCCcEEEccCCCCCC-----CChhhhccCccCceEeccCCcCccccCc--cCCCCCCeEeCCCCccccc
Q psy8029         317 FRDCKKLVKLELQRNKLKY-----LPENLFESLKELYTLNLKNNQLENITSL--VGLSGLNSLDLSWNQLEQI  382 (693)
Q Consensus       317 ~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~n~l~~~  382 (693)
                      ......++.++++++.++.     +|. .+..+++|+.|++++|+++.+|..  ..+++|++|++++|.+.+.
T Consensus       245 ~~~~~~l~~l~L~~~~l~~~~l~~l~~-~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          245 GETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             --CCCCCCEEEEESCBCCHHHHHHHHH-HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ccccchhhccccccccccCcchhhhHH-HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence            1123445555555555442     222 245566666666666666665553  4566666666666666543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.95  E-value=2.9e-27  Score=239.85  Aligned_cols=217  Identities=26%  Similarity=0.292  Sum_probs=162.0

Q ss_pred             cCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeE
Q psy8029         293 WNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSL  372 (693)
Q Consensus       293 ~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L  372 (693)
                      ..+++++.++++++ .++.+|..++   +++++|++++|.++.++...|..+++|+.|++++|.++.++....+++|++|
T Consensus         7 ~~l~~l~~l~~~~~-~l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L   82 (290)
T 1p9a_G            7 SKVASHLEVNCDKR-NLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL   82 (290)
T ss_dssp             ECSTTCCEEECTTS-CCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred             cccCCccEEECCCC-CCCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence            34455555555555 5555554432   4566667777766666666666677777777777777766666667777777


Q ss_pred             eCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCC
Q psy8029         373 DLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRH  452 (693)
Q Consensus       373 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  452 (693)
                      ++++|.++.++. .+..+++|++|++++|+++..    .+..|..+++|++|++++|+++++++..|..+++|+.|+|++
T Consensus        83 ~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~l----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  157 (290)
T 1p9a_G           83 DLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSL----PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN  157 (290)
T ss_dssp             ECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCC----CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             ECCCCcCCcCch-hhccCCCCCEEECCCCcCccc----CHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence            777777775543 567778888888888888765    245677888888888888888888888788888888888888


Q ss_pred             CCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhc
Q psy8029         453 NNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSK  532 (693)
Q Consensus       453 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~  532 (693)
                      |+|+++++..+..+++|+.|++++|+|+.++...+..               ..++.+++++|||.|+|++.|+.+|++.
T Consensus       158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~---------------~~L~~l~L~~Np~~C~c~~~~l~~wl~~  222 (290)
T 1p9a_G          158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS---------------HLLPFAFLHGNPWLCNCEILYFRRWLQD  222 (290)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------CCCSEEECCSCCBCCSGGGHHHHHHHHH
T ss_pred             CcCCccCHHHhcCcCCCCEEECCCCcCCccChhhccc---------------ccCCeEEeCCCCccCcCccHHHHHHHHh
Confidence            8888888887788888888899888888776544322               3478999999999999999999999987


Q ss_pred             c
Q psy8029         533 K  533 (693)
Q Consensus       533 ~  533 (693)
                      .
T Consensus       223 ~  223 (290)
T 1p9a_G          223 N  223 (290)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=2.3e-27  Score=256.17  Aligned_cols=245  Identities=21%  Similarity=0.392  Sum_probs=130.4

Q ss_pred             cEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccC
Q psy8029         104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH  183 (693)
Q Consensus       104 ~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  183 (693)
                      +.++.++. +++.+|....   ++++.|+|++|.++.++...|.++++|++|+|++|.+..+.+..|.++++|++|+|++
T Consensus        46 ~~v~c~~~-~l~~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           46 SKVICVRK-NLREVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             CEEECCSC-CCSSCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CEEEeCCC-CcCcCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            34444444 4555544321   3455555555555555544455555555555555555555555555555555555555


Q ss_pred             CCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCC-CccccCChhhhhcccCceEEEEecCCCcccc
Q psy8029         184 NQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANS-NRFQMFPKDLFAEMKYLQVIKISYHKDSLKE  262 (693)
Q Consensus       184 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~  262 (693)
                      |+++.+++..|..+++|++|++++|.++.++...|..+++|++|++++ +.+..++...|.++++|++|++++|.  +..
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~--l~~  199 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN--LRE  199 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC--CSS
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc--Ccc
Confidence            555555554455555555555555555555555555555555555554 23334444444445555555555554  334


Q ss_pred             cCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhc
Q psy8029         263 LPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFE  342 (693)
Q Consensus       263 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  342 (693)
                      +|.  +..+++|++|++++|.++.+++..|.++++|+.|++++| .++.++...|.++++|++|++++|+++.++...|.
T Consensus       200 ~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  276 (440)
T 3zyj_A          200 IPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT  276 (440)
T ss_dssp             CCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred             ccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence            432  445555555666555555555555555555555555555 55555555555566666666666666655555555


Q ss_pred             cCccCceEeccCCcC
Q psy8029         343 SLKELYTLNLKNNQL  357 (693)
Q Consensus       343 ~~~~L~~L~Ls~n~l  357 (693)
                      .+++|+.|++++|.+
T Consensus       277 ~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          277 PLHHLERIHLHHNPW  291 (440)
T ss_dssp             SCTTCCEEECCSSCE
T ss_pred             cccCCCEEEcCCCCc
Confidence            555555555555554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=3.6e-27  Score=255.68  Aligned_cols=245  Identities=22%  Similarity=0.391  Sum_probs=126.6

Q ss_pred             cEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccC
Q psy8029         104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH  183 (693)
Q Consensus       104 ~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  183 (693)
                      +.++.++. +++.+|....   +++++|+|++|.++.+++..|.++++|++|+|++|.+.++.+..|.++++|++|+|++
T Consensus        57 ~~v~c~~~-~l~~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           57 SKVVCTRR-GLSEVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             CEEECCSS-CCSSCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             cEEEECCC-CcCccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            34445444 4555544321   3455555555555555444455555555555555555555555555555555555555


Q ss_pred             CCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCC-CccccCChhhhhcccCceEEEEecCCCcccc
Q psy8029         184 NQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANS-NRFQMFPKDLFAEMKYLQVIKISYHKDSLKE  262 (693)
Q Consensus       184 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~  262 (693)
                      |+++.+++..|..+++|++|++++|.++.++...|..+++|+.|++++ +.+..++...|..+++|++|++++|.  +..
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~--l~~  210 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN--IKD  210 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC--CSS
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc--ccc
Confidence            555555555455555555555555555555555555555555555554 33334444444444445555554444  223


Q ss_pred             cCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhc
Q psy8029         263 LPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFE  342 (693)
Q Consensus       263 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  342 (693)
                      ++.  +..+++|++|++++|.++++++..|.++++|+.|++++| .+..++...|.++++|++|++++|.++.++...|.
T Consensus       211 ~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  287 (452)
T 3zyi_A          211 MPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT  287 (452)
T ss_dssp             CCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred             ccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence            332  344555555555555555555555555555555555555 55555444455555555555555555555555555


Q ss_pred             cCccCceEeccCCcC
Q psy8029         343 SLKELYTLNLKNNQL  357 (693)
Q Consensus       343 ~~~~L~~L~Ls~n~l  357 (693)
                      .+++|+.|++++|.+
T Consensus       288 ~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          288 PLRYLVELHLHHNPW  302 (452)
T ss_dssp             TCTTCCEEECCSSCE
T ss_pred             cccCCCEEEccCCCc
Confidence            555555555555543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.95  E-value=2.4e-26  Score=231.01  Aligned_cols=240  Identities=27%  Similarity=0.384  Sum_probs=156.0

Q ss_pred             cEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc--cCCCCCCeEeCCC
Q psy8029         299 TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL--VGLSGLNSLDLSW  376 (693)
Q Consensus       299 ~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~  376 (693)
                      +.++++++ .++.+|..+   .+++++|++++|.++.++...|..+++|++|++++|+++.++..  ..+++|++|++++
T Consensus        19 ~~l~~~~~-~l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           19 NSVDCSSK-KLTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TEEECTTS-CCSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CEEEccCC-CCCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            34444444 444444322   13455555555555555544455555555555555555554443  4455666666666


Q ss_pred             CccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCc
Q psy8029         377 NQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFS  456 (693)
Q Consensus       377 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  456 (693)
                      |.++++.+..|..+++|++|++++|.++..    .+..|..+++|++|++++|.++++++..|..+++|+.|++++|+++
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSL----PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCee----CHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence            666666666666777777777777777654    2445677777888888888877777777777888888888888888


Q ss_pred             cCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCC-cHHHHHHHhcccc
Q psy8029         457 FIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCS-NYDLIRFVSKKMT  535 (693)
Q Consensus       457 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~-~~~~~~~~~~~~~  535 (693)
                      ++++..+..+++|+.|++++|+++.++...+..+              ++++.+++++|||.|+|. ..|+.+|+.....
T Consensus       171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--------------~~L~~L~l~~N~~~c~c~~~~~~~~~l~~~~~  236 (270)
T 2o6q_A          171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL--------------EKLKMLQLQENPWDCTCNGIIYMAKWLKKKAD  236 (270)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC--------------TTCCEEECCSSCBCCSSSSSHHHHHHHHHHHH
T ss_pred             EeChhHhccCCCcCEEECCCCcCCcCCHHHhccc--------------cCCCEEEecCCCeeCCCccHHHHHHHHHhhcc
Confidence            8877777777888888888888887766655544              458899999999999997 7899999876432


Q ss_pred             cceeeeeeeccCceeecCCCCccccccCCCC
Q psy8029         536 KTVYQMLELVTDNLECFGNAGVGINSVRPEN  566 (693)
Q Consensus       536 ~~~~~~~~~~~~~~~c~~~~~~~~~~l~~~~  566 (693)
                      ..+     .......|.. .|..+.++...+
T Consensus       237 ~~~-----~~~~~~~C~~-~~~~~~~~~~~~  261 (270)
T 2o6q_A          237 EGL-----GGVDTAGCEK-GGKAVLEITEKD  261 (270)
T ss_dssp             TTC-----SSTTCCBBSS-SCSBGGGCCTTT
T ss_pred             ccc-----cCccccccCC-CCeEeEEecchh
Confidence            211     1223456754 355566665544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=2.1e-27  Score=243.71  Aligned_cols=229  Identities=22%  Similarity=0.335  Sum_probs=104.5

Q ss_pred             CCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccC--hhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEE
Q psy8029         127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD--PEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLD  204 (693)
Q Consensus       127 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  204 (693)
                      +|++|++++|.++.++..+|.++++|++|++++|.++.+.  +..+..+++|++|++++|.++.++.. +..+++|++|+
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~  107 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLD  107 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE-EETCTTCCEEE
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh-cCCCCCCCEEE
Confidence            3444444444444444443444444444444444443221  12223344444444444444433222 33444444444


Q ss_pred             CcCCCCCcCCC-CcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCC
Q psy8029         205 ISGNNISILPS-GVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS  283 (693)
Q Consensus       205 L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~  283 (693)
                      +++|.++.++. ..+..+++|++|++++|.+..+.+..|..+++|++|++++|.+....++. .|..+++|++|++++|.
T Consensus       108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSC
T ss_pred             CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh-HHhhCcCCCEEECCCCC
Confidence            44444444433 33444444444444444444444333444444444444444421111222 24555555555555555


Q ss_pred             CcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccC-ccCceEeccCCcCc
Q psy8029         284 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESL-KELYTLNLKNNQLE  358 (693)
Q Consensus       284 l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~Ls~n~l~  358 (693)
                      ++++++..|..+++|+.|++++| .++.++...|..+++|++|++++|.++..++..+..+ ++|+.|++++|+++
T Consensus       187 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          187 LEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             cCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            55554444555555555555555 5555554445555555555555555554444334444 25555555555544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=3.7e-27  Score=239.19  Aligned_cols=224  Identities=23%  Similarity=0.379  Sum_probs=163.2

Q ss_pred             cEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccC
Q psy8029         104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH  183 (693)
Q Consensus       104 ~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  183 (693)
                      ++++.+++ +++.+|...   .++|++|++++|.++.+++..|..+++|++|++++|.++++.+..|..+++|++|++++
T Consensus        14 ~~~~c~~~-~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQ-GLQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSS-CCSSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcC-CcccCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            67888888 888887643   46788888888888888877788888888888888888888777788888888888888


Q ss_pred             CC-CCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccc
Q psy8029         184 NQ-LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKE  262 (693)
Q Consensus       184 n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~  262 (693)
                      |+ ++.+.+..|..+++|++|++++|.++.+++..|..+++|++|++++|.++.++...|..+++|++|++++|.  +..
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~  167 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR--ISS  167 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCE
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc--ccc
Confidence            86 777777778888888888888888888877777788888888888888777776666677777777777776  445


Q ss_pred             cCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCC
Q psy8029         263 LPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK  334 (693)
Q Consensus       263 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~  334 (693)
                      ++...|..+++|+.|++++|.+.++.+..|..+++|+.|++++| .++.++...|..+++|++|++++|.+.
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCcc
Confidence            66555666666666666666666655555555555555555555 555555555555555555555555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.95  E-value=2e-26  Score=232.56  Aligned_cols=235  Identities=25%  Similarity=0.316  Sum_probs=186.2

Q ss_pred             EEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCc
Q psy8029         277 VILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ  356 (693)
Q Consensus       277 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~  356 (693)
                      ++..+..+..+|...   .+++++|++++| .++.++...|.++++|++|++++|.++.++...|..+++|++|++++|+
T Consensus        12 ~~c~~~~l~~ip~~l---~~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           12 YQCMELNFYKIPDNL---PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EECTTSCCSSCCSSS---CTTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEecCCCccccCCCC---CCCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            444455555565433   246777777777 7777776667777888888888888877777677778888888888888


Q ss_pred             CccccCc--cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcC
Q psy8029         357 LENITSL--VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL  434 (693)
Q Consensus       357 l~~l~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  434 (693)
                      ++.++..  ..+++|++|++++|.+.++.+..+..+++|++|++++|.++...   .+..+..+++|++|++++|+++++
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceec---CchhhccCCCCCEEECCCCCCCcC
Confidence            8776533  77788888888888888888778888999999999999988542   256788899999999999999998


Q ss_pred             ChhHHhcCCCCc----EEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEE
Q psy8029         435 FDDWISSMTSLK----ELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIV  510 (693)
Q Consensus       435 ~~~~~~~l~~L~----~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l  510 (693)
                      ++..+..+++|+    .|++++|+++++++..+.. .+|+.|++++|+++.++...+..+              ++++.+
T Consensus       165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l--------------~~L~~L  229 (276)
T 2z62_A          165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRL--------------TSLQKI  229 (276)
T ss_dssp             CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTC--------------CSCCEE
T ss_pred             CHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhccc--------------ccccEE
Confidence            888788777777    8999999999998876654 479999999999998877666554              458899


Q ss_pred             EcCCCcccccCC-cHHHHHHHhcc
Q psy8029         511 ILNDNPIACNCS-NYDLIRFVSKK  533 (693)
Q Consensus       511 ~l~~Np~~c~C~-~~~~~~~~~~~  533 (693)
                      ++++|||.|+|+ +.|+..|+...
T Consensus       230 ~l~~N~~~c~c~~l~~l~~~~~~~  253 (276)
T 2z62_A          230 WLHTNPWDCSCPRIDYLSRWLNKN  253 (276)
T ss_dssp             ECCSSCBCCCTTTTHHHHHHHHHT
T ss_pred             EccCCcccccCCchHHHHHHHHhc
Confidence            999999999996 77888998764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=1.2e-25  Score=249.88  Aligned_cols=265  Identities=23%  Similarity=0.235  Sum_probs=140.4

Q ss_pred             cccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEc
Q psy8029         102 FVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNL  181 (693)
Q Consensus       102 ~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  181 (693)
                      ++++|++++| .++.+|...+   ++|++|++++|.++.++.    .+++|++|++++|.++.++.    .+++|++|++
T Consensus        41 ~l~~L~ls~n-~L~~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGES-GLTTLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSS-CCSCCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred             CCcEEEecCC-CcCccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence            4677777777 7777766433   567777777777776665    35677777777777766654    4566777777


Q ss_pred             cCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCccc
Q psy8029         182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLK  261 (693)
Q Consensus       182 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  261 (693)
                      ++|++++++.    .+++|++|++++|.++.++..    +++|++|++++|.++.++.    .+++|+.|++++|.    
T Consensus       109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~----  172 (622)
T 3g06_A          109 FSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQ----  172 (622)
T ss_dssp             CSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSC----
T ss_pred             cCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCC----
Confidence            7776666554    346666666666666665542    3566666666666555442    12344444444444    


Q ss_pred             ccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhh
Q psy8029         262 ELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLF  341 (693)
Q Consensus       262 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  341 (693)
                                            ++.++    ..+++|+.|++++| .++.+|..    .++|+.|++++|.++.++.   
T Consensus       173 ----------------------l~~l~----~~~~~L~~L~Ls~N-~l~~l~~~----~~~L~~L~L~~N~l~~l~~---  218 (622)
T 3g06_A          173 ----------------------LTSLP----MLPSGLQELSVSDN-QLASLPTL----PSELYKLWAYNNRLTSLPA---  218 (622)
T ss_dssp             ----------------------CSCCC----CCCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSSCCC---
T ss_pred             ----------------------CCCCc----ccCCCCcEEECCCC-CCCCCCCc----cchhhEEECcCCcccccCC---
Confidence                                  33333    12233444444444 33333321    2344445555554444442   


Q ss_pred             ccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCC
Q psy8029         342 ESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNL  421 (693)
Q Consensus       342 ~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L  421 (693)
                       .+++|+.|++++|+++++|  ..+++|++|++++|.++.++.    .+++|+.|++++|.++..     +..+..+++|
T Consensus       219 -~~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~l-----p~~l~~l~~L  286 (622)
T 3g06_A          219 -LPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRL-----PESLIHLSSE  286 (622)
T ss_dssp             -CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSC-----CGGGGGSCTT
T ss_pred             -CCCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcC-----CHHHhhcccc
Confidence             1244455555555444444  233445555555555444333    234455555555554422     3334445555


Q ss_pred             cEEECCCCCCCcCChhHHh
Q psy8029         422 ETINLSYNRISSLFDDWIS  440 (693)
Q Consensus       422 ~~L~Ls~n~l~~~~~~~~~  440 (693)
                      +.|+|++|.+++..+..+.
T Consensus       287 ~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          287 TTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             CEEECCSCCCCHHHHHHHH
T ss_pred             CEEEecCCCCCCcCHHHHH
Confidence            5555555555554444433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=2.4e-27  Score=243.64  Aligned_cols=229  Identities=19%  Similarity=0.232  Sum_probs=125.7

Q ss_pred             ccCCCcccccEEEccC-CcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCC
Q psy8029          95 PYFDGLHFVKHILLSH-NKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNL  173 (693)
Q Consensus        95 ~~~~~l~~L~~L~Ls~-n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  173 (693)
                      ..|+++++|++|++++ | .+.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+
T Consensus        70 ~~l~~l~~L~~L~L~~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  148 (313)
T 1ogq_A           70 SSLANLPYLNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL  148 (313)
T ss_dssp             GGGGGCTTCSEEEEEEET-TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred             hhHhCCCCCCeeeCCCCC-cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence            4566666666666663 5 5655444456666666666666666664444445666666666666666665555556666


Q ss_pred             CCCCEEEccCCCCCCCChhhcCCCC-CCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEE
Q psy8029         174 TSLRILNLDHNQLINLTRAIFNNVP-NLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIK  252 (693)
Q Consensus       174 ~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  252 (693)
                      ++|++|++++|++++..+..+..++ +|++|++++|.+++..+..+..++ |++|++++|.++...+..|..+++|++|+
T Consensus       149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  227 (313)
T 1ogq_A          149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIH  227 (313)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred             CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEE
Confidence            6666666666666644444455555 666666666666544444455554 66666666555544444444444555555


Q ss_pred             EecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCC-cCChhhhcCCCCCcEEEccCC
Q psy8029         253 ISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT-SLPSTLFRDCKKLVKLELQRN  331 (693)
Q Consensus       253 l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~-~l~~~~~~~~~~L~~L~l~~n  331 (693)
                      +++|.                          ++..++. +..+++|++|++++| .+. .+|. .|..+++|++|++++|
T Consensus       228 L~~N~--------------------------l~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~p~-~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          228 LAKNS--------------------------LAFDLGK-VGLSKNLNGLDLRNN-RIYGTLPQ-GLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             CCSSE--------------------------ECCBGGG-CCCCTTCCEEECCSS-CCEECCCG-GGGGCTTCCEEECCSS
T ss_pred             CCCCc--------------------------eeeecCc-ccccCCCCEEECcCC-cccCcCCh-HHhcCcCCCEEECcCC
Confidence            54444                          2221111 223344444444444 333 2222 2345556666666666


Q ss_pred             CCC-CCChhhhccCccCceEeccCCc
Q psy8029         332 KLK-YLPENLFESLKELYTLNLKNNQ  356 (693)
Q Consensus       332 ~l~-~~~~~~~~~~~~L~~L~Ls~n~  356 (693)
                      .++ .+|..  ..+++|+.+++++|+
T Consensus       279 ~l~~~ip~~--~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          279 NLCGEIPQG--GNLQRFDVSAYANNK  302 (313)
T ss_dssp             EEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred             cccccCCCC--ccccccChHHhcCCC
Confidence            555 34432  456666666666665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=2.4e-25  Score=247.46  Aligned_cols=265  Identities=26%  Similarity=0.341  Sum_probs=200.3

Q ss_pred             ccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcE
Q psy8029          75 TTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQV  154 (693)
Q Consensus        75 ~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  154 (693)
                      ..++.|+++++  .++.++... .  ++|++|++++| .++.++.    .+++|++|+|++|.++.++.    .+++|++
T Consensus        40 ~~l~~L~ls~n--~L~~lp~~l-~--~~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~  105 (622)
T 3g06_A           40 NGNAVLNVGES--GLTTLPDCL-P--AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLE  105 (622)
T ss_dssp             HCCCEEECCSS--CCSCCCSCC-C--TTCSEEEECSC-CCSCCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCE
T ss_pred             CCCcEEEecCC--CcCccChhh-C--CCCcEEEecCC-CCCCCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCE
Confidence            35899999999  999998533 3  79999999999 9999887    47899999999999998886    5799999


Q ss_pred             EEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcc
Q psy8029         155 LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF  234 (693)
Q Consensus       155 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  234 (693)
                      |++++|.++.++.    .+++|++|++++|+++.++.    .+++|++|++++|.++.++.    .+++|+.|++++|.+
T Consensus       106 L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l  173 (622)
T 3g06_A          106 LSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQL  173 (622)
T ss_dssp             EEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCC
T ss_pred             EECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCC
Confidence            9999999999875    57899999999999998875    35899999999999998875    357899999999999


Q ss_pred             ccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCCh
Q psy8029         235 QMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS  314 (693)
Q Consensus       235 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~  314 (693)
                      +.++    ..+++|+.|++++|.  +..+|..    .++|+.|++++|.++.++.    ..++|+.|++++| .++.+| 
T Consensus       174 ~~l~----~~~~~L~~L~Ls~N~--l~~l~~~----~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N-~L~~lp-  237 (622)
T 3g06_A          174 TSLP----MLPSGLQELSVSDNQ--LASLPTL----PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGN-RLTSLP-  237 (622)
T ss_dssp             SCCC----CCCTTCCEEECCSSC--CSCCCCC----CTTCCEEECCSSCCSSCCC----CCTTCCEEECCSS-CCSCCC-
T ss_pred             CCCc----ccCCCCcEEECCCCC--CCCCCCc----cchhhEEECcCCcccccCC----CCCCCCEEEccCC-ccCcCC-
Confidence            9987    346888889988887  4455542    4677777777777776663    2356666666666 666655 


Q ss_pred             hhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc-cCCCCCCeEeCCCCccccccccccC
Q psy8029         315 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL-VGLSGLNSLDLSWNQLEQINLIAFD  388 (693)
Q Consensus       315 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~  388 (693)
                         ..+++|++|++++|.++.+|.    .+++|+.|++++|+++.+|.. ..+++|+.|+|++|.+++..+..+.
T Consensus       238 ---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          238 ---VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             ---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             ---CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence               234566666666666666554    345566666666666655543 5555666666666666555544443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=2.5e-28  Score=274.71  Aligned_cols=400  Identities=15%  Similarity=0.130  Sum_probs=200.5

Q ss_pred             CCCccEEEEEcCCCCCc--------------cHHHHhhhcCcccccEEEeecCCCCccCCCCccCCC-ccc-ccEEEccC
Q psy8029          47 LGPFNAVTFTFCPLPDE--------------NFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDG-LHF-VKHILLSH  110 (693)
Q Consensus        47 ~~~l~~L~l~~c~l~~~--------------~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~-l~~-L~~L~Ls~  110 (693)
                      ++++++|++++|+....              .+..+..  .++.|++|+++++  .++......+.. +++ |++|++++
T Consensus        72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~L~~L~L~~~--~i~~~~~~~l~~~~~~~L~~L~L~~  147 (592)
T 3ogk_B           72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISN--NLRQLKSVHFRRM--IVSDLDLDRLAKARADDLETLKLDK  147 (592)
T ss_dssp             CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHH--HCTTCCEEEEESC--BCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred             CCCCeEEEecCCcchhhcccccccccccchHHHHHHHh--hCCCCCeEEeecc--EecHHHHHHHHHhccccCcEEECcC
Confidence            46678888877753110              0111111  3566777777776  665433333443 333 77777777


Q ss_pred             CcCccccc-ccccCCCCCCcEEEeeCCcccccCc----ccCCCCCCCcEEEcCCCCCCccCh----hhhCCCCCCCEEEc
Q psy8029         111 NKEITGLH-KDIFKGTPQLESLNLRGNSITELYS----GVFQYVPKLQVLDLGSNDVAYMDP----EIFKNLTSLRILNL  181 (693)
Q Consensus       111 n~~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L  181 (693)
                      |..++... .....++++|++|+|++|.+++...    ..+..+++|++|++++|.++++..    ..+.++++|++|++
T Consensus       148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L  227 (592)
T 3ogk_B          148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV  227 (592)
T ss_dssp             CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEEC
T ss_pred             CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEec
Confidence            73232211 1122356777777777776654321    123456777777777777764332    23346677777777


Q ss_pred             cCCCCCCCChhhcCCCCCCcEEECcCCCCC---cCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCC
Q psy8029         182 DHNQLINLTRAIFNNVPNLRSLDISGNNIS---ILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKD  258 (693)
Q Consensus       182 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~  258 (693)
                      ++|.+.+++ ..+..+++|++|+++.....   ......+..+++|+.|+++++....++. .+..+++|++|++++|.+
T Consensus       228 ~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~Ls~~~l  305 (592)
T 3ogk_B          228 GDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI-LFPFAAQIRKLDLLYALL  305 (592)
T ss_dssp             SSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG-GGGGGGGCCEEEETTCCC
T ss_pred             cCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH-HHhhcCCCcEEecCCCcC
Confidence            777766644 44666777777777653221   1111234556677777776654333332 355666777777776663


Q ss_pred             cccccCccccCCCCCccEEEcCCCCCcc-cCcccccCCCCccEEEecC----------CCCCCcCC-hhhhcCCCCCcEE
Q psy8029         259 SLKELPSGLFANLPLLNTVILGESSIAE-LPSDLFWNSTNITNIVLTG----------HKKLTSLP-STLFRDCKKLVKL  326 (693)
Q Consensus       259 ~~~~i~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~----------n~~l~~l~-~~~~~~~~~L~~L  326 (693)
                      ....+. ..+..+++|+.|+++ +.+.. ....++..+++|++|++++          +..++... ..++..+++|++|
T Consensus       306 ~~~~~~-~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L  383 (592)
T 3ogk_B          306 ETEDHC-TLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM  383 (592)
T ss_dssp             CHHHHH-HHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred             CHHHHH-HHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence            221221 224566667777666 32222 1122234456666666663          32333221 1122345666666


Q ss_pred             EccCCCCCCCChhhhc-cCccCceEecc----CCcCccccC------c-cCCCCCCeEeCCCCc--cccccccccC-CCC
Q psy8029         327 ELQRNKLKYLPENLFE-SLKELYTLNLK----NNQLENITS------L-VGLSGLNSLDLSWNQ--LEQINLIAFD-GLS  391 (693)
Q Consensus       327 ~l~~n~l~~~~~~~~~-~~~~L~~L~Ls----~n~l~~l~~------~-~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~  391 (693)
                      +++.+.++......+. .+++|+.|+++    .|.+++.|.      . .++++|++|++++|.  +++.....+. .++
T Consensus       384 ~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~  463 (592)
T 3ogk_B          384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP  463 (592)
T ss_dssp             EEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT
T ss_pred             EeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc
Confidence            6655555432222222 25566666664    344444321      1 335555555554322  3332222222 244


Q ss_pred             CCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCC-hhHHhcCCCCcEEECCCCCCcc
Q psy8029         392 SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLF-DDWISSMTSLKELDLRHNNFSF  457 (693)
Q Consensus       392 ~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~  457 (693)
                      +|++|++++|.+++..   ....+..+++|++|++++|.+++.. +..+..+++|+.|++++|+++.
T Consensus       464 ~L~~L~L~~n~l~~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          464 NVRWMLLGYVGESDEG---LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             TCCEEEECSCCSSHHH---HHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             cceEeeccCCCCCHHH---HHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            5555555555544321   0112234455555555555544321 2222344555555555555443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=7e-27  Score=240.13  Aligned_cols=251  Identities=22%  Similarity=0.234  Sum_probs=174.5

Q ss_pred             ccccEEEccCCcCccc--ccccccCCCCCCcEEEeeC-CcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCC
Q psy8029         101 HFVKHILLSHNKEITG--LHKDIFKGTPQLESLNLRG-NSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLR  177 (693)
Q Consensus       101 ~~L~~L~Ls~n~~i~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  177 (693)
                      .++++|++++| .+++  ..+..|.++++|++|++++ |.+.+..+..|+++++|++|++++|.+++..+..|.++++|+
T Consensus        50 ~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            35666666666 6664  3334566677777777773 666654344466667777777777666655555566666666


Q ss_pred             EEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCC-CCcEEEcCCCccccCChhhhhcccCceEEEEecC
Q psy8029         178 ILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLR-KLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYH  256 (693)
Q Consensus       178 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  256 (693)
                      +|++++|++++..+..|..+++|++|++++|.+++..+..+..++ +|++|++++|.++..                   
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~-------------------  189 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK-------------------  189 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE-------------------
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc-------------------
Confidence            666666666655555566666666666666666643344444454 555555555554422                   


Q ss_pred             CCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCC
Q psy8029         257 KDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYL  336 (693)
Q Consensus       257 ~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~  336 (693)
                            +|. .|..+. |++|++++|.+++..+..|..+++|+.|++++| .++..++. +..+++|++|++++|.++..
T Consensus       190 ------~~~-~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~  259 (313)
T 1ogq_A          190 ------IPP-TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGK-VGLSKNLNGLDLRNNRIYGT  259 (313)
T ss_dssp             ------CCG-GGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS-EECCBGGG-CCCCTTCCEEECCSSCCEEC
T ss_pred             ------CCh-HHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC-ceeeecCc-ccccCCCCEEECcCCcccCc
Confidence                  222 244444 777888888777777777888999999999999 77655554 67899999999999999844


Q ss_pred             ChhhhccCccCceEeccCCcCcc-ccCccCCCCCCeEeCCCCc-ccc
Q psy8029         337 PENLFESLKELYTLNLKNNQLEN-ITSLVGLSGLNSLDLSWNQ-LEQ  381 (693)
Q Consensus       337 ~~~~~~~~~~L~~L~Ls~n~l~~-l~~~~~l~~L~~L~Ls~n~-l~~  381 (693)
                      .+..|..+++|+.|++++|++++ +|....+++|+.+++++|. +.+
T Consensus       260 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          260 LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred             CChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence            44457899999999999999995 7777889999999999998 444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.8e-27  Score=243.77  Aligned_cols=267  Identities=19%  Similarity=0.221  Sum_probs=199.1

Q ss_pred             CCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcC
Q psy8029         151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYAN  230 (693)
Q Consensus       151 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  230 (693)
                      .++..+++.+.+.......+..+++|++|++++|+++++.+..|..+++|++|++++|.++++++  +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            34556777777777777777888899999999999999888888999999999999998887665  7778888888888


Q ss_pred             CCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCC
Q psy8029         231 SNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT  310 (693)
Q Consensus       231 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~  310 (693)
                      +|.++.++.     .++|++|++++|.                          ++.++..   .+++|+.|++++| .++
T Consensus        89 ~n~l~~l~~-----~~~L~~L~l~~n~--------------------------l~~~~~~---~~~~L~~L~l~~N-~l~  133 (317)
T 3o53_A           89 NNYVQELLV-----GPSIETLHAANNN--------------------------ISRVSCS---RGQGKKNIYLANN-KIT  133 (317)
T ss_dssp             SSEEEEEEE-----CTTCCEEECCSSC--------------------------CSEEEEC---CCSSCEEEECCSS-CCC
T ss_pred             CCccccccC-----CCCcCEEECCCCc--------------------------cCCcCcc---ccCCCCEEECCCC-CCC
Confidence            887765442     2455555555554                          4333322   2344566666666 555


Q ss_pred             cCChhhhcCCCCCcEEEccCCCCCCCChhhh-ccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCC
Q psy8029         311 SLPSTLFRDCKKLVKLELQRNKLKYLPENLF-ESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDG  389 (693)
Q Consensus       311 ~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  389 (693)
                      .+++..|..+++|++|++++|.++.++...+ ..+++|++|++++|+++.++....+++|++|++++|.++++++. |..
T Consensus       134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~  212 (317)
T 3o53_A          134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQS  212 (317)
T ss_dssp             SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGG-GGG
T ss_pred             CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhh-hcc
Confidence            5555555667777777777777776554444 46788888888888888877666788899999999999888765 778


Q ss_pred             CCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCC-cCChhHHhcCCCCcEEECCCC-CCccCCC
Q psy8029         390 LSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS-SLFDDWISSMTSLKELDLRHN-NFSFIPD  460 (693)
Q Consensus       390 l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N-~l~~~~~  460 (693)
                      +++|++|++++|.++..     +..+..+++|+.|++++|.++ +..+.++..+++|+.|+++++ .+++..+
T Consensus       213 l~~L~~L~L~~N~l~~l-----~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          213 AAGVTWISLRNNKLVLI-----EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             GTTCSEEECTTSCCCEE-----CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             cCcccEEECcCCcccch-----hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence            88999999999998854     556778889999999999998 677788888888888888844 4444443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=3.1e-28  Score=274.02  Aligned_cols=374  Identities=18%  Similarity=0.159  Sum_probs=170.8

Q ss_pred             CcccccEEEccCCcCcccccccccCC-CCC-CcEEEeeCCc-cccc-CcccCCCCCCCcEEEcCCCCCCccC----hhhh
Q psy8029          99 GLHFVKHILLSHNKEITGLHKDIFKG-TPQ-LESLNLRGNS-ITEL-YSGVFQYVPKLQVLDLGSNDVAYMD----PEIF  170 (693)
Q Consensus        99 ~l~~L~~L~Ls~n~~i~~~~~~~~~~-l~~-L~~L~L~~n~-i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~  170 (693)
                      .+++|++|+|++| .+++.....+.. ++. |++|++++|. ++.. ......++++|++|+|++|.+++..    +..+
T Consensus       110 ~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~  188 (592)
T 3ogk_B          110 NLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA  188 (592)
T ss_dssp             HCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred             hCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence            4556666666666 555443333333 222 6666666554 1110 0111234566666666666544332    1223


Q ss_pred             CCCCCCCEEEccCCCCCCCCh----hhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccc---cCChhhhh
Q psy8029         171 KNLTSLRILNLDHNQLINLTR----AIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ---MFPKDLFA  243 (693)
Q Consensus       171 ~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~  243 (693)
                      ..+++|++|++++|.++++..    ..+.++++|++|++++|.+.+++ ..+..+++|+.|+++.....   ......+.
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  267 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLV  267 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence            445666666666666553332    22334556666666665555543 33455556666665532111   00111233


Q ss_pred             cccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCc-ccccCCCCccEEEecCCCCCCc-CChhhhcCCC
Q psy8029         244 EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS-DLFWNSTNITNIVLTGHKKLTS-LPSTLFRDCK  321 (693)
Q Consensus       244 ~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~l~~-l~~~~~~~~~  321 (693)
                      .+++|+.++++++.  ...++. .+..+++|++|++++|.++.... ..+..+++|+.|+++++  +.. ....++..++
T Consensus       268 ~~~~L~~L~l~~~~--~~~l~~-~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~  342 (592)
T 3ogk_B          268 FPRKLCRLGLSYMG--PNEMPI-LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCK  342 (592)
T ss_dssp             CCTTCCEEEETTCC--TTTGGG-GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCT
T ss_pred             ccccccccCccccc--hhHHHH-HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc--cCHHHHHHHHHhCC
Confidence            44555555555432  223332 24455566666666555433211 22345556666666522  211 1112223455


Q ss_pred             CCcEEEccC-----------CCCCCCC-hhhhccCccCceEeccCCcCcccc--Cc-cCCCCCCeEeCC----CCccccc
Q psy8029         322 KLVKLELQR-----------NKLKYLP-ENLFESLKELYTLNLKNNQLENIT--SL-VGLSGLNSLDLS----WNQLEQI  382 (693)
Q Consensus       322 ~L~~L~l~~-----------n~l~~~~-~~~~~~~~~L~~L~Ls~n~l~~l~--~~-~~l~~L~~L~Ls----~n~l~~~  382 (693)
                      +|++|++++           +.++... ...+..+++|++|+++.|.+++..  .. ..+++|++|+++    .|.+++.
T Consensus       343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~  422 (592)
T 3ogk_B          343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL  422 (592)
T ss_dssp             TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred             CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence            566666652           2333211 111234555666666555554411  11 235556666664    4444442


Q ss_pred             c-----ccccCCCCCCcEEECCCCc--CcccccccCCCCccCCCCCcEEECCCCCCCcC-ChhHHhcCCCCcEEECCCCC
Q psy8029         383 N-----LIAFDGLSSLNTVDLSHNL--LTFDEYQYGYSPLKQCVNLETINLSYNRISSL-FDDWISSMTSLKELDLRHNN  454 (693)
Q Consensus       383 ~-----~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~  454 (693)
                      +     +..+.++++|++|++++|.  ++....   ......+++|++|++++|++++. .+..+.++++|+.|++++|.
T Consensus       423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~---~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL---SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH---HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred             hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH---HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence            1     1123345556666665332  332210   01112345566666666655542 22333455666666666665


Q ss_pred             CccC-CCcccccCCCccEEECCCCCCcee
Q psy8029         455 FSFI-PDQLDSIVSNKLTLDLSFNQIAIV  482 (693)
Q Consensus       455 l~~~-~~~~~~~l~~L~~L~L~~N~l~~~  482 (693)
                      +++. .+.....+++|+.|++++|+++..
T Consensus       500 l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          500 FSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             CcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            5422 112223455566666666665543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.5e-27  Score=244.11  Aligned_cols=256  Identities=20%  Similarity=0.226  Sum_probs=135.5

Q ss_pred             ccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEcc
Q psy8029         103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD  182 (693)
Q Consensus       103 L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  182 (693)
                      ++..+++.+ .+.......+..+++|++|++++|.++.+++..|..+++|++|++++|.++++.+  +..+++|++|+++
T Consensus        12 l~i~~ls~~-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEESCCTT-THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             eeEeecccc-chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            344445554 4544444444445555555555555555544445555555555555555544433  4555555555555


Q ss_pred             CCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccc
Q psy8029         183 HNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKE  262 (693)
Q Consensus       183 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~  262 (693)
                      +|++++++     ..++|++|++++|.++.++...   +++|++|++++|.++.+++                       
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~-----------------------  137 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRD-----------------------  137 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGG-----------------------
T ss_pred             CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccc-----------------------
Confidence            55544332     1244555555555544443321   3344444444444444433                       


Q ss_pred             cCccccCCCCCccEEEcCCCCCcccCcccc-cCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhh
Q psy8029         263 LPSGLFANLPLLNTVILGESSIAELPSDLF-WNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLF  341 (693)
Q Consensus       263 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  341 (693)
                         ..|..+++|++|++++|.+..++...+ ..+++|++|++++| .++.++...  .+++|++|++++|.++.++.. |
T Consensus       138 ---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~-~  210 (317)
T 3o53_A          138 ---LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV--VFAKLKTLDLSSNKLAFMGPE-F  210 (317)
T ss_dssp             ---BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCC--CCTTCCEEECCSSCCCEECGG-G
T ss_pred             ---hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCccccccc--ccccCCEEECCCCcCCcchhh-h
Confidence               334444555555555555544433322 24555555555555 555554332  366677777777777766655 5


Q ss_pred             ccCccCceEeccCCcCccccCc-cCCCCCCeEeCCCCccc-cccccccCCCCCCcEEECC
Q psy8029         342 ESLKELYTLNLKNNQLENITSL-VGLSGLNSLDLSWNQLE-QINLIAFDGLSSLNTVDLS  399 (693)
Q Consensus       342 ~~~~~L~~L~Ls~n~l~~l~~~-~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~  399 (693)
                      ..+++|+.|++++|+++.+|.. ..+++|++|++++|.+. +..+..+..++.|+.|+++
T Consensus       211 ~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          211 QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             GGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             cccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            6666777777777766666554 55566666666666666 4444555555556655555

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.92  E-value=1.3e-24  Score=210.94  Aligned_cols=197  Identities=20%  Similarity=0.271  Sum_probs=160.2

Q ss_pred             ceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECC
Q psy8029         348 YTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLS  427 (693)
Q Consensus       348 ~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls  427 (693)
                      +.++++++.++.+|... .+++++|++++|.|+++.+..|..+++|++|++++|.++..    .+..|.++++|++|+|+
T Consensus        14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~----~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL----APDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE----CTTTTTTCSSCCEEECC
T ss_pred             CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc----CHHHhhCCcCCCEEECC
Confidence            45667777777766532 25788888888888888888888888888888888888866    36778888889999999


Q ss_pred             CCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccC
Q psy8029         428 YNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSA  507 (693)
Q Consensus       428 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l  507 (693)
                      +|.++.+++..|.++++|+.|+|++|+|+++++..+..+++|+.|+|++|+|+.++...+..+              +++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--------------~~L  154 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL--------------RAI  154 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC--------------TTC
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCC--------------CCC
Confidence            999988888888888999999999999999888888888999999999999998877666554              458


Q ss_pred             cEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCC---CCccccccCCCCCcccCC
Q psy8029         508 NIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINSVRPENLTCDTK  572 (693)
Q Consensus       508 ~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~~~~l~c~~~  572 (693)
                      +.+++++|||.|+|++.|+.+|+....         .....+.|..|   +|..+.+++.+++.|..+
T Consensus       155 ~~L~L~~N~~~c~c~l~~l~~~l~~~~---------~~~~~~~C~~P~~l~g~~l~~l~~~~~~c~~~  213 (220)
T 2v9t_B          155 QTMHLAQNPFICDCHLKWLADYLHTNP---------IETSGARCTSPRRLANKRIGQIKSKKFRCSAA  213 (220)
T ss_dssp             CEEECCSSCEECSGGGHHHHHHHHHCC---------CBCSCCBEEESGGGTTCBGGGSCGGGCCC---
T ss_pred             CEEEeCCCCcCCCCccHHHHHHHHhCC---------CCccCCCcCCchHHcCCchhhCCHHHCcCccc
Confidence            899999999999999999999987642         23356789998   899999999999988765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=1e-23  Score=211.92  Aligned_cols=200  Identities=26%  Similarity=0.441  Sum_probs=109.1

Q ss_pred             ccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEE
Q psy8029          77 INTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD  156 (693)
Q Consensus        77 L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  156 (693)
                      .+.++++++  .++.++.. +.  +++++|++++| .++.+++..|.++++|++|++++|.++.++..+|.++++|++|+
T Consensus        18 ~~~l~~~~~--~l~~ip~~-~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           18 KNSVDCSSK--KLTAIPSN-IP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTEEECTTS--CCSSCCSC-CC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred             CCEEEccCC--CCCccCCC-CC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence            345555555  55555421 11  34555666655 55555555555556666666666555555555555555666666


Q ss_pred             cCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcccc
Q psy8029         157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM  236 (693)
Q Consensus       157 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~  236 (693)
                      +++|.+..+++..|..+++|++|++++|+++.+++..|..+++|++|++++|.++.++...|..+++|+.|++++|.++.
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence            66555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCC
Q psy8029         237 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI  284 (693)
Q Consensus       237 ~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l  284 (693)
                      +++..|..+++|++|++++|.  +..++...|..+++|+.|++++|.+
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          172 VPEGAFDKLTELKTLKLDNNQ--LKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             eChhHhccCCCcCEEECCCCc--CCcCCHHHhccccCCCEEEecCCCe
Confidence            555444445555555555554  3344444444444455555544443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.9e-26  Score=237.02  Aligned_cols=134  Identities=19%  Similarity=0.179  Sum_probs=89.9

Q ss_pred             cCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccc--cCcccC------CCCCCCcEEEcCCCCCCccCh
Q psy8029          96 YFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITE--LYSGVF------QYVPKLQVLDLGSNDVAYMDP  167 (693)
Q Consensus        96 ~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~------~~l~~L~~L~Ls~n~l~~~~~  167 (693)
                      .+.+.++|++|++++| .+ .++......   |++|++++|.++.  ++...+      .++++|++|++++|.+++..+
T Consensus        38 ~~~~~~~L~~l~l~~n-~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  112 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVD-TE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP  112 (312)
T ss_dssp             EEEEEEECTTHHHHCC-TT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred             EEccCCCceeEeeccc-cc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence            3455677888888888 77 666543322   7778888887754  332211      157778888888887775544


Q ss_pred             hhh--CCCCCCCEEEccCCCCCCCChhhcCCC-----CCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccc
Q psy8029         168 EIF--KNLTSLRILNLDHNQLINLTRAIFNNV-----PNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ  235 (693)
Q Consensus       168 ~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  235 (693)
                      ..+  ..+++|++|++++|+++++ +..++.+     ++|++|++++|+++.+++..|..+++|++|++++|.+.
T Consensus       113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  186 (312)
T 1wwl_A          113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL  186 (312)
T ss_dssp             CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred             HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC
Confidence            443  6777788888888777776 3444544     67777777777777777666777777777777777654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=7.3e-24  Score=213.80  Aligned_cols=208  Identities=24%  Similarity=0.321  Sum_probs=119.7

Q ss_pred             ccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEE
Q psy8029         101 HFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILN  180 (693)
Q Consensus       101 ~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  180 (693)
                      ++|++|++++| .++.+++..|.++++|++|++++|.++.+++..|.++++|++|++++|.++++++..|.++++|++|+
T Consensus        28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            35666666666 66666665666666666666666666666665566666666666666666666666666666666666


Q ss_pred             ccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCC-CCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCc
Q psy8029         181 LDHNQLINLTRAIFNNVPNLRSLDISGNNISILP-SGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDS  259 (693)
Q Consensus       181 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~  259 (693)
                      +++|+++++.+..++.+++|++|++++|.++.+. +..+..+++|++|++++|.++.++...|..+++|+          
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----------  176 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP----------  176 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT----------
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc----------
Confidence            6666666655555566666666666666665543 34455556666666666665555544444433333          


Q ss_pred             ccccCccccCCCCCcc-EEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCC
Q psy8029         260 LKELPSGLFANLPLLN-TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK  334 (693)
Q Consensus       260 ~~~i~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~  334 (693)
                                   .+. .+++++|.+..++...|.. .+|+.|++++| .++.++...|..+++|++|++++|.+.
T Consensus       177 -------------~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          177 -------------LLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             -------------TCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             -------------ccceeeecCCCcccccCccccCC-CcccEEECCCC-ceeecCHhHhcccccccEEEccCCccc
Confidence                         111 4445555444444443332 24555555555 455555555555555555555555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=6.2e-24  Score=219.45  Aligned_cols=228  Identities=19%  Similarity=0.247  Sum_probs=143.6

Q ss_pred             CCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccE
Q psy8029         197 VPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNT  276 (693)
Q Consensus       197 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~  276 (693)
                      .+++++|++++|.++.++.. +..+++|++|++++|.++.++.. +..+++|++|++++|.  +..+|.. +..+++|++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~--l~~lp~~-l~~l~~L~~  154 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNP--LRALPAS-IASLNRLRE  154 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCC--CCCCCGG-GGGCTTCCE
T ss_pred             ccceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCc--cccCcHH-HhcCcCCCE
Confidence            35667777777777666554 34466666666666666655433 4556666666666665  3345443 455555555


Q ss_pred             EEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhh--------hcCCCCCcEEEccCCCCCCCChhhhccCccCc
Q psy8029         277 VILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL--------FRDCKKLVKLELQRNKLKYLPENLFESLKELY  348 (693)
Q Consensus       277 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~--------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~  348 (693)
                      |++++|.                        .++.+|..+        |.++++|++|++++|.++.+|.. +..+++|+
T Consensus       155 L~L~~n~------------------------~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~  209 (328)
T 4fcg_A          155 LSIRACP------------------------ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLK  209 (328)
T ss_dssp             EEEEEET------------------------TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG-GGGCTTCC
T ss_pred             EECCCCC------------------------CccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh-hcCCCCCC
Confidence            5555543                        233333221        34577777777777777777654 56777777


Q ss_pred             eEeccCCcCccccCc-cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECC
Q psy8029         349 TLNLKNNQLENITSL-VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLS  427 (693)
Q Consensus       349 ~L~Ls~n~l~~l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls  427 (693)
                      +|++++|++++++.. ..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+.    .+..+..+++|++|+|+
T Consensus       210 ~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~  285 (328)
T 4fcg_A          210 SLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT----LPLDIHRLTQLEKLDLR  285 (328)
T ss_dssp             EEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB----CCTTGGGCTTCCEEECT
T ss_pred             EEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh----cchhhhcCCCCCEEeCC
Confidence            777777777776544 5666777777777777766666677777777777777666544    34556666777777777


Q ss_pred             CCCCCcCChhHHhcCCCCcEEECCCCCCccC
Q psy8029         428 YNRISSLFDDWISSMTSLKELDLRHNNFSFI  458 (693)
Q Consensus       428 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  458 (693)
                      +|.+.+..|..++.+++|+.+++..+.+..+
T Consensus       286 ~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l  316 (328)
T 4fcg_A          286 GCVNLSRLPSLIAQLPANCIILVPPHLQAQL  316 (328)
T ss_dssp             TCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred             CCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence            7766666666667777777776666655544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=1.7e-23  Score=207.70  Aligned_cols=191  Identities=26%  Similarity=0.367  Sum_probs=151.2

Q ss_pred             CCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc--cCCCCCCeEeCCCCccccccccccCCCCCCcEEECC
Q psy8029         322 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL--VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLS  399 (693)
Q Consensus       322 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  399 (693)
                      ..++++++++.++.+|...   .+.++.|++++|+++.++..  ..+++|++|+|++|.++++.+..|..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            3556666666666666543   24667777777777665543  667777777777888877777778888888888888


Q ss_pred             CCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCC
Q psy8029         400 HNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI  479 (693)
Q Consensus       400 ~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  479 (693)
                      +|.++..    .+..|..+++|++|+|++|+++++++..|..+++|+.|+|++|+|+++++..+..+++|+.|++++|++
T Consensus        92 ~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  167 (251)
T 3m19_A           92 NNQLASL----PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL  167 (251)
T ss_dssp             TSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCccccc----ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence            8888755    355677888888888888888888888788888999999999999988887788888899999999999


Q ss_pred             ceeeccchhhhcccCCCCCccccccccCcEEEcCCCccccc-CCcHHHHHHHhcc
Q psy8029         480 AIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACN-CSNYDLIRFVSKK  533 (693)
Q Consensus       480 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~-C~~~~~~~~~~~~  533 (693)
                      +.+++..+..+              ++++.+++++|+|.|+ |++.|+.+|+...
T Consensus       168 ~~~~~~~~~~l--------------~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~  208 (251)
T 3m19_A          168 QSVPHGAFDRL--------------GKLQTITLFGNQFDCSRCEILYLSQWIREN  208 (251)
T ss_dssp             SCCCTTTTTTC--------------TTCCEEECCSCCBCTTSTTHHHHHHHHHHS
T ss_pred             CccCHHHHhCC--------------CCCCEEEeeCCceeCCccccHHHHHHHHhc
Confidence            88877666554              4588999999999999 9999999999865

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=4.5e-26  Score=234.20  Aligned_cols=177  Identities=18%  Similarity=0.158  Sum_probs=130.6

Q ss_pred             CcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCccccc-ccccC-------CCCCCcEEEeeCCcccc-cCc
Q psy8029          73 NITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLH-KDIFK-------GTPQLESLNLRGNSITE-LYS  143 (693)
Q Consensus        73 ~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~-~~~~~-------~l~~L~~L~L~~n~i~~-~~~  143 (693)
                      +.+.|+.++++++  .+ .++ ..+...  |++|++++| .++.+. +..+.       ++++|++|++++|.+++ ++.
T Consensus        41 ~~~~L~~l~l~~n--~l-~~p-~~~~~~--L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           41 GGRSLEYLLKRVD--TE-ADL-GQFTDI--IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEECTTHHHHCC--TT-CCC-HHHHHH--HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             cCCCceeEeeccc--cc-ccH-HHHHHH--Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            3556888888888  77 555 333333  889999999 886532 12122       58899999999999986 555


Q ss_pred             ccC-CCCCCCcEEEcCCCCCCccChhhhCCC-----CCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcC---C
Q psy8029         144 GVF-QYVPKLQVLDLGSNDVAYMDPEIFKNL-----TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISIL---P  214 (693)
Q Consensus       144 ~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~---~  214 (693)
                      ..| ..+++|++|++++|.++++ +..+..+     ++|++|++++|+++++.+..|+.+++|++|++++|++.+.   +
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  192 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI  192 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence            443 8899999999999999988 5666666     8999999999999999988899999999999999987642   1


Q ss_pred             -CCcCCCCCCCcEEEcCCCccccC---ChhhhhcccCceEEEEecCC
Q psy8029         215 -SGVFSDLRKLQTFYANSNRFQMF---PKDLFAEMKYLQVIKISYHK  257 (693)
Q Consensus       215 -~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~  257 (693)
                       ...+..+++|++|++++|.++.+   +...+..+++|++|++++|.
T Consensus       193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~  239 (312)
T 1wwl_A          193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS  239 (312)
T ss_dssp             HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred             HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence             22237788888888888888743   33334445555555555555

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=8.8e-27  Score=262.26  Aligned_cols=373  Identities=16%  Similarity=0.160  Sum_probs=214.4

Q ss_pred             CcccccEEEccCCcCcccccccccC-CCCCCcEEEeeCC-ccccc-CcccCCCCCCCcEEEcCCCCCCccChhhh----C
Q psy8029          99 GLHFVKHILLSHNKEITGLHKDIFK-GTPQLESLNLRGN-SITEL-YSGVFQYVPKLQVLDLGSNDVAYMDPEIF----K  171 (693)
Q Consensus        99 ~l~~L~~L~Ls~n~~i~~~~~~~~~-~l~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~  171 (693)
                      .+++|++|++++| .+++.....+. .+++|++|++++| .++.. ....+.++++|++|++++|.+++..+..+    .
T Consensus       103 ~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          103 SYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             hCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            4566777777776 56554433343 4667777777766 34331 11223356677777777766554443322    2


Q ss_pred             CCCCCCEEEccCCCCCCCChhh----cCCCCCCcEEECcCC-CCCcCCCCcCCCCCCCcEEEcCCCc-------cccCCh
Q psy8029         172 NLTSLRILNLDHNQLINLTRAI----FNNVPNLRSLDISGN-NISILPSGVFSDLRKLQTFYANSNR-------FQMFPK  239 (693)
Q Consensus       172 ~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~  239 (693)
                      .+++|++|++++|. ..+....    +..+++|++|++++| .++. .+..+..+++|+.|+++.+.       +..++.
T Consensus       182 ~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~  259 (594)
T 2p1m_B          182 TYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV  259 (594)
T ss_dssp             TCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred             cCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence            45677777777665 2222222    233567777777766 2223 22234556677777654432       233333


Q ss_pred             hhhhcccCceEE-EEecCCCcccccCccccCCCCCccEEEcCCCCCccc-CcccccCCCCccEEEecCCCCCCcCChhhh
Q psy8029         240 DLFAEMKYLQVI-KISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL-PSDLFWNSTNITNIVLTGHKKLTSLPSTLF  317 (693)
Q Consensus       240 ~~~~~~~~L~~L-~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~  317 (693)
                       .+.++++|+.+ .+....  ...++. .+..+++|++|++++|.++.. ....+..+++|+.|++++| ....-...+.
T Consensus       260 -~l~~~~~L~~Ls~~~~~~--~~~l~~-~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~  334 (594)
T 2p1m_B          260 -ALSGCKELRCLSGFWDAV--PAYLPA-VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLA  334 (594)
T ss_dssp             -HHHTCTTCCEEECCBTCC--GGGGGG-GHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHH
T ss_pred             -HHhcCCCcccccCCcccc--hhhHHH-HHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHH
Confidence             35677777777 333222  222322 133567788888877775532 1223456778888888776 1111111223


Q ss_pred             cCCCCCcEEEccC---------CCCCCCChh-hhccCccCceEeccCCcCcccc--Cc-cCCCCCCeEeCC--C----Cc
Q psy8029         318 RDCKKLVKLELQR---------NKLKYLPEN-LFESLKELYTLNLKNNQLENIT--SL-VGLSGLNSLDLS--W----NQ  378 (693)
Q Consensus       318 ~~~~~L~~L~l~~---------n~l~~~~~~-~~~~~~~L~~L~Ls~n~l~~l~--~~-~~l~~L~~L~Ls--~----n~  378 (693)
                      ..+++|++|++.+         +.++..... ....+++|+.|.++.|.++...  .. ..+++|++|+++  +    +.
T Consensus       335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~  414 (594)
T 2p1m_B          335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY  414 (594)
T ss_dssp             HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred             HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence            3577788888743         233321111 1234778888877777776522  22 357788888887  3    45


Q ss_pred             cccccc-----cccCCCCCCcEEECCCCcCcccccccCCCCcc-CCCCCcEEECCCCCCCcCChhHH-hcCCCCcEEECC
Q psy8029         379 LEQINL-----IAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLK-QCVNLETINLSYNRISSLFDDWI-SSMTSLKELDLR  451 (693)
Q Consensus       379 l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~  451 (693)
                      +++...     ..+..+++|+.|++++ .++...    ...+. .+++|++|++++|.+++.....+ .++++|+.|+++
T Consensus       415 l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~----~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~  489 (594)
T 2p1m_B          415 LTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKV----FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR  489 (594)
T ss_dssp             TTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHH----HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEE
T ss_pred             ccCCchhhHHHHHHhhCCCccEEeecC-cccHHH----HHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECc
Confidence            553221     1255678888888876 555432    12222 37789999999998876655545 678899999999


Q ss_pred             CCCCccCCCc-ccccCCCccEEECCCCCCceeec
Q psy8029         452 HNNFSFIPDQ-LDSIVSNKLTLDLSFNQIAIVDL  484 (693)
Q Consensus       452 ~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~  484 (693)
                      +|.+++.... ....+++|+.|++++|+++....
T Consensus       490 ~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  523 (594)
T 2p1m_B          490 DCPFGDKALLANASKLETMRSLWMSSCSVSFGAC  523 (594)
T ss_dssp             SCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHH
T ss_pred             CCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHH
Confidence            9988643332 23457888999999998854433

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.91  E-value=2.9e-23  Score=201.29  Aligned_cols=196  Identities=26%  Similarity=0.303  Sum_probs=159.2

Q ss_pred             ceEeccCCcCccccCccCCCCCCeEeCCCCccccccc-cccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEEC
Q psy8029         348 YTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINL-IAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL  426 (693)
Q Consensus       348 ~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~L  426 (693)
                      +.+++++|.++.+|.. -...+++|++++|.++++.+ ..|..+++|++|++++|.++..    .+..|..+++|++|+|
T Consensus        14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i----~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI----EEGAFEGASGVNEILL   88 (220)
T ss_dssp             TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEEC
T ss_pred             CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE----CHHHhCCCCCCCEEEC
Confidence            4666777777666653 23356788888888887743 5678888889999988888866    3567888899999999


Q ss_pred             CCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCcccccccc
Q psy8029         427 SYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARS  506 (693)
Q Consensus       427 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~  506 (693)
                      ++|.++++++..|..+++|++|+|++|+|+++++..+..+++|+.|+|++|+|+++.+..+..+              ++
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--------------~~  154 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL--------------HS  154 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTC--------------TT
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCC--------------CC
Confidence            9999999999889999999999999999999988888899999999999999999887777655              45


Q ss_pred             CcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCC---CCccccccCCCCCcccC
Q psy8029         507 ANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINSVRPENLTCDT  571 (693)
Q Consensus       507 l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~~~~l~c~~  571 (693)
                      ++.+++++|||.|+|++.|+..|+....         ....+..|..|   +|..+.+++...+.|..
T Consensus       155 L~~L~L~~N~l~c~c~l~~l~~~~~~~~---------~~~~~~~C~~P~~l~g~~l~~l~~~~~~~~~  213 (220)
T 2v70_A          155 LSTLNLLANPFNCNCYLAWLGEWLRKKR---------IVTGNPRCQKPYFLKEIPIQDVAIQDFTCDD  213 (220)
T ss_dssp             CCEEECCSCCEECSGGGHHHHHHHHHSC---------CBCCCCEEEESGGGTTEEGGGSCGGGCCCCC
T ss_pred             CCEEEecCcCCcCCCchHHHHHHHHhcC---------ccccCCccCCChHHCCCChhhCCHHHccccc
Confidence            8899999999999999999999997541         22345689988   88889999887776653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=1.3e-26  Score=260.94  Aligned_cols=402  Identities=16%  Similarity=0.157  Sum_probs=275.6

Q ss_pred             cCCCcccccEEEccCCcCccccc--------------ccccCCCCCCcEEEeeCCcccccCcccCC-CCCCCcEEEcCCC
Q psy8029          96 YFDGLHFVKHILLSHNKEITGLH--------------KDIFKGTPQLESLNLRGNSITELYSGVFQ-YVPKLQVLDLGSN  160 (693)
Q Consensus        96 ~~~~l~~L~~L~Ls~n~~i~~~~--------------~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n  160 (693)
                      .+.++++|++|+++++..+.++.              ...+..+++|++|++++|.++......+. .+++|++|++++|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            45566777777777763343321              12234678999999999988764333343 6899999999999


Q ss_pred             -CCCcc-ChhhhCCCCCCCEEEccCCCCCCCChhhc----CCCCCCcEEECcCCCCCcCCCCc----CCCCCCCcEEEcC
Q psy8029         161 -DVAYM-DPEIFKNLTSLRILNLDHNQLINLTRAIF----NNVPNLRSLDISGNNISILPSGV----FSDLRKLQTFYAN  230 (693)
Q Consensus       161 -~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~l~  230 (693)
                       .+... .+..+.++++|++|++++|.+++.....+    ..+++|++|++++|. ..+....    ...+++|++|+++
T Consensus       141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~  219 (594)
T 2p1m_B          141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLN  219 (594)
T ss_dssp             EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECC
T ss_pred             CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecC
Confidence             55542 23344579999999999999876554333    367899999999997 3333222    2447999999999


Q ss_pred             CC-ccccCChhhhhcccCceEEEEecCCCc-----ccccCccccCCCCCccEE-EcCCCCCcccCcccccCCCCccEEEe
Q psy8029         231 SN-RFQMFPKDLFAEMKYLQVIKISYHKDS-----LKELPSGLFANLPLLNTV-ILGESSIAELPSDLFWNSTNITNIVL  303 (693)
Q Consensus       231 ~n-~l~~~~~~~~~~~~~L~~L~l~~n~~~-----~~~i~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~~~L~~L~l  303 (693)
                      +| .+.. .+..+..+++|++|+++.+...     ...++. .+.++++|+.+ .+.+.....++ ..+..+++|+.|++
T Consensus       220 ~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~l~~~~~L~~Ls~~~~~~~~~l~-~~~~~~~~L~~L~L  296 (594)
T 2p1m_B          220 RAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV-ALSGCKELRCLSGFWDAVPAYLP-AVYSVCSRLTTLNL  296 (594)
T ss_dssp             TTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH-HHHTCTTCCEEECCBTCCGGGGG-GGHHHHTTCCEEEC
T ss_pred             CCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHH-HHhcCCCcccccCCcccchhhHH-HHHHhhCCCCEEEc
Confidence            98 4445 3445778999999997765310     122333 36789999999 44443333333 23346789999999


Q ss_pred             cCCCCCCcC-ChhhhcCCCCCcEEEccCCCCCC-CChhhhccCccCceEeccC---------CcCcc--ccCc-cCCCCC
Q psy8029         304 TGHKKLTSL-PSTLFRDCKKLVKLELQRNKLKY-LPENLFESLKELYTLNLKN---------NQLEN--ITSL-VGLSGL  369 (693)
Q Consensus       304 ~~n~~l~~l-~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~Ls~---------n~l~~--l~~~-~~l~~L  369 (693)
                      ++| .++.. ...++..+++|++|++++| ++. ........+++|+.|++++         +.+++  +... .++++|
T Consensus       297 ~~~-~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L  374 (594)
T 2p1m_B          297 SYA-TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKL  374 (594)
T ss_dssp             TTC-CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTC
T ss_pred             cCC-CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhH
Confidence            999 45532 2333568999999999998 431 1122234689999999943         44443  2222 458999


Q ss_pred             CeEeCCCCccccccccccC-CCCCCcEEECC--C----CcCcccccc-cCCCCccCCCCCcEEECCCCCCCcCChhHHhc
Q psy8029         370 NSLDLSWNQLEQINLIAFD-GLSSLNTVDLS--H----NLLTFDEYQ-YGYSPLKQCVNLETINLSYNRISSLFDDWISS  441 (693)
Q Consensus       370 ~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  441 (693)
                      ++|.++.|.+++.....+. .+++|+.|+++  +    +.++..... .....+..+++|++|++++ .+++.....+..
T Consensus       375 ~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~  453 (594)
T 2p1m_B          375 ESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT  453 (594)
T ss_dssp             CEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH
T ss_pred             HHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH
Confidence            9999999999877666665 58999999999  4    555522100 0011256789999999988 777666555665


Q ss_pred             -CCCCcEEECCCCCCccCCCccc-ccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcc
Q psy8029         442 -MTSLKELDLRHNNFSFIPDQLD-SIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPI  517 (693)
Q Consensus       442 -l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~  517 (693)
                       +++|+.|++++|.+++.....+ ..+++|+.|++++|+++......+...             .++|+.|++++|++
T Consensus       454 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~-------------l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          454 YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASK-------------LETMRSLWMSSCSV  518 (594)
T ss_dssp             HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGG-------------GGGSSEEEEESSCC
T ss_pred             hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHh-------------CCCCCEEeeeCCCC
Confidence             9999999999999976544333 568999999999999965433322210             14689999999987

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=4.6e-23  Score=212.95  Aligned_cols=229  Identities=19%  Similarity=0.190  Sum_probs=191.8

Q ss_pred             ccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCc
Q psy8029         245 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV  324 (693)
Q Consensus       245 ~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~  324 (693)
                      .++++.|++++|.  +..+|.. +..+++|++|++++|.+..+|. .+..+++|++|++++| .++.+|.. |..+++|+
T Consensus        80 ~~~l~~L~L~~n~--l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~L~  153 (328)
T 4fcg_A           80 QPGRVALELRSVP--LPQFPDQ-AFRLSHLQHMTIDAAGLMELPD-TMQQFAGLETLTLARN-PLRALPAS-IASLNRLR  153 (328)
T ss_dssp             STTCCEEEEESSC--CSSCCSC-GGGGTTCSEEEEESSCCCCCCS-CGGGGTTCSEEEEESC-CCCCCCGG-GGGCTTCC
T ss_pred             ccceeEEEccCCC--chhcChh-hhhCCCCCEEECCCCCccchhH-HHhccCCCCEEECCCC-ccccCcHH-HhcCcCCC
Confidence            4678888888887  4577776 4558888888888888887764 4578889999999999 88888876 57899999


Q ss_pred             EEEccCCCC-CCCChhh--------hccCccCceEeccCCcCccccCc-cCCCCCCeEeCCCCccccccccccCCCCCCc
Q psy8029         325 KLELQRNKL-KYLPENL--------FESLKELYTLNLKNNQLENITSL-VGLSGLNSLDLSWNQLEQINLIAFDGLSSLN  394 (693)
Q Consensus       325 ~L~l~~n~l-~~~~~~~--------~~~~~~L~~L~Ls~n~l~~l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  394 (693)
                      +|++++|.+ ..+|...        |..+++|++|++++|+++.+|.. ..+++|++|++++|.++++.+ .+..+++|+
T Consensus       154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~  232 (328)
T 4fcg_A          154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLE  232 (328)
T ss_dssp             EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCC
T ss_pred             EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCch-hhccCCCCC
Confidence            999999754 4566543        34599999999999999988876 889999999999999998766 688899999


Q ss_pred             EEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEEC
Q psy8029         395 TVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDL  474 (693)
Q Consensus       395 ~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  474 (693)
                      +|++++|.+.+.    .+..+..+++|++|++++|.+.+..|..+..+++|+.|+|++|++.+..+..+..+++++.+++
T Consensus       233 ~L~Ls~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l  308 (328)
T 4fcg_A          233 ELDLRGCTALRN----YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV  308 (328)
T ss_dssp             EEECTTCTTCCB----CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred             EEECcCCcchhh----hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence            999999998866    4677899999999999999999888888999999999999999999888888999999999999


Q ss_pred             CCCCCceeec
Q psy8029         475 SFNQIAIVDL  484 (693)
Q Consensus       475 ~~N~l~~~~~  484 (693)
                      ..|.+..+..
T Consensus       309 ~~~~~~~l~~  318 (328)
T 4fcg_A          309 PPHLQAQLDQ  318 (328)
T ss_dssp             CGGGSCC---
T ss_pred             CHHHHHHHhh
Confidence            9888776543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=1.5e-24  Score=236.42  Aligned_cols=236  Identities=22%  Similarity=0.247  Sum_probs=168.0

Q ss_pred             CCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEE
Q psy8029         173 LTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIK  252 (693)
Q Consensus       173 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  252 (693)
                      +++|++|+|++|.++++++..|+.+++|++|+|++|.++++++  +..+++|++|++++|.++.++.     .++|++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            3478888888888888887778888888888888888876655  6777788888888777665442     14455555


Q ss_pred             EecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCC
Q psy8029         253 ISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNK  332 (693)
Q Consensus       253 l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~  332 (693)
                      +++|                          .++.++..   .+++|+.|++++| .++.+++..|..+++|++|++++|.
T Consensus       106 L~~N--------------------------~l~~~~~~---~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~  155 (487)
T 3oja_A          106 AANN--------------------------NISRVSCS---RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE  155 (487)
T ss_dssp             CCSS--------------------------CCCCEEEC---CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSC
T ss_pred             CcCC--------------------------cCCCCCcc---ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCC
Confidence            5554                          44443322   2345566666666 5555555455667777777777777


Q ss_pred             CCCCChhhhc-cCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccC
Q psy8029         333 LKYLPENLFE-SLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYG  411 (693)
Q Consensus       333 l~~~~~~~~~-~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  411 (693)
                      ++.+++..|. .+++|+.|+|++|.+++++....+++|++|+|++|.++++++. |..+++|+.|++++|.+++.     
T Consensus       156 l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~l-----  229 (487)
T 3oja_A          156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-----  229 (487)
T ss_dssp             CCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-----
T ss_pred             CCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCccc-----
Confidence            7765444443 6778888888888888777666788888888888888887764 77788888888888888864     


Q ss_pred             CCCccCCCCCcEEECCCCCCC-cCChhHHhcCCCCcEEECC
Q psy8029         412 YSPLKQCVNLETINLSYNRIS-SLFDDWISSMTSLKELDLR  451 (693)
Q Consensus       412 ~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~  451 (693)
                      +..+..+++|+.|++++|.+. +..|.++..++.|+.++++
T Consensus       230 p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            455777788888888888887 5556667777777777664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.90  E-value=1.8e-23  Score=206.13  Aligned_cols=207  Identities=16%  Similarity=0.310  Sum_probs=131.9

Q ss_pred             CccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCc-ccccCcccCCCCCCCcEEEcCC-CCCCcc
Q psy8029          88 NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNS-ITELYSGVFQYVPKLQVLDLGS-NDVAYM  165 (693)
Q Consensus        88 ~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~  165 (693)
                      .++.++.  +.  ++|++|++++| +++.+++..|.++++|++|++++|+ ++.+++.+|.++++|++|++++ |.++.+
T Consensus        22 ~l~~ip~--~~--~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i   96 (239)
T 2xwt_C           22 DIQRIPS--LP--PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI   96 (239)
T ss_dssp             SCSSCCC--CC--TTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred             CccccCC--CC--CcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence            3555553  22  36777777777 7777777677777777777777775 7777766677777777777776 777777


Q ss_pred             ChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCc---EEECcCC-CCCcCCCCcCCCCCCCc-EEEcCCCccccCChh
Q psy8029         166 DPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLR---SLDISGN-NISILPSGVFSDLRKLQ-TFYANSNRFQMFPKD  240 (693)
Q Consensus       166 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~i~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~  240 (693)
                      ++..|.++++|++|++++|++++++.  |..+++|+   +|++++| .++.+++..|.++++|+ .|++++|.++.++..
T Consensus        97 ~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~  174 (239)
T 2xwt_C           97 DPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY  174 (239)
T ss_dssp             CTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTT
T ss_pred             CHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHh
Confidence            76667777777777777777776554  56666666   7777777 67766666666666676 677766666666655


Q ss_pred             hhhcccCceEEEEecCCCcccccCccccCCC-CCccEEEcCCCCCcccCcccccCCCCccEEEecCC
Q psy8029         241 LFAEMKYLQVIKISYHKDSLKELPSGLFANL-PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGH  306 (693)
Q Consensus       241 ~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  306 (693)
                      .|.. ++|++|++++|+. ++.++...|..+ ++|+.|++++|.++.++..   .+++|+.|+++++
T Consensus       175 ~~~~-~~L~~L~L~~n~~-l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          175 AFNG-TKLDAVYLNKNKY-LTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             TTTT-CEEEEEECTTCTT-CCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             hcCC-CCCCEEEcCCCCC-cccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            5544 5566666655520 234444445555 5555555555555555443   2344445554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=5.3e-24  Score=231.98  Aligned_cols=236  Identities=19%  Similarity=0.230  Sum_probs=132.1

Q ss_pred             cccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEE
Q psy8029         100 LHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRIL  179 (693)
Q Consensus       100 l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  179 (693)
                      +++|++|+|++| .++++++..|..+++|++|+|++|.++++++  |..+++|++|++++|.++++++     .++|++|
T Consensus        33 ~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L  104 (487)
T 3oja_A           33 AWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL  104 (487)
T ss_dssp             GGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred             CCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence            345666666666 6666555556666666666666666655443  5556666666666665554432     1556666


Q ss_pred             EccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhh-cccCceEEEEecCCC
Q psy8029         180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFA-EMKYLQVIKISYHKD  258 (693)
Q Consensus       180 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~~  258 (693)
                      ++++|.++++++.   .+++|++|++++|.++++++..+..+++|+.|++++|.++.+++..+. .+++|++|++++|. 
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-  180 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-  180 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-
Confidence            6666666555432   345566666666666665555555566666666666666654443333 45566666666665 


Q ss_pred             cccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCC-CCC
Q psy8029         259 SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK-YLP  337 (693)
Q Consensus       259 ~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~-~~~  337 (693)
                       +..++.  +..+++|+.|++++|.++++++. |..+++|+.|++++| .+..+|.. +..+++|+.|++++|.+. ...
T Consensus       181 -l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N-~l~~lp~~-l~~l~~L~~L~l~~N~l~c~~~  254 (487)
T 3oja_A          181 -IYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNN-KLVLIEKA-LRFSQNLEHFDLRGNGFHCGTL  254 (487)
T ss_dssp             -CCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTS-CCCEECTT-CCCCTTCCEEECTTCCBCHHHH
T ss_pred             -cccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCC-cCcccchh-hccCCCCCEEEcCCCCCcCcch
Confidence             323333  22456666666666666666554 455566666666666 55555554 345566666666666655 222


Q ss_pred             hhhhccCccCceEecc
Q psy8029         338 ENLFESLKELYTLNLK  353 (693)
Q Consensus       338 ~~~~~~~~~L~~L~Ls  353 (693)
                      +..+..++.|+.++++
T Consensus       255 ~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          255 RDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHHHTTCHHHHHHHHH
T ss_pred             HHHHHhCCCCcEEecc
Confidence            2234445555555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.90  E-value=4e-23  Score=203.54  Aligned_cols=191  Identities=15%  Similarity=0.309  Sum_probs=124.1

Q ss_pred             CcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCC-CCccChhhhCCCCCCCEEEccC-CCCCCCC
Q psy8029         113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSND-VAYMDPEIFKNLTSLRILNLDH-NQLINLT  190 (693)
Q Consensus       113 ~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~  190 (693)
                      +++.+|.  +.  ++|++|++++|+++++++..|.++++|++|++++|. ++.+++.+|.++++|++|++++ |+++.++
T Consensus        22 ~l~~ip~--~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~   97 (239)
T 2xwt_C           22 DIQRIPS--LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID   97 (239)
T ss_dssp             SCSSCCC--CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred             CccccCC--CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence            4666665  32  378888888888888887778888888888888886 7788777778888888888887 7888777


Q ss_pred             hhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCc---EEEcCCC-ccccCChhhhhcccCce-EEEEecCCCcccccCc
Q psy8029         191 RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQ---TFYANSN-RFQMFPKDLFAEMKYLQ-VIKISYHKDSLKELPS  265 (693)
Q Consensus       191 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~L~-~L~l~~n~~~~~~i~~  265 (693)
                      +..|.++++|++|++++|.++.++.  |..+++|+   +|++++| .++.+++..|..+++|+ +|++++|.  +..++.
T Consensus        98 ~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~--l~~i~~  173 (239)
T 2xwt_C           98 PDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG--FTSVQG  173 (239)
T ss_dssp             TTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC--CCEECT
T ss_pred             HHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC--CcccCH
Confidence            7777778888888888887777665  66666666   6666666 66666655555555555 55555555  334554


Q ss_pred             cccCCCCCccEEEcCCCC-CcccCcccccCC-CCccEEEecCCCCCCcCC
Q psy8029         266 GLFANLPLLNTVILGESS-IAELPSDLFWNS-TNITNIVLTGHKKLTSLP  313 (693)
Q Consensus       266 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~-~~L~~L~l~~n~~l~~l~  313 (693)
                      ..|.. ++|+.|++++|. ++.++...|.++ ++|+.|++++| .++.+|
T Consensus       174 ~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~  221 (239)
T 2xwt_C          174 YAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALP  221 (239)
T ss_dssp             TTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCC
T ss_pred             hhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCC
Confidence            44443 445555555542 444444444444 44444444444 343433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=2.3e-22  Score=202.15  Aligned_cols=194  Identities=26%  Similarity=0.336  Sum_probs=164.4

Q ss_pred             cCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEE
Q psy8029         318 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVD  397 (693)
Q Consensus       318 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  397 (693)
                      ..+++|++|++++|.++.++.  +..+++|++|++++|.+++++....+++|++|++++|.++++.+..|..+++|++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            456778888888888877765  677888888888888888887678888999999999999998888889999999999


Q ss_pred             CCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCC
Q psy8029         398 LSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFN  477 (693)
Q Consensus       398 L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  477 (693)
                      +++|.++..    .+..+..+++|++|++++|.++++++..+..+++|+.|++++|+++++++..+..+++|+.|++++|
T Consensus       116 L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          116 LVENQLQSL----PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             CTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCcCCcc----CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence            999999865    3556788999999999999999998888889999999999999999998888888999999999999


Q ss_pred             CCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCC-cHHHHHHHh
Q psy8029         478 QIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCS-NYDLIRFVS  531 (693)
Q Consensus       478 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~-~~~~~~~~~  531 (693)
                      +++++++..+..+              ++++.+++++|||.|+|+ +.++..|..
T Consensus       192 ~l~~~~~~~~~~l--------------~~L~~L~l~~N~~~~~~~~l~~l~~~~n  232 (272)
T 3rfs_A          192 QLKSVPDGVFDRL--------------TSLQYIWLHDNPWDCTCPGIRYLSEWIN  232 (272)
T ss_dssp             CCSCCCTTTTTTC--------------TTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred             cCCccCHHHHhCC--------------cCCCEEEccCCCccccCcHHHHHHHHHH
Confidence            9998877666554              458899999999999997 445555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=2e-22  Score=204.22  Aligned_cols=204  Identities=25%  Similarity=0.273  Sum_probs=180.2

Q ss_pred             ccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCcc
Q psy8029         267 LFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKE  346 (693)
Q Consensus       267 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  346 (693)
                      .++.++++++++++++.++.+|..++   ++++.|++++| .++.++...|..+++|++|++++|.++.++..  ..+++
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~   78 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPV   78 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTT
T ss_pred             cccccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCc
Confidence            35677888999999988888887653   67889999999 88888877888999999999999999887763  67899


Q ss_pred             CceEeccCCcCccccCc-cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEE
Q psy8029         347 LYTLNLKNNQLENITSL-VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETIN  425 (693)
Q Consensus       347 L~~L~Ls~n~l~~l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~  425 (693)
                      |++|++++|+++.+|.. ..+++|++|++++|+++++.+..|.++++|++|++++|.++..    .+..|..+++|+.|+
T Consensus        79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~  154 (290)
T 1p9a_G           79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL----PPGLLTPTPKLEKLS  154 (290)
T ss_dssp             CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEE
T ss_pred             CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc----ChhhcccccCCCEEE
Confidence            99999999999998876 7889999999999999999999999999999999999999966    356688899999999


Q ss_pred             CCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCce
Q psy8029         426 LSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAI  481 (693)
Q Consensus       426 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  481 (693)
                      |++|+++++++..|..+++|+.|+|++|+|+.++...+ ....|+.|++++|++..
T Consensus       155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          155 LANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCBCC
T ss_pred             CCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhc-ccccCCeEEeCCCCccC
Confidence            99999999999888999999999999999999887744 56689999999999975

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.89  E-value=4.8e-23  Score=215.14  Aligned_cols=242  Identities=22%  Similarity=0.353  Sum_probs=148.9

Q ss_pred             cEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCC-ccChhhhCCCCCCCE-EEc
Q psy8029         104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVA-YMDPEIFKNLTSLRI-LNL  181 (693)
Q Consensus       104 ~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~-L~L  181 (693)
                      ++++.+++ +++.+|.+.   .+++++|+|++|+|+.+++++|.++++|++|+|++|.+. .+++.+|.+++++++ +.+
T Consensus        12 ~~v~C~~~-~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQES-KVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEEST-TCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCC-CCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            34556666 666666543   235666666666666666666666666666666666543 344455555555543 333


Q ss_pred             cCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCccc
Q psy8029         182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLK  261 (693)
Q Consensus       182 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  261 (693)
                      ++|+++.+.+..|..+++|++|++++|.++.+++..                        +....++..+++.++.. +.
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~------------------------~~~~~~l~~l~l~~~~~-i~  142 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH------------------------KIHSLQKVLLDIQDNIN-IH  142 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCT------------------------TCCBSSCEEEEEESCTT-CC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchh------------------------hcccchhhhhhhccccc-cc
Confidence            445555555555555555555555555555444433                        33444455555544221 34


Q ss_pred             ccCccccCCCC-CccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhh
Q psy8029         262 ELPSGLFANLP-LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENL  340 (693)
Q Consensus       262 ~i~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~  340 (693)
                      .++...|..+. .++.|++++|.++.++..+|.. .+++.+++.++..++.+|..+|.++++|++|++++|+++.+|...
T Consensus       143 ~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~  221 (350)
T 4ay9_X          143 TIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG  221 (350)
T ss_dssp             EECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS
T ss_pred             cccccchhhcchhhhhhccccccccCCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh
Confidence            55555555553 5777888888888887777643 578888887655888888888888899999999999998888766


Q ss_pred             hccCccCceEeccCCcCccccCccCCCCCCeEeCCCC
Q psy8029         341 FESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWN  377 (693)
Q Consensus       341 ~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n  377 (693)
                      |.++++|+.+++  +.++.+|....+++|+.++++++
T Consensus       222 ~~~L~~L~~l~~--~~l~~lP~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          222 LENLKKLRARST--YNLKKLPTLEKLVALMEASLTYP  256 (350)
T ss_dssp             CTTCCEEECTTC--TTCCCCCCTTTCCSCCEEECSCH
T ss_pred             hccchHhhhccC--CCcCcCCCchhCcChhhCcCCCC
Confidence            555444444332  34666776667777777777654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=8.1e-23  Score=209.72  Aligned_cols=229  Identities=16%  Similarity=0.157  Sum_probs=181.3

Q ss_pred             CCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccC--CCcccccEEEccCCcCccccc----ccc
Q psy8029          48 GPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYF--DGLHFVKHILLSHNKEITGLH----KDI  121 (693)
Q Consensus        48 ~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~--~~l~~L~~L~Ls~n~~i~~~~----~~~  121 (693)
                      ..++.+.+.++.+.+..+..+......+.|++|++++|  .++...+..+  ..+++|++|++++| .++...    ...
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~  140 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDL--KITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQ  140 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESC--CCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHH
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCC--EeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHH
Confidence            46789999999998888888877777888999999999  8887776777  89999999999999 888632    234


Q ss_pred             cCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCc---cCh-hhhCCCCCCCEEEccCCCCCCCChh---hc
Q psy8029         122 FKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAY---MDP-EIFKNLTSLRILNLDHNQLINLTRA---IF  194 (693)
Q Consensus       122 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~  194 (693)
                      +..+++|++|++++|.++.+++..|+.+++|++|++++|.+.+   +.+ ..+..+++|++|++++|+++.++..   .+
T Consensus       141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~  220 (310)
T 4glp_A          141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA  220 (310)
T ss_dssp             TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred             hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence            5678999999999999999988889999999999999998764   222 2346889999999999999865442   35


Q ss_pred             CCCCCCcEEECcCCCCCcCCCCcCCCC---CCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCC
Q psy8029         195 NNVPNLRSLDISGNNISILPSGVFSDL---RKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANL  271 (693)
Q Consensus       195 ~~l~~L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l  271 (693)
                      +.+++|++|++++|.++.+.+..+..+   ++|++|++++|.++.++...+   ++|++|++++|+  ++.+|.  +..+
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~--l~~~~~--~~~l  293 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNR--LNRAPQ--PDEL  293 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCC--CCSCCC--TTSC
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc---CCCCEEECCCCc--CCCCch--hhhC
Confidence            778999999999999998855445555   689999999998887776542   677778887777  444443  4566


Q ss_pred             CCccEEEcCCCCCcc
Q psy8029         272 PLLNTVILGESSIAE  286 (693)
Q Consensus       272 ~~L~~L~l~~n~l~~  286 (693)
                      ++|+.|++++|.++.
T Consensus       294 ~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          294 PEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCSCEECSSTTTSC
T ss_pred             CCccEEECcCCCCCC
Confidence            777777777776653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1.1e-22  Score=204.48  Aligned_cols=176  Identities=30%  Similarity=0.478  Sum_probs=88.3

Q ss_pred             ccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcE
Q psy8029          75 TTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQV  154 (693)
Q Consensus        75 ~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  154 (693)
                      +.|+.|+++++  .++.++  .++.+++|++|++++| .+++++  .+..+++|++|++++|.++++++..|.++++|++
T Consensus        41 ~~L~~L~l~~~--~i~~~~--~l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           41 NSIDQIIANNS--DIKSVQ--GIQYLPNVRYLALGGN-KLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             TTCCEEECTTS--CCCCCT--TGGGCTTCCEEECTTS-CCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             cceeeeeeCCC--Cccccc--ccccCCCCcEEECCCC-CCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            34455555554  444443  3444555555555555 454443  2444555555555555555554444455555555


Q ss_pred             EEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcc
Q psy8029         155 LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF  234 (693)
Q Consensus       155 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  234 (693)
                      |++++|.++++++..|..+++|++|++++|+++++++..|+.+++|++|++++|.++.+++..|..+++|++|++++|.+
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            55555555555444445555555555555555554444444555555555555555555444444455555555555555


Q ss_pred             ccCChhhhhcccCceEEEEecCC
Q psy8029         235 QMFPKDLFAEMKYLQVIKISYHK  257 (693)
Q Consensus       235 ~~~~~~~~~~~~~L~~L~l~~n~  257 (693)
                      +.+++..|..+++|++|++++|.
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          194 KSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CccCHHHHhCCcCCCEEEccCCC
Confidence            54444444444455555554443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.88  E-value=1.3e-22  Score=212.80  Aligned_cols=207  Identities=28%  Similarity=0.350  Sum_probs=161.9

Q ss_pred             cEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc--c-CCCCCCeEeCCCCccccccccccCCCCCCcEEECCC
Q psy8029         324 VKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL--V-GLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSH  400 (693)
Q Consensus       324 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  400 (693)
                      +.++++++.++.+|...   ...++.|+|++|+++.++..  . .+++|++|+|++|.|+++.+.+|.++++|++|+|++
T Consensus        21 ~~l~c~~~~l~~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            56777777777777643   34577788888888776654  3 788888888888888888888888899999999999


Q ss_pred             CcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCccc---ccCCCccEEECCCC
Q psy8029         401 NLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLD---SIVSNKLTLDLSFN  477 (693)
Q Consensus       401 n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~N  477 (693)
                      |.++..    ....|..+++|++|+|++|.|+++.+..|..+++|+.|+|++|+|++++...+   ..+++|+.|+|++|
T Consensus        98 N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A           98 NHLHTL----DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             SCCCEE----CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred             CcCCcC----CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence            998866    35678888999999999999999888889999999999999999999888776   56888999999999


Q ss_pred             CCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHH-HHHHhcccccceeeeeeeccCceeecCC
Q psy8029         478 QIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDL-IRFVSKKMTKTVYQMLELVTDNLECFGN  554 (693)
Q Consensus       478 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~c~~~  554 (693)
                      +|+.++...+..+...            .++.+++++|||.|||++.|+ ..|....... +    ......++|..|
T Consensus       174 ~l~~l~~~~~~~l~~~------------~l~~l~l~~N~~~C~C~l~~~~~~~~~~~~~~-~----~~~~~~~~C~~p  234 (361)
T 2xot_A          174 KLKKLPLTDLQKLPAW------------VKNGLYLHNNPLECDCKLYQLFSHWQYRQLSS-V----MDFQEDLYCMHS  234 (361)
T ss_dssp             CCCCCCHHHHHHSCHH------------HHTTEECCSSCEECCHHHHHHHHHHHHTTCHH-H----HTTGGGCEEESS
T ss_pred             CCCccCHHHhhhccHh------------hcceEEecCCCccCCcCcHHHHHHHHHhcCCc-h----hccCcCCEeCCC
Confidence            9998887777665321            135799999999999999986 5676553211 1    112356889888

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.88  E-value=4.2e-22  Score=207.95  Aligned_cols=239  Identities=22%  Similarity=0.314  Sum_probs=197.2

Q ss_pred             cEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccc-cCcccCCCCCCCcE-E
Q psy8029          78 NTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITE-LYSGVFQYVPKLQV-L  155 (693)
Q Consensus        78 ~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~-L  155 (693)
                      ++++.+++  +++.||.. +  .+++++|+|++| +|+.+++++|.++++|++|+|++|++.+ ++.++|.+++++++ +
T Consensus        12 ~~v~C~~~--~Lt~iP~~-l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l   85 (350)
T 4ay9_X           12 RVFLCQES--KVTEIPSD-L--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   85 (350)
T ss_dssp             TEEEEEST--TCCSCCTT-C--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred             CEEEecCC--CCCccCcC-c--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence            56778887  89999843 3  368999999999 9999999999999999999999999855 88888999998876 5


Q ss_pred             EcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcC-CCCCcCCCCcCCCCC-CCcEEEcCCCc
Q psy8029         156 DLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISG-NNISILPSGVFSDLR-KLQTFYANSNR  233 (693)
Q Consensus       156 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~-~L~~L~l~~n~  233 (693)
                      .++.|+++.+++.+|..+++|++|++++|+++.+++..+....++..+++.+ +.+..++...|..+. .++.|++++|.
T Consensus        86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~  165 (350)
T 4ay9_X           86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG  165 (350)
T ss_dssp             EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred             cccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence            6677899999999999999999999999999999887777788889999965 678888888887775 68899999999


Q ss_pred             cccCChhhhhcccCceEEEEec-CCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcC
Q psy8029         234 FQMFPKDLFAEMKYLQVIKISY-HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSL  312 (693)
Q Consensus       234 l~~~~~~~~~~~~~L~~L~l~~-n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l  312 (693)
                      ++.++..+|. ..+|+++++.+ |.  ++.+|..+|..+++|++|++++|+++.+|...|   .+|+.|.+.++..++.+
T Consensus       166 i~~i~~~~f~-~~~L~~l~l~~~n~--l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~l  239 (350)
T 4ay9_X          166 IQEIHNSAFN-GTQLDELNLSDNNN--LEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKL  239 (350)
T ss_dssp             CCEECTTSST-TEEEEEEECTTCTT--CCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCC
T ss_pred             ccCCChhhcc-ccchhHHhhccCCc--ccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcC
Confidence            9999888774 46788888875 44  668888888888888999998888888887554   45666666666567777


Q ss_pred             ChhhhcCCCCCcEEEccC
Q psy8029         313 PSTLFRDCKKLVKLELQR  330 (693)
Q Consensus       313 ~~~~~~~~~~L~~L~l~~  330 (693)
                      |.  +..+++|+.+++++
T Consensus       240 P~--l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          240 PT--LEKLVALMEASLTY  255 (350)
T ss_dssp             CC--TTTCCSCCEEECSC
T ss_pred             CC--chhCcChhhCcCCC
Confidence            75  46677777777754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=2.6e-22  Score=205.37  Aligned_cols=195  Identities=25%  Similarity=0.367  Sum_probs=115.7

Q ss_pred             CCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceE
Q psy8029         271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTL  350 (693)
Q Consensus       271 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  350 (693)
                      +++|+.|+++++.+..++  .+..+++|+.|++++| .+..++.  +..+++|++|++++|.++.++.  +..+++|+.|
T Consensus        40 l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  112 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTL  112 (308)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEE
T ss_pred             cCCcCEEEeeCCCccCch--hhhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCcCCCchh--hcCCCCCCEE
Confidence            445555555555555443  2344555555555555 5555554  4555666666666666655542  4556666666


Q ss_pred             eccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCC
Q psy8029         351 NLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNR  430 (693)
Q Consensus       351 ~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~  430 (693)
                      ++++|++++++....+++|++|++++|.++++.+  +..+++|++|++++|.++..      .++..+++|++|++++|.
T Consensus       113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL------TPLANLSKLTTLKADDNK  184 (308)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSC
T ss_pred             ECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC------hhhcCCCCCCEEECCCCc
Confidence            6666666665555566666666666666665544  55566666666666666633      125566666666666666


Q ss_pred             CCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeec
Q psy8029         431 ISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDL  484 (693)
Q Consensus       431 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  484 (693)
                      ++++++  +..+++|+.|++++|+++++++  +..+++|+.|++++|+++..+.
T Consensus       185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          185 ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             CCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred             cCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCe
Confidence            666554  5666666666666666666653  4566666667776666665443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=4.5e-21  Score=190.24  Aligned_cols=175  Identities=26%  Similarity=0.431  Sum_probs=119.4

Q ss_pred             ccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEE
Q psy8029          77 INTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD  156 (693)
Q Consensus        77 L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  156 (693)
                      .++++++++  .++.++.. +.  +++++|++++| .++.+++..|.++++|++|++++|.++++++..|.++++|++|+
T Consensus        16 ~~~l~~~~~--~l~~~p~~-~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           16 KKEVDCQGK--SLDSVPSG-IP--ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GTEEECTTC--CCSSCCSC-CC--TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CeEEecCCC--CccccCCC-CC--CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence            456666666  66666632 22  46677777777 77776666677777777777777777766666666777777777


Q ss_pred             cCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcccc
Q psy8029         157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM  236 (693)
Q Consensus       157 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~  236 (693)
                      +++|.++.+++..|..+++|++|++++|+++++++..|..+++|++|++++|.++.+++..|..+++|++|++++|.++.
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            77777777666666677777777777777776666666667777777777777776666666666777777777777666


Q ss_pred             CChhhhhcccCceEEEEecCC
Q psy8029         237 FPKDLFAEMKYLQVIKISYHK  257 (693)
Q Consensus       237 ~~~~~~~~~~~L~~L~l~~n~  257 (693)
                      +++..|..+++|++|++++|+
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCC
T ss_pred             cCHHHHhCCCCCCEEEeeCCc
Confidence            666656666666666666665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1.3e-21  Score=200.19  Aligned_cols=198  Identities=22%  Similarity=0.350  Sum_probs=118.3

Q ss_pred             CCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCC
Q psy8029          97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSL  176 (693)
Q Consensus        97 ~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  176 (693)
                      +..+++|++|++++| .++.++.  +..+++|++|++++|.++++++  |..+++|++|++++|.+++++  .+..+++|
T Consensus        37 ~~~l~~L~~L~l~~~-~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L  109 (308)
T 1h6u_A           37 QADLDGITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSI  109 (308)
T ss_dssp             HHHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTC
T ss_pred             HHHcCCcCEEEeeCC-CccCchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCC
Confidence            344556666666666 6655542  5556666666666666655554  556666666666666665553  35566666


Q ss_pred             CEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecC
Q psy8029         177 RILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYH  256 (693)
Q Consensus       177 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  256 (693)
                      ++|++++|+++++++  +..+++|++|++++|.++.+++  +..+++|+.|++++|.++.++.  +..+++|++|++++|
T Consensus       110 ~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          110 KTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN  183 (308)
T ss_dssp             CEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC
Confidence            666666666665543  5566666666666666665554  5556666666666666665544  556666666666666


Q ss_pred             CCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCCh
Q psy8029         257 KDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS  314 (693)
Q Consensus       257 ~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~  314 (693)
                      .  +..++.  +..+++|++|++++|.+.++++  +..+++|+.|++++| .+...|.
T Consensus       184 ~--l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N-~i~~~~~  234 (308)
T 1h6u_A          184 K--ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ-TITNQPV  234 (308)
T ss_dssp             C--CCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEE-EEECCCE
T ss_pred             c--cCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCC-eeecCCe
Confidence            5  334443  4556666666666666666553  456666666666666 5555443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.86  E-value=1.2e-20  Score=184.19  Aligned_cols=197  Identities=19%  Similarity=0.219  Sum_probs=149.5

Q ss_pred             CceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEEC
Q psy8029         347 LYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL  426 (693)
Q Consensus       347 L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~L  426 (693)
                      -+.++.++++++.+|.. -.++|++|+|++|.++++.+..|..+++|++|++++|.++..    ....|..+++|++|+|
T Consensus        21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i----~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL----PVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEEC
T ss_pred             CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc----ChhhcccCCCcCEEEC
Confidence            45677777777776653 236788888888888888888888888899999988888755    2456788889999999


Q ss_pred             CCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCcccccccc
Q psy8029         427 SYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARS  506 (693)
Q Consensus       427 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~  506 (693)
                      ++|+++++++..|..+++|+.|+|++|+|+.++.. +..+++|+.|++++|+|+.++...+..+              ++
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l--------------~~  160 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRL--------------SS  160 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTT-GGGCTTCSEEECCSSCCCCCCTTTTTTC--------------TT
T ss_pred             CCCcCCccChhHhCcchhhCeEeccCCcccccCcc-cccCCCCCEEECCCCcCCccCHHHHhCC--------------CC
Confidence            99999988888888899999999999999987655 5788899999999999998877666554              45


Q ss_pred             CcEEEcCCCcccccCC-cHHHHHHHhcccccce--eeeeeeccCceeecCCCCccccccCC
Q psy8029         507 ANIVILNDNPIACNCS-NYDLIRFVSKKMTKTV--YQMLELVTDNLECFGNAGVGINSVRP  564 (693)
Q Consensus       507 l~~l~l~~Np~~c~C~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~c~~~~~~~~~~l~~  564 (693)
                      ++.+++++|||.|+|. ..|+..|+........  ......+.....|..+ +..+.++..
T Consensus       161 L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~v~~~~~~~C~~~-~~~~~~~~~  220 (229)
T 3e6j_A          161 LTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKAVNDPDSAKCAGT-NTPVRAVTE  220 (229)
T ss_dssp             CCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECTTCSBBTTT-CCBGGGCCG
T ss_pred             CCEEEeeCCCccCCcchhHHHHHHHHhCccccccccCcccCCCCcCccCCC-Cccceeccc
Confidence            8899999999999996 8899999987532211  1111234556777765 344444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.86  E-value=1.9e-20  Score=197.78  Aligned_cols=263  Identities=14%  Similarity=0.238  Sum_probs=144.0

Q ss_pred             cccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEE
Q psy8029         100 LHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRIL  179 (693)
Q Consensus       100 l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  179 (693)
                      +..++.+.+..  .++.|+..+|.++ +|+.+.+..+ ++.++..+|.++ +|+.+.+.. .+..+...+|.+|.+|+.+
T Consensus       112 ~~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          112 LKGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             CSSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             cCCccEEEECC--ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            34555555554  3555555555553 4555555443 555555555553 455555554 4555555555555555555


Q ss_pred             EccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCc
Q psy8029         180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDS  259 (693)
Q Consensus       180 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~  259 (693)
                      ++++|+++.++..+|. +.+|+.+.+.. .++.+...+|.++++|+.+.+..+ ++.++..+|.+ .+|+.+.+..+   
T Consensus       186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~---  258 (401)
T 4fdw_A          186 DLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG---  258 (401)
T ss_dssp             ECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT---
T ss_pred             ecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC---
Confidence            5555555555555554 35555555552 255555555555555555555543 45555555555 45555555332   


Q ss_pred             ccccCccccCCCCCccEEEcCCCCCc-----ccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCC
Q psy8029         260 LKELPSGLFANLPLLNTVILGESSIA-----ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK  334 (693)
Q Consensus       260 ~~~i~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~  334 (693)
                      +..++..+|.++++|+.+.+.++.+.     .++..+|.+|++|+.+.+..  .+..++..+|.+|++|+.+.+..+ ++
T Consensus       259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~-l~  335 (401)
T 4fdw_A          259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN-VT  335 (401)
T ss_dssp             CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred             ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc-cc
Confidence            34555555555666666655554443     45555666666666666652  455566666666666666666433 55


Q ss_pred             CCChhhhccCccCceEeccCCcCccccCc--cCC-CCCCeEeCCCCcc
Q psy8029         335 YLPENLFESLKELYTLNLKNNQLENITSL--VGL-SGLNSLDLSWNQL  379 (693)
Q Consensus       335 ~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~l-~~L~~L~Ls~n~l  379 (693)
                      .++..+|.++ +|+.+.+.+|.+..++..  .++ .+++.|++..+.+
T Consensus       336 ~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          336 QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            5555556666 666666666655554433  333 2555666655543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=2.6e-22  Score=210.68  Aligned_cols=255  Identities=18%  Similarity=0.214  Sum_probs=126.5

Q ss_pred             EEccCCcCcccccccccCCCCCCcEEEeeCCcccccCc----ccCCCCC-CCcEEEcCCCCCCccChhhhCCC-----CC
Q psy8029         106 ILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYS----GVFQYVP-KLQVLDLGSNDVAYMDPEIFKNL-----TS  175 (693)
Q Consensus       106 L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~  175 (693)
                      +++++| .+++..+..+...++|++|++++|.++..+.    .+|..++ +|++|++++|.+....+..+..+     ++
T Consensus         3 ~~ls~n-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLH-PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCC-TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccc-cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            455555 5555555544444456666666666655544    4455555 56666666666655555444443     56


Q ss_pred             CCEEEccCCCCCCCChhh----cCCC-CCCcEEECcCCCCCcCCCCcC----CC-CCCCcEEEcCCCccccCChhhhhcc
Q psy8029         176 LRILNLDHNQLINLTRAI----FNNV-PNLRSLDISGNNISILPSGVF----SD-LRKLQTFYANSNRFQMFPKDLFAEM  245 (693)
Q Consensus       176 L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~i~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~~~~~~~~  245 (693)
                      |++|++++|++++.....    +..+ ++|++|++++|.++..+...+    .. .++|++|++++|.++......+.. 
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-  160 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ-  160 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH-
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH-
Confidence            666666666665544432    2222 555555555555554443222    22 235555555555555333222110 


Q ss_pred             cCceEEEEecCCCcccccCccccCCCC-CccEEEcCCCCCcccCccc----ccCC-CCccEEEecCCCCCCc-----CCh
Q psy8029         246 KYLQVIKISYHKDSLKELPSGLFANLP-LLNTVILGESSIAELPSDL----FWNS-TNITNIVLTGHKKLTS-----LPS  314 (693)
Q Consensus       246 ~~L~~L~l~~n~~~~~~i~~~~~~~l~-~L~~L~l~~n~l~~~~~~~----~~~~-~~L~~L~l~~n~~l~~-----l~~  314 (693)
                                          . +...+ +|++|++++|.++......    +..+ ++|+.|++++| .++.     ++.
T Consensus       161 --------------------~-l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~  218 (362)
T 3goz_A          161 --------------------I-LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAY  218 (362)
T ss_dssp             --------------------H-HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHH
T ss_pred             --------------------H-HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHH
Confidence                                0 11121 3444444444443333211    1222 34555555554 4443     222


Q ss_pred             hhhcCCCCCcEEEccCCCCCCCCh----hhhccCccCceEeccCCcCccccC---------ccCCCCCCeEeCCCCcccc
Q psy8029         315 TLFRDCKKLVKLELQRNKLKYLPE----NLFESLKELYTLNLKNNQLENITS---------LVGLSGLNSLDLSWNQLEQ  381 (693)
Q Consensus       315 ~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~Ls~n~l~~l~~---------~~~l~~L~~L~Ls~n~l~~  381 (693)
                      .+....++|++|++++|.++..+.    ..+..+++|+.|++++|.+..+..         ...+++|++|++++|.+.+
T Consensus       219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            222223466666666666655443    223445666666666666433221         1456677788888888776


Q ss_pred             ccc
Q psy8029         382 INL  384 (693)
Q Consensus       382 ~~~  384 (693)
                      ..+
T Consensus       299 ~~~  301 (362)
T 3goz_A          299 SHS  301 (362)
T ss_dssp             GGC
T ss_pred             cch
Confidence            544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.85  E-value=2.4e-20  Score=198.01  Aligned_cols=317  Identities=20%  Similarity=0.283  Sum_probs=202.5

Q ss_pred             CccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccCh
Q psy8029          88 NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP  167 (693)
Q Consensus        88 ~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  167 (693)
                      .++.|...+|.+|.+|+.+.+..  .++.|+..+|.+|++|+.+++..+ ++.++..+|.++.+|+.+.+..+ +..+..
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~  133 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV  133 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred             eEeEhHHHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc
Confidence            56788888999999999999975  588898889999999999998754 77888888999999988877654 677777


Q ss_pred             hhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccC
Q psy8029         168 EIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY  247 (693)
Q Consensus       168 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  247 (693)
                      .+|.++..++....  ..+..+...+|.++++|+.+.+..+ +..+...+|.++++|+.+.+..+ ++.+...+|.++..
T Consensus       134 ~aF~~~~~~~~~~~--~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~  209 (394)
T 4fs7_A          134 EAFKGCDFKEITIP--EGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECIL  209 (394)
T ss_dssp             TTTTTCCCSEEECC--TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTT
T ss_pred             eeeecccccccccC--ccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccc
Confidence            77887765443322  2344556677888888888888654 56677777888888888888765 66777777777777


Q ss_pred             ceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEE
Q psy8029         248 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE  327 (693)
Q Consensus       248 L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~  327 (693)
                      |+.+.+..+.   ..+...+ .....|+.+.+.. .+..+...+|.++..++.+.+..+  ...++...|..+..++.+.
T Consensus       210 L~~i~~~~~~---~~i~~~~-~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~  282 (394)
T 4fs7_A          210 LENMEFPNSL---YYLGDFA-LSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVI  282 (394)
T ss_dssp             CCBCCCCTTC---CEECTTT-TTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEE
T ss_pred             cceeecCCCc---eEeehhh-cccCCCceEEECC-CceecccccccccccceeEEcCCC--cceeeccccccccccceec
Confidence            7777666553   2333332 2345666666643 345556666666666776666553  4455555566666666666


Q ss_pred             ccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccc
Q psy8029         328 LQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDE  407 (693)
Q Consensus       328 l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  407 (693)
                      .....   ++...|..+.+|+.+.+..+                       +..+...+|.++.+|+.+++..+ ++.. 
T Consensus       283 ~~~~~---i~~~~F~~~~~L~~i~l~~~-----------------------i~~I~~~aF~~c~~L~~i~lp~~-v~~I-  334 (394)
T 4fs7_A          283 YGSVI---VPEKTFYGCSSLTEVKLLDS-----------------------VKFIGEEAFESCTSLVSIDLPYL-VEEI-  334 (394)
T ss_dssp             ECSSE---ECTTTTTTCTTCCEEEECTT-----------------------CCEECTTTTTTCTTCCEECCCTT-CCEE-
T ss_pred             cCcee---eccccccccccccccccccc-----------------------cceechhhhcCCCCCCEEEeCCc-ccEE-
Confidence            55432   34444555555555555432                       33444444555555555555422 3322 


Q ss_pred             cccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECC
Q psy8029         408 YQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLR  451 (693)
Q Consensus       408 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  451 (693)
                         +..+|.+|.+|+.+++..+ ++.+...+|.+|++|+.+++.
T Consensus       335 ---~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          335 ---GKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             ---CTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             ---hHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence               2444555555555555443 444444455555555555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.85  E-value=8.5e-21  Score=179.66  Aligned_cols=170  Identities=24%  Similarity=0.256  Sum_probs=117.4

Q ss_pred             eEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEEC
Q psy8029         371 SLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDL  450 (693)
Q Consensus       371 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  450 (693)
                      .+++++|.++.++...+   ++|++|++++|.++..     +..|..+++|++|+|++|.|+++.+..|.++++|+.|+|
T Consensus        14 ~l~~~~~~l~~ip~~~~---~~l~~L~L~~n~i~~i-----p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L   85 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGIP---RDVTELYLDGNQFTLV-----PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL   85 (193)
T ss_dssp             EEECTTSCCSSCCSCCC---TTCCEEECCSSCCCSC-----CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             EEEcCCCCCCcCCCCCC---CCCCEEECCCCcCchh-----HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence            44444454444433221   3556666666665532     345566667777777777777776666777777777777


Q ss_pred             CCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHH
Q psy8029         451 RHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFV  530 (693)
Q Consensus       451 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~  530 (693)
                      ++|+|+++++..|..+++|+.|+|++|+|+.++...+..+              ++++.+++++|||.|+|++.||..|+
T Consensus        86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l--------------~~L~~L~L~~N~~~C~c~l~~l~~~~  151 (193)
T 2wfh_A           86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDL--------------SALSHLAIGANPLYCDCNMQWLSDWV  151 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC--------------TTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred             CCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcC--------------ccccEEEeCCCCeecCCcCHHHHHHH
Confidence            7777777777667777777777777777777666655544              45789999999999999999999999


Q ss_pred             hcccccceeeeeeeccCceeecCC---CCccccccCCCCCcccC
Q psy8029         531 SKKMTKTVYQMLELVTDNLECFGN---AGVGINSVRPENLTCDT  571 (693)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~~~~l~c~~  571 (693)
                      ....         .....+.|..|   +|..+.+++...+.|..
T Consensus       152 ~~~~---------~~~~~~~C~~P~~l~g~~l~~~~~~~~~~~~  186 (193)
T 2wfh_A          152 KSEY---------KEPGIARCAGPGEMADKLLLTTPSKKFTCAA  186 (193)
T ss_dssp             HHSS---------CCCSCCBEEESGGGTTCBTTTSCGGGCCC--
T ss_pred             Hhcc---------CCCCCcCcCCchHHCCCCcccCChHHeeehh
Confidence            8742         12346789988   88889999887776654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=3.7e-22  Score=209.53  Aligned_cols=253  Identities=20%  Similarity=0.218  Sum_probs=157.5

Q ss_pred             EEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccCh----hhhCCCC-CCCEEEccCCCCCCCChhhcCCC-----CCC
Q psy8029         131 LNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP----EIFKNLT-SLRILNLDHNQLINLTRAIFNNV-----PNL  200 (693)
Q Consensus       131 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~L  200 (693)
                      +++++|.+++..+..+...++|++|++++|.++...+    .+|..++ +|++|++++|++++.....+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4455555555433333444446666666666655555    4455555 56666666665555544433332     455


Q ss_pred             cEEECcCCCCCcCCCCc----CCCC-CCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCC-CCCc
Q psy8029         201 RSLDISGNNISILPSGV----FSDL-RKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN-LPLL  274 (693)
Q Consensus       201 ~~L~L~~n~i~~~~~~~----~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~-l~~L  274 (693)
                      ++|++++|.++......    +..+ ++|++|++++|.++..+...+.                      ..+.. .++|
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~----------------------~~l~~~~~~L  140 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK----------------------QAFSNLPASI  140 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH----------------------HHHTTSCTTC
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH----------------------HHHHhCCCce
Confidence            55555555544433321    1122 3444444444444433332221                      11333 3578


Q ss_pred             cEEEcCCCCCcccCccc----ccCCC-CccEEEecCCCCCCcCChh----hhcCC-CCCcEEEccCCCCCC-----CChh
Q psy8029         275 NTVILGESSIAELPSDL----FWNST-NITNIVLTGHKKLTSLPST----LFRDC-KKLVKLELQRNKLKY-----LPEN  339 (693)
Q Consensus       275 ~~L~l~~n~l~~~~~~~----~~~~~-~L~~L~l~~n~~l~~l~~~----~~~~~-~~L~~L~l~~n~l~~-----~~~~  339 (693)
                      ++|++++|.++......    +...+ +|++|++++| .++.....    .+..+ ++|++|++++|.++.     ++..
T Consensus       141 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~  219 (362)
T 3goz_A          141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI  219 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             eEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH
Confidence            88888888877543322    23444 9999999999 88877653    34455 599999999999987     3333


Q ss_pred             hhccCccCceEeccCCcCccccC------ccCCCCCCeEeCCCCccccccc-------cccCCCCCCcEEECCCCcCccc
Q psy8029         340 LFESLKELYTLNLKNNQLENITS------LVGLSGLNSLDLSWNQLEQINL-------IAFDGLSSLNTVDLSHNLLTFD  406 (693)
Q Consensus       340 ~~~~~~~L~~L~Ls~n~l~~l~~------~~~l~~L~~L~Ls~n~l~~~~~-------~~~~~l~~L~~L~L~~n~l~~~  406 (693)
                      .....++|++|++++|++++.+.      ...+++|++|++++|.+.++.+       ..+..+++|+.|++++|.+...
T Consensus       220 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            32335699999999999988654      2678899999999999665543       3677889999999999999854

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.85  E-value=5.7e-20  Score=194.09  Aligned_cols=260  Identities=16%  Similarity=0.300  Sum_probs=122.9

Q ss_pred             CCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEEC
Q psy8029         126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDI  205 (693)
Q Consensus       126 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  205 (693)
                      ..++.+.+. +.++.|+..+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++.+...+|.+|++|+.+++
T Consensus       113 ~~l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          113 KGYNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             SSCSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred             CCccEEEEC-CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence            444444443 23444555555443 4555555443 444444445442 355555543 444444444555555555555


Q ss_pred             cCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCc
Q psy8029         206 SGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA  285 (693)
Q Consensus       206 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~  285 (693)
                      ..|.++.++..+|. +.+|+.+.+..+ ++.|+..+|.++++|+.+.+..+   +..++..+|.+ .+|+.+.+ .+.++
T Consensus       188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~---l~~I~~~aF~~-~~L~~i~l-p~~i~  260 (401)
T 4fdw_A          188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN---VSTIGQEAFRE-SGITTVKL-PNGVT  260 (401)
T ss_dssp             TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT---CCEECTTTTTT-CCCSEEEE-ETTCC
T ss_pred             CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC---ccCcccccccc-CCccEEEe-CCCcc
Confidence            55555555554444 345555555422 44455555555555555555443   33444444444 34555555 23344


Q ss_pred             ccCcccccCCCCccEEEecCCCCCC-----cCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccc
Q psy8029         286 ELPSDLFWNSTNITNIVLTGHKKLT-----SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI  360 (693)
Q Consensus       286 ~~~~~~~~~~~~L~~L~l~~n~~l~-----~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l  360 (693)
                      .++..+|.+|++|+.+.+.++ .+.     .++..+|.+|++|+.+++. +.++.++..+|.+|.+|+.+.+..+ ++.+
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I  337 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQI  337 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred             EEChhHhhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence            444455555555555555443 222     3444445555555555554 2344455455555555555555332 4333


Q ss_pred             cCc--cCCCCCCeEeCCCCccccccccccCCCC-CCcEEECCCC
Q psy8029         361 TSL--VGLSGLNSLDLSWNQLEQINLIAFDGLS-SLNTVDLSHN  401 (693)
Q Consensus       361 ~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n  401 (693)
                      +..  .++ +|+.+++++|.+..+...+|.+++ .++.|.+..+
T Consensus       338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence            322  344 455555555555444444444442 4444544443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.84  E-value=2.3e-20  Score=176.71  Aligned_cols=174  Identities=21%  Similarity=0.231  Sum_probs=133.8

Q ss_pred             CeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEE
Q psy8029         370 NSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELD  449 (693)
Q Consensus       370 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  449 (693)
                      +++++++|.++.++...+   .+|++|++++|.++...   ....+..+++|++|+|++|.++++.+..|.++++|+.|+
T Consensus        11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   84 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRIS---SDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBC---CSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccC---CccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence            456666666655544222   26677777777776542   112467788888888888888888888888888888888


Q ss_pred             CCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHH
Q psy8029         450 LRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRF  529 (693)
Q Consensus       450 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~  529 (693)
                      |++|+|+++++..+..+++|+.|++++|+|+++.+..+..+              ++++.+++++|||.|+|++.|+..|
T Consensus        85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--------------~~L~~L~L~~N~l~c~c~l~~~~~~  150 (192)
T 1w8a_A           85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL--------------NSLTSLNLASNPFNCNCHLAWFAEW  150 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTC--------------TTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcC--------------CCCCEEEeCCCCccCcCcchHHHHH
Confidence            98888888888878888889999999999988877766554              4588999999999999999999999


Q ss_pred             HhcccccceeeeeeeccCceeecCC---CCccccccCCCCCcccCC
Q psy8029         530 VSKKMTKTVYQMLELVTDNLECFGN---AGVGINSVRPENLTCDTK  572 (693)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~~~~l~c~~~  572 (693)
                      ++...         ...+...|..|   +|..+.+++.+++.|..+
T Consensus       151 l~~~~---------~~~~~~~C~~P~~l~~~~l~~l~~~~~~C~~~  187 (192)
T 1w8a_A          151 LRKKS---------LNGGAARCGAPSKVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             HHHHC---------CSGGGCBBCSSTTTTTSBGGGSCTTTCCCCCC
T ss_pred             HHHcC---------CCCCCCCCCCChHHcCCChhhCcHhhcCcCCC
Confidence            87641         23346789888   888999999999988643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=4.3e-21  Score=196.83  Aligned_cols=227  Identities=18%  Similarity=0.118  Sum_probs=139.2

Q ss_pred             cccEEEccCCcCccccccc---ccCCCCCCcEEEeeCCcccccCcccC--CCCCCCcEEEcCCCCCCccCh----hhhCC
Q psy8029         102 FVKHILLSHNKEITGLHKD---IFKGTPQLESLNLRGNSITELYSGVF--QYVPKLQVLDLGSNDVAYMDP----EIFKN  172 (693)
Q Consensus       102 ~L~~L~Ls~n~~i~~~~~~---~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~----~~~~~  172 (693)
                      .++.+.+.++ .++.....   .+..+++|++|++++|.+++..+..+  ..+++|++|++++|.+.+..+    ..+..
T Consensus        65 ~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           65 RVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             ceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            4677777776 55432110   12234568888888888876555555  778888888888888775322    34456


Q ss_pred             CCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCc---CCC-CcCCCCCCCcEEEcCCCccccCChh---hhhcc
Q psy8029         173 LTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISI---LPS-GVFSDLRKLQTFYANSNRFQMFPKD---LFAEM  245 (693)
Q Consensus       173 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~---~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~  245 (693)
                      +++|++|++++|+++++.+..|+.+++|++|++++|++.+   ++. ..+..+++|++|++++|.++.++..   .+..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            7888888888888888777777888888888888887653   222 2235677888888888877654432   34555


Q ss_pred             cCceEEEEecCCCccccc-CccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCc
Q psy8029         246 KYLQVIKISYHKDSLKEL-PSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV  324 (693)
Q Consensus       246 ~~L~~L~l~~n~~~~~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~  324 (693)
                      ++|++|++++|++  ..+ |+. +..+                     ..+++|++|++++| .++.+|..++   ++|+
T Consensus       224 ~~L~~L~Ls~N~l--~~~~p~~-~~~~---------------------~~~~~L~~L~Ls~N-~l~~lp~~~~---~~L~  275 (310)
T 4glp_A          224 VQPHSLDLSHNSL--RATVNPS-APRC---------------------MWSSALNSLNLSFA-GLEQVPKGLP---AKLR  275 (310)
T ss_dssp             CCCSSEECTTSCC--CCCCCSC-CSSC---------------------CCCTTCCCEECCSS-CCCSCCSCCC---SCCS
T ss_pred             CCCCEEECCCCCC--Cccchhh-HHhc---------------------cCcCcCCEEECCCC-CCCchhhhhc---CCCC
Confidence            6666666666662  232 222 2222                     01134455555554 4444444332   4566


Q ss_pred             EEEccCCCCCCCChhhhccCccCceEeccCCcCcc
Q psy8029         325 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN  359 (693)
Q Consensus       325 ~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~  359 (693)
                      +|++++|+++.+|.  +..+++|+.|++++|++++
T Consensus       276 ~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          276 VLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CEECCSCCCCSCCC--TTSCCCCSCEECSSTTTSC
T ss_pred             EEECCCCcCCCCch--hhhCCCccEEECcCCCCCC
Confidence            66666666665544  4556666666666666543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.84  E-value=1.2e-21  Score=202.75  Aligned_cols=99  Identities=20%  Similarity=0.279  Sum_probs=43.0

Q ss_pred             CCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCc-eEeccCCcCccccCc--cCCCCCCe
Q psy8029         295 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY-TLNLKNNQLENITSL--VGLSGLNS  371 (693)
Q Consensus       295 ~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~Ls~n~l~~l~~~--~~l~~L~~  371 (693)
                      +++|+.+++++| .++.++..+|.+|++|+++++++| ++.++..+|.++.+|+ .+++.+ .++.++..  .+|++|+.
T Consensus       225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            344444444444 444444444444444444444444 4444444444444444 444443 33333222  33333444


Q ss_pred             EeCCCCccccccccccCCCCCCcEE
Q psy8029         372 LDLSWNQLEQINLIAFDGLSSLNTV  396 (693)
Q Consensus       372 L~Ls~n~l~~~~~~~~~~l~~L~~L  396 (693)
                      +++++|.++.+...+|.++++|+.+
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEE
T ss_pred             EEeCCCccCccchhhhcCCcchhhh
Confidence            4444444444444444444444444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.83  E-value=6.6e-21  Score=197.14  Aligned_cols=217  Identities=13%  Similarity=0.164  Sum_probs=102.2

Q ss_pred             CCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCC----CCCcCCCCcCCCCCCC
Q psy8029         149 VPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN----NISILPSGVFSDLRKL  224 (693)
Q Consensus       149 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n----~i~~~~~~~~~~l~~L  224 (693)
                      |++|+.|++.+ .++.+.+.+|.+|++|+.+++++|.+..+.+.+|.++.++..+....+    ....+...+|.++..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            55555555555 455555555555555555555555555555555555555554444432    1223334444445555


Q ss_pred             c-EEEcCCCccccCChhhhhc---ccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccE
Q psy8029         225 Q-TFYANSNRFQMFPKDLFAE---MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITN  300 (693)
Q Consensus       225 ~-~L~l~~n~l~~~~~~~~~~---~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  300 (693)
                      + .+.+...  ..++...+..   ..+++.+.+.++-..  .-.......+++|+.+++++|.++.++..+|.+|.+|+.
T Consensus       179 ~~~i~~~~~--~~l~~~~~~~~~~~~~~~~l~~~~~l~~--~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~  254 (329)
T 3sb4_A          179 ETTIQVGAM--GKLEDEIMKAGLQPRDINFLTIEGKLDN--ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK  254 (329)
T ss_dssp             EEEEEECTT--CCHHHHHHHTTCCGGGCSEEEEEECCCH--HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred             ceeEEecCC--CcHHHHHhhcccCccccceEEEeeeecH--HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence            4 3333221  1122222211   233344444332100  000001112455555555555555555555555555555


Q ss_pred             EEecCCCCCCcCChhhhcCCCCCc-EEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc--cCCCCCCeEe
Q psy8029         301 IVLTGHKKLTSLPSTLFRDCKKLV-KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL--VGLSGLNSLD  373 (693)
Q Consensus       301 L~l~~n~~l~~l~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~l~~L~~L~  373 (693)
                      +++.+|  +..++..+|.+|++|+ .+++.+ .++.++..+|.+|++|+.++++.|+++.++..  .++++|+.++
T Consensus       255 l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          255 IKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            555553  5555555555555555 555555 45555555555555555555555555555443  4555555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.83  E-value=1.5e-19  Score=191.77  Aligned_cols=306  Identities=18%  Similarity=0.292  Sum_probs=240.2

Q ss_pred             hcCcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCC
Q psy8029          71 KLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVP  150 (693)
Q Consensus        71 ~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~  150 (693)
                      +.+++.|+.+.|..   .++.|+..+|.+|.+|+.+++..  .++.++..+|.++++|+.+.+.. .++.+...+|.++.
T Consensus        67 F~~c~~L~~i~lp~---~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~-~l~~i~~~aF~~~~  140 (394)
T 4fs7_A           67 FQGCRKVTEIKIPS---TVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPL-MLKSIGVEAFKGCD  140 (394)
T ss_dssp             TTTCTTEEEEECCT---TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCT-TCCEECTTTTTTCC
T ss_pred             hhCCCCceEEEeCC---CccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccC-ceeeecceeeeccc
Confidence            45788999999953   79999999999999999999986  48999999999999999988875 47788889999887


Q ss_pred             CCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcC
Q psy8029         151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYAN  230 (693)
Q Consensus       151 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  230 (693)
                      .++.....  .+..+...+|.++.+|+.+.+.++ +..+...+|.++.+|+.+++..+ ++.+...+|.++..|+.+.+.
T Consensus       141 ~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~  216 (394)
T 4fs7_A          141 FKEITIPE--GVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP  216 (394)
T ss_dssp             CSEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred             ccccccCc--cccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence            65544433  345677788999999999999865 56788888999999999999876 788889999999999999887


Q ss_pred             CCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCC
Q psy8029         231 SNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT  310 (693)
Q Consensus       231 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~  310 (693)
                      .+. ..+....+ ....|+.+.+...   ...+...+|..+..++.+.+..+ ...+....|..+..++.+.....    
T Consensus       217 ~~~-~~i~~~~~-~~~~l~~i~ip~~---~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~----  286 (394)
T 4fs7_A          217 NSL-YYLGDFAL-SKTGVKNIIIPDS---FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSV----  286 (394)
T ss_dssp             TTC-CEECTTTT-TTCCCCEEEECTT---CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSS----
T ss_pred             CCc-eEeehhhc-ccCCCceEEECCC---ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCce----
Confidence            754 33444433 4578999988755   45778888999999999999765 55678888999999999988654    


Q ss_pred             cCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc--cCCCCCCeEeCCCCccccccccccC
Q psy8029         311 SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL--VGLSGLNSLDLSWNQLEQINLIAFD  388 (693)
Q Consensus       311 ~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~  388 (693)
                      .++..+|..+.+|+++.+.++ ++.++..+|.++.+|+.+++..+ ++.++..  .+|.+|+.+++..+ ++.+...+|.
T Consensus       287 ~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~  363 (394)
T 4fs7_A          287 IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ  363 (394)
T ss_dssp             EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred             eeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence            467778999999999999865 88899889999999999888643 5554433  45555555555544 5555555555


Q ss_pred             CCCCCcEEECC
Q psy8029         389 GLSSLNTVDLS  399 (693)
Q Consensus       389 ~l~~L~~L~L~  399 (693)
                      ++.+|+.+++.
T Consensus       364 ~C~~L~~i~lp  374 (394)
T 4fs7_A          364 GCINLKKVELP  374 (394)
T ss_dssp             TCTTCCEEEEE
T ss_pred             CCCCCCEEEEC
Confidence            55555555554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=4.5e-20  Score=202.52  Aligned_cols=221  Identities=24%  Similarity=0.257  Sum_probs=147.6

Q ss_pred             CccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEec
Q psy8029         273 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNL  352 (693)
Q Consensus       273 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  352 (693)
                      +++.|++++|.++++|..++   ++|+.|++++| .++.+|    ..+++|++|++++|.++.+|.  +..  +|+.|++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N-~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP---PQITVLEITQN-ALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC---TTCSEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCccCHhHc---CCCCEEECcCC-CCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEEC
Confidence            67777777777777665543   56777777777 677776    235777888888887777776  333  7788888


Q ss_pred             cCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCC
Q psy8029         353 KNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS  432 (693)
Q Consensus       353 s~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  432 (693)
                      ++|+++++|.  .+++|++|++++|.+++++.    .+++|++|++++|.++..     +. +.  ++|++|+|++|.|+
T Consensus       128 s~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~l-----p~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          128 DNNQLTMLPE--LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFL-----PE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             CSSCCSCCCC--CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC-----CC-CC--TTCCEEECCSSCCS
T ss_pred             CCCcCCCCCC--cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCc-----ch-hh--CCCCEEECcCCCCC
Confidence            8888877776  67788888888888877654    467788888888888754     22 33  78888888888888


Q ss_pred             cCChhHHhcCCCC-------cEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccc
Q psy8029         433 SLFDDWISSMTSL-------KELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVAR  505 (693)
Q Consensus       433 ~~~~~~~~~l~~L-------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~  505 (693)
                      .++.  +..  +|       +.|+|++|+|+.++...+ .+++|+.|+|++|++++..+..+..+........      +
T Consensus       194 ~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~~~~~------~  262 (571)
T 3cvr_A          194 SLPA--VPV--RNHHSEETEIFFRCRENRITHIPENIL-SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG------P  262 (571)
T ss_dssp             SCCC--CC----------CCEEEECCSSCCCCCCGGGG-GSCTTEEEECCSSSCCHHHHHHHHHHHHSCC---------C
T ss_pred             chhh--HHH--hhhcccccceEEecCCCcceecCHHHh-cCCCCCEEEeeCCcCCCcCHHHHHHhhcCccccC------C
Confidence            7655  333  56       888898888888877644 4888889999999988877777766543211000      0


Q ss_pred             cCcEEEcCC-------CcccccCCcHHHHHHHhc
Q psy8029         506 SANIVILND-------NPIACNCSNYDLIRFVSK  532 (693)
Q Consensus       506 ~l~~l~l~~-------Np~~c~C~~~~~~~~~~~  532 (693)
                      .+ .+++++       || .|+|...|+..+.++
T Consensus       263 ~~-~~~l~~~~~~~~~~p-~~~~~~~Wl~~~~~~  294 (571)
T 3cvr_A          263 RI-YFSMSDGQQNTLHRP-LADAVTAWFPENKQS  294 (571)
T ss_dssp             EE-ECCC----------C-CSHHHHTTCC-----
T ss_pred             ee-EEeeccccccccccc-chhhHHHHhhhhccc
Confidence            11 223333       55 699988888665443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.81  E-value=1.1e-20  Score=196.43  Aligned_cols=247  Identities=14%  Similarity=0.151  Sum_probs=139.5

Q ss_pred             ccEEEccCCcCcccccccccCCC--CCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCcc-ChhhhCCCCCCCEE
Q psy8029         103 VKHILLSHNKEITGLHKDIFKGT--PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYM-DPEIFKNLTSLRIL  179 (693)
Q Consensus       103 L~~L~Ls~n~~i~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  179 (693)
                      ++.++++++ .+.   +..+..+  ++++.|++++|.+.+.+... ..+++|++|++++|.+... .+..+..+++|++|
T Consensus        49 ~~~l~l~~~-~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           49 WQTLDLTGK-NLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             SSEEECTTC-BCC---HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             heeeccccc-cCC---HHHHHhhhhccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            566666666 544   2233444  56677777777666655443 3567777777777766543 34456667777777


Q ss_pred             EccCCCCCCCChhhcCCCCCCcEEECcCC-CCCcC-CCCcCCCCCCCcEEEcCCC-ccccC-Chhhhhccc-CceEEEEe
Q psy8029         180 NLDHNQLINLTRAIFNNVPNLRSLDISGN-NISIL-PSGVFSDLRKLQTFYANSN-RFQMF-PKDLFAEMK-YLQVIKIS  254 (693)
Q Consensus       180 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~-~L~~L~l~  254 (693)
                      ++++|++++..+..++.+++|++|++++| .++.. .+..+..+++|++|++++| .++.. .+..+..++ +|++|+++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            77777666555555666777777777776 45531 1223455667777777777 66532 233355666 77777777


Q ss_pred             cCC--CcccccCccccCCCCCccEEEcCCCC-CcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCC
Q psy8029         255 YHK--DSLKELPSGLFANLPLLNTVILGESS-IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN  331 (693)
Q Consensus       255 ~n~--~~~~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n  331 (693)
                      +|.  +....++. .+..+++|+.|++++|. ++......+..+++|+.|++++|..+.......+..+++|++|++++|
T Consensus       204 ~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          204 GYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             SCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCcccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            763  11122332 24556677777777766 444333345566667777776663222211123455666777777666


Q ss_pred             CCCCCChhhhccC-ccCceEeccCCcCcc
Q psy8029         332 KLKYLPENLFESL-KELYTLNLKNNQLEN  359 (693)
Q Consensus       332 ~l~~~~~~~~~~~-~~L~~L~Ls~n~l~~  359 (693)
                          ++...+..+ ..++.|++++|++++
T Consensus       283 ----i~~~~~~~l~~~l~~L~l~~n~l~~  307 (336)
T 2ast_B          283 ----VPDGTLQLLKEALPHLQINCSHFTT  307 (336)
T ss_dssp             ----SCTTCHHHHHHHSTTSEESCCCSCC
T ss_pred             ----cCHHHHHHHHhhCcceEEecccCcc
Confidence                222222222 224555555555555

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.81  E-value=7.9e-22  Score=209.08  Aligned_cols=237  Identities=20%  Similarity=0.183  Sum_probs=103.3

Q ss_pred             cCCCcccccEEEccCCcCccccccc----ccCCCCCCcEEEeeCCccccc----Ccc------cCCCCCCCcEEEcCCCC
Q psy8029          96 YFDGLHFVKHILLSHNKEITGLHKD----IFKGTPQLESLNLRGNSITEL----YSG------VFQYVPKLQVLDLGSND  161 (693)
Q Consensus        96 ~~~~l~~L~~L~Ls~n~~i~~~~~~----~~~~l~~L~~L~L~~n~i~~~----~~~------~~~~l~~L~~L~Ls~n~  161 (693)
                      .+..+++|++|+|++| .++.....    .+..+++|++|+|++|.+..+    |..      +|..+++|++|+|++|.
T Consensus        27 ~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            3444555556666655 55543222    244555566666655433321    111      12455556666666555


Q ss_pred             CCc----cChhhhCCCCCCCEEEccCCCCCCCChhhcC----CC---------CCCcEEECcCCCCCcCCC----CcCCC
Q psy8029         162 VAY----MDPEIFKNLTSLRILNLDHNQLINLTRAIFN----NV---------PNLRSLDISGNNISILPS----GVFSD  220 (693)
Q Consensus       162 l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l---------~~L~~L~L~~n~i~~~~~----~~~~~  220 (693)
                      +..    ..+..+..+++|++|+|++|.++......+.    .+         ++|++|++++|.++....    ..+..
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence            554    1233445555666666666555433222222    12         455555555555541110    12334


Q ss_pred             CCCCcEEEcCCCcccc-----CChhhhhcccCceEEEEecCCCcc---cccCccccCCCCCccEEEcCCCCCcccCc---
Q psy8029         221 LRKLQTFYANSNRFQM-----FPKDLFAEMKYLQVIKISYHKDSL---KELPSGLFANLPLLNTVILGESSIAELPS---  289 (693)
Q Consensus       221 l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~---~~i~~~~~~~l~~L~~L~l~~n~l~~~~~---  289 (693)
                      +++|++|++++|.++.     +.+..+..+++|++|++++|.+..   ..++. .+..+++|+.|++++|.++....   
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l  264 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARGAAAV  264 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCchhhHHHH
Confidence            4455555555554441     111123344444444444444210   12222 23444455555555554443210   


Q ss_pred             -ccc--cCCCCccEEEecCCCCCCc-----CChhhhcCCCCCcEEEccCCCCCC
Q psy8029         290 -DLF--WNSTNITNIVLTGHKKLTS-----LPSTLFRDCKKLVKLELQRNKLKY  335 (693)
Q Consensus       290 -~~~--~~~~~L~~L~l~~n~~l~~-----l~~~~~~~~~~L~~L~l~~n~l~~  335 (693)
                       ..+  ..+++|+.|++++| .++.     ++..++.++++|++|++++|.++.
T Consensus       265 ~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          265 VDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence             111  11444444444444 3433     333333334444444444444443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.81  E-value=2.9e-21  Score=204.75  Aligned_cols=139  Identities=26%  Similarity=0.302  Sum_probs=66.8

Q ss_pred             CCCcEEEccCCCCCC--CCh--hhhccCccCceEeccCCcCcc------cc-CccCCCCCCeEeCCCCccc----ccccc
Q psy8029         321 KKLVKLELQRNKLKY--LPE--NLFESLKELYTLNLKNNQLEN------IT-SLVGLSGLNSLDLSWNQLE----QINLI  385 (693)
Q Consensus       321 ~~L~~L~l~~n~l~~--~~~--~~~~~~~~L~~L~Ls~n~l~~------l~-~~~~l~~L~~L~Ls~n~l~----~~~~~  385 (693)
                      ++|++|++++|.++.  ++.  ..+..+++|++|++++|+++.      ++ ....+++|++|+|++|.++    ...+.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            566666666666542  221  234455566666666665552      22 2244555566666666554    22233


Q ss_pred             ccCCCCCCcEEECCCCcCcccccccCCCCc--cCCCCCcEEECCCCCCCc----CChhHH-hcCCCCcEEECCCCCCccC
Q psy8029         386 AFDGLSSLNTVDLSHNLLTFDEYQYGYSPL--KQCVNLETINLSYNRISS----LFDDWI-SSMTSLKELDLRHNNFSFI  458 (693)
Q Consensus       386 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--~~l~~L~~L~Ls~n~l~~----~~~~~~-~~l~~L~~L~L~~N~l~~~  458 (693)
                      .+..+++|++|+|++|.++..+....+..+  ..+++|++|+|++|.+++    ..+..+ .++++|+.|++++|++++.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            445555555555555555533111111222  224555555555555554    122223 3455555555555555544


Q ss_pred             C
Q psy8029         459 P  459 (693)
Q Consensus       459 ~  459 (693)
                      .
T Consensus       319 ~  319 (386)
T 2ca6_A          319 D  319 (386)
T ss_dssp             S
T ss_pred             h
Confidence            3

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=4.1e-19  Score=170.72  Aligned_cols=174  Identities=24%  Similarity=0.381  Sum_probs=125.5

Q ss_pred             cEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEc
Q psy8029          78 NTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDL  157 (693)
Q Consensus        78 ~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  157 (693)
                      +.++.+++  .++.++...   .++|++|++++| .++.++...|.++++|++|++++|+++.++...|..+++|++|++
T Consensus        10 ~~v~c~~~--~l~~~p~~~---~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L   83 (208)
T 2o6s_A           10 TTVECYSQ--GRTSVPTGI---PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL   83 (208)
T ss_dssp             TEEECCSS--CCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEEecCC--CccCCCCCC---CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence            45566665  666666322   357778888888 777777777777788888888888877777777777788888888


Q ss_pred             CCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccC
Q psy8029         158 GSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMF  237 (693)
Q Consensus       158 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  237 (693)
                      ++|.++.+++..|..+++|++|++++|+++++++..|..+++|++|++++|.++.+++..|..+++|+.|++++|.+.. 
T Consensus        84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-  162 (208)
T 2o6s_A           84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-  162 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred             CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-
Confidence            8887777777777777888888888887777777767777788888888887777777777777777777777776542 


Q ss_pred             ChhhhhcccCceEEEEecCCCcccccCc
Q psy8029         238 PKDLFAEMKYLQVIKISYHKDSLKELPS  265 (693)
Q Consensus       238 ~~~~~~~~~~L~~L~l~~n~~~~~~i~~  265 (693)
                            .++.|+.|+++.|.+.+ .+|+
T Consensus       163 ------~~~~l~~L~~~~n~~~g-~ip~  183 (208)
T 2o6s_A          163 ------TCPGIRYLSEWINKHSG-VVRN  183 (208)
T ss_dssp             ------CTTTTHHHHHHHHHCTT-TBBC
T ss_pred             ------CCCCHHHHHHHHHhCCc-eeec
Confidence                  34566666666665433 4444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=3.8e-19  Score=170.98  Aligned_cols=170  Identities=27%  Similarity=0.388  Sum_probs=139.0

Q ss_pred             cEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccC
Q psy8029         104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH  183 (693)
Q Consensus       104 ~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  183 (693)
                      +.++++++ +++.++...   .++|++|++++|.++.++...|..+++|++|++++|.++.+++..|..+++|++|++++
T Consensus        10 ~~v~c~~~-~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQ-GRTSVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSS-CCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCC-CccCCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            57788888 888887654   45789999999998888888888889999999999988888888888889999999999


Q ss_pred             CCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCccccc
Q psy8029         184 NQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKEL  263 (693)
Q Consensus       184 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i  263 (693)
                      |+++++++..|..+++|++|++++|.++.+++..|..+++|++|++++|.++.++...|..+++|++|++++|.+     
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-----  160 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW-----  160 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB-----
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe-----
Confidence            988888887788888999999999988888888788888888888888888888877777888888888888762     


Q ss_pred             CccccCCCCCccEEEcCCCCCcc
Q psy8029         264 PSGLFANLPLLNTVILGESSIAE  286 (693)
Q Consensus       264 ~~~~~~~l~~L~~L~l~~n~l~~  286 (693)
                          ...++.|+.|++..|.+++
T Consensus       161 ----~~~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          161 ----DCTCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             ----CCCTTTTHHHHHHHHHCTT
T ss_pred             ----ecCCCCHHHHHHHHHhCCc
Confidence                2345667777776666654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.79  E-value=3.5e-18  Score=181.32  Aligned_cols=322  Identities=16%  Similarity=0.295  Sum_probs=188.6

Q ss_pred             CccCCCCccCCCcc-cccEEEccCCcCcccccccccCCCCCCcEEEeeCCc---ccccCcccCCCCCCCcEEEcCCCCCC
Q psy8029          88 NVGVLSPPYFDGLH-FVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNS---ITELYSGVFQYVPKLQVLDLGSNDVA  163 (693)
Q Consensus        88 ~i~~l~~~~~~~l~-~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~  163 (693)
                      .++.|...+|.++. .|+.+.+..  .++.|...+|.+|.+|+.+.+..+.   ++.++..+|.+|.+|+.+.+..+ ++
T Consensus        50 ~Vt~Ig~~aF~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~  126 (394)
T 4gt6_A           50 PVSKIGDRVFCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT  126 (394)
T ss_dssp             EEEEECTTTTTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS
T ss_pred             eeeEcCHhhccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc
Confidence            45677778888774 588888876  4888888888888888888887653   66677888888888888777654 67


Q ss_pred             ccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhh
Q psy8029         164 YMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFA  243 (693)
Q Consensus       164 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  243 (693)
                      .+...+|..+.+|+.+.+.. .+..+...+|..+.+|+.+.+..+ ++.+...+|.+ ..|+.+.+..+ +..+...+|.
T Consensus       127 ~I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af~  202 (394)
T 4gt6_A          127 EIDSEAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VTRIGTNAFS  202 (394)
T ss_dssp             EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CCEECTTTTT
T ss_pred             eehhhhhhhhcccccccccc-eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc-ccccccchhh
Confidence            77777788888888888864 356667777888888888887654 66677777764 46777777653 4556666677


Q ss_pred             cccCceEEEEecCCCcccccCccccC-------------CCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCC
Q psy8029         244 EMKYLQVIKISYHKDSLKELPSGLFA-------------NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT  310 (693)
Q Consensus       244 ~~~~L~~L~l~~n~~~~~~i~~~~~~-------------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~  310 (693)
                      .+..++........  ...+....+.             ....+..+.+. +.+..+...+|.++..|+.+.+..  .+.
T Consensus       203 ~c~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~--~~~  277 (394)
T 4gt6_A          203 ECFALSTITSDSES--YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPD--SVV  277 (394)
T ss_dssp             TCTTCCEEEECCSS--SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCT--TCC
T ss_pred             hccccceecccccc--cccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEeccc--ccc
Confidence            77777777665443  1122222111             11222333332 223444455555556666655544  234


Q ss_pred             cCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCC
Q psy8029         311 SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGL  390 (693)
Q Consensus       311 ~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  390 (693)
                      .++..+|.+++.|+.+.+. +.++.++..+|.+|.+|+.+.+..+                       ++.+...+|.+|
T Consensus       278 ~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-----------------------v~~I~~~aF~~C  333 (394)
T 4gt6_A          278 SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-----------------------ITQILDDAFAGC  333 (394)
T ss_dssp             EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-----------------------CCEECTTTTTTC
T ss_pred             eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-----------------------ccEehHhHhhCC
Confidence            4555555555666665554 3445555555555555555555432                       444444555555


Q ss_pred             CCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCC
Q psy8029         391 SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHN  453 (693)
Q Consensus       391 ~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  453 (693)
                      .+|+.+.+..+ ++..    +..+|.+|++|+.+++.++...   ...+..+.+|+.+.+..+
T Consensus       334 ~~L~~i~ip~s-v~~I----~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          334 EQLERIAIPSS-VTKI----PESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             TTCCEEEECTT-CCBC----CGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC--------
T ss_pred             CCCCEEEECcc-cCEE----hHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCC
Confidence            55555555432 3322    2445555555555555554321   122344555555555444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.79  E-value=6.5e-20  Score=190.49  Aligned_cols=209  Identities=19%  Similarity=0.178  Sum_probs=105.6

Q ss_pred             CCCCccEEEcCCCCCccc-CcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCC-CCCCC-ChhhhccCcc
Q psy8029         270 NLPLLNTVILGESSIAEL-PSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN-KLKYL-PENLFESLKE  346 (693)
Q Consensus       270 ~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~~~~  346 (693)
                      .+++|++|++++|.+... .+..+..+++|++|++++| .++......+..+++|++|++++| .++.. ....+..+++
T Consensus        91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~  169 (336)
T 2ast_B           91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  169 (336)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence            344555555555544331 2233444555555555555 343322233445556666666665 44421 1222455566


Q ss_pred             CceEeccCC-cCcc--ccCc-cCCC-CCCeEeCCCC--ccc-cccccccCCCCCCcEEECCCCc-CcccccccCCCCccC
Q psy8029         347 LYTLNLKNN-QLEN--ITSL-VGLS-GLNSLDLSWN--QLE-QINLIAFDGLSSLNTVDLSHNL-LTFDEYQYGYSPLKQ  417 (693)
Q Consensus       347 L~~L~Ls~n-~l~~--l~~~-~~l~-~L~~L~Ls~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~  417 (693)
                      |++|++++| .+++  ++.. ..++ +|++|++++|  .++ +..+..+..+++|++|++++|. ++..    ....+..
T Consensus       170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~----~~~~l~~  245 (336)
T 2ast_B          170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND----CFQEFFQ  245 (336)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG----GGGGGGG
T ss_pred             CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH----HHHHHhC
Confidence            666666666 5554  2322 4455 6666666666  333 2223344556666666666666 4433    2334556


Q ss_pred             CCCCcEEECCCCC-CCcCChhHHhcCCCCcEEECCCCCCccCCCcccccC-CCccEEECCCCCCceeeccch
Q psy8029         418 CVNLETINLSYNR-ISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIV-SNKLTLDLSFNQIAIVDLRTL  487 (693)
Q Consensus       418 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~  487 (693)
                      +++|++|++++|. ++......+..+++|+.|++++| ++   ...+..+ ..+..|++++|+++++.+..+
T Consensus       246 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          246 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred             CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCcc
Confidence            6667777776663 32222224556677777777766 22   2222222 224555567777776554443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=1.6e-18  Score=167.91  Aligned_cols=153  Identities=26%  Similarity=0.386  Sum_probs=122.5

Q ss_pred             cEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEc
Q psy8029          78 NTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDL  157 (693)
Q Consensus        78 ~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  157 (693)
                      +.++++++  .++.++.. +.  ++|++|++++| .|+.+++..|.++++|++|+|++|.++.+.+..|.++++|++|+|
T Consensus        14 ~~v~c~~~--~l~~iP~~-l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L   87 (220)
T 2v9t_B           14 NIVDCRGK--GLTEIPTN-LP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL   87 (220)
T ss_dssp             TEEECTTS--CCSSCCSS-CC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC
T ss_pred             CEEEcCCC--CcCcCCCc-cC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC
Confidence            46677776  77777743 22  57888888888 888888877888888888888888888877777888888888888


Q ss_pred             CCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcccc
Q psy8029         158 GSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM  236 (693)
Q Consensus       158 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~  236 (693)
                      ++|.++.+++..|..+++|++|+|++|+++++.+..|..+++|++|+|++|.++.+++..|..+++|+.|++++|.+..
T Consensus        88 s~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           88 YGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            8888888888778888888888888888888877778888888888888888888887778888888888888887763

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=1.5e-19  Score=183.27  Aligned_cols=173  Identities=25%  Similarity=0.380  Sum_probs=91.0

Q ss_pred             CCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCC
Q psy8029          97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSL  176 (693)
Q Consensus        97 ~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  176 (693)
                      +..+++|++|++++| .++.++.  +..+++|++|++++|+++++++  +..+++|++|++++|.++.++.  +..+++|
T Consensus        42 ~~~l~~L~~L~l~~~-~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L  114 (291)
T 1h6t_A           42 QNELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKL  114 (291)
T ss_dssp             HHHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTC
T ss_pred             hhhcCcccEEEccCC-CcccChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh--hccCCCC
Confidence            344555666666665 5555532  4555556666666665555544  4555566666666555555432  5555555


Q ss_pred             CEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecC
Q psy8029         177 RILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYH  256 (693)
Q Consensus       177 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  256 (693)
                      ++|++++|+++++.  .+..+++|++|++++|.++.+  ..+..+++|+.|++++|.++.+++  +..+++|+.|++++|
T Consensus       115 ~~L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          115 KSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN  188 (291)
T ss_dssp             CEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence            55555555555542  245555555555555555554  234555555555555555554443  444555555555555


Q ss_pred             CCcccccCccccCCCCCccEEEcCCCCCcc
Q psy8029         257 KDSLKELPSGLFANLPLLNTVILGESSIAE  286 (693)
Q Consensus       257 ~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~  286 (693)
                      .  ++.++.  +..+++|+.|++++|.+..
T Consensus       189 ~--i~~l~~--l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          189 H--ISDLRA--LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             C--CCBCGG--GTTCTTCSEEEEEEEEEEC
T ss_pred             c--CCCChh--hccCCCCCEEECcCCcccC
Confidence            4  223332  4444555555555544443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=8e-19  Score=183.83  Aligned_cols=174  Identities=26%  Similarity=0.376  Sum_probs=136.6

Q ss_pred             cEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccC-CCCCCcEEEeeCCcccccCcccCCCCCCCcEEE
Q psy8029          78 NTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK-GTPQLESLNLRGNSITELYSGVFQYVPKLQVLD  156 (693)
Q Consensus        78 ~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  156 (693)
                      +.++++++  .++.++....   +.++.|+|++| .|+.++...|. ++++|++|+|++|+|+.+++..|.++++|++|+
T Consensus        21 ~~l~c~~~--~l~~iP~~~~---~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   94 (361)
T 2xot_A           21 NILSCSKQ--QLPNVPQSLP---SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD   94 (361)
T ss_dssp             TEEECCSS--CCSSCCSSCC---TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CEEEeCCC--CcCccCccCC---CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence            56777777  7887774322   45788888888 88888887777 788888888888888888877788888888888


Q ss_pred             cCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcC---CCCCCCcEEEcCCCc
Q psy8029         157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVF---SDLRKLQTFYANSNR  233 (693)
Q Consensus       157 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~---~~l~~L~~L~l~~n~  233 (693)
                      |++|.++.+++..|..+++|++|+|++|+++.+.+..|..+++|++|+|++|.++.++...|   ..+++|+.|++++|.
T Consensus        95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A           95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            88888888888778888888888888888888877778888888888888888888877766   457888888888888


Q ss_pred             cccCChhhhhcccCc--eEEEEecCC
Q psy8029         234 FQMFPKDLFAEMKYL--QVIKISYHK  257 (693)
Q Consensus       234 l~~~~~~~~~~~~~L--~~L~l~~n~  257 (693)
                      ++.++...|..++.+  +.|++++|.
T Consensus       175 l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          175 LKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             CCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             CCccCHHHhhhccHhhcceEEecCCC
Confidence            888887777766653  666666665

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=9.1e-19  Score=177.40  Aligned_cols=174  Identities=23%  Similarity=0.377  Sum_probs=155.0

Q ss_pred             CcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCC
Q psy8029          73 NITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKL  152 (693)
Q Consensus        73 ~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  152 (693)
                      .++.|+.|+++++  .++.++  .+..+++|++|++++| .++++++  +.++++|++|++++|.++.++.  +..+++|
T Consensus        44 ~l~~L~~L~l~~~--~i~~~~--~~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L  114 (291)
T 1h6t_A           44 ELNSIDQIIANNS--DIKSVQ--GIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKL  114 (291)
T ss_dssp             HHHTCCEEECTTS--CCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTC
T ss_pred             hcCcccEEEccCC--CcccCh--hHhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCCcCCCChh--hccCCCC
Confidence            3567999999999  998886  5889999999999999 9999887  8999999999999999988765  7899999


Q ss_pred             cEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCC
Q psy8029         153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSN  232 (693)
Q Consensus       153 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n  232 (693)
                      ++|++++|.+.+++  .+..+++|++|++++|+++++  ..+..+++|++|++++|.++.+++  +..+++|+.|++++|
T Consensus       115 ~~L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          115 KSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN  188 (291)
T ss_dssp             CEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence            99999999999873  478999999999999999988  458899999999999999999876  889999999999999


Q ss_pred             ccccCChhhhhcccCceEEEEecCCCcccccCc
Q psy8029         233 RFQMFPKDLFAEMKYLQVIKISYHKDSLKELPS  265 (693)
Q Consensus       233 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~  265 (693)
                      .++.++.  +..+++|+.|++++|+  +...+.
T Consensus       189 ~i~~l~~--l~~l~~L~~L~l~~n~--i~~~~~  217 (291)
T 1h6t_A          189 HISDLRA--LAGLKNLDVLELFSQE--CLNKPI  217 (291)
T ss_dssp             CCCBCGG--GTTCTTCSEEEEEEEE--EECCCE
T ss_pred             cCCCChh--hccCCCCCEEECcCCc--ccCCcc
Confidence            9998864  7899999999999998  434443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=4.2e-18  Score=164.87  Aligned_cols=153  Identities=28%  Similarity=0.447  Sum_probs=127.3

Q ss_pred             cEEEeecCCCCccCCCCccCCCcccccEEEccCCcCccccc-ccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEE
Q psy8029          78 NTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLH-KDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD  156 (693)
Q Consensus        78 ~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  156 (693)
                      +.++++++  .++.++.. +  ...+++|++++| .++.++ ...|.++++|++|++++|.++.+++..|.++++|++|+
T Consensus        14 ~~l~~s~n--~l~~iP~~-~--~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   87 (220)
T 2v70_A           14 TTVDCSNQ--KLNKIPEH-I--PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL   87 (220)
T ss_dssp             TEEECCSS--CCSSCCSC-C--CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CEeEeCCC--CcccCccC-C--CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence            57888887  88888743 2  235678889988 888874 45678888899999988888888887888888899999


Q ss_pred             cCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcccc
Q psy8029         157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM  236 (693)
Q Consensus       157 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~  236 (693)
                      +++|.++++++..|..+++|++|+|++|+++++.+..|..+++|++|++++|+++.+++..|..+++|+.|++++|.+..
T Consensus        88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            98888888888888888888889988888888888888888888888888888888888888888888888888888763

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.77  E-value=1.5e-17  Score=176.40  Aligned_cols=336  Identities=16%  Similarity=0.252  Sum_probs=236.1

Q ss_pred             CcccccccccCCCC-CCcEEEeeCCcccccCcccCCCCCCCcEEEcCCC---CCCccChhhhCCCCCCCEEEccCCCCCC
Q psy8029         113 EITGLHKDIFKGTP-QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSN---DVAYMDPEIFKNLTSLRILNLDHNQLIN  188 (693)
Q Consensus       113 ~i~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n---~l~~~~~~~~~~l~~L~~L~L~~n~l~~  188 (693)
                      .++.|+..+|.+++ .|+.+.+.. .++.|...+|.+|.+|+.+.+..+   .++.+...+|.++.+|+.+.+..+ ++.
T Consensus        50 ~Vt~Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~  127 (394)
T 4gt6_A           50 PVSKIGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE  127 (394)
T ss_dssp             EEEEECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred             eeeEcCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence            46788889999885 599999975 488899999999999999999765   478888899999999999888764 778


Q ss_pred             CChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCcccc
Q psy8029         189 LTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLF  268 (693)
Q Consensus       189 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~  268 (693)
                      +...+|..+.+|+.+.+.. .+..+...+|..+..|+.+.+..+ ++.+...+|.. ..|+.+.+..+   ...+...+|
T Consensus       128 I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~---~~~i~~~af  201 (394)
T 4gt6_A          128 IDSEAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK---VTRIGTNAF  201 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT---CCEECTTTT
T ss_pred             ehhhhhhhhcccccccccc-eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc---ccccccchh
Confidence            8888899999999999974 467788888999999999998764 67788888864 57888888765   346667778


Q ss_pred             CCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCc
Q psy8029         269 ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY  348 (693)
Q Consensus       269 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~  348 (693)
                      ..+..++...........+....+............            +.....+..+.+.. .++.+...+|..+..|+
T Consensus       202 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~  268 (394)
T 4gt6_A          202 SECFALSTITSDSESYPAIDNVLYEKSANGDYALIR------------YPSQREDPAFKIPN-GVARIETHAFDSCAYLA  268 (394)
T ss_dssp             TTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEE------------CCTTCCCSEEECCT-TEEEECTTTTTTCSSCC
T ss_pred             hhccccceecccccccccccceeecccccccccccc------------cccccccceEEcCC-cceEcccceeeeccccc
Confidence            888888888877665555443333322211111110            11122333333322 23344455566666666


Q ss_pred             eEeccCCcCccccCc--cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEEC
Q psy8029         349 TLNLKNNQLENITSL--VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL  426 (693)
Q Consensus       349 ~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~L  426 (693)
                      .+.+..+. ..+...  .++++|+.+.+. +.+..+...+|.++.+|+.+++..+ ++..    +..+|.+|.+|+.+.+
T Consensus       269 ~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I----~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          269 SVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQI----LDDAFAGCEQLERIAI  341 (394)
T ss_dssp             EEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEE----CTTTTTTCTTCCEEEE
T ss_pred             EEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEe----hHhHhhCCCCCCEEEE
Confidence            66654332 223322  556667777764 4577888889999999999999865 5544    4789999999999999


Q ss_pred             CCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCc
Q psy8029         427 SYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIA  480 (693)
Q Consensus       427 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  480 (693)
                      ..+ ++.+...+|.+|++|+.+++.++....   ..+.....|+.+.+..|.+.
T Consensus       342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          342 PSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID  391 (394)
T ss_dssp             CTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred             Ccc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence            754 888999999999999999999986542   23556778888888776543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=5.2e-18  Score=186.14  Aligned_cols=181  Identities=19%  Similarity=0.329  Sum_probs=105.1

Q ss_pred             cccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEc
Q psy8029         102 FVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNL  181 (693)
Q Consensus       102 ~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  181 (693)
                      +|+.|++++| ++++++...+   ++|++|++++|.++.+|    ..+++|++|++++|.+++++.  +..  +|++|++
T Consensus        60 ~L~~L~Ls~n-~L~~lp~~l~---~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSLPDNLP---PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSS-CCSCCCSCCC---TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEEC
T ss_pred             CccEEEeCCC-CCCccCHhHc---CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEEC
Confidence            6777777777 7777666542   56777777777777666    235667777777777766554  433  6667777


Q ss_pred             cCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCccc
Q psy8029         182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLK  261 (693)
Q Consensus       182 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  261 (693)
                      ++|++++++.    .+++|++|++++|.++.++.    .+++|+.|++++|.++.++.  |.  ++|+.|+++       
T Consensus       128 s~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls-------  188 (571)
T 3cvr_A          128 DNNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVS-------  188 (571)
T ss_dssp             CSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECC-------
T ss_pred             CCCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECc-------
Confidence            7766666544    45666666666666666554    34556666666665555444  22  444444444       


Q ss_pred             ccCccccCCCCCccEEEcCCCCCcccCcccccC-----CCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCC
Q psy8029         262 ELPSGLFANLPLLNTVILGESSIAELPSDLFWN-----STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYL  336 (693)
Q Consensus       262 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~  336 (693)
                                         +|.++.+|.  |..     ...|+.|++++| .++.+|..++. +++|+.|++++|.++..
T Consensus       189 -------------------~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~-l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          189 -------------------TNLLESLPA--VPVRNHHSEETEIFFRCREN-RITHIPENILS-LDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             -------------------SSCCSSCCC--CC--------CCEEEECCSS-CCCCCCGGGGG-SCTTEEEECCSSSCCHH
T ss_pred             -------------------CCCCCchhh--HHHhhhcccccceEEecCCC-cceecCHHHhc-CCCCCEEEeeCCcCCCc
Confidence                               444444443  111     112255666665 55556555443 66666666666666543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=1.7e-17  Score=161.77  Aligned_cols=153  Identities=26%  Similarity=0.418  Sum_probs=126.2

Q ss_pred             ccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEE
Q psy8029          77 INTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD  156 (693)
Q Consensus        77 L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  156 (693)
                      -+.++.+++  .++.++...   .++|++|+|++| .++.+.+..|.++++|++|+|++|+++.++...|..+++|++|+
T Consensus        21 ~~~v~c~~~--~l~~ip~~~---~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~   94 (229)
T 3e6j_A           21 GTTVDCRSK--RHASVPAGI---PTNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD   94 (229)
T ss_dssp             TTEEECTTS--CCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCEeEccCC--CcCccCCCC---CCCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence            456777777  788777432   278888888888 88888888888888888888888888888888888888888888


Q ss_pred             cCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcccc
Q psy8029         157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM  236 (693)
Q Consensus       157 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~  236 (693)
                      |++|.++.+++..|..+++|++|++++|+++.++.. +..+++|++|++++|+++.+++..|..+++|+.|++++|.+..
T Consensus        95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTT-GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CCCCcCCccChhHhCcchhhCeEeccCCcccccCcc-cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            888888888888888888888888888888877543 5788888888888888888888778888888888888888774

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=7.4e-19  Score=195.12  Aligned_cols=175  Identities=25%  Similarity=0.382  Sum_probs=88.9

Q ss_pred             CCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCC
Q psy8029          97 FDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSL  176 (693)
Q Consensus        97 ~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  176 (693)
                      +..+++|+.|++++| .+..++.  +..+++|+.|+|++|.++++++  |..+++|+.|+|++|.+..++  .+..+++|
T Consensus        39 ~~~L~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L  111 (605)
T 1m9s_A           39 QNELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKL  111 (605)
T ss_dssp             HHHHTTCCCCBCTTC-CCCCCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTC
T ss_pred             hhcCCCCCEEECcCC-CCCCChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCC
Confidence            344455555555555 5555442  4455555555555555555443  445555555555555555443  24555555


Q ss_pred             CEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecC
Q psy8029         177 RILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYH  256 (693)
Q Consensus       177 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  256 (693)
                      ++|+|++|++.+++  .+..+++|+.|+|++|.++.+  ..+..+++|+.|+|++|.+..+++  +..+++|+.|+|++|
T Consensus       112 ~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          112 KSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             CEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence            55555555555442  244555555555555555554  224455555555555555554443  445555555555555


Q ss_pred             CCcccccCccccCCCCCccEEEcCCCCCcccC
Q psy8029         257 KDSLKELPSGLFANLPLLNTVILGESSIAELP  288 (693)
Q Consensus       257 ~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~  288 (693)
                      .  +..++.  +..+++|+.|++++|.+...|
T Consensus       186 ~--i~~l~~--l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          186 H--ISDLRA--LAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             C--CCBCGG--GTTCTTCSEEECCSEEEECCC
T ss_pred             C--CCCChH--HccCCCCCEEEccCCcCcCCc
Confidence            4  223321  445555555555555554443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=9.2e-18  Score=186.32  Aligned_cols=177  Identities=30%  Similarity=0.402  Sum_probs=129.1

Q ss_pred             cCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccC
Q psy8029         268 FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKEL  347 (693)
Q Consensus       268 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  347 (693)
                      +..+++|+.|++++|.+..++.  +..+++|+.|++++| .+..+++  +..+++|+.|++++|.++.++.  +..+++|
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L  111 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKL  111 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCCCTT--STTCTTC
T ss_pred             hhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCCCCCCChh--hccCCCC
Confidence            3456777888888887777753  567778888888877 7777666  5677788888888887777663  6677778


Q ss_pred             ceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECC
Q psy8029         348 YTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLS  427 (693)
Q Consensus       348 ~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls  427 (693)
                      +.|+|++|+++.++....+++|+.|+|++|.++++  ..+..+++|+.|+|++|.++..      .++..+++|+.|+|+
T Consensus       112 ~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~------~~l~~l~~L~~L~Ls  183 (605)
T 1m9s_A          112 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI------VPLAGLTKLQNLYLS  183 (605)
T ss_dssp             CEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC------GGGTTCTTCCEEECC
T ss_pred             CEEEecCCCCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc------hhhccCCCCCEEECc
Confidence            88888888777776667777777888877777776  4567777777777777777743      226777777777777


Q ss_pred             CCCCCcCChhHHhcCCCCcEEECCCCCCccCCCc
Q psy8029         428 YNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQ  461 (693)
Q Consensus       428 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  461 (693)
                      +|.+++++  .+..+++|+.|+|++|++.+.+..
T Consensus       184 ~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~  215 (605)
T 1m9s_A          184 KNHISDLR--ALAGLKNLDVLELFSQECLNKPIN  215 (605)
T ss_dssp             SSCCCBCG--GGTTCTTCSEEECCSEEEECCCCC
T ss_pred             CCCCCCCh--HHccCCCCCEEEccCCcCcCCccc
Confidence            77777763  367777777777777777766544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=3.4e-18  Score=170.32  Aligned_cols=174  Identities=20%  Similarity=0.244  Sum_probs=123.4

Q ss_pred             HHHhhhcCcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCccc
Q psy8029          66 ISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGV  145 (693)
Q Consensus        66 ~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~  145 (693)
                      .+++....+..+..++++++  .++++.  .+..+++|++|++++| .++.++  .+..+++|++|++++|.++++++  
T Consensus        10 ~~~~pd~~l~~l~~l~l~~~--~i~~~~--~~~~l~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--   80 (263)
T 1xeu_A           10 NQVFPDPGLANAVKQNLGKQ--SVTDLV--SQKELSGVQNFNGDNS-NIQSLA--GMQFFTNLKELHLSHNQISDLSP--   80 (263)
T ss_dssp             HHHCCSHHHHHHHHHHHTCS--CTTSEE--CHHHHTTCSEEECTTS-CCCCCT--TGGGCTTCCEEECCSSCCCCCGG--
T ss_pred             HHhCCCHHHHHHHHHHhcCC--Cccccc--chhhcCcCcEEECcCC-Ccccch--HHhhCCCCCEEECCCCccCCChh--
Confidence            34433334555666677766  676666  5677778888888887 777776  36777788888888888777765  


Q ss_pred             CCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCc
Q psy8029         146 FQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQ  225 (693)
Q Consensus       146 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  225 (693)
                      |..+++|++|++++|.++++++  +.. ++|++|++++|+++++.  .+..+++|++|++++|++++++  .+..+++|+
T Consensus        81 l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~  153 (263)
T 1xeu_A           81 LKDLTKLEELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLE  153 (263)
T ss_dssp             GTTCSSCCEEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCC
T ss_pred             hccCCCCCEEECCCCccCCcCc--ccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCC
Confidence            6777888888888887777654  233 77888888888777763  3677777788888777777764  366777777


Q ss_pred             EEEcCCCccccCChhhhhcccCceEEEEecCC
Q psy8029         226 TFYANSNRFQMFPKDLFAEMKYLQVIKISYHK  257 (693)
Q Consensus       226 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  257 (693)
                      .|++++|.++.+  ..+..+++|+.|++++|.
T Consensus       154 ~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          154 VLDLHGNEITNT--GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             EEECTTSCCCBC--TTSTTCCCCCEEEEEEEE
T ss_pred             EEECCCCcCcch--HHhccCCCCCEEeCCCCc
Confidence            777777777766  336667777777777776

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=3.1e-17  Score=155.96  Aligned_cols=151  Identities=17%  Similarity=0.211  Sum_probs=93.7

Q ss_pred             CCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCC
Q psy8029          98 DGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLR  177 (693)
Q Consensus        98 ~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  177 (693)
                      +.+++|++|++++| .++.++  .+..+++|++|++++|.++.++  .+..+++|++|++++|.+++..+..+..+++|+
T Consensus        41 ~~l~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANI-NVTDLT--GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESS-CCSCCT--TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCC-CccChH--HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            45566666666666 666555  2556666666666666555443  255666666666666666654444566666666


Q ss_pred             EEEccCCCCCCCChhhcCCCCCCcEEECcCCC-CCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecC
Q psy8029         178 ILNLDHNQLINLTRAIFNNVPNLRSLDISGNN-ISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYH  256 (693)
Q Consensus       178 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  256 (693)
                      +|++++|++++..+..++.+++|++|++++|. ++.++  .+..+++|++|++++|.++.++  .+..+++|++|++++|
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCc
Confidence            66666666665555556666666666666665 55554  3566666666666666666655  3566667777777766


Q ss_pred             C
Q psy8029         257 K  257 (693)
Q Consensus       257 ~  257 (693)
                      +
T Consensus       192 ~  192 (197)
T 4ezg_A          192 T  192 (197)
T ss_dssp             -
T ss_pred             c
Confidence            5

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=1.9e-17  Score=157.44  Aligned_cols=153  Identities=20%  Similarity=0.280  Sum_probs=126.6

Q ss_pred             CcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCC
Q psy8029          73 NITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKL  152 (693)
Q Consensus        73 ~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  152 (693)
                      .++.|+.|+++++  .++.++  .+..+++|++|++++| .++.++  .+..+++|++|++++|.++......|+.+++|
T Consensus        42 ~l~~L~~L~l~~n--~i~~l~--~l~~l~~L~~L~l~~n-~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           42 QMNSLTYITLANI--NVTDLT--GIEYAHNIKDLTINNI-HATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             HHHTCCEEEEESS--CCSCCT--TGGGCTTCSEEEEESC-CCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred             hcCCccEEeccCC--CccChH--HHhcCCCCCEEEccCC-CCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence            3567889999998  888777  5888999999999999 888776  47889999999999999987545568889999


Q ss_pred             cEEEcCCCCCCccChhhhCCCCCCCEEEccCCC-CCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCC
Q psy8029         153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ-LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANS  231 (693)
Q Consensus       153 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~  231 (693)
                      ++|++++|.+++..+..+..+++|++|++++|. ++.++  .+..+++|++|++++|.++.++  .+..+++|+.|++++
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECB
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeC
Confidence            999999999988777788899999999999998 77765  4788899999999999998876  478889999999999


Q ss_pred             Ccccc
Q psy8029         232 NRFQM  236 (693)
Q Consensus       232 n~l~~  236 (693)
                      |++..
T Consensus       191 N~i~~  195 (197)
T 4ezg_A          191 QTIGG  195 (197)
T ss_dssp             C----
T ss_pred             cccCC
Confidence            88753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=6.4e-18  Score=168.36  Aligned_cols=168  Identities=21%  Similarity=0.256  Sum_probs=83.8

Q ss_pred             CccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEec
Q psy8029         273 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNL  352 (693)
Q Consensus       273 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  352 (693)
                      ++..++++++.+++++  .+..+++|+.|++++| .++.++  .+..+++|++|++++|.++.++.  +..+++|+.|++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNS-NIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTS-CCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCC-Ccccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            4444555555555444  2344455555555555 455544  13445555555555555555444  445555555555


Q ss_pred             cCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCC
Q psy8029         353 KNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS  432 (693)
Q Consensus       353 s~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  432 (693)
                      ++|++++++.... ++|++|++++|.++++.                              .+..+++|++|++++|+++
T Consensus        93 ~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~------------------------------~l~~l~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A           93 NRNRLKNLNGIPS-ACLSRLFLDNNELRDTD------------------------------SLIHLKNLEILSIRNNKLK  141 (263)
T ss_dssp             CSSCCSCCTTCCC-SSCCEEECCSSCCSBSG------------------------------GGTTCTTCCEEECTTSCCC
T ss_pred             CCCccCCcCcccc-CcccEEEccCCccCCCh------------------------------hhcCcccccEEECCCCcCC
Confidence            5555554444322 44444444444444432                              2444555555555555555


Q ss_pred             cCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCcee
Q psy8029         433 SLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIV  482 (693)
Q Consensus       433 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  482 (693)
                      +++  .+..+++|+.|++++|+++++  ..+..+++|+.|++++|+++..
T Consensus       142 ~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          142 SIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             BCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            542  245555555555555555554  2344555555555555555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.71  E-value=9.9e-16  Score=161.63  Aligned_cols=263  Identities=17%  Similarity=0.279  Sum_probs=155.7

Q ss_pred             CcccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCC
Q psy8029          73 NITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKL  152 (693)
Q Consensus        73 ~~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  152 (693)
                      ....|+.+.+..   .++.|+..+|.+|.+|+.+++..  .++.|+..+|.++ +|+.+.+.. .++.+...+|..+ +|
T Consensus        44 ~~~~i~~v~ip~---~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~L  115 (379)
T 4h09_A           44 DRDRISEVRVNS---GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-DL  115 (379)
T ss_dssp             GGGGCSEEEECT---TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-CC
T ss_pred             cccCCEEEEeCC---CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCc-eeeEeccceeccC-Cc
Confidence            345677888853   78888888888888888888865  4788888888887 577777764 4677888888765 78


Q ss_pred             cEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCC------------CcCCC
Q psy8029         153 QVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPS------------GVFSD  220 (693)
Q Consensus       153 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~------------~~~~~  220 (693)
                      +.+.+..+ +..+...+|.++ +|+.+.+.. .++.+...+|..+..++.+.+..+.......            ..+..
T Consensus       116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (379)
T 4h09_A          116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA  192 (379)
T ss_dssp             SEEECCTT-CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred             ccccCCCc-cccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence            88888754 556666667665 566666654 3566666667777777777776543321111            11223


Q ss_pred             CCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccE
Q psy8029         221 LRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITN  300 (693)
Q Consensus       221 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  300 (693)
                      +..+..+.+... ...+....|..+..|+.+.+..+   ...+...+|.++..|+.+.+..+ ++.+...+|.++.+|+.
T Consensus       193 ~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~---~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~  267 (379)
T 4h09_A          193 AKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG---VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT  267 (379)
T ss_dssp             TCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT---CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred             cccccccccccc-eeEEeecccccccccceeeeccc---eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence            333444433322 22333334445555555555433   23444555555555555555443 44555555555555555


Q ss_pred             EEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEecc
Q psy8029         301 IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK  353 (693)
Q Consensus       301 L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls  353 (693)
                      +.+..  .+..++..+|.+|.+|+.+.+.++.++.++..+|.+|.+|+.+.+.
T Consensus       268 i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          268 LNFYA--KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             EEECC--CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             ccccc--cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            55543  3455555555555555555555555555555555555555555553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.68  E-value=3.4e-15  Score=157.47  Aligned_cols=316  Identities=17%  Similarity=0.239  Sum_probs=205.5

Q ss_pred             cCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCC
Q psy8029          96 YFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTS  175 (693)
Q Consensus        96 ~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  175 (693)
                      .+....+|+.+.+..  +++.|+..+|.+|.+|+.+.+.. .++.|+..+|.++ +|+.+.+..+ ++.+...+|..+ +
T Consensus        41 ~~~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~  114 (379)
T 4h09_A           41 WYKDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-D  114 (379)
T ss_dssp             TGGGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-C
T ss_pred             ccccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeEeccceeccC-C
Confidence            566778899999986  69999999999999999999975 4888999999988 6888888654 778888888775 7


Q ss_pred             CCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEec
Q psy8029         176 LRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISY  255 (693)
Q Consensus       176 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  255 (693)
                      |+.+.+..+ ++.+...+|.++ +++.+.+.. .++.+...+|..+..++.+.+..+....+....+ .          .
T Consensus       115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~-~----------~  180 (379)
T 4h09_A          115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV-L----------Y  180 (379)
T ss_dssp             CSEEECCTT-CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTE-E----------E
T ss_pred             cccccCCCc-cccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccce-e----------c
Confidence            999999864 566666777665 677776654 4667777778888888888776654322111100 0          0


Q ss_pred             CCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCC
Q psy8029         256 HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY  335 (693)
Q Consensus       256 n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~  335 (693)
                      +.  . ......+.....+..+.+... ...+....|..+.+++.+.+..  .+..++..+|.++..|+.+.+..+ ++.
T Consensus       181 ~~--~-~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~~-v~~  253 (379)
T 4h09_A          181 NK--N-KTILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPKN-VTS  253 (379)
T ss_dssp             ET--T-SSEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECTT-CCE
T ss_pred             cc--c-cceeccccccccccccccccc-eeEEeecccccccccceeeecc--ceeEEccccccCCccceEEEcCCC-ccE
Confidence            00  0 001111333344444444322 2334444455566666666644  355555666666666666666554 555


Q ss_pred             CChhhhccCccCceEeccCCcCccccCc--cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCC
Q psy8029         336 LPENLFESLKELYTLNLKNNQLENITSL--VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYS  413 (693)
Q Consensus       336 ~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  413 (693)
                      +...+|..+..|+.+.+..+ ++.++..  .++++|+.+.+.++.++.+...+|.++.+|+.+.+..+ ++..    +..
T Consensus       254 I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I----~~~  327 (379)
T 4h09_A          254 IGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTI----QVY  327 (379)
T ss_dssp             ECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEE----CTT
T ss_pred             eCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEE----HHH
Confidence            66666666666666666432 4444433  56667777777766777777777777777777777644 4444    366


Q ss_pred             CccCCCCCcEEECCCCCCCcCChhHHhcCCCC
Q psy8029         414 PLKQCVNLETINLSYNRISSLFDDWISSMTSL  445 (693)
Q Consensus       414 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  445 (693)
                      +|.+|++|+.+.+..+ ++.+...+|.++..+
T Consensus       328 aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          328 AFKNCKALSTISYPKS-ITLIESGAFEGSSIT  358 (379)
T ss_dssp             TTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred             HhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence            7777888887777654 666666777766433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.67  E-value=5.9e-16  Score=144.35  Aligned_cols=125  Identities=26%  Similarity=0.320  Sum_probs=81.8

Q ss_pred             CCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCcc
Q psy8029         391 SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKL  470 (693)
Q Consensus       391 ~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  470 (693)
                      ++|++|++++|.++..    ....+..+++|++|++++|.++++++..|..+++|+.|++++|+|+++++..+..+++|+
T Consensus        28 ~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~  103 (177)
T 2o6r_A           28 SSATRLELESNKLQSL----PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLK  103 (177)
T ss_dssp             TTCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCcEEEeCCCcccEe----CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccC
Confidence            3455555555555433    133345556666666666666666665566666666666666666666666566666677


Q ss_pred             EEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCC-cHHHHHHHhcc
Q psy8029         471 TLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCS-NYDLIRFVSKK  533 (693)
Q Consensus       471 ~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~-~~~~~~~~~~~  533 (693)
                      .|++++|+++.++...+..+              .+++.+++++|+|.|+|+ +.|+..|+...
T Consensus       104 ~L~l~~N~l~~~~~~~~~~l--------------~~L~~L~l~~N~~~~~~~~l~~l~~~~~~~  153 (177)
T 2o6r_A          104 ELALDTNQLKSVPDGIFDRL--------------TSLQKIWLHTNPWDCSCPRIDYLSRWLNKN  153 (177)
T ss_dssp             EEECCSSCCSCCCTTTTTTC--------------TTCCEEECCSSCBCCCHHHHHHHHHHHHHT
T ss_pred             EEECcCCcceEeCHHHhcCC--------------cccCEEEecCCCeeccCccHHHHHHHHhhC
Confidence            77777777766655444433              347899999999999998 67888888764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.66  E-value=6.2e-16  Score=142.91  Aligned_cols=150  Identities=25%  Similarity=0.330  Sum_probs=109.6

Q ss_pred             CcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEE
Q psy8029         393 LNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTL  472 (693)
Q Consensus       393 L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  472 (693)
                      .+.+++++|.++..     +..+  .++|++|+|++|+|+++.+..|..+++|+.|+|++|+|+++++..|..+++|+.|
T Consensus        11 ~~~l~~s~n~l~~i-----p~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L   83 (170)
T 3g39_A           11 GTTVDCSGKSLASV-----PTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL   83 (170)
T ss_dssp             TTEEECTTSCCSSC-----CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCEEEeCCCCcCcc-----CccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence            45677777777643     2222  3678888888888888888888888888888888888888888878888888888


Q ss_pred             ECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCC-cHHHHHHHhcccccceeeeeeeccCceee
Q psy8029         473 DLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCS-NYDLIRFVSKKMTKTVYQMLELVTDNLEC  551 (693)
Q Consensus       473 ~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  551 (693)
                      +|++|+|+.++...+..+              .+++.+++++|||.|+|. +.|+..|+..... .+..........+.|
T Consensus        84 ~L~~N~l~~~~~~~~~~l--------------~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~-~~~~~~~~~~~~~~C  148 (170)
T 3g39_A           84 SLNDNQLKSIPRGAFDNL--------------KSLTHIWLLNNPWDCACSDILYLSRWISQHPG-LVFGYLNLDPDSARC  148 (170)
T ss_dssp             ECCSSCCCCCCTTTTTTC--------------TTCCEEECCSSCBCTTBGGGHHHHHHHHHCGG-GEECSSSBCGGGSBB
T ss_pred             ECCCCccCEeCHHHhcCC--------------CCCCEEEeCCCCCCCCchhHHHHHHHHHhCcc-eeeccccCCccccee
Confidence            888888888877666655              458899999999999995 9999999987522 121111234567788


Q ss_pred             cCCCCccccccCCC
Q psy8029         552 FGNAGVGINSVRPE  565 (693)
Q Consensus       552 ~~~~~~~~~~l~~~  565 (693)
                      ..+ +..+.++...
T Consensus       149 ~~~-~~~~~~~~~~  161 (170)
T 3g39_A          149 SGT-NTPVRAVTEA  161 (170)
T ss_dssp             CC--CCBGGGCCST
T ss_pred             CCC-Cccchhcccc
Confidence            765 4455555443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.63  E-value=2.4e-15  Score=139.38  Aligned_cols=119  Identities=19%  Similarity=0.273  Sum_probs=95.9

Q ss_pred             cEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEE
Q psy8029         394 NTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLD  473 (693)
Q Consensus       394 ~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  473 (693)
                      +.+++++|.++..     +..+  .++|++|+|++|+++++++..|.++++|+.|+|++|+|+++++..|..+++|+.|+
T Consensus        15 ~~l~~~~n~l~~i-----P~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~   87 (174)
T 2r9u_A           15 TLVNCQNIRLASV-----PAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD   87 (174)
T ss_dssp             SEEECCSSCCSSC-----CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cEEEeCCCCCCcc-----CCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence            5677777777643     2222  26788888888888888888888888899999999988888888778888899999


Q ss_pred             CCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCC-cHHHHHHHhcc
Q psy8029         474 LSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCS-NYDLIRFVSKK  533 (693)
Q Consensus       474 L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~-~~~~~~~~~~~  533 (693)
                      |++|+|+.++...+..+              ++++.+++++|||.|+|. +.|+..|+...
T Consensus        88 L~~N~l~~l~~~~~~~l--------------~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~  134 (174)
T 2r9u_A           88 LNDNHLKSIPRGAFDNL--------------KSLTHIYLYNNPWDCECRDIMYLRNWVADH  134 (174)
T ss_dssp             CCSSCCCCCCTTTTTTC--------------TTCSEEECCSSCBCTTBGGGHHHHHHHHHC
T ss_pred             CCCCccceeCHHHhccc--------------cCCCEEEeCCCCcccccccHHHHHHHHHhc
Confidence            99999888877666554              458899999999999996 88999998775

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.63  E-value=1.7e-15  Score=143.20  Aligned_cols=129  Identities=23%  Similarity=0.417  Sum_probs=97.4

Q ss_pred             cEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcc-cCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEcc
Q psy8029         104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSG-VFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD  182 (693)
Q Consensus       104 ~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  182 (693)
                      ++++++++ +++.+|...+   .+|++|++++|.++.+++. .|..+++|++|++++|.++++.+..|..+++|++|+|+
T Consensus        11 ~~l~~s~~-~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGR-GLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTS-CCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCC-CcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            56777777 7777776433   2677777777777776653 46777788888888887777777777778888888888


Q ss_pred             CCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcccc
Q psy8029         183 HNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM  236 (693)
Q Consensus       183 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~  236 (693)
                      +|+++++.+..|.++++|++|++++|+++++.+..|..+++|++|++++|.+..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            888887777777778888888888888887777777778888888888887763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=2.2e-15  Score=142.30  Aligned_cols=127  Identities=28%  Similarity=0.428  Sum_probs=91.6

Q ss_pred             cEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccC
Q psy8029         104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH  183 (693)
Q Consensus       104 ~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  183 (693)
                      +.++++++ +++.+|...+   ++|++|++++|.++.++ ..|.++++|++|++++|.++++++.+|..+++|++|+|++
T Consensus        13 ~~l~~~~~-~l~~ip~~~~---~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNK-GLKVLPKGIP---RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTS-CCSSCCSCCC---TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCC-CCCcCCCCCC---CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            45667766 6776665432   46777777777777666 3467777777777777777777777777777777777777


Q ss_pred             CCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccc
Q psy8029         184 NQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ  235 (693)
Q Consensus       184 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  235 (693)
                      |+++.+.+..|..+++|++|+|++|.++.+++..|..+++|+.|++++|.+.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            7777777777777777777777777777777777777777777777777765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.62  E-value=5.9e-15  Score=137.55  Aligned_cols=132  Identities=27%  Similarity=0.474  Sum_probs=98.0

Q ss_pred             ccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEcc
Q psy8029         103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD  182 (693)
Q Consensus       103 L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  182 (693)
                      .+.++++++ +++.++...   .++|++|++++|.+++++...|..+++|++|++++|.++++++..|..+++|++|+++
T Consensus         9 ~~~l~~~~~-~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSK-GLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSS-CCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCC-CCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            456777777 777766543   2567777777777777777667777777777777777777777777777778888888


Q ss_pred             CCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCC
Q psy8029         183 HNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP  238 (693)
Q Consensus       183 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~  238 (693)
                      +|+++++++..|..+++|++|++++|.++.+++..|..+++|++|++++|.+....
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            88777777776777788888888888888777777777788888888888776443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=1.1e-15  Score=141.22  Aligned_cols=134  Identities=21%  Similarity=0.295  Sum_probs=62.8

Q ss_pred             ccccEEEeecCCCCcc--CCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCC
Q psy8029          75 TTINTLAFSNSPSNVG--VLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKL  152 (693)
Q Consensus        75 ~~L~~L~l~~~~~~i~--~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  152 (693)
                      +.|+.|+++++  .++  .++ ..+..+++|++|++++| .++.+  ..+..+++|++|++++|.++...+..+..+++|
T Consensus        24 ~~L~~L~l~~n--~l~~~~i~-~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           24 AAVRELVLDNC--KSNDGKIE-GLTAEFVNLEFLSLINV-GLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             TSCSEEECCSC--BCBTTBCS-SCCGGGGGCCEEEEESS-CCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             ccCCEEECCCC--CCChhhHH-HHHHhCCCCCEEeCcCC-CCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence            44555555555  444  333 23445555555555555 45444  334445555555555555544333333344555


Q ss_pred             cEEEcCCCCCCccCh-hhhCCCCCCCEEEccCCCCCCCCh---hhcCCCCCCcEEECcCCCCCcCC
Q psy8029         153 QVLDLGSNDVAYMDP-EIFKNLTSLRILNLDHNQLINLTR---AIFNNVPNLRSLDISGNNISILP  214 (693)
Q Consensus       153 ~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~i~~~~  214 (693)
                      ++|++++|.+++++. ..+..+++|++|++++|.++++++   ..+..+++|++|++++|.+..++
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            555555554444432 334444455555555554444443   33444444444444444444433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=1.9e-15  Score=139.54  Aligned_cols=136  Identities=22%  Similarity=0.266  Sum_probs=119.9

Q ss_pred             cccccEEEccCCcCcc--cccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCC
Q psy8029         100 LHFVKHILLSHNKEIT--GLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLR  177 (693)
Q Consensus       100 l~~L~~L~Ls~n~~i~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  177 (693)
                      .++|++|++++| .++  .++. .+..+++|++|++++|.++.+  ..|..+++|++|++++|.+.+..+..+..+++|+
T Consensus        23 ~~~L~~L~l~~n-~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           23 PAAVRELVLDNC-KSNDGKIEG-LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             TTSCSEEECCSC-BCBTTBCSS-CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             cccCCEEECCCC-CCChhhHHH-HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            478999999999 898  5654 478899999999999999888  5588999999999999999986677778899999


Q ss_pred             EEEccCCCCCCCCh-hhcCCCCCCcEEECcCCCCCcCCC---CcCCCCCCCcEEEcCCCccccCCh
Q psy8029         178 ILNLDHNQLINLTR-AIFNNVPNLRSLDISGNNISILPS---GVFSDLRKLQTFYANSNRFQMFPK  239 (693)
Q Consensus       178 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~  239 (693)
                      +|++++|++++++. ..+..+++|++|++++|.++.++.   ..+..+++|++|++++|.+..++.
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            99999999998764 678999999999999999999887   578899999999999999887765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=2.6e-17  Score=181.63  Aligned_cols=108  Identities=22%  Similarity=0.186  Sum_probs=87.6

Q ss_pred             CCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcE
Q psy8029         368 GLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKE  447 (693)
Q Consensus       368 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  447 (693)
                      .|+.|+|++|.+++++.  |+.+++|+.|++++|.++..     +..+..+++|+.|+|++|.+++++  .++.+++|+.
T Consensus       442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~l-----p~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~  512 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRAL-----PPALAALRCLEVLQASDNALENVD--GVANLPRLQE  512 (567)
T ss_dssp             TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCC-----CGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCE
T ss_pred             CceEEEecCCCCCCCcC--ccccccCcEeecCccccccc-----chhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcE
Confidence            58888888888888653  78888888888888888843     567788888888888888888864  5788888888


Q ss_pred             EECCCCCCccCC-CcccccCCCccEEECCCCCCceeec
Q psy8029         448 LDLRHNNFSFIP-DQLDSIVSNKLTLDLSFNQIAIVDL  484 (693)
Q Consensus       448 L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~  484 (693)
                      |+|++|+|++++ +..+..+++|+.|+|++|++++.++
T Consensus       513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            888888888886 6667888888888888888887654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=2e-17  Score=182.46  Aligned_cols=197  Identities=17%  Similarity=0.133  Sum_probs=141.2

Q ss_pred             CCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCC------------CCCcCChhhhcCCCCCcEEE-ccCCCCCCC
Q psy8029         270 NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHK------------KLTSLPSTLFRDCKKLVKLE-LQRNKLKYL  336 (693)
Q Consensus       270 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~------------~l~~l~~~~~~~~~~L~~L~-l~~n~l~~~  336 (693)
                      .++.|+.|++++|.++.+|.. ++.+++|+.|++++|.            .....++..+..+++|+.|+ ++.|.+..+
T Consensus       347 ~~~~L~~L~Ls~n~L~~Lp~~-i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          347 TDEQLFRCELSVEKSTVLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             TTTTSSSCCCCHHHHHHHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             cCccceeccCChhhHHhhHHH-HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            445555555555555555433 2445555555554431            12233344456667777777 555443322


Q ss_pred             Chhh-----hc--cCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccc
Q psy8029         337 PENL-----FE--SLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQ  409 (693)
Q Consensus       337 ~~~~-----~~--~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  409 (693)
                      +...     +.  ....|+.|++++|+++++|....+++|+.|+|++|.++.+ |..|+.+++|+.|+|++|.+++.   
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l---  501 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENV---  501 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCC---
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCCC---
Confidence            2111     11  1235889999999999998888899999999999999966 45889999999999999999964   


Q ss_pred             cCCCCccCCCCCcEEECCCCCCCcCC-hhHHhcCCCCcEEECCCCCCccCCCcc---cccCCCccEEEC
Q psy8029         410 YGYSPLKQCVNLETINLSYNRISSLF-DDWISSMTSLKELDLRHNNFSFIPDQL---DSIVSNKLTLDL  474 (693)
Q Consensus       410 ~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L  474 (693)
                        + .+..+++|++|+|++|.++++. |..+..+++|+.|+|++|+++++++..   +..+++|+.|++
T Consensus       502 --p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          502 --D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             --G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             --c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence              3 7888999999999999999997 888999999999999999999887643   334788888864

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=4.4e-15  Score=134.12  Aligned_cols=125  Identities=24%  Similarity=0.285  Sum_probs=60.1

Q ss_pred             ccccEEEccCCcCcc--cccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCE
Q psy8029         101 HFVKHILLSHNKEIT--GLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI  178 (693)
Q Consensus       101 ~~L~~L~Ls~n~~i~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  178 (693)
                      ++|++|++++| .++  .++. .+..+++|++|++++|.++.+  ..|..+++|++|++++|.+++..+..+..+++|++
T Consensus        17 ~~l~~L~l~~n-~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           17 SDVKELVLDNS-RSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGCSEEECTTC-BCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             ccCeEEEccCC-cCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            44555555555 554  2332 344555555555555555444  23455555555555555555544444444555555


Q ss_pred             EEccCCCCCCCC-hhhcCCCCCCcEEECcCCCCCcCCC---CcCCCCCCCcEEEc
Q psy8029         179 LNLDHNQLINLT-RAIFNNVPNLRSLDISGNNISILPS---GVFSDLRKLQTFYA  229 (693)
Q Consensus       179 L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l  229 (693)
                      |++++|++++++ +..++.+++|++|++++|.++++++   ..+..+++|+.|++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            555555555432 1334444445555555444444443   23344444444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=5.7e-15  Score=137.46  Aligned_cols=133  Identities=17%  Similarity=0.236  Sum_probs=74.2

Q ss_pred             cCCCcccccEEEccCCcCcccccccccCCC-CCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCC
Q psy8029          96 YFDGLHFVKHILLSHNKEITGLHKDIFKGT-PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLT  174 (693)
Q Consensus        96 ~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  174 (693)
                      .+.++.+|++|++++| .++.++.  +..+ ++|++|++++|.++++  ..|..+++|++|++++|.++++++..|..++
T Consensus        14 ~~~~~~~L~~L~l~~n-~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGY-KIPVIEN--LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP   88 (176)
T ss_dssp             EEECTTSCEEEECTTS-CCCSCCC--GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             hcCCcCCceEEEeeCC-CCchhHH--hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence            3455566666666666 6665532  2233 3666666666666665  2356666666666666666666555555666


Q ss_pred             CCCEEEccCCCCCCCCh-hhcCCCCCCcEEECcCCCCCcCCCC---cCCCCCCCcEEEcCCCc
Q psy8029         175 SLRILNLDHNQLINLTR-AIFNNVPNLRSLDISGNNISILPSG---VFSDLRKLQTFYANSNR  233 (693)
Q Consensus       175 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~---~~~~l~~L~~L~l~~n~  233 (693)
                      +|++|++++|+++.++. ..+..+++|++|++++|.++.++..   .+..+++|+.|++++|.
T Consensus        89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            66666666666655443 2345555555555555555544432   23444444444444444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=1.2e-14  Score=131.21  Aligned_cols=127  Identities=18%  Similarity=0.247  Sum_probs=107.0

Q ss_pred             CCCCcEEEeeCCccc--ccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcE
Q psy8029         125 TPQLESLNLRGNSIT--ELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRS  202 (693)
Q Consensus       125 l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  202 (693)
                      .++|++|++++|.++  .++. .|..+++|++|++++|.++++  ..+..+++|++|++++|++++..+..+..+++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            467999999999998  5655 578899999999999999888  56889999999999999999866777777899999


Q ss_pred             EECcCCCCCcCC-CCcCCCCCCCcEEEcCCCccccCCh---hhhhcccCceEEEEe
Q psy8029         203 LDISGNNISILP-SGVFSDLRKLQTFYANSNRFQMFPK---DLFAEMKYLQVIKIS  254 (693)
Q Consensus       203 L~L~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~  254 (693)
                      |++++|.+++++ +..+..+++|++|++++|.++.++.   ..+..+++|+.|+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            999999998864 2557888999999999999888776   567888888888764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.53  E-value=3.6e-15  Score=169.81  Aligned_cols=153  Identities=20%  Similarity=0.204  Sum_probs=113.5

Q ss_pred             CChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc-cCCCCCCeEeCCCCccccccccccCCC
Q psy8029         312 LPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL-VGLSGLNSLDLSWNQLEQINLIAFDGL  390 (693)
Q Consensus       312 l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l  390 (693)
                      ++...|..++.|+.|+|++|.+..++...| .+++|++|+|++|.|+.+|.. ..+++|++|+|++|.|+.+ |..|+.+
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l  292 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL-PAELGSC  292 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSC-CSSGGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCcc-ChhhcCC
Confidence            455567888999999999999998888765 788999999999999988865 7889999999999999965 6678889


Q ss_pred             CCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCC-CcEEECCCCCCccCCCcccccCCCc
Q psy8029         391 SSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTS-LKELDLRHNNFSFIPDQLDSIVSNK  469 (693)
Q Consensus       391 ~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L  469 (693)
                      ++|++|+|++|.++..     +..|..+++|++|+|++|.+++.+|..+..... +..++|++|.+++..+.      .+
T Consensus       293 ~~L~~L~L~~N~l~~l-----p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l  361 (727)
T 4b8c_D          293 FQLKYFYFFDNMVTTL-----PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ER  361 (727)
T ss_dssp             TTCSEEECCSSCCCCC-----CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-
T ss_pred             CCCCEEECCCCCCCcc-----ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------cc
Confidence            9999999999998854     556889999999999999999988887764422 23477888888876554      45


Q ss_pred             cEEECCCC
Q psy8029         470 LTLDLSFN  477 (693)
Q Consensus       470 ~~L~L~~N  477 (693)
                      ..|++++|
T Consensus       362 ~~l~l~~n  369 (727)
T 4b8c_D          362 RFIEINTD  369 (727)
T ss_dssp             --------
T ss_pred             ceeEeecc
Confidence            56677766

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=1.7e-14  Score=134.28  Aligned_cols=108  Identities=21%  Similarity=0.187  Sum_probs=56.5

Q ss_pred             CCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCCh-hHHhcCCCCc
Q psy8029         368 GLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD-DWISSMTSLK  446 (693)
Q Consensus       368 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~  446 (693)
                      +|++|++++|.++++  ..|..+++|++|++++|.++..    .+..+..+++|++|++++|.++.+++ ..+..+++|+
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~  116 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRI----GEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT  116 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEE----CSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCC
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCccccc----CcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCC
Confidence            444444444444443  2444455555555555555433    12223455555555555555554433 2455666666


Q ss_pred             EEECCCCCCccCCCc---ccccCCCccEEECCCCCCce
Q psy8029         447 ELDLRHNNFSFIPDQ---LDSIVSNKLTLDLSFNQIAI  481 (693)
Q Consensus       447 ~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~  481 (693)
                      .|++++|+++.++..   .+..+++|+.||+++|.+..
T Consensus       117 ~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          117 YLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            666666666655443   34556666666666666553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.52  E-value=4.2e-15  Score=169.26  Aligned_cols=154  Identities=22%  Similarity=0.280  Sum_probs=101.2

Q ss_pred             ccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCC
Q psy8029         117 LHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNN  196 (693)
Q Consensus       117 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  196 (693)
                      +++..|..++.|+.|+|++|.+..++...| .+++|++|+|++|.++.++ ..|..+++|++|+|++|+++.++ ..|+.
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSLP-AELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSCC-SSGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCccC-hhhcC
Confidence            445667778888888888888887777655 7888888888888888665 44788888888888888888664 44778


Q ss_pred             CCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhccc-CceEEEEecCCCcccccCccccCCCCCcc
Q psy8029         197 VPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMK-YLQVIKISYHKDSLKELPSGLFANLPLLN  275 (693)
Q Consensus       197 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~~~~~~i~~~~~~~l~~L~  275 (693)
                      +++|++|+|++|.++.++.. |..+++|+.|+|++|.++..++..+..+. .+..+++++|.+.+ .+|       ..++
T Consensus       292 l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~-~~p-------~~l~  362 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI-PLP-------HERR  362 (727)
T ss_dssp             GTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC-CCC-------CC--
T ss_pred             CCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC-cCc-------cccc
Confidence            88888888888888877665 78888888888888888876666654432 22235667776432 222       2455


Q ss_pred             EEEcCCC
Q psy8029         276 TVILGES  282 (693)
Q Consensus       276 ~L~l~~n  282 (693)
                      .|+++.|
T Consensus       363 ~l~l~~n  369 (727)
T 4b8c_D          363 FIEINTD  369 (727)
T ss_dssp             -------
T ss_pred             eeEeecc
Confidence            5566554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.49  E-value=7.7e-14  Score=145.17  Aligned_cols=133  Identities=19%  Similarity=0.321  Sum_probs=97.4

Q ss_pred             EEECCCC-cCcccccccCCCCccCCCCCcEEECCC-CCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEE
Q psy8029         395 TVDLSHN-LLTFDEYQYGYSPLKQCVNLETINLSY-NRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTL  472 (693)
Q Consensus       395 ~L~L~~n-~l~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  472 (693)
                      .++.+++ .++..     +. +..+++|++|+|++ |.++++++..|.++++|+.|+|++|+|+++++..|..+++|+.|
T Consensus        12 ~v~~~~~n~l~~i-----p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L   85 (347)
T 2ifg_A           12 GLRCTRDGALDSL-----HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (347)
T ss_dssp             CEECCSSCCCTTT-----TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             EEEcCCCCCCCcc-----CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence            3455555 56543     33 66667777777775 77777777777778888888888888888777777777888888


Q ss_pred             ECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCceeec
Q psy8029         473 DLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECF  552 (693)
Q Consensus       473 ~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  552 (693)
                      +|++|+|+.++...+..+               .|+.|++++|+|.|+|++.||..|+.....       .+..+.++|.
T Consensus        86 ~l~~N~l~~~~~~~~~~~---------------~L~~l~l~~N~~~c~c~l~~~~~~~~~~~~-------~l~~~~~~C~  143 (347)
T 2ifg_A           86 NLSFNALESLSWKTVQGL---------------SLQELVLSGNPLHCSCALRWLQRWEEEGLG-------GVPEQKLQCH  143 (347)
T ss_dssp             ECCSSCCSCCCSTTTCSC---------------CCCEEECCSSCCCCCGGGHHHHHHHHTTCS-------SCGGGCCCCS
T ss_pred             eCCCCccceeCHHHcccC---------------CceEEEeeCCCccCCCccHHHHHHHHhCcc-------cccccCCCCC
Confidence            888888877766555432               277999999999999999999999876421       2345678887


Q ss_pred             CCC
Q psy8029         553 GNA  555 (693)
Q Consensus       553 ~~~  555 (693)
                      .|.
T Consensus       144 ~~~  146 (347)
T 2ifg_A          144 GQG  146 (347)
T ss_dssp             SSS
T ss_pred             CCh
Confidence            663

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.43  E-value=7.7e-13  Score=122.01  Aligned_cols=107  Identities=28%  Similarity=0.528  Sum_probs=72.0

Q ss_pred             CcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcC
Q psy8029         128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISG  207 (693)
Q Consensus       128 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  207 (693)
                      .+++++++|.++.+|...   .++|++|++++|.++++.+..|..+++|++|+|++|+++++++..|..+++|++|+|++
T Consensus        11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            456666666666666543   25666666666666666666666677777777777777766666666777777777777


Q ss_pred             CCCCcCCCCcCCCCCCCcEEEcCCCccccC
Q psy8029         208 NNISILPSGVFSDLRKLQTFYANSNRFQMF  237 (693)
Q Consensus       208 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  237 (693)
                      |+++.+++..|..+++|++|++++|.+...
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            777777666677777777777777776643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.42  E-value=1.2e-12  Score=121.17  Aligned_cols=107  Identities=23%  Similarity=0.476  Sum_probs=76.1

Q ss_pred             cEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCC
Q psy8029         129 ESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN  208 (693)
Q Consensus       129 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  208 (693)
                      +.+++++|+++.+|...+   ++|++|++++|.++++++..|.++++|++|+|++|+++++++..|..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            566667776666665432   66777777777777776666777777777777777777777666677777777777777


Q ss_pred             CCCcCCCCcCCCCCCCcEEEcCCCccccCC
Q psy8029         209 NISILPSGVFSDLRKLQTFYANSNRFQMFP  238 (693)
Q Consensus       209 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~  238 (693)
                      +++.+++..|..+++|++|++++|.+...+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            777777766777777777777777776544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.34  E-value=4.7e-14  Score=147.27  Aligned_cols=160  Identities=21%  Similarity=0.224  Sum_probs=67.0

Q ss_pred             CCccEEEecCCCCCCcCChhhhc-----CCCCCcEEEccCCCCCCCCh-hhhccCccCceEeccCCcCccccCc------
Q psy8029         296 TNITNIVLTGHKKLTSLPSTLFR-----DCKKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLENITSL------  363 (693)
Q Consensus       296 ~~L~~L~l~~n~~l~~l~~~~~~-----~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~~l~~~------  363 (693)
                      +.|+.|++++| .++......+.     ..++|++|++++|.++.... ..+..+++|+.|+|++|.+++....      
T Consensus        72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            44556666666 44433222111     22456666666665542211 1122344555555555555432111      


Q ss_pred             -cCCCCCCeEeCCCCcccccccc----ccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChh-
Q psy8029         364 -VGLSGLNSLDLSWNQLEQINLI----AFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDD-  437 (693)
Q Consensus       364 -~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-  437 (693)
                       ...++|++|+|++|.+++....    ++..+++|++|+|++|.++..+.......+..+++|++|+|++|.|++.... 
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             1234455555555555432221    2233444555555555544322111122233344444555555444432221 


Q ss_pred             ---HHhcCCCCcEEECCCCCCc
Q psy8029         438 ---WISSMTSLKELDLRHNNFS  456 (693)
Q Consensus       438 ---~~~~l~~L~~L~L~~N~l~  456 (693)
                         .+...++|++|+|++|.|+
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHhCCCCCEEeccCCCCC
Confidence               1223344444444444444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.32  E-value=3.8e-15  Score=141.58  Aligned_cols=112  Identities=24%  Similarity=0.326  Sum_probs=77.7

Q ss_pred             cCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCC
Q psy8029          96 YFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTS  175 (693)
Q Consensus        96 ~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  175 (693)
                      .|..+++|++|++++| .++.++  .+.++++|++|++++|.++.++. .+..+++|++|++++|.+++++  .+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n-~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTN-NIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS--GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEE-EESCCC--CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCHH--HHHHHHH
T ss_pred             HHhcCCCCCEEECCCC-CCcccc--ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcCC--ccccCCC
Confidence            6777777888888777 777766  46777778888887777776664 3455677777777777777653  3666777


Q ss_pred             CCEEEccCCCCCCCCh-hhcCCCCCCcEEECcCCCCCcC
Q psy8029         176 LRILNLDHNQLINLTR-AIFNNVPNLRSLDISGNNISIL  213 (693)
Q Consensus       176 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~  213 (693)
                      |++|++++|+++.++. ..+..+++|++|++++|.++..
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            7777777777766544 4566666777777766666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.28  E-value=1.3e-14  Score=137.89  Aligned_cols=110  Identities=26%  Similarity=0.327  Sum_probs=49.8

Q ss_pred             hccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCC
Q psy8029         341 FESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVN  420 (693)
Q Consensus       341 ~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~  420 (693)
                      |..+++|++|++++|+++.++....+++|++|++++|.++.++ ..+..+++|++|++++|.++..     + .+..+++
T Consensus        44 ~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~N~l~~l-----~-~~~~l~~  116 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIASL-----S-GIEKLVN  116 (198)
T ss_dssp             HHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCS-SHHHHHHHCSEEEEEEEECCCH-----H-HHHHHHH
T ss_pred             HhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccccc-chhhcCCcCCEEECcCCcCCcC-----C-ccccCCC
Confidence            3444445555555444444443344444444444444444332 1233334444444444444432     1 2334445


Q ss_pred             CcEEECCCCCCCcCCh-hHHhcCCCCcEEECCCCCCcc
Q psy8029         421 LETINLSYNRISSLFD-DWISSMTSLKELDLRHNNFSF  457 (693)
Q Consensus       421 L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~  457 (693)
                      |++|++++|.++++++ ..+..+++|+.|++++|++++
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            5555555555544332 334455555555555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.25  E-value=5.1e-13  Score=139.44  Aligned_cols=167  Identities=18%  Similarity=0.137  Sum_probs=70.8

Q ss_pred             CCCcEEEccCCCCCCCChhhhcc-----CccCceEeccCCcCccc--cCc-cCCCCCCeEeCCCCcccccccccc-----
Q psy8029         321 KKLVKLELQRNKLKYLPENLFES-----LKELYTLNLKNNQLENI--TSL-VGLSGLNSLDLSWNQLEQINLIAF-----  387 (693)
Q Consensus       321 ~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~Ls~n~l~~l--~~~-~~l~~L~~L~Ls~n~l~~~~~~~~-----  387 (693)
                      ++|++|++++|.++......+..     .++|+.|+|++|.++..  ... ..+++|++|+|++|.+++.....+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            34555555555544322222211     13455555555554431  111 233345555555555544333222     


Q ss_pred             CCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCC----hhHHhcCCCCcEEECCCCCCccCCCc--
Q psy8029         388 DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLF----DDWISSMTSLKELDLRHNNFSFIPDQ--  461 (693)
Q Consensus       388 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~--  461 (693)
                      ...+.|++|+|++|.++..+.......+..+++|++|+|++|.+++..    ...+...++|+.|+|++|.|+.....  
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            123445555555555543221111222334445555555555554322    22233444555555555555432211  


Q ss_pred             --ccccCCCccEEECCCCCCceeeccch
Q psy8029         462 --LDSIVSNKLTLDLSFNQIAIVDLRTL  487 (693)
Q Consensus       462 --~~~~l~~L~~L~L~~N~l~~~~~~~~  487 (693)
                        .+...++|+.|||++|.|+......+
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             HHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence              12223445555555555554443333

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=99.16  E-value=3.7e-11  Score=104.48  Aligned_cols=100  Identities=16%  Similarity=0.272  Sum_probs=75.9

Q ss_pred             EEECCCCCCc--cCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcH
Q psy8029         447 ELDLRHNNFS--FIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNY  524 (693)
Q Consensus       447 ~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~  524 (693)
                      .++.+++.++  .+|..   ..++++.|+|++|+|+.++...|..+              .+++.++|++|||.|||++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~---lp~~l~~L~Ls~N~l~~l~~~~f~~l--------------~~L~~L~L~~NP~~CdC~l~   74 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA---FPVDTTELVLTGNNLTALPPGLLDAL--------------PALRTAHLGANPWRCDCRLV   74 (130)
T ss_dssp             EEECCSSCCCTTTSCSC---CCTTCSEEECTTSCCSSCCTTTGGGC--------------TTCCEEECCSSCCBCSGGGH
T ss_pred             EEEeCCCCCccccCCCC---CCcCCCEEECCCCcCCccChhhhhhc--------------cccCEEEecCCCeeccCccH
Confidence            5667777776  66543   33457788888888887777777665              34789999999999999999


Q ss_pred             HHHHHHhcccccceeeeeeeccCceeecCC---CCccccccCCCCCccc
Q psy8029         525 DLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINSVRPENLTCD  570 (693)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~~~~l~c~  570 (693)
                      ||.+|+......       .....++|..|   +|..+.++..+++.|.
T Consensus        75 ~l~~wl~~~~~~-------~~~~~~~C~~P~~l~g~~l~~l~~~~l~c~  116 (130)
T 3rfe_A           75 PLRAWLAGRPER-------APYRDLRCVAPPALRGRLLPYLAEDELRAA  116 (130)
T ss_dssp             HHHHHHHTSSCS-------GGGTTCBCCBSTTTTTCBGGGCCHHHHHHT
T ss_pred             HHHHHHHhCccc-------ccccCcEeCcChHHcCCCcccCCHHHhhCc
Confidence            999999875321       12457899998   8889999998888865

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.15  E-value=1.1e-10  Score=121.27  Aligned_cols=104  Identities=19%  Similarity=0.248  Sum_probs=70.2

Q ss_pred             EEEeeCC-cccccCcccCCCCCCCcEEEcCC-CCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcC
Q psy8029         130 SLNLRGN-SITELYSGVFQYVPKLQVLDLGS-NDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISG  207 (693)
Q Consensus       130 ~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  207 (693)
                      .++++++ +++.+|.  +..+++|++|+|++ |.+..+++..|.++++|++|+|++|+++++++..|.++++|++|+|++
T Consensus        12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3466665 6666665  56666677777764 667666666666777777777777777776666666777777777777


Q ss_pred             CCCCcCCCCcCCCCCCCcEEEcCCCcccc
Q psy8029         208 NNISILPSGVFSDLRKLQTFYANSNRFQM  236 (693)
Q Consensus       208 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~  236 (693)
                      |+++.+++..|..++ |+.|++.+|.+..
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            777776666665555 7777777776663

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.65  E-value=1.8e-08  Score=104.02  Aligned_cols=86  Identities=14%  Similarity=0.074  Sum_probs=46.9

Q ss_pred             CCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhH----HhcCCCCcEEECCCCCCccCCCccccc
Q psy8029         390 LSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW----ISSMTSLKELDLRHNNFSFIPDQLDSI  465 (693)
Q Consensus       390 l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~  465 (693)
                      +++|++|++.+|.+.......... ...+++|++|+|+.|.+++.....    +..+++|+.|++++|.|+......+..
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~-a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLE-SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHH-CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHh-CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            566666666666655321100000 123567777777777776643222    235677888888777766433322222


Q ss_pred             -CCCccEEECCCCC
Q psy8029         466 -VSNKLTLDLSFNQ  478 (693)
Q Consensus       466 -l~~L~~L~L~~N~  478 (693)
                       +  ...+++++++
T Consensus       330 al--g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL--PMKIDVSDSQ  341 (362)
T ss_dssp             HC--CSEEECCSBC
T ss_pred             Hc--CCEEEecCCc
Confidence             1  2457777776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.65  E-value=2.2e-08  Score=103.43  Aligned_cols=160  Identities=13%  Similarity=0.112  Sum_probs=100.6

Q ss_pred             hccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccC--CCCCCcEEECCC--CcCcccc-cccCCCCc
Q psy8029         341 FESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFD--GLSSLNTVDLSH--NLLTFDE-YQYGYSPL  415 (693)
Q Consensus       341 ~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~--n~l~~~~-~~~~~~~~  415 (693)
                      +..+++|+.|.+++|.-..++.. .+++|++|+|..+.+.......+.  .+++|+.|+|+.  +...+.. .......+
T Consensus       168 l~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             HHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             HhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence            45566777777766531123332 366788888877777654433333  578888888753  2211110 00001112


Q ss_pred             --cCCCCCcEEECCCCCCCcCChhHHh---cCCCCcEEECCCCCCccCCCc----ccccCCCccEEECCCCCCceeeccc
Q psy8029         416 --KQCVNLETINLSYNRISSLFDDWIS---SMTSLKELDLRHNNFSFIPDQ----LDSIVSNKLTLDLSFNQIAIVDLRT  486 (693)
Q Consensus       416 --~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~  486 (693)
                        ..+++|++|+|++|.+.+.....+.   .+++|+.|+|+.|.+++....    .+..+++|+.|++++|.|+......
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~  326 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE  326 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH
Confidence              3579999999999999864444444   578999999999999864322    2345788999999999998765555


Q ss_pred             hhhhcccCCCCCccccccccCcEEEcCCCc
Q psy8029         487 LEIKAAAQDPNEDSTMVARSANIVILNDNP  516 (693)
Q Consensus       487 ~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np  516 (693)
                      +....               ...+++++|+
T Consensus       327 l~~al---------------g~~~~~~~~~  341 (362)
T 2ra8_A          327 LQKSL---------------PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHC---------------CSEEECCSBC
T ss_pred             HHHHc---------------CCEEEecCCc
Confidence            54311               1367888776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.48  E-value=3e-08  Score=92.33  Aligned_cols=68  Identities=6%  Similarity=0.068  Sum_probs=28.1

Q ss_pred             CCCCCeEeCCCCcccccccc----ccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEEC--CCCCCCc
Q psy8029         366 LSGLNSLDLSWNQLEQINLI----AFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINL--SYNRISS  433 (693)
Q Consensus       366 l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~L--s~n~l~~  433 (693)
                      .++|++|+|++|.|.+....    .+...+.|++|+|++|.|+..+.......+...++|++|+|  ++|.+.+
T Consensus        64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A           64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence            34445555555554432211    22223445555555554443321112223334444555555  4444443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.47  E-value=1.6e-07  Score=81.37  Aligned_cols=66  Identities=27%  Similarity=0.553  Sum_probs=59.1

Q ss_pred             CCCCCcEeeecCCCceEEEEcCCCCcc--cCCCCCCCCccccCceEEEEEecCCccccCCCCCCcccccCcEEEccCCcc
Q psy8029         573 PCPARCYCNFSPYYSIMSVNCSSASLT--HMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKLITDLDLSYNNI  650 (693)
Q Consensus       573 ~cp~~~~~~~~~~~~l~~l~ls~n~l~--~ip~~~~~l~~~~~~~l~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  650 (693)
                      +||..|.|.      ...++|++++|+  .+|..++.       .++.|+|++|+|+.++++.|..+++|+.|+|++|.+
T Consensus         1 ~CP~~C~C~------~~~v~Cs~~~L~~~~vP~~lp~-------~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A            1 PCPAPCSCA------GTLVDCGRRGLTWASLPTAFPV-------DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CCCTTCEEE------TTEEECCSSCCCTTTSCSCCCT-------TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CcCCCCEEc------CCEEEeCCCCCccccCCCCCCc-------CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            499999997      248999999999  99987664       367899999999999999999999999999999998


Q ss_pred             c
Q psy8029         651 S  651 (693)
Q Consensus       651 ~  651 (693)
                      .
T Consensus        68 ~   68 (130)
T 3rfe_A           68 R   68 (130)
T ss_dssp             B
T ss_pred             e
Confidence            7

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.44  E-value=3.5e-08  Score=91.87  Aligned_cols=116  Identities=16%  Similarity=0.054  Sum_probs=55.1

Q ss_pred             CCCCCCeEeCCCC-cccccc----ccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCC----
Q psy8029         365 GLSGLNSLDLSWN-QLEQIN----LIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLF----  435 (693)
Q Consensus       365 ~l~~L~~L~Ls~n-~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----  435 (693)
                      ..++|++|+|++| .+....    ...+...++|++|+|++|.+...+.......+...++|++|+|++|.|++..    
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            3455555666555 554322    1233445566666666666654332222223344455666666666655432    


Q ss_pred             hhHHhcCCCCcEEEC--CCCCCccCCC----cccccCCCccEEECCCCCCc
Q psy8029         436 DDWISSMTSLKELDL--RHNNFSFIPD----QLDSIVSNKLTLDLSFNQIA  480 (693)
Q Consensus       436 ~~~~~~l~~L~~L~L--~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~  480 (693)
                      ...+...++|++|+|  ++|.|+....    ..+...+.|+.|+|++|.+.
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            222334455555555  5555543211    11223344555555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.18  E-value=6.4e-07  Score=87.58  Aligned_cols=82  Identities=26%  Similarity=0.283  Sum_probs=41.1

Q ss_pred             cCCCCCCeEeCCCCccccccc--cccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCCh-----
Q psy8029         364 VGLSGLNSLDLSWNQLEQINL--IAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD-----  436 (693)
Q Consensus       364 ~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----  436 (693)
                      ..+++|+.|+|++|.|+++..  ..+..+++|+.|+|++|.+++..   ....+..+ +|++|+|++|.+.+..+     
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~---~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y  242 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER---ELDKIKGL-KLEELWLDGNSLCDTFRDQSTY  242 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG---GGGGGTTS-CCSEEECTTSTTGGGCSSHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch---hhhhcccC-CcceEEccCCcCccccCcchhH
Confidence            345566666666666665432  33445566666666666665431   01122222 55666666665554221     


Q ss_pred             --hHHhcCCCCcEEE
Q psy8029         437 --DWISSMTSLKELD  449 (693)
Q Consensus       437 --~~~~~l~~L~~L~  449 (693)
                        ..+..+|+|+.||
T Consensus       243 ~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          243 ISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHCTTCCEES
T ss_pred             HHHHHHHCcccCeEC
Confidence              2244555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.13  E-value=1.3e-06  Score=79.03  Aligned_cols=94  Identities=12%  Similarity=0.053  Sum_probs=60.6

Q ss_pred             cCCCCCCC--CCccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCCCccCCCc----ccccEEEccCCcC
Q psy8029          40 DRLPEQNL--GPFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLSPPYFDGL----HFVKHILLSHNKE  113 (693)
Q Consensus        40 ~~l~~~~~--~~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~~~~~~~l----~~L~~L~Ls~n~~  113 (693)
                      ..+|....  -++++|++++|.+++.++..+   .+++.|+.|+|++| ..|++-.-..+..+    ++|++|+|++|.+
T Consensus        51 ~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L---~~~~~L~~L~L~~C-~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~  126 (176)
T 3e4g_A           51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHM---EGLQYVEKIRLCKC-HYIEDGCLERLSQLENLQKSMLEMEIISCGN  126 (176)
T ss_dssp             GGSCCCSTTCCCEEEEEEESCCCCGGGGGGG---TTCSCCCEEEEESC-TTCCHHHHHHHHTCHHHHHHCCEEEEESCTT
T ss_pred             ccCCcccCCCceEeEEeCcCCCccHHHHHHh---cCCCCCCEEEeCCC-CccCHHHHHHHHhcccccCCCCEEEcCCCCc
Confidence            34665432  357888888888877776655   36777888888877 34553332334442    3677777777756


Q ss_pred             cccccccccCCCCCCcEEEeeCCc
Q psy8029         114 ITGLHKDIFKGTPQLESLNLRGNS  137 (693)
Q Consensus       114 i~~~~~~~~~~l~~L~~L~L~~n~  137 (693)
                      |++..-..+..+++|++|++++|.
T Consensus       127 ITD~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          127 VTDKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             CCHHHHHHGGGCTTCCEEEEESCT
T ss_pred             CCHHHHHHHhcCCCCCEEECCCCC
Confidence            776555556667777777777764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.04  E-value=1.5e-06  Score=78.63  Aligned_cols=83  Identities=14%  Similarity=0.123  Sum_probs=48.9

Q ss_pred             cccEEEccCCcCcccccccccCCCCCCcEEEeeCCc-ccccCcccCCCC----CCCcEEEcCCC-CCCccChhhhCCCCC
Q psy8029         102 FVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNS-ITELYSGVFQYV----PKLQVLDLGSN-DVAYMDPEIFKNLTS  175 (693)
Q Consensus       102 ~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l----~~L~~L~Ls~n-~l~~~~~~~~~~l~~  175 (693)
                      +|++||+++| .|++..-..+.++++|++|+|++|. |++-.-..++.+    ++|++|+|++| ++++..-..+..+++
T Consensus        62 ~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            5666666666 5666555556666667777776663 444222222332    35777777766 366544444566777


Q ss_pred             CCEEEccCCC
Q psy8029         176 LRILNLDHNQ  185 (693)
Q Consensus       176 L~~L~L~~n~  185 (693)
                      |++|+++++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            7777777763

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.80  E-value=1.7e-05  Score=77.47  Aligned_cols=61  Identities=30%  Similarity=0.361  Sum_probs=28.0

Q ss_pred             CCCCcEEEccCCCCCCCCh--hhhccCccCceEeccCCcCccccCccCCC--CCCeEeCCCCccc
Q psy8029         320 CKKLVKLELQRNKLKYLPE--NLFESLKELYTLNLKNNQLENITSLVGLS--GLNSLDLSWNQLE  380 (693)
Q Consensus       320 ~~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~--~L~~L~Ls~n~l~  380 (693)
                      +++|++|+|++|.++.++.  ..+..+++|+.|+|++|+|+++.....+.  +|++|+|++|.+.
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence            4455555555555554332  22334555555555555555443221111  4445555555444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.43  E-value=8.5e-05  Score=68.50  Aligned_cols=87  Identities=10%  Similarity=0.104  Sum_probs=40.0

Q ss_pred             CCCCeEeCCCC-cccccc----ccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhH---
Q psy8029         367 SGLNSLDLSWN-QLEQIN----LIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDW---  438 (693)
Q Consensus       367 ~~L~~L~Ls~n-~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---  438 (693)
                      +.|++|+|++| .|....    ..++..-..|+.|+|++|.|...+.......+...+.|++|+|++|.|.+.....   
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            34555555543 443221    1233334555555555555554432222333444555666666666655433222   


Q ss_pred             -HhcCCCCcEEECCCC
Q psy8029         439 -ISSMTSLKELDLRHN  453 (693)
Q Consensus       439 -~~~l~~L~~L~L~~N  453 (693)
                       +..-+.|++|+|++|
T Consensus       121 aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HTTTTCCCSEEECCCC
T ss_pred             HHhhCCceeEEECCCC
Confidence             223344555655543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.42  E-value=0.00011  Score=67.65  Aligned_cols=91  Identities=11%  Similarity=0.085  Sum_probs=55.0

Q ss_pred             cCCCCCCeEeCCCCcccccccccc----CCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCC---CcC--
Q psy8029         364 VGLSGLNSLDLSWNQLEQINLIAF----DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRI---SSL--  434 (693)
Q Consensus       364 ~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l---~~~--  434 (693)
                      ..-+.|+.|+|++|.|.+....++    ...+.|+.|+|++|.|...+.......+...+.|++|+|++|..   ...  
T Consensus        67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~  146 (197)
T 1pgv_A           67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE  146 (197)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred             hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence            344567777777777765443333    34567888888888877654433344566677788888886533   321  


Q ss_pred             --ChhHHhcCCCCcEEECCCCC
Q psy8029         435 --FDDWISSMTSLKELDLRHNN  454 (693)
Q Consensus       435 --~~~~~~~l~~L~~L~L~~N~  454 (693)
                        ....+..-+.|+.|+++.|.
T Consensus       147 ~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          147 MDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHhCCCcCeEeccCCC
Confidence              12234455666666666554

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=94.08  E-value=0.095  Score=42.22  Aligned_cols=48  Identities=27%  Similarity=0.397  Sum_probs=35.7

Q ss_pred             CccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCc
Q psy8029          88 NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNS  137 (693)
Q Consensus        88 ~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~  137 (693)
                      .++.|...+|.+|.+|+.+.+..  .++.|...+|.+|.+|+.+.+....
T Consensus         7 ~vt~I~~~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~~~   54 (100)
T 2lz0_A            7 PVVGMDKSLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTGED   54 (100)
T ss_dssp             CCCSSCSCTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECCSC
T ss_pred             ccCEecHHHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcCCC
Confidence            66777777777777787777776  3777777777777777777776543

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=91.33  E-value=0.26  Score=39.57  Aligned_cols=47  Identities=28%  Similarity=0.535  Sum_probs=33.0

Q ss_pred             CcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCC
Q psy8029         113 EITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSN  160 (693)
Q Consensus       113 ~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n  160 (693)
                      .++.|...+|.+|.+|+.+.+..+ ++.|...+|.+|.+|+.+.+...
T Consensus         7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            566777777777777777777643 66677777777777777777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	693
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-10
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-08
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	8e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	8e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.004

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.6 bits (213), Expect = 4e-19
 Identities = 63/299 (21%), Positives = 123/299 (41%), Gaps = 25/299 (8%)

Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234
            LR++      L  + + +    P+   LD+  N I+ +  G F +L+ L T    +N+ 
Sbjct: 11  HLRVVQCSDLGLEKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 235 QMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWN 294
                  FA +  L+ + +S ++  LKELP  +   L  L      E+ I ++   +F  
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQ--LKELPEKMPKTLQELRV---HENEITKVRKSVFNG 122

Query: 295 STNITNIVLTGHK-KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 353
              +  + L  +  K + + +  F+  KKL  + +    +  +P+ L  SL EL+   L 
Sbjct: 123 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH---LD 179

Query: 354 NNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYG 411
            N++  +   SL GL+ L  L LS+N +  ++  +      L  + L++N L        
Sbjct: 180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 239

Query: 412 YSPLKQCVNLETINLSYNRISSLFDD------WISSMTSLKELDLRHNNFSFIPDQLDS 464
                    ++ + L  N IS++  +      + +   S   + L  N   +   Q  +
Sbjct: 240 -----DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 293

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.5 bits (210), Expect = 9e-19
 Identities = 59/283 (20%), Positives = 111/283 (39%), Gaps = 18/283 (6%)

Query: 126 PQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQ 185
           P    L+L+ N ITE+  G F+ +  L  L L +N ++ + P  F  L  L  L L  NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 186 LINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEM 245
           L  L   +   +   + L +  N I+ +   VF+ L ++      +N  +    +  A  
Sbjct: 91  LKELPEKMPKTL---QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 246 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG 305
              ++  I     ++  +P GL  +L  L+   L  + I ++ +       N+   +   
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNL-AKLGLS 203

Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITS--- 362
              ++++ +    +   L +L L  NKL  +P  L    K +  + L NN +  I S   
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA-DHKYIQVVYLHNNNISAIGSNDF 262

Query: 363 -----LVGLSGLNSLDLSWNQLEQINLI--AFDGLSSLNTVDL 398
                    +  + + L  N ++   +    F  +     V L
Sbjct: 263 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 27/172 (15%)

Query: 329 QRNKLKYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIA 386
               L+ +P++L         L+L+NN++  I       L  L++L L  N++ +I+  A
Sbjct: 18  SDLGLEKVPKDLPPDTA---LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 74

Query: 387 FDGLSSLNTVDLSHNLLT--FDEYQYGYSPLKQCVN-----------------LETINLS 427
           F  L  L  + LS N L    ++       L+   N                 +  +  +
Sbjct: 75  FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 134

Query: 428 YNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
             + S + +     M  L  + +   N + IP     +  +   L L  N+I
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNITTIP---QGLPPSLTELHLDGNKI 183

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 2e-04
 Identities = 34/237 (14%), Positives = 71/237 (29%), Gaps = 12/237 (5%)

Query: 420 NLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
           +   ++L  N+I+ + D    ++ +L  L L +N  S I     + +     L LS NQ+
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 480 AIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVY 539
             +           + P     +      I  +  +          +    +   +  + 
Sbjct: 92  KELP---------EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 142

Query: 540 QMLELVTDNLECFGNAGVGINSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLT 599
                    L     A   I ++        T+              S+  +N  +  L 
Sbjct: 143 NGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA-KLG 201

Query: 600 HMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKL--ITDLDLSYNNISHVD 654
              + +        A +  L   + + N  ++ P        I  + L  NNIS + 
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 258

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 13/83 (15%)

Query: 572 KPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLE 631
             CP RC C+         V CS   L  +P  LP            L L NN I    +
Sbjct: 2   PVCPFRCQCHLR------VVQCSDLGLEKVPKDLPPDTA-------LLDLQNNKITEIKD 48

Query: 632 SPPESYKLITDLDLSYNNISHVD 654
              ++ K +  L L  N IS + 
Sbjct: 49  GDFKNLKNLHTLILINNKISKIS 71

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.9 bits (193), Expect = 3e-16
 Identities = 70/355 (19%), Positives = 124/355 (34%), Gaps = 40/355 (11%)

Query: 151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
           +     LG  +V   D     +L  +  L  D   + ++       + NL  ++ S N +
Sbjct: 23  EKMKTVLGKTNVT--DTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQL 78

Query: 211 SILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
           + +      +L KL     N+N+                 +  +   D            
Sbjct: 79  TDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 271 LPLLNTVILGESSIAELPSDLFWNS----------TNITNIVLTGHKKLTSLPSTLFRDC 320
           L L +  I   S+++ L S    +            N+T +             ++    
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196

Query: 321 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLE 380
             L  L    N++  +      +   L  L+L  NQL++I +L  L+ L  LDL+ NQ+ 
Sbjct: 197 TNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS 254

Query: 381 QINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLK----------------QCVNLETI 424
             NL    GL+ L  + L  N ++      G + L                    NL  +
Sbjct: 255 --NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 312

Query: 425 NLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
            L +N IS +    +SS+T L+ L   +N  S +     + ++N   L    NQI
Sbjct: 313 TLYFNNISDI--SPVSSLTKLQRLFFANNKVSDVSSL--ANLTNINWLSAGHNQI 363

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.0 bits (183), Expect = 5e-15
 Identities = 62/359 (17%), Positives = 128/359 (35%), Gaps = 48/359 (13%)

Query: 131 LNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLT 190
             L   ++T+  S     + ++  L      +  +D    + L +L  +N  +NQL ++T
Sbjct: 27  TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDIT 82

Query: 191 RAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKY--- 247
                N+  L  + ++ N I+ +            T + N        K+L    +    
Sbjct: 83  --PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 140

Query: 248 -------LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITN 300
                    +  ++  +             L  L T+   + S  ++             
Sbjct: 141 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE 200

Query: 301 IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 360
            ++  + +++ +          L +L L  N+LK +      SL  L  L+L NNQ+ N+
Sbjct: 201 SLIATNNQISDITPLGI--LTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNL 256

Query: 361 TSLVGLSGLNSLDLSWNQLEQI--------------------NLIAFDGLSSLNTVDLSH 400
             L GL+ L  L L  NQ+  I                    ++     L +L  + L  
Sbjct: 257 APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 316

Query: 401 NLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP 459
           N ++        SP+     L+ +  + N++S +    ++++T++  L   HN  S + 
Sbjct: 317 NNIS------DISPVSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLT 367

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.9 bits (149), Expect = 8e-11
 Identities = 43/238 (18%), Positives = 84/238 (35%), Gaps = 41/238 (17%)

Query: 164 YMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRK 223
             D  +   LT+L  L   +NQ+ ++T      + NL  L ++GN +  + +   + L  
Sbjct: 187 VSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT--LASLTN 242

Query: 224 LQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS 283
           L      +N+                                   + L  L  + LG + 
Sbjct: 243 LTDLDLANNQISNLAP----------------------------LSGLTKLTELKLGANQ 274

Query: 284 IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 343
           I+ +          +T +      +      +   + K L  L L  N +  +      S
Sbjct: 275 ISNISP-----LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSS 327

Query: 344 LKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
           L +L  L   NN++ +++SL  L+ +N L    NQ+   +L     L+ +  + L+  
Sbjct: 328 LTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQIS--DLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 8e-07
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 9/122 (7%)

Query: 87  SNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVF 146
               + +     GL  + ++ L+ N+               L  L L  N+I+++     
Sbjct: 271 GANQISNISPLAGLTALTNLELNENQLE---DISPISNLKNLTYLTLYFNNISDISP--V 325

Query: 147 QYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDIS 206
             + KLQ L   +N V+  D     NLT++  L+  HNQ+ +LT     N+  +  L ++
Sbjct: 326 SSLTKLQRLFFANNKVS--DVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 381

Query: 207 GN 208
             
Sbjct: 382 DQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 5e-04
 Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 321 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLE 380
            + +K  L +  +          L ++ TL      +++I  +  L+ L  ++ S NQL 
Sbjct: 22  AEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT 79

Query: 381 QINLIAFDGLSSLNTVDLSHN 401
             ++     L+ L  + +++N
Sbjct: 80  --DITPLKNLTKLVDILMNNN 98

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 1e-11
 Identities = 54/268 (20%), Positives = 101/268 (37%), Gaps = 12/268 (4%)

Query: 214 PSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPL 273
           P           T        Q  P  + A  + + +     H + +  +P+  F     
Sbjct: 3   PGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFL-----HGNRISHVPAASFRACRN 57

Query: 274 LNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKL 333
           L  + L  + +A + +  F     +  + L+ + +L S+    F    +L  L L R  L
Sbjct: 58  LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117

Query: 334 KYLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLS 391
           + L   LF  L  L  L L++N L+ +   +   L  L  L L  N++  +   AF GL 
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

Query: 392 SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLR 451
           SL+ + L  N              +    L T+ L  N +S+L  + ++ + +L+ L L 
Sbjct: 178 SLDRLLLHQN----RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233

Query: 452 HNNFSFIPDQLDSIVSNKLTLDLSFNQI 479
            N +         + +       S +++
Sbjct: 234 DNPWVCDCR-ARPLWAWLQKFRGSSSEV 260

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 5e-09
 Identities = 46/279 (16%), Positives = 94/279 (33%), Gaps = 32/279 (11%)

Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKEL---YTLNLKNNQLENITS 362
            + L ++P  +        ++ L  N++ ++P   F + + L   +  +    +++    
Sbjct: 20  QQGLQAVPVGIPAA---SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 363 LVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLE 422
                          QL  ++   F GL  L+T+ L          + G    +    L+
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR----CGLQELGPGLFRGLAALQ 132

Query: 423 TINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIV 482
            + L  N + +L DD    + +L  L L  N  S +P++    + +   L L  N++A V
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 483 DLRTLEIKAAAQDPNEDSTMV----------ARSANIVILNDNPIACNCSNYDLIRFVSK 532
                            +  +           R+   + LNDNP  C+C    L  ++  
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL-- 250

Query: 533 KMTKTVYQMLELVTDNLECFGNA---GVGINSVRPENLT 568
                  Q     +  + C       G  +  +   +L 
Sbjct: 251 -------QKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 4e-08
 Identities = 43/192 (22%), Positives = 87/192 (45%), Gaps = 9/192 (4%)

Query: 73  NITTINTLAFSNSPS---------NVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFK 123
            I+ +   +F    +          +  +    F GL  ++ + LS N ++  +    F 
Sbjct: 43  RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102

Query: 124 GTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDH 183
           G  +L +L+L    + EL  G+F+ +  LQ L L  N +  +  + F++L +L  L L  
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162

Query: 184 NQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFA 243
           N++ ++    F  + +L  L +  N ++ +    F DL +L T Y  +N     P +  A
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222

Query: 244 EMKYLQVIKISY 255
            ++ LQ ++++ 
Sbjct: 223 PLRALQYLRLND 234

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 32/182 (17%), Positives = 59/182 (32%), Gaps = 2/182 (1%)

Query: 75  TTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLR 134
                +    +   +  +    F     +  + L  N                 +     
Sbjct: 32  AASQRIFLHGN--RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 135 GNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIF 194
              +  +    F  + +L  L L    +  + P +F+ L +L+ L L  N L  L    F
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 195 NNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKIS 254
            ++ NL  L + GN IS +P   F  L  L     + NR        F ++  L  + + 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 255 YH 256
            +
Sbjct: 210 AN 211

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 9e-05
 Identities = 25/162 (15%), Positives = 56/162 (34%), Gaps = 4/162 (2%)

Query: 326 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLI 385
               +  L+ +P  +  + + ++   L  N++ ++ +        +L + W     +  I
Sbjct: 16  TSCPQQGLQAVPVGIPAASQRIF---LHGNRISHVPAAS-FRACRNLTILWLHSNVLARI 71

Query: 386 AFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSL 445
                + L  ++               +       L T++L    +  L       + +L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 446 KELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTL 487
           + L L+ N    +PD     + N   L L  N+I+ V  R  
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 13/90 (14%)

Query: 573 PCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLES 632
           PCP  C C   P     + +C    L  +P  +P       A S ++ LH N I+H    
Sbjct: 1   PCPGACVCYNEPKV---TTSCPQQGLQAVPVGIP-------AASQRIFLHGNRISHV--- 47

Query: 633 PPESYKLITDLDLSYNNISHVDTMYPYLNH 662
           P  S++   +L + + + + +  +      
Sbjct: 48  PAASFRACRNLTILWLHSNVLARIDAAAFT 77

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 1e-10
 Identities = 52/265 (19%), Positives = 84/265 (31%), Gaps = 34/265 (12%)

Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG 365
            + LT+LP  L +D      L L  N L             L  LNL   +L  +     
Sbjct: 19  KRNLTALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT 75

Query: 366 LSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETIN 425
           L  L +LDLS NQL+ + L+     +        + L +            Q      + 
Sbjct: 76  LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE-----LY 130

Query: 426 LSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLR 485
           L  N + +L    ++    L++L L +NN + +P  L + + N  TL L  N +  +   
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190

Query: 486 TLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELV 545
                                     L+ NP  CNC      R++               
Sbjct: 191 FFGSH---------------LLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYV------ 229

Query: 546 TDNLECFGNAGVGINSVRPENLTCD 570
                      V   +    ++ CD
Sbjct: 230 -----WKQGVDVKAMTSNVASVQCD 249

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 3e-10
 Identities = 43/211 (20%), Positives = 64/211 (30%), Gaps = 10/211 (4%)

Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYA 229
              + S   +N D   L  L   +     +   L +S N +            +L     
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 230 NSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS 289
           +                 L V+       +  +    L   LP L  + +  + +  LP 
Sbjct: 63  DRAELTKLQV-----DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 290 DLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYT 349
                   +  +      +L +LP  L     KL KL L  N L  LP  L   L+ L T
Sbjct: 118 GALRGLGELQELY-LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

Query: 350 LNLKNNQLENI-TSLVGLSGLNSLDLSWNQL 379
           L L+ N L  I     G   L    L  N  
Sbjct: 177 LLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 1e-08
 Identities = 39/209 (18%), Positives = 67/209 (32%), Gaps = 10/209 (4%)

Query: 149 VPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
           V     ++    ++  + P++ K+ T   IL+L  N L   + A       L  L++   
Sbjct: 9   VASHLEVNCDKRNLTALPPDLPKDTT---ILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 209 NISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLF 268
            ++            L                         +  +    + L  LP G  
Sbjct: 66  ELTK-----LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 269 ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL 328
             L  L  + L  + +  LP  L   +  +   +   +  LT LP+ L    + L  L L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKL-EKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 329 QRNKLKYLPENLFESLKELYTLNLKNNQL 357
           Q N L  +P+  F     L    L  N  
Sbjct: 180 QENSLYTIPKGFF-GSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 6e-06
 Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 9/196 (4%)

Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEI 169
             + +T L  D+ K       L+L  N +            +L  L+L  +       ++
Sbjct: 18  DKRNLTALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQLNL--DRAELTKLQV 72

Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYA 229
              L  L  L+L HNQ +     +   +P L  LD+S N ++ LP G    L +LQ  Y 
Sbjct: 73  DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131

Query: 230 NSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS 289
             N  +  P  L      L+ + ++ +  +  ELP+GL   L  L+T++L E+S+  +P 
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT--ELPAGLLNGLENLDTLLLQENSLYTIPK 189

Query: 290 DLFWNSTNITNIVLTG 305
             F  S  +    L G
Sbjct: 190 GFF-GSHLLPFAFLHG 204

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 1/99 (1%)

Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEI 169
               +T L     +G  +L+ L L+GN +  L  G+    PKL+ L L +N++  +   +
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167

Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGN 208
              L +L  L L  N L  + +  F +   L    + GN
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 138 ITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNV 197
           +T L  G  + + +LQ L L  N++  + P +      L  L+L +N L  L   + N +
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171

Query: 198 PNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQ 235
            NL +L +  N++  +P G F     L   + + N + 
Sbjct: 172 ENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 580 CNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLILHNNSINHFLESPPESYKL 639
           C  S   S + VNC   +LT +P  LP         +  L L  N +  F  +    Y  
Sbjct: 4   CEVSKVASHLEVNCDKRNLTALPPDLP-------KDTTILHLSENLLYTFSLATLMPYTR 56

Query: 640 ITDLDLSYNNISHVDTMYPYLNHLELIDSEKIICH 674
           +T L+L    +     +   L  L  +D       
Sbjct: 57  LTQLNLDRAEL-TKLQVDGTLPVLGTLDLSHNQLQ 90

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.7 bits (131), Expect = 8e-10
 Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 8/120 (6%)

Query: 349 TLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEY 408
            L+L +  L  +  L  L  +  LDLS N+L  +   A   L  L  +  S N       
Sbjct: 2   VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDN------A 54

Query: 409 QYGYSPLKQCVNLETINLSYNRISSLFD-DWISSMTSLKELDLRHNNFSFIPDQLDSIVS 467
                 +     L+ + L  NR+        + S   L  L+L+ N+        + +  
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 4/103 (3%)

Query: 306 HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVG 365
           HK LT L          +  L+L  N+L+ LP     +L+ L  L   +N LEN+  +  
Sbjct: 7   HKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDGVAN 63

Query: 366 LSGLNSLDLSWNQLEQINLI-AFDGLSSLNTVDLSHNLLTFDE 407
           L  L  L L  N+L+Q   I        L  ++L  N L  +E
Sbjct: 64  LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 7/109 (6%)

Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDP 167
           L+H   +T L     +    +  L+L  N +  L       +  L+VL    N +  +D 
Sbjct: 5   LAHKD-LTVL--CHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDG 60

Query: 168 EIFKNLTSLRILNLDHNQLINL-TRAIFNNVPNLRSLDISGNNISILPS 215
                    + L L +N+L          + P L  L++ GN++     
Sbjct: 61  VANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 8/114 (7%)

Query: 177 RILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQM 236
           R+L+L H  L  L       +  +  LD+S N +  LP    + LR L+   A+ N  + 
Sbjct: 1   RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 57

Query: 237 FPKDLFAEMKYLQVIKISYHKDSLKELPS-GLFANLPLLNTVILGESSIAELPS 289
                       ++ ++    + L++  +     + P L  + L  +S+ +   
Sbjct: 58  VD----GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 1e-08
 Identities = 24/135 (17%), Positives = 55/135 (40%), Gaps = 1/135 (0%)

Query: 317 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSW 376
           + +  +  +L+L+  K+  + ENL  +L +   ++  +N++  +     L  L +L ++ 
Sbjct: 14  YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNN 72

Query: 377 NQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD 436
           N++ +I       L  L  + L++N L         + LK    L  +            
Sbjct: 73  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL 132

Query: 437 DWISSMTSLKELDLR 451
             I  +  ++ LD +
Sbjct: 133 YVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 22/134 (16%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 122 FKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNL 181
           +    +   L+LRG  I  +   +   + +   +D   N++  +D   F  L  L+ L +
Sbjct: 14  YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLV 70

Query: 182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKD- 240
           ++N++  +   +   +P+L  L ++ N++  L         K  T+           K  
Sbjct: 71  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 130

Query: 241 ---LFAEMKYLQVI 251
              +  ++  ++V+
Sbjct: 131 RLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 6e-04
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 7/108 (6%)

Query: 352 LKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYG 411
           L    +E             LDL   ++  I  +    L   + +D S N +   +    
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDNEIRKLDGFPL 61

Query: 412 YSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP 459
                    L+T+ ++ NRI  + +    ++  L EL L +N+   + 
Sbjct: 62  ------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 103

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 7e-04
 Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 5/134 (3%)

Query: 194 FNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKI 253
           + N    R LD+ G  I ++   + + L +      + N  +      F  ++ L+ + +
Sbjct: 14  YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLV 70

Query: 254 SYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP 313
           + ++     +  GL   LP L  +IL  +S+ EL       S      +      +T+  
Sbjct: 71  NNNRI--CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 314 STLFRDCKKLVKLE 327
                   K+ ++ 
Sbjct: 129 HYRLYVIYKVPQVR 142

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.5 bits (127), Expect = 2e-08
 Identities = 41/228 (17%), Positives = 76/228 (33%), Gaps = 20/228 (8%)

Query: 151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
               +  G ++V   D     +L  +  L+     +  +       + NL  L++  N I
Sbjct: 20  NAIKIAAGKSNVT--DTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQI 75

Query: 211 SILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
           + L      +L K+     + N  +        +      +  +   D            
Sbjct: 76  TDLA--PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 330
           L L    I   S +A L +  + +                    T   +  KL  L+   
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLS-----------IGNAQVSDLTPLANLSKLTTLKADD 182

Query: 331 NKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQ 378
           NK+  +      SL  L  ++LKNNQ+ +++ L   S L  + L+ NQ
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.6 bits (122), Expect = 8e-08
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 21/235 (8%)

Query: 168 EIF--KNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQ 225
            IF    L +   +    + + +       ++  + +L   G  ++ +       L  L 
Sbjct: 11  VIFPDPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQYLNNLI 66

Query: 226 TFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA 285
                 N+                 +  +  K+            L L +T I   + + 
Sbjct: 67  GLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI---TDVT 123

Query: 286 ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLK 345
            L          +    +T    L  L +  +                +        +L 
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI----------GNAQVSDLTPLANLS 173

Query: 346 ELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSH 400
           +L TL   +N++ +I+ L  L  L  + L  NQ+   ++      S+L  V L++
Sbjct: 174 KLTTLKADDNKISDISPLASLPNLIEVHLKNNQIS--DVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 375 SWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSL 434
           S    +  +L     LS L T+    N ++        SPL    NL  ++L  N+IS +
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKIS------DISPLASLPNLIEVHLKNNQISDV 210

Query: 435 FDDWISSMTSLKELDLRH 452
               +++ ++L  + L +
Sbjct: 211 SP--LANTSNLFIVTLTN 226

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.1 bits (123), Expect = 9e-08
 Identities = 47/312 (15%), Positives = 92/312 (29%), Gaps = 19/312 (6%)

Query: 174 TSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR 233
                L L++  L +L        P+L SL  S N+++ LP  +   L+ L     N   
Sbjct: 38  RQAHELELNNLGLSSLPELP----PHLESLVASCNSLTELPE-LPQSLKSLLVDNNNLKA 92

Query: 234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFW 293
               P  L         ++      +   L      N  L     L  S       +   
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 294 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 353
                   +           S        L    +             ++L  L T+   
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 354 NNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYS 413
           NN L+ +  L       ++  ++         +   L     +    + L  + Y    S
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 414 PLKQCV------NLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVS 467
             +         +LE +N+S N++  L     +    L+ L    N+ + +P+   ++  
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPELPQNLK- 327

Query: 468 NKLTLDLSFNQI 479
               L + +N +
Sbjct: 328 ---QLHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 6e-07
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 12/92 (13%)

Query: 374 LSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISS 433
              N          D   SL  +++S+N L                 LE +  S+N ++ 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI--------ELPALPPRLERLIASFNHLAE 318

Query: 434 LFDDWISSMTSLKELDLRHNNFSFIPDQLDSI 465
           + +       +LK+L + +N     PD  +S+
Sbjct: 319 VPE----LPQNLKQLHVEYNPLREFPDIPESV 346

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 8e-07
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 132 NLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTR 191
               N+ +     +    P L+ L++ +N +     E+      L  L    N L  +  
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI----ELPALPPRLERLIASFNHLAEVPE 321

Query: 192 AIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQ 225
                  NL+ L +  N +   P  +   +  L+
Sbjct: 322 LP----QNLKQLHVEYNPLREFPD-IPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 4e-06
 Identities = 52/332 (15%), Positives = 103/332 (31%), Gaps = 32/332 (9%)

Query: 127 QLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQL 186
           Q   L L    ++ L        P L+ L    N +  + PE+ ++L SL + N +   L
Sbjct: 39  QAHELELNNLGLSSLPE----LPPHLESLVASCNSLTEL-PELPQSLKSLLVDNNNLKAL 93

Query: 187 INLTRAIFNNVPN------------LRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234
            +L   +     +               L I   + + L                N+   
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 235 QMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWN 294
           ++        +  +     S  K     L          +   +    ++  L +    N
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 295 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 354
           +   T   L    +  ++      D  +L +     +  + +   L E    LY LN  +
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 355 NQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSP 414
           N+    +       L  L++S N+L ++          L  +  S N L           
Sbjct: 274 NE--IRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLA--------EV 319

Query: 415 LKQCVNLETINLSYNRISSLFDDWISSMTSLK 446
            +   NL+ +++ YN +     D   S+  L+
Sbjct: 320 PELPQNLKQLHVEYNPLREF-PDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 50/346 (14%), Positives = 91/346 (26%), Gaps = 31/346 (8%)

Query: 320 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQL 379
            ++  +LEL    L  LPE        L +L    N L  +  L     L SL +  N L
Sbjct: 37  DRQAHELELNNLGLSSLPE----LPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNL 90

Query: 380 EQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWI 439
           + ++             DL   L            L +  N   + +     +SL     
Sbjct: 91  KALS-------------DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD 137

Query: 440 SSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNED 499
              +        +        Q    ++     + S  ++  + L    I A      E 
Sbjct: 138 LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEEL 197

Query: 500 STMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGI 559
             +        I  DN +     +              +  + EL         +  +  
Sbjct: 198 PELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFS 257

Query: 560 NSVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQL 619
                                      S+  +N S+  L  +P   P           +L
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP--------RLERL 309

Query: 620 ILHNNSINHFLESPPESYKLITDLDLSYNNISHVDTMYPYLNHLEL 665
           I   N +       PE  + +  L + YN +     +   +  L +
Sbjct: 310 IASFNHLAEV----PELPQNLKQLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 110 HNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEI 169
           +    +   + +    P LE LN+  N + EL +      P+L+ L    N +A    E+
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLA----EV 319

Query: 170 FKNLTSLRILNLDHNQLINLTRAIFNNVPNLR 201
            +   +L+ L++++N L      I  +V +LR
Sbjct: 320 PELPQNLKQLHVEYNPLREFP-DIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 33/285 (11%), Positives = 74/285 (25%), Gaps = 39/285 (13%)

Query: 415 LKQCV--NLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTL 472
           L+ C+      + L+   +SSL +        L+ L    N+ + +P+   S+ S  +  
Sbjct: 32  LRDCLDRQAHELELNNLGLSSLPE----LPPHLESLVASCNSLTELPELPQSLKSLLVDN 87

Query: 473 DLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSK 532
           +       +  L      +  Q         +    I+ +++N +         + F++ 
Sbjct: 88  NNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 147

Query: 533 KMTKTVYQMLELVTDNLECFGNAGVGIN-------------------------------- 560
              +            L         +                                 
Sbjct: 148 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 207

Query: 561 SVRPENLTCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKATSIQLI 620
           ++  +N    T P         +   + ++            D     +         L 
Sbjct: 208 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY 267

Query: 621 LHNNSINHFLESPPESYKLITDLDLSYNNISHVDTMYPYLNHLEL 665
             N S N           L  +L++S N +  +  + P L  L  
Sbjct: 268 YLNASSNEIRSLCDLPPSL-EELNVSNNKLIELPALPPRLERLIA 311

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 10/86 (11%)

Query: 95  PYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQV 154
              D    ++ + +S+NK       ++    P+LE L    N + E+     +    L+ 
Sbjct: 278 SLCDLPPSLEELNVSNNK-----LIELPALPPRLERLIASFNHLAEV----PELPQNLKQ 328

Query: 155 LDLGSNDVAYMDPEIFKNLTSLRILN 180
           L +  N +    P+I +++  LR+ +
Sbjct: 329 LHVEYNPLREF-PDIPESVEDLRMNS 353

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (120), Expect = 1e-07
 Identities = 36/230 (15%), Positives = 74/230 (32%), Gaps = 6/230 (2%)

Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234
           S R+     +++  +   +     N   L      + ++  G FS    L+    + N  
Sbjct: 9   SNRVFLCQESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 235 QMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWN 294
               +                  ++L  +    F NLP L  +++  + I  LP     +
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 295 STNITNIVLTGHKKLTSLPSTLFRDCKKLV-KLELQRNKLKYLPENLFESLKELYTLNLK 353
           S     + +  +  + ++    F         L L +N ++ +    F   +        
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 354 NNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHN 401
           NN LE +      G SG   LD+S  ++  +     + L  L      + 
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (117), Expect = 3e-07
 Identities = 33/235 (14%), Positives = 77/235 (32%), Gaps = 6/235 (2%)

Query: 130 SLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINL 189
               + + +TE+ S +         L      +  +    F     L  + +  N ++ +
Sbjct: 12  VFLCQESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68

Query: 190 TRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQ 249
             A   +              ++L     +        Y   +   +       ++  LQ
Sbjct: 69  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 128

Query: 250 VIKISYHKDSLKELPSGLFANLPLLNTVILG-ESSIAELPSDLFWNSTNITNIVLTGHKK 308
            + +    +                 +VIL    +  +   +  +N T +  + L+ +  
Sbjct: 129 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN 188

Query: 309 LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL 363
           L  LP+ +F      V L++ R ++  LP    E+LK+L   +     L+ + +L
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTL 241

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 20/85 (23%), Positives = 33/85 (38%)

Query: 101 HFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSN 160
            F   IL  +   I  +H   F GT   E      N++ EL + VF       +LD+   
Sbjct: 152 SFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 211

Query: 161 DVAYMDPEIFKNLTSLRILNLDHNQ 185
            +  +     +NL  LR  +  + +
Sbjct: 212 RIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 6e-04
 Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 415 LKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIP 459
                    +++S  RI SL    + ++  L+       N   +P
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP 239

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (122), Expect = 2e-07
 Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 6/99 (6%)

Query: 369 LNSLDLSWNQLEQINLIA-FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLS 427
           + SLD+   +L           L     V L    LT    +   S L+    L  +NL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 428 YNRIS-----SLFDDWISSMTSLKELDLRHNNFSFIPDQ 461
            N +       +     +    +++L L++   +     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 102

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 6e-07
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 387 FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS-----SLFDDWISS 441
               S L  + L+   ++        + L    +L  ++LS N +       L +     
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 442 MTSLKELDLRHNNFSF-IPDQLDSIVSNKLTLD 473
              L++L L    +S  + D+L ++  +K +L 
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 3e-05
 Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 12/97 (12%)

Query: 152 LQVLDLGSNDVAYMD-PEIFKNLTSLRILNLDHNQL-----INLTRAIFNNVPNLRSLDI 205
           +Q LD+   +++     E+   L   +++ LD   L      +++ A+  N P L  L++
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN-PALAELNL 62

Query: 206 SGNNIS-----ILPSGVFSDLRKLQTFYANSNRFQMF 237
             N +       +  G+ +   K+Q     +      
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 99

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 4e-05
 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 9/86 (10%)

Query: 135 GNSITELYSGVFQYVPKLQVLDLGSNDV----AYMDPEIFKNLTSLRILNLDHNQL---- 186
              + EL  G+ Q    L+VL L   DV                SLR L+L +N L    
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 187 -INLTRAIFNNVPNLRSLDISGNNIS 211
            + L  ++      L  L +     S
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWS 439

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 12/96 (12%)

Query: 392 SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS----SLFDDWISSMTSLKE 447
            + ++D+    L+   +      L      + + L    ++          +    +L E
Sbjct: 3   DIQSLDIQCEELSDARWA---ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 448 LDLRHNNFS-----FIPDQLDSIVSNKLTLDLSFNQ 478
           L+LR N         +   L +       L L    
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 7e-04
 Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 12/119 (10%)

Query: 323 LVKLELQRNKLKYLP-ENLFESLKELYTLNLKNNQLENI------TSLVGLSGLNSLDLS 375
           +  L++Q  +L       L   L++   + L +  L         ++L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 376 WNQLEQINLIAF-----DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYN 429
            N+L  + +             +  + L +  LT        S L+    L+ ++LS N
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 7/67 (10%), Positives = 27/67 (40%), Gaps = 7/67 (10%)

Query: 419 VNLETINLSYNRISSL-FDDWISSMTSLKELDLRHNNFS-----FIPDQLDSIVSNKLTL 472
           ++++++++    +S   + + +  +   + + L     +      I   L    +    L
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA-EL 60

Query: 473 DLSFNQI 479
           +L  N++
Sbjct: 61  NLRSNEL 67

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 9/80 (11%)

Query: 409 QYGYSPLKQCVNLETINLSYNRIS----SLFDDWISSMTSLKELDLRHNNFS-----FIP 459
           +      +    L  + L+   +S    S     + +  SL+ELDL +N         + 
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 460 DQLDSIVSNKLTLDLSFNQI 479
           + +         L L     
Sbjct: 419 ESVRQPGCLLEQLVLYDIYW 438

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 11/112 (9%), Positives = 30/112 (26%), Gaps = 25/112 (22%)

Query: 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDV 162
           ++ + +   +       ++     Q + + L    +TE                      
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDI---------------- 47

Query: 163 AYMDPEIFKNLTSLRILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNN 209
                   +   +L  LNL  N+L       + + +      ++ L +    
Sbjct: 48  ----SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 46/317 (14%), Positives = 92/317 (29%), Gaps = 27/317 (8%)

Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSD----LRKLQTFYAN 230
           SL++  +      ++   +  +  +++ + +SGN I    +   S+     + L+    +
Sbjct: 9   SLKLDAITTEDEKSVFAVLLED-DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 231 SNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD 290
                    ++   ++ L    +   K     L    F        +             
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 291 LFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLF-ESLKELYT 349
           L  N                   +   ++   L  +   RN+L+      + ++ +    
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 350 LNLKNNQLENITSLVGLSGLNSLDLSWNQLE--------------QINLIAFDGLSSLNT 395
           L+        I        L        +L+                  IA     +L  
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 396 VDLSHNLLTFDEYQYGYSPLKQCVN--LETINLSYNRIS-----SLFDDWISSMTSLKEL 448
           + L+  LL+            +  N  L+T+ L YN I      +L       M  L  L
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 449 DLRHNNFSFIPDQLDSI 465
           +L  N FS   D +D I
Sbjct: 308 ELNGNRFSEEDDVVDEI 324

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 36/283 (12%), Positives = 78/283 (27%), Gaps = 23/283 (8%)

Query: 392 SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRIS----SLFDDWISSMTSLKE 447
           S+    L  + +T ++ +  ++ L +  +++ I LS N I         + I+S   L+ 
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 448 LDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSA 507
            +        + D++   +   L   L   ++  V L        AQ+P  D        
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 508 NIVIL-----NDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGNAGVGINSV 562
             + L          A        +    K       + +    + LE            
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 563 RPENL--------TCDTKPCPARCYCNFSPYYSIMSVNCSSASLTHMPDYLPVTYEDKKA 614
               L            +          +    +  ++    + TH+             
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 615 TSIQLILHNNSINHFLESPPESY------KLITDLDLSYNNIS 651
              +L L++  ++    +             +  L L YN I 
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 286

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 163 AYMDPEIFKNLTSLRILNLDHNQL-----INLTRAIFNNVPNLRSLDISGNNISILPSGV 217
           A +D         L+ L L +N++       L   I   +P+L  L+++GN  S     V
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD-V 320

Query: 218 FSDLRKL 224
             ++R++
Sbjct: 321 VDEIREV 327

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 2e-06
 Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 4/138 (2%)

Query: 327 ELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIA 386
           EL+  +++ L   +     +     L    L +   LV  +    L+   +    + +I 
Sbjct: 3   ELKPEQVEQLKLIM-SKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRII- 60

Query: 387 FDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLK 446
            + +  L +++LS+N L   +       +++  NL+ +NLS N + S  +        L+
Sbjct: 61  EENIPELLSLNLSNNRLYRLDDMSSI--VQKAPNLKILNLSGNELKSERELDKIKGLKLE 118

Query: 447 ELDLRHNNFSFIPDQLDS 464
           EL L  N+ S       +
Sbjct: 119 ELWLDGNSLSDTFRDQST 136

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 3/105 (2%)

Query: 122 FKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMD--PEIFKNLTSLRIL 179
                    LN R +    L   + + +P+L  L+L +N +  +D    I +   +L+IL
Sbjct: 38  LVAQNIDVVLNRRSSMAATL-RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL 96

Query: 180 NLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKL 224
           NL  N+L +           L  L + GN++S       + +  +
Sbjct: 97  NLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 9/106 (8%)

Query: 108 LSHNKEITGLHKDIFKGTPQLESLNLRGNSIT--ELYSGVFQYVPKLQVLDLGSNDVAYM 165
           L+    +    + I +  P+L SLNL  N +   +  S + Q  P L++L+L  N++   
Sbjct: 47  LNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 106

Query: 166 DPEIFKNLTSLRILNLDHNQLINLT-------RAIFNNVPNLRSLD 204
                     L  L LD N L +          AI    P L  LD
Sbjct: 107 RELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 8e-04
 Identities = 29/171 (16%), Positives = 53/171 (30%), Gaps = 21/171 (12%)

Query: 351 NLKNNQLENITSLVG-LSGLNSLDLSWNQLEQI-NLIAFDGLSSLNTVDLSHNLLTFDEY 408
            LK  Q+E +  ++      +   L    L    +L+A +    LN        L   E 
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIE- 61

Query: 409 QYGYSPLKQCVNLETINLSYNRIS--SLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIV 466
                  +    L ++NLS NR+         +    +LK L+L  N      +      
Sbjct: 62  -------ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG 114

Query: 467 SNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPI 517
                L L  N ++                   S +  R   ++ L+ + +
Sbjct: 115 LKLEELWLDGNSLS---------DTFRDQSTYISAIRERFPKLLRLDGHEL 156

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 45/267 (16%), Positives = 92/267 (34%), Gaps = 16/267 (5%)

Query: 195 NNVPNLRSLDISGNNIS---ILPSGVFSDLRKLQTFY-ANSNRFQMFPKDLFAEMKYLQV 250
                + +LD+SG N+     +PS   ++L  L   Y    N          A++  L  
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 251 IKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT 310
           + I++   S         + +  L T+    ++++        +  N+  I   G++   
Sbjct: 106 LYITHTNVSGAIPDF--LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 311 SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLN 370
           ++P +     K    + + RN+L       F +L   +    +N    + + L G     
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 371 SLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSP--LKQCVNLETINLSY 428
                       +L       +LN +DL +N +       G  P  L Q   L ++N+S+
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY------GTLPQGLTQLKFLHSLNVSF 277

Query: 429 NRISSLFDDWISSMTSLKELDLRHNNF 455
           N +         ++         +N  
Sbjct: 278 NNLCGEIPQG-GNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 48/260 (18%), Positives = 83/260 (31%), Gaps = 8/260 (3%)

Query: 124 GTPQLESLNLRGNSITELYS--GVFQYVPKLQVLDLGSND-VAYMDPEIFKNLTSLRILN 180
            T ++ +L+L G ++ + Y        +P L  L +G  + +    P     LT L  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 181 LDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKD 240
           + H  +        + +  L +LD S N +S       S L  L     + NR      D
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 241 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITN 300
            +     L              L   +      LN   +  S             ++   
Sbjct: 168 SYGSFSKLFTSMTISR----NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 301 IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE-N 359
             +   K   +         K L  L+L+ N++          LK L++LN+  N L   
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 360 ITSLVGLSGLNSLDLSWNQL 379
           I     L   +    + N+ 
Sbjct: 284 IPQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 0.003
 Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 408 YQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVS 467
             +    +    NL  ++L  NRI       ++ +  L  L++  NN      Q  ++  
Sbjct: 233 LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL-Q 291

Query: 468 NKLTLDLSFNQ 478
                  + N+
Sbjct: 292 RFDVSAYANNK 302

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 22/183 (12%), Positives = 63/183 (34%), Gaps = 9/183 (4%)

Query: 175 SLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF 234
               ++     L  + R I     +   L ++ N +  + S                   
Sbjct: 9   EGTTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65

Query: 235 QMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWN 294
               +    E     + ++   ++ +KE+ + +F  L  L T+ L ++ I+ +    F +
Sbjct: 66  LTGIEPNAFEGAS-HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124

Query: 295 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 354
             ++T++ L  +    +     F +  +  K  L     +         ++++   +L +
Sbjct: 125 LNSLTSLNLASNPFNCNCHLAWFAEWLR--KKSLNGGAARC---GAPSKVRDVQIKDLPH 179

Query: 355 NQL 357
           ++ 
Sbjct: 180 SEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.0 bits (89), Expect = 8e-04
 Identities = 44/192 (22%), Positives = 83/192 (43%), Gaps = 13/192 (6%)

Query: 275 NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 334
            TV      + E+P D+     + T ++L  ++        LF     LVKLEL+RN+L 
Sbjct: 11  TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67

Query: 335 YLPENLFESLKELYTLNLKNNQLENI--TSLVGLSGLNSLDLSWNQLEQINLIAFDGLSS 392
            +  N FE    +  L L  N+++ I     +GL  L +L+L  NQ+  +   +F+ L+S
Sbjct: 68  GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127

Query: 393 LNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRH 452
           L +++L+ N    + +   ++   +  +L          S +          ++  DL H
Sbjct: 128 LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKV--------RDVQIKDLPH 179

Query: 453 NNFSFIPDQLDS 464
           + F    +  + 
Sbjct: 180 SEFKCSSENSEG 191

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 29/113 (25%), Positives = 52/113 (46%)

Query: 103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDV 162
              +LL+ N+        +F   P L  L L+ N +T +    F+    +Q L LG N +
Sbjct: 31  TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90

Query: 163 AYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPS 215
             +  ++F  L  L+ LNL  NQ+  +    F ++ +L SL+++ N  +    
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 29/204 (14%), Positives = 58/204 (28%), Gaps = 19/204 (9%)

Query: 151 KLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNI 210
           +    +L    V   D      L S+  +  +++ + ++       +PN+  L ++GN +
Sbjct: 25  ETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKL 80

Query: 211 SILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFAN 270
           +         L  L+                  +           H              
Sbjct: 81  TD-----IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 135

Query: 271 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 330
           L  L       + I  L      ++ ++ +  ++    L  L          L  L L +
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK--------LQNLYLSK 187

Query: 331 NKLKYLPENLFESLKELYTLNLKN 354
           N +  L       LK L  L L +
Sbjct: 188 NHISDLRA--LAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 26/205 (12%), Positives = 56/205 (27%), Gaps = 17/205 (8%)

Query: 171 KNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYAN 230
                    NL    + +      N + ++  +  + ++I  +       L  +   + N
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLN 76

Query: 231 SNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD 290
            N+         A +K L  + +  +K         L     L             +   
Sbjct: 77  GNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 291 LFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTL 350
              +     N +                            N++  +       L +L  L
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLE---------DNQISDIVP--LAGLTKLQNL 183

Query: 351 NLKNNQLENITSLVGLSGLNSLDLS 375
            L  N + ++ +L GL  L+ L+L 
Sbjct: 184 YLSKNHISDLRALAGLKNLDVLELF 208

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 27/207 (13%), Positives = 63/207 (30%), Gaps = 19/207 (9%)

Query: 168 EIF--KNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQ 225
           +IF    L       L    + +       ++  + +L      I  +       L  L 
Sbjct: 10  QIFTDTALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDG--VEYLNNLT 65

Query: 226 TFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA 285
               ++N+       L    K + ++  +     +  L +        L    + +    
Sbjct: 66  QINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 124

Query: 286 ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLK 345
           +  ++L     +   I         +    L     ++  L+               +L 
Sbjct: 125 KNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP------------LANLT 172

Query: 346 ELYTLNLKNNQLENITSLVGLSGLNSL 372
            L  L++ +N++ +I+ L  L+ L SL
Sbjct: 173 TLERLDISSNKVSDISVLAKLTNLESL 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	693
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.96
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.85
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.85
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.82
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.81
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.8
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.69
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.46
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.4
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.38
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.3
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.27
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.29
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.27
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.88
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.88
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.29
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.08

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=1.2e-29  Score=266.72  Aligned_cols=343  Identities=24%  Similarity=0.355  Sum_probs=163.3

Q ss_pred             CCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCC
Q psy8029          98 DGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLR  177 (693)
Q Consensus        98 ~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  177 (693)
                      ..+.+|++|+++++ +|+++..  ++.+++|++|++++|+|+++++  |+++++|++|++++|.+.++.+  ++++++|+
T Consensus        41 ~~l~~l~~L~l~~~-~I~~l~g--l~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~  113 (384)
T d2omza2          41 TDLDQVTTLQADRL-GIKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLT  113 (384)
T ss_dssp             HHHTTCCEEECCSS-CCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             HHhCCCCEEECCCC-CCCCccc--cccCCCCCEEeCcCCcCCCCcc--ccCCcccccccccccccccccc--cccccccc
Confidence            34556667777766 6666532  5556666777777666666653  5666666666666666665543  56666666


Q ss_pred             EEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCC
Q psy8029         178 ILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHK  257 (693)
Q Consensus       178 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  257 (693)
                      .|+++++.++++..  ......+.......+.+..+......................     .+.............+.
T Consensus       114 ~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  186 (384)
T d2omza2         114 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK-----PLANLTTLERLDISSNK  186 (384)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCG-----GGTTCTTCCEEECCSSC
T ss_pred             cccccccccccccc--ccccccccccccccccccccccccccccccccccccccchhh-----hhccccccccccccccc
Confidence            66666666665543  233445555555555444333221111111111111111111     11222222233333222


Q ss_pred             CcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCC
Q psy8029         258 DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLP  337 (693)
Q Consensus       258 ~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~  337 (693)
                        .  .....+..+++++.+++++|.++.+++  +..+++|+.+++++| .++.++.  +..+++|+.+++++|.++.++
T Consensus       187 --~--~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~  257 (384)
T d2omza2         187 --V--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN-QLKDIGT--LASLTNLTDLDLANNQISNLA  257 (384)
T ss_dssp             --C--CCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCCG
T ss_pred             --c--ccccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCC-CCCCcch--hhcccccchhccccCccCCCC
Confidence              1  111123444555555555555544432  233444555555555 4444432  334455555555555554444


Q ss_pred             hhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccC
Q psy8029         338 ENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQ  417 (693)
Q Consensus       338 ~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  417 (693)
                      +  +..+++|+.|++++++++.++....++.++.++++.|.++++.  .+..+++++.|++++|++++.      .++..
T Consensus       258 ~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~--~~~~~~~l~~L~ls~n~l~~l------~~l~~  327 (384)
T d2omza2         258 P--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDI------SPVSS  327 (384)
T ss_dssp             G--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCC------GGGGG
T ss_pred             c--ccccccCCEeeccCcccCCCCcccccccccccccccccccccc--ccchhcccCeEECCCCCCCCC------ccccc
Confidence            3  3444555555555555554444444445555555555544432  233444455555555544421      12444


Q ss_pred             CCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCC
Q psy8029         418 CVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFN  477 (693)
Q Consensus       418 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  477 (693)
                      +++|++|++++|+++++.  .+.++++|++|++++|+|+++++  +..+++|+.|+|++|
T Consensus       328 l~~L~~L~L~~n~l~~l~--~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         328 LTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCEEECCCCCCCCCh--hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            455555555555554432  24445555555555555554433  344444555555444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=6.8e-29  Score=261.02  Aligned_cols=341  Identities=21%  Similarity=0.348  Sum_probs=275.5

Q ss_pred             cccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCc
Q psy8029          74 ITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQ  153 (693)
Q Consensus        74 ~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  153 (693)
                      +.+|++|+++++  .|++++  .++.+++|++|++++| +|+++++  ++++++|++|++++|+++++++  ++++++|+
T Consensus        43 l~~l~~L~l~~~--~I~~l~--gl~~L~nL~~L~Ls~N-~l~~l~~--l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~  113 (384)
T d2omza2          43 LDQVTTLQADRL--GIKSID--GVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLT  113 (384)
T ss_dssp             HTTCCEEECCSS--CCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             hCCCCEEECCCC--CCCCcc--ccccCCCCCEEeCcCC-cCCCCcc--ccCCcccccccccccccccccc--cccccccc
Confidence            457999999999  999886  6889999999999999 9999986  8999999999999999988865  78999999


Q ss_pred             EEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCc
Q psy8029         154 VLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR  233 (693)
Q Consensus       154 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~  233 (693)
                      .|+++++.++++..  ......+.......+.+.......................+..     +...+.........+.
T Consensus       114 ~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  186 (384)
T d2omza2         114 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP-----LANLTTLERLDISSNK  186 (384)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGG-----GTTCTTCCEEECCSSC
T ss_pred             cccccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhh-----hccccccccccccccc
Confidence            99999999888765  4566788888888888776655433333333333333222222     3344555555655554


Q ss_pred             cccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCC
Q psy8029         234 FQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP  313 (693)
Q Consensus       234 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~  313 (693)
                      ....  ..+..+++++.+++++|.  +..+++  +...++|+.+++++|.++.++  .+..+++|+.+++++| .+..++
T Consensus       187 ~~~~--~~~~~l~~~~~l~l~~n~--i~~~~~--~~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n-~l~~~~  257 (384)
T d2omza2         187 VSDI--SVLAKLTNLESLIATNNQ--ISDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANN-QISNLA  257 (384)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSC--CCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSS-CCCCCG
T ss_pred             cccc--cccccccccceeeccCCc--cCCCCc--ccccCCCCEEECCCCCCCCcc--hhhcccccchhccccC-ccCCCC
Confidence            4432  235678889999999887  445544  456788999999999988875  3678899999999999 788777


Q ss_pred             hhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCC
Q psy8029         314 STLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSL  393 (693)
Q Consensus       314 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  393 (693)
                      +  +..+++|++|+++++.++.+++  +..++.++.+.++.|++++++....++++++|++++|+++++.+  +..+++|
T Consensus       258 ~--~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L  331 (384)
T d2omza2         258 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKL  331 (384)
T ss_dssp             G--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred             c--ccccccCCEeeccCcccCCCCc--cccccccccccccccccccccccchhcccCeEECCCCCCCCCcc--cccCCCC
Confidence            5  6789999999999999988876  67899999999999999998888889999999999999998754  7889999


Q ss_pred             cEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCC
Q psy8029         394 NTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHN  453 (693)
Q Consensus       394 ~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  453 (693)
                      ++|++++|+++..      ..+.++++|++|++++|++++++|  +.++++|+.|+|++|
T Consensus       332 ~~L~L~~n~l~~l------~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         332 QRLFFANNKVSDV------SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CEEECCSSCCCCC------GGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CEEECCCCCCCCC------hhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            9999999999843      358889999999999999999876  789999999999987

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.1e-29  Score=248.68  Aligned_cols=260  Identities=25%  Similarity=0.360  Sum_probs=197.7

Q ss_pred             EEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEecc-CC
Q psy8029         277 VILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK-NN  355 (693)
Q Consensus       277 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls-~n  355 (693)
                      ++.++.+++.+|..+.   +++++|++++| .++.+|...|.++++|++|++++|.+..++...+..+..++.+... .+
T Consensus        16 v~c~~~~L~~iP~~ip---~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          16 TSCPQQGLQAVPVGIP---AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EECCSSCCSSCCTTCC---TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEcCCCCCCccCCCCC---CCCCEEECcCC-cCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            4455555666665432   45667777777 6777776667777777777777777777666666666777766553 45


Q ss_pred             cCccccCc--cCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCc
Q psy8029         356 QLENITSL--VGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISS  433 (693)
Q Consensus       356 ~l~~l~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  433 (693)
                      .++.++..  .++++|++|++++|.+..+....+....+|+.+++++|.++..    ....|..+++|++|++++|++++
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i----~~~~f~~~~~L~~L~l~~N~l~~  167 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL----PDDTFRDLGNLTHLFLHGNRISS  167 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCE
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccccccc----ChhHhccccchhhcccccCcccc
Confidence            56665443  6677777777887777777777777788888888888888765    35567778888888888888888


Q ss_pred             CChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcC
Q psy8029         434 LFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILN  513 (693)
Q Consensus       434 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~  513 (693)
                      +++.+|.++++|+.+++++|+++++.+..|..+++++.||+++|+++++++..+...              .+++.++++
T Consensus       168 l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~--------------~~L~~L~l~  233 (284)
T d1ozna_         168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL--------------RALQYLRLN  233 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC--------------TTCCEEECC
T ss_pred             cchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccc--------------cccCEEEec
Confidence            888888888888888888888888888888888888899999999888877777654              458899999


Q ss_pred             CCcccccCCcHHHHHHHhcccccceeeeeeeccCceeecCC---CCccccccCCCCC
Q psy8029         514 DNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLECFGN---AGVGINSVRPENL  567 (693)
Q Consensus       514 ~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~~~~l  567 (693)
                      +|||.|+|++.|+..|+++.         ....++++|..|   +|..+.+++++++
T Consensus       234 ~N~l~C~C~~~~l~~~l~~~---------~~~~~~~~C~~p~~l~g~~l~~l~~~~l  281 (284)
T d1ozna_         234 DNPWVCDCRARPLWAWLQKF---------RGSSSEVPCSLPQRLAGRDLKRLAANDL  281 (284)
T ss_dssp             SSCEECSGGGHHHHHHHHHC---------CSEECCCBEEESGGGTTCBGGGSCGGGS
T ss_pred             CCCCCCCccchHHHHHHHhC---------cCCCCceEeCCchHHcCCccccCCHHHC
Confidence            99999999999999999874         234467899887   7888888887766

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.2e-28  Score=238.58  Aligned_cols=215  Identities=26%  Similarity=0.302  Sum_probs=174.6

Q ss_pred             CCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeC
Q psy8029         295 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDL  374 (693)
Q Consensus       295 ~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~L  374 (693)
                      ...+.+++.+++ .++.+|..+.   +++++|+|++|.++.++...|..+++|++|+|++|+|+.++....+++|++|++
T Consensus         9 ~~~~~~v~C~~~-~L~~iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~L   84 (266)
T d1p9ag_           9 VASHLEVNCDKR-NLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL   84 (266)
T ss_dssp             STTCCEEECTTS-CCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred             cCCCeEEEccCC-CCCeeCcCcC---cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccccccccccccccc
Confidence            344555566666 6666765432   467888888888888877777888888888888888888777777888888888


Q ss_pred             CCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCC
Q psy8029         375 SWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNN  454 (693)
Q Consensus       375 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  454 (693)
                      ++|+++.... .+..+++|+.|++++|.+...    ....+..+.++++|++++|.++.+++..+..+++|+.+++++|+
T Consensus        85 s~N~l~~~~~-~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          85 SHNQLQSLPL-LGQTLPALTVLDVSFNRLTSL----PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             CSSCCSSCCC-CTTTCTTCCEEECCSSCCCCC----CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             cccccccccc-cccccccccccccccccccee----eccccccccccccccccccccceeccccccccccchhccccccc
Confidence            8888877644 677788899999988888765    35667788899999999999999988888889999999999999


Q ss_pred             CccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhcc
Q psy8029         455 FSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKK  533 (693)
Q Consensus       455 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~  533 (693)
                      |+++++..+..+++|+.|+|++|+|+.++...+. .              ++++.++|++|||.|||++.||.+|+++.
T Consensus       160 l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~-~--------------~~L~~L~L~~Np~~CdC~~~~l~~wl~~~  223 (266)
T d1p9ag_         160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG-S--------------HLLPFAFLHGNPWLCNCEILYFRRWLQDN  223 (266)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-T--------------CCCSEEECCSCCBCCSGGGHHHHHHHHHT
T ss_pred             ccccCccccccccccceeecccCCCcccChhHCC-C--------------CCCCEEEecCCCCCCCcchHHHHHHHHhc
Confidence            9999988888899999999999999987665442 1              45889999999999999999999999864

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=3.7e-26  Score=231.76  Aligned_cols=251  Identities=21%  Similarity=0.340  Sum_probs=159.7

Q ss_pred             CcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcC
Q psy8029         128 LESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISG  207 (693)
Q Consensus       128 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  207 (693)
                      .+.++-++.+++.+|...   .+++++|+|++|+++.+++.+|.++++|++|++++|.+..+.+..|.++++|++|++++
T Consensus        12 ~~~~~C~~~~L~~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCCccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            444555555555555542   14555666666666655555556666666666666666665555566666666666666


Q ss_pred             CCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCccc
Q psy8029         208 NNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL  287 (693)
Q Consensus       208 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~  287 (693)
                      |+++.++...   .+.++.|.+.+|.+..++...+.....+..++...+...........|..+++|+.+++++|.+..+
T Consensus        89 n~l~~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l  165 (305)
T d1xkua_          89 NQLKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  165 (305)
T ss_dssp             SCCSBCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             CccCcCccch---hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc
Confidence            6666655432   3456667777777777776666666677777766665434344444566777777788877777776


Q ss_pred             CcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc-cCC
Q psy8029         288 PSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL-VGL  366 (693)
Q Consensus       288 ~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~-~~l  366 (693)
                      +...   .++++.|++++| .....+...|.+++.+++|++++|.++.++...|..+++|++|+|++|+++.+|.. ..+
T Consensus       166 ~~~~---~~~L~~L~l~~n-~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l  241 (305)
T d1xkua_         166 PQGL---PPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH  241 (305)
T ss_dssp             CSSC---CTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTC
T ss_pred             Cccc---CCccCEEECCCC-cCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccc
Confidence            6443   456777777777 55555555667777777777777777777766677777777777777777766544 556


Q ss_pred             CCCCeEeCCCCccccccccccC
Q psy8029         367 SGLNSLDLSWNQLEQINLIAFD  388 (693)
Q Consensus       367 ~~L~~L~Ls~n~l~~~~~~~~~  388 (693)
                      ++|++|+|++|+|+.+...+|.
T Consensus       242 ~~L~~L~Ls~N~i~~i~~~~f~  263 (305)
T d1xkua_         242 KYIQVVYLHNNNISAIGSNDFC  263 (305)
T ss_dssp             SSCCEEECCSSCCCCCCTTSSS
T ss_pred             cCCCEEECCCCccCccChhhcc
Confidence            6666666666666666554443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=9.8e-26  Score=228.63  Aligned_cols=274  Identities=20%  Similarity=0.312  Sum_probs=153.7

Q ss_pred             ccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEE
Q psy8029          77 INTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLD  156 (693)
Q Consensus        77 L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  156 (693)
                      .+.++-++.  .++.+|. .+.  +++++|+|++| +|+.+++.+|.++++|++|++++|.+..+++.+|.++++|++|+
T Consensus        12 ~~~~~C~~~--~L~~lP~-~l~--~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          12 LRVVQCSDL--GLEKVPK-DLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY   85 (305)
T ss_dssp             TTEEECTTS--CCCSCCC-SCC--TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCEEEecCC--CCCccCC-CCC--CCCCEEECcCC-cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEec
Confidence            344555444  5666653 222  45666666666 66666665666666666666666666666555566666666666


Q ss_pred             cCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCC--cCCCCcCCCCCCCcEEEcCCCcc
Q psy8029         157 LGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNIS--ILPSGVFSDLRKLQTFYANSNRF  234 (693)
Q Consensus       157 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~l~~n~l  234 (693)
                      +++|+++.++..   ....++.|++.+|.+..+....+.....+..++...|...  ......+..+++|+.+++++|.+
T Consensus        86 l~~n~l~~l~~~---~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l  162 (305)
T d1xkua_          86 LSKNQLKELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  162 (305)
T ss_dssp             CCSSCCSBCCSS---CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             ccCCccCcCccc---hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc
Confidence            666666655532   2345566666666666666555555555555555555332  12223344444455555544444


Q ss_pred             ccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCCh
Q psy8029         235 QMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS  314 (693)
Q Consensus       235 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~  314 (693)
                      ..+                          +...   +++++.|++++|.........|.+++.+++|++++| .+..++.
T Consensus       163 ~~l--------------------------~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~  212 (305)
T d1xkua_         163 TTI--------------------------PQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDN  212 (305)
T ss_dssp             CSC--------------------------CSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECT
T ss_pred             ccc--------------------------Cccc---CCccCEEECCCCcCCCCChhHhhccccccccccccc-ccccccc
Confidence            443                          3321   345555555555555555555555556666666665 5555555


Q ss_pred             hhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCc--------cCCCCCCeEeCCCCccc--cccc
Q psy8029         315 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSL--------VGLSGLNSLDLSWNQLE--QINL  384 (693)
Q Consensus       315 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--------~~l~~L~~L~Ls~n~l~--~~~~  384 (693)
                      ..|.++++|++|++++|+++.+|. .|..+++|++|+|++|+|+.++..        ....+|+.|+|++|.+.  .+.+
T Consensus       213 ~~~~~l~~L~~L~L~~N~L~~lp~-~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         213 GSLANTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP  291 (305)
T ss_dssp             TTGGGSTTCCEEECCSSCCSSCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred             ccccccccceeeeccccccccccc-ccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCH
Confidence            555666666666666666666654 345566666666666666655432        23456666666666654  3455


Q ss_pred             cccCCC
Q psy8029         385 IAFDGL  390 (693)
Q Consensus       385 ~~~~~l  390 (693)
                      .+|.-+
T Consensus       292 ~~f~~~  297 (305)
T d1xkua_         292 STFRCV  297 (305)
T ss_dssp             GGGTTC
T ss_pred             hHhccc
Confidence            555443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.1e-24  Score=216.19  Aligned_cols=223  Identities=23%  Similarity=0.377  Sum_probs=153.3

Q ss_pred             EEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEcc-C
Q psy8029         105 HILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLD-H  183 (693)
Q Consensus       105 ~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~  183 (693)
                      .++.+++ +++.+|....   +.+++|+|++|+|+++++.+|.++++|++|++++|.+..+.+..+..+..++.+... .
T Consensus        15 ~v~c~~~-~L~~iP~~ip---~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQ-GLQAVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSS-CCSSCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCC-CCCccCCCCC---CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            4566666 7777776432   457788888888888877778888888888888888887777777777777777654 4


Q ss_pred             CCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCccccc
Q psy8029         184 NQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKEL  263 (693)
Q Consensus       184 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i  263 (693)
                      +.++.+.+..|.++++|++|++++|.+..+....+...++|+.+++++|.++.+++.+|+.+++|+.|++++|.  +..+
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~--l~~l  168 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR--ISSV  168 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCEE
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCc--cccc
Confidence            56667777777777777888777777777777667777777777777777777776666666666666666666  4455


Q ss_pred             CccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCC
Q psy8029         264 PSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK  334 (693)
Q Consensus       264 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~  334 (693)
                      ++.+|.++++|+.+++++|++..+.+..|.++++|+.|++++| .+..++...|..+++|++|++++|.+.
T Consensus       169 ~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             chhhhccccccchhhhhhccccccChhHhhhhhhccccccccc-ccccccccccccccccCEEEecCCCCC
Confidence            5556666666666666666666655555555556666666555 555555555555555555555555543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.89  E-value=2e-23  Score=212.22  Aligned_cols=229  Identities=18%  Similarity=0.218  Sum_probs=141.1

Q ss_pred             ccCCCcccccEEEccC-CcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCC
Q psy8029          95 PYFDGLHFVKHILLSH-NKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNL  173 (693)
Q Consensus        95 ~~~~~l~~L~~L~Ls~-n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  173 (693)
                      ..++++++|++|+|++ | ++.+..+..|+++++|++|+|++|++.++++..+..+..|+++++++|.+....|..+.++
T Consensus        70 ~~l~~L~~L~~L~Ls~~N-~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l  148 (313)
T d1ogqa_          70 SSLANLPYLNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL  148 (313)
T ss_dssp             GGGGGCTTCSEEEEEEET-TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred             hHHhcCcccccccccccc-ccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccC
Confidence            5677777888888876 4 6664333347777788888888887777766667777777777777777666666667777


Q ss_pred             CCCCEEEccCCCCCCCChhhcCCCCCC-cEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEE
Q psy8029         174 TSLRILNLDHNQLINLTRAIFNNVPNL-RSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIK  252 (693)
Q Consensus       174 ~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  252 (693)
                      +.|+++++++|.+.+..+..+..+..+ +.++++.|++++..+..+..+.. ..+++..+......+..+          
T Consensus       149 ~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~----------  217 (313)
T d1ogqa_         149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLF----------  217 (313)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGC----------
T ss_pred             cccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccc----------
Confidence            777777777777765555545555544 56666666666555544444332 245555544443333333          


Q ss_pred             EecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCC-cCChhhhcCCCCCcEEEccCC
Q psy8029         253 ISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT-SLPSTLFRDCKKLVKLELQRN  331 (693)
Q Consensus       253 l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~-~l~~~~~~~~~~L~~L~l~~n  331 (693)
                                      ..++.++.++++++.+...++ .+..+++++.|++++| +++ .+|.. |.++++|++|++++|
T Consensus       218 ----------------~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N-~l~g~iP~~-l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         218 ----------------GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNN-RIYGTLPQG-LTQLKFLHSLNVSFN  278 (313)
T ss_dssp             ----------------CTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSS-CCEECCCGG-GGGCTTCCEEECCSS
T ss_pred             ----------------ccccccccccccccccccccc-ccccccccccccCccC-eecccCChH-HhCCCCCCEEECcCC
Confidence                            344444444444444443332 2344556666666666 443 55554 456777777777777


Q ss_pred             CCC-CCChhhhccCccCceEeccCCc
Q psy8029         332 KLK-YLPENLFESLKELYTLNLKNNQ  356 (693)
Q Consensus       332 ~l~-~~~~~~~~~~~~L~~L~Ls~n~  356 (693)
                      +++ .+|.  +..+++|+.+++++|+
T Consensus       279 ~l~g~iP~--~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         279 NLCGEIPQ--GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             EEEEECCC--STTGGGSCGGGTCSSS
T ss_pred             cccccCCC--cccCCCCCHHHhCCCc
Confidence            776 4554  4567777777777776

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=8e-22  Score=194.93  Aligned_cols=198  Identities=22%  Similarity=0.346  Sum_probs=122.6

Q ss_pred             ccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcE
Q psy8029          75 TTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQV  154 (693)
Q Consensus        75 ~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  154 (693)
                      ..+.+++.+++  +++.+|+ .+.  +++++|+|++| .|+.+++.+|.++++|++|+|++|+|+.++.  ++.+++|++
T Consensus        10 ~~~~~v~C~~~--~L~~iP~-~lp--~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~L~~   81 (266)
T d1p9ag_          10 ASHLEVNCDKR--NLTALPP-DLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT   81 (266)
T ss_dssp             TTCCEEECTTS--CCSSCCS-CCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred             CCCeEEEccCC--CCCeeCc-CcC--cCCCEEECcCC-cCCCcCHHHhhcccccccccccccccccccc--ccccccccc
Confidence            34445566665  6666653 222  35667777777 6776666666667777777777777666654  455666777


Q ss_pred             EEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcc
Q psy8029         155 LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF  234 (693)
Q Consensus       155 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  234 (693)
                      |++++|+++..++ .+..+++|++|++++|.+..+....+..+.++++|++++|.++.+++..+..+++++.+++++|++
T Consensus        82 L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_          82 LDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             EECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             ccccccccccccc-ccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence            7777766665543 356666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             ccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCC
Q psy8029         235 QMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI  284 (693)
Q Consensus       235 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l  284 (693)
                      +.+++..|..+++|++|++++|+  ++.+|+++| .+++|+.|++++|.+
T Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~N~--L~~lp~~~~-~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         161 TELPAGLLNGLENLDTLLLQENS--LYTIPKGFF-GSHLLPFAFLHGNPW  207 (266)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTT-TTCCCSEEECCSCCB
T ss_pred             cccCccccccccccceeecccCC--CcccChhHC-CCCCCCEEEecCCCC
Confidence            66666556566666666666665  445555432 345555555555543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.87  E-value=1.6e-22  Score=205.40  Aligned_cols=245  Identities=24%  Similarity=0.271  Sum_probs=138.2

Q ss_pred             cccEEEccCCcCcccc--cccccCCCCCCcEEEeeC-Ccccc-cCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCC
Q psy8029         102 FVKHILLSHNKEITGL--HKDIFKGTPQLESLNLRG-NSITE-LYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLR  177 (693)
Q Consensus       102 ~L~~L~Ls~n~~i~~~--~~~~~~~l~~L~~L~L~~-n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  177 (693)
                      ++++|+|+++ ++++.  .+..+.++++|++|+|++ |.+++ +|.. |+++++|++|+|++|++.++.+..+..+.+|+
T Consensus        51 ~v~~L~L~~~-~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEECCCC-CCCCCCCCChHHhcCccccccccccccccccccccc-cccccccchhhhccccccccccccccchhhhc
Confidence            5666777766 66542  123456666666666664 55553 4433 56666666666666666666655566666666


Q ss_pred             EEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCC-cEEEcCCCccccCChhhhhcccCceEEEEecC
Q psy8029         178 ILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKL-QTFYANSNRFQMFPKDLFAEMKYLQVIKISYH  256 (693)
Q Consensus       178 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  256 (693)
                      ++++++|++....+..+..+++|+++++++|.+++..+..+..+..+ +.+++++|+++...+..               
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~---------------  193 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT---------------  193 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG---------------
T ss_pred             ccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccc---------------
Confidence            66666666555555555566666666666665554333333334333 44445544444322222               


Q ss_pred             CCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCC-C
Q psy8029         257 KDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK-Y  335 (693)
Q Consensus       257 ~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~-~  335 (693)
                                 +..+. ...+++..+...+..+..+...++++.+++++| .+...++. +..+++|+.|++++|+++ .
T Consensus       194 -----------~~~l~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~l~~~~~~-~~~~~~L~~L~Ls~N~l~g~  259 (313)
T d1ogqa_         194 -----------FANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGK-VGLSKNLNGLDLRNNRIYGT  259 (313)
T ss_dssp             -----------GGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS-EECCBGGG-CCCCTTCCEEECCSSCCEEC
T ss_pred             -----------ccccc-ccccccccccccccccccccccccccccccccc-cccccccc-cccccccccccCccCeeccc
Confidence                       22222 234555555555544555566667777777776 44433333 455667777777777766 4


Q ss_pred             CChhhhccCccCceEeccCCcCcc-ccCccCCCCCCeEeCCCCc
Q psy8029         336 LPENLFESLKELYTLNLKNNQLEN-ITSLVGLSGLNSLDLSWNQ  378 (693)
Q Consensus       336 ~~~~~~~~~~~L~~L~Ls~n~l~~-l~~~~~l~~L~~L~Ls~n~  378 (693)
                      +|.. |..+++|++|+|++|++++ +|....+++|+.+++++|+
T Consensus       260 iP~~-l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         260 LPQG-LTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCGG-GGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             CChH-HhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCc
Confidence            5543 4666666666666666663 5555555666666666664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.86  E-value=3.9e-19  Score=183.23  Aligned_cols=302  Identities=25%  Similarity=0.327  Sum_probs=162.8

Q ss_pred             cccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEc
Q psy8029         102 FVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNL  181 (693)
Q Consensus       102 ~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  181 (693)
                      ++++|||+++ +++.+|.    ..++|++|++++|+|+.+|..    ..+|++|++++|+++.+..  +  .+.|++|++
T Consensus        39 ~l~~LdLs~~-~L~~lp~----~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNL-GLSSLPE----LPPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNLKALSD--L--PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTS-CCSCCCS----CCTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCCS--C--CTTCCEEEC
T ss_pred             CCCEEEeCCC-CCCCCCC----CCCCCCEEECCCCCCcccccc----hhhhhhhhhhhcccchhhh--h--ccccccccc
Confidence            5677777777 7777663    145677777777777766542    3567777777776665532  1  134666666


Q ss_pred             cCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCccc
Q psy8029         182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLK  261 (693)
Q Consensus       182 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  261 (693)
                      ++|.+..++.  ++.+++|++|+++++.+...+..    ...+..+.+..+......                       
T Consensus       106 ~~n~l~~lp~--~~~l~~L~~L~l~~~~~~~~~~~----~~~l~~l~~~~~~~~~~~-----------------------  156 (353)
T d1jl5a_         106 SNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP-----------------------  156 (353)
T ss_dssp             CSSCCSSCCC--CTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-----------------------
T ss_pred             cccccccccc--hhhhccceeeccccccccccccc----cccccchhhccccccccc-----------------------
Confidence            6666666543  35566666666666665544331    234444544443332221                       


Q ss_pred             ccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhh
Q psy8029         262 ELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLF  341 (693)
Q Consensus       262 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  341 (693)
                           .+..++.++.+.+..+....++..    ....+.+....+ .+..++.  +..++.|+.+++++|....++.   
T Consensus       157 -----~l~~l~~l~~L~l~~n~~~~~~~~----~~~~~~l~~~~~-~~~~~~~--~~~l~~L~~l~l~~n~~~~~~~---  221 (353)
T d1jl5a_         157 -----ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKTLPD---  221 (353)
T ss_dssp             -----CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCCS---
T ss_pred             -----cccccccceecccccccccccccc----cccccccccccc-ccccccc--cccccccccccccccccccccc---
Confidence                 133344444455544444433321    112233333333 3444433  2345666666666665554442   


Q ss_pred             ccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCC
Q psy8029         342 ESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNL  421 (693)
Q Consensus       342 ~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L  421 (693)
                       ...++..+.+..+.+...+.  ....+...++..+.+.++...    .......++..+.+...        ...+++|
T Consensus       222 -~~~~l~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~l~~l----~~~~~~~~~~~~~~~~~--------~~~~~~L  286 (353)
T d1jl5a_         222 -LPPSLEALNVRDNYLTDLPE--LPQSLTFLDVSENIFSGLSEL----PPNLYYLNASSNEIRSL--------CDLPPSL  286 (353)
T ss_dssp             -CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSEESCC----CTTCCEEECCSSCCSEE--------CCCCTTC
T ss_pred             -cccccccccccccccccccc--ccccccccccccccccccccc----cchhcccccccCccccc--------cccCCCC
Confidence             23445556666665554332  233455555555554443211    12344555555555432        1224567


Q ss_pred             cEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEECCCCCCceee
Q psy8029         422 ETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVD  483 (693)
Q Consensus       422 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  483 (693)
                      ++|+|++|+++.++.    .+++|+.|+|++|+|+.++.    .+++|+.|++++|+|+.++
T Consensus       287 ~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~L~~l~~----~~~~L~~L~L~~N~L~~lp  340 (353)
T d1jl5a_         287 EELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFP  340 (353)
T ss_dssp             CEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCC
T ss_pred             CEEECCCCccCcccc----ccCCCCEEECCCCcCCcccc----ccCCCCEEECcCCcCCCCC
Confidence            777777777776542    35677777777777776653    2456777777777777653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.85  E-value=1.3e-18  Score=179.26  Aligned_cols=314  Identities=25%  Similarity=0.342  Sum_probs=198.4

Q ss_pred             ccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcE
Q psy8029          75 TTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQV  154 (693)
Q Consensus        75 ~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  154 (693)
                      .++++|+++++  .++.++.    ..++|++|++++| +|+.+|..    ..+|+.|++++|+++.++.-    .+.|++
T Consensus        38 ~~l~~LdLs~~--~L~~lp~----~~~~L~~L~Ls~N-~l~~lp~~----~~~L~~L~l~~n~l~~l~~l----p~~L~~  102 (353)
T d1jl5a_          38 RQAHELELNNL--GLSSLPE----LPPHLESLVASCN-SLTELPEL----PQSLKSLLVDNNNLKALSDL----PPLLEY  102 (353)
T ss_dssp             HTCSEEECTTS--CCSCCCS----CCTTCSEEECCSS-CCSSCCCC----CTTCCEEECCSSCCSCCCSC----CTTCCE
T ss_pred             cCCCEEEeCCC--CCCCCCC----CCCCCCEEECCCC-CCcccccc----hhhhhhhhhhhcccchhhhh----cccccc
Confidence            46889999999  9999883    2578999999999 99998753    46899999999999887641    257999


Q ss_pred             EEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcc
Q psy8029         155 LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF  234 (693)
Q Consensus       155 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  234 (693)
                      |++++|.+..++.  ++.+++|++|+++++.+.....    ....+..+.+..+......  .+..++.++.+++.+|.+
T Consensus       103 L~L~~n~l~~lp~--~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~~~~--~l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         103 LGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             EECCSSCCSSCCC--CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccc--hhhhccceeecccccccccccc----ccccccchhhccccccccc--cccccccceecccccccc
Confidence            9999999998875  5789999999999999876653    3467888888877665543  367788999999999887


Q ss_pred             ccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEecCCCCCCcCCh
Q psy8029         235 QMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS  314 (693)
Q Consensus       235 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~  314 (693)
                      ..++..    ....+.+....+.  ...++.  +..++.++.+++++|....++.    ...++..+             
T Consensus       175 ~~~~~~----~~~~~~l~~~~~~--~~~~~~--~~~l~~L~~l~l~~n~~~~~~~----~~~~l~~~-------------  229 (353)
T d1jl5a_         175 KKLPDL----PLSLESIVAGNNI--LEELPE--LQNLPFLTTIYADNNLLKTLPD----LPPSLEAL-------------  229 (353)
T ss_dssp             SSCCCC----CTTCCEEECCSSC--CSSCCC--CTTCTTCCEEECCSSCCSSCCS----CCTTCCEE-------------
T ss_pred             cccccc----ccccccccccccc--cccccc--cccccccccccccccccccccc----cccccccc-------------
Confidence            765432    1233444444433  223332  3455566666666555444331    12334444             


Q ss_pred             hhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCc
Q psy8029         315 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLN  394 (693)
Q Consensus       315 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  394 (693)
                                  .+.++.+...+.    ....+...++..+.+..+...  .......++..+.+.++.    ..+++|+
T Consensus       230 ------------~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~l~~l--~~~~~~~~~~~~~~~~~~----~~~~~L~  287 (353)
T d1jl5a_         230 ------------NVRDNYLTDLPE----LPQSLTFLDVSENIFSGLSEL--PPNLYYLNASSNEIRSLC----DLPPSLE  287 (353)
T ss_dssp             ------------ECCSSCCSCCCC----CCTTCCEEECCSSCCSEESCC--CTTCCEEECCSSCCSEEC----CCCTTCC
T ss_pred             ------------cccccccccccc----ccccccccccccccccccccc--cchhcccccccCcccccc----ccCCCCC
Confidence                        444444433221    122334444444433332221  122334455555554432    2245667


Q ss_pred             EEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCccEEEC
Q psy8029         395 TVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKLTLDL  474 (693)
Q Consensus       395 ~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  474 (693)
                      +|++++|+++..     +   ..+++|+.|+|++|+|+.++.    .+++|+.|++++|+|+.+|..    ...|+.|.+
T Consensus       288 ~L~Ls~N~l~~l-----p---~~~~~L~~L~L~~N~L~~l~~----~~~~L~~L~L~~N~L~~lp~~----~~~L~~L~~  351 (353)
T d1jl5a_         288 ELNVSNNKLIEL-----P---ALPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDI----PESVEDLRM  351 (353)
T ss_dssp             EEECCSSCCSCC-----C---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCC----CTTCCEEEC
T ss_pred             EEECCCCccCcc-----c---cccCCCCEEECCCCcCCcccc----ccCCCCEEECcCCcCCCCCcc----ccccCeeEC
Confidence            777777766633     1   124677777777777776542    245777788888877776542    234555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.85  E-value=5.5e-21  Score=178.70  Aligned_cols=174  Identities=21%  Similarity=0.234  Sum_probs=136.3

Q ss_pred             CeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEE
Q psy8029         370 NSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELD  449 (693)
Q Consensus       370 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  449 (693)
                      +.++.++++++.++....   +++++|+|++|.|+...   ....|..+++|++|+|++|.+..+++..|..+++|++|+
T Consensus        11 ~~v~Cs~~~L~~iP~~lp---~~l~~L~Ls~N~i~~~~---~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRIS---SDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBC---CSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CEEEEeCCCcCccCCCCC---CCCCEEEeCCCCCcccc---cccccCCCceEeeeeccccccccccccccccccccceee
Confidence            345555555555543221   45677777777775421   255677788888888888888888888888888899999


Q ss_pred             CCCCCCccCCCcccccCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHH
Q psy8029         450 LRHNNFSFIPDQLDSIVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRF  529 (693)
Q Consensus       450 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~  529 (693)
                      |++|+|+++++.+|..+++|+.|+|++|+|+.+++.+|..+              .+++++++++|||.|+|++.|+..|
T Consensus        85 Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l--------------~~L~~l~L~~N~~~~~~~~~~~~~~  150 (192)
T d1w8aa_          85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL--------------NSLTSLNLASNPFNCNCHLAWFAEW  150 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTC--------------TTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred             eccccccccCHHHHhCCCcccccccCCccccccCHHHhcCC--------------cccccccccccccccccchHHHhhh
Confidence            99999998888888888999999999999999888887765              4588999999999999999999999


Q ss_pred             HhcccccceeeeeeeccCceeecCC---CCccccccCCCCCcccCC
Q psy8029         530 VSKKMTKTVYQMLELVTDNLECFGN---AGVGINSVRPENLTCDTK  572 (693)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~l~~~~l~c~~~  572 (693)
                      +...         ....+.++|..|   ++..+.+++.+++.|..+
T Consensus       151 l~~~---------~l~~~~~~c~~p~~l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         151 LRKK---------SLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             HHHH---------CCSGGGCBBCSSTTTTTSBGGGSCTTTCCCCCC
T ss_pred             hhhh---------cccCCCeEeCCChhhcCCEeeecCHhhCcCCCC
Confidence            8764         244567889888   788899999999988643

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.9e-20  Score=177.56  Aligned_cols=215  Identities=20%  Similarity=0.293  Sum_probs=128.5

Q ss_pred             cEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccc-cCcccCCCCCCCcEEE
Q psy8029          78 NTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITE-LYSGVFQYVPKLQVLD  156 (693)
Q Consensus        78 ~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~  156 (693)
                      +.++.++.  +++.+|...+   +++++|++++| .|+.++..+|.++++|++|++++|.+.. ++..+|.+++.++++.
T Consensus        11 ~~i~c~~~--~l~~iP~~l~---~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~   84 (242)
T d1xwdc1          11 RVFLCQES--KVTEIPSDLP---RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   84 (242)
T ss_dssp             SEEEEESC--SCSSCCSCSC---SCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEE
T ss_pred             CEEEEeCC--CCCCcCCCCC---CCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeecccccccccccccc
Confidence            45666666  6777764332   46777777777 7777777777777777777777777654 5666677777777777


Q ss_pred             cCC-CCCCccChhhhCCCCCCCEEEccCCCCCCCChh-hcCCCCCCcEEECcCCCCCcCCCCcCCCCC-CCcEEEcCCCc
Q psy8029         157 LGS-NDVAYMDPEIFKNLTSLRILNLDHNQLINLTRA-IFNNVPNLRSLDISGNNISILPSGVFSDLR-KLQTFYANSNR  233 (693)
Q Consensus       157 Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~  233 (693)
                      +.. +.+....+..|.++++|+++++++|+++..... .+..++.+..+...++.+..++...|.+++ .++.|++++|.
T Consensus        85 ~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~  164 (242)
T d1xwdc1          85 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG  164 (242)
T ss_dssp             EECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred             ccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccc
Confidence            654 466677777777777777777777777655432 233445555555566666666665555543 56666666666


Q ss_pred             cccCChhhhhcccCceEE-EEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEE
Q psy8029         234 FQMFPKDLFAEMKYLQVI-KISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI  301 (693)
Q Consensus       234 l~~~~~~~~~~~~~L~~L-~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  301 (693)
                      ++.++...|.. .+++++ .+++|.  ++.++.+.|.++++|++|++++|+++.++...|.++++|+.+
T Consensus       165 l~~i~~~~~~~-~~l~~~~~l~~n~--l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         165 IQEIHNCAFNG-TQLDELNLSDNNN--LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR  230 (242)
T ss_dssp             CCEECTTTTTT-CCEEEEECTTCTT--CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESS
T ss_pred             ccccccccccc-hhhhccccccccc--cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccC
Confidence            66555554432 233322 233333  334555545555555555555555555554444444433333

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.1e-20  Score=177.85  Aligned_cols=219  Identities=21%  Similarity=0.352  Sum_probs=137.6

Q ss_pred             cEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCc-cChhhhCCCCCCCEEEcc
Q psy8029         104 KHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAY-MDPEIFKNLTSLRILNLD  182 (693)
Q Consensus       104 ~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~  182 (693)
                      +.++.++. +++.+|...+   +++++|++++|+|+.++..+|.++++|++|++++|.+.. +++.+|..+++++++.+.
T Consensus        11 ~~i~c~~~-~l~~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQES-KVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESC-SCSSCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCC-CCCCcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            56667766 6777776543   356777777777777777677777777777777776553 455566667777777665


Q ss_pred             C-CCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCccc
Q psy8029         183 H-NQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLK  261 (693)
Q Consensus       183 ~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  261 (693)
                      . |++....+..|.++++|+++++++|.++..+...  .+                     ..+..+..+...++.  +.
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~--~~---------------------~~l~~l~~~~~~n~~--l~  141 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH--KI---------------------HSLQKVLLDIQDNIN--IH  141 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCT--TT---------------------CBSSCEEEEEESCTT--CC
T ss_pred             ccccccccccccccccccccccccchhhhccccccc--cc---------------------ccccccccccccccc--cc
Confidence            3 4566666666666666666666666665443311  11                     122233333333333  33


Q ss_pred             ccCccccCCCC-CccEEEcCCCCCcccCcccccCCCCccEEE-ecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChh
Q psy8029         262 ELPSGLFANLP-LLNTVILGESSIAELPSDLFWNSTNITNIV-LTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN  339 (693)
Q Consensus       262 ~i~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~-l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~  339 (693)
                      .++...|.+++ .++.+++++|.++.++..+|.. .+++.+. +.+| .++.+|..+|.++++|++|++++|+++.+|..
T Consensus       142 ~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~-~~l~~~~~l~~n-~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~  219 (242)
T d1xwdc1         142 TIERNSFVGLSFESVILWLNKNGIQEIHNCAFNG-TQLDELNLSDNN-NLEELPNDVFHGASGPVILDISRTRIHSLPSY  219 (242)
T ss_dssp             EECTTSSTTSBSSCEEEECCSSCCCEECTTTTTT-CCEEEEECTTCT-TCCCCCTTTTTTSCCCSEEECTTSCCCCCCSS
T ss_pred             cccccccccccccceeeecccccccccccccccc-hhhhcccccccc-ccccccHHHhcCCCCCCEEECCCCcCCccCHH
Confidence            44444444443 5666777777777776666543 4444444 4444 78888887788888888888888888888877


Q ss_pred             hhccCccCceEecc
Q psy8029         340 LFESLKELYTLNLK  353 (693)
Q Consensus       340 ~~~~~~~L~~L~Ls  353 (693)
                      .|.++++|+.+++.
T Consensus       220 ~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         220 GLENLKKLRARSTY  233 (242)
T ss_dssp             SCTTCCEEESSSEE
T ss_pred             HHcCCcccccCcCC
Confidence            77777777776654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.7e-21  Score=205.27  Aligned_cols=353  Identities=16%  Similarity=0.151  Sum_probs=152.4

Q ss_pred             cccEEEccCCcCccccc-ccccCCCCCCcEEEeeCCcccccC----cccCCCCCCCcEEEcCCCCCCccChh----hhC-
Q psy8029         102 FVKHILLSHNKEITGLH-KDIFKGTPQLESLNLRGNSITELY----SGVFQYVPKLQVLDLGSNDVAYMDPE----IFK-  171 (693)
Q Consensus       102 ~L~~L~Ls~n~~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~-  171 (693)
                      +|++||++++ ++++.. ...+..++++++|+|++|.++...    ..++..+++|++|+|++|.++.....    .+. 
T Consensus         3 ~l~~ld~~~~-~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCC-cCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            4555555555 555432 222344455555555555554211    12234455555555555555421111    111 


Q ss_pred             CCCCCCEEEccCCCCCCCC----hhhcCCCCCCcEEECcCCCCCcCCCCc-----CCCCCCCcEEEcCCCccccCC----
Q psy8029         172 NLTSLRILNLDHNQLINLT----RAIFNNVPNLRSLDISGNNISILPSGV-----FSDLRKLQTFYANSNRFQMFP----  238 (693)
Q Consensus       172 ~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~----  238 (693)
                      ...+|++|++++|++++..    ...+..+++|++|++++|.++......     ................+....    
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            2235666666666555332    123445555666666655554211100     011112223333332222111    


Q ss_pred             hhhhhcccCceEEEEecCCCcccc---cCccccCCCCCccEEEcCCCCCcccCc----ccccCCCCccEEEecCCCCCCc
Q psy8029         239 KDLFAEMKYLQVIKISYHKDSLKE---LPSGLFANLPLLNTVILGESSIAELPS----DLFWNSTNITNIVLTGHKKLTS  311 (693)
Q Consensus       239 ~~~~~~~~~L~~L~l~~n~~~~~~---i~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~~l~~  311 (693)
                      ...+.....++.++++.+......   +.............+.+..+.+.....    ..+...+.++.+.+.+| .+..
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n-~~~~  240 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGD  240 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhc-cccc
Confidence            111233455566666554421110   000111122344455555554432111    12233455666666665 3221


Q ss_pred             -----CChhhhcCCCCCcEEEccCCCCCCCCh----hhhccCccCceEeccCCcCccc--cC---c--cCCCCCCeEeCC
Q psy8029         312 -----LPSTLFRDCKKLVKLELQRNKLKYLPE----NLFESLKELYTLNLKNNQLENI--TS---L--VGLSGLNSLDLS  375 (693)
Q Consensus       312 -----l~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~Ls~n~l~~l--~~---~--~~l~~L~~L~Ls  375 (693)
                           .....+.....++.+++++|.+.....    ..+...+.++.+++++|.++..  ..   .  .....|+.++++
T Consensus       241 ~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~  320 (460)
T d1z7xw1         241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  320 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             cccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccc
Confidence                 112223345566666666666543221    1123455666666666665431  10   0  233456666666


Q ss_pred             CCcccccccccc----CCCCCCcEEECCCCcCcccccccCCCCc-cCCCCCcEEECCCCCCCcCC----hhHHhcCCCCc
Q psy8029         376 WNQLEQINLIAF----DGLSSLNTVDLSHNLLTFDEYQYGYSPL-KQCVNLETINLSYNRISSLF----DDWISSMTSLK  446 (693)
Q Consensus       376 ~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~  446 (693)
                      +|.++......+    ...++|++|+|++|.++..+.......+ ...+.|++|+|++|.|++..    ...+..+++|+
T Consensus       321 ~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~  400 (460)
T d1z7xw1         321 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR  400 (460)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             ccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCC
Confidence            666554432222    2344566666666655532211011111 23345666666666555421    22334455566


Q ss_pred             EEECCCCCCc
Q psy8029         447 ELDLRHNNFS  456 (693)
Q Consensus       447 ~L~L~~N~l~  456 (693)
                      +|+|++|+|+
T Consensus       401 ~L~Ls~N~i~  410 (460)
T d1z7xw1         401 ELDLSNNCLG  410 (460)
T ss_dssp             EEECCSSSCC
T ss_pred             EEECCCCcCC
Confidence            6666665554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=2.3e-19  Score=172.60  Aligned_cols=186  Identities=23%  Similarity=0.420  Sum_probs=83.5

Q ss_pred             CCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEE
Q psy8029         125 TPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLD  204 (693)
Q Consensus       125 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  204 (693)
                      +.+|++|++.+|.|+.+..  +..+++|++|++++|.++++.+  +..+++|+++++++|.++.+.  .+.++++|+.++
T Consensus        40 l~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~--~l~~l~~L~~l~  113 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLD  113 (227)
T ss_dssp             HHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEE
T ss_pred             cCCcCEEECCCCCCCcchh--HhcCCCCcEeecCCceeecccc--ccccccccccccccccccccc--cccccccccccc
Confidence            4444444444444444421  3444455555555444444432  444455555555555444432  144445555555


Q ss_pred             CcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCC
Q psy8029         205 ISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSI  284 (693)
Q Consensus       205 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l  284 (693)
                      ++++....+..  +...+.++.+.++.+.+.....  +..+++|++|++++|.  +...++  ++++++|++|++++|++
T Consensus       114 l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~--~~~~~~--l~~l~~L~~L~Ls~n~l  185 (227)
T d1h6ua2         114 LTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQ--VSDLTP--LANLSKLTTLKADDNKI  185 (227)
T ss_dssp             CTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSC--CCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             cccccccccch--hccccchhhhhchhhhhchhhh--hccccccccccccccc--cccchh--hcccccceecccCCCcc
Confidence            55544443322  3334455555555544443222  3344455555555444  212211  34455555555555554


Q ss_pred             cccCcccccCCCCccEEEecCCCCCCcCChhhhcCCCCCcEEEcc
Q psy8029         285 AELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQ  329 (693)
Q Consensus       285 ~~~~~~~~~~~~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~  329 (693)
                      ++++.  +.++++|++|++++| .++++++  ++++++|++|+++
T Consensus       186 ~~l~~--l~~l~~L~~L~Ls~N-~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         186 SDISP--LASLPNLIEVHLKNN-QISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             CCCGG--GGGCTTCCEEECTTS-CCCBCGG--GTTCTTCCEEEEE
T ss_pred             CCChh--hcCCCCCCEEECcCC-cCCCCcc--cccCCCCCEEEee
Confidence            44432  334444444444444 4444432  3444444444443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=7.9e-19  Score=168.79  Aligned_cols=203  Identities=23%  Similarity=0.329  Sum_probs=135.9

Q ss_pred             EEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcC
Q psy8029          79 TLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLG  158 (693)
Q Consensus        79 ~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls  158 (693)
                      .+++...  .++++.  .++.+.+|++|++++| +|+++..  ++.+++|++|++++|.++++.+  |..+++|++++++
T Consensus        23 ~~~l~~~--~~~d~~--~~~~l~~L~~L~l~~~-~i~~l~~--l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~   93 (227)
T d1h6ua2          23 KIAAGKS--NVTDTV--TQADLDGITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELS   93 (227)
T ss_dssp             HHHTTCS--STTSEE--CHHHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECC
T ss_pred             HHHhCCC--CcCCcC--CHHHcCCcCEEECCCC-CCCcchh--HhcCCCCcEeecCCceeecccc--ccccccccccccc
Confidence            3344444  444433  4456677777777777 7777642  6677777777777777766544  5677777777777


Q ss_pred             CCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCC
Q psy8029         159 SNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFP  238 (693)
Q Consensus       159 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~  238 (693)
                      +|.++.+.  .+..+++|++++++++...++.+  +...+.++.+.++.+.+....+  +.++++|+.|++++|.+....
T Consensus        94 ~n~~~~i~--~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~  167 (227)
T d1h6ua2          94 GNPLKNVS--AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT  167 (227)
T ss_dssp             SCCCSCCG--GGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred             cccccccc--cccccccccccccccccccccch--hccccchhhhhchhhhhchhhh--hccccccccccccccccccch
Confidence            77766653  26677777777777776665543  5566777777777776665433  556677777777777766554


Q ss_pred             hhhhhcccCceEEEEecCCCcccccCccccCCCCCccEEEcCCCCCcccCcccccCCCCccEEEec
Q psy8029         239 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT  304 (693)
Q Consensus       239 ~~~~~~~~~L~~L~l~~n~~~~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  304 (693)
                      .  +.++++|++|++++|+  ++.+++  +.++++|++|++++|+++++++  +.++++|+.|+++
T Consensus       168 ~--l~~l~~L~~L~Ls~n~--l~~l~~--l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         168 P--LANLSKLTTLKADDNK--ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             G--GTTCTTCCEEECCSSC--CCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             h--hcccccceecccCCCc--cCCChh--hcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence            3  5677777777777776  445543  6677778888888887777763  5677788888775

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.6e-20  Score=199.41  Aligned_cols=380  Identities=17%  Similarity=0.165  Sum_probs=180.9

Q ss_pred             CccEEEEEcCCCCCccHHHHhhhcCcccccEEEeecCCCCccCCC----CccCCCcccccEEEccCCcCcccccccc---
Q psy8029          49 PFNAVTFTFCPLPDENFISLFSKLNITTINTLAFSNSPSNVGVLS----PPYFDGLHFVKHILLSHNKEITGLHKDI---  121 (693)
Q Consensus        49 ~l~~L~l~~c~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~l~----~~~~~~l~~L~~L~Ls~n~~i~~~~~~~---  121 (693)
                      ++++|++++..+.+.++..++..  ++++++|+|++|  .++...    ..++..+++|++|+|++| .|++.....   
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~--l~~l~~L~L~~~--~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~   77 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPL--LQQCQVVRLDDC--GLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQ   77 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHH--HTTCSEEEEESS--CCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHH
T ss_pred             CCCEEEeeCCcCChHHHHHHHHh--CCCCCEEEeCCC--CCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHH
Confidence            46777777777777666666543  466677777777  665221    123456667777777776 665422111   


Q ss_pred             -c-CCCCCCcEEEeeCCcccccC----cccCCCCCCCcEEEcCCCCCCccChhhh-----CCCCCCCEEEccCCCCCCCC
Q psy8029         122 -F-KGTPQLESLNLRGNSITELY----SGVFQYVPKLQVLDLGSNDVAYMDPEIF-----KNLTSLRILNLDHNQLINLT  190 (693)
Q Consensus       122 -~-~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~  190 (693)
                       + ....+|++|++++|.+++..    ..++..+++|++|++++|.+.......+     ...............+....
T Consensus        78 ~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  157 (460)
T d1z7xw1          78 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS  157 (460)
T ss_dssp             TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             HHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhh
Confidence             1 12345666666666665421    2234556666666666665543221111     12222333333333322111


Q ss_pred             h----hhcCCCCCCcEEECcCCCCCcCCCC----c-CCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCCCccc
Q psy8029         191 R----AIFNNVPNLRSLDISGNNISILPSG----V-FSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHKDSLK  261 (693)
Q Consensus       191 ~----~~~~~l~~L~~L~L~~n~i~~~~~~----~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  261 (693)
                      .    ..+.....++.++++.+.+......    . .........+.+..+.+.......+                   
T Consensus       158 ~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~-------------------  218 (460)
T d1z7xw1         158 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL-------------------  218 (460)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH-------------------
T ss_pred             hcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcc-------------------
Confidence            1    1122334455555555443311000    0 0011223344444443331110000                   


Q ss_pred             ccCccccCCCCCccEEEcCCCCCcc-----cCcccccCCCCccEEEecCCCCCCcCCh----hhhcCCCCCcEEEccCCC
Q psy8029         262 ELPSGLFANLPLLNTVILGESSIAE-----LPSDLFWNSTNITNIVLTGHKKLTSLPS----TLFRDCKKLVKLELQRNK  332 (693)
Q Consensus       262 ~i~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~~l~~l~~----~~~~~~~~L~~L~l~~n~  332 (693)
                         ...+...+.++.+.+.++.+..     .....+.....++.+++++| .+...+.    ..+...+.++.+++++|.
T Consensus       219 ---~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n-~i~~~~~~~~~~~l~~~~~l~~l~l~~n~  294 (460)
T d1z7xw1         219 ---CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE  294 (460)
T ss_dssp             ---HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred             ---cccccccccccccchhhccccccccchhhcccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence               0011223444444444444321     11122233445555555555 3332211    112334556666666665


Q ss_pred             CCCCC-----hhhhccCccCceEeccCCcCccccC-----c-cCCCCCCeEeCCCCccccccccc----c-CCCCCCcEE
Q psy8029         333 LKYLP-----ENLFESLKELYTLNLKNNQLENITS-----L-VGLSGLNSLDLSWNQLEQINLIA----F-DGLSSLNTV  396 (693)
Q Consensus       333 l~~~~-----~~~~~~~~~L~~L~Ls~n~l~~l~~-----~-~~l~~L~~L~Ls~n~l~~~~~~~----~-~~l~~L~~L  396 (693)
                      ++...     .........|+.+++++|.++....     . ...++|++|+|++|.+++.....    + ...+.|++|
T Consensus       295 i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L  374 (460)
T d1z7xw1         295 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL  374 (460)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             ccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEE
Confidence            54211     1112233456667776666654211     1 34556777777777776432222    2 235668888


Q ss_pred             ECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHh-----cCCCCcEEECCCCCCc
Q psy8029         397 DLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWIS-----SMTSLKELDLRHNNFS  456 (693)
Q Consensus       397 ~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~N~l~  456 (693)
                      +|++|.++..+.......+..+++|++|+|++|.+++.....+.     ....|+.|++.+|.+.
T Consensus       375 ~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         375 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             ECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            88888877543222233455677888888888887754333332     2234555665555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=8.4e-18  Score=159.11  Aligned_cols=163  Identities=25%  Similarity=0.385  Sum_probs=84.3

Q ss_pred             ccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcE
Q psy8029          75 TTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQV  154 (693)
Q Consensus        75 ~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  154 (693)
                      ..++.|+++++  .++.+.  .++.+++|++|++++| .|+++++  ++.+++|++|++++|++++++.  +.++++|+.
T Consensus        46 ~~L~~L~l~~~--~i~~l~--~l~~l~~L~~L~L~~n-~i~~l~~--~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~  116 (210)
T d1h6ta2          46 NSIDQIIANNS--DIKSVQ--GIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKS  116 (210)
T ss_dssp             HTCCEEECTTS--CCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCE
T ss_pred             cCccEEECcCC--CCCCch--hHhhCCCCCEEeCCCc-cccCccc--cccCcccccccccccccccccc--ccccccccc
Confidence            34555555555  555444  2455555555555555 5555543  3455555555555555555442  455555555


Q ss_pred             EEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCcc
Q psy8029         155 LDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRF  234 (693)
Q Consensus       155 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  234 (693)
                      |++++|.+..+.  .+..+++++.+++++|.+++...  +..+++|+++++++|+++++++  +.++++|+.|++++|.+
T Consensus       117 L~l~~~~~~~~~--~l~~l~~l~~l~~~~n~l~~~~~--~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         117 LSLEHNGISDIN--GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             EECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             cccccccccccc--ccccccccccccccccccccccc--cccccccccccccccccccccc--ccCCCCCCEEECCCCCC
Confidence            555555544432  24455555555555555544332  3445555555555555554432  44555555555555555


Q ss_pred             ccCChhhhhcccCceEEEEe
Q psy8029         235 QMFPKDLFAEMKYLQVIKIS  254 (693)
Q Consensus       235 ~~~~~~~~~~~~~L~~L~l~  254 (693)
                      +.++.  +.++++|++|+++
T Consensus       191 ~~l~~--l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         191 SDLRA--LAGLKNLDVLELF  208 (210)
T ss_dssp             CBCGG--GTTCTTCSEEEEE
T ss_pred             CCChh--hcCCCCCCEEEcc
Confidence            55432  4455555555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=3e-18  Score=160.79  Aligned_cols=146  Identities=27%  Similarity=0.388  Sum_probs=77.2

Q ss_pred             CcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCE
Q psy8029          99 GLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRI  178 (693)
Q Consensus        99 ~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  178 (693)
                      .++++++|++++| +|+.+..  ++.+++|++|++++|+++++++  ++++++|++|++++|.+..+++  +.++++|++
T Consensus        38 ~l~~l~~L~l~~~-~i~~l~~--l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~  110 (199)
T d2omxa2          38 DLDQVTTLQADRL-GIKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG  110 (199)
T ss_dssp             HHTTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred             HhcCCCEEECCCC-CCCCccc--cccCCCcCcCccccccccCccc--ccCCcccccccccccccccccc--ccccccccc
Confidence            4455556666665 5555432  4455556666666655555443  4555556666665555554432  455555555


Q ss_pred             EEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccCChhhhhcccCceEEEEecCC
Q psy8029         179 LNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMFPKDLFAEMKYLQVIKISYHK  257 (693)
Q Consensus       179 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  257 (693)
                      |+++++.+..+..  +..+++|+.|++++|++..++.  +..+++|+.|++.+|.++.+++  +.++++|++|++++|+
T Consensus       111 L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         111 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNK  183 (199)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             ccccccccccccc--cchhhhhHHhhhhhhhhccccc--ccccccccccccccccccCCcc--ccCCCCCCEEECCCCC
Confidence            5555555544332  4455555555555555554432  4455555555555555554432  4444555555555544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.7e-17  Score=155.53  Aligned_cols=161  Identities=22%  Similarity=0.391  Sum_probs=141.3

Q ss_pred             cccccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCc
Q psy8029          74 ITTINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQ  153 (693)
Q Consensus        74 ~~~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  153 (693)
                      +..++.|+++++  .+++++  .++.+++|++|++++| .++++++  ++++++|++|++++|.+..++.  +.+++.|+
T Consensus        39 l~~l~~L~l~~~--~i~~l~--~l~~l~nL~~L~Ls~N-~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~  109 (199)
T d2omxa2          39 LDQVTTLQADRL--GIKSID--GVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLT  109 (199)
T ss_dssp             HTTCCEEECTTS--CCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCS
T ss_pred             hcCCCEEECCCC--CCCCcc--ccccCCCcCcCccccc-cccCccc--ccCCcccccccccccccccccc--cccccccc
Confidence            567899999998  898876  5888999999999999 9999876  8899999999999999988764  78999999


Q ss_pred             EEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCc
Q psy8029         154 VLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNR  233 (693)
Q Consensus       154 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~  233 (693)
                      .|+++++.+..+.+  +..+++|+.|++++|++..++  .+..+++|++|++.+|+++++++  ++++++|++|++++|+
T Consensus       110 ~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         110 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNK  183 (199)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             cccccccccccccc--cchhhhhHHhhhhhhhhcccc--cccccccccccccccccccCCcc--ccCCCCCCEEECCCCC
Confidence            99999998877643  788999999999999998764  37899999999999999998865  8899999999999999


Q ss_pred             cccCChhhhhcccCceEE
Q psy8029         234 FQMFPKDLFAEMKYLQVI  251 (693)
Q Consensus       234 l~~~~~~~~~~~~~L~~L  251 (693)
                      ++.++.  +..+++|++|
T Consensus       184 i~~i~~--l~~L~~L~~L  199 (199)
T d2omxa2         184 VSDISV--LAKLTNLESL  199 (199)
T ss_dssp             CCCCGG--GGGCTTCSEE
T ss_pred             CCCCcc--ccCCCCCCcC
Confidence            998763  6788888875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=3.2e-17  Score=155.02  Aligned_cols=163  Identities=28%  Similarity=0.365  Sum_probs=95.6

Q ss_pred             CCccEEEecCCCCCCcCChhhhcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCC
Q psy8029         296 TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLS  375 (693)
Q Consensus       296 ~~L~~L~l~~n~~l~~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls  375 (693)
                      .+++.|++++| .++.++.  +..+++|++|++++|+++.+++  +..+++|+.|++++|++++++....+++|+.|+++
T Consensus        46 ~~L~~L~l~~~-~i~~l~~--l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          46 NSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE  120 (210)
T ss_dssp             HTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECT
T ss_pred             cCccEEECcCC-CCCCchh--HhhCCCCCEEeCCCccccCccc--cccCccccccccccccccccccccccccccccccc
Confidence            34555555555 5555443  3456666666666666665553  35566666666666666666555556666666666


Q ss_pred             CCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCC
Q psy8029         376 WNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNF  455 (693)
Q Consensus       376 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  455 (693)
                      +|.+..+.  .+..++.++.+++++|.++.      ...+..+++|+++++++|+++++.+  +.++++|++|++++|+|
T Consensus       121 ~~~~~~~~--~l~~l~~l~~l~~~~n~l~~------~~~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         121 HNGISDIN--GLVHLPQLESLYLGNNKITD------ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             TSCCCCCG--GGGGCTTCCEEECCSSCCCC------CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             cccccccc--cccccccccccccccccccc------ccccccccccccccccccccccccc--ccCCCCCCEEECCCCCC
Confidence            66655443  35555666666666666652      2334555666666666666665543  55666666666666666


Q ss_pred             ccCCCcccccCCCccEEECC
Q psy8029         456 SFIPDQLDSIVSNKLTLDLS  475 (693)
Q Consensus       456 ~~~~~~~~~~l~~L~~L~L~  475 (693)
                      ++++  .+..+++|+.|+|+
T Consensus       191 ~~l~--~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         191 SDLR--ALAGLKNLDVLELF  208 (210)
T ss_dssp             CBCG--GGTTCTTCSEEEEE
T ss_pred             CCCh--hhcCCCCCCEEEcc
Confidence            6553  24556666666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=2e-17  Score=154.18  Aligned_cols=131  Identities=23%  Similarity=0.394  Sum_probs=105.5

Q ss_pred             ccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccc-cCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEc
Q psy8029         103 VKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITE-LYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNL  181 (693)
Q Consensus       103 L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  181 (693)
                      .+.++.+++ +++.||.+.+   +++++|+|++|+|+. ++...|.++++|++|++++|.+..+++..|..+++|++|+|
T Consensus        10 ~~~v~Cs~~-~L~~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGR-GLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTS-CCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEEeCC-CcCccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            356777777 7888776542   567888888888865 66677788888888888888888888888888888888888


Q ss_pred             cCCCCCCCChhhcCCCCCCcEEECcCCCCCcCCCCcCCCCCCCcEEEcCCCccccC
Q psy8029         182 DHNQLINLTRAIFNNVPNLRSLDISGNNISILPSGVFSDLRKLQTFYANSNRFQMF  237 (693)
Q Consensus       182 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  237 (693)
                      ++|+++.+++.+|.++++|++|+|++|+|+.+++++|..+++|++|++++|.+...
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc
Confidence            88888888888888888888888888888888888888888888888888887743

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.9e-17  Score=144.23  Aligned_cols=136  Identities=18%  Similarity=0.296  Sum_probs=106.3

Q ss_pred             CCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCC-CCCcCChhHHhcCCCCcEEECCCCCCccCCCcccccCCCcc
Q psy8029         392 SLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYN-RISSLFDDWISSMTSLKELDLRHNNFSFIPDQLDSIVSNKL  470 (693)
Q Consensus       392 ~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  470 (693)
                      ..+.++.+++.++..     +..+..+++|++|++++| .++.+.+..|.++++|+.|++++|+|+++++.+|..+++|+
T Consensus         9 ~~~~l~c~~~~~~~~-----p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           9 GSSGLRCTRDGALDS-----LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             SSSCEECCSSCCCTT-----TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred             CCCeEEecCCCCccC-----cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccc
Confidence            344566666666543     455667788888888765 58888888888899999999999999998888888889999


Q ss_pred             EEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCcHHHHHHHhcccccceeeeeeeccCcee
Q psy8029         471 TLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSNYDLIRFVSKKMTKTVYQMLELVTDNLE  550 (693)
Q Consensus       471 ~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (693)
                      .|+|++|+|+.++...+...               .++.+++++|||.|+|++.|+..|+.....       ....++++
T Consensus        84 ~L~Ls~N~l~~l~~~~~~~~---------------~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~-------~~~~~~~~  141 (156)
T d2ifga3          84 RLNLSFNALESLSWKTVQGL---------------SLQELVLSGNPLHCSCALRWLQRWEEEGLG-------GVPEQKLQ  141 (156)
T ss_dssp             EEECCSSCCSCCCSTTTCSC---------------CCCEEECCSSCCCCCGGGHHHHHHHHTTCS-------SCGGGCCC
T ss_pred             ceeccCCCCcccChhhhccc---------------cccccccCCCcccCCchHHHHHHHHHhccC-------ccCcCCcE
Confidence            99999999998877766533               377999999999999999999999876432       23345677


Q ss_pred             ecCC
Q psy8029         551 CFGN  554 (693)
Q Consensus       551 c~~~  554 (693)
                      |..|
T Consensus       142 C~~p  145 (156)
T d2ifga3         142 CHGQ  145 (156)
T ss_dssp             CSSS
T ss_pred             ECcC
Confidence            8766

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8.9e-16  Score=137.83  Aligned_cols=115  Identities=18%  Similarity=0.245  Sum_probs=73.6

Q ss_pred             cCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCC
Q psy8029          96 YFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTS  175 (693)
Q Consensus        96 ~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  175 (693)
                      .|.++.++++|+|++| +|+.++ ..+..+++|+.|++++|.|+.++.  |..+++|++|++++|.++.+++..+..+++
T Consensus        13 ~~~n~~~lr~L~L~~n-~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          13 QYTNAVRDRELDLRGY-KIPVIE-NLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             EEECTTSCEEEECTTS-CCCSCC-CGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hccCcCcCcEEECCCC-CCCccC-ccccccccCCEEECCCCCCCccCC--cccCcchhhhhcccccccCCCccccccccc
Confidence            3556666777777777 777775 345566777777777777766643  566777777777777777666665666667


Q ss_pred             CCEEEccCCCCCCCCh-hhcCCCCCCcEEECcCCCCCcCC
Q psy8029         176 LRILNLDHNQLINLTR-AIFNNVPNLRSLDISGNNISILP  214 (693)
Q Consensus       176 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~  214 (693)
                      |++|++++|+++.+.. ..+..+++|++|++++|.++..+
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             cccceeccccccccccccccccccccchhhcCCCcccccc
Confidence            7777777776665543 34555566666666665555443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.9e-15  Score=134.43  Aligned_cols=129  Identities=18%  Similarity=0.231  Sum_probs=85.0

Q ss_pred             hcCCCCCcEEEccCCCCCCCChhhhccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEE
Q psy8029         317 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTV  396 (693)
Q Consensus       317 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  396 (693)
                      |.++.++++|++++|+|+.++. .+..+++|+.|++++|+|+.++....+++|++|++++|.++.+.+..+..+++|+.|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~-~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             ccCcCcCcEEECCCCCCCccCc-cccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            4566677778888887777763 456677777777777777777666677777777777777777766666667777777


Q ss_pred             ECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCCh---hHHhcCCCCcEEE
Q psy8029         397 DLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFD---DWISSMTSLKELD  449 (693)
Q Consensus       397 ~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~  449 (693)
                      ++++|.++...   ....+..+++|++|++++|.++..+.   ..+..+|+|+.||
T Consensus        93 ~L~~N~i~~~~---~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          93 ILTNNSLVELG---DLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSCCCCCGG---GGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eeccccccccc---cccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            77777766432   12345556666666666666655432   2345556666554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=3.3e-14  Score=121.02  Aligned_cols=101  Identities=25%  Similarity=0.339  Sum_probs=46.5

Q ss_pred             EEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCC
Q psy8029         105 HILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHN  184 (693)
Q Consensus       105 ~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  184 (693)
                      +|+|++| +++.++.  ++++++|++|++++|+++++|+. |+.+++|++|++++|.++.++.  +..+++|++|++++|
T Consensus         2 ~L~Ls~n-~l~~l~~--l~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~~N~i~~l~~--~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           2 VLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNN   75 (124)
T ss_dssp             EEECTTS-CCSSCCC--GGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred             EEEcCCC-CCCCCcc--cccCCCCCEEECCCCccCcchhh-hhhhhcccccccccccccccCc--cccccccCeEECCCC
Confidence            4555555 5554432  44455555555555555444432 3445555555555555444421  444444444444444


Q ss_pred             CCCCCCh-hhcCCCCCCcEEECcCCCCC
Q psy8029         185 QLINLTR-AIFNNVPNLRSLDISGNNIS  211 (693)
Q Consensus       185 ~l~~~~~-~~~~~l~~L~~L~L~~n~i~  211 (693)
                      +++.++. ..+..+++|++|++++|.++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            4444332 23344444444444444433

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=4.5e-14  Score=120.19  Aligned_cols=102  Identities=25%  Similarity=0.274  Sum_probs=49.8

Q ss_pred             eEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCC
Q psy8029         349 TLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSY  428 (693)
Q Consensus       349 ~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~  428 (693)
                      .|++++|+++.++....+++|++|++++|.++++++ .|+.+++|+.|++++|.++..      ..+..+++|++|++++
T Consensus         2 ~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l------~~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV------DGVANLPRLQELLLCN   74 (124)
T ss_dssp             EEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCC------GGGTTCSSCCEEECCS
T ss_pred             EEEcCCCCCCCCcccccCCCCCEEECCCCccCcchh-hhhhhhccccccccccccccc------CccccccccCeEECCC
Confidence            344555555544444444455555555555544432 344455555555555555422      2244455555555555


Q ss_pred             CCCCcCCh-hHHhcCCCCcEEECCCCCCcc
Q psy8029         429 NRISSLFD-DWISSMTSLKELDLRHNNFSF  457 (693)
Q Consensus       429 n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~  457 (693)
                      |++++++. ..+..+++|+.|++++|+++.
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            55554432 334455555555555555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.1e-14  Score=144.12  Aligned_cols=61  Identities=23%  Similarity=0.139  Sum_probs=28.3

Q ss_pred             CCCCCCeEeCCCC-ccccccccccCCCCCCcEEECCCC-cCcccccccCCCCccCCCCCcEEECCCC
Q psy8029         365 GLSGLNSLDLSWN-QLEQINLIAFDGLSSLNTVDLSHN-LLTFDEYQYGYSPLKQCVNLETINLSYN  429 (693)
Q Consensus       365 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~l~~L~~L~Ls~n  429 (693)
                      .+++|++|++++| .+++.....+..+++|++|++++| .++..    +...+..+++|+.|+++++
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~----~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE----TLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG----GGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChH----HHHHHhcCCCCCEEeeeCC
Confidence            3445555555543 244444444444555555555553 33322    1223444555555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.1e-14  Score=144.30  Aligned_cols=149  Identities=13%  Similarity=0.126  Sum_probs=86.9

Q ss_pred             cEEEccCCcCccc-ccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEcCCCCCCcc-ChhhhCCCCCCCEEEc
Q psy8029         104 KHILLSHNKEITG-LHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDLGSNDVAYM-DPEIFKNLTSLRILNL  181 (693)
Q Consensus       104 ~~L~Ls~n~~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L  181 (693)
                      +++|++++ .+.. +....+.  .....+.++...+...... .....+|++|+++++.+... ....+..+++|++|++
T Consensus         3 ~~lDLs~~-~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L   78 (284)
T d2astb2           3 QTLDLTGK-NLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL   78 (284)
T ss_dssp             SEEECTTC-BCCHHHHHHHHH--TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             CEEECCCC-CCCchHHHHHHh--ccceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccc
Confidence            47888887 5532 2222222  2355666665554433222 23456889999988876633 2445778888999999


Q ss_pred             cCCCCCCCChhhcCCCCCCcEEECcCC-CCCcCCC-CcCCCCCCCcEEEcCCCc-ccc--CChhhhhcccCceEEEEecC
Q psy8029         182 DHNQLINLTRAIFNNVPNLRSLDISGN-NISILPS-GVFSDLRKLQTFYANSNR-FQM--FPKDLFAEMKYLQVIKISYH  256 (693)
Q Consensus       182 ~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~l~~n~-l~~--~~~~~~~~~~~L~~L~l~~n  256 (693)
                      +++.+++.....++.+++|++|++++| .++.... ..+.++++|++|++++|. ++.  +.......++.|+.|+++++
T Consensus        79 ~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~  158 (284)
T d2astb2          79 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  158 (284)
T ss_dssp             TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             cccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccc
Confidence            988877665666778888888888875 4442111 112456777777777653 321  11111122355666666544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=8.2e-14  Score=142.27  Aligned_cols=206  Identities=22%  Similarity=0.212  Sum_probs=121.1

Q ss_pred             cCCCCCcEEEccCCCCCCCChh----hhccCccCceEeccCCcCccc---------cC------ccCCCCCCeEeCCCCc
Q psy8029         318 RDCKKLVKLELQRNKLKYLPEN----LFESLKELYTLNLKNNQLENI---------TS------LVGLSGLNSLDLSWNQ  378 (693)
Q Consensus       318 ~~~~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~Ls~n~l~~l---------~~------~~~l~~L~~L~Ls~n~  378 (693)
                      ..+++|++|++++|.++.....    .+..+++|+.|++++|.+...         ..      ....+.|+.+++++|.
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            3445555555555555432211    123445566666665554321         00      0345677888888877


Q ss_pred             ccccccc----ccCCCCCCcEEECCCCcCcccccc-cCCCCccCCCCCcEEECCCCCCCcCC----hhHHhcCCCCcEEE
Q psy8029         379 LEQINLI----AFDGLSSLNTVDLSHNLLTFDEYQ-YGYSPLKQCVNLETINLSYNRISSLF----DDWISSMTSLKELD  449 (693)
Q Consensus       379 l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~  449 (693)
                      ++.....    .+...+.|+.|++++|.++..+.. .....+..+++|+.|++++|.++...    ...+..+++|++|+
T Consensus       170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~  249 (344)
T d2ca6a1         170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  249 (344)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             ccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhh
Confidence            7643332    334567788888888887753211 12344667788888888888876532    23456788888888


Q ss_pred             CCCCCCccCCCccc----c--cCCCccEEECCCCCCceeeccchhhhcccCCCCCccccccccCcEEEcCCCcccccCCc
Q psy8029         450 LRHNNFSFIPDQLD----S--IVSNKLTLDLSFNQIAIVDLRTLEIKAAAQDPNEDSTMVARSANIVILNDNPIACNCSN  523 (693)
Q Consensus       450 L~~N~l~~~~~~~~----~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~C~~  523 (693)
                      |++|.|++.....+    .  ..+.++.|++++|+|+......+......         -.+.++.+++++|.+..+...
T Consensus       250 Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~---------~~~~L~~L~l~~N~~~~~~~~  320 (344)
T d2ca6a1         250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE---------KMPDLLFLELNGNRFSEEDDV  320 (344)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH---------HCTTCCEEECTTSBSCTTSHH
T ss_pred             hhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHc---------cCCCCCEEECCCCcCCCcchH
Confidence            88888875322222    1  23568899999998876554444332110         014588999999999765533


Q ss_pred             H-HHHHHHhc
Q psy8029         524 Y-DLIRFVSK  532 (693)
Q Consensus       524 ~-~~~~~~~~  532 (693)
                      . ++...+..
T Consensus       321 ~~~l~~~~~~  330 (344)
T d2ca6a1         321 VDEIREVFST  330 (344)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            2 34444333

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.38  E-value=2.7e-13  Score=138.40  Aligned_cols=239  Identities=16%  Similarity=0.099  Sum_probs=171.8

Q ss_pred             hhcccCceEEEEecCCCccc---ccCccccCCCCCccEEEcCCCCCcccC----------cccccCCCCccEEEecCCCC
Q psy8029         242 FAEMKYLQVIKISYHKDSLK---ELPSGLFANLPLLNTVILGESSIAELP----------SDLFWNSTNITNIVLTGHKK  308 (693)
Q Consensus       242 ~~~~~~L~~L~l~~n~~~~~---~i~~~~~~~l~~L~~L~l~~n~l~~~~----------~~~~~~~~~L~~L~l~~n~~  308 (693)
                      +.....+++|++++|.+...   .+. ..+...+.|+.++++++......          ...+..+++|+.|++++| .
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~-~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n-~  104 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLS-ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-A  104 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHH-HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-C
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHH-HHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc-c
Confidence            67789999999999874321   122 23567889999999987654322          123456789999999999 7


Q ss_pred             CCcCChh----hhcCCCCCcEEEccCCCCCCCChh-------------hhccCccCceEeccCCcCcccc-----Cc-cC
Q psy8029         309 LTSLPST----LFRDCKKLVKLELQRNKLKYLPEN-------------LFESLKELYTLNLKNNQLENIT-----SL-VG  365 (693)
Q Consensus       309 l~~l~~~----~~~~~~~L~~L~l~~n~l~~~~~~-------------~~~~~~~L~~L~Ls~n~l~~l~-----~~-~~  365 (693)
                      ++.....    .+..+++|++|++++|.++.....             .....+.|+.+.+++|.++.-.     .. ..
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~  184 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  184 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             cccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhh
Confidence            7654322    245678999999999987521111             1135678999999999887522     11 56


Q ss_pred             CCCCCeEeCCCCccccc-----cccccCCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHh
Q psy8029         366 LSGLNSLDLSWNQLEQI-----NLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWIS  440 (693)
Q Consensus       366 l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  440 (693)
                      ++.|++|++++|.+...     ....+..+++|+.|++++|.++..+.......+..+++|++|+|++|.|++.....++
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~  264 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  264 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence            78999999999998753     2345677899999999999987653222334567889999999999999875444332


Q ss_pred             ------cCCCCcEEECCCCCCccCCC----ccc-ccCCCccEEECCCCCCcee
Q psy8029         441 ------SMTSLKELDLRHNNFSFIPD----QLD-SIVSNKLTLDLSFNQIAIV  482 (693)
Q Consensus       441 ------~l~~L~~L~L~~N~l~~~~~----~~~-~~l~~L~~L~L~~N~l~~~  482 (693)
                            ..+.|++|++++|+|+.-..    ..+ ...+.|+.|++++|++...
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence                  24689999999999875221    112 2577899999999999753

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.8e-12  Score=113.74  Aligned_cols=106  Identities=18%  Similarity=0.262  Sum_probs=70.5

Q ss_pred             cEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEEEc
Q psy8029          78 NTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVLDL  157 (693)
Q Consensus        78 ~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  157 (693)
                      +.++.+++  .+++++ ..+.++++|++|+++++..++.++.++|.++++|+.|++++|+|+.+++.+|..+++|++|+|
T Consensus        11 ~~l~c~~~--~~~~~p-~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3          11 SGLRCTRD--GALDSL-HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SCEECCSS--CCCTTT-TTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CeEEecCC--CCccCc-ccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            44555555  555554 446666777777776553477777777777777777777777777776667777777777777


Q ss_pred             CCCCCCccChhhhCCCCCCCEEEccCCCCC
Q psy8029         158 GSNDVAYMDPEIFKNLTSLRILNLDHNQLI  187 (693)
Q Consensus       158 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  187 (693)
                      ++|+++.+++..|... +|++|+|++|.+.
T Consensus        88 s~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             cCCCCcccChhhhccc-cccccccCCCccc
Confidence            7777777766665544 5777777777654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.29  E-value=7.4e-15  Score=136.59  Aligned_cols=131  Identities=21%  Similarity=0.285  Sum_probs=89.2

Q ss_pred             cccEEEeecCCCCccCCCCccCCCcccccEEEccCCcCcccccccccCCCCCCcEEEeeCCcccccCcccCCCCCCCcEE
Q psy8029          76 TINTLAFSNSPSNVGVLSPPYFDGLHFVKHILLSHNKEITGLHKDIFKGTPQLESLNLRGNSITELYSGVFQYVPKLQVL  155 (693)
Q Consensus        76 ~L~~L~l~~~~~~i~~l~~~~~~~l~~L~~L~Ls~n~~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  155 (693)
                      ..+.+++.+....++.++ .++..+++|++|+|++| +|+.++.  +.++++|++|++++|.|+.++.. +..+++|++|
T Consensus        24 ~~~~~~l~~~~~~i~~l~-~sl~~L~~L~~L~Ls~n-~I~~i~~--l~~l~~L~~L~Ls~N~i~~i~~~-~~~~~~L~~L   98 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMD-ATLSTLKACKHLALSTN-NIEKISS--LSGMENLRILSLGRNLIKKIENL-DAVADTLEEL   98 (198)
T ss_dssp             TCSCEECCBCCTTCCCCH-HHHHHTTTCCEEECSEE-EESCCCC--HHHHTTCCEEECCEEEECSCSSH-HHHHHHCCEE
T ss_pred             ccceeeeecccCchhhhh-hHHhcccccceeECccc-CCCCccc--ccCCccccChhhccccccccccc-cccccccccc
Confidence            345566654312333443 46777788888888888 7887753  67778888888888888776542 3445678888


Q ss_pred             EcCCCCCCccChhhhCCCCCCCEEEccCCCCCCCCh-hhcCCCCCCcEEECcCCCCCcC
Q psy8029         156 DLGSNDVAYMDPEIFKNLTSLRILNLDHNQLINLTR-AIFNNVPNLRSLDISGNNISIL  213 (693)
Q Consensus       156 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~  213 (693)
                      ++++|.++.+.+  +..+++|++|++++|+++.+.. ..+..+++|++|++++|.+...
T Consensus        99 ~l~~N~i~~l~~--~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_          99 WISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             ECSEEECCCHHH--HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             cccccccccccc--ccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence            888887776632  6677778888888887776643 4567777777777777766543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.27  E-value=4.6e-14  Score=131.14  Aligned_cols=110  Identities=27%  Similarity=0.339  Sum_probs=60.4

Q ss_pred             hccCccCceEeccCCcCccccCccCCCCCCeEeCCCCccccccccccCCCCCCcEEECCCCcCcccccccCCCCccCCCC
Q psy8029         341 FESLKELYTLNLKNNQLENITSLVGLSGLNSLDLSWNQLEQINLIAFDGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVN  420 (693)
Q Consensus       341 ~~~~~~L~~L~Ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~  420 (693)
                      +..+++|++|+|++|+|+.++....+++|++|++++|.|+.+.. .+..++.|+.|++++|.++..      .++..+++
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~L~l~~N~i~~l------~~~~~l~~  116 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASL------SGIEKLVN  116 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSS-HHHHHHHCCEEECSEEECCCH------HHHHHHHH
T ss_pred             HhcccccceeECcccCCCCcccccCCccccChhhcccccccccc-ccccccccccccccccccccc------cccccccc
Confidence            44555555555555555555544555555555555555554432 222234555666666655532      23445566


Q ss_pred             CcEEECCCCCCCcCCh-hHHhcCCCCcEEECCCCCCcc
Q psy8029         421 LETINLSYNRISSLFD-DWISSMTSLKELDLRHNNFSF  457 (693)
Q Consensus       421 L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~  457 (693)
                      |++|++++|+++++.. ..+..+++|+.|++++|++..
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            6666666666665532 345666666666666666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.5e-08  Score=89.82  Aligned_cols=67  Identities=30%  Similarity=0.324  Sum_probs=36.6

Q ss_pred             cCCCCCCcEEEeeCCcccccCc--ccCCCCCCCcEEEcCCCCCCccChhhhCCCCCCCEEEccCCCCCC
Q psy8029         122 FKGTPQLESLNLRGNSITELYS--GVFQYVPKLQVLDLGSNDVAYMDPEIFKNLTSLRILNLDHNQLIN  188 (693)
Q Consensus       122 ~~~l~~L~~L~L~~n~i~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  188 (693)
                      +..+++|++|+|++|+|+.+..  ..+..+++|+.|++++|.++.+.+-.+....+|+.|++++|.+..
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            4455666666666666655432  233455666666666666665544333333455666666665554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=5.3e-08  Score=86.17  Aligned_cols=69  Identities=28%  Similarity=0.165  Sum_probs=35.2

Q ss_pred             CCCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChhHHhcCCCCcEEECCCCCCccC
Q psy8029         388 DGLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDDWISSMTSLKELDLRHNNFSFI  458 (693)
Q Consensus       388 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  458 (693)
                      ..++.|++|+|++|+|+....  ....+..+++|+.|++++|.|+.+.+-.+.....|+.|++++|.+...
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~--~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDD--MSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSG--GGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             HhCCCCCEeeCCCccccCCch--hHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            345555555555555553311  122234455666666666666655443333444566666666665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.88  E-value=4.4e-06  Score=73.80  Aligned_cols=90  Identities=12%  Similarity=0.099  Sum_probs=37.9

Q ss_pred             CCCCCcEEECCCCcCcccccccCCCCccCCCCCcEEECCCCCCCcCChh----HHhcCCCCcEEECCCCCCccCCC----
Q psy8029         389 GLSSLNTVDLSHNLLTFDEYQYGYSPLKQCVNLETINLSYNRISSLFDD----WISSMTSLKELDLRHNNFSFIPD----  460 (693)
Q Consensus       389 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~----  460 (693)
                      ..+.|++|++++|.+...+.......+...+.|++|+|++|.+++....    .+...++|++|++++|++..+..    
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~  121 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM  121 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred             hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHH
Confidence            3344444444444444322111122233344555555555554432211    22234455555555554443321    


Q ss_pred             ---cccccCCCccEEECCCCC
Q psy8029         461 ---QLDSIVSNKLTLDLSFNQ  478 (693)
Q Consensus       461 ---~~~~~l~~L~~L~L~~N~  478 (693)
                         ..+...+.|+.|+++.+.
T Consensus       122 ~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         122 DMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhCCCccEeeCcCCC
Confidence               112234455666665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.88  E-value=4.4e-06  Score=73.80  Aligned_cols=68  Identities=13%  Similarity=0.121  Sum_probs=32.5

Q ss_pred             ccCCCCCcEEECCCCCCCcCC----hhHHhcCCCCcEEECCCCCCccCCC----cccccCCCccEEECCCCCCcee
Q psy8029         415 LKQCVNLETINLSYNRISSLF----DDWISSMTSLKELDLRHNNFSFIPD----QLDSIVSNKLTLDLSFNQIAIV  482 (693)
Q Consensus       415 ~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~  482 (693)
                      +...+.|++|+|++|.+.+..    ...+...+.|++|+|++|.|+.-..    ..+...+.|+.|++++|.+..+
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~  115 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL  115 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCc
Confidence            344455566666665554311    1233345556666666665553211    1223334455666655555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.29  E-value=5e-05  Score=66.71  Aligned_cols=15  Identities=13%  Similarity=0.481  Sum_probs=6.7

Q ss_pred             CCCCcEEECCCCcCc
Q psy8029         390 LSSLNTVDLSHNLLT  404 (693)
Q Consensus       390 l~~L~~L~L~~n~l~  404 (693)
                      .++++.+++++|.++
T Consensus        73 ~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          73 NNTLKSLNVESNFIS   87 (166)
T ss_dssp             CSSCCEEECCSSCCC
T ss_pred             cccchhhhhcccccc
Confidence            344444444444444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.08  E-value=5.2e-05  Score=66.58  Aligned_cols=41  Identities=17%  Similarity=0.229  Sum_probs=19.9

Q ss_pred             cCCCCCcEEECCCCCCCcCCh----hHHhcCCCCcEEECCCCCCc
Q psy8029         416 KQCVNLETINLSYNRISSLFD----DWISSMTSLKELDLRHNNFS  456 (693)
Q Consensus       416 ~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~  456 (693)
                      ..++.|++|++++|.++....    ..+...++++.+++++|.+.
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            344555555555555543221    22334455555555555554