Psyllid ID: psy8031

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
Protein Sequence
MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR
Secondary Structure (PSIPRED)
ccccccccccccccEEccccccccccccccccccccccccEEEccccccccccHHHccccccccEEcccccccccccccccccccccccEEEcccccccccccHHccccccccEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHccccccEEEEEccccccccccccHHHccccccEEEccccccccccccHHHccccccEEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccc
Coil and Loop (DISEMBL)
MFPKDLFAEMKYLQVIKISYHkdslkelpsglfanlpllntvilgessiaelpsdlfwnstnitnivltghkkltslpstlfrDCKKLVKLELQRNKLKYLPENLFESLKELYTLNlknnqlenitr
Flexible Loop (DISEMBL)
MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKElytlnlknnqlenitr
Low Complexity Region (SEG)
MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR
Disordered region (IsUnstruct)
*****LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK*********
Disordered Region (DISOPRED)
MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT*
Disordered Region (DISEMBL)
MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR
Disordered Region (DISPRO)
MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	127	2.2.26 [Sep-21-2011]
P08953	1097	Protein toll OS=Drosophil	yes	N/A	0.968	0.112	0.392	2e-13
O08770	567	Platelet glycoprotein V O	yes	N/A	0.921	0.206	0.310	4e-09
Q9DBB9	547	Carboxypeptidase N subuni	yes	N/A	0.952	0.221	0.338	5e-09
Q6EMK4	673	Vasorin OS=Homo sapiens G	yes	N/A	0.779	0.147	0.31	8e-09
Q9WVB4	1523	Slit homolog 3 protein OS	no	N/A	0.881	0.073	0.300	1e-08
Q8TF66	581	Leucine-rich repeat-conta	no	N/A	0.960	0.209	0.278	1e-08
O88280	1523	Slit homolog 3 protein OS	no	N/A	0.881	0.073	0.300	1e-08
Q9CZT5	673	Vasorin OS=Mus musculus G	no	N/A	0.787	0.148	0.306	3e-08
Q9N0E3	473	Reticulon-4 receptor OS=M	N/A	N/A	0.763	0.205	0.336	4e-08
Q80WD0	445	Reticulon-4 receptor-like	no	N/A	0.818	0.233	0.342	5e-08

>sp|P08953|TOLL_DROME Protein toll OS=Drosophila melanogaster GN=Tl PE=1 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 71/125 (56%), Gaps = 2/125 (1%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
            P+ LF   K+L  +++  ++  L  LPS LFAN P L  + L  + +  LP DLF +ST
Sbjct: 284 LPQGLFDHNKHLNEVRLMNNRVPLATLPSRLFANQPELQILRL-RAELQSLPGDLFEHST 342

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
            ITNI L G   L +LP+TL      L+ L+L  N+L +LP++LF     L  L L++N 
Sbjct: 343 QITNISL-GDNLLKTLPATLLEHQVNLLSLDLSNNRLTHLPDSLFAHTTNLTDLRLEDNL 401

Query: 122 LENIT 126
           L  I+
Sbjct: 402 LTGIS 406

Component of the extracellular signaling pathway that establishes the dorsal-ventral pathway of the embryo. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Promotes heterophilic cellular adhesion. Spz C-106 in the hemolymph controls expression of the antifungal peptide Drosomycin (Drs) by acting as a ligand of Tl and inducing an intracellular signaling pathway.
Drosophila melanogaster (taxid: 7227)

>sp|O08770|GPV_RAT Platelet glycoprotein V OS=Rattus norvegicus GN=Gp5 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
            P   F  +  LQ + ++ +   L  LP G+F  L  L  + +  +++ ELP D      
Sbjct: 305 LPAAAFRNLSGLQTLGLTRNP-LLSALPPGMFHGLTELRVLAVHTNALEELPEDALRGLG 363

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
            +  + L  H +L +LP TLFR+   LV ++L+ N+LK LP ++F +L +L  + L +N
Sbjct: 364 RLRQVSLR-HNRLRALPRTLFRNLSSLVTVQLEHNQLKTLPGDVFAALPQLTRVLLGHN 421

The GPIb-V-IX complex functions as the vWF receptor and mediates vWF-dependent platelet adhesion to blood vessels. The adhesion of platelets to injured vascular surfaces in the arterial circulation is a critical initiating event in hemostasis.

Rattus norvegicus (taxid: 10116)

>sp|Q9DBB9|CPN2_MOUSE Carboxypeptidase N subunit 2 OS=Mus musculus GN=Cpn2 PE=1 SV=2

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 3/124 (2%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
            P  LF+ +  L  +  S   ++L+ LP GLFA+   L  + L  + +  +P   F N +
Sbjct: 256 LPVSLFSSLHNLTFL--SLKDNALRTLPEGLFAHNQGLLHLSLSYNQLETIPEGAFTNLS 313

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
            + ++ L+ H  +T LP  +FR+ ++LVKL L  N L  L   LF +L  L  LNL  NQ
Sbjct: 314 RLVSLTLS-HNAITDLPEHVFRNLEQLVKLSLDSNNLTALHPALFHNLSRLQLLNLSRNQ 372

Query: 122 LENI 125
           L  +
Sbjct: 373 LTTL 376

The 83 kDa subunit binds and stabilizes the catalytic subunit at 37 degrees Celsius and keeps it in circulation. Under some circumstances it may be an allosteric modifier of the catalytic subunit.

Mus musculus (taxid: 10090)

>sp|Q6EMK4|VASN_HUMAN Vasorin OS=Homo sapiens GN=VASN PE=1 SV=1

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 60/100 (60%), Gaps = 1/100 (1%)

Query: 22  KDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81
           ++ +  L +G FA LP L  + L ++ IA LPS +F    N++N+ LT + +L  + +  
Sbjct: 61  ENGITMLDAGSFAGLPGLQLLDLSQNQIASLPSGVFQPLANLSNLDLTAN-RLHEITNET 119

Query: 82  FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
           FR  ++L +L L +N+++++    F++L  L  L L++N+
Sbjct: 120 FRGLRRLERLYLGKNRIRHIQPGAFDTLDRLLELKLQDNE 159

May act as an inhibitor of TGF-beta signaling.

Homo sapiens (taxid: 9606)

>sp|Q9WVB4|SLIT3_MOUSE Slit homolog 3 protein OS=Mus musculus GN=Slit3 PE=2 SV=2

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 65/113 (57%), Gaps = 1/113 (0%)

Query: 15  VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL 74
           +++I   ++S+K +P+G F     L  + + ++ I+++  D F    ++T++VL G+ K+
Sbjct: 309 IVEIRLEQNSIKSIPAGAFTQYKKLKRIDISKNQISDIAPDAFQGLKSLTSLVLYGN-KI 367

Query: 75  TSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
           T +P  LF     L  L L  NK+  L  N F+ L+ L  L+L +N+L+ I++
Sbjct: 368 TEIPKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTISK 420

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Mus musculus (taxid: 10090)

>sp|Q8TF66|LRC15_HUMAN Leucine-rich repeat-containing protein 15 OS=Homo sapiens GN=LRRC15 PE=1 SV=2

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 25/147 (17%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
            P  +F  M+  Q+ +++   +SLKEL  G+F  +P L  + L ++ I+ LP ++F N  
Sbjct: 260 LPPSVF--MQLPQLNRLTLFGNSLKELSPGIFGPMPNLRELWLYDNHISSLPDNVFSNLR 317

Query: 62  NITNIVLTGHK-----------------------KLTSLPSTLFRDCKKLVKLELQRNKL 98
            +  ++L+ ++                        L  L   +FR    L  + LQ N+L
Sbjct: 318 QLQVLILSRNQISFISPGAFNGLTELRELSLHTNALQDLDGNVFRMLANLQNISLQNNRL 377

Query: 99  KYLPENLFESLKELYTLNLKNNQLENI 125
           + LP N+F ++  L  + L+NNQLEN+
Sbjct: 378 RQLPGNIFANVNGLMAIQLQNNQLENL 404

Homo sapiens (taxid: 9606)

>sp|O88280|SLIT3_RAT Slit homolog 3 protein OS=Rattus norvegicus GN=Slit3 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 65/113 (57%), Gaps = 1/113 (0%)

Query: 15  VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL 74
           +++I   ++S+K +P+G F     L  + + ++ I+++  D F    ++T++VL G+ K+
Sbjct: 309 IVEIRLEQNSIKSIPAGAFIQYKKLKRIDISKNQISDIAPDAFQGLKSLTSLVLYGN-KI 367

Query: 75  TSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
           T +P  LF     L  L L  NK+  L  N F+ L+ L  L+L +N+L+ I++
Sbjct: 368 TEIPKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTISK 420

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Rattus norvegicus (taxid: 10116)

>sp|Q9CZT5|VASN_MOUSE Vasorin OS=Mus musculus GN=Vasn PE=2 SV=2

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 57/101 (56%), Gaps = 1/101 (0%)

Query: 22  KDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81
           ++ +  L  G FA LP L  + L ++ I  LP  +F    N++N+ LT + KL  + +  
Sbjct: 62  ENGITTLDVGCFAGLPGLQLLDLSQNQITSLPGGIFQPLVNLSNLDLTAN-KLHEISNET 120

Query: 82  FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           FR  ++L +L L +N+++++    F++L  L  L L +N+L
Sbjct: 121 FRGLRRLERLYLGKNRIRHIQPGAFDALDRLLELKLPDNEL 161

May act as an inhibitor of TGF-beta signaling.

Mus musculus (taxid: 10090)

>sp|Q9N0E3|RTN4R_MACFA Reticulon-4 receptor OS=Macaca fascicularis GN=RTN4R PE=2 SV=1

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 1/98 (1%)

Query: 25  LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD 84
           L+EL  GLF  L  L  + L ++++  LP D F +  N+T++ L G+ +++S+P   FR 
Sbjct: 142 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRG 200

Query: 85  CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
              L +L L +N++ ++  + F  L  L TL L  N L
Sbjct: 201 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFRNNL 238

Receptor for RTN4, OMG and MAG. Mediates axonal growth inhibition and may play a role in regulating axonal regeneration and plasticity in the adult central nervous system. Acts in conjunction with RTN4 and LIGO1 in regulating neuronal precursor cell motility during cortical development.

Macaca fascicularis (taxid: 9541)

>sp|Q80WD0|R4RL1_RAT Reticulon-4 receptor-like 1 OS=Rattus norvegicus GN=Rtn4rl1 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 1/105 (0%)

Query: 21  HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80
           +K  L  LP+G+F  L  L  + L ++ I  L  D+F +  N++++ L G+ KL SL   
Sbjct: 133 YKCGLSSLPAGIFGGLHSLQYLYLQDNHIEYLQDDIFVDLVNLSHLFLHGN-KLWSLGQG 191

Query: 81  LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           +FR    L +L L  N+L+++    F  L  L TL L NN L  +
Sbjct: 192 IFRGLVNLDRLLLHENQLQWVHHKAFHDLHRLTTLFLFNNSLTEL 236

May play a role in regulating axonal regeneration and plasticity in the adult central nervous system.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
194745081	1098	GF16456 [Drosophila ananassae] gi|190628	0.968	0.112	0.424	4e-15
156545700	1050	PREDICTED: protein toll [Nasonia vitripe	0.968	0.117	0.403	8e-15
307210111	1094	Protein toll [Harpegnathos saltator]	0.976	0.113	0.384	3e-13
332031266	1016	Protein toll [Acromyrmex echinatior]	0.976	0.122	0.376	1e-12
194907829	1097	GG11504 [Drosophila erecta] gi|190656275	0.968	0.112	0.392	1e-12
195113121	1104	GI22147 [Drosophila mojavensis] gi|19391	0.968	0.111	0.392	2e-12
195349768	653	GM10345 [Drosophila sechellia] gi|194123	0.968	0.188	0.4	2e-12
284010539	259	variable lymphocyte receptor A [Eptatret	0.913	0.447	0.411	3e-12
195061331	1111	GH14238 [Drosophila grimshawi] gi|193891	0.968	0.110	0.392	3e-12
345479829	1028	PREDICTED: protein toll [Nasonia vitripe	0.960	0.118	0.430	4e-12

>gi|194745081|ref|XP_001955021.1| GF16456 [Drosophila ananassae] gi|190628058|gb|EDV43582.1| GF16456 [Drosophila ananassae]

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 76/125 (60%), Gaps = 2/125 (1%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
            P+ LF    +LQ ++IS ++  L  LPS LFANLP L  + L ++ +  LP DL   ST
Sbjct: 286 LPEGLFEHNTHLQQVRISNNRAKLTTLPSRLFANLPELKVLFL-KTDLESLPGDLLEGST 344

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
            ITNI L  ++ LT+LP+ L      L+ L+L  N+L +LP+ +FE  KEL  LNL++N 
Sbjct: 345 GITNISLASNR-LTTLPAKLLEYQSNLLSLDLSHNQLTHLPDGIFEHNKELKDLNLESNY 403

Query: 122 LENIT 126
           L  I+
Sbjct: 404 LTGIS 408

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156545700|ref|XP_001604577.1| PREDICTED: protein toll [Nasonia vitripennis]

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 1/124 (0%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
            P+ LF     L  +K+  +K +L ELP+GLFANL  L +V++  + +  LP DLFW +T
Sbjct: 274 LPRGLFRNNPKLVSVKLLSNKRNLTELPAGLFANLTNLKSVVMTRAGLLSLPEDLFWGAT 333

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
           N+ N+ +     L SLP  +F++  +L  L L  N L  LPE LFE   +L  L+L NN+
Sbjct: 334 NLRNLSID-RNYLASLPQKIFQNSTELYSLSLSFNVLDELPERLFEYATKLSKLDLSNNR 392

Query: 122 LENI 125
           L +I
Sbjct: 393 LTSI 396

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307210111|gb|EFN86808.1| Protein toll [Harpegnathos saltator]

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 72/125 (57%), Gaps = 1/125 (0%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
           P+DL      L  + IS ++ +L  LPSG F+N   L  + L  +    LP DLFW + +
Sbjct: 284 PRDLLRNNTKLLNVTISQNRANLTTLPSGFFSNYTQLKVLKLTWNDFTTLPEDLFWGTFS 343

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +T I LT ++ L SLP  +FRD ++L  LEL  N+L+ LP  +F +  +L TLNL  N++
Sbjct: 344 LTQISLTKNR-LKSLPQYIFRDARQLKSLELDMNELEELPNYIFTTTNQLLTLNLSKNRI 402

Query: 123 ENITR 127
             I +
Sbjct: 403 TFIPK 407

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332031266|gb|EGI70800.1| Protein toll [Acromyrmex echinatior]

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 71/125 (56%), Gaps = 1/125 (0%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
           P++L      L  + +  +K ++  LP+  FANL  L  + L ++    LP DLFW  T+
Sbjct: 215 PRNLLQNNTKLYTVSLFDNKRNMTTLPNKFFANLTELKVLKLRKNGFVTLPEDLFWGCTS 274

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           ++NI L     L +LP  +FRD KKL KLEL  N L+ LP+N+F +   L  L+L  N++
Sbjct: 275 LSNITLE-RNYLRTLPVHIFRDLKKLEKLELNFNDLETLPDNIFSNTNRLVNLDLSKNRI 333

Query: 123 ENITR 127
             I+R
Sbjct: 334 TFISR 338

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194907829|ref|XP_001981637.1| GG11504 [Drosophila erecta] gi|190656275|gb|EDV53507.1| GG11504 [Drosophila erecta]

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 75/125 (60%), Gaps = 2/125 (1%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
            P+ LF   K+L  +++  ++  L  LPS LFAN P L  + L  + +  LP DLF +ST
Sbjct: 284 LPQGLFDHNKHLNEVRLMNNRVPLATLPSRLFANQPELKILRL-RADLQSLPGDLFEHST 342

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
            ITNI L G   L++LP+TL      L+ L+L  N+L +LP++LF+    L  L+L++N 
Sbjct: 343 QITNISL-GDNMLSTLPATLLEHQVNLLSLDLSNNRLTHLPDSLFQHTTSLTDLHLEDNL 401

Query: 122 LENIT 126
           L +I+
Sbjct: 402 LTDIS 406

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195113121|ref|XP_002001117.1| GI22147 [Drosophila mojavensis] gi|193917711|gb|EDW16578.1| GI22147 [Drosophila mojavensis]

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 72/125 (57%), Gaps = 2/125 (1%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
            P  LF   K L+ +K+  ++  L  LP+ LFA+LP L T+ L    +  LP DL  NS 
Sbjct: 283 LPAGLFEHNKQLEQVKLQNNRVPLPTLPARLFADLPRLRTLYL-RCELESLPEDLIENSK 341

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
           NIT+I L  +  L++LP+ L      LV L+L +N+L +LP+ +F  L +L  LNL  N+
Sbjct: 342 NITDISLMDNH-LSTLPAKLLEHQVNLVTLDLHKNRLSHLPDGIFSHLSKLENLNLAENR 400

Query: 122 LENIT 126
           L  I+
Sbjct: 401 LTEIS 405

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195349768|ref|XP_002041414.1| GM10345 [Drosophila sechellia] gi|194123109|gb|EDW45152.1| GM10345 [Drosophila sechellia]

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 73/125 (58%), Gaps = 2/125 (1%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
            P+ LF   K+L  +++  ++  L  LPS LFAN P L  + L  + +  LPSDLF +ST
Sbjct: 284 LPQGLFDHNKHLNEVRLMNNRVPLATLPSRLFANQPELKILRL-RADLQSLPSDLFEHST 342

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
            ITNI L G   L++LP+TL      L+ L+L  N+L +LP++LF     L  L L++N 
Sbjct: 343 QITNISL-GDNLLSTLPATLLEHQVNLLSLDLSNNRLTHLPDSLFAHTTNLTDLRLEDNL 401

Query: 122 LENIT 126
           L  I+
Sbjct: 402 LTGIS 406

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|284010539|dbj|BAI66749.1| variable lymphocyte receptor A [Eptatretus burgeri]

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 72/119 (60%), Gaps = 3/119 (2%)

Query: 7   FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
           F  MK L  + +  ++  L+ LP+G+F +L  LN + LG + +  LP  +F   T ITN+
Sbjct: 60  FHGMKELTYLGLEGNR--LQTLPTGVFDHLVNLNELRLGTNQLESLPQGIFDKLTKITNL 117

Query: 67  VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
            L+G+K L SLP  +F    +L  L+LQ N+LK +PE  F+ L EL TL L NNQL ++
Sbjct: 118 DLSGNK-LQSLPHGVFDKLAELKTLDLQTNQLKRVPEGAFDKLTELKTLRLDNNQLRSV 175

Source: Eptatretus burgeri

Species: Eptatretus burgeri

Genus: Eptatretus

Family: Myxinidae

Order: Myxiniformes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195061331|ref|XP_001995975.1| GH14238 [Drosophila grimshawi] gi|193891767|gb|EDV90633.1| GH14238 [Drosophila grimshawi]

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 73/125 (58%), Gaps = 2/125 (1%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
            P+ LF   K LQ +K+  ++  L  LP+ LFANLP L T+ L    +  L +DL  NST
Sbjct: 285 LPEGLFEHNKMLQQVKLQNNRVPLANLPARLFANLPELRTLYL-RCELETLAADLIENST 343

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
            +T+I L  ++ L++LP+        L+ L+L +N L +LP+ +F  L +L TLNL  NQ
Sbjct: 344 ALTDISLYDNR-LSTLPAKFLEQQLNLINLDLHKNLLSHLPDGIFHHLVKLETLNLAENQ 402

Query: 122 LENIT 126
           L  I+
Sbjct: 403 LTEIS 407

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479829|ref|XP_001604871.2| PREDICTED: protein toll [Nasonia vitripennis]

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 69/123 (56%), Gaps = 1/123 (0%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
           P DLF     L+V+K+ Y+K +L  LPS  F+NL  L  V L  + I  LP DLFW STN
Sbjct: 276 PADLFLYNPKLKVVKLLYNKCNLTTLPSRFFSNLTNLKDVTLMRNGIHYLPEDLFWYSTN 335

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           I  + L     L +LP  LF+D  +L  L L  N L+YL   +F S K+L  L+L  N+L
Sbjct: 336 IVKLNL-NRNYLQTLPFNLFKDITELETLTLFFNDLQYLDAGIFFSNKKLRKLDLSKNRL 394

Query: 123 ENI 125
             I
Sbjct: 395 RFI 397

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
FB|FBgn0262473	1097	Tl "Toll" [Drosophila melanoga	0.960	0.111	0.395	1.5e-14
MGI|MGI:1919006	547	Cpn2 "carboxypeptidase N, poly	0.937	0.217	0.346	8.7e-12
UNIPROTKB|P22792	545	CPN2 "Carboxypeptidase N subun	0.944	0.220	0.325	1.8e-11
FB|FBgn0259677	1639	CG42346 [Drosophila melanogast	0.921	0.071	0.346	3.8e-11
UNIPROTKB|F1RR92	1340	SLIT3 "Uncharacterized protein	0.881	0.083	0.300	2.2e-10
WB|WBGene00002282	773	let-4 [Caenorhabditis elegans	0.952	0.156	0.314	2.9e-10
UNIPROTKB|F1MMM6	1339	SLIT3 "Uncharacterized protein	0.881	0.083	0.300	3.5e-10
UNIPROTKB|Q8WXD0	754	RXFP2 "Relaxin receptor 2" [Ho	0.960	0.161	0.333	3.5e-10
MGI|MGI:1315202	1523	Slit3 "slit homolog 3 (Drosoph	0.881	0.073	0.300	4.1e-10
RGD|69311	1523	Slit3 "slit homolog 3 (Drosoph	0.881	0.073	0.300	5.2e-10

FB|FBgn0262473 Tl "Toll" [Drosophila melanogaster (taxid:7227)]

 Score = 199 (75.1 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 49/124 (39%), Positives = 71/124 (57%)

Query:     3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
             P+ LF   K+L  +++  ++  L  LPS LFAN P L  + L  + +  LP DLF +ST 
Sbjct:   285 PQGLFDHNKHLNEVRLMNNRVPLATLPSRLFANQPELQILRL-RAELQSLPGDLFEHSTQ 343

Query:    63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
             ITNI L G   L +LP+TL      L+ L+L  N+L +LP++LF     L  L L++N L
Sbjct:   344 ITNISL-GDNLLKTLPATLLEHQVNLLSLDLSNNRLTHLPDSLFAHTTNLTDLRLEDNLL 402

Query:   123 ENIT 126
               I+
Sbjct:   403 TGIS 406

GO:0019730 "antimicrobial humoral response" evidence=IGI

GO:0019732 "antifungal humoral response" evidence=IMP

GO:0006963 "positive regulation of antibacterial peptide biosynthetic process" evidence=IMP

GO:0006967 "positive regulation of antifungal peptide biosynthetic process" evidence=IMP

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA;NAS

GO:0008063 "Toll signaling pathway" evidence=IEA;NAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0006952 "defense response" evidence=NAS;TAS

GO:0009950 "dorsal/ventral axis specification" evidence=IMP;NAS;TAS

GO:0030097 "hemopoiesis" evidence=TAS

GO:0007416 "synapse assembly" evidence=IMP

GO:0006955 "immune response" evidence=TAS

GO:0009620 "response to fungus" evidence=TAS

GO:0016021 "integral to membrane" evidence=NAS

GO:0009880 "embryonic pattern specification" evidence=TAS

GO:0070976 "TIR domain binding" evidence=IPI

GO:0009617 "response to bacterium" evidence=NAS

GO:0050832 "defense response to fungus" evidence=TAS

GO:0045087 "innate immune response" evidence=IDA;NAS;TAS

GO:0019955 "cytokine binding" evidence=TAS

GO:0050830 "defense response to Gram-positive bacterium" evidence=IEA;TAS

GO:0035007 "regulation of melanization defense response" evidence=TAS

GO:0035172 "hemocyte proliferation" evidence=IMP;TAS

GO:0000910 "cytokinesis" evidence=IMP

GO:0007352 "zygotic specification of dorsal/ventral axis" evidence=IEA;NAS

GO:0045610 "regulation of hemocyte differentiation" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0043234 "protein complex" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0033565 "ESCRT-0 complex" evidence=IDA

GO:0016201 "synaptic target inhibition" evidence=IMP

GO:0009897 "external side of plasma membrane" evidence=IDA

MGI|MGI:1919006 Cpn2 "carboxypeptidase N, polypeptide 2" [Mus musculus (taxid:10090)]

 Score = 169 (64.5 bits), Expect = 8.7e-12, P = 8.7e-12
 Identities = 43/124 (34%), Positives = 67/124 (54%)

Query:     3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFA-NLPLLNTVILGESSIAELPSDLFWNST 61
             P  LF+ +  L  + +    ++L+ LP GLFA N  LL+ + L  + +  +P   F N +
Sbjct:   257 PVSLFSSLHNLTFLSLK--DNALRTLPEGLFAHNQGLLH-LSLSYNQLETIPEGAFTNLS 313

Query:    62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
              + ++ L+ H  +T LP  +FR+ ++LVKL L  N L  L   LF +L  L  LNL  NQ
Sbjct:   314 RLVSLTLS-HNAITDLPEHVFRNLEQLVKLSLDSNNLTALHPALFHNLSRLQLLNLSRNQ 372

Query:   122 LENI 125
             L  +
Sbjct:   373 LTTL 376

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P22792 CPN2 "Carboxypeptidase N subunit 2" [Homo sapiens (taxid:9606)]

 Score = 166 (63.5 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 40/123 (32%), Positives = 71/123 (57%)

Query:     3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
             P  +FA +  L  + + ++   L+ LP+GLFA+ P L  + L  + +  +    F + +N
Sbjct:   257 PLSIFASLGNLTFLSLQWNM--LRVLPAGLFAHTPCLVGLSLTHNQLETVAEGTFAHLSN 314

Query:    63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
             + +++L+ +  +T LP+ +FRD ++LVKL L  N L  L   LF++L +L  L+L  NQL
Sbjct:   315 LRSLMLS-YNAITHLPAGIFRDLEELVKLYLGSNNLTALHPALFQNLSKLELLSLSKNQL 373

Query:   123 ENI 125
               +
Sbjct:   374 TTL 376

GO:0050821 "protein stabilization" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0030234 "enzyme regulator activity" evidence=NAS

GO:0050790 "regulation of catalytic activity" evidence=NAS

FB|FBgn0259677 CG42346 [Drosophila melanogaster (taxid:7227)]

 Score = 169 (64.5 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 43/124 (34%), Positives = 71/124 (57%)

Query:     3 PKDLFAEMKYLQVIKISY-HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
             PK +F + K LQ + +S+ H  ++     G+F+NLP L  V L E++I ELP+D F NST
Sbjct:   347 PK-VFEKNKRLQTVDLSHNHIHTI----GGVFSNLPQLREVFLSENNILELPADAFTNST 401

Query:    62 NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
             N+  I L  +  +  +   +F     L  L L+ N +  LP  LF+   +L +L+L NN+
Sbjct:   402 NVDVIYLESNA-IAHIDPNVFSTLVNLDHLYLRSNFIPLLPVTLFDKSTKLTSLSLDNNE 460

Query:   122 LENI 125
             ++++
Sbjct:   461 IQDL 464

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1RR92 SLIT3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 161 (61.7 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 34/113 (30%), Positives = 66/113 (58%)

Query:    15 VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL 74
             +++I   ++S+K +P+G F     L  + + ++ I+++ +D F    ++T++VL G+K +
Sbjct:   123 IVEIRLEQNSIKSIPAGAFTQYKKLKRIDISKNQISDIAADAFQGLKSLTSLVLYGNK-I 181

Query:    75 TSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
             T +P  LF     L  L L  NK+  L  N F+ L+ L  L+L +N+L+ I++
Sbjct:   182 TEIPKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTISK 234

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=IEA

GO:0061364 "apoptotic process involved in luteolysis" evidence=IEA

GO:0051414 "response to cortisol stimulus" evidence=IEA

GO:0050919 "negative chemotaxis" evidence=IEA

GO:0048846 "axon extension involved in axon guidance" evidence=IEA

GO:0048495 "Roundabout binding" evidence=IEA

GO:0035385 "Roundabout signaling pathway" evidence=IEA

GO:0032870 "cellular response to hormone stimulus" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0009887 "organ morphogenesis" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

WB|WBGene00002282 let-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 157 (60.3 bits), Expect = 2.9e-10, P = 2.9e-10
 Identities = 39/124 (31%), Positives = 69/124 (55%)

Query:     3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
             P      +K LQ + +  HK+ +++L +  F NLP+LN + L  + I EL    F N  +
Sbjct:   200 PSSAIRGLKQLQSLHL--HKNRIEQLDALNFLNLPVLNLLNLAGNQIHELNRQAFLNVPS 257

Query:    63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
             +  + L+G+K +T L +  F+  ++L  L+L  N++  +P N    LK+L  L L +N++
Sbjct:   258 LRYLYLSGNK-ITKLTAYQFQTFEQLEMLDLTNNEIGAIPANSLSGLKQLRQLYLAHNKI 316

Query:   123 ENIT 126
              NI+
Sbjct:   317 SNIS 320

GO:0016021 "integral to membrane" evidence=IEA

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IGI;IMP

GO:0002064 "epithelial cell development" evidence=IMP

GO:0035150 "regulation of tube size" evidence=IMP

GO:0045177 "apical part of cell" evidence=IDA

UNIPROTKB|F1MMM6 SLIT3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 159 (61.0 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 34/113 (30%), Positives = 65/113 (57%)

Query:    15 VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL 74
             +++I   ++S+K +P+G F     L  + + ++ I+++  D F    ++T++VL G+K +
Sbjct:   123 IVEIRLEQNSIKSIPAGAFTQYKKLKRIDISKNQISDIAPDAFQGLKSLTSLVLYGNK-I 181

Query:    75 TSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
             T +P  LF     L  L L  NK+  L  N F+ L+ L  L+L +N+L+ I++
Sbjct:   182 TEIPKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQSLSLLSLYDNKLQTISK 234

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=IEA

GO:0061364 "apoptotic process involved in luteolysis" evidence=IEA

GO:0051414 "response to cortisol stimulus" evidence=IEA

GO:0050919 "negative chemotaxis" evidence=IEA

GO:0048846 "axon extension involved in axon guidance" evidence=IEA

GO:0048495 "Roundabout binding" evidence=IEA

GO:0035385 "Roundabout signaling pathway" evidence=IEA

GO:0032870 "cellular response to hormone stimulus" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0009887 "organ morphogenesis" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|Q8WXD0 RXFP2 "Relaxin receptor 2" [Homo sapiens (taxid:9606)]

 Score = 156 (60.0 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 42/126 (33%), Positives = 68/126 (53%)

Query:     3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
             PK + A+M  L  + +  ++  +K L +  F +   L  + L  + I  +P   F +  N
Sbjct:   249 PKQMCAQMPQLNWVDLEGNR--IKYLTNSTFLSCDSLTVLFLPRNQIGFVPEKTFSSLKN 306

Query:    63 ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
             +  + L+ +  +T L   LF+D K L KL L  N L YL +N FESLK+L +L+L+  ++
Sbjct:   307 LGELDLSSNT-ITELSPHLFKDLKLLQKLNLSSNPLMYLHKNQFESLKQLQSLDLERIEI 365

Query:   123 ENI-TR 127
              NI TR
Sbjct:   366 PNINTR 371

GO:0016021 "integral to membrane" evidence=IEA

GO:0001556 "oocyte maturation" evidence=IEA

GO:0007189 "adenylate cyclase-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007193 "adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0008584 "male gonad development" evidence=IEA

GO:0016500 "protein-hormone receptor activity" evidence=IEA

GO:0017046 "peptide hormone binding" evidence=IEA

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

MGI|MGI:1315202 Slit3 "slit homolog 3 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 159 (61.0 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 34/113 (30%), Positives = 65/113 (57%)

Query:    15 VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL 74
             +++I   ++S+K +P+G F     L  + + ++ I+++  D F    ++T++VL G+K +
Sbjct:   309 IVEIRLEQNSIKSIPAGAFTQYKKLKRIDISKNQISDIAPDAFQGLKSLTSLVLYGNK-I 367

Query:    75 TSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
             T +P  LF     L  L L  NK+  L  N F+ L+ L  L+L +N+L+ I++
Sbjct:   368 TEIPKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTISK 420

GO:0005102 "receptor binding" evidence=TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007411 "axon guidance" evidence=ISO;IDA

GO:0008285 "negative regulation of cell proliferation" evidence=IGI

GO:0009887 "organ morphogenesis" evidence=IGI;IMP

GO:0010629 "negative regulation of gene expression" evidence=IGI

GO:0016020 "membrane" evidence=ISO

GO:0030154 "cell differentiation" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0035385 "Roundabout signaling pathway" evidence=ISO

GO:0048495 "Roundabout binding" evidence=ISO

GO:0048846 "axon extension involved in axon guidance" evidence=ISO

GO:0050919 "negative chemotaxis" evidence=ISO

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=ISO

RGD|69311 Slit3 "slit homolog 3 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 158 (60.7 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 34/113 (30%), Positives = 65/113 (57%)

Query:    15 VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL 74
             +++I   ++S+K +P+G F     L  + + ++ I+++  D F    ++T++VL G+K +
Sbjct:   309 IVEIRLEQNSIKSIPAGAFIQYKKLKRIDISKNQISDIAPDAFQGLKSLTSLVLYGNK-I 367

Query:    75 TSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
             T +P  LF     L  L L  NK+  L  N F+ L+ L  L+L +N+L+ I++
Sbjct:   368 TEIPKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTISK 420

GO:0003674 "molecular_function" evidence=ND

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA;ISO

GO:0007411 "axon guidance" evidence=ISO

GO:0007420 "brain development" evidence=IEP

GO:0008285 "negative regulation of cell proliferation" evidence=IEA;ISO

GO:0009887 "organ morphogenesis" evidence=IEA;ISO

GO:0010629 "negative regulation of gene expression" evidence=IEA;ISO

GO:0016020 "membrane" evidence=IDA

GO:0021510 "spinal cord development" evidence=IEP

GO:0030154 "cell differentiation" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA;ISO

GO:0032870 "cellular response to hormone stimulus" evidence=IEA;ISO

GO:0035385 "Roundabout signaling pathway" evidence=IEA;ISO

GO:0048495 "Roundabout binding" evidence=IEA;ISO

GO:0048846 "axon extension involved in axon guidance" evidence=IEA;ISO

GO:0050919 "negative chemotaxis" evidence=IEA;ISO

GO:0051414 "response to cortisol stimulus" evidence=IEA;ISO

GO:0061364 "apoptotic process involved in luteolysis" evidence=IEA;ISO

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0021834 "chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	127
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	1e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	6e-04
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	0.004

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 23  DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82
            S+  +    F+    L ++ L  SS+  + S  F+N +++T+I +     LTS+    F
Sbjct: 20  SSVTSIGEYAFSGCTSLKSITLP-SSLTSIGSYAFYNCSSLTSITI--PSSLTSIGEYAF 76

Query: 83  RDCKKLVKLELQRNKLKYLPENLFE--SLKELY 113
            +C  L  + +  + L  +    F   SLK + 
Sbjct: 77  SNCSSLTSITIP-SNLTTIGSYAFSNCSLKSIT 108

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 1e-05
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 73  KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +LT +P   F+    L  L+L  N L  +    F  L  L +L+L  N L
Sbjct: 11  RLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 37.8 bits (87), Expect = 6e-04
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 16/125 (12%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
            P++L  E++YL V     + +S++ LP+ L + +  LN      +S+  LP  L     
Sbjct: 277 LPENLPEELRYLSV-----YDNSIRTLPAHLPSGITHLNVQ---SNSLTALPETLPPG-- 326

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY-TLNLKNN 120
                +  G   LTSLP++L     +L  L++ +N++  LPE L  ++  L  + N   N
Sbjct: 327 --LKTLEAGENALTSLPASL---PPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTN 381

Query: 121 QLENI 125
             EN+
Sbjct: 382 LPENL 386

Length = 754

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 34.4 bits (80), Expect = 0.004
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 24/102 (23%)

Query: 7   FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
           F+    L+ I +     SL  + S  F N   L ++ +  SS+  +    F N +++T+I
Sbjct: 30  FSGCTSLKSITLP---SSLTSIGSYAFYNCSSLTSITI-PSSLTSIGEYAFSNCSSLTSI 85

Query: 67  VL--------------------TGHKKLTSLPSTLFRDCKKL 88
            +                    T    +T++    F +C  L
Sbjct: 86  TIPSNLTTIGSYAFSNCSLKSITIPSSVTTIGDYAFSNCSSL 127

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	127
KOG4194|consensus	873		99.68
KOG4194|consensus	873		99.65
KOG4237|consensus	498		99.59
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.51
KOG4237|consensus	498		99.5
KOG0617|consensus	264		99.49
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.42
KOG0617|consensus	264		99.42
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.41
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.4
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.37
KOG0472|consensus	565		99.32
KOG0472|consensus	565		99.31
KOG0444|consensus	1255		99.31
KOG0444|consensus	1255		99.29
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.26
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	99.23
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.08
KOG0618|consensus	1081		99.05
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	99.02
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.01
PLN03150	623	hypothetical protein; Provisional	99.0
KOG0532|consensus	722		98.97
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.97
KOG0618|consensus	1081		98.9
KOG1259|consensus	490		98.87
KOG0532|consensus	722		98.85
KOG1259|consensus	490		98.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.79
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.75
PLN03150	623	hypothetical protein; Provisional	98.71
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.71
KOG4579|consensus	177		98.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.66
KOG1644|consensus	233		98.65
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.64
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.57
KOG1644|consensus	233		98.52
KOG4579|consensus	177		98.51
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.44
KOG1859|consensus	1096		98.43
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.38
KOG1859|consensus	1096		98.38
KOG0531|consensus	414		98.38
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.37
KOG4658|consensus	889		98.34
KOG0531|consensus	414		98.29
KOG4658|consensus	889		98.16
KOG3207|consensus	505		98.14
KOG1909|consensus	382		98.1
KOG3207|consensus	505		98.07
KOG1909|consensus	382		97.89
KOG3665|consensus	699		97.66
KOG3665|consensus	699		97.6
PRK15386	426	type III secretion protein GogB; Provisional	97.33
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.11
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.08
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.02
KOG2982|consensus	418		96.98
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.93
smart00370	26	LRR Leucine-rich repeats, outliers.	96.72
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	96.72
KOG2123|consensus	388		96.62
KOG2123|consensus	388		96.59
KOG2739|consensus	260		96.59
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	96.58
smart00370	26	LRR Leucine-rich repeats, outliers.	96.58
KOG2982|consensus	418		96.55
KOG2739|consensus	260		96.25
PRK15386	426	type III secretion protein GogB; Provisional	96.13
KOG2120|consensus	419		95.98
KOG2120|consensus	419		95.5
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	94.47
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	93.57
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.57
KOG0473|consensus	326		92.39
KOG0473|consensus	326		92.37
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.61
KOG3864|consensus	221		90.5
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	87.69

>KOG4194|consensus

Probab=99.68  E-value=9.6e-18  Score=113.98  Aligned_cols=124  Identities=17%  Similarity=0.329  Sum_probs=86.0

Q ss_pred             CCchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecch
Q psy8031           1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST   80 (127)
Q Consensus         1 ~i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~   80 (127)
                      ++|..+|..+++|+.|++-.|.+.  .+.-..|.++++++.+.+..|.+..+.+++|.++..++.+++. .|+++.+..+
T Consensus       211 tLp~r~Fk~L~~L~~LdLnrN~ir--ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~-~N~l~~vn~g  287 (873)
T KOG4194|consen  211 TLPQRSFKRLPKLESLDLNRNRIR--IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLE-TNRLQAVNEG  287 (873)
T ss_pred             ccCHHHhhhcchhhhhhcccccee--eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecc-cchhhhhhcc
Confidence            356666776777777777666654  4444456666666666667777777776677777777777777 7777777665


Q ss_pred             hhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccCC
Q psy8031          81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR  127 (127)
Q Consensus        81 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~  127 (127)
                      +..+++.|++++++.|.+..+..+.|.-+++|.+|+++.|.|+.+++
T Consensus       288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~  334 (873)
T KOG4194|consen  288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE  334 (873)
T ss_pred             cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence            55667777777777777776666656677788888888888777663

>KOG4194|consensus

Probab=99.65  E-value=1.5e-17  Score=113.11  Aligned_cols=118  Identities=21%  Similarity=0.348  Sum_probs=60.2

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      +.+|+|..|.+++.|+++.|++.  .+..+..-++..|+.|+++.|++..+..+....++.|++|+++ .|++++++++.
T Consensus       260 L~DG~Fy~l~kme~l~L~~N~l~--~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs-~N~i~~l~~~s  336 (873)
T KOG4194|consen  260 LDDGAFYGLEKMEHLNLETNRLQ--AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLS-SNRITRLDEGS  336 (873)
T ss_pred             ccCcceeeecccceeecccchhh--hhhcccccccchhhhhccchhhhheeecchhhhcccceeEecc-ccccccCChhH
Confidence            34555666666666666666544  4544444455555555555555555444433444555555555 55555555544


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcc
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL  122 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i  122 (127)
                      |..+..|+.++++.|.++++.+.+|..+++|+.|++++|.+
T Consensus       337 f~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l  377 (873)
T KOG4194|consen  337 FRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL  377 (873)
T ss_pred             HHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence            44444455555555554444444444444444444444433

>KOG4237|consensus

Probab=99.59  E-value=9.5e-17  Score=104.59  Aligned_cols=114  Identities=25%  Similarity=0.417  Sum_probs=96.8

Q ss_pred             ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031          11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK   90 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~   90 (127)
                      +....+.+..|+|.  .+|+++|..+++|+++++++|+++.|.+.+|.++.++..+.+.++|+|+.++..+|.++.+++.
T Consensus        67 ~~tveirLdqN~I~--~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   67 PETVEIRLDQNQIS--SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR  144 (498)
T ss_pred             CcceEEEeccCCcc--cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence            34677889999887  8999999999999999999999999988889998887776666258999999999998888888


Q ss_pred             EEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        91 l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      +.+.-|.+.-+...+|.+++++..|.+..|.+..++
T Consensus       145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~  180 (498)
T KOG4237|consen  145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSIC  180 (498)
T ss_pred             HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhc
Confidence            888888888888888888888888888888877664

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.51  E-value=4.8e-14  Score=84.31  Aligned_cols=113  Identities=22%  Similarity=0.274  Sum_probs=46.0

Q ss_pred             cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCC
Q psy8031           8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKK   87 (127)
Q Consensus         8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~   87 (127)
                      .++.++++|++.+|+++  .+.. .-..+.+++.+++++|.++.+..  +..++.|+.|+++ +|.++.+.......+++
T Consensus        16 ~n~~~~~~L~L~~n~I~--~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~-~N~I~~i~~~l~~~lp~   89 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIS--TIEN-LGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLS-NNRISSISEGLDKNLPN   89 (175)
T ss_dssp             ----------------------S---TT-TT--EEE-TTS--S--TT------TT--EEE---SS---S-CHHHHHH-TT
T ss_pred             ccccccccccccccccc--cccc-hhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccC-CCCCCccccchHHhCCc
Confidence            34567899999999987  6653 32357889999999999998874  6778999999999 99999987654345789


Q ss_pred             CcEEEecCccccccCh-hhhcCCccccEEeccCCcccccC
Q psy8031          88 LVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        88 l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      |+.+++++|.+.++.+ ..++.+++|+.+++.+|+++.-+
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~  129 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK  129 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh
Confidence            9999999999987655 34567899999999999998643

>KOG4237|consensus

Probab=99.50  E-value=3e-16  Score=102.30  Aligned_cols=118  Identities=23%  Similarity=0.376  Sum_probs=107.4

Q ss_pred             CCchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecC-CcccccChhhhcCCCCCcEEEecCCCCCeeecc
Q psy8031           1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGE-SSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS   79 (127)
Q Consensus         1 ~i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~   79 (127)
                      .||+++|..+++|+.|++++|+|+  .|.+.+|.+++.+..+.+-+ |++++++.++|.++..++.|.+. -+++.-+..
T Consensus        81 ~iP~~aF~~l~~LRrLdLS~N~Is--~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN-an~i~Cir~  157 (498)
T KOG4237|consen   81 SIPPGAFKTLHRLRRLDLSKNNIS--FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN-ANHINCIRQ  157 (498)
T ss_pred             cCChhhccchhhhceecccccchh--hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC-hhhhcchhH
Confidence            489999999999999999999988  99999999999987777665 99999999999999999999999 999999999


Q ss_pred             hhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCc
Q psy8031          80 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ  121 (127)
Q Consensus        80 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~  121 (127)
                      .+|..++++..+.+..|.+..++...|.++..++.+.+..|+
T Consensus       158 ~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  158 DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            999999999999999999998888777888888888877775

>KOG0617|consensus

Probab=99.49  E-value=1e-15  Score=90.41  Aligned_cols=117  Identities=31%  Similarity=0.497  Sum_probs=67.7

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCe--eecc
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT--SLPS   79 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~--~~~~   79 (127)
                      +|+.+ +.+.+|+.|.+++|++.  ++|..+ +.++.++.+.+..|++..+|.+ |+.++.|+.+++. .|++.  .+|.
T Consensus        48 vppni-a~l~nlevln~~nnqie--~lp~~i-ssl~klr~lnvgmnrl~~lprg-fgs~p~levldlt-ynnl~e~~lpg  121 (264)
T KOG0617|consen   48 VPPNI-AELKNLEVLNLSNNQIE--ELPTSI-SSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLT-YNNLNENSLPG  121 (264)
T ss_pred             cCCcH-HHhhhhhhhhcccchhh--hcChhh-hhchhhhheecchhhhhcCccc-cCCCchhhhhhcc-ccccccccCCc
Confidence            44554 45666677777777665  666655 5666677777776666666654 6666777777776 55543  2333


Q ss_pred             hhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          80 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        80 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      . |-.++.++.++++.|.+..+|.++ +.+++|+.+.+..|.+-++|
T Consensus       122 n-ff~m~tlralyl~dndfe~lp~dv-g~lt~lqil~lrdndll~lp  166 (264)
T KOG0617|consen  122 N-FFYMTTLRALYLGDNDFEILPPDV-GKLTNLQILSLRDNDLLSLP  166 (264)
T ss_pred             c-hhHHHHHHHHHhcCCCcccCChhh-hhhcceeEEeeccCchhhCc
Confidence            3 223444555555555555555554 45555555555555544443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.42  E-value=4.1e-13  Score=67.28  Aligned_cols=59  Identities=31%  Similarity=0.532  Sum_probs=34.4

Q ss_pred             cceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCC
Q psy8031          12 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKK   73 (127)
Q Consensus        12 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~   73 (127)
                      +|+.|++++|++.  .++++.|.+++.|+++++++|.++.+++..|.++++|+.++++ +|+
T Consensus         2 ~L~~L~l~~n~l~--~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~-~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLT--EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLS-NNN   60 (61)
T ss_dssp             TESEEEETSSTES--EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEET-SSS
T ss_pred             cCcEEECCCCCCC--ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCc-CCc
Confidence            4555666666544  5565555666666666666666665555555555566666555 543

...

>KOG0617|consensus

Probab=99.42  E-value=5.7e-15  Score=87.25  Aligned_cols=118  Identities=25%  Similarity=0.498  Sum_probs=102.6

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccc--cChhhhcCCCCCcEEEecCCCCCeeecc
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE--LPSDLFWNSTNITNIVLTGHKKLTSLPS   79 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~~~~~l~~l~l~~~n~~~~~~~   79 (127)
                      +|..+ +.+++|+.|.+..|.+.  .+|.+ |+.++.++.+|++.|++.+  +|.. |-.+..|+.+.++ +|.++.+|+
T Consensus        71 lp~~i-ssl~klr~lnvgmnrl~--~lprg-fgs~p~levldltynnl~e~~lpgn-ff~m~tlralyl~-dndfe~lp~  144 (264)
T KOG0617|consen   71 LPTSI-SSLPKLRILNVGMNRLN--ILPRG-FGSFPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLG-DNDFEILPP  144 (264)
T ss_pred             cChhh-hhchhhhheecchhhhh--cCccc-cCCCchhhhhhccccccccccCCcc-hhHHHHHHHHHhc-CCCcccCCh
Confidence            45555 77999999999999976  77776 4999999999999999884  4544 5568899999999 999999999


Q ss_pred             hhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccCC
Q psy8031          80 TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR  127 (127)
Q Consensus        80 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~  127 (127)
                      .+ +.+++++.+.++.|.+-++|..+ +.++.|+++++.+|.++-+|+
T Consensus       145 dv-g~lt~lqil~lrdndll~lpkei-g~lt~lrelhiqgnrl~vlpp  190 (264)
T KOG0617|consen  145 DV-GKLTNLQILSLRDNDLLSLPKEI-GDLTRLRELHIQGNRLTVLPP  190 (264)
T ss_pred             hh-hhhcceeEEeeccCchhhCcHHH-HHHHHHHHHhcccceeeecCh
Confidence            87 77899999999999999999986 899999999999999988773

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.41  E-value=6.8e-13  Score=66.45  Aligned_cols=59  Identities=31%  Similarity=0.512  Sum_probs=39.8

Q ss_pred             CCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCcc
Q psy8031          38 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNK   97 (127)
Q Consensus        38 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~   97 (127)
                      +++++++++|+++.+++..|.++++|+.++++ +|.+..+++..|.++++|+.+++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~-~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLS-NNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEET-SSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEcc-CCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            46666676666666666666666666777776 666666666666666666666666664

...

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.40  E-value=2.2e-12  Score=94.75  Aligned_cols=44  Identities=20%  Similarity=0.375  Sum_probs=22.0

Q ss_pred             hhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCccc
Q psy8031           6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA   50 (127)
Q Consensus         6 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~   50 (127)
                      .|..++.|+.|++++|++. +.+|.+.|..+.+|+++++++|.++
T Consensus        88 ~~~~l~~L~~L~Ls~n~~~-~~ip~~~~~~l~~L~~L~Ls~n~l~  131 (968)
T PLN00113         88 AIFRLPYIQTINLSNNQLS-GPIPDDIFTTSSSLRYLNLSNNNFT  131 (968)
T ss_pred             HHhCCCCCCEEECCCCccC-CcCChHHhccCCCCCEEECcCCccc
Confidence            3445555555555555542 3455544444455555555444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.37  E-value=3.1e-12  Score=94.01  Aligned_cols=112  Identities=21%  Similarity=0.233  Sum_probs=51.7

Q ss_pred             hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031           7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK   86 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~   86 (127)
                      +.++++|+.|++++|.+. +.+| ..+..+++|++|++++|.+....+..+..+.+|+.++++ .|.+....+..+..++
T Consensus       160 ~~~l~~L~~L~L~~n~l~-~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~-~n~l~~~~p~~l~~l~  236 (968)
T PLN00113        160 IGSFSSLKVLDLGGNVLV-GKIP-NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG-YNNLSGEIPYEIGGLT  236 (968)
T ss_pred             HhcCCCCCEEECccCccc-ccCC-hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc-CCccCCcCChhHhcCC
Confidence            345555555555555542 1222 233455555555555555543322234445555555555 5444432222234445


Q ss_pred             CCcEEEecCcccc-ccChhhhcCCccccEEeccCCcc
Q psy8031          87 KLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQL  122 (127)
Q Consensus        87 ~l~~l~l~~n~~~-~~~~~~~~~~~~l~~l~l~~n~i  122 (127)
                      +|+.+++++|.+. .+|.. ++++++|+.|++++|.+
T Consensus       237 ~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l  272 (968)
T PLN00113        237 SLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKL  272 (968)
T ss_pred             CCCEEECcCceeccccChh-HhCCCCCCEEECcCCee
Confidence            5555555555443 22222 34444455555544443

>KOG0472|consensus

Probab=99.32  E-value=5.4e-13  Score=87.81  Aligned_cols=117  Identities=21%  Similarity=0.360  Sum_probs=96.7

Q ss_pred             chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031           3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF   82 (127)
Q Consensus         3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~   82 (127)
                      ++.....++++..|++++|-++  ++|.+. +.+..++.++++.|+|..+|...+ -...++.+-.+ +|++..++++..
T Consensus       427 v~~~l~~l~kLt~L~L~NN~Ln--~LP~e~-~~lv~Lq~LnlS~NrFr~lP~~~y-~lq~lEtllas-~nqi~~vd~~~l  501 (565)
T KOG0472|consen  427 VPLELSQLQKLTFLDLSNNLLN--DLPEEM-GSLVRLQTLNLSFNRFRMLPECLY-ELQTLETLLAS-NNQIGSVDPSGL  501 (565)
T ss_pred             chHHHHhhhcceeeecccchhh--hcchhh-hhhhhhheecccccccccchHHHh-hHHHHHHHHhc-cccccccChHHh
Confidence            3445567889999999999877  999887 557779999999999998887532 23445566666 789999988766


Q ss_pred             ccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        83 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      .++.++..+++.+|.+..+|+.. ++|++++++.+.+|+++ .|
T Consensus       502 ~nm~nL~tLDL~nNdlq~IPp~L-gnmtnL~hLeL~gNpfr-~P  543 (565)
T KOG0472|consen  502 KNMRNLTTLDLQNNDLQQIPPIL-GNMTNLRHLELDGNPFR-QP  543 (565)
T ss_pred             hhhhhcceeccCCCchhhCChhh-ccccceeEEEecCCccC-CC
Confidence            78899999999999999999985 99999999999999998 44

>KOG0472|consensus

Probab=99.31  E-value=5.3e-14  Score=92.43  Aligned_cols=114  Identities=27%  Similarity=0.451  Sum_probs=61.1

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      +|+.+ +++.+|..|++.+|++.  .+|.  |.++..+.+++++.|++.-+|....++++++..+|+. +|.+..+|.+.
T Consensus       198 lP~~l-g~l~~L~~LyL~~Nki~--~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLR-dNklke~Pde~  271 (565)
T KOG0472|consen  198 LPPEL-GGLESLELLYLRRNKIR--FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLR-DNKLKEVPDEI  271 (565)
T ss_pred             CChhh-cchhhhHHHHhhhcccc--cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeecc-ccccccCchHH
Confidence            34444 44555555555555543  4442  3555555555555555555555544555555555555 55555555554


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                       +-+.++.++++++|.++.+|... +++ .|+.+.+.+|+++.
T Consensus       272 -clLrsL~rLDlSNN~is~Lp~sL-gnl-hL~~L~leGNPlrT  311 (565)
T KOG0472|consen  272 -CLLRSLERLDLSNNDISSLPYSL-GNL-HLKFLALEGNPLRT  311 (565)
T ss_pred             -HHhhhhhhhcccCCccccCCccc-ccc-eeeehhhcCCchHH
Confidence             33445555556555555555552 555 55555555555544

>KOG0444|consensus

Probab=99.31  E-value=4.8e-13  Score=92.72  Aligned_cols=111  Identities=25%  Similarity=0.445  Sum_probs=68.8

Q ss_pred             cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCC
Q psy8031           8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKK   87 (127)
Q Consensus         8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~   87 (127)
                      +.++.|+.+.+..|++....+|+++|. +..|..+|+++|++.++|.. +-...+.-.|+++ .|.+.++|...|..++.
T Consensus        75 s~Lp~LRsv~~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS-~N~IetIPn~lfinLtD  151 (1255)
T KOG0444|consen   75 SDLPRLRSVIVRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLS-YNNIETIPNSLFINLTD  151 (1255)
T ss_pred             ccchhhHHHhhhccccccCCCCchhcc-cccceeeecchhhhhhcchh-hhhhcCcEEEEcc-cCccccCCchHHHhhHh
Confidence            345555566666666554456666643 66666666666666666654 2334555666666 66666666666666666


Q ss_pred             CcEEEecCccccccChhhhcCCccccEEeccCCcc
Q psy8031          88 LVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL  122 (127)
Q Consensus        88 l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i  122 (127)
                      |-.+++++|.+..+|+.+ ..+..|..|.+++|++
T Consensus       152 LLfLDLS~NrLe~LPPQ~-RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  152 LLFLDLSNNRLEMLPPQI-RRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             HhhhccccchhhhcCHHH-HHHhhhhhhhcCCChh
Confidence            666666666666666664 5666666666666644

>KOG0444|consensus

Probab=99.29  E-value=5.7e-13  Score=92.34  Aligned_cols=118  Identities=28%  Similarity=0.473  Sum_probs=94.0

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      ||+++|. +.-|..|++|+|++.  +.|.++ ..-.+...|++++|++..||...|-++.-|-.|+++ +|++..+|++.
T Consensus        95 iP~diF~-l~dLt~lDLShNqL~--EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS-~NrLe~LPPQ~  169 (1255)
T KOG0444|consen   95 IPTDIFR-LKDLTILDLSHNQLR--EVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS-NNRLEMLPPQI  169 (1255)
T ss_pred             CCchhcc-cccceeeecchhhhh--hcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc-cchhhhcCHHH
Confidence            7888987 789999999999976  888876 778889999999999999998888888899999999 99999999986


Q ss_pred             hccCCCCcEEEecCcccccc--------------------------ChhhhcCCccccEEeccCCcccccC
Q psy8031          82 FRDCKKLVKLELQRNKLKYL--------------------------PENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~--------------------------~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                       ..+..|+.+.+++|.+..+                          |..+ ..+.+|..++++.|.+..+|
T Consensus       170 -RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl-d~l~NL~dvDlS~N~Lp~vP  238 (1255)
T KOG0444|consen  170 -RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL-DDLHNLRDVDLSENNLPIVP  238 (1255)
T ss_pred             -HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch-hhhhhhhhccccccCCCcch
Confidence             6677788888888766432                          2221 23455666777777666665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.26  E-value=1.7e-11  Score=73.44  Aligned_cols=104  Identities=23%  Similarity=0.299  Sum_probs=53.6

Q ss_pred             CCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecc-hhhccCCC
Q psy8031           9 EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TLFRDCKK   87 (127)
Q Consensus         9 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~-~~~~~~~~   87 (127)
                      .+.+++.|++++|++.  .++.  +..++.|+.|++++|+++.+.......+++|+.|.++ +|.+..+.. ..+..+++
T Consensus        40 ~l~~L~~L~Ls~N~I~--~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~-~N~I~~l~~l~~L~~l~~  114 (175)
T PF14580_consen   40 TLDKLEVLDLSNNQIT--KLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS-NNKISDLNELEPLSSLPK  114 (175)
T ss_dssp             T-TT--EEE-TTS--S----TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-T-TS---SCCCCGGGGG-TT
T ss_pred             hhcCCCEEECCCCCCc--cccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc-CCcCCChHHhHHHHcCCC
Confidence            4678999999999987  7764  5789999999999999999876533458999999999 999987755 33457899


Q ss_pred             CcEEEecCccccccCh---hhhcCCccccEEec
Q psy8031          88 LVKLELQRNKLKYLPE---NLFESLKELYTLNL  117 (127)
Q Consensus        88 l~~l~l~~n~~~~~~~---~~~~~~~~l~~l~l  117 (127)
                      |+.+++.+|.++.-+.   .++..+++|+.||-
T Consensus       115 L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  115 LRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             --EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             cceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            9999999999986544   34456788888875

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=99.23  E-value=7.4e-11  Score=67.45  Aligned_cols=111  Identities=16%  Similarity=0.353  Sum_probs=78.5

Q ss_pred             CCchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecch
Q psy8031           1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST   80 (127)
Q Consensus         1 ~i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~   80 (127)
                      +|+..+|.++.+|+.+.+.. .+.  .++...|..+..++.+.+..+ +..++...|..+..++.+.+. . .+..++..
T Consensus         2 ~i~~~~F~~~~~l~~i~~~~-~~~--~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~-~-~~~~i~~~   75 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFPN-TIK--KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP-N-NLKSIGDN   75 (129)
T ss_dssp             EE-TTTTTT-TT--EEEETS-T----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET-S-TT-EE-TT
T ss_pred             EECHHHHhCCCCCCEEEECC-Cee--EeChhhccccccccccccccc-ccccceeeeeccccccccccc-c-cccccccc
Confidence            36889999999999999985 444  899999999999999999884 888888889998889999998 6 77888888


Q ss_pred             hhccCCCCcEEEecCccccccChhhhcCCccccEEeccC
Q psy8031          81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN  119 (127)
Q Consensus        81 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~  119 (127)
                      .|..+.+++.+.+..+ +..++...|.++ .+..+.+..
T Consensus        76 ~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   76 AFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            8988899999999775 778888778887 888888765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.08  E-value=7.1e-10  Score=79.50  Aligned_cols=100  Identities=26%  Similarity=0.437  Sum_probs=61.8

Q ss_pred             cceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEE
Q psy8031          12 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL   91 (127)
Q Consensus        12 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l   91 (127)
                      .++.|++++|.+.  .+|...+   .+|+.|++++|+++.+|...   ..+|+.|+++ +|.+..+|....   .+|+.|
T Consensus       200 ~L~~L~Ls~N~Lt--sLP~~l~---~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls-~N~L~~LP~~l~---s~L~~L  267 (754)
T PRK15370        200 QITTLILDNNELK--SLPENLQ---GNIKTLYANSNQLTSIPATL---PDTIQEMELS-INRITELPERLP---SALQSL  267 (754)
T ss_pred             CCcEEEecCCCCC--cCChhhc---cCCCEEECCCCccccCChhh---hccccEEECc-CCccCcCChhHh---CCCCEE
Confidence            4677777777765  6766553   46777777777777666542   2356666776 666666655432   356666


Q ss_pred             EecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          92 ELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        92 ~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      ++++|.++.+|..++   ..|+.|++++|.++.+|
T Consensus       268 ~Ls~N~L~~LP~~l~---~sL~~L~Ls~N~Lt~LP  299 (754)
T PRK15370        268 DLFHNKISCLPENLP---EELRYLSVYDNSIRTLP  299 (754)
T ss_pred             ECcCCccCccccccC---CCCcEEECCCCccccCc
Confidence            776666666665431   35666666666666554

>KOG0618|consensus

Probab=99.05  E-value=4.4e-11  Score=85.42  Aligned_cols=110  Identities=22%  Similarity=0.323  Sum_probs=80.0

Q ss_pred             hhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccC
Q psy8031           6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC   85 (127)
Q Consensus         6 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~   85 (127)
                      ++.+...|+.|++++|+++  .+|+..+..+..|+.|++++|+++.++.. ...+..|+.|... +|.+..+|.  +..+
T Consensus       378 ~l~~~~hLKVLhLsyNrL~--~fpas~~~kle~LeeL~LSGNkL~~Lp~t-va~~~~L~tL~ah-sN~l~~fPe--~~~l  451 (1081)
T KOG0618|consen  378 VLVNFKHLKVLHLSYNRLN--SFPASKLRKLEELEELNLSGNKLTTLPDT-VANLGRLHTLRAH-SNQLLSFPE--LAQL  451 (1081)
T ss_pred             hhccccceeeeeecccccc--cCCHHHHhchHHhHHHhcccchhhhhhHH-HHhhhhhHHHhhc-CCceeechh--hhhc
Confidence            3456778888888888876  88888888888888888888888888754 4557777887777 788877773  3556


Q ss_pred             CCCcEEEecCccccccChhhhcCCccccEEeccCCc
Q psy8031          86 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ  121 (127)
Q Consensus        86 ~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~  121 (127)
                      +.++.++++.|.++.+-...--..++|++|++++|.
T Consensus       452 ~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  452 PQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             CcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            788888888887764322211233678888888874

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=99.02  E-value=2.3e-09  Score=61.21  Aligned_cols=104  Identities=20%  Similarity=0.406  Sum_probs=68.4

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      |+..+|.+++.++.+.+.++ +.  .++..+|..+..++.+.+.. .+..++...|..+..++.+.++ .+ +..++...
T Consensus        26 I~~~~F~~~~~l~~i~~~~~-~~--~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~-~~-~~~i~~~~   99 (129)
T PF13306_consen   26 IGENAFSNCTSLKSINFPNN-LT--SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP-SN-ITEIGSSS   99 (129)
T ss_dssp             E-TTTTTT-TT-SEEEESST-TS--CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET-TT--BEEHTTT
T ss_pred             eChhhccccccccccccccc-cc--ccceeeeecccccccccccc-cccccccccccccccccccccC-cc-ccEEchhh
Confidence            57789999999999999885 55  89999999998999999976 7778888889989999999998 75 88899988


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCCcccc
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESLKELY  113 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~  113 (127)
                      |.++ .++.+.+.. .+..++...|.++++|.
T Consensus       100 f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen  100 FSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             TTT--T--EEE-TT-B-SS----GGG------
T ss_pred             hcCC-CceEEEECC-CccEECCccccccccCC
Confidence            9887 899988875 66778888888887763

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.01  E-value=6.8e-10  Score=79.60  Aligned_cols=88  Identities=24%  Similarity=0.419  Sum_probs=59.5

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      +|...+   .+|+.|++++|.+.  .+|...   ...|+.|++++|++..+|....   ..|+.|+++ +|.+..+|...
T Consensus       214 LP~~l~---~nL~~L~Ls~N~Lt--sLP~~l---~~~L~~L~Ls~N~L~~LP~~l~---s~L~~L~Ls-~N~L~~LP~~l  281 (754)
T PRK15370        214 LPENLQ---GNIKTLYANSNQLT--SIPATL---PDTIQEMELSINRITELPERLP---SALQSLDLF-HNKISCLPENL  281 (754)
T ss_pred             CChhhc---cCCCEEECCCCccc--cCChhh---hccccEEECcCCccCcCChhHh---CCCCEEECc-CCccCcccccc
Confidence            444443   46888888888866  777654   3467788888888887776532   467778888 77777776543


Q ss_pred             hccCCCCcEEEecCccccccChh
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPEN  104 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~  104 (127)
                      +   .+|+.|++++|.++.+|..
T Consensus       282 ~---~sL~~L~Ls~N~Lt~LP~~  301 (754)
T PRK15370        282 P---EELRYLSVYDNSIRTLPAH  301 (754)
T ss_pred             C---CCCcEEECCCCccccCccc
Confidence            2   4677777777777766543

>PLN03150 hypothetical protein; Provisional

Probab=99.00  E-value=3.1e-09  Score=75.25  Aligned_cols=106  Identities=17%  Similarity=0.209  Sum_probs=80.1

Q ss_pred             cceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEE
Q psy8031          12 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL   91 (127)
Q Consensus        12 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l   91 (127)
                      .++.|++++|.+. +.+|.. +..++.|+.|++++|.+....+..+..++.|+.|+++ +|.+....+..+..+++|+.+
T Consensus       419 ~v~~L~L~~n~L~-g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs-~N~lsg~iP~~l~~L~~L~~L  495 (623)
T PLN03150        419 FIDGLGLDNQGLR-GFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS-YNSFNGSIPESLGQLTSLRIL  495 (623)
T ss_pred             EEEEEECCCCCcc-ccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECC-CCCCCCCCchHHhcCCCCCEE
Confidence            3677889999875 455554 5889999999999999984333347888999999999 998885545556788999999


Q ss_pred             EecCcccc-ccChhhhcC-CccccEEeccCCc
Q psy8031          92 ELQRNKLK-YLPENLFES-LKELYTLNLKNNQ  121 (127)
Q Consensus        92 ~l~~n~~~-~~~~~~~~~-~~~l~~l~l~~n~  121 (127)
                      ++++|.+. .+|..+ +. ..++..+++.+|.
T Consensus       496 ~Ls~N~l~g~iP~~l-~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        496 NLNGNSLSGRVPAAL-GGRLLHRASFNFTDNA  526 (623)
T ss_pred             ECcCCcccccCChHH-hhccccCceEEecCCc
Confidence            99999876 677764 33 3456677777763

>KOG0532|consensus

Probab=98.97  E-value=4.3e-11  Score=81.83  Aligned_cols=108  Identities=27%  Similarity=0.554  Sum_probs=59.1

Q ss_pred             cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCC-------------
Q psy8031           8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL-------------   74 (127)
Q Consensus         8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~-------------   74 (127)
                      .++..|+.++++.|+++  .+|.++ +.+ .|+.+.+++|+++.+|... +...++..++.+ .|.+             
T Consensus       118 ~~L~~lt~l~ls~NqlS--~lp~~l-C~l-pLkvli~sNNkl~~lp~~i-g~~~tl~~ld~s-~nei~slpsql~~l~sl  191 (722)
T KOG0532|consen  118 CNLEALTFLDLSSNQLS--HLPDGL-CDL-PLKVLIVSNNKLTSLPEEI-GLLPTLAHLDVS-KNEIQSLPSQLGYLTSL  191 (722)
T ss_pred             hhhhHHHHhhhccchhh--cCChhh-hcC-cceeEEEecCccccCCccc-ccchhHHHhhhh-hhhhhhchHHhhhHHHH
Confidence            34555555666666654  555544 222 2555555566555555442 234445555555 4444             


Q ss_pred             ----------eeecchhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031          75 ----------TSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        75 ----------~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                                ..+|++. . .-.|..++++.|++..+|.. |..++.|+.|-|.+|++++
T Consensus       192 r~l~vrRn~l~~lp~El-~-~LpLi~lDfScNkis~iPv~-fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  192 RDLNVRRNHLEDLPEEL-C-SLPLIRLDFSCNKISYLPVD-FRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             HHHHHhhhhhhhCCHHH-h-CCceeeeecccCceeecchh-hhhhhhheeeeeccCCCCC
Confidence                      4454443 2 23455666666666666666 4666666667666666654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.97  E-value=3e-09  Score=76.41  Aligned_cols=81  Identities=22%  Similarity=0.283  Sum_probs=43.3

Q ss_pred             cceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh----------
Q psy8031          12 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL----------   81 (127)
Q Consensus        12 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~----------   81 (127)
                      +++.|++.+|++.  .+|.    ..++|++|++++|+++.+|..    .++|+.|++. .|.+..++...          
T Consensus       223 ~L~~L~L~~N~Lt--~LP~----lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls-~N~L~~Lp~lp~~L~~L~Ls~  291 (788)
T PRK15387        223 HITTLVIPDNNLT--SLPA----LPPELRTLEVSGNQLTSLPVL----PPGLLELSIF-SNPLTHLPALPSGLCKLWIFG  291 (788)
T ss_pred             CCCEEEccCCcCC--CCCC----CCCCCcEEEecCCccCcccCc----ccccceeecc-CCchhhhhhchhhcCEEECcC
Confidence            4666677777655  5654    246677777777777766531    2344444444 44443332200          


Q ss_pred             ------hccCCCCcEEEecCccccccCh
Q psy8031          82 ------FRDCKKLVKLELQRNKLKYLPE  103 (127)
Q Consensus        82 ------~~~~~~l~~l~l~~n~~~~~~~  103 (127)
                            ....++|+.|++++|.++.+|.
T Consensus       292 N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~  319 (788)
T PRK15387        292 NQLTSLPVLPPGLQELSVSDNQLASLPA  319 (788)
T ss_pred             CccccccccccccceeECCCCccccCCC
Confidence                  0012456677777776665543

>KOG0618|consensus

Probab=98.90  E-value=2.6e-10  Score=81.65  Aligned_cols=114  Identities=20%  Similarity=0.277  Sum_probs=94.4

Q ss_pred             CCchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecch
Q psy8031           1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST   80 (127)
Q Consensus         1 ~i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~   80 (127)
                      ++|+..++++..|++|++|||.+.  .+|... ..|..|++|+..+|++..+|.  +..+++++.+|++ .|.++.+.-.
T Consensus       397 ~fpas~~~kle~LeeL~LSGNkL~--~Lp~tv-a~~~~L~tL~ahsN~l~~fPe--~~~l~qL~~lDlS-~N~L~~~~l~  470 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSGNKLT--TLPDTV-ANLGRLHTLRAHSNQLLSFPE--LAQLPQLKVLDLS-CNNLSEVTLP  470 (1081)
T ss_pred             cCCHHHHhchHHhHHHhcccchhh--hhhHHH-HhhhhhHHHhhcCCceeechh--hhhcCcceEEecc-cchhhhhhhh
Confidence            478999999999999999999976  999766 889999999999999999884  6678999999999 9999865332


Q ss_pred             hhccCCCCcEEEecCccccccChhhhcCCccccEEeccCC
Q psy8031          81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN  120 (127)
Q Consensus        81 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n  120 (127)
                      .-...++|+.++++||....+....|..+.+++.+++.-|
T Consensus       471 ~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  471 EALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            1122378999999999877777777777777777776555

>KOG1259|consensus

Probab=98.87  E-value=3.7e-10  Score=72.50  Aligned_cols=108  Identities=23%  Similarity=0.274  Sum_probs=54.9

Q ss_pred             ceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh-----------
Q psy8031          13 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL-----------   81 (127)
Q Consensus        13 l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~-----------   81 (127)
                      |+++|+++|.++  .++.+. .-.|.++.++++.|.+..+..  +..+++|+.++++ +|.+..+..+.           
T Consensus       286 LtelDLS~N~I~--~iDESv-KL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS-~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  286 LTELDLSGNLIT--QIDESV-KLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLS-GNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhccccccchh--hhhhhh-hhccceeEEeccccceeeehh--hhhcccceEeecc-cchhHhhhhhHhhhcCEeeeeh
Confidence            445555555544  444443 445555555555555555543  2334555555555 55444333221           


Q ss_pred             ----------hccCCCCcEEEecCccccccCh-hhhcCCccccEEeccCCcccccC
Q psy8031          82 ----------FRDCKKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        82 ----------~~~~~~l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                                ..-+.+|..+++++|.+..+.+ .-++.++.|.++.+.+|+++.++
T Consensus       360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence                      1223445555566665554433 11245566666666777666554

>KOG0532|consensus

Probab=98.85  E-value=7.1e-10  Score=76.07  Aligned_cols=89  Identities=25%  Similarity=0.435  Sum_probs=60.5

Q ss_pred             CccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031          10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV   89 (127)
Q Consensus        10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~   89 (127)
                      ...|..++.+.|++.  .+|+.+ +++.+++.+.+..|.+..+|... ..+ .|..+|++ +|++..+|-. |..+..|+
T Consensus       165 ~~tl~~ld~s~nei~--slpsql-~~l~slr~l~vrRn~l~~lp~El-~~L-pLi~lDfS-cNkis~iPv~-fr~m~~Lq  237 (722)
T KOG0532|consen  165 LPTLAHLDVSKNEIQ--SLPSQL-GYLTSLRDLNVRRNHLEDLPEEL-CSL-PLIRLDFS-CNKISYLPVD-FRKMRHLQ  237 (722)
T ss_pred             chhHHHhhhhhhhhh--hchHHh-hhHHHHHHHHHhhhhhhhCCHHH-hCC-ceeeeecc-cCceeecchh-hhhhhhhe
Confidence            344444444555443  444443 44555555555666666666553 333 47789999 9999999877 78899999


Q ss_pred             EEEecCccccccChhh
Q psy8031          90 KLELQRNKLKYLPENL  105 (127)
Q Consensus        90 ~l~l~~n~~~~~~~~~  105 (127)
                      .+-|.+|.++.=|..+
T Consensus       238 ~l~LenNPLqSPPAqI  253 (722)
T KOG0532|consen  238 VLQLENNPLQSPPAQI  253 (722)
T ss_pred             eeeeccCCCCCChHHH
Confidence            9999999999777765

>KOG1259|consensus

Probab=98.84  E-value=4.7e-10  Score=72.05  Aligned_cols=91  Identities=19%  Similarity=0.185  Sum_probs=61.7

Q ss_pred             cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccCh---------------------hhhcCCCCCcEE
Q psy8031           8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS---------------------DLFWNSTNITNI   66 (127)
Q Consensus         8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~---------------------~~~~~~~~l~~l   66 (127)
                      .-.+.++.|++++|.+.  .+..  +..+++|+.+|+++|.++++..                     +.+..+.+|..+
T Consensus       304 KL~Pkir~L~lS~N~i~--~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnL  379 (490)
T KOG1259|consen  304 KLAPKLRRLILSQNRIR--TVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNL  379 (490)
T ss_pred             hhccceeEEecccccee--eehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheec
Confidence            34567777888888764  4544  3567777777877776554321                     012335677788


Q ss_pred             EecCCCCCeeecc-hhhccCCCCcEEEecCccccccCh
Q psy8031          67 VLTGHKKLTSLPS-TLFRDCKKLVKLELQRNKLKYLPE  103 (127)
Q Consensus        67 ~l~~~n~~~~~~~-~~~~~~~~l~~l~l~~n~~~~~~~  103 (127)
                      ++. +|+++.+.. ...+.++.|+++.+.+|.+..+++
T Consensus       380 Dl~-~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  380 DLS-SNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             ccc-ccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            888 888886533 223568899999999999887665

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.79  E-value=1.3e-08  Score=73.19  Aligned_cols=100  Identities=28%  Similarity=0.403  Sum_probs=68.0

Q ss_pred             cceEEEecCCcCcccccCccccCC-----------------CCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCC
Q psy8031          12 YLQVIKISYHKDSLKELPSGLFAN-----------------LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL   74 (127)
Q Consensus        12 ~l~~l~l~~~~~~~~~~~~~~~~~-----------------~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~   74 (127)
                      +|+.|++++|++.  .+|... ..                 ...|+.|++++|+++.+|..    .++++.|+++ +|.+
T Consensus       343 ~Lq~LdLS~N~Ls--~LP~lp-~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l----~s~L~~LdLS-~N~L  414 (788)
T PRK15387        343 GLQELSVSDNQLA--SLPTLP-SELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL----PSELKELMVS-GNRL  414 (788)
T ss_pred             ccceEecCCCccC--CCCCCC-cccceehhhccccccCcccccccceEEecCCcccCCCCc----ccCCCEEEcc-CCcC
Confidence            6778888888765  555311 11                 12456666666666655532    2456777777 7777


Q ss_pred             eeecchhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031          75 TSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        75 ~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      ..+|..    ...+..+++++|.++.+|.. +..+++|..+++++|+++.
T Consensus       415 ssIP~l----~~~L~~L~Ls~NqLt~LP~s-l~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        415 TSLPML----PSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             CCCCcc----hhhhhhhhhccCcccccChH-HhhccCCCeEECCCCCCCc
Confidence            766542    23567788888888888887 4788899999999998874

>PLN03210 Resistant to P

Probab=98.75  E-value=7.2e-08  Score=72.62  Aligned_cols=107  Identities=24%  Similarity=0.425  Sum_probs=64.9

Q ss_pred             CccceEEEecCCcCcccccCccccCCCCCCcEEEecCC-cccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCC
Q psy8031          10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES-SIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL   88 (127)
Q Consensus        10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l   88 (127)
                      .++|+.|++++|.. +..+|.. ++.+++|+.|++++| .+..+|...  .+++|+.+++++.+.+..++..    ..++
T Consensus       777 ~~sL~~L~Ls~n~~-l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~----~~nL  848 (1153)
T PLN03210        777 SPSLTRLFLSDIPS-LVELPSS-IQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFPDI----STNI  848 (1153)
T ss_pred             cccchheeCCCCCC-ccccChh-hhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCcccccccc----cccc
Confidence            45677778877753 3456655 477888888888765 466666542  4566777777622344444321    2456


Q ss_pred             cEEEecCccccccChhhhcCCccccEEeccC-Cccccc
Q psy8031          89 VKLELQRNKLKYLPENLFESLKELYTLNLKN-NQLENI  125 (127)
Q Consensus        89 ~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~-n~i~~~  125 (127)
                      +.+++++|.+..+|..+ ..+++|+.+++++ +.+..+
T Consensus       849 ~~L~Ls~n~i~~iP~si-~~l~~L~~L~L~~C~~L~~l  885 (1153)
T PLN03210        849 SDLNLSRTGIEEVPWWI-EKFSNLSFLDMNGCNNLQRV  885 (1153)
T ss_pred             CEeECCCCCCccChHHH-hcCCCCCEEECCCCCCcCcc
Confidence            66777777776666653 5666666666665 344443

syringae 6; Provisional

>PLN03150 hypothetical protein; Provisional

Probab=98.71  E-value=6.2e-08  Score=68.77  Aligned_cols=83  Identities=19%  Similarity=0.275  Sum_probs=69.2

Q ss_pred             CcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCcccc-ccChhhhcCCccccEEec
Q psy8031          39 LNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK-YLPENLFESLKELYTLNL  117 (127)
Q Consensus        39 l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~~~~~l~~l~l  117 (127)
                      +..|++++|.+....+..+..+++|+.|+++ .|.+....+..+..+++|+.|++++|.+. .+|+. ++.+++|+.|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls-~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L  497 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLS-GNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL  497 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECC-CCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence            6788999999985444458889999999999 99987443434688999999999999987 56666 589999999999


Q ss_pred             cCCccc
Q psy8031         118 KNNQLE  123 (127)
Q Consensus       118 ~~n~i~  123 (127)
                      ++|.++
T Consensus       498 s~N~l~  503 (623)
T PLN03150        498 NGNSLS  503 (623)
T ss_pred             cCCccc
Confidence            999887

>PLN03210 Resistant to P

Probab=98.71  E-value=1.8e-07  Score=70.57  Aligned_cols=86  Identities=23%  Similarity=0.296  Sum_probs=45.3

Q ss_pred             CCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCC-CCeeecchhhccCCCCcEEEecCc-cccccChhhhcCCcccc
Q psy8031          36 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHK-KLTSLPSTLFRDCKKLVKLELQRN-KLKYLPENLFESLKELY  113 (127)
Q Consensus        36 ~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n-~~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~~~~~~~~l~  113 (127)
                      ..+|..|++.++++..++.. +..+++|+.++++ .+ .+..+|.  +..+++|+.+++.++ .+..+|.. ++.+++|+
T Consensus       610 ~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls-~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~  684 (1153)
T PLN03210        610 PENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLR-GSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSS-IQYLNKLE  684 (1153)
T ss_pred             ccCCcEEECcCccccccccc-cccCCCCCEEECC-CCCCcCcCCc--cccCCcccEEEecCCCCccccchh-hhccCCCC
Confidence            34555556655555555443 3445566666665 43 3444443  344556666666654 34555554 35566666


Q ss_pred             EEeccCC-cccccC
Q psy8031         114 TLNLKNN-QLENIT  126 (127)
Q Consensus       114 ~l~l~~n-~i~~~~  126 (127)
                      .|++++| .+..+|
T Consensus       685 ~L~L~~c~~L~~Lp  698 (1153)
T PLN03210        685 DLDMSRCENLEILP  698 (1153)
T ss_pred             EEeCCCCCCcCccC
Confidence            6666553 344433

syringae 6; Provisional

>KOG4579|consensus

Probab=98.71  E-value=1e-09  Score=62.91  Aligned_cols=107  Identities=17%  Similarity=0.246  Sum_probs=60.7

Q ss_pred             EEEecCCcCcccccCccc--cCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEE
Q psy8031          15 VIKISYHKDSLKELPSGL--FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE   92 (127)
Q Consensus        15 ~l~l~~~~~~~~~~~~~~--~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~   92 (127)
                      .++++.|++-  .+++-.  ......++.+++++|.+.++|+..-..++.++.+++. +|.+..+|.+ +..++.|+.++
T Consensus        31 ~ldLssc~lm--~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~-~neisdvPeE-~Aam~aLr~lN  106 (177)
T KOG4579|consen   31 FLDLSSCQLM--YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLA-NNEISDVPEE-LAAMPALRSLN  106 (177)
T ss_pred             hcccccchhh--HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcc-hhhhhhchHH-HhhhHHhhhcc
Confidence            3555666532  333211  1334445556666776666666532334566666666 6666666666 45566666677


Q ss_pred             ecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          93 LQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        93 l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      ++.|.+...|.-++ .+.++..|+..+|.+..+|
T Consensus       107 l~~N~l~~~p~vi~-~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIA-PLIKLDMLDSPENARAEID  139 (177)
T ss_pred             cccCccccchHHHH-HHHhHHHhcCCCCccccCc
Confidence            77666666655543 3566666666666555443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.66  E-value=3.7e-08  Score=64.24  Aligned_cols=38  Identities=37%  Similarity=0.383  Sum_probs=19.7

Q ss_pred             CCCcEEEecCccccccCh----hhhcCCccccEEeccCCccc
Q psy8031          86 KKLVKLELQRNKLKYLPE----NLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        86 ~~l~~l~l~~n~~~~~~~----~~~~~~~~l~~l~l~~n~i~  123 (127)
                      ++|+.+++++|.+.....    ..+..+++|+.+++++|.++
T Consensus       193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            456666666655542211    11234556666666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1644|consensus

Probab=98.65  E-value=1.2e-07  Score=57.65  Aligned_cols=107  Identities=19%  Similarity=0.222  Sum_probs=67.6

Q ss_pred             cceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEE
Q psy8031          12 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL   91 (127)
Q Consensus        12 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l   91 (127)
                      .-+++++.+.++.  .+.. .-....+...+|+++|.+-.++.  |..++.|.+|.+. +|++..+.+..-..++++..|
T Consensus        20 ~e~e~~LR~lkip--~ien-lg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~-nNrIt~I~p~L~~~~p~l~~L   93 (233)
T KOG1644|consen   20 RERELDLRGLKIP--VIEN-LGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLN-NNRITRIDPDLDTFLPNLKTL   93 (233)
T ss_pred             ccccccccccccc--chhh-ccccccccceecccccchhhccc--CCCccccceEEec-CCcceeeccchhhhccccceE
Confidence            3455666666654  3332 22334566777777777766553  5667777788887 778877766544445667777


Q ss_pred             EecCccccccCh-hhhcCCccccEEeccCCcccc
Q psy8031          92 ELQRNKLKYLPE-NLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        92 ~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      .+.+|.+..+.+ .-...|++|+.|.+-+|+++.
T Consensus        94 ~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~  127 (233)
T KOG1644|consen   94 ILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH  127 (233)
T ss_pred             EecCcchhhhhhcchhccCCccceeeecCCchhc
Confidence            787777765432 112456777777777777654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.64  E-value=3.9e-08  Score=45.70  Aligned_cols=39  Identities=38%  Similarity=0.632  Sum_probs=21.7

Q ss_pred             CCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        87 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      +|+.+++++|.+++++.. ++.+++|+.+++++|++++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCCCc
Confidence            455666666666666553 356666666666666665543

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.57  E-value=1.5e-07  Score=43.76  Aligned_cols=39  Identities=28%  Similarity=0.540  Sum_probs=23.3

Q ss_pred             cceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccC
Q psy8031          12 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP   53 (127)
Q Consensus        12 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~   53 (127)
                      +|+.|++++|++.  ++|+. ++.+++|+.+++++|+++.++
T Consensus         2 ~L~~L~l~~N~i~--~l~~~-l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQIT--DLPPE-LSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-S--SHGGH-GTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCc--ccCch-HhCCCCCCEEEecCCCCCCCc
Confidence            4666666766655  66653 366666666666666666554

...

>KOG1644|consensus

Probab=98.52  E-value=2.4e-07  Score=56.41  Aligned_cols=104  Identities=23%  Similarity=0.362  Sum_probs=76.9

Q ss_pred             ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecc-hhhccCCCCc
Q psy8031          11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TLFRDCKKLV   89 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~-~~~~~~~~l~   89 (127)
                      .+...+|+++|++-  .++.  |..++.|++|.+.+|.++.|.+..-.-++.+..|.+. +|.++.+.. .-...|++|+
T Consensus        42 d~~d~iDLtdNdl~--~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt-nNsi~~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR--KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT-NNSIQELGDLDPLASCPKLE  116 (233)
T ss_pred             cccceecccccchh--hccc--CCCccccceEEecCCcceeeccchhhhccccceEEec-CcchhhhhhcchhccCCccc
Confidence            35667889999864  4443  5789999999999999999987754456889999999 998887654 2234678999


Q ss_pred             EEEecCccccccCh---hhhcCCccccEEeccC
Q psy8031          90 KLELQRNKLKYLPE---NLFESLKELYTLNLKN  119 (127)
Q Consensus        90 ~l~l~~n~~~~~~~---~~~~~~~~l~~l~l~~  119 (127)
                      .+.+-+|.+++...   .+...+++++.||+++
T Consensus       117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            99999998775432   2233457788888754

>KOG4579|consensus

Probab=98.51  E-value=1.3e-08  Score=58.42  Aligned_cols=92  Identities=20%  Similarity=0.260  Sum_probs=78.5

Q ss_pred             CccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031          10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV   89 (127)
Q Consensus        10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~   89 (127)
                      ...|..+++++|++.  ++|+.+-...+.++.+++++|++.++|.. +..++.|+.++++ .|.+...+.-.+. +.++.
T Consensus        52 ~~el~~i~ls~N~fk--~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~-~N~l~~~p~vi~~-L~~l~  126 (177)
T KOG4579|consen   52 GYELTKISLSDNGFK--KFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLR-FNPLNAEPRVIAP-LIKLD  126 (177)
T ss_pred             CceEEEEecccchhh--hCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccc-cCccccchHHHHH-HHhHH
Confidence            344666799999976  89988767788899999999999999988 7889999999999 9999988876554 78888


Q ss_pred             EEEecCccccccChhhh
Q psy8031          90 KLELQRNKLKYLPENLF  106 (127)
Q Consensus        90 ~l~l~~n~~~~~~~~~~  106 (127)
                      .++..+|.+..++-+.|
T Consensus       127 ~Lds~~na~~eid~dl~  143 (177)
T KOG4579|consen  127 MLDSPENARAEIDVDLF  143 (177)
T ss_pred             HhcCCCCccccCcHHHh
Confidence            89999999988887754

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.44  E-value=1.2e-07  Score=63.89  Aligned_cols=44  Identities=32%  Similarity=0.521  Sum_probs=24.6

Q ss_pred             cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccCh
Q psy8031           8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS   54 (127)
Q Consensus         8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~   54 (127)
                      +.++.|+.|++++|++.  +++... ...+.++.+++++|++..++.
T Consensus       160 ~~l~~L~~L~l~~N~l~--~l~~~~-~~~~~L~~L~ls~N~i~~l~~  203 (394)
T COG4886         160 RNLPNLKNLDLSFNDLS--DLPKLL-SNLSNLNNLDLSGNKISDLPP  203 (394)
T ss_pred             hccccccccccCCchhh--hhhhhh-hhhhhhhheeccCCccccCch
Confidence            44555666666666554  555432 245556666666666665554

>KOG1859|consensus

Probab=98.43  E-value=5.1e-09  Score=74.05  Aligned_cols=100  Identities=26%  Similarity=0.383  Sum_probs=54.2

Q ss_pred             EEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecC
Q psy8031          16 IKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR   95 (127)
Q Consensus        16 l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~   95 (127)
                      .++++|.+.  .++.. +.-++.++.|++++|+++++.  .+..++.|..||++ .|.+..+|.-...+|. |..+.+++
T Consensus       169 a~fsyN~L~--~mD~S-Lqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDls-yN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  169 ASFSYNRLV--LMDES-LQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLS-YNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             hhcchhhHH--hHHHH-HHHHHHhhhhccchhhhhhhH--HHHhcccccccccc-cchhccccccchhhhh-heeeeecc
Confidence            344555432  33322 244556666666666666554  23445666666666 6666666553323333 66666666


Q ss_pred             ccccccChhhhcCCccccEEeccCCcccc
Q psy8031          96 NKLKYLPENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        96 n~~~~~~~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      |.++.+...  .++.+|..||+++|.+..
T Consensus       242 N~l~tL~gi--e~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  242 NALTTLRGI--ENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             cHHHhhhhH--HhhhhhhccchhHhhhhc
Confidence            666655442  455666666666665443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.38  E-value=2.3e-07  Score=62.48  Aligned_cols=103  Identities=30%  Similarity=0.469  Sum_probs=53.2

Q ss_pred             ccceEEEecCCcCcccccCccccCCCC-CCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031          11 KYLQVIKISYHKDSLKELPSGLFANLP-LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV   89 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~-~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~   89 (127)
                      +.+..+++.++.+.  ++++.. .... .++.+++++|++..++.. ...++.|+.|+++ .|.+..++... ...+.+.
T Consensus       116 ~~l~~L~l~~n~i~--~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~-~N~l~~l~~~~-~~~~~L~  189 (394)
T COG4886         116 TNLTSLDLDNNNIT--DIPPLI-GLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLS-FNDLSDLPKLL-SNLSNLN  189 (394)
T ss_pred             cceeEEecCCcccc--cCcccc-ccchhhcccccccccchhhhhhh-hhccccccccccC-Cchhhhhhhhh-hhhhhhh
Confidence            34555555555544  555543 2232 566666666665555321 2345556666666 66665555532 1345555


Q ss_pred             EEEecCccccccChhhhcCCccccEEeccCC
Q psy8031          90 KLELQRNKLKYLPENLFESLKELYTLNLKNN  120 (127)
Q Consensus        90 ~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n  120 (127)
                      .+++++|.+..+|... .....|..+.+++|
T Consensus       190 ~L~ls~N~i~~l~~~~-~~~~~L~~l~~~~N  219 (394)
T COG4886         190 NLDLSGNKISDLPPEI-ELLSALEELDLSNN  219 (394)
T ss_pred             heeccCCccccCchhh-hhhhhhhhhhhcCC
Confidence            5666666666555542 23334555555555

>KOG1859|consensus

Probab=98.38  E-value=6.4e-09  Score=73.55  Aligned_cols=110  Identities=24%  Similarity=0.263  Sum_probs=84.3

Q ss_pred             hhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccC
Q psy8031           6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC   85 (127)
Q Consensus         6 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~   85 (127)
                      .+.-++.++.|++++|++.  +..  .+..++.|+.||++.|.+..+|.-...++. |+.|.+. +|.++.+..  ...+
T Consensus       182 SLqll~ale~LnLshNk~~--~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr-nN~l~tL~g--ie~L  253 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFT--KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR-NNALTTLRG--IENL  253 (1096)
T ss_pred             HHHHHHHhhhhccchhhhh--hhH--HHHhcccccccccccchhccccccchhhhh-heeeeec-ccHHHhhhh--HHhh
Confidence            3455778999999999976  555  457899999999999999988764333444 9999999 999888865  2457


Q ss_pred             CCCcEEEecCccccccCh-hhhcCCccccEEeccCCccc
Q psy8031          86 KKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        86 ~~l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~i~  123 (127)
                      .+|+.|+++.|.+....+ .....+..|+.|.+.+|++.
T Consensus       254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            889999999998875533 11234567888999999875

>KOG0531|consensus

Probab=98.38  E-value=1.4e-07  Score=64.04  Aligned_cols=110  Identities=19%  Similarity=0.282  Sum_probs=63.2

Q ss_pred             cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCC
Q psy8031           8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKK   87 (127)
Q Consensus         8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~   87 (127)
                      ..+.+++.+++.+|.+.  .+... ...+++|+++++++|.++.+..  +..++.|+.|.+. +|.+..+..  +..+..
T Consensus        92 ~~~~~l~~l~l~~n~i~--~i~~~-l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~-~N~i~~~~~--~~~l~~  163 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIE--KIENL-LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLS-GNLISDISG--LESLKS  163 (414)
T ss_pred             ccccceeeeeccccchh--hcccc-hhhhhcchheeccccccccccc--hhhccchhhheec-cCcchhccC--Cccchh
Confidence            34556666666666654  44442 2456666777777776666654  2334556666666 666666654  333566


Q ss_pred             CcEEEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031          88 LVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI  125 (127)
Q Consensus        88 l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~  125 (127)
                      ++.+++++|.+..+.......+.++..+.+.+|.+..+
T Consensus       164 L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  164 LKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI  201 (414)
T ss_pred             hhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence            66666666666666551013455566666666655443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.37  E-value=8.6e-07  Score=57.86  Aligned_cols=114  Identities=20%  Similarity=0.244  Sum_probs=69.9

Q ss_pred             hhcCCccceEEEecCCcCcccccCccccCCCCC---CcEEEecCCcccccC----hhhhcCC-CCCcEEEecCCCCCeee
Q psy8031           6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPL---LNTVILGESSIAELP----SDLFWNS-TNITNIVLTGHKKLTSL   77 (127)
Q Consensus         6 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~---l~~l~l~~n~~~~~~----~~~~~~~-~~l~~l~l~~~n~~~~~   77 (127)
                      .|..+++|+.|++++|.+.  ......+..+..   ++.+++++|.++...    ...+..+ ++++.++++ .+.++.-
T Consensus        76 ~l~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~-~n~l~~~  152 (319)
T cd00116          76 GLTKGCGLQELDLSDNALG--PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG-RNRLEGA  152 (319)
T ss_pred             HHHhcCceeEEEccCCCCC--hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcC-CCcCCch
Confidence            4556778888888888764  333333333443   888888888776311    1123344 678888888 7776621


Q ss_pred             c----chhhccCCCCcEEEecCccccc-----cChhhhcCCccccEEeccCCccc
Q psy8031          78 P----STLFRDCKKLVKLELQRNKLKY-----LPENLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        78 ~----~~~~~~~~~l~~l~l~~n~~~~-----~~~~~~~~~~~l~~l~l~~n~i~  123 (127)
                      .    ...+..+..++.+++++|.++.     +... +...+.|+.+++++|.++
T Consensus       153 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         153 SCEALAKALRANRDLKELNLANNGIGDAGIRALAEG-LKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH-HHhCCCCCEEeccCCccC
Confidence            1    1234455678888888887762     2222 234467888888888765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658|consensus

Probab=98.34  E-value=4.1e-07  Score=66.75  Aligned_cols=89  Identities=25%  Similarity=0.357  Sum_probs=41.6

Q ss_pred             chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031           3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF   82 (127)
Q Consensus         3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~   82 (127)
                      +.+.|..++.|+.||+++|. .+.++|..+ +.+-+|++|++++..+..+|.+ +..+..|.+|++. .+......+...
T Consensus       563 s~~ff~~m~~LrVLDLs~~~-~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~-l~~Lk~L~~Lnl~-~~~~l~~~~~i~  638 (889)
T KOG4658|consen  563 SGEFFRSLPLLRVLDLSGNS-SLSKLPSSI-GELVHLRYLDLSDTGISHLPSG-LGNLKKLIYLNLE-VTGRLESIPGIL  638 (889)
T ss_pred             CHHHHhhCcceEEEECCCCC-ccCcCChHH-hhhhhhhcccccCCCccccchH-HHHHHhhheeccc-cccccccccchh
Confidence            33445555555555555543 233455444 4455555555555555555544 3444455555555 433222223333


Q ss_pred             ccCCCCcEEEecC
Q psy8031          83 RDCKKLVKLELQR   95 (127)
Q Consensus        83 ~~~~~l~~l~l~~   95 (127)
                      ..+++|+.+.+..
T Consensus       639 ~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  639 LELQSLRVLRLPR  651 (889)
T ss_pred             hhcccccEEEeec
Confidence            3345555555443

>KOG0531|consensus

Probab=98.29  E-value=1.9e-07  Score=63.39  Aligned_cols=108  Identities=21%  Similarity=0.269  Sum_probs=84.2

Q ss_pred             CccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031          10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV   89 (127)
Q Consensus        10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~   89 (127)
                      +..++.+.+..|.+.  .+... ...+.++..+++.+|++..+... ...+++|+.++++ .|.+..+.+-  ..+..|.
T Consensus        71 l~~l~~l~l~~n~i~--~~~~~-l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls-~N~I~~i~~l--~~l~~L~  143 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIA--KILNH-LSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLS-FNKITKLEGL--STLTLLK  143 (414)
T ss_pred             hHhHHhhccchhhhh--hhhcc-cccccceeeeeccccchhhcccc-hhhhhcchheecc-ccccccccch--hhccchh
Confidence            455666667777654  42322 36788999999999999988763 3568899999999 9999988763  4466799


Q ss_pred             EEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          90 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        90 ~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      .|++.+|.++.+...  ..+..|..+++++|.+..+.
T Consensus       144 ~L~l~~N~i~~~~~~--~~l~~L~~l~l~~n~i~~ie  178 (414)
T KOG0531|consen  144 ELNLSGNLISDISGL--ESLKSLKLLDLSYNRIVDIE  178 (414)
T ss_pred             hheeccCcchhccCC--ccchhhhcccCCcchhhhhh
Confidence            999999999988663  56889999999999887654

>KOG4658|consensus

Probab=98.16  E-value=2.1e-06  Score=63.17  Aligned_cols=107  Identities=26%  Similarity=0.363  Sum_probs=66.1

Q ss_pred             CccceEEEecCCcCcccccCccccCCCCCCcEEEecCC-cccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCC
Q psy8031          10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES-SIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL   88 (127)
Q Consensus        10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l   88 (127)
                      ++.|+.|.+.+|.-.+..++..+|..++.|.+||+++| .+.++|.. .+.+.+|++|+++ ...+..+|... ..+..|
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~-~t~I~~LP~~l-~~Lk~L  620 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLS-DTGISHLPSGL-GNLKKL  620 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-Hhhhhhhhccccc-CCCccccchHH-HHHHhh
Confidence            34566777776641012566666777777777777754 45566655 3556777777777 77777777663 566677


Q ss_pred             cEEEecCccccccChhhhcCCccccEEeccC
Q psy8031          89 VKLELQRNKLKYLPENLFESLKELYTLNLKN  119 (127)
Q Consensus        89 ~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~  119 (127)
                      .+|++..+.-......+...+.+|+.+.+..
T Consensus       621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  621 IYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             heeccccccccccccchhhhcccccEEEeec
Confidence            7777776643322233335566777666644

>KOG3207|consensus

Probab=98.14  E-value=4e-07  Score=61.08  Aligned_cols=114  Identities=15%  Similarity=0.182  Sum_probs=58.3

Q ss_pred             ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecc-hhhccCCCCc
Q psy8031          11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TLFRDCKKLV   89 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~-~~~~~~~~l~   89 (127)
                      ++++.|.+++|+++-.++. .....+|++..|+++.|..-.+.......+.+|+.|+++ +|.+-..+. .....++.|.
T Consensus       197 ~~lK~L~l~~CGls~k~V~-~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs-~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQ-WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS-NNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhheEEeccCCCCHHHHH-HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc-CCcccccccccccccccchh
Confidence            3444444455544311111 122345666666666653111111112335667777777 666555442 1123466777


Q ss_pred             EEEecCccccccCh--h----hhcCCccccEEeccCCcccccC
Q psy8031          90 KLELQRNKLKYLPE--N----LFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        90 ~l~l~~n~~~~~~~--~----~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      .++++.+.+.++..  .    .....++|+.|++..|+|+.++
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~  317 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR  317 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence            77777777764422  1    0112367888888888876554

>KOG1909|consensus

Probab=98.10  E-value=3.3e-06  Score=55.32  Aligned_cols=117  Identities=15%  Similarity=0.181  Sum_probs=65.4

Q ss_pred             hhcCCccceEEEecCCcCcccccC--ccccCCCCCCcEEEecCCcccccChhh-------------hcCCCCCcEEEecC
Q psy8031           6 LFAEMKYLQVIKISYHKDSLKELP--SGLFANLPLLNTVILGESSIAELPSDL-------------FWNSTNITNIVLTG   70 (127)
Q Consensus         6 ~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~~~~~l~~l~l~~n~~~~~~~~~-------------~~~~~~l~~l~l~~   70 (127)
                      ++..+++|+.+++|.|.+....++  ..++..+..|+.|++.+|.+.......             ...-+.|+.+... 
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~-  165 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG-  165 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee-
Confidence            445677888888888877522222  113345677788888777766432221             1234567777776 


Q ss_pred             CCCCeeecc----hhhccCCCCcEEEecCccccc----cChhhhcCCccccEEeccCCccc
Q psy8031          71 HKKLTSLPS----TLFRDCKKLVKLELQRNKLKY----LPENLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        71 ~n~~~~~~~----~~~~~~~~l~~l~l~~n~~~~----~~~~~~~~~~~l~~l~l~~n~i~  123 (127)
                      +|++..-+.    ..|+.++.+..+.++.|.+..    +-...|..++.|+.|+++.|.++
T Consensus       166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            676653332    234445556666666665531    11122455666666666666543

>KOG3207|consensus

Probab=98.07  E-value=9.5e-07  Score=59.37  Aligned_cols=89  Identities=18%  Similarity=0.241  Sum_probs=41.4

Q ss_pred             CCCCcEEEecCCcccccC-hhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCccccccCh-hhhcCCcccc
Q psy8031          36 LPLLNTVILGESSIAELP-SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE-NLFESLKELY  113 (127)
Q Consensus        36 ~~~l~~l~l~~n~~~~~~-~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~-~~~~~~~~l~  113 (127)
                      +++++.|.++.|.++.-. ......+|+++.|.+. .|....+....+.-++.|+.|++++|.+-+++. ...+.++.|.
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~-~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLE-ANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhh-cccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence            444555555555554211 1112334555555555 442111111111223456666666666554442 1124556666


Q ss_pred             EEeccCCccccc
Q psy8031         114 TLNLKNNQLENI  125 (127)
Q Consensus       114 ~l~l~~n~i~~~  125 (127)
                      .+.++.+.+.++
T Consensus       275 ~Lnls~tgi~si  286 (505)
T KOG3207|consen  275 QLNLSSTGIASI  286 (505)
T ss_pred             hhhccccCcchh
Confidence            666666666553

>KOG1909|consensus

Probab=97.89  E-value=7.4e-06  Score=53.74  Aligned_cols=116  Identities=18%  Similarity=0.221  Sum_probs=79.0

Q ss_pred             hhhcCCccceEEEecCCcCccccc--CccccCCCCCCcEEEecCCcccccC----hhhhcCCCCCcEEEecCCCCCeeec
Q psy8031           5 DLFAEMKYLQVIKISYHKDSLKEL--PSGLFANLPLLNTVILGESSIAELP----SDLFWNSTNITNIVLTGHKKLTSLP   78 (127)
Q Consensus         5 ~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~~~~~l~~l~l~~n~~~~~~----~~~~~~~~~l~~l~l~~~n~~~~~~   78 (127)
                      .+|+.++.|+.+.+++|.+....+  -...|..++.|+.|++.+|.++...    ..+++.+++|+.+.++ ++.+..-+
T Consensus       179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~-dcll~~~G  257 (382)
T KOG1909|consen  179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG-DCLLENEG  257 (382)
T ss_pred             HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc-cccccccc
Confidence            456777788888888888742222  2334677899999999999888432    2356777888899888 77766433


Q ss_pred             chhh-----ccCCCCcEEEecCccccc-----cChhhhcCCccccEEeccCCcc
Q psy8031          79 STLF-----RDCKKLVKLELQRNKLKY-----LPENLFESLKELYTLNLKNNQL  122 (127)
Q Consensus        79 ~~~~-----~~~~~l~~l~l~~n~~~~-----~~~~~~~~~~~l~~l~l~~n~i  122 (127)
                      ...|     ...++|..+.+.+|.++.     +... ....+.|..|.+++|.+
T Consensus       258 a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~-~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  258 AIAFVDALKESAPSLEVLELAGNEITRDAALALAAC-MAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH-HhcchhhHHhcCCcccc
Confidence            2211     246788889999988762     1112 23457888899999887

>KOG3665|consensus

Probab=97.66  E-value=6.6e-05  Score=54.27  Aligned_cols=110  Identities=22%  Similarity=0.238  Sum_probs=58.2

Q ss_pred             CCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecc--hhhccCC
Q psy8031           9 EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS--TLFRDCK   86 (127)
Q Consensus         9 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~--~~~~~~~   86 (127)
                      -+|.|+.|.+.+-.+.-.+ -......+++|..||+++.+++.+.  ..+.+++|+.|.+. +=.+.....  ..| .++
T Consensus       146 ~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl~--GIS~LknLq~L~mr-nLe~e~~~~l~~LF-~L~  220 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNLS--GISRLKNLQVLSMR-NLEFESYQDLIDLF-NLK  220 (699)
T ss_pred             hCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCcH--HHhccccHHHHhcc-CCCCCchhhHHHHh-ccc
Confidence            3566666666665442111 1123345666677777766666552  23455666666655 433332211  223 367


Q ss_pred             CCcEEEecCccccccCh------hhhcCCccccEEeccCCccc
Q psy8031          87 KLVKLELQRNKLKYLPE------NLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        87 ~l~~l~l~~n~~~~~~~------~~~~~~~~l~~l~l~~n~i~  123 (127)
                      +|+.|+++......-+.      .....++.|+.||.+++.+.
T Consensus       221 ~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  221 KLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             CCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            77777777654332221      11234577778887776554

>KOG3665|consensus

Probab=97.60  E-value=4e-05  Score=55.35  Aligned_cols=108  Identities=18%  Similarity=0.237  Sum_probs=77.3

Q ss_pred             ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccC-hhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031          11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP-SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV   89 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~-~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~   89 (127)
                      .+|+.|+++|.+.-....+......+|+|+.|.+.+-.+..-. .....++++|..||++ +.++..+..  .+.+.+|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS-~TnI~nl~G--IS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDIS-GTNISNLSG--ISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecC-CCCccCcHH--HhccccHH
Confidence            4588899999775334455555567999999999987765322 2335678999999999 988888732  35678888


Q ss_pred             EEEecCccccccCh-hhhcCCccccEEeccCCc
Q psy8031          90 KLELQRNKLKYLPE-NLFESLKELYTLNLKNNQ  121 (127)
Q Consensus        90 ~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~  121 (127)
                      .|.+++=.+..... ....++++|+.||+|...
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            88877666553221 122478999999998764

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.33  E-value=0.0018  Score=44.27  Aligned_cols=60  Identities=18%  Similarity=0.346  Sum_probs=38.2

Q ss_pred             CCccceEEEecCCcCcccccCccccCCCCCCcEEEecC-CcccccChhhhcCCCCCcEEEecCCC-CCeeec
Q psy8031           9 EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGE-SSIAELPSDLFWNSTNITNIVLTGHK-KLTSLP   78 (127)
Q Consensus         9 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~~~~~l~~l~l~~~n-~~~~~~   78 (127)
                      .+..++.|++++|.+.  .+|. +   ..+++.|.+.+ +.++.+|.. +  ..+|+.|.+. .+ .+..+|
T Consensus        50 ~~~~l~~L~Is~c~L~--sLP~-L---P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls-~Cs~L~sLP  111 (426)
T PRK15386         50 EARASGRLYIKDCDIE--SLPV-L---PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVC-HCPEISGLP  111 (426)
T ss_pred             HhcCCCEEEeCCCCCc--ccCC-C---CCCCcEEEccCCCCcccCCch-h--hhhhhheEcc-Ccccccccc
Confidence            3678889999999765  7772 1   34688888876 455555543 2  2467777777 54 444443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.11  E-value=0.0023  Score=41.47  Aligned_cols=117  Identities=13%  Similarity=0.155  Sum_probs=69.4

Q ss_pred             hhcCCccceEEEecCCcCcccccC--ccccCCCCCCcEEEecCCcccccChhhh-------------cCCCCCcEEEecC
Q psy8031           6 LFAEMKYLQVIKISYHKDSLKELP--SGLFANLPLLNTVILGESSIAELPSDLF-------------WNSTNITNIVLTG   70 (127)
Q Consensus         6 ~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~~~~~l~~l~l~~n~~~~~~~~~~-------------~~~~~l~~l~l~~   70 (127)
                      ++..|++++.+++|.|.+.....+  .++.+....+..|.+.+|.+..+.....             ..-|.|+.+... 
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg-  165 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG-  165 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec-
Confidence            456799999999999988633222  1234667889999999998775543221             234678888877 


Q ss_pred             CCCCeeecch----hhccCCCCcEEEecCcccccc--Chhh---hcCCccccEEeccCCccc
Q psy8031          71 HKKLTSLPST----LFRDCKKLVKLELQRNKLKYL--PENL---FESLKELYTLNLKNNQLE  123 (127)
Q Consensus        71 ~n~~~~~~~~----~~~~~~~l~~l~l~~n~~~~~--~~~~---~~~~~~l~~l~l~~n~i~  123 (127)
                      .|++..-+..    .+.....+..+.+..|.+..-  ..-+   ...+.+|..|+++.|-++
T Consensus       166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            7877644332    122223556666666655411  0000   124456666666666544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.08  E-value=0.00035  Score=27.23  Aligned_cols=10  Identities=20%  Similarity=0.365  Sum_probs=4.2

Q ss_pred             ceEEEecCCc
Q psy8031          13 LQVIKISYHK   22 (127)
Q Consensus        13 l~~l~l~~~~   22 (127)
                      |+.|++++|+
T Consensus         2 L~~Ldls~n~   11 (22)
T PF00560_consen    2 LEYLDLSGNN   11 (22)
T ss_dssp             ESEEEETSSE
T ss_pred             ccEEECCCCc
Confidence            3444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.02  E-value=0.00042  Score=27.01  Aligned_cols=21  Identities=29%  Similarity=0.439  Sum_probs=17.6

Q ss_pred             CCcEEEecCCcccccChhhhcC
Q psy8031          38 LLNTVILGESSIAELPSDLFWN   59 (127)
Q Consensus        38 ~l~~l~l~~n~~~~~~~~~~~~   59 (127)
                      +|++|++++|+++.+|+. |+.
T Consensus         1 ~L~~Ldls~n~l~~ip~~-~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSS-FSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTT-TTT
T ss_pred             CccEEECCCCcCEeCChh-hcC
Confidence            478999999999998876 653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2982|consensus

Probab=96.98  E-value=0.00016  Score=47.07  Aligned_cols=59  Identities=19%  Similarity=0.138  Sum_probs=24.7

Q ss_pred             ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEec
Q psy8031          11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT   69 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~   69 (127)
                      +.++.+++.+|.++-++--..+..++|.++.|++++|++.......-....+++.+.+.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLN  129 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLN  129 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEc
Confidence            34445555555544222222233445555555555555443221111133445555554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.93  E-value=0.00058  Score=24.86  Aligned_cols=16  Identities=44%  Similarity=0.681  Sum_probs=7.7

Q ss_pred             cccEEeccCCcccccC
Q psy8031         111 ELYTLNLKNNQLENIT  126 (127)
Q Consensus       111 ~l~~l~l~~n~i~~~~  126 (127)
                      +|+.|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4566666666666654

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=96.72  E-value=0.0017  Score=26.23  Aligned_cols=20  Identities=25%  Similarity=0.461  Sum_probs=9.9

Q ss_pred             CCcEEEecCCcccccChhhh
Q psy8031          38 LLNTVILGESSIAELPSDLF   57 (127)
Q Consensus        38 ~l~~l~l~~n~~~~~~~~~~   57 (127)
                      +|+.+++.+|+++.+|...|
T Consensus         3 ~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        3 NLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCEEECCCCcCCcCCHHHc
Confidence            44555555555555554443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=96.72  E-value=0.0017  Score=26.23  Aligned_cols=20  Identities=25%  Similarity=0.461  Sum_probs=9.9

Q ss_pred             CCcEEEecCCcccccChhhh
Q psy8031          38 LLNTVILGESSIAELPSDLF   57 (127)
Q Consensus        38 ~l~~l~l~~n~~~~~~~~~~   57 (127)
                      +|+.+++.+|+++.+|...|
T Consensus         3 ~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        3 NLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCEEECCCCcCCcCCHHHc
Confidence            44555555555555554443

>KOG2123|consensus

Probab=96.62  E-value=9.9e-05  Score=47.63  Aligned_cols=82  Identities=17%  Similarity=0.257  Sum_probs=56.7

Q ss_pred             CccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecc-hhhccCCCC
Q psy8031          10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TLFRDCKKL   88 (127)
Q Consensus        10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~-~~~~~~~~l   88 (127)
                      +.+++.|++-||++.  +|.-  -..++.+++|.++-|+++.+.+  |..+..|.+|.|. .|.|..+.. ....++++|
T Consensus        18 l~~vkKLNcwg~~L~--DIsi--c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLR-kN~I~sldEL~YLknlpsL   90 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD--DISI--CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLR-KNCIESLDELEYLKNLPSL   90 (388)
T ss_pred             HHHhhhhcccCCCcc--HHHH--HHhcccceeEEeeccccccchh--HHHHHHHHHHHHH-hcccccHHHHHHHhcCchh
Confidence            455667777777765  4442  2467778888888888887765  5667778888888 777776644 333567788


Q ss_pred             cEEEecCccc
Q psy8031          89 VKLELQRNKL   98 (127)
Q Consensus        89 ~~l~l~~n~~   98 (127)
                      +.|.+..|..
T Consensus        91 r~LWL~ENPC  100 (388)
T KOG2123|consen   91 RTLWLDENPC  100 (388)
T ss_pred             hhHhhccCCc
Confidence            8888777754

>KOG2123|consensus

Probab=96.59  E-value=5.5e-05  Score=48.74  Aligned_cols=58  Identities=29%  Similarity=0.461  Sum_probs=25.6

Q ss_pred             CCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCccccccCh-hhhcCCccccEEeccCC
Q psy8031          60 STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNN  120 (127)
Q Consensus        60 ~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n  120 (127)
                      ++.|+.|.|+ -|.++.+.+  +..|++|+.++|+.|.|.++.+ ..++++++|+.|.+..|
T Consensus        40 Mp~lEVLsLS-vNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   40 MPLLEVLSLS-VNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN   98 (388)
T ss_pred             cccceeEEee-ccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence            3444444444 444444433  3344444444454444444433 12234444444444444

>KOG2739|consensus

Probab=96.59  E-value=0.0017  Score=41.33  Aligned_cols=13  Identities=31%  Similarity=0.572  Sum_probs=6.8

Q ss_pred             CCCCCcEEEecCC
Q psy8031          35 NLPLLNTVILGES   47 (127)
Q Consensus        35 ~~~~l~~l~l~~n   47 (127)
                      .++.|+.|.++.|
T Consensus        63 ~Lp~LkkL~lsdn   75 (260)
T KOG2739|consen   63 KLPKLKKLELSDN   75 (260)
T ss_pred             CcchhhhhcccCC
Confidence            3445555555555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=96.58  E-value=0.0017  Score=26.21  Aligned_cols=23  Identities=30%  Similarity=0.531  Sum_probs=19.8

Q ss_pred             CccceEEEecCCcCcccccCccccC
Q psy8031          10 MKYLQVIKISYHKDSLKELPSGLFA   34 (127)
Q Consensus        10 ~~~l~~l~l~~~~~~~~~~~~~~~~   34 (127)
                      +++|+.|++++|++.  .+|+++|.
T Consensus         1 L~~L~~L~L~~N~l~--~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLS--SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC--cCCHHHcc
Confidence            467899999999987  99998875

>smart00370 LRR Leucine-rich repeats, outliers

Probab=96.58  E-value=0.0017  Score=26.21  Aligned_cols=23  Identities=30%  Similarity=0.531  Sum_probs=19.8

Q ss_pred             CccceEEEecCCcCcccccCccccC
Q psy8031          10 MKYLQVIKISYHKDSLKELPSGLFA   34 (127)
Q Consensus        10 ~~~l~~l~l~~~~~~~~~~~~~~~~   34 (127)
                      +++|+.|++++|++.  .+|+++|.
T Consensus         1 L~~L~~L~L~~N~l~--~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLS--SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC--cCCHHHcc
Confidence            467899999999987  99998875

>KOG2982|consensus

Probab=96.55  E-value=0.001  Score=43.52  Aligned_cols=87  Identities=18%  Similarity=0.216  Sum_probs=61.0

Q ss_pred             CCCCCcEEEecCCcccccCh--hhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCcccc--ccChhhhcCCc
Q psy8031          35 NLPLLNTVILGESSIAELPS--DLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK--YLPENLFESLK  110 (127)
Q Consensus        35 ~~~~l~~l~l~~n~~~~~~~--~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~--~~~~~~~~~~~  110 (127)
                      .+...+.+|+.+|.++....  .....+|.++.|+++ .|.+..-....-....+++.+-+.++.+.  ..... ...++
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls-~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~-l~~lP  146 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLS-CNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSS-LDDLP  146 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeecc-CCcCCCccccCcccccceEEEEEcCCCCChhhhhhh-hhcch
Confidence            45678899999999885432  335678999999999 99887443332123568899999888653  33333 46778


Q ss_pred             cccEEeccCCccc
Q psy8031         111 ELYTLNLKNNQLE  123 (127)
Q Consensus       111 ~l~~l~l~~n~i~  123 (127)
                      ++++++++.|..+
T Consensus       147 ~vtelHmS~N~~r  159 (418)
T KOG2982|consen  147 KVTELHMSDNSLR  159 (418)
T ss_pred             hhhhhhhccchhh
Confidence            8888888888554

>KOG2739|consensus

Probab=96.25  E-value=0.0051  Score=39.23  Aligned_cols=87  Identities=21%  Similarity=0.244  Sum_probs=56.1

Q ss_pred             CCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCe---eecchhhccCCCCcEEEecCccccccChh-hhcCC
Q psy8031          34 ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT---SLPSTLFRDCKKLVKLELQRNKLKYLPEN-LFESL  109 (127)
Q Consensus        34 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~---~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-~~~~~  109 (127)
                      ..+..++.+.+.+..++.+..  |..++.|+.|.++ .|...   .+..-+ ..+++++++++++|+++.+... -...+
T Consensus        40 d~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~ls-dn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l  115 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLTN--FPKLPKLKKLELS-DNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKEL  115 (260)
T ss_pred             ccccchhhhhhhccceeeccc--CCCcchhhhhccc-CCcccccccceehh-hhCCceeEEeecCCccccccccchhhhh
Confidence            445566666666666665543  5668899999999 88433   222222 3458999999999998753221 01344


Q ss_pred             ccccEEeccCCcccc
Q psy8031         110 KELYTLNLKNNQLEN  124 (127)
Q Consensus       110 ~~l~~l~l~~n~i~~  124 (127)
                      .+|..|++..+....
T Consensus       116 ~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVTN  130 (260)
T ss_pred             cchhhhhcccCCccc
Confidence            567788887776543

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.13  E-value=0.024  Score=38.95  Aligned_cols=62  Identities=24%  Similarity=0.420  Sum_probs=45.3

Q ss_pred             CCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCc-cccccCh
Q psy8031          35 NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN-KLKYLPE  103 (127)
Q Consensus        35 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~  103 (127)
                      .+..+..|++++|.++.+|.  +  ..+|+.|.+.+.+.+..+|...   ..+|+.|.++++ .+..+|.
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE  112 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc
Confidence            47889999999999998872  2  3579999998336777666543   257888888877 5665554

>KOG2120|consensus

Probab=95.98  E-value=0.00045  Score=45.13  Aligned_cols=110  Identities=15%  Similarity=0.135  Sum_probs=46.2

Q ss_pred             hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCC-cccccCh-hhhcCCCCCcEEEecCCCCCee-e-cchhh
Q psy8031           7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES-SIAELPS-DLFWNSTNITNIVLTGHKKLTS-L-PSTLF   82 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~-~~~~~~~~l~~l~l~~~n~~~~-~-~~~~~   82 (127)
                      +..|.+|+.|.+.++++. ..+-.. ...-..|..++++++ .+++-.. -.+..+..|..|+++ +..... . .-.+-
T Consensus       206 Ls~C~kLk~lSlEg~~Ld-D~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNls-Wc~l~~~~Vtv~V~  282 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGLRLD-DPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLS-WCFLFTEKVTVAVA  282 (419)
T ss_pred             HHHHHhhhhccccccccC-cHHHHH-HhccccceeeccccccccchhHHHHHHHhhhhHhhcCch-HhhccchhhhHHHh
Confidence            344555555555555442 112222 234445555555543 3333221 124445555555555 443321 0 00000


Q ss_pred             ccCCCCcEEEecCcc--c--cccChhhhcCCccccEEeccCC
Q psy8031          83 RDCKKLVKLELQRNK--L--KYLPENLFESLKELYTLNLKNN  120 (127)
Q Consensus        83 ~~~~~l~~l~l~~n~--~--~~~~~~~~~~~~~l~~l~l~~n  120 (127)
                      .--+++.+++++|..  +  .++..- -..++.+.+||+++|
T Consensus       283 hise~l~~LNlsG~rrnl~~sh~~tL-~~rcp~l~~LDLSD~  323 (419)
T KOG2120|consen  283 HISETLTQLNLSGYRRNLQKSHLSTL-VRRCPNLVHLDLSDS  323 (419)
T ss_pred             hhchhhhhhhhhhhHhhhhhhHHHHH-HHhCCceeeeccccc
Confidence            011244455554431  1  122111 135677778888775

>KOG2120|consensus

Probab=95.50  E-value=0.00027  Score=46.11  Aligned_cols=86  Identities=19%  Similarity=0.240  Sum_probs=50.4

Q ss_pred             cceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecc-hhhccCCCCcE
Q psy8031          12 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TLFRDCKKLVK   90 (127)
Q Consensus        12 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~-~~~~~~~~l~~   90 (127)
                      +++.+|+++..++...+. .++..+..|+.+.++++++.+-.......-..|+.++++..+.++...- ..+..|+.|..
T Consensus       186 Rlq~lDLS~s~it~stl~-~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLH-GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHH-HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            466677777665422222 2345667777777777777643333334456677777773355654322 33456777777


Q ss_pred             EEecCccc
Q psy8031          91 LELQRNKL   98 (127)
Q Consensus        91 l~l~~n~~   98 (127)
                      ++++.+.+
T Consensus       265 LNlsWc~l  272 (419)
T KOG2120|consen  265 LNLSWCFL  272 (419)
T ss_pred             cCchHhhc
Confidence            77776643

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=94.47  E-value=0.029  Score=22.73  Aligned_cols=17  Identities=41%  Similarity=0.591  Sum_probs=10.9

Q ss_pred             cccEEeccCCcccccCC
Q psy8031         111 ELYTLNLKNNQLENITR  127 (127)
Q Consensus       111 ~l~~l~l~~n~i~~~~~  127 (127)
                      .|+.|++++|.++++|+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            45666667777666663

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=93.57  E-value=0.067  Score=21.68  Aligned_cols=16  Identities=31%  Similarity=0.569  Sum_probs=12.1

Q ss_pred             ccccEEeccCCccccc
Q psy8031         110 KELYTLNLKNNQLENI  125 (127)
Q Consensus       110 ~~l~~l~l~~n~i~~~  125 (127)
                      .+|+.|+++.|+|+.+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            4677888888887765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.57  E-value=0.18  Score=33.15  Aligned_cols=115  Identities=19%  Similarity=0.251  Sum_probs=75.8

Q ss_pred             hhcCCccceEEEecCCcCcccccCcccc-------------CCCCCCcEEEecCCcccccChh----hhcCCCCCcEEEe
Q psy8031           6 LFAEMKYLQVIKISYHKDSLKELPSGLF-------------ANLPLLNTVILGESSIAELPSD----LFWNSTNITNIVL   68 (127)
Q Consensus         6 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~-------------~~~~~l~~l~l~~n~~~~~~~~----~~~~~~~l~~l~l   68 (127)
                      ..+..+.+..|.+.+|++.  .+.....             ..-|.|++++...|++..-+..    .+.....+..+.+
T Consensus       115 ~is~~t~l~HL~l~NnGlG--p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki  192 (388)
T COG5238         115 LISSSTDLVHLKLNNNGLG--PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKI  192 (388)
T ss_pred             HHhcCCCceeEEeecCCCC--ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEe
Confidence            4466788999999999864  4433222             2347789999988887754432    2333457888888


Q ss_pred             cCCCCCeee--cchhhc---cCCCCcEEEecCccccccCh----hhhcCCccccEEeccCCccc
Q psy8031          69 TGHKKLTSL--PSTLFR---DCKKLVKLELQRNKLKYLPE----NLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        69 ~~~n~~~~~--~~~~~~---~~~~l~~l~l~~n~~~~~~~----~~~~~~~~l~~l~l~~n~i~  123 (127)
                      . .|.+..-  ..-.|.   .+++|+.++++.|.++...+    ...+.|+.|+.|.+..+.++
T Consensus       193 ~-qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         193 Q-QNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             e-ecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            8 8876522  111222   36789999999998874433    33456677888888877654

>KOG0473|consensus

Probab=92.39  E-value=0.0013  Score=41.67  Aligned_cols=83  Identities=13%  Similarity=0.205  Sum_probs=46.3

Q ss_pred             CCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCccccccChhhhcCCccccEE
Q psy8031          36 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTL  115 (127)
Q Consensus        36 ~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l  115 (127)
                      ....+.||++.|++-.+... |+.+..+..++++ .|.+..+|... .....+..+++..|.....|-. ++..+.++.+
T Consensus        41 ~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~s-knq~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s-~~k~~~~k~~  116 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLS-KNQIKFLPKDA-KQQRETVNAASHKNNHSQQPKS-QKKEPHPKKN  116 (326)
T ss_pred             cceeeeehhhhhHHHhhccc-hHHHHHHHHHhcc-HhhHhhChhhH-HHHHHHHHHHhhccchhhCCcc-ccccCCcchh
Confidence            44555666666665554443 4445556666666 66666555542 3334455556666666666555 3555666666


Q ss_pred             eccCCcc
Q psy8031         116 NLKNNQL  122 (127)
Q Consensus       116 ~l~~n~i  122 (127)
                      ++.+|.+
T Consensus       117 e~k~~~~  123 (326)
T KOG0473|consen  117 EQKKTEF  123 (326)
T ss_pred             hhccCcc
Confidence            6555543

>KOG0473|consensus

Probab=92.37  E-value=0.0017  Score=41.14  Aligned_cols=76  Identities=22%  Similarity=0.399  Sum_probs=58.0

Q ss_pred             cccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          48 SIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        48 ~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      .++++|-...........+|++ .|++..+... |+-++.+.+++++.|.+..+|.+ ++....+..+++..|+.+..|
T Consensus        29 ~~s~~~v~ei~~~kr~tvld~~-s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~p  104 (326)
T KOG0473|consen   29 ELSEIPVREIASFKRVTVLDLS-SNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQP  104 (326)
T ss_pred             Hhcccchhhhhccceeeeehhh-hhHHHhhccc-hHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhCC
Confidence            3444443323345677889999 9988887766 57778899999999999999998 488888888998888777655

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.61  E-value=0.11  Score=20.28  Aligned_cols=14  Identities=50%  Similarity=0.653  Sum_probs=7.8

Q ss_pred             ccccEEeccCCccc
Q psy8031         110 KELYTLNLKNNQLE  123 (127)
Q Consensus       110 ~~l~~l~l~~n~i~  123 (127)
                      ++|+.|++++|.|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            45667777777665

...

>KOG3864|consensus

Probab=90.50  E-value=0.067  Score=33.24  Aligned_cols=80  Identities=19%  Similarity=0.123  Sum_probs=43.0

Q ss_pred             CCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh-ccCCCCcEEEecCc-cccccChhhhcCCccccEE
Q psy8031          38 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF-RDCKKLVKLELQRN-KLKYLPENLFESLKELYTL  115 (127)
Q Consensus        38 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~-~~~~~l~~l~l~~n-~~~~~~~~~~~~~~~l~~l  115 (127)
                      .++.++-++..+....-..+.++..++.+.+.+...+....-+-. ...++|+.|+++++ .|++-....+...++|+.+
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            356666677776665554566666666666651123322111101 12457777887766 5665554444455555555


Q ss_pred             ec
Q psy8031         116 NL  117 (127)
Q Consensus       116 ~l  117 (127)
                      .+
T Consensus       182 ~l  183 (221)
T KOG3864|consen  182 HL  183 (221)
T ss_pred             Hh
Confidence            44

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=87.69  E-value=0.47  Score=19.36  Aligned_cols=14  Identities=43%  Similarity=0.579  Sum_probs=9.3

Q ss_pred             ccccEEeccCCccc
Q psy8031         110 KELYTLNLKNNQLE  123 (127)
Q Consensus       110 ~~l~~l~l~~n~i~  123 (127)
                      ++|+.|++++|.+.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            35677777777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	127
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		7e-12
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		5e-04
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		1e-11
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		6e-11
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-10
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		6e-04
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-10
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		6e-04
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		4e-10
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		1e-08
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		1e-08
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		7e-07
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		1e-06
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		1e-06
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		1e-06
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		7e-06
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		1e-05
4arn_A	279	Crystal Structure Of The N-terminal Domain Of Droso		1e-05
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		5e-05
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		7e-05
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		8e-05
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		1e-04
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		1e-04
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		1e-04
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		2e-04
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		4e-04
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		4e-04
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		4e-04
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		5e-04
3twi_D	179	Variable Lymphocyte Receptor Recognition Of The Imm		5e-04
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		5e-04
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		6e-04
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		6e-04
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		7e-04
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		7e-04

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
            P  +F E+K L+ + ++ +K  L+ LP G+F  L  L  + L  + +  LP  +F + T
Sbjct: 76  LPAGIFKELKNLETLWVTDNK--LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133
Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
            +T + L G+ +L SLP  +F     L +L L  N+LK +PE  F+ L EL TL L NNQ
Sbjct: 134 KLTYLSL-GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192
Query: 122 LENI 125
           L+ +
Sbjct: 193 LKRV 196

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
           N  N V    KKLT++PS +  D K   KL+LQ NKL  LP   F  L +L  L L +N+
Sbjct: 16  NNKNSVDCSSKKLTAIPSNIPADTK---KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72
Query: 122 LENI 125
           L+ +
Sbjct: 73  LQTL 76

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 23  DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82
           + L+ LP+G+F  L  L  ++L E+ +  LP  +F   TN+T + L  H +L SLP  +F
Sbjct: 95  NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLY-HNQLQSLPKGVF 153
Query: 83  RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
                L +L+L  N+L+ LPE +F+ L +L  L+L +NQL+++
Sbjct: 154 DKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 23  DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82
           + L+ LP+G+F  L  L  ++L E+ +  LP  +F   TN+T + L  H +L SLP  +F
Sbjct: 95  NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL-AHNQLQSLPKGVF 153
Query: 83  RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
                L +L+L  N+L+ LPE +F+ L +L  L L  NQL+++
Sbjct: 154 DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
Query: 7   FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
           F  +  L  + + Y++  L+ L +G+F +L  L T+ L  + +A LP  +F + T +  +
Sbjct: 55  FRGLTKLTWLNLDYNQ--LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112
Query: 67  VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
            L G++ L SLPS +F    KL +L L  N+L+ +P   F+ L  L TL+L  NQL+++
Sbjct: 113 YLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 74  LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           L +L    FR   KL  L L  N+L+ L   +F+ L EL TL L NNQL ++
Sbjct: 47  LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
Query: 7   FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
           F  +  L  + + Y++  L+ L +G+F +L  L T+ L  + +A LP  +F + T +  +
Sbjct: 55  FRGLTKLTWLNLDYNQ--LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112
Query: 67  VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
            L G++ L SLPS +F    KL +L L  N+L+ +P   F+ L  L TL+L  NQL+++
Sbjct: 113 YLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 74  LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           L +L    FR   KL  L L  N+L+ L   +F+ L EL TL L NNQL ++
Sbjct: 47  LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
           P  + A+  YL +       +SLK LP+G+F  L  L  + LG + +  LP+ +F   T+
Sbjct: 23  PTGIPAQTTYLDL-----ETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77
Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +T + L+ ++ L SLP+ +F    +L +L L  N+L+ LP+ +F+ L +L  L L  NQL
Sbjct: 78  LTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Query: 123 ENI 125
           +++
Sbjct: 137 KSV 139

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 22  KDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81
           +  L+EL  GLF  L  L  + L ++++  LP D F +  N+T++ L G  +++S+P   
Sbjct: 113 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERA 171
Query: 82  FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           FR    L +L L +N++ ++  + F  L  L TL L  N L  +
Sbjct: 172 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 215

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 22  KDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL 81
           +  L+EL  GLF  L  L  + L ++++  LP D F +  N+T++ L G  +++S+P   
Sbjct: 114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERA 172
Query: 82  FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           FR    L +L L +N++ ++  + F  L  L TL L  N L  +
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 7   FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
           F  + +L  + +   +  L+EL  GLF  L  L  + L ++++  LP + F +  N+T++
Sbjct: 100 FRGLGHLHTLHLD--RCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHL 157
Query: 67  VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123
            L G  ++ S+P   FR    L +L L +N +  +  + F  L  L TL L  N L 
Sbjct: 158 FLHG-NRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 15  VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL 74
           + +I   ++++K +P G F+    L  + L  + I+EL  D F    ++ ++VL G+K +
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-I 92
Query: 75  TSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
           T LP +LF     L  L L  NK+  L  + F+ L  L  L+L +N+L+ I +
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 15  VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL 74
           + +I   ++++K +P G F+    L  + L  + I+EL  D F    ++ ++VL G+K +
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-I 92
Query: 75  TSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
           T LP +LF     L  L L  NK+  L  + F+ L  L  L+L +N+L+ I +
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAK 145

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 15  VIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKL 74
             ++    + L+ LP G+F  L  L  + L ++ I  LP  +F   T +T I+     KL
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT-ILYLHENKL 88
Query: 75  TSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
            SLP+ +F    +L +L L  N+LK +P+ +F+ L  L  + L  N
Sbjct: 89  QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 18  ISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSL 77
           +++   ++++LP+ L  +   +  + L +  I E+ +  F  +  I  + + G   +  L
Sbjct: 50  VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYM-GFNAIRYL 108
Query: 78  PSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           P  +F++   L  L L+RN L  LP  +F +  +L TL++ NN LE I
Sbjct: 109 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 156

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 18  ISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSL 77
           +++   ++++LP+ L  +   +  + L +  I E+ +  F  +  I  + + G   +  L
Sbjct: 56  VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYM-GFNAIRYL 114
Query: 78  PSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           P  +F++   L  L L+RN L  LP  +F +  +L TL++ NN LE I
Sbjct: 115 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 162

>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila Toll Receptor Length = 279

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 49  IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFES 108
           +  +P++L  +  N++++ L  +  +  +PS LF D + L  +E   NKL+ +P  +F  
Sbjct: 135 LTHIPANLLTDMRNLSHLELRAN--IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGK 192
Query: 109 LKELYTLNLKNNQLENI 125
           + +L  LNL +NQL+++
Sbjct: 193 MPKLKQLNLASNQLKSV 209

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 41  TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY 100
           TV     S+A +P+ +       T ++     ++T L   +F    +L +L+L  N+L  
Sbjct: 13  TVDCSGKSLASVPTGI----PTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 101 LPENLFESLKELYTLNLKNNQLENITR 127
           LP  +F+ L +L  L+L +NQL++I R
Sbjct: 69  LPAGVFDKLTQLTQLSLNDNQLKSIPR 95

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 41  TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY 100
           TV     S+A +P+ +       T ++     ++T L   +F    +L +L+L  N+L  
Sbjct: 13  TVDCSGKSLASVPTGI----PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 101 LPENLFESLKELYTLNLKNNQLENITR 127
           LP  +F+ L +L  L+L +NQL++I R
Sbjct: 69  LPAGVFDKLTQLTQLSLNDNQLKSIPR 95

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 41  TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY 100
           TV     S+A +P+ +       T ++     ++T L   +F    +L +L+L  N+L  
Sbjct: 21  TVDCSGKSLASVPTGI----PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 76
Query: 101 LPENLFESLKELYTLNLKNNQLENITR 127
           LP  +F+ L +L  L+L +NQL++I R
Sbjct: 77  LPAGVFDKLTQLTQLSLNDNQLKSIPR 103

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 10  MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
           M Y ++ +++  +  L +L   +   LP+L T+ L  + +  LP  L   +     ++  
Sbjct: 52  MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 70  GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
              +LTSLP    R   +L +L L+ N+LK LP  L     +L  L+L NNQL
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 10  MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
           M Y ++ +++  +  L +L   +   LP+L T+ L  + +  LP  L   +     ++  
Sbjct: 52  MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 70  GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
              +LTSLP    R   +L +L L+ N+LK LP  L     +L  L+L NNQL  +
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 10  MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
           M Y ++ +++  +  L +L   +   LP+L T+ L  + +  LP  L   +     ++  
Sbjct: 52  MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 70  GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
              +LTSLP    R   +L +L L+ N+LK LP  L     +L  L+L NNQL
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 10  MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
           M Y ++ +++  +  L +L   +   LP+L T+ L  + +  LP  L   +     ++  
Sbjct: 52  MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 70  GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
              +LTSLP    R   +L +L L+ N+LK LP  L     +L  L+L NNQL  +
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 25  LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD 84
           L  LP G+F +L  L  + LG + +  LPS +F    ++  + +  + KLT LP  + R 
Sbjct: 76  LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIER- 133
Query: 85  CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
              L  L L +N+LK +P   F+ L  L    L  N  +   R
Sbjct: 134 LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 14  QVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKK 73
           Q  K+   +  L E+P G+ +N   LN   L E++I  + +D F +  ++  ++  G   
Sbjct: 55  QFSKVVCTRRGLSEVPQGIPSNTRYLN---LMENNIQMIQADTFRHLHHL-EVLQLGRNS 110
Query: 74  LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           +  +    F     L  LEL  N L  +P   FE L +L  L L+NN +E+I
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI 162

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 10  MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
           M Y ++ +++  +  L +L   +   LP+L T+ L  + +  LP  L   +     ++  
Sbjct: 52  MPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 70  GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
              +LTSLP    R   +L +L L+ N+LK LP  L     +L  L+L NN L
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 10  MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
           M Y ++ +++  +  L +L   +   LP+L T+ L  + +  LP  L   +     ++  
Sbjct: 52  MPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 70  GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
              +LTSLP    R   +L +L L+ N+LK LP  L     +L  L+L NN L
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160

>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The Immunodominant Glycoprotein Of Bacillus Anthracis Spores Length = 179

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 18  ISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSL 77
           ++  + SL  +P+G+     +L+  I   + I +L   +F + T +T + L    +LT+L
Sbjct: 24  VNCQERSLASVPAGIPTTTQVLHLYI---NQITKLEPGVFDSLTQLTYLNL-AVNQLTAL 79
Query: 78  PSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
           P  +F    KL  L L  N+LK +P  +F++LK L  + L NN
Sbjct: 80  PVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 10  MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
           M Y ++ +++  +  L +L   +   LP+L T+ L  + +  LP  L   +     ++  
Sbjct: 52  MPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 70  GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
              +LTSLP    R   +L +L L+ N+LK LP  L     +L  L+L NN L
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 10  MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
           M Y ++ +++  +  L +L   +   LP+L T+ L  + +  LP  L   +     ++  
Sbjct: 52  MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 70  GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
              +LTSLP    R   +L +L L+ N+LK LP  L     +L  L+L NN L
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDL 160

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 10  MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
           M Y ++ +++  +  L +L   +   LP+L T+ L  + +  LP  L   +     ++  
Sbjct: 53  MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 108
Query: 70  GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
              +LTSLP    R   +L +L L+ N+LK LP  L     +L  L+L NN L
Sbjct: 109 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 161

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 10  MKYLQVIKISYHKDSLKELPSGLFANLPLLNT-VILGESSIAELPSD-LFWNSTNITNIV 67
           M + +   +      LKE+P     ++PL  T ++L ++ +  + SD LF    ++  + 
Sbjct: 5   MCHCEGTTVDCTGRGLKEIPR----DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLE 60
Query: 68  LTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           L    +LT +    F     + +L+L  NK+K +   +F  L +L TLNL +NQ+  +
Sbjct: 61  LK-RNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 10  MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
           M Y ++ +++  +  L +L   +   LP+L T+ L  + +  LP  L   +     ++  
Sbjct: 52  MPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDV 107
Query: 70  GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
              +LTSLP    R   +L +L L+ N+LK LP  L     +L  L+L NN L
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	127
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-19
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-15
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-18
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-16
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-16
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-16
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-15
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-12
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-14
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-13
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-10
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-10
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-10
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-10
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	1e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-04
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	9e-05
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	6e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-04
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.0 bits (203), Expect = 4e-20
 Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
               F  +  L  + +      L+EL  GLF  L  L  + L ++++  LP D F +  N
Sbjct: 97  DPATFHGLGRLHTLHLDRCG--LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +T++ L    +++S+P   FR    L +L L +N++ ++  + F  L  L TL L  N L
Sbjct: 155 LTHLFL-HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 123 ENI 125
             +
Sbjct: 214 SAL 216

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 79.3 bits (196), Expect = 4e-19
 Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 5/124 (4%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
            P  + A  + + +     H + +  +P+  F     L  + L  + +A + +  F    
Sbjct: 26  VPVGIPAASQRIFL-----HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA 80

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
            +  + L+ + +L S+    F    +L  L L R  L+ L   LF  L  L  L L++N 
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140

Query: 122 LENI 125
           L+ +
Sbjct: 141 LQAL 144

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 76.6 bits (189), Expect = 3e-18
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
               F  +  L+ + +S     L+ +    F  L  L+T+ L    + EL   LF     
Sbjct: 72  DAAAFTGLALLEQLDLS-DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +  + L     L +LP   FRD   L  L L  N++  +PE  F  L  L  L L  N++
Sbjct: 131 LQYLYL-QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 123 ENITR 127
            ++  
Sbjct: 190 AHVHP 194

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.4 bits (186), Expect = 1e-17
 Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 3/120 (2%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
              LF  +  LQ + +  +   L+ LP   F +L  L  + L  + I+ +P   F    +
Sbjct: 121 GPGLFRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +  ++L  ++ +  +    FRD  +L+ L L  N L  LP      L+ L  L L +N  
Sbjct: 179 LDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 62.3 bits (152), Expect = 6e-13
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
            L+ +P G+ A    +    L  + I+ +P+  F    N+T + L     L  + +  F 
Sbjct: 22  GLQAVPVGIPAASQRIF---LHGNRISHVPAASFRACRNLTILWL-HSNVLARIDAAAFT 77

Query: 84  DCKKLVKLELQRN-KLKYLPENLFESLKELYTLNLKNNQLENI 125
               L +L+L  N +L+ +    F  L  L+TL+L    L+ +
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 71  HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
            + L ++P  +        ++ L  N++ ++P   F + + L  L L +N L  I  
Sbjct: 20  QQGLQAVPVGIPAA---SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 78.9 bits (195), Expect = 2e-19
 Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 1/102 (0%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
           ++K +P G F+    L  + L  + I+EL  D F    ++ ++VL    K+T LP +LF 
Sbjct: 43  TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY-GNKITELPKSLFE 101

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
               L  L L  NK+  L  + F+ L  L  L+L +N+L+ I
Sbjct: 102 GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI 143

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 69.3 bits (170), Expect = 1e-15
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
           P   F+  K L+ I +S ++  + EL    F  L  LN+++L  + I ELP  LF    +
Sbjct: 48  PPGAFSPYKKLRRIDLSNNQ--ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFS 105

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
           +  ++L    K+  L    F+D   L  L L  NKL+ + +  F  L+ + T++L  N
Sbjct: 106 LQLLLL-NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.6 bits (137), Expect = 5e-11
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 61  TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
             IT I L     +  +P   F   KKL +++L  N++  L  + F+ L+ L +L L  N
Sbjct: 32  ETITEIRL-EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90

Query: 121 QLENI 125
           ++  +
Sbjct: 91  KITEL 95

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 80.6 bits (199), Expect = 4e-19
 Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 1/125 (0%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
               F  ++   V      K  +  L   +F++   L  + L ++ I ++  + FW  T+
Sbjct: 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +  + L+    L S+ S +F +  KL  L+L  N ++ L +  F  L  L  L L  NQL
Sbjct: 325 LLKLNLS-QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383

Query: 123 ENITR 127
           +++  
Sbjct: 384 KSVPD 388

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 71.7 bits (176), Expect = 6e-16
 Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
            K +F+    L+ + ++ ++  + ++    F  L  L  + L ++ +  + S +F N   
Sbjct: 291 LKSVFSHFTDLEQLTLAQNE--INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +  + L  +  + +L    F     L +L L  N+LK +P+ +F+ L  L  + L  N  
Sbjct: 349 LEVLDL-SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.4 bits (139), Expect = 5e-11
 Identities = 20/83 (24%), Positives = 31/83 (37%)

Query: 44  LGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE 103
           L  +SIAEL    F    ++  + +        + +  FR    L+ L+L  N+   L  
Sbjct: 37  LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET 96

Query: 104 NLFESLKELYTLNLKNNQLENIT 126
             F  L  L  L L    L+   
Sbjct: 97  GAFNGLANLEVLTLTQCNLDGAV 119

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 27/130 (20%), Positives = 60/130 (46%), Gaps = 8/130 (6%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE--LPSDLFWNS 60
             + F  +  L ++K+ Y++    +L +G F  L  L  + L + ++    L  + F   
Sbjct: 71  RNNTFRGLSSLIILKLDYNQ--FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL 128

Query: 61  TNITNIVLTGHKKLTSL-PSTLFRDCKKLVKLELQRNKLKYLPENLFESL--KELYTLNL 117
           T++  +VL  +  +  + P++ F + ++   L+L  NK+K + E    +   K    L L
Sbjct: 129 TSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187

Query: 118 KNNQLENITR 127
            +  L+++  
Sbjct: 188 SSITLQDMNE 197

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.5 bits (108), Expect = 8e-07
 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 12/134 (8%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL-PSDLFWNST 61
               F  +  L+V+ ++        L    F  L  L  ++L +++I ++ P+  F N  
Sbjct: 95  ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154

Query: 62  NITNIVLTGHKKLTSLPSTLFRDC--KKLVKLELQRNKLKYLPEN--------LFESLKE 111
               + LT   K+ S+      +   K    L L    L+ + E                
Sbjct: 155 RFHVLDLTF-NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213

Query: 112 LYTLNLKNNQLENI 125
           + TL+L  N  +  
Sbjct: 214 ITTLDLSGNGFKES 227

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 76.6 bits (189), Expect = 4e-18
 Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 3/125 (2%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
           P  +F E+K L+ + ++ +K  L+ LP G+F  L  L  + L  + +  LP  +F + T 
Sbjct: 77  PAGIFKELKNLETLWVTDNK--LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +T + L G+ +L SLP  +F     L +L L  N+LK +PE  F+ L EL TL L NNQL
Sbjct: 135 LTYLSL-GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193

Query: 123 ENITR 127
           + +  
Sbjct: 194 KRVPE 198

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 75.0 bits (185), Expect = 1e-17
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 1/105 (0%)

Query: 21  HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80
             + L  LPS  F  L  L  + L ++ +  LP+ +F    N+  + +T   KL +LP  
Sbjct: 45  QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD-NKLQALPIG 103

Query: 81  LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           +F     L +L L RN+LK LP  +F+SL +L  L+L  N+L+++
Sbjct: 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 64.6 bits (158), Expect = 8e-14
 Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
           P  +F ++  L  +++  ++  LK LP  +F +L  L  + LG + +  LP  +F   T+
Sbjct: 101 PIGVFDQLVNLAELRLDRNQ--LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
           +  + L  + +L  +P   F    +L  L+L  N+LK +PE  F+SL++L  L L+ N
Sbjct: 159 LKELRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 72  KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           KKLT++PS +  D     KL+LQ NKL  LP   F  L +L  L L +N+L+ +
Sbjct: 26  KKLTAIPSNIPAD---TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL 76

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 76.5 bits (189), Expect = 4e-18
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
           P +L    K L +       + L+ L S  F + P L  + L    I  +    + + ++
Sbjct: 23  PDNLPFSTKNLDL-----SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           ++ ++LTG   + SL    F     L KL      L  L       LK L  LN+ +N +
Sbjct: 78  LSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 123 ENI 125
           ++ 
Sbjct: 137 QSF 139

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.8 bits (174), Expect = 4e-16
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 4/124 (3%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
               F     LQV+ +S  +  ++ +  G + +L  L+T+IL  + I  L    F   ++
Sbjct: 44  GSYSFFSFPELQVLDLSRCE--IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQ 121
           +  +V      L SL +      K L +L +  N ++       F +L  L  L+L +N+
Sbjct: 102 LQKLVAV-ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 122 LENI 125
           +++I
Sbjct: 161 IQSI 164

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.3 bits (152), Expect = 6e-13
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 9/128 (7%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS-DLFWNST 61
               F+ +  LQ +        L  L +    +L  L  + +  + I      + F N T
Sbjct: 92  ALGAFSGLSSLQKLVAVETN--LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKL----VKLELQRNKLKYLPENLFESLKELYTLNL 117
           N+ ++ L    K+ S+  T  R   ++    + L+L  N + ++    F+ ++ L  L L
Sbjct: 150 NLEHLDL-SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELAL 207

Query: 118 KNNQLENI 125
             NQL+++
Sbjct: 208 DTNQLKSV 215

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.1 bits (149), Expect = 2e-12
 Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 4/103 (3%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
           +  ++P  L  +   L+   L  + +  L S  F++   +  + L    ++ ++    ++
Sbjct: 18  NFYKIPDNLPFSTKNLD---LSFNPLRHLGSYSFFSFPELQVLDL-SRCEIQTIEDGAYQ 73

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
               L  L L  N ++ L    F  L  L  L      L ++ 
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.7 bits (140), Expect = 3e-11
 Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 7/122 (5%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPS-GLFANLPLLNTVILGESSIAELPSDLFWNST 61
                  +K L+ + ++++   ++       F+NL  L  + L  + I  +         
Sbjct: 116 ENFPIGHLKTLKELNVAHNL--IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 62  NITNIVLT---GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 118
            +  + L+       +  +    F    +L +L L  N+LK +P+ +F+ L  L  + L 
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232

Query: 119 NN 120
            N
Sbjct: 233 TN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.7 bits (109), Expect = 6e-07
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 72  KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
                +P  L    K    L+L  N L++L    F S  EL  L+L   +++ I
Sbjct: 17  LNFYKIPDNLPFSTK---NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 75.5 bits (186), Expect = 7e-18
 Identities = 40/125 (32%), Positives = 67/125 (53%), Gaps = 3/125 (2%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
               F  +  L  + + Y++  L+ L +G+F +L  L T+ L  + +A LP  +F + T 
Sbjct: 51  SDATFRGLTKLTWLNLDYNQ--LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQ 108

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +  + L G  +L SLPS +F    KL +L L  N+L+ +P   F+ L  L TL+L  NQL
Sbjct: 109 LDKLYL-GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167

Query: 123 ENITR 127
           +++  
Sbjct: 168 QSVPH 172

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 59.7 bits (145), Expect = 5e-12
 Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
              +F ++  L  + ++ ++  L  LP G+F +L  L+ + LG + +  LPS +F   T 
Sbjct: 75  SAGVFDDLTELGTLGLANNQ--LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
           +  + L    +L S+P+  F     L  L L  N+L+ +P   F+ L +L T+ L  NQ
Sbjct: 133 LKELRL-NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.1 bits (120), Expect = 1e-08
 Identities = 22/53 (41%), Positives = 29/53 (54%)

Query: 73  KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
            L +L    FR   KL  L L  N+L+ L   +F+ L EL TL L NNQL ++
Sbjct: 46  GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 72  KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           K L S+PS +  D +KL   +LQ   L  L +  F  L +L  LNL  NQL+ +
Sbjct: 24  KSLDSVPSGIPADTEKL---DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL 74

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 75.9 bits (187), Expect = 8e-18
 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 4/121 (3%)

Query: 7   FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
              +  L  + +S+++  L+ LP  L   LP L  + +  + +  LP         +  +
Sbjct: 73  DGTLPVLGTLDLSHNQ--LQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129

Query: 67  VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
            L    +L +LP  L     KL KL L  N L  LP  L   L+ L TL L+ N L  I 
Sbjct: 130 YL-KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188

Query: 127 R 127
           +
Sbjct: 189 K 189

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.4 bits (170), Expect = 2e-15
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 9/123 (7%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
           P DL  +   L +      ++ L             L  + L  + + +L   +      
Sbjct: 26  PPDLPKDTTILHL-----SENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPV 78

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +  + L+ H +L SLP    +    L  L++  N+L  LP      L EL  L LK N+L
Sbjct: 79  LGTLDLS-HNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136

Query: 123 ENI 125
           + +
Sbjct: 137 KTL 139

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.0 bits (151), Expect = 1e-12
 Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 2/96 (2%)

Query: 25  LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD 84
           L  LP G    L  L  + L  + +  LP  L   +  +  + L  +  LT LP+ L   
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL-ANNNLTELPAGLLNG 170

Query: 85  CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
            + L  L LQ N L  +P+  F S   L    L  N
Sbjct: 171 LENLDTLLLQENSLYTIPKGFFGSHL-LPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.0 bits (130), Expect = 7e-10
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 29  PSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL 88
           P    + +     V   + ++  LP DL     + T + L+ +  L +          +L
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENL-LYTFSLATLMPYTRL 57

Query: 89  VKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
            +L L R +L  L   +  +L  L TL+L +NQL+++
Sbjct: 58  TQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSL 92

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 75.9 bits (187), Expect = 2e-17
 Identities = 30/123 (24%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
           P  L    + ++++ ++  +  ++E+ +  FA    +  + +G ++I  LP  +F N   
Sbjct: 61  PAALLDSFRQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +T +VL     L+SLP  +F +  KL  L +  N L+ + ++ F++   L  L L +N+L
Sbjct: 119 LTVLVL-ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177

Query: 123 ENI 125
            ++
Sbjct: 178 THV 180

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 67.8 bits (166), Expect = 1e-14
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 6/126 (4%)

Query: 1   MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 60
                 FA    +Q + + ++   ++ LP  +F N+PLL  ++L  + ++ LP  +F N+
Sbjct: 83  EIDTYAFAYAHTIQKLYMGFNA--IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 140

Query: 61  TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
             +T + +  +  L  +    F+    L  L+L  N+L ++  +L  SL      N+  N
Sbjct: 141 PKLTTLSM-SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH---ANVSYN 196

Query: 121 QLENIT 126
            L  + 
Sbjct: 197 LLSTLA 202

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.7 bits (132), Expect = 5e-10
 Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 24/139 (17%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLN----------------TVILGE 46
             D F     LQ +++S ++  L  +   L  +L   N                 +    
Sbjct: 157 EDDTFQATTSLQNLQLSSNR--LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 214

Query: 47  SSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLF 106
           +SI  +   +      +T + L  H  LT        +   LV+++L  N+L+ +  + F
Sbjct: 215 NSINVVRGPVN---VELTILKLQ-HNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPF 268

Query: 107 ESLKELYTLNLKNNQLENI 125
             ++ L  L + NN+L  +
Sbjct: 269 VKMQRLERLYISNNRLVAL 287

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 14/101 (13%), Positives = 35/101 (34%), Gaps = 4/101 (3%)

Query: 29  PSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT----GHKKLTSLPSTLFRD 84
           P     +  L    +  +  I     D+++   +IT          +  +  LP+ L   
Sbjct: 8   PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS 67

Query: 85  CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
            +++  L L   +++ +    F     +  L +  N +  +
Sbjct: 68  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL 108

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.2 bits (123), Expect = 8e-09
 Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
           S+  +   +   L +L    L  +++ +       N   +  + L  + +L  +    F 
Sbjct: 216 SINVVRGPVNVELTILK---LQHNNLTDTAW--LLNYPGLVEVDL-SYNELEKIMYHPFV 269

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
             ++L +L +  N+L  L     + +  L  L+L +N L ++ R
Sbjct: 270 KMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVER 312

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 8/119 (6%)

Query: 7   FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
                 L  + +SY++  L+++    F  +  L  + +  + +  L          +  +
Sbjct: 244 LLNYPGLVEVDLSYNE--LEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVL 300

Query: 67  VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
            L  H  L  +         +L  L L  N +  L  +   +LK    L L +N  +  
Sbjct: 301 DL-SHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTHHTLKN---LTLSHNDWDCN 354

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 76.3 bits (188), Expect = 2e-17
 Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 3/123 (2%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
               F  +  L+ + +  ++  LK +P G+F  L  L  + + E+ I  L   +F +  N
Sbjct: 72  EPGAFNNLFNLRTLGLRSNR--LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           + ++ + G   L  +    F     L +L L++  L  +P      L  L  L L++  +
Sbjct: 130 LKSLEV-GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 123 ENI 125
             I
Sbjct: 189 NAI 191

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 73.6 bits (181), Expect = 1e-16
 Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 6/124 (4%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
            P+ +  E + L +      K+ +K L    FA+ P L  + L E+ ++ +    F N  
Sbjct: 26  VPEGIPTETRLLDL-----GKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF 80

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
           N+  + L    +L  +P  +F     L KL++  NK+  L + +F+ L  L +L + +N 
Sbjct: 81  NLRTLGL-RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND 139

Query: 122 LENI 125
           L  I
Sbjct: 140 LVYI 143

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 73.2 bits (180), Expect = 2e-16
 Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 3/123 (2%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
               F+ +  L+ + +      L  +P+   ++L  L  + L   +I  +    F     
Sbjct: 144 SHRAFSGLNSLEQLTLEKCN--LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +  + ++    L ++          L  L +    L  +P      L  L  LNL  N +
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260

Query: 123 ENI 125
             I
Sbjct: 261 STI 263

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 73.2 bits (180), Expect = 2e-16
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 1/99 (1%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
           +L  +P     +L  L  + L  + I+ +   +      +  I L    +L  +    FR
Sbjct: 235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV-GGQLAVVEPYAFR 293

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
               L  L +  N+L  L E++F S+  L TL L +N L
Sbjct: 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 72.1 bits (177), Expect = 4e-16
 Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 3/125 (2%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
           P +  + +  L V+++ +   ++  +    F  L  L  + +      +  +       N
Sbjct: 168 PTEALSHLHGLIVLRLRH--LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +T++ +T H  LT++P    R    L  L L  N +  +  ++   L  L  + L   QL
Sbjct: 226 LTSLSIT-HCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284

Query: 123 ENITR 127
             +  
Sbjct: 285 AVVEP 289

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 70.9 bits (174), Expect = 1e-15
 Identities = 22/123 (17%), Positives = 52/123 (42%), Gaps = 3/123 (2%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
               F  +  L+V++IS H   L  +       L L  ++ +   ++  +P     +   
Sbjct: 192 RDYSFKRLYRLKVLEIS-HWPYLDTMTPNCLYGLNL-TSLSITHCNLTAVPYLAVRHLVY 249

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +  + L  +  ++++  ++  +  +L +++L   +L  +    F  L  L  LN+  NQL
Sbjct: 250 LRFLNL-SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308

Query: 123 ENI 125
             +
Sbjct: 309 TTL 311

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.7 bits (171), Expect = 3e-15
 Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 4/125 (3%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
           P  +F  +  L  + IS +K  +  L   +F +L  L ++ +G++ +  +    F    +
Sbjct: 96  PLGVFTGLSNLTKLDISENK--IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNL-KNNQ 121
           +  + L     LTS+P+        L+ L L+   +  + +  F+ L  L  L +     
Sbjct: 154 LEQLTL-EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212

Query: 122 LENIT 126
           L+ +T
Sbjct: 213 LDTMT 217

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 68.2 bits (167), Expect = 1e-14
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
               +P G+     LL+   LG++ I  L  D F +  ++  + L     ++++    F 
Sbjct: 22  RFVAVPEGIPTETRLLD---LGKNRIKTLNQDEFASFPHLEELELN-ENIVSAVEPGAFN 77

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           +   L  L L+ N+LK +P  +F  L  L  L++  N++  +
Sbjct: 78  NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL 119

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 64  TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123
              VL   K+  ++P  +  +      L+L +N++K L ++ F S   L  L L  N + 
Sbjct: 13  DRAVLCHRKRFVAVPEGIPTE---TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS 69

Query: 124 NI 125
            +
Sbjct: 70  AV 71

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.6 bits (186), Expect = 3e-17
 Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 4/123 (3%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
           P   F  +  L+ + +      L  +  G F  L  L  + L   ++ E+P+        
Sbjct: 152 PSYAFNRIPSLRRLDLG-ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIK 208

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +  + L     L+++    F+    L KL + +++++ +  N F++L+ L  +NL +N L
Sbjct: 209 LDELDL-SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267

Query: 123 ENI 125
             +
Sbjct: 268 TLL 270

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.0 bits (182), Expect = 8e-17
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 4/123 (3%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
               F  +  L  +++  ++  L  +P+G F  L  L  + L  + I  +PS  F    +
Sbjct: 104 EIGAFNGLANLNTLELFDNR--LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +  + L   K+L+ +    F     L  L L    L+ +P      L +L  L+L  N L
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHL 219

Query: 123 ENI 125
             I
Sbjct: 220 SAI 222

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.2 bits (172), Expect = 2e-15
 Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES-SIAELPSDLFWNST 61
           P   F  +  L+ + +  +   ++ +PS  F  +P L  + LGE   ++ +    F   +
Sbjct: 128 PNGAFVYLSKLKELWLRNNP--IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
           N+  + L     L  +P+       KL +L+L  N L  +    F+ L  L  L +  +Q
Sbjct: 186 NLRYLNL-AMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242

Query: 122 LENITR 127
           ++ I R
Sbjct: 243 IQVIER 248

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.5 bits (160), Expect = 8e-14
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 4/102 (3%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
           +L+E+P G+  N  LLN   L E+ I  +  + F +  ++  + L     + ++    F 
Sbjct: 54  NLREVPDGISTNTRLLN---LHENQIQIIKVNSFKHLRHLEILQL-SRNHIRTIEIGAFN 109

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
               L  LEL  N+L  +P   F  L +L  L L+NN +E+I
Sbjct: 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI 151

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.2 bits (159), Expect = 1e-13
 Identities = 23/120 (19%), Positives = 53/120 (44%), Gaps = 5/120 (4%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
            +  F  +  L+ + ++     L+E+P+     L  L+ + L  + ++ +    F    +
Sbjct: 177 SEGAFEGLSNLRYLNLAMCN--LREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +  + +   + +  +    F + + LV++ L  N L  LP +LF  L  L  ++L +N  
Sbjct: 233 LQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 37  PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN 96
              + VI    ++ E+P  +    TN   + L  ++ +  +    F+  + L  L+L RN
Sbjct: 43  NQFSKVICVRKNLREVPDGIS---TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRN 98

Query: 97  KLKYLPENLFESLKELYTLNLKNNQLENITR 127
            ++ +    F  L  L TL L +N+L  I  
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLTTIPN 129

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.2 bits (185), Expect = 3e-17
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 4/123 (3%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
           P   F  +  L  + +      L+ +  G F  L  L  + LG  +I ++P+        
Sbjct: 163 PSYAFNRVPSLMRLDLG-ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVG 219

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +  + +        +    F     L KL +  +++  +  N F+ L  L  LNL +N L
Sbjct: 220 LEELEM-SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278

Query: 123 ENI 125
            ++
Sbjct: 279 SSL 281

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.2 bits (185), Expect = 4e-17
 Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 4/125 (3%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
               F  +  L  +++  +   L  +PSG F  L  L  + L  + I  +PS  F    +
Sbjct: 115 EVGAFNGLASLNTLELFDNW--LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +  + L   KKL  +    F     L  L L    +K +P      L  L  L +  N  
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHF 230

Query: 123 ENITR 127
             I  
Sbjct: 231 PEIRP 235

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.5 bits (165), Expect = 1e-14
 Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 5/120 (4%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
            +  F  +  L+ + +      +K++P+     L  L  + +  +   E+    F   ++
Sbjct: 188 SEGAFEGLFNLKYLNLGMCN--IKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +  + +  + +++ +    F     LV+L L  N L  LP +LF  L+ L  L+L +N  
Sbjct: 244 LKKLWVM-NSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.3 bits (162), Expect = 5e-14
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 4/102 (3%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
            L E+P G+ +N   LN   L E++I  + +D F +  ++  + L G   +  +    F 
Sbjct: 65  GLSEVPQGIPSNTRYLN---LMENNIQMIQADTFRHLHHLEVLQL-GRNSIRQIEVGAFN 120

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
               L  LEL  N L  +P   FE L +L  L L+NN +E+I
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI 162

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.1 bits (138), Expect = 8e-11
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 37  PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN 96
              + V+     ++E+P  +    +N   + L  +  +  + +  FR    L  L+L RN
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIP---SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRN 109

Query: 97  KLKYLPENLFESLKELYTLNLKNNQLENI 125
            ++ +    F  L  L TL L +N L  I
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLTVI 138

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.9 bits (182), Expect = 5e-17
 Identities = 18/99 (18%), Positives = 43/99 (43%)

Query: 29  PSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL 88
              +F +L  L  + +  +      + +F   +++  + + G+    +    +F + + L
Sbjct: 118 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177

Query: 89  VKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
             L+L + +L+ L    F SL  L  LN+ +N   ++  
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.8 bits (174), Expect = 7e-16
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 4/124 (3%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGE-SSIAELPSDLFWNST 61
              +F  ++ L  + IS+     +   +G+F  L  L  + +   S       D+F    
Sbjct: 118 EFSVFLSLRNLIYLDISHTH--TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
           N+T + L    +L  L  T F     L  L +  N    L    ++ L  L  L+   N 
Sbjct: 176 NLTFLDL-SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234

Query: 122 LENI 125
           +   
Sbjct: 235 IMTS 238

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.4 bits (160), Expect = 6e-14
 Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 3/121 (2%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
              +F  +  L+V+K++ +    +     +F  L  L  + L +  + +L    F + ++
Sbjct: 142 FNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESL-KELYTLNLKNNQ 121
           +  + +  H    SL +  ++    L  L+   N +    +   +     L  LNL  N 
Sbjct: 201 LQVLNM-SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259

Query: 122 L 122
            
Sbjct: 260 F 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 64.6 bits (158), Expect = 1e-13
 Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 3/121 (2%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
           P  +F ++  L  + +S +  S K   S        L  + L  + +  + S+ F     
Sbjct: 44  PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQ 102

Query: 63  ITNIVLTGHKKLTSLPST-LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
           + ++    H  L  +    +F   + L+ L++     +     +F  L  L  L +  N 
Sbjct: 103 LEHLDF-QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161

Query: 122 L 122
            
Sbjct: 162 F 162

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.6 bits (124), Expect = 5e-09
 Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTG-HKKLTSLPSTLF 82
            L  +P+G+ ++   L    L  + +  LP  +F   T +T + L+          S   
Sbjct: 18  GLTSVPTGIPSSATRLE---LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74

Query: 83  RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
                L  L+L  N +  +  N F  L++L  L+ +++ L+ +
Sbjct: 75  FGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM 116

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 40  NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 99
             +      +  +P+ +    ++ T + L  +K L SLP  +F    +L KL L  N L 
Sbjct: 10  TEIRCNSKGLTSVPTGIP---SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 100 Y--LPENLFESLKELYTLNLKNNQLENITR 127
           +             L  L+L  N +  ++ 
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVITMSS 95

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.1 bits (182), Expect = 6e-17
 Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
            +     +  L  + +S++   L  + S  F  +P L  + L  + +  L   LF +   
Sbjct: 56  AEWTPTRLTNLHSLLLSHNH--LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA 113

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLF---ESLKELYTLNLKN 119
           +  ++L  +  +  +    F D  +L KL L +N++   P  L      L +L  L+L +
Sbjct: 114 LEVLLL-YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172

Query: 120 NQLENI 125
           N+L+ +
Sbjct: 173 NKLKKL 178

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 73.7 bits (181), Expect = 9e-17
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 7/124 (5%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGL-FANLPLLNTVILGESSIAELPSDLFWNST 61
           P+ L +    L +       ++L  L +      L  L++++L  + +  + S+ F    
Sbjct: 34  PQSLPSYTALLDL-----SHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
           N+  + L+    L +L   LF D + L  L L  N +  +  N FE + +L  L L  NQ
Sbjct: 89  NLRYLDLS-SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147

Query: 122 LENI 125
           +   
Sbjct: 148 ISRF 151

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.6 bits (152), Expect = 8e-13
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 8/125 (6%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
             + F  +  L+ + +S +   L  L   LF++L  L  ++L  + I  +  + F +   
Sbjct: 80  SSEAFVPVPNLRYLDLSSNH--LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ 137

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLE---LQRNKLKYLPENLFESLKELY--TLNL 117
           +  + L+   +++  P  L +D  KL KL    L  NKLK LP    + L       L L
Sbjct: 138 LQKLYLS-QNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196

Query: 118 KNNQL 122
            NN L
Sbjct: 197 HNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 22/83 (26%)

Query: 65  NIVLTGHKKLTSLPSTL----------------------FRDCKKLVKLELQRNKLKYLP 102
           NI+    ++L ++P +L                            L  L L  N L ++ 
Sbjct: 21  NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80

Query: 103 ENLFESLKELYTLNLKNNQLENI 125
              F  +  L  L+L +N L  +
Sbjct: 81  SEAFVPVPNLRYLDLSSNHLHTL 103

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.1 bits (182), Expect = 6e-17
 Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 2/124 (1%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
             D+F+ +  L  I+I    ++L  +    F NLP L  +++  + I  LP     +S  
Sbjct: 71  EADVFSNLPKLHEIRIE-KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129

Query: 63  ITNIVLTGHKKLTSLPSTLFRDC-KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
              + +  +  + ++    F     + V L L +N ++ +  + F   +        NN 
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189

Query: 122 LENI 125
           LE +
Sbjct: 190 LEEL 193

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.4 bits (175), Expect = 5e-16
 Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 7/126 (5%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE-LPSDLFWNS 60
            P DL      L+          L+ +  G F+    L  + + ++ + E + +D+F N 
Sbjct: 24  IPSDLPRNAIELRF-----VLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL 78

Query: 61  TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK-N 119
             +  I +     L  +    F++   L  L +    +K+LP+       +   L+++ N
Sbjct: 79  PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138

Query: 120 NQLENI 125
             +  I
Sbjct: 139 INIHTI 144

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.7 bits (168), Expect = 6e-15
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP-LLNTVILGESSIAELPSDLFWNS 60
            P           ++ I  +  ++  +    F  L      + L ++ I E+ +  F N 
Sbjct: 119 LPDVHKIHSLQKVLLDIQDN-INIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NG 176

Query: 61  TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
           T +  + L+ +  L  LP+ +F      V L++ R ++  LP    E+LK+L   +  N 
Sbjct: 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

Query: 121 Q 121
           +
Sbjct: 237 K 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 71  HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
             K+T +PS L R+    ++L     KL+ + +  F    +L  + +  N +
Sbjct: 18  ESKVTEIPSDLPRN---AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 71.6 bits (176), Expect = 1e-16
 Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
              +F ++  L+ I  S +K  + ++  G F     +N ++L  + +  +   +F    +
Sbjct: 49  ATGIFKKLPQLRKINFSNNK--ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES 106

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +  ++L    ++T + +  F     +  L L  N++  +    F++L  L TLNL  N  
Sbjct: 107 LKTLML-RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 71.2 bits (175), Expect = 2e-16
 Identities = 22/99 (22%), Positives = 48/99 (48%), Gaps = 1/99 (1%)

Query: 29  PSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL 88
            +G+F  LP L  +    + I ++    F  ++ +  I+LT   +L ++   +F+  + L
Sbjct: 49  ATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT-SNRLENVQHKMFKGLESL 107

Query: 89  VKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
             L L+ N++  +  + F  L  +  L+L +NQ+  +  
Sbjct: 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 3e-09
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 40  NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST-LFRDCKKLVKLELQRNKL 98
            TV      + ++P  +         + L  + + T L +T +F+   +L K+    NK+
Sbjct: 14  TTVDCSNQKLNKIPEHI---PQYTAELRL-NNNEFTVLEATGIFKKLPQLRKINFSNNKI 69

Query: 99  KYLPENLFESLKELYTLNLKNNQLENI 125
             + E  FE    +  + L +N+LEN+
Sbjct: 70  TDIEEGAFEGASGVNEILLTSNRLENV 96

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.0 bits (179), Expect = 2e-16
 Identities = 30/123 (24%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
           P  L    + ++++ ++  +  ++E+ +  FA    +  + +G ++I  LP  +F N   
Sbjct: 67  PAALLDSFRQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +T +VL     L+SLP  +F +  KL  L +  N L+ + ++ F++   L  L L +N+L
Sbjct: 125 LTVLVL-ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183

Query: 123 ENI 125
            ++
Sbjct: 184 THV 186

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.6 bits (157), Expect = 2e-13
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 6/123 (4%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
               FA    +Q + + ++   ++ LP  +F N+PLL  ++L  + ++ LP  +F N+  
Sbjct: 91  DTYAFAYAHTIQKLYMGFNA--IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +T + +  +  L  +    F+    L  L+L  N+L ++  +L  SL      N+  N L
Sbjct: 149 LTTLSM-SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH---ANVSYNLL 204

Query: 123 ENI 125
             +
Sbjct: 205 STL 207

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.2 bits (125), Expect = 4e-09
 Identities = 14/105 (13%), Positives = 35/105 (33%), Gaps = 4/105 (3%)

Query: 25  LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT----GHKKLTSLPST 80
               P     +  L    +  +  I     D+++   +IT          +  +  LP+ 
Sbjct: 10  KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA 69

Query: 81  LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           L    +++  L L   +++ +    F     +  L +  N +  +
Sbjct: 70  LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL 114

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.9 bits (124), Expect = 5e-09
 Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 24/139 (17%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANL----------------PLLNTVILGE 46
             D F     LQ +++S ++  L  +   L  +L                  +  +    
Sbjct: 163 EDDTFQATTSLQNLQLSSNR--LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 220

Query: 47  SSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLF 106
           +SI  +   +      +T + L  H  LT        +   LV+++L  N+L+ +  + F
Sbjct: 221 NSINVVRGPVN---VELTILKLQ-HNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPF 274

Query: 107 ESLKELYTLNLKNNQLENI 125
             ++ L  L + NN+L  +
Sbjct: 275 VKMQRLERLYISNNRLVAL 293

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.9 bits (119), Expect = 3e-08
 Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
           S+  +   +   L +L    L  +++ +       N   +  + L  + +L  +    F 
Sbjct: 222 SINVVRGPVNVELTILK---LQHNNLTDTAW--LLNYPGLVEVDL-SYNELEKIMYHPFV 275

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
             ++L +L +  N+L  L     + +  L  L+L +N L ++ R
Sbjct: 276 KMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVER 318

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.5 bits (110), Expect = 4e-07
 Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 8/119 (6%)

Query: 7   FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
                 L  + +SY++  L+++    F  +  L  + +  + +  L          +  +
Sbjct: 250 LLNYPGLVEVDLSYNE--LEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVL 306

Query: 67  VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
            L  H  L  +         +L  L L  N +  L  +   +LK    L L +N  +  
Sbjct: 307 DL-SHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTHHTLKN---LTLSHNDWDCN 360

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 71.2 bits (175), Expect = 3e-16
 Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 1/107 (0%)

Query: 21  HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80
             + L+ LP+G+F  L  L  ++L E+ +  LP  +F   TN+T + L  H +L SLP  
Sbjct: 93  TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL-AHNQLQSLPKG 151

Query: 81  LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
           +F     L +L+L  N+L+ LPE +F+ L +L  L L  NQL+++  
Sbjct: 152 VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 56.9 bits (138), Expect = 5e-11
 Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 1/101 (0%)

Query: 21  HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80
            ++ L+ LP G+F  L  L  + L  + +  LP  +F   TN+T + L  + +L SLP  
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL-SYNQLQSLPEG 175

Query: 81  LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
           +F    +L  L L +N+LK +P+ +F+ L  L  + L +N 
Sbjct: 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 5/109 (4%)

Query: 14  QVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKK 73
            + +I  +   +K +       LP +  + LG + + ++ +      TN+T ++LTG  +
Sbjct: 42  SIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTG-NQ 96

Query: 74  LTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           L SLP+ +F     L +L L  N+L+ LP+ +F+ L  L  LNL +NQL
Sbjct: 97  LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL 145

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 21  HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80
            K S+ +  +     L  ++ +I   S I  +         N+  + L G  KL  + + 
Sbjct: 27  KKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLAL-GGNKLHDISA- 80

Query: 81  LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123
             ++   L  L L  N+L+ LP  +F+ L  L  L L  NQL+
Sbjct: 81  -LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.5 bits (173), Expect = 1e-15
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 3/124 (2%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL-PSDLFWNST 61
            +D F+ +  L+ + +SY+   L  L S  F  L  L  + L  +    L  + LF + T
Sbjct: 92  EEDSFSSLGSLEHLDLSYNY--LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 149

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
            +  + +      T +    F     L +LE+  + L+       +S++ +  L L   Q
Sbjct: 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209

Query: 122 LENI 125
              +
Sbjct: 210 HILL 213

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 66.3 bits (162), Expect = 3e-14
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 4/102 (3%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
           SL  +PSGL   +  L+   L  + I  + +       N+  +VL     + ++    F 
Sbjct: 42  SLNSIPSGLTEAVKSLD---LSNNRITYISNSDLQRCVNLQALVL-TSNGINTIEEDSFS 97

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
               L  L+L  N L  L  + F+ L  L  LNL  N  + +
Sbjct: 98  SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL 139

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.5 bits (147), Expect = 4e-12
 Identities = 20/125 (16%), Positives = 44/125 (35%), Gaps = 5/125 (4%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKEL-PSGLFANLPLLNTVILGE-SSIAELPSDLFWNS 60
               F  +  L  + +  +    K L  + LF++L  L  + +G   +  ++    F   
Sbjct: 116 SSSWFKPLSSLTFLNLLGNP--YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173

Query: 61  TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
           T +  + +     L S      +  + +  L L   +   L E   +    +  L L++ 
Sbjct: 174 TFLEELEI-DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232

Query: 121 QLENI 125
            L+  
Sbjct: 233 DLDTF 237

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.4 bits (144), Expect = 1e-11
 Identities = 18/130 (13%), Positives = 46/130 (35%), Gaps = 10/130 (7%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
            +  FA + +L+ ++I      L+        ++  ++ +IL       L       +++
Sbjct: 166 QRKDFAGLTFLEELEIDA--SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223

Query: 63  ITNIVLTG----HKKLTSLPSTLFRDCKKLV---KLELQRNKLKYLPENLFESLKELYTL 115
           +  + L          + L +       K      +++    L  + + L   +  L  L
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLEL 282

Query: 116 NLKNNQLENI 125
               NQL+++
Sbjct: 283 EFSRNQLKSV 292

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.0 bits (143), Expect = 2e-11
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 7/129 (5%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
              LF+ +  LQ++++    D+  ++    FA L  L  + +  S +         +  N
Sbjct: 141 ETSLFSHLTKLQILRVGNM-DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN 199

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY-----LPENLFESLKELYTLNL 117
           +++++L   K+   L          +  LEL+   L       L      SL + +T   
Sbjct: 200 VSHLIL-HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258

Query: 118 KNNQLENIT 126
                E++ 
Sbjct: 259 VKITDESLF 267

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.4 bits (139), Expect = 5e-11
 Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 12/126 (9%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGE--------SSIAELPS 54
                  ++ +  + +   +     L          +  + L +        S ++   +
Sbjct: 190 EPKSLKSIQNVSHLILHMKQ--HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247

Query: 55  DLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYT 114
           +         N+ +T  + L  +   L      L++LE  RN+LK +P+ +F+ L  L  
Sbjct: 248 NSLIKKFTFRNVKIT-DESLFQVMK-LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305

Query: 115 LNLKNN 120
           + L  N
Sbjct: 306 IWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 36  LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQR 95
                       S+  +PS L      + ++ L  + ++T + ++  + C  L  L L  
Sbjct: 30  CDRNGICKGSSGSLNSIPSGLT---EAVKSLDL-SNNRITYISNSDLQRCVNLQALVLTS 85

Query: 96  NKLKYLPENLFESLKELYTLNLKNNQLENI 125
           N +  + E+ F SL  L  L+L  N L N+
Sbjct: 86  NGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 68.5 bits (168), Expect = 2e-15
 Identities = 37/107 (34%), Positives = 62/107 (57%), Gaps = 1/107 (0%)

Query: 21  HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80
             +SLK LP+G+F  L  L  + LG + +  LP+ +F   T++T + L    +L SLP+ 
Sbjct: 36  ETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL-STNQLQSLPNG 94

Query: 81  LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
           +F    +L +L L  N+L+ LP+ +F+ L +L  L L  NQL+++  
Sbjct: 95  VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 59.3 bits (144), Expect = 4e-12
 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
           P  +F E+  L  + +  +K  L+ LP+G+F  L  L  + L  + +  LP+ +F   T 
Sbjct: 44  PNGVFDELTSLTQLYLGGNK--LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
           +  + L    +L SLP  +F    +L  L L +N+LK +P+ +F+ L  L  + L +N 
Sbjct: 102 LKELAL-NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 72  KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +  TS+P+ +      L   +L+ N LK LP  +F+ L  L  L L  N+L
Sbjct: 17  QGRTSVPTGIPAQTTYL---DLETNSLKSLPNGVFDELTSLTQLYLGGNKL 64

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 68.5 bits (168), Expect = 5e-15
 Identities = 24/123 (19%), Positives = 54/123 (43%), Gaps = 4/123 (3%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
            K +F  +  + V+++  +      + +G F  +  L+ + + +++I  +P  L     +
Sbjct: 137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PS 193

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +T + L    K+T + +   +    L KL L  N +  +      +   L  L+L NN+L
Sbjct: 194 LTELHL-DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252

Query: 123 ENI 125
             +
Sbjct: 253 VKV 255

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 65.4 bits (160), Expect = 7e-14
 Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 7/127 (5%)

Query: 1   MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 60
                 F  MK L  I+I+     +  +P GL  +L  L+   L  + I ++ +      
Sbjct: 161 GIENGAFQGMKKLSYIRIADTN--ITTIPQGLPPSLTELH---LDGNKITKVDAASLKGL 215

Query: 61  TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
            N+  + L     ++++ +    +   L +L L  NKL  +P  L    K +  + L NN
Sbjct: 216 NNLAKLGL-SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA-DHKYIQVVYLHNN 273

Query: 121 QLENITR 127
            +  I  
Sbjct: 274 NISAIGS 280

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.9 bits (156), Expect = 2e-13
 Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
            PKDL  +   L +       + + E+  G F NL  L+T+IL  + I+++    F    
Sbjct: 46  VPKDLPPDTALLDL-----QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 100

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
            +  + L    +L  LP  + +    L +L +  N++  + +++F  L ++  + L  N 
Sbjct: 101 KLERLYL-SKNQLKELPEKMPK---TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156

Query: 122 LENI 125
           L++ 
Sbjct: 157 LKSS 160

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.1 bits (154), Expect = 5e-13
 Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 7/104 (6%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
            L+++P  L  +  LL+   L  + I E+    F N  N+  ++L  + K++ +    F 
Sbjct: 42  GLEKVPKDLPPDTALLD---LQNNKITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFA 97

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
              KL +L L +N+LK LPE + ++L+EL    +  N++  + +
Sbjct: 98  PLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVRK 138

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.0 bits (146), Expect = 5e-12
 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 6/103 (5%)

Query: 25  LKELPSGLFANLPLLNTVILGESSIAE--LPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82
           + ++   +F  L  +  V LG + +    + +  F     ++ I +     +T++P  L 
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI-ADTNITTIPQGLP 191

Query: 83  RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
                L +L L  NK+  +     + L  L  L L  N +  +
Sbjct: 192 P---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 19/126 (15%), Positives = 46/126 (36%), Gaps = 12/126 (9%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
                  +  L  + +S++   +  + +G  AN P L  + L  + + ++P     +   
Sbjct: 208 DAASLKGLNNLAKLGLSFNS--ISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKY 264

Query: 63  ITNIVLTGHKKLTSLPSTLFR------DCKKLVKLELQRNKLKY--LPENLFESLKELYT 114
           I  + L  +  ++++ S  F              + L  N ++Y  +  + F  +     
Sbjct: 265 IQVVYL-HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323

Query: 115 LNLKNN 120
           + L N 
Sbjct: 324 VQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 39  LNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKL 98
           L  V   +  + ++P DL     +   + L  + K+T +    F++ K L  L L  NK+
Sbjct: 33  LRVVQCSDLGLEKVPKDLP---PDTALLDLQ-NNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 99  KYLPENLFESLKELYTLNLKNNQLENI 125
             +    F  L +L  L L  NQL+ +
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKEL 115

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 16/124 (12%), Positives = 47/124 (37%), Gaps = 3/124 (2%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
               F+ +  L  + ++  +  +  +    F +   L+T++L  + +  +          
Sbjct: 49  QNTTFSRLINLTFLDLTRCQ--IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           + ++       ++S+      + K L  L L  N +  +        ++L  L+ +NN +
Sbjct: 107 LKHLFF-IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165

Query: 123 ENIT 126
             ++
Sbjct: 166 HYLS 169

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.8 bits (161), Expect = 6e-14
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 1/101 (0%)

Query: 25  LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD 84
           L  + +  F+ L  L  + L    I  +  D F +   +  +VLT    L  +  T    
Sbjct: 45  LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT-ANPLIFMAETALSG 103

Query: 85  CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
            K L  L   +  +  +      + K L +L L +N + +I
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 5/127 (3%)

Query: 1   MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 60
              +D F     L  + ++   + L  +     +    L  +   ++ I+ +      N 
Sbjct: 71  WIHEDTFQSQHRLDTLVLTA--NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128

Query: 61  TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKEL--YTLNLK 118
             + ++ L G   ++S+        +KL  L+ Q N + YL +    SL++    +LNL 
Sbjct: 129 KTLESLYL-GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187

Query: 119 NNQLENI 125
            N +  I
Sbjct: 188 GNDIAGI 194

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 23/124 (18%), Positives = 45/124 (36%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
                  ++ L+ + +S+      +  +    NL  L ++ L  +    L ++ F     
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +  + L   +       + F++   L  L L  + L    E LF+ L  L  LNL+ N  
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461

Query: 123 ENIT 126
               
Sbjct: 462 PKGN 465

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 4e-11
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 5/127 (3%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
             + F     LQ + ++     L ELPSGL   L  L  ++L  +    L      N  +
Sbjct: 270 SSNTFHCFSGLQELDLTA--THLSELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPS 326

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN--LFESLKELYTLNLKNN 120
           +T++ + G+ K   L +    + + L +L+L  + ++          +L  L +LNL  N
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386

Query: 121 QLENITR 127
           +  ++  
Sbjct: 387 EPLSLKT 393

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.3 bits (139), Expect = 6e-11
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 3/123 (2%)

Query: 2   FPKDLFAEMKYLQVIKISY-HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 60
             + LF  +  LQ + +   H        +     L  L  ++L    ++ +    F + 
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499

Query: 61  TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
             + ++ L  H +LTS         K +  L L  N +  +  +L   L +  T+NL+ N
Sbjct: 500 KMMNHVDL-SHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQN 557

Query: 121 QLE 123
            L+
Sbjct: 558 PLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 7/126 (5%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGE---SSIAELPSDLFWN 59
            +  F  +  L+V+ +S+    L      LF  LP L  + L            ++    
Sbjct: 417 AQSPFQNLHLLKVLNLSH--SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 60  STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
              +  +VL     L+S+    F   K +  ++L  N+L          LK +Y LNL +
Sbjct: 475 LGRLEILVL-SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLAS 532

Query: 120 NQLENI 125
           N +  I
Sbjct: 533 NHISII 538

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 5/127 (3%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPS-GLFANLPLLNTVILGESSIAELPSDLFWNS 60
              + F E   L+++ +++    LK   +   F NL LL  + L  S +      LF   
Sbjct: 391 LKTEAFKECPQLELLDLAF--TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448

Query: 61  TNITNIVLTG--HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 118
             + ++ L G    K     +   +   +L  L L    L  + ++ F SLK +  ++L 
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508

Query: 119 NNQLENI 125
           +N+L + 
Sbjct: 509 HNRLTSS 515

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.6 bits (132), Expect = 5e-10
 Identities = 28/129 (21%), Positives = 44/129 (34%), Gaps = 7/129 (5%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD-LFWNS 60
                   + +LQ + +SY++     L +  F   P L  + L  + +    +   F N 
Sbjct: 367 CCNLQLRNLSHLQSLNLSYNE--PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424

Query: 61  TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE---NLFESLKELYTLNL 117
             +  + L  H  L      LF     L  L LQ N          N  ++L  L  L L
Sbjct: 425 HLLKVLNL-SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

Query: 118 KNNQLENIT 126
               L +I 
Sbjct: 484 SFCDLSSID 492

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 4e-09
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 2/114 (1%)

Query: 13  LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT-GH 71
            Q +     ++ L        + +  L      +    ++   +F     ++   +    
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263

Query: 72  KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
               ++ S  F     L +L+L    L  LP  L   L  L  L L  N+ EN+
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV-GLSTLKKLVLSANKFENL 316

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 4e-08
 Identities = 14/127 (11%), Positives = 44/127 (34%), Gaps = 4/127 (3%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS- 60
             K+  + ++    + ++ + + +  +  G F +    +    G  ++  +   L  ++ 
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI 227

Query: 61  TNITNIVLTGHKKLTSLPSTLFRDCKK--LVKLELQRNKLKYLPENLFESLKELYTLNLK 118
            ++             +   +F    +  +  + LQ++    +  N F     L  L+L 
Sbjct: 228 QSLWLGTF-EDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286

Query: 119 NNQLENI 125
              L  +
Sbjct: 287 ATHLSEL 293

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 6e-07
 Identities = 14/128 (10%), Positives = 37/128 (28%), Gaps = 6/128 (4%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
                   K L+ + +  +   +  +          L  +    ++I  L  +   +   
Sbjct: 121 DFIPLHNQKTLESLYLGSNH--ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178

Query: 63  ITNIVL-TGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY--LPENLFESLKELYTLNLKN 119
            TN+ L      +  +    F D      L     +            +++ L+    ++
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED 237

Query: 120 NQLENITR 127
              E+I+ 
Sbjct: 238 MDDEDISP 245

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 71  HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           +  L  +P TL         LE   N L  +    F  L  L  L+L   Q+  I
Sbjct: 21  NLGLNEIPGTLPNS---TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.5 bits (165), Expect = 2e-14
 Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 1/125 (0%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
             ++ FA +    V  +      +  L S +F  L  L  + L  + I ++  + F+   
Sbjct: 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD 314

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
           N+  + L+ +  L  L S+ F    K+  ++LQ+N +  + +  F+ L++L TL+L++N 
Sbjct: 315 NLQVLNLS-YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373

Query: 122 LENIT 126
           L  I 
Sbjct: 374 LTTIH 378

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.0 bits (161), Expect = 7e-14
 Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 3/127 (2%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
               F  ++ LQ++++      L  +    F NLP L  + LG S I  L  D F    +
Sbjct: 40  TASSFPFLEQLQLLELGSQYTPL-TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98

Query: 63  ITNIVLTG-HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN-LFESLKELYTLNLKNN 120
           +  + L         L    FR+ K L +L+L +N+++ L  +  F  L  L +++  +N
Sbjct: 99  LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158

Query: 121 QLENITR 127
           Q+  +  
Sbjct: 159 QIFLVCE 165

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.0 bits (148), Expect = 3e-12
 Identities = 18/97 (18%), Positives = 38/97 (39%)

Query: 30  SGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV 89
           + +   L     ++L  + I  + +  F     +  + L       ++    FR+   L 
Sbjct: 17  TQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR 76

Query: 90  KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
            L+L  +K+ +L  + F+ L  L+ L L    L +  
Sbjct: 77  ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.2 bits (146), Expect = 7e-12
 Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 5/123 (4%)

Query: 7   FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLN--TVILGESSIAELPSDLFWNSTNIT 64
                ++      +H   +K+     FA L   +   + L    +  L S +F    ++ 
Sbjct: 236 LILAHHIMGAGFGFHN--IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK 293

Query: 65  NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124
            + L  + K+  +    F     L  L L  N L  L  + F  L ++  ++L+ N +  
Sbjct: 294 VLNLA-YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI 352

Query: 125 ITR 127
           I  
Sbjct: 353 IQD 355

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.1 bits (138), Expect = 7e-11
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 3/105 (2%)

Query: 23  DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWN--STNITNIVLTGHKKLTSLPST 80
           +++ +  +        +     G  +I +   + F     +++ ++ L+ H  + SL S 
Sbjct: 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS-HGFVFSLNSR 284

Query: 81  LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           +F   K L  L L  NK+  + +  F  L  L  LNL  N L  +
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.0 bits (122), Expect = 9e-09
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 6/109 (5%)

Query: 24  SLKELPSGLF-ANLPLLNTVILGESSIAELPSD-LFWNSTNITNIVLTG----HKKLTSL 77
            L+ L    F   +P L  +IL ++  +    D     + ++  + L          T L
Sbjct: 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471

Query: 78  PSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
              +F     L  L L  N L  LP  +F  L  L  L+L +N+L  ++
Sbjct: 472 CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 6e-08
 Identities = 31/145 (21%), Positives = 51/145 (35%), Gaps = 25/145 (17%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
              + F  +  LQV+ +SY+   L EL S  F  LP +  + L ++ IA +    F    
Sbjct: 305 IADEAFYGLDNLQVLNLSYNL--LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362

Query: 62  NITNIVLT------------------GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE 103
            +  + L                      KL +LP            + L  N+L+ L  
Sbjct: 363 KLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDI 418

Query: 104 NLF-ESLKELYTLNLKNNQLENITR 127
             F   +  L  L L  N+  + + 
Sbjct: 419 LYFLLRVPHLQILILNQNRFSSCSG 443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 11/125 (8%)

Query: 7   FAEMKYLQVIKISYHKDSLKELP-SGLFANLPLLNTVILGESSI-----AELPSDLFWNS 60
              + +LQ++ ++ ++            +  P L  + LGE+ +      EL  D+F   
Sbjct: 422 LLRVPHLQILILNQNR--FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479

Query: 61  TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
           +++  + L  H  L SLP  +F     L  L L  N+L  L  N   +   L  L++  N
Sbjct: 480 SHLQVLYLN-HNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN--LEILDISRN 536

Query: 121 QLENI 125
           QL   
Sbjct: 537 QLLAP 541

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 26/126 (20%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
              D F  + +L  +++ +   S   L  G F NL  L  + L ++ I  L         
Sbjct: 88  LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-------- 139

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESL--KELYTLNLKN 119
                               F     L  ++   N++  + E+  E L  K L   +L  
Sbjct: 140 ----------------LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183

Query: 120 NQLENI 125
           N L + 
Sbjct: 184 NSLYSR 189

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.0 bits (164), Expect = 2e-14
 Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
            P +L    K L +       + L+ L S  F + P L  + L    I  +    + + +
Sbjct: 22  IPDNLPFSTKNLDL-----SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
           +++ ++LT    + SL    F     L KL      L  L       LK L  LN+ +N 
Sbjct: 77  HLSTLILT-GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 122 LENI 125
           +++ 
Sbjct: 136 IQSF 139

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.1 bits (159), Expect = 1e-13
 Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
               F     LQV+ +S     ++ +  G + +L  L+T+IL  + I  L    F   ++
Sbjct: 44  GSYSFFSFPELQVLDLSR--CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQ 121
           +  +V      L SL +      K L +L +  N ++       F +L  L  L+L +N+
Sbjct: 102 LQKLVA-VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 122 LENITR 127
           +++I  
Sbjct: 161 IQSIYC 166

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.7 bits (150), Expect = 2e-12
 Identities = 22/128 (17%), Positives = 53/128 (41%), Gaps = 8/128 (6%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
               +  + +L  + ++ +   ++ L  G F+ L  L  ++  E+++A L +    +   
Sbjct: 68  EDGAYQSLSHLSTLILTGNP--IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 63  ITNIVLTGHKKLTSLP-STLFRDCKKLVKLELQRNKLKYLPENLFESLKEL----YTLNL 117
           +  + +  H  + S      F +   L  L+L  NK++ +       L ++     +L+L
Sbjct: 126 LKELNV-AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 118 KNNQLENI 125
             N +  I
Sbjct: 185 SLNPMNFI 192

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 24/120 (20%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 7   FAEMKYLQVIKISYHKDSLKELPS-GLFANLPLLNTVILGESSIAELPSDLFWNSTNITN 65
           F  ++ L+ +   +    LK++    +F +L  L  + +  +      + +F   +++  
Sbjct: 392 FLGLEQLEHLDFQHSN--LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 66  IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           + + G+    +    +F + + L  L+L + +L+ L    F SL  L  LN+ +NQL+++
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.4 bits (139), Expect = 5e-11
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 4/123 (3%)

Query: 1   MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE-LPSDLFWN 59
           M    +F  ++ L  + IS+     +   +G+F  L  L  + +  +S  E    D+F  
Sbjct: 411 MSEFSVFLSLRNLIYLDISH--THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 60  STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
             N+T + L    +L  L  T F     L  L +  N+LK +P+ +F+ L  L  + L  
Sbjct: 469 LRNLTFLDL-SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527

Query: 120 NQL 122
           N  
Sbjct: 528 NPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.6 bits (137), Expect = 9e-11
 Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 3/121 (2%)

Query: 7   FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
             ++  L+ + +S +  S K   S        L  + L  + +  + S+ F     + ++
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHL 401

Query: 67  VLTGHKKLTSLPST-LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
                  L  +    +F   + L+ L++     +     +F  L  L  L +  N  +  
Sbjct: 402 DFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 126 T 126
            
Sbjct: 461 F 461

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 40  NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 99
            T    E +  ++P +L     +  N+ L+    L  L S  F    +L  L+L R +++
Sbjct: 10  ITYQCMELNFYKIPDNLP---FSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 100 YLPENLFESLKELYTLNLKNNQLENI 125
            + +  ++SL  L TL L  N ++++
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSL 91

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.6 bits (116), Expect = 7e-08
 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 9/126 (7%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP-SDLFWNS 60
                F+ +  LQ +        L  L +    +L  L  + +  + I      + F N 
Sbjct: 91  LALGAFSGLSSLQKLVAVETN--LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 61  TNITNIVLTGHKKLTSLPSTLFRDCKKL----VKLELQRNKLKYLPENLFESLKELYTLN 116
           TN+ ++ L    K+ S+  T  R   ++    + L+L  N + ++    F+ ++ L+ L 
Sbjct: 149 TNLEHLDL-SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLT 206

Query: 117 LKNNQL 122
           L+NN  
Sbjct: 207 LRNNFD 212

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.1 bits (94), Expect = 6e-05
 Identities = 19/131 (14%), Positives = 45/131 (34%), Gaps = 8/131 (6%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSG-LFANLPLLNTVILGESSIAELPSDLFWNS 60
                   +K L+ + ++++   ++       F+NL  L  + L  + I  +        
Sbjct: 115 LENFPIGHLKTLKELNVAHNL--IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 61  TNITNIVLT---GHKKLTSLPSTLFRDCKKLVKLELQRNKLKY-LPENLFESLKELYTLN 116
             +  + L+       +  +    F++  +L KL L+ N     + +   + L  L    
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 117 LKNNQLENITR 127
           L   +  N   
Sbjct: 232 LVLGEFRNEGN 242

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 3   PKDLFAEMKYLQVIKISYHKDS----LKELPSGLFANLPLLNTVILGESSI---AELPSD 55
            K     +  L+V ++   +      L++        L  L       + +    +   D
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276

Query: 56  LFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTL 115
           LF   TN+++  L     +  +    +        LEL   K    P    +SLK L   
Sbjct: 277 LFNCLTNVSSFSLV-SVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRLT-- 331

Query: 116 NLKNNQLENI 125
              +N+  N 
Sbjct: 332 -FTSNKGGNA 340

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.1 bits (164), Expect = 3e-14
 Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 3/124 (2%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD-LFWNST 61
             D F  +  L+ + +S   + L  L S  F  L  L  + L  +    L    LF N T
Sbjct: 66  EGDAFYSLGSLEHLDLSD--NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
           N+  + +   +  + +    F     L +LE++   L+       +S+++++ L L  ++
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 122 LENI 125
              +
Sbjct: 184 SAFL 187

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 8e-10
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 4/103 (3%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
           S   +PSGL A +  L+   L  + I  +         N+  ++L    ++ ++    F 
Sbjct: 16  SFTSIPSGLTAAMKSLD---LSFNKITYIGHGDLRACANLQVLIL-KSSRINTIEGDAFY 71

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
               L  L+L  N L  L  + F  L  L  LNL  N  + + 
Sbjct: 72  SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 5/126 (3%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELP-SGLFANLPLLNTVILGES-SIAELPSDLFWN 59
                F  +  L+ + +  +    + L  + LF NL  L T+ +G   + +E+    F  
Sbjct: 89  LSSSWFGPLSSLKYLNLMGNP--YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 60  STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
            T++  + +     L +  S   +  + +  L L  ++  +L E   + L  +  L L++
Sbjct: 147 LTSLNELEI-KALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 120 NQLENI 125
             L   
Sbjct: 206 TNLARF 211

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.3 bits (123), Expect = 9e-09
 Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 1/104 (0%)

Query: 23  DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82
             + EL    F +  L        S    +       +  I  + +     L    ST++
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP-QFYLFYDLSTVY 306

Query: 83  RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
              +K+ ++ ++ +K+  +P +  + LK L  L+L  N +    
Sbjct: 307 SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 35  NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQ 94
           +            S   +PS L      + ++ L+   K+T +     R C  L  L L+
Sbjct: 3   SCDASGVCDGRSRSFTSIPSGLT---AAMKSLDLS-FNKITYIGHGDLRACANLQVLILK 58

Query: 95  RNKLKYLPENLFESLKELYTLNLKNNQLENI 125
            +++  +  + F SL  L  L+L +N L ++
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 2/123 (1%)

Query: 5   DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNIT 64
            LF  +  LQ ++I  + ++  E+    FA L  LN + +   S+    S    +  +I 
Sbjct: 117 SLFPNLTNLQTLRIG-NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175

Query: 65  NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124
           ++ L    +   L          +  LEL+   L     +     +    +     +   
Sbjct: 176 HLTL-HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234

Query: 125 ITR 127
           +T 
Sbjct: 235 LTD 237

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 1e-07
 Identities = 20/145 (13%), Positives = 54/145 (37%), Gaps = 22/145 (15%)

Query: 1   MFPKDLFAEMKYLQVIKISYHK-DSLKELPSGLFANLPLLNTVILGESSIAELP--SDLF 57
           + P      +K L+ + +S +         S      P L T++L ++ +  +    ++ 
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383

Query: 58  WNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY---- 113
               N+T++ +        +P +  +  +K+  L L    ++ +   + ++L+ L     
Sbjct: 384 LTLKNLTSLDI-SRNTFHPMPDS-CQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNN 441

Query: 114 -------------TLNLKNNQLENI 125
                         L +  N+L+ +
Sbjct: 442 NLDSFSLFLPRLQELYISRNKLKTL 466

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 22/131 (16%), Positives = 51/131 (38%), Gaps = 9/131 (6%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGE---SSIAELPSDLFW 58
               +++ ++ ++ I +   K  +  +P     +L  L  + L E          S    
Sbjct: 301 DLSTVYSLLEKVKRITVENSK--VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358

Query: 59  NSTNITNIVLTGHKKLTSLPST--LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN 116
              ++  +VL     L S+  T  +    K L  L++ RN    +P++  +  +++  LN
Sbjct: 359 AWPSLQTLVL-SQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLN 416

Query: 117 LKNNQLENITR 127
           L +  +  +  
Sbjct: 417 LSSTGIRVVKT 427

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 18/98 (18%), Positives = 44/98 (44%), Gaps = 10/98 (10%)

Query: 25  LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD 84
           ++ + + +   L +L+   +  +++      L      +  + ++   KL +LP      
Sbjct: 422 IRVVKTCIPQTLEVLD---VSNNNLDSFSLFL----PRLQELYIS-RNKLKTLPDASL-- 471

Query: 85  CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
              L+ +++ RN+LK +P+ +F+ L  L  + L  N  
Sbjct: 472 FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 15/112 (13%), Positives = 38/112 (33%), Gaps = 4/112 (3%)

Query: 19  SYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP 78
            ++      +          +  + + +  +    S ++     +  I +  + K+  +P
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE-NSKVFLVP 326

Query: 79  STLFRDCKKLVKLELQRNKLKYLP---ENLFESLKELYTLNLKNNQLENITR 127
            +  +  K L  L+L  N +            +   L TL L  N L ++ +
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 4e-06
 Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 13/121 (10%)

Query: 5   DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNIT 64
           ++   +K L  + IS   ++   +P         +  + L  + I  + + +      + 
Sbjct: 381 EILLTLKNLTSLDISR--NTFHPMPDS-CQWPEKMRFLNLSSTGIRVVKTCIP---QTLE 434

Query: 65  NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124
            + ++ +  L S    L     +L +L + RNKLK LP+        L  + +  NQL++
Sbjct: 435 VLDVS-NNNLDSFSLFL----PRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKS 487

Query: 125 I 125
           +
Sbjct: 488 V 488

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 9/143 (6%), Positives = 43/143 (30%), Gaps = 19/143 (13%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
             +     +  ++ +++     +L            + + +       + L  + F    
Sbjct: 187 LLEIFADILSSVRYLELRDT--NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244

Query: 62  NITNIVLT-----------------GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN 104
            +   +L                     +   +      +   + +L + +  L Y    
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304

Query: 105 LFESLKELYTLNLKNNQLENITR 127
           ++  L+++  + ++N+++  +  
Sbjct: 305 VYSLLEKVKRITVENSKVFLVPC 327

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 63.4 bits (155), Expect = 8e-14
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 4/104 (3%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
            L  +P+G+ ++   L    L  + +  LP  +F   T +T + L    ++ SLP  +F 
Sbjct: 18  GLTSVPTGIPSSATRLE---LESNKLQSLPHGVFDKLTQLTKLSL-SQNQIQSLPDGVFD 73

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
              KL  L L  NKL+ LP  +F+ L +L  L L  NQL+++  
Sbjct: 74  KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD 117

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 58.4 bits (142), Expect = 6e-12
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 1/101 (0%)

Query: 21  HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80
             + L+ LP G+F  L  L  + L ++ I  LP  +F   T +T + L    KL SLP+ 
Sbjct: 36  ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL-HENKLQSLPNG 94

Query: 81  LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
           +F    +L +L L  N+LK +P+ +F+ L  L  + L  N 
Sbjct: 95  VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
            P   F     L  + + ++   + +L   L   LP+L  + L  + +++L    F   T
Sbjct: 40  LPAANFTRYSQLTSLDVGFNT--ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
           N+T + L  +  +  + +  F   K L+ L+L  N L          L+ L  L L NN+
Sbjct: 98  NLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 122 LENI 125
           ++ +
Sbjct: 157 IQAL 160

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.3 bits (157), Expect = 2e-13
 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 1/102 (0%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
            L+ LP+  F     L ++ +G ++I++L  +L      +  + L  H +L+ L    F 
Sbjct: 36  QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ-HNELSQLSDKTFA 94

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
            C  L +L L  N ++ +  N F   K L TL+L +N L + 
Sbjct: 95  FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPL--LNTVILGESSIAELPSDLFWN 59
              ++F  +  L+ + +S    SL+ L +  F +L    L+ + L ++ I+++ SD F  
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403

Query: 60  STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
             ++  + L  ++    L    +R  + + ++ L  NK   L  N F  +  L  L L+ 
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463

Query: 120 NQLENITR 127
             L+N+  
Sbjct: 464 VALKNVDS 471

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 12/135 (8%)

Query: 2   FPKDLFAEMKY--LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWN 59
                F  +K+  L ++ +SY+   L  + +  FA LP L    L  ++I  L S     
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNN--LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG 294

Query: 60  STNITNIVLTG--------HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKE 111
             N+  + L             L  +    F+  K L  L ++ N +  +  N+F  L  
Sbjct: 295 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN 354

Query: 112 LYTLNLKNNQLENIT 126
           L  L+L N+     T
Sbjct: 355 LKYLSLSNSFTSLRT 369

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 5/122 (4%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
               FA    L  + +  +   ++++ +  F     L T+ L  + ++           N
Sbjct: 89  SDKTFAFCTNLTELHLMSNS--IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCK--KLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
           +  ++L  + K+ +L S          L KLEL  N++K      F ++  L+ L L N 
Sbjct: 147 LQELLL-SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205

Query: 121 QL 122
           QL
Sbjct: 206 QL 207

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 13/135 (9%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS--DLFWN 59
                +  ++ +  I +SY+K    +L    FA +P L  ++L   ++  + S    F  
Sbjct: 421 LTGQEWRGLENIFEIYLSYNK--YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478

Query: 60  STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN--------LFESLKE 111
             N+T + L  +  + ++   +    +KL  L+LQ N L  L ++          + L  
Sbjct: 479 LRNLTILDL-SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537

Query: 112 LYTLNLKNNQLENIT 126
           L+ LNL++N  + I 
Sbjct: 538 LHILNLESNGFDEIP 552

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 26/129 (20%), Positives = 59/129 (45%), Gaps = 8/129 (6%)

Query: 2   FPKDLFAEMKYLQVIKISY------HKDSLKELPSGLFANLPLLNTVILGESSIAELPSD 55
              D+   ++ L+++ + +       K +    P      L  L+ + L  +   E+P +
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554

Query: 56  LFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFE-SLKELYT 114
           +F +   +  I L G   L +LP+++F +   L  L LQ+N +  + + +F  + + L  
Sbjct: 555 VFKDLFELKIIDL-GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 613

Query: 115 LNLKNNQLE 123
           L+++ N  +
Sbjct: 614 LDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 4/102 (3%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
            L ++P  L  N+ +LN   L  + +  LP+  F   + +T++ +  +  ++ L   L +
Sbjct: 15  KLTQVPDDLPTNITVLN---LTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQ 70

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
               L  L LQ N+L  L +  F     L  L+L +N ++ I
Sbjct: 71  KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 112

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 24/129 (18%), Positives = 55/129 (42%), Gaps = 11/129 (8%)

Query: 5   DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD--------L 56
             F  ++ L ++ +S +   +  +   +   L  L  + L  +++A L            
Sbjct: 474 SPFQPLRNLTILDLSNNN--IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF 531

Query: 57  FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN 116
               +++  + L        +P  +F+D  +L  ++L  N L  LP ++F +   L +LN
Sbjct: 532 LKGLSHLHILNL-ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590

Query: 117 LKNNQLENI 125
           L+ N + ++
Sbjct: 591 LQKNLITSV 599

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 4e-10
 Identities = 27/128 (21%), Positives = 62/128 (48%), Gaps = 4/128 (3%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
              D F+ + +L+V+ +  ++   +EL    +  L  +  + L  +   +L  + F    
Sbjct: 396 IESDAFSWLGHLEVLDLGLNEIG-QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454

Query: 62  NITNIVLTG--HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
           ++  ++L     K + S PS  F+  + L  L+L  N +  + +++ E L++L  L+L++
Sbjct: 455 SLQRLMLRRVALKNVDSSPSP-FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513

Query: 120 NQLENITR 127
           N L  + +
Sbjct: 514 NNLARLWK 521

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 39  LNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKL 98
                     + ++P DL    TNIT + LT H +L  LP+  F    +L  L++  N +
Sbjct: 6   HEVADCSHLKLTQVPDDLP---TNITVLNLT-HNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 99  KYLPENLFESLKELYTLNLKNNQLENI 125
             L   L + L  L  LNL++N+L  +
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQL 88

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 6/127 (4%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
             + F + K L  + +S+  + L     G    L  L  ++L  + I  L S+      N
Sbjct: 113 KNNPFVKQKNLITLDLSH--NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170

Query: 63  ITNIVLT-GHKKLTSLPSTLFRDCKKLVKLELQRNKLKY-LPENLFE--SLKELYTLNLK 118
            +   L     ++       F    +L  L L   +L   L E L    +   +  L+L 
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 119 NNQLENI 125
           N+QL   
Sbjct: 231 NSQLSTT 237

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 12/136 (8%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPL--LNTVILGESSIAELPSDLFWNS 60
            + L  E+    +  +S     L    +  F  L    L  + L  +++  + +D F   
Sbjct: 212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL 271

Query: 61  TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRN---------KLKYLPENLFESLKE 111
             +    L  +  +  L S        +  L L+R+          L  + +  F+ LK 
Sbjct: 272 PQLEYFFL-EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330

Query: 112 LYTLNLKNNQLENITR 127
           L  LN+++N +  I  
Sbjct: 331 LEHLNMEDNDIPGIKS 346

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 1/102 (0%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
            LK L S  F+N   L  + L    I  +    +    +++N++LTG+  + S     F 
Sbjct: 43  PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFS 101

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
               L  L     KL  L       L  L  LN+ +N + + 
Sbjct: 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.0 bits (151), Expect = 1e-12
 Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 4/124 (3%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
               F+    LQ + +S     ++ +    +  L  L+ +IL  + I       F   T+
Sbjct: 48  KSYSFSNFSELQWLDLSR--CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN-LFESLKELYTLNLKNNQ 121
           + N+V     KL SL S        L KL +  N +        F +L  L  ++L  N 
Sbjct: 106 LENLVA-VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164

Query: 122 LENI 125
           ++ I
Sbjct: 165 IQTI 168

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.7 bits (145), Expect = 9e-12
 Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 7   FAEMKYLQVIKISYHKDSLKELPS-GLFANLPLLNTVILGESSIAELPSDLFWNSTNITN 65
           F  ++ LQ +   +    LK +     F +L  L  + +  ++       +F   T++  
Sbjct: 395 FMGLEELQHLDFQHST--LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452

Query: 66  IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           + + G+    +  S +F +   L  L+L + +L+ +   +F++L  L  LN+ +N L  +
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 4/126 (3%)

Query: 1   MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE-LPSDLFWN 59
           +     F  ++ L  + ISY   + K    G+F  L  LNT+ +  +S  +   S++F N
Sbjct: 414 VTEFSAFLSLEKLLYLDISY--TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471

Query: 60  STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
           +TN+T + L+   +L  +   +F    +L  L +  N L +L  + +  L  L TL+   
Sbjct: 472 TTNLTFLDLS-KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530

Query: 120 NQLENI 125
           N++E  
Sbjct: 531 NRIETS 536

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 2/122 (1%)

Query: 1   MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 60
           +    +F  +  L  +K++ +        S +FAN   L  + L +  + ++   +F   
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFK-DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496

Query: 61  TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
             +  + +  H  L  L S+ +     L  L+   N+++     L    K L   NL NN
Sbjct: 497 HRLQLLNM-SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

Query: 121 QL 122
            +
Sbjct: 556 SV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 22/128 (17%), Positives = 53/128 (41%), Gaps = 8/128 (6%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
               +  + +L  + ++ +   ++    G F+ L  L  ++  E+ +A L S        
Sbjct: 72  EDKAWHGLHHLSNLILTGNP--IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129

Query: 63  ITNIVLTGHKKLTSLP-STLFRDCKKLVKLELQRNKLKYLPENLFESLKEL----YTLNL 117
           +  + +  H  + S      F +   LV ++L  N ++ +  N  + L+E      +L++
Sbjct: 130 LKKLNV-AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188

Query: 118 KNNQLENI 125
             N ++ I
Sbjct: 189 SLNPIDFI 196

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 8e-09
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 40  NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 99
            T    +  ++++P D+    ++  NI L+    L  L S  F +  +L  L+L R +++
Sbjct: 14  ITYQCMDQKLSKVPDDIP---SSTKNIDLS-FNPLKILKSYSFSNFSELQWLDLSRCEIE 69

Query: 100 YLPENLFESLKELYTLNLKNNQLENI 125
            + +  +  L  L  L L  N +++ 
Sbjct: 70  TIEDKAWHGLHHLSNLILTGNPIQSF 95

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 7e-08
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 5/121 (4%)

Query: 7   FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA-ELPSDLFWNSTNITN 65
              +  L  + +S +   L       +++L   +   L  S     + S  F     + +
Sbjct: 346 KVALPSLSYLDLSRNA--LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQH 403

Query: 66  IVLTGHKKLTSLPST-LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN 124
           +    H  L  +     F   +KL+ L++     K   + +F  L  L TL +  N  ++
Sbjct: 404 LDF-QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462

Query: 125 I 125
            
Sbjct: 463 N 463

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.8 bits (109), Expect = 7e-07
 Identities = 22/126 (17%), Positives = 50/126 (39%), Gaps = 9/126 (7%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP-SDLFWNS 60
           F    F+ +  L+ +        L  L S     L  L  + +  + I        F N 
Sbjct: 95  FSPGSFSGLTSLENLVAVET--KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152

Query: 61  TNITNIVLTGHKKLTSLPSTLFRDCKKL----VKLELQRNKLKYLPENLFESLKELYTLN 116
           TN+ ++ L  +  + ++     +  ++     + L++  N + ++ +  F+ +K L+ L 
Sbjct: 153 TNLVHVDL-SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELT 210

Query: 117 LKNNQL 122
           L+ N  
Sbjct: 211 LRGNFN 216

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 12/129 (9%)

Query: 3   PKDLFAEMKYLQVIKISYHK----DSLKELPSGLFANLPLLNTVILGES--SIAELPSDL 56
            K     +  L V ++   +     +L+     +   L  +       +  +        
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280

Query: 57  FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN 116
           F    N++ + L     +  L         K   L + R +LK  P      L  L +L 
Sbjct: 281 FHCLANVSAMSLA-GVSIKYLEDVPK--HFKWQSLSIIRCQLKQFP---TLDLPFLKSLT 334

Query: 117 LKNNQLENI 125
           L  N+    
Sbjct: 335 LTMNKGSIS 343

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 18/145 (12%)

Query: 1   MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 60
           +F   +   +  + + +      +        F  L  ++ + L   SI  L        
Sbjct: 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK 308

Query: 61  --------TNITNIVLTGHKKLTSL--------PSTLFRDCKKLVKLELQRNKLKYLPEN 104
                     +          L SL         S        L  L+L RN L +    
Sbjct: 309 WQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCC 368

Query: 105 LFESLK--ELYTLNLKNNQLENITR 127
            +  L    L  L+L  N    ++ 
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAIIMSA 393

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 9/109 (8%), Positives = 27/109 (24%), Gaps = 7/109 (6%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNIT-----NIVLTGHKKLTSLP 78
            +  +    F  + L    + G  + + +      N   +             + L    
Sbjct: 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251

Query: 79  STLFRDCKKLVKLEL--QRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
            ++      +   E               F  L  +  ++L    ++ +
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL 300

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 62.8 bits (153), Expect = 3e-13
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
               +P+G+  N  +L    L ++ I +L   +F +  N+  + L    +L +LP  +F 
Sbjct: 30  RHASVPAGIPTNAQILY---LHDNQITKLEPGVFDSLINLKELYLGS-NQLGALPVGVFD 85

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
              +L  L+L  N+L  LP  +F+ L  L  L +  N+L  + R
Sbjct: 86  SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR 129

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 62.4 bits (152), Expect = 4e-13
 Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 2/107 (1%)

Query: 21  HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80
           H + + +L  G+F +L  L  + LG + +  LP  +F + T +T + L  + +LT LPS 
Sbjct: 48  HDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSA 106

Query: 81  LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
           +F     L +L +  NKL  LP    E L  L  L L  NQL++I  
Sbjct: 107 VFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPH 152

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 4/119 (3%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
              +F  +  L+ + +  ++  L  LP G+F +L  L  + LG + +  LPS +F    +
Sbjct: 56  EPGVFDSLINLKELYLGSNQ--LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH 113

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
           +  + +    KLT LP         L  L L +N+LK +P   F+ L  L    L  N 
Sbjct: 114 LKELFM-CCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.5 bits (155), Expect = 3e-13
 Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 5/123 (4%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
           PK +F+ ++ +  I++  +         G F  L L   + + E+ +  +P DL      
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLN-YLRISEAKLTGIPKDLP---ET 194

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +  + L  H K+ ++         KL +L L  N+++ +       L  L  L+L NN+L
Sbjct: 195 LNELHL-DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253

Query: 123 ENI 125
             +
Sbjct: 254 SRV 256

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
            LK +P  +  +  LL+   L  + I+EL  D F    ++  +VL  + K++ +    F 
Sbjct: 44  GLKAVPKEISPDTTLLD---LQNNDISELRKDDFKGLQHLYALVLV-NNKISKIHEKAFS 99

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
             +KL KL + +N L  +P NL  SL EL    + +N++  +
Sbjct: 100 PLRKLQKLYISKNHLVEIPPNLPSSLVELR---IHDNRIRKV 138

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.8 bits (148), Expect = 3e-12
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 8/125 (6%)

Query: 1   MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 60
            F    F  +K L  ++IS  K  L  +P  L   L  L+   L  + I  +  +     
Sbjct: 163 GFEPGAFDGLK-LNYLRISEAK--LTGIPKDLPETLNELH---LDHNKIQAIELEDLLRY 216

Query: 61  TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
           + +  + L GH ++  + +        L +L L  NKL  +P      LK L  + L  N
Sbjct: 217 SKLYRLGL-GHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTN 274

Query: 121 QLENI 125
            +  +
Sbjct: 275 NITKV 279

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 56.9 bits (138), Expect = 6e-11
 Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 32/149 (21%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
            +  F+ ++ LQ + IS +   L E+P  L ++L  L    + ++ I ++P  +F    N
Sbjct: 94  HEKAFSPLRKLQKLYISKNH--LVEIPPNLPSSLVELR---IHDNRIRKVPKGVFSGLRN 148

Query: 63  ITNIVLTG------------------------HKKLTSLPSTLFRDCKKLVKLELQRNKL 98
           +  I + G                          KLT +P  L      L +L L  NK+
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE---TLNELHLDHNKI 205

Query: 99  KYLPENLFESLKELYTLNLKNNQLENITR 127
           + +         +LY L L +NQ+  I  
Sbjct: 206 QAIELEDLLRYSKLYRLGLGHNQIRMIEN 234

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 56.9 bits (138), Expect = 8e-11
 Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 8/109 (7%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
            ++ +          L  + LG + I  + +        +  + L  + KL+ +P+    
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD-NNKLSRVPAG-LP 261

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKE------LYTLNLKNNQLENIT 126
           D K L  + L  N +  +  N F  +           ++L NN +    
Sbjct: 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 9/107 (8%)

Query: 24  SLKELPSGLFANLPL-----LNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP 78
            L  LP    A  P      L  V   +  +  +P ++   S + T + L  +  ++ L 
Sbjct: 15  DLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEI---SPDTTLLDLQ-NNDISELR 70

Query: 79  STLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
              F+  + L  L L  NK+  + E  F  L++L  L +  N L  I
Sbjct: 71  KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 16/127 (12%), Positives = 45/127 (35%), Gaps = 12/127 (9%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
             +       L  + + +++  ++ + +G  + LP L  + L  + ++ +P+ L  +   
Sbjct: 209 ELEDLLRYSKLYRLGLGHNQ--IRMIENGSLSFLPTLRELHLDNNKLSRVPAGLP-DLKL 265

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCK------KLVKLELQRNKLKY--LPENLFESLKELYT 114
           +  + L     +T +    F              + L  N + Y  +    F  + +   
Sbjct: 266 LQVVYL-HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324

Query: 115 LNLKNNQ 121
           +   N +
Sbjct: 325 IQFGNYK 331

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 62.7 bits (153), Expect = 3e-13
 Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 25  LKELPSGLFANLPLLNTVILGES-SIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
           L+ +PS  F+NLP ++ + +    ++ +L S  F+N + +T+I +   + LT +     +
Sbjct: 43  LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102

Query: 84  DCKKLVKLELQRNKLKYLPE-NLFESLKELYTLNL-KNNQLENI 125
           +   L  L +    LK  P+     S    + L +  N  + +I
Sbjct: 103 ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI 146

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 3/95 (3%)

Query: 25  LKELPSGLFANLP-LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
           +  +P   F  L     T+ L  +    +    F N T +  + L  +K LT +    F 
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF-NGTKLDAVYLNKNKYLTVIDKDAFG 201

Query: 84  D-CKKLVKLELQRNKLKYLPENLFESLKELYTLNL 117
                   L++ +  +  LP    E LKEL   N 
Sbjct: 202 GVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.9 bits (138), Expect = 4e-11
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 5/103 (4%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
            ++ +PS      P   T+ L E+ +  +PS  F N  NI+ I ++    L  L S  F 
Sbjct: 22  DIQRIPSLP----PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY 77

Query: 84  DCKKLVKLELQRNK-LKYLPENLFESLKELYTLNLKNNQLENI 125
           +  K+  +E++  + L Y+  +  + L  L  L + N  L+  
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF 120

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 25/150 (16%), Positives = 52/150 (34%), Gaps = 28/150 (18%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
               F  +  +  I+I   + +L  +       LPLL  + +  + +   P      ST+
Sbjct: 72  ESHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTD 130

Query: 63  I-TNIVLTGHKKLTSLPSTLFRDCK------------------------KLVKLELQRNK 97
           I   + +T +  +TS+P   F+                           KL  + L +NK
Sbjct: 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK 190

Query: 98  -LKYLPENLFESLKE-LYTLNLKNNQLENI 125
            L  + ++ F  +      L++    +  +
Sbjct: 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 61.6 bits (150), Expect = 6e-13
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 29  PSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL 88
             GLF  LP L  + L  + +  +  + F  +++I  + L  +K +  + + +F    +L
Sbjct: 46  SDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQL 104

Query: 89  VKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
             L L  N++  +    FE L  L +LNL +N
Sbjct: 105 KTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 60.0 bits (146), Expect = 2e-12
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 5/105 (4%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSD-LFWNSTNITNIVLTGHKKLTSLPSTLF 82
            LKE+P  +  +   L    L ++ +  + SD LF    ++  + L    +LT +    F
Sbjct: 19  GLKEIPRDIPLHTTELL---LNDNELGRISSDGLFGRLPHLVKLEL-KRNQLTGIEPNAF 74

Query: 83  RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
                + +L+L  NK+K +   +F  L +L TLNL +NQ+  +  
Sbjct: 75  EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 60.1 bits (145), Expect = 6e-12
 Identities = 16/69 (23%), Positives = 31/69 (44%)

Query: 57  FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN 116
              + N+T + +   + L  L     R   +L  L + ++ L+++  + F     L  LN
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86

Query: 117 LKNNQLENI 125
           L  N LE++
Sbjct: 87  LSFNALESL 95

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.2 bits (127), Expect = 2e-09
 Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 4/107 (3%)

Query: 17  KISYHKDSLKELPSGLFANLPLLNTVIL-GESSIAELPSDLFWNSTNITNIVLTGHKKLT 75
            +   +D   +           L  + +  +  +  L          + N+ +     L 
Sbjct: 12  GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV-KSGLR 69

Query: 76  SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
            +    F    +L +L L  N L+ L     + L  L  L L  N L
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 5e-06
 Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 2/65 (3%)

Query: 64  TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNK-LKYLPENLFESLKELYTLNLKNNQL 122
           ++ +                  + L +L ++  + L++L       L EL  L +  + L
Sbjct: 10  SSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 123 ENITR 127
             +  
Sbjct: 69  RFVAP 73

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 57.7 bits (140), Expect = 2e-11
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 2/102 (1%)

Query: 21  HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80
             +    +P    +N   L  + L  + I+ L +  F N T +  ++L  + +L  +P  
Sbjct: 39  DGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL-SYNRLRCIPPR 96

Query: 81  LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
            F   K L  L L  N +  +PE  F  L  L  L +  N L
Sbjct: 97  TFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 57.3 bits (139), Expect = 2e-11
 Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 5/104 (4%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
            LK LP G+  ++  L    L  +    +P +   N  ++T I L  + ++++L +  F 
Sbjct: 21  GLKVLPKGIPRDVTELY---LDGNQFTLVPKE-LSNYKHLTLIDL-SNNRISTLSNQSFS 75

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
           +  +L+ L L  N+L+ +P   F+ LK L  L+L  N +  +  
Sbjct: 76  NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE 119

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 4/124 (3%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
               F     LQV+ +S     ++ +  G + +L  L+T+IL  + I  L    F   ++
Sbjct: 44  GSYSFFSFPELQVLDLSRC--EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQ 121
           +  +V      L SL +      K L +L +  N ++       F +L  L  L+L +N+
Sbjct: 102 LQKLVA-VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 122 LENI 125
           +++I
Sbjct: 161 IQSI 164

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.7 bits (140), Expect = 4e-11
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 1/102 (0%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
            L+ L S  F + P L  + L    I  +    + + ++++ ++LT    + SL    F 
Sbjct: 39  PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFS 97

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
               L KL      L  L       LK L  LN+ +N +++ 
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.0 bits (138), Expect = 9e-11
 Identities = 18/98 (18%), Positives = 43/98 (43%)

Query: 28  LPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKK 87
               +F +L  L  + +  +      + +F   +++  + + G+    +    +F + + 
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471

Query: 88  LVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           L  L+L + +L+ L    F SL  L  LN+ +N   ++
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 4/126 (3%)

Query: 1   MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE-LPSDLFWN 59
           M    +F  ++ L  + IS+     +   +G+F  L  L  + +  +S  E    D+F  
Sbjct: 411 MSEFSVFLSLRNLIYLDISH--THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 60  STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
             N+T + L    +L  L  T F     L  L +  N    L    ++ L  L  L+   
Sbjct: 469 LRNLTFLDL-SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 527

Query: 120 NQLENI 125
           N +   
Sbjct: 528 NHIMTS 533

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.9 bits (130), Expect = 8e-10
 Identities = 17/116 (14%), Positives = 40/116 (34%), Gaps = 1/116 (0%)

Query: 7   FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
             ++  L+ + +S +  S K   S        L  + L  + +  + S+ F     + ++
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHL 401

Query: 67  VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
                        ++F   + L+ L++     +     +F  L  L  L +  N  
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 3/122 (2%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
               +F  +  L+V+K++ +    +     +F  L  L  + L +  + +L    F + +
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQ-ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESL-KELYTLNLKNN 120
           ++  + +  H    SL +  ++    L  L+   N +    +   +     L  LNL  N
Sbjct: 495 SLQVLNM-SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

Query: 121 QL 122
             
Sbjct: 554 DF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 9/127 (7%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP-SDLFWNS 60
                F+ +  LQ +       +L  L +    +L  L  + +  + I      + F N 
Sbjct: 91  LALGAFSGLSSLQKLVAVE--TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 61  TNITNIVLTGHKKLTSLPSTLFRDCKKL----VKLELQRNKLKYLPENLFESLKELYTLN 116
           TN+ ++ L    K+ S+  T  R   ++    + L+L  N + ++    F+ ++ L+ L 
Sbjct: 149 TNLEHLDL-SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLT 206

Query: 117 LKNNQLE 123
           L+NN   
Sbjct: 207 LRNNFDS 213

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 41  TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY 100
           T    E +  ++P +L     +  N+ L+    L  L S  F    +L  L+L R +++ 
Sbjct: 11  TYQCMELNFYKIPDNLP---FSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 101 LPENLFESLKELYTLNLKNNQLENI 125
           + +  ++SL  L TL L  N ++++
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSL 91

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 5   DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL-PSDLFWNSTNI 63
                   L+ + +S++   +  + S  F  L  L  +    S++ ++    +F +  N+
Sbjct: 367 QSDFGTTSLKYLDLSFNG--VITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 64  TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY-LPENLFESLKELYTLNLKNNQL 122
             + +  H       + +F     L  L++  N  +     ++F  L+ L  L+L   QL
Sbjct: 424 IYLDI-SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 123 ENIT 126
           E ++
Sbjct: 483 EQLS 486

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 3e-11
 Identities = 25/136 (18%), Positives = 61/136 (44%), Gaps = 14/136 (10%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFA-NLPLLNTVILGESSIAELPSDLFWNS 60
            P+D  A    ++ +  S++K  LK +P+   A ++ ++ +V    + I     ++  + 
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNK--LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667

Query: 61  TNITNIVLT----GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENL-------FESL 109
            +   I  +     + ++   P+ LF     +  + L  N +  +PEN        +++ 
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 110 KELYTLNLKNNQLENI 125
             L T++L+ N+L ++
Sbjct: 728 YLLTTIDLRFNKLTSL 743

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 2e-10
 Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 9/125 (7%)

Query: 7   FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS-TNITN 65
           F     L  +K+ Y++  ++E+P    A    +  +    + +  +P+     S   + +
Sbjct: 591 FGTNVKLTDLKLDYNQ--IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648

Query: 66  IVLTGHKKLTSLPSTLFRD-----CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
           +    + K+ S    +              + L  N+++  P  LF +   + T+ L NN
Sbjct: 649 VDF-SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707

Query: 121 QLENI 125
            + +I
Sbjct: 708 LMTSI 712

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 4e-09
 Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 5/113 (4%)

Query: 14  QVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP-SDLFWNSTNITNIVLTGHK 72
           + I  +  K     L        P +    +G +++ E P S        +  +    H 
Sbjct: 526 RGISAAQLKADWTRLAD-DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC-VHN 583

Query: 73  KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           K+  L +  F    KL  L+L  N+++ +PE+      ++  L   +N+L+ I
Sbjct: 584 KVRHLEA--FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI 634

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 22/114 (19%), Positives = 50/114 (43%), Gaps = 14/114 (12%)

Query: 25  LKELPSGLFANLPLLN-----TVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS 79
           +      +  ++         TV L  + I + P++LF   + I+ I+L+ +  +TS+P 
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS-NNLMTSIPE 714

Query: 80  TL-------FRDCKKLVKLELQRNKLKYLPENL-FESLKELYTLNLKNNQLENI 125
                    +++   L  ++L+ NKL  L ++    +L  L  +++  N   + 
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF 768

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.6 bits (113), Expect = 2e-07
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 14/126 (11%)

Query: 7   FAEMKYLQVIKISYHKDSLKELPSGL-FANLPLLNTVILGESSIAELPSDLFWNSTNIT- 64
           +     L  I + ++K  L  L        LP L+ + +  +  +  P+    NS+ +  
Sbjct: 724 YKNTYLLTTIDLRFNK--LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL-NSSQLKA 780

Query: 65  -----NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
                     G++ L   P+     C  L++L++  N ++ + E L   L     L++ +
Sbjct: 781 FGIRHQRDAEGNRILRQWPTG-ITTCPSLIQLQIGSNDIRKVDEKLTPQLYI---LDIAD 836

Query: 120 NQLENI 125
           N   +I
Sbjct: 837 NPNISI 842

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 5e-07
 Identities = 18/128 (14%), Positives = 41/128 (32%), Gaps = 17/128 (13%)

Query: 7   FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
              +  LQ+I  +            +       +     E+         + N  ++T++
Sbjct: 444 IQRLTKLQIIYFANSP--FTYDNIAVDWEDANSDYAKQYENEELS-----WSNLKDLTDV 496

Query: 67  VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE---------NLFESLKELYTLNL 117
            L     +T LP  L+ D  +L  L +  N+     +         +  ++  ++    +
Sbjct: 497 ELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555

Query: 118 KNNQLENI 125
             N LE  
Sbjct: 556 GYNNLEEF 563

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 54.9 bits (133), Expect = 1e-10
 Identities = 20/55 (36%), Positives = 34/55 (61%)

Query: 73  KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
           ++T L   +F    +L +L+L  N+L  LP  +F+ L +L  L+L +NQL++I R
Sbjct: 41  QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR 95

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 53.4 bits (129), Expect = 4e-10
 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 4/97 (4%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
           SL  +P+G+     +L    L ++ I +L   +F   T +T + L  + +LT LP+ +F 
Sbjct: 20  SLASVPTGIPTTTQVLY---LYDNQITKLEPGVFDRLTQLTRLDL-DNNQLTVLPAGVFD 75

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
              +L +L L  N+LK +P   F++LK L  + L NN
Sbjct: 76  KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 45.7 bits (109), Expect = 3e-07
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 72  KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           K L S+P+ +    + L    L  N++  L   +F+ L +L  L+L NNQL
Sbjct: 19  KSLASVPTGIPTTTQVL---YLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 54.2 bits (131), Expect = 2e-10
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
            L  +P+G+  +   L    L  + I +L   +F +  N+  +      KLT++P+ +F 
Sbjct: 23  RLASVPAGIPTDKQRLW---LNNNQITKLEPGVFDHLVNLQQLYF-NSNKLTAIPTGVFD 78

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
              +L +L+L  N LK +P   F++LK L  + L NN
Sbjct: 79  KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 54.2 bits (131), Expect = 2e-10
 Identities = 18/55 (32%), Positives = 30/55 (54%)

Query: 73  KLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
           ++T L   +F     L +L    NKL  +P  +F+ L +L  L+L +N L++I R
Sbjct: 44  QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR 98

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 45.3 bits (108), Expect = 5e-07
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 72  KKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
            +L S+P+ +  D ++L    L  N++  L   +F+ L  L  L   +N+L
Sbjct: 22  IRLASVPAGIPTDKQRL---WLNNNQITKLEPGVFDHLVNLQQLYFNSNKL 69

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.2 bits (131), Expect = 7e-10
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 32  LFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL 91
           +  N        + +SS+ +  + L  ++ N+  + L     L+ + +       KL  L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDL-SGNPLSQISAADLAPFTKLELL 63

Query: 92  ELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
            L  N L    +   ESL  L TL+L NN ++ +
Sbjct: 64  NLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL 95

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 4e-09
 Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 25  LKELPSGLFANLPLLNTVILGESSIAELP-SDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
           +  L          +  + L  + I  +  ++L  +S  + ++ L  +  +  +   +  
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL-QYNFIYDVKGQVV- 189

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
              KL  L+L  NKL ++    F+S   +  ++L+NN+L  I
Sbjct: 190 -FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI 229

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 54  SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 113
            ++  N        +T    L    ++L +    + +L+L  N L  +         +L 
Sbjct: 3   HEIKQNGNRYKIEKVT-DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 114 TLNLKNNQLENI 125
            LNL +N L   
Sbjct: 62  LLNLSSNVLYET 73

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.8 bits (117), Expect = 5e-08
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 23/141 (16%)

Query: 4   KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 63
            ++       ++ K++     LK+  + L  +   +  + L  + ++++ +      T +
Sbjct: 3   HEIKQNGNRYKIEKVTDSS--LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 64  TNIVLTGHKKLTSLPS-----------------TLFRDCKKLVKLELQRNKLKYLPENLF 106
             + L     L                              +  L    N +  +  +  
Sbjct: 61  ELLNL-SSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG 119

Query: 107 ESLKELYTLNLKNNQLENITR 127
           +  K +Y   L NN++  +  
Sbjct: 120 QGKKNIY---LANNKITMLRD 137

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 16/142 (11%), Positives = 46/142 (32%), Gaps = 25/142 (17%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
              L      ++ + +S +   L ++ +   A    L  + L  + + E       + + 
Sbjct: 26  LASLRQSAWNVKELDLSGNP--LSQISAADLAPFTKLELLNLSSNVLYETLD--LESLST 81

Query: 63  ITNIVLTG------------------HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN 104
           +  + L                    +  ++ +  +  +       + L  NK+  L + 
Sbjct: 82  LRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQ---GKKNIYLANNKITMLRDL 138

Query: 105 LFESLKELYTLNLKNNQLENIT 126
                  +  L+LK N+++ + 
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVN 160

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 16/103 (15%), Positives = 37/103 (35%), Gaps = 7/103 (6%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP-STLF 82
           ++  +          +    L  + I  L        + +  + L    ++ ++  + L 
Sbjct: 110 NISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDL-KLNEIDTVNFAELA 165

Query: 83  RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
                L  L LQ N +  +   +     +L TL+L +N+L  +
Sbjct: 166 ASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFM 206

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 19/127 (14%), Positives = 45/127 (35%), Gaps = 8/127 (6%)

Query: 1   MFPKDLFAEMKYLQVIKISYHKDSLKELPSG-LFANLPLLNTVILGESSIAELPSDLFWN 59
           M           +Q + +  ++  +  +    L A+   L  + L  + I ++   + + 
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF- 190

Query: 60  STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
              +  + L    KL  +    F+    +  + L+ NKL  + +      + L   +L+ 
Sbjct: 191 -AKLKTLDL-SSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRG 246

Query: 120 NQLENIT 126
           N     T
Sbjct: 247 NGFHCGT 253

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 12/120 (10%)

Query: 7   FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
              +  L+ + ++ +   ++EL        P + T+    ++I+ +            NI
Sbjct: 76  LESLSTLRTLDLNNNY--VQELL-----VGPSIETLHAANNNISRVSCSRG---QGKKNI 125

Query: 67  VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN-LFESLKELYTLNLKNNQLENI 125
            L  + K+T L         ++  L+L+ N++  +    L  S   L  LNL+ N + ++
Sbjct: 126 YL-ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.0 bits (125), Expect = 5e-09
 Identities = 19/110 (17%), Positives = 42/110 (38%), Gaps = 9/110 (8%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLF-WNSTNITNIVLTG-------HKKLT 75
            + E+P+        +  +    + +  +P+     + + ++ I  +         K   
Sbjct: 364 QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423

Query: 76  SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
            L  T F+    +  + L  N++   P+ LF +   L ++NL  N L  I
Sbjct: 424 PLDPTPFK-GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 25/138 (18%), Positives = 62/138 (44%), Gaps = 18/138 (13%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFA-NLPLLNTVILGESSIAELPSDLF---- 57
           P +     + ++ +  +++K  LK +P+   A ++ +++ +    + I  +    F    
Sbjct: 369 PANFCGFTEQVENLSFAHNK--LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 58  ---WNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENL-------FE 107
              +   N+++I L  + +++  P  LF     L  + L  N L  +P+N        F+
Sbjct: 427 PTPFKGINVSSINL-SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485

Query: 108 SLKELYTLNLKNNQLENI 125
           +   L +++L+ N+L  +
Sbjct: 486 NTYLLTSIDLRFNKLTKL 503

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 10/115 (8%)

Query: 19  SYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP 78
           S    +   L    F     ++++ L  + I++ P +LF   + +++I L     LT +P
Sbjct: 416 SVDGKNFDPLDPTPF-KGINVSSINLSNNQISKFPKELFSTGSPLSSINL-MGNMLTEIP 473

Query: 79  STL-------FRDCKKLVKLELQRNKLKYLPENL-FESLKELYTLNLKNNQLENI 125
                     F++   L  ++L+ NKL  L ++    +L  L  ++L  N     
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF 528

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 14/126 (11%)

Query: 7   FAEMKYLQVIKISYHKDSLKELPSGL-FANLPLLNTVILGESSIAELPSDLFWNSTNIT- 64
           F     L  I + ++K  L +L        LP L  + L  +S ++ P+    NS+ +  
Sbjct: 484 FKNTYLLTSIDLRFNK--LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL-NSSTLKG 540

Query: 65  -----NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
                     G++ L   P  +   C  L +L++  N ++ + E +  ++     L++K+
Sbjct: 541 FGIRNQRDAQGNRTLREWPEGITL-CPSLTQLQIGSNDIRKVNEKITPNIS---VLDIKD 596

Query: 120 NQLENI 125
           N   +I
Sbjct: 597 NPNISI 602

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 18/126 (14%), Positives = 45/126 (35%), Gaps = 9/126 (7%)

Query: 7   FAEMKYLQVIKISY-HKDSLKELPSGL-----FANLPLLNTVILGESSIAELP-SDLFWN 59
              +  +Q+I ++     S ++L               +  + +G +++   P       
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328

Query: 60  STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
              +  +    + +L            KL  L L  N++  +P N     +++  L+  +
Sbjct: 329 MKKLGMLEC-LYNQLEGKLPAFGS-EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386

Query: 120 NQLENI 125
           N+L+ I
Sbjct: 387 NKLKYI 392

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 10/100 (10%), Positives = 31/100 (31%), Gaps = 9/100 (9%)

Query: 35  NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQ 94
                       +   +     + N  ++T++ +     LT LP+ L     ++  + + 
Sbjct: 223 ICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVA 281

Query: 95  RNKLKYLPENL--------FESLKELYTLNLKNNQLENIT 126
            N+     +              +++  + +  N L+   
Sbjct: 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 14/120 (11%), Positives = 40/120 (33%), Gaps = 6/120 (5%)

Query: 7   FAEMKYLQVIKISYHKDS---LKELPSGLFANLPLLNTVILGESSIAELPSDL-FWNSTN 62
             ++  L+V+ +  H +        P G+ AN+       +               + ++
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +    +    +  S+     R   K  ++    N + ++ + +   L +L    + N+  
Sbjct: 161 LIKDCINSDPQQKSIKK-SSRITLKDTQIGQLSNNITFVSKAVMR-LTKLRQFYMGNSPF 218

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.8 bits (124), Expect = 5e-09
 Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 48  SIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFE 107
           ++  +P DL         + L+    ++ L         +L  L L  N+++ L  ++F 
Sbjct: 42  NLTHVPKDL---PPRTKALSLS-QNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL 97

Query: 108 SLKELYTLNLKNNQLENI 125
             ++L  L++ +N+L+NI
Sbjct: 98  FNQDLEYLDVSHNRLQNI 115

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 9e-07
 Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 20  YHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS 79
           Y   +L  +P  L      L+   L ++SI+EL        + +  + L  H ++ SL  
Sbjct: 38  YSNRNLTHVPKDLPPRTKALS---LSQNSISELRMPDISFLSELRVLRL-SHNRIRSLDF 93

Query: 80  TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
            +F   + L  L++  N+L+ +       +  L  L+L  N  + +  
Sbjct: 94  HVFLFNQDLEYLDVSHNRLQNIS---CCPMASLRHLDLSFNDFDVLPV 138

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 2/106 (1%)

Query: 21  HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST 80
                      L++    +N  +L  S    +      + ++ T +  T     T     
Sbjct: 313 KNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFT-QNVFTDSVFQ 371

Query: 81  LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
                K+L  L LQRN LK     +    K + +L   +  L ++ 
Sbjct: 372 GCSTLKRLQTLILQRNGLKNFF-KVALMTKNMSSLETLDVSLNSLN 416

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.3 bits (102), Expect = 5e-06
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 6/103 (5%)

Query: 25  LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST-LFR 83
           ++ L   +F     L  + +  + +  +         ++ ++ L        LP    F 
Sbjct: 88  IRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPM---ASLRHLDL-SFNDFDVLPVCKEFG 143

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELY-TLNLKNNQLENI 125
           +  KL  L L   K + L       L      L+L +  ++  
Sbjct: 144 NLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG 186

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 1/117 (0%)

Query: 9   EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVL 68
            ++YL +  ++  +   +E  +     L  L    +           L+     +   +L
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 69  TGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           +       +             L   +N           +LK L TL L+ N L+N 
Sbjct: 337 SISD-TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 19/150 (12%), Positives = 48/150 (32%), Gaps = 25/150 (16%)

Query: 1   MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP--SDLFW 58
                          +  + +     +      + L  L T+IL  + +      + +  
Sbjct: 343 FIHMVCPPSPSSFTFLNFTQNV--FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK 400

Query: 59  NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKL-----KYLPENL-------- 105
           N +++  + ++ +   +          + ++ L L  N L     + LP  +        
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN 460

Query: 106 --------FESLKELYTLNLKNNQLENITR 127
                      L+ L  LN+ +NQL+++  
Sbjct: 461 RIMSIPKDVTHLQALQELNVASNQLKSVPD 490

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 9e-09
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 32  LFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL 91
           +  N        + +SS+ +  + L  ++ N+  + L     L+ + +       KL  L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDL-SGNPLSQISAADLAPFTKLELL 63

Query: 92  ELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
            L  N L    +   ESL  L TL+L NN ++ +
Sbjct: 64  NLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL 95

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 54  SDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 113
            ++  N        +T    L    ++L +    + +L+L  N L  +         +L 
Sbjct: 3   HEIKQNGNRYKIEKVT-DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 114 TLNLKNNQLENI 125
            LNL +N L   
Sbjct: 62  LLNLSSNVLYET 73

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.0 bits (109), Expect = 5e-07
 Identities = 16/103 (15%), Positives = 37/103 (35%), Gaps = 7/103 (6%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP-STLF 82
           ++  +          +    L  + I  L        + +  + L    ++ ++  + L 
Sbjct: 110 NISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDL-KLNEIDTVNFAELA 165

Query: 83  RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
                L  L LQ N +  +   +     +L TL+L +N+L  +
Sbjct: 166 ASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFM 206

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 23/141 (16%)

Query: 4   KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 63
            ++       ++ K++     LK+  + L  +   +  + L  + ++++ +      T +
Sbjct: 3   HEIKQNGNRYKIEKVTDSS--LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 64  TNIVLTGHKKLTSLPS-----------------TLFRDCKKLVKLELQRNKLKYLPENLF 106
             + L     L                              +  L    N +  +  +  
Sbjct: 61  ELLNL-SSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG 119

Query: 107 ESLKELYTLNLKNNQLENITR 127
           +  K +Y   L NN++  +  
Sbjct: 120 QGKKNIY---LANNKITMLRD 137

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 16/142 (11%), Positives = 46/142 (32%), Gaps = 25/142 (17%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
              L      ++ + +S +   L ++ +   A    L  + L  + + E       + + 
Sbjct: 26  LASLRQSAWNVKELDLSGNP--LSQISAADLAPFTKLELLNLSSNVLYETLD--LESLST 81

Query: 63  ITNIVLTG------------------HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN 104
           +  + L                    +  ++ +  +  +       + L  NK+  L + 
Sbjct: 82  LRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQ---GKKNIYLANNKITMLRDL 138

Query: 105 LFESLKELYTLNLKNNQLENIT 126
                  +  L+LK N+++ + 
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVN 160

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 18/126 (14%), Positives = 44/126 (34%), Gaps = 8/126 (6%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSG-LFANLPLLNTVILGESSIAELPSDLFWNS 60
                      +Q + +  ++  +  +    L A+   L  + L  + I ++   + +  
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF-- 190

Query: 61  TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
             +  + L    KL  +    F+    +  + L+ NKL  + +      + L   +L+ N
Sbjct: 191 AKLKTLDL-SSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGN 247

Query: 121 QLENIT 126
                T
Sbjct: 248 GFHCGT 253

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.5 bits (100), Expect = 7e-06
 Identities = 16/128 (12%), Positives = 44/128 (34%), Gaps = 7/128 (5%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLF---WN 59
            +D F++ + +Q +     K ++K+L         +      G     +LP+        
Sbjct: 254 LRDFFSKNQRVQTV----AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA 309

Query: 60  STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKN 119
                + +L+G    T        +  +  +++  + + + + + +    +   TL  K 
Sbjct: 310 LKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369

Query: 120 NQLENITR 127
             L+    
Sbjct: 370 KALDEQVS 377

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 40  NTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK 99
             V   ++ +  +P DL   S   T + ++    ++ L ++      KL  L +  N+++
Sbjct: 3   FLVDRSKNGLIHVPKDL---SQKTTILNIS-QNYISELWTSDILSLSKLRILIISHNRIQ 58

Query: 100 YLPENLFESLKELYTLNLKNNQLENI 125
           YL  ++F+  +EL  L+L +N+L  I
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKI 84

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 10/124 (8%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
           PKDL  +   L +      ++ + EL +    +L  L  +I+  + I  L   +F  +  
Sbjct: 16  PKDLSQKTTILNI-----SQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE 70

Query: 63  ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPEN-LFESLKELYTLNLKNNQ 121
           +  + L+ H KL  +          L  L+L  N    LP    F ++ +L  L L    
Sbjct: 71  LEYLDLS-HNKLVKISCHPT---VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126

Query: 122 LENI 125
           LE  
Sbjct: 127 LEKS 130

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.1 bits (117), Expect = 5e-08
 Identities = 15/128 (11%), Positives = 45/128 (35%), Gaps = 6/128 (4%)

Query: 1   MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNS 60
                ++     + +   +      + +     + +     +    + + +   +   + 
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSG--TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL 347

Query: 61  TNITNIVLTGHKKLTSLPST--LFRDCKKLVKLELQRNKLKY-LPENLFESLKELYTLNL 117
           T +  ++L    +L  L     +    K L +L++ +N + Y   +      K L +LN+
Sbjct: 348 TELETLIL-QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406

Query: 118 KNNQLENI 125
            +N L + 
Sbjct: 407 SSNILTDT 414

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.8 bits (111), Expect = 3e-07
 Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 1/118 (0%)

Query: 10  MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT 69
           + Y  +  +                +L  L+   +         S ++   +N+     T
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308

Query: 70  GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
                  +           + L+   N L          L EL TL L+ NQL+ +++
Sbjct: 309 VSG-TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 4e-07
 Identities = 23/117 (19%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 6   LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITN 65
           +  +MK LQ + IS +  S  +   G  +    L ++ +  + + +           + +
Sbjct: 369 MTTQMKSLQQLDISQNSVS-YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLD 427

Query: 66  IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           +      K+ S+P  + +  + L +L +  N+LK +P+ +F+ L  L  + L  N  
Sbjct: 428 L---HSNKIKSIPKQVVK-LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 8e-07
 Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
            L  +P  L     +LN   + ++ I+EL +    + + +  +++  H ++  L  ++F+
Sbjct: 11  GLIHVPKDLSQKTTILN---ISQNYISELWTSDILSLSKLRILII-SHNRIQYLDISVFK 66

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR 127
             ++L  L+L  NKL  +          L  L+L  N  + +  
Sbjct: 67  FNQELEYLDLSHNKLVKIS---CHPTVNLKHLDLSFNAFDALPI 107

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 25/151 (16%), Positives = 56/151 (37%), Gaps = 27/151 (17%)

Query: 1   MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELP--SDLFW 58
           M      +++     +  S +   L +       +L  L T+IL  + + EL   +++  
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNL--LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371

Query: 59  NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL----------------------ELQRN 96
              ++  + ++ +              K L+ L                      +L  N
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN 431

Query: 97  KLKYLPENLFESLKELYTLNLKNNQLENITR 127
           K+K +P+ +   L+ L  LN+ +NQL+++  
Sbjct: 432 KIKSIPKQVV-KLEALQELNVASNQLKSVPD 461

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 7/117 (5%)

Query: 7   FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
              +  L+++ IS+++  ++ L   +F     L  + L  + + ++         N+ ++
Sbjct: 41  ILSLSKLRILIISHNR--IQYLDISVFKFNQELEYLDLSHNKLVKISCHPT---VNLKHL 95

Query: 67  VLTGHKKLTSLPST-LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
            L       +LP    F +  +L  L L    L+         L     L +     
Sbjct: 96  DL-SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY 151

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 1e-06
 Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 22/115 (19%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
            L  LP  L A++  L    + ++++  LP+        +  + +    +LTSLP     
Sbjct: 51  GLTTLPDCLPAHITTLV---IPDNNLTSLPALP----PELRTLEV-SGNQLTSLPVLP-P 101

Query: 84  DCKKLVKLELQRNKLKYLPENLFE-------------SLKELYTLNLKNNQLENI 125
              +L         L  LP  L +                 L  L++ +NQL ++
Sbjct: 102 GLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASL 156

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 14/102 (13%)

Query: 25  LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD 84
           L  LP    A    L  +I+  + +  LP       + +  +++    +LTSLP      
Sbjct: 213 LTSLP----ALPSGLKELIVSGNRLTSLPVLP----SELKELMV-SGNRLTSLPMLP--- 260

Query: 85  CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
              L+ L + RN+L  LPE+L   L    T+NL+ N L   T
Sbjct: 261 -SGLLSLSVYRNQLTRLPESLI-HLSSETTVNLEGNPLSERT 300

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 70  GHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           G   LT+LP  L      +  L +  N L  LP        EL TL +  NQL ++
Sbjct: 48  GESGLTTLPDCLP---AHITTLVIPDNNLTSLP----ALPPELRTLEVSGNQLTSL 96

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 23/115 (20%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPS-----DLFWNS--------TNITNIVLTG 70
            L  LP  L   L  L+      + +  LPS      +F N           +  + +  
Sbjct: 92  QLTSLPV-LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSV-S 149

Query: 71  HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
             +L SLP+       +L KL    N+L  LP         L  L++ +NQL ++
Sbjct: 150 DNQLASLPALP----SELCKLWAYNNQLTSLPM----LPSGLQELSVSDNQLASL 196

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 9/103 (8%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLF-WNSTNITNIVLTGHKKLTSLPSTLF 82
           ++    +  F+         L   +  E  S L        + + L     L+SLP  L 
Sbjct: 21  TISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL-NRLNLSSLPDNLP 79

Query: 83  RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
               ++  LE+ +N L  LP    E    L  L+  +N+L  +
Sbjct: 80  ---PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTL 115

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.7 bits (100), Expect = 7e-06
 Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 16/102 (15%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
           +L  LP  L   + +L    + ++++  LP        ++  +    ++ L++LP     
Sbjct: 70  NLSSLPDNLPPQITVLE---ITQNALISLPELP----ASLEYLDACDNR-LSTLPELP-- 119

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
               L  L++  N+L  LP    E    L  +N  NNQL  +
Sbjct: 120 --ASLKHLDVDNNQLTMLP----ELPALLEYINADNNQLTML 155

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 37.3 bits (86), Expect = 6e-04
 Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 22/124 (17%)

Query: 2   FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNST 61
            P +L  ++  L++      +++L  LP  L A+L  L+     ++ ++ LP        
Sbjct: 74  LPDNLPPQITVLEI-----TQNALISLPE-LPASLEYLD---ACDNRLSTLPELP----A 120

Query: 62  NITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
           ++ ++ +  ++ LT LP         L  +    N+L  LP    E    L  L+++NNQ
Sbjct: 121 SLKHLDVDNNQ-LTMLPELP----ALLEYINADNNQLTMLP----ELPTSLEVLSVRNNQ 171

Query: 122 LENI 125
           L  +
Sbjct: 172 LTFL 175

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 36.9 bits (85), Expect = 7e-04
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 73  KLTSLPSTLFRDC---KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
            L SLP+   R+    +  +    + N++ ++PEN+  SL    T+ L++N L +  
Sbjct: 191 LLESLPAVPVRNHHSEETEIFFRCRENRITHIPENIL-SLDPTCTIILEDNPLSSRI 246

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.9 bits (102), Expect = 7e-06
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 5/94 (5%)

Query: 33  FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92
            ANL  L  + +G + I+++ +    + T +  + + G  +++ +      +  +L  L 
Sbjct: 239 LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNV-GSNQISDISV--LNNLSQLNSLF 293

Query: 93  LQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
           L  N+L      +   L  L TL L  N + +I 
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 17/117 (14%), Positives = 50/117 (42%), Gaps = 9/117 (7%)

Query: 7   FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
            A +  L  ++I  ++  + ++ +    +L  L  + +G + I+++      N + + ++
Sbjct: 239 LANLSQLTWLEIGTNQ--ISDINA--VKDLTKLKMLNVGSNQISDISV--LNNLSQLNSL 292

Query: 67  VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123
            L  ++ L +    +      L  L L +N +  +      SL ++ + +  N  ++
Sbjct: 293 FLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 36.8 bits (86), Expect = 8e-04
 Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 9/122 (7%)

Query: 4   KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 63
             +F +    + I+    K S+ ++ +     L  +  +++    +A +        TN+
Sbjct: 13  NQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQG--IEYLTNL 68

Query: 64  TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE 123
             + L G++ +T +      +  KL  L +  NK+  +     ++L  L  L L  + + 
Sbjct: 69  EYLNLNGNQ-ITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNIS 123

Query: 124 NI 125
           +I
Sbjct: 124 DI 125

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 40.9 bits (96), Expect = 1e-05
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 72  KKLT--SLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
           + LT  SLP+    D     +L L  N L  LP  L ++L  L T +L  N  
Sbjct: 18  RGLTWASLPTAFPVD---TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 24  SLKELPSGL-FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82
           +LK     L  A  P    + L    + + P   F   +++ ++ +     L  LP T+ 
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLPQFPDQAF-RLSHLQHMTI-DAAGLMELPDTMQ 124

Query: 83  RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNL-KNNQLENI 125
           +    L  L L RN L+ LP ++  SL  L  L++    +L  +
Sbjct: 125 Q-FAGLETLTLARNPLRALPASI-ASLNRLRELSIRACPELTEL 166

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 8/123 (6%)

Query: 7   FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVIL-GESSIAELPSDLFWNSTNITN 65
            A ++ L+ +KI      L  L   +  +LP L  + L G +++   P         +  
Sbjct: 202 IANLQNLKSLKIRNSP--LSALGPAI-HHLPKLEELDLRGCTALRNYPPIFG-GRAPLKR 257

Query: 66  IVLTGHKKLTSLPSTLFRDCKKLVKLELQRN-KLKYLPENLFESLKELYTLNLKNNQLEN 124
           ++L     L +LP  + R   +L KL+L+    L  LP  +   L     + +  +    
Sbjct: 258 LILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLSRLPSLI-AQLPANCIILVPPHLQAQ 315

Query: 125 ITR 127
           + +
Sbjct: 316 LDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 8/103 (7%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
           +L+     L +               A   ++      N   I     + L +    L  
Sbjct: 24  ALRPYHDVL-SQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTGRALKATADLLED 77

Query: 84  DC-KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
                 V LEL+   L   P+  F  L  L  + +    L  +
Sbjct: 78  ATQPGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAAGLMEL 119

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401

 Score = 39.3 bits (92), Expect = 9e-05
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 6/92 (6%)

Query: 23  DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF 82
            +L++L   +F     L    L ++ I +LP+  F     I  ++L     L  + S  F
Sbjct: 166 STLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVY-AGIEEVLL--PVTLKEIGSQAF 222

Query: 83  RDCKKLVKLELQRNKLKYLPENLFE--SLKEL 112
               +L  +E+    +  + +  F    +  +
Sbjct: 223 LKTSQLKTIEIP-ENVSTIGQEAFRESGITTV 253

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401

 Score = 37.0 bits (86), Expect = 6e-04
 Identities = 18/118 (15%), Positives = 42/118 (35%), Gaps = 10/118 (8%)

Query: 7   FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI 66
           F +   L+ I+I    +++  +    F    +  TV L  + +  + S  F+    +  +
Sbjct: 222 FLKTSQLKTIEIP---ENVSTIGQEAFRESGI-TTVKLP-NGVTNIASRAFYYCPELAEV 276

Query: 67  VL----TGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
                         +       C KL + E+    ++ L + L    +++  L +  N
Sbjct: 277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 5/100 (5%)

Query: 27  ELPSGLFANLPLLNTVILGESSIA-ELPSDLFWNSTNITNIVLTGHKKLT-SLPSTLFRD 84
           E+P  L      L  + L  +     +P     + + + ++ L      +  LP      
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLAL-SSNNFSGELPMDTLLK 341

Query: 85  CKKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLE 123
            + L  L+L  N+    LPE+L      L TL+L +N   
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 9/127 (7%)

Query: 5   DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWN----- 59
           +   +   L +I +    D L      L     L     +  + + +L S          
Sbjct: 378 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK 437

Query: 60  -STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLK 118
                  ++   HK LT L          +  L+L  N+L+ LP  L  +L+ L  L   
Sbjct: 438 MEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQAS 494

Query: 119 NNQLENI 125
           +N LEN+
Sbjct: 495 DNALENV 501

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 36.7 bits (84), Expect = 9e-04
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 61  TNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN 120
             +T++ L  H +L +LP  L    + L  L+   N L+ +      +L  L  L L NN
Sbjct: 463 LLVTHLDL-SHNRLRALPPAL-AALRCLEVLQASDNALENVDG--VANLPRLQELLLCNN 518

Query: 121 QLENIT 126
           +L+   
Sbjct: 519 RLQQSA 524

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 4   KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNI 63
           K +   M  L  + IS  K +   +P   FA    L  + L   ++  +   +F N   +
Sbjct: 219 KLIRDYMPNLVSLDIS--KTNATTIPDFTFAQKKYLLKIKLP-HNLKTIGQRVFSNCGRL 275

Query: 64  TNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFE---SLKELY 113
              +      +T++    F  C  L  +    +K+  L + LF      K +Y
Sbjct: 276 AGTL-ELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 13/102 (12%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
            L++LP     N   L  + +  +S+ +LP        ++  I   G+ +L  LP    +
Sbjct: 142 QLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLP----PSLEFIAA-GNNQLEELPE--LQ 192

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           +   L  +    N LK LP    +    L ++   NN LE +
Sbjct: 193 NLPFLTAIYADNNSLKKLP----DLPLSLESIVAGNNILEEL 230

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 33  FANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE 92
              L  L+ + L  + + ++ +    + TN+T++ L  + ++++L         KL +L+
Sbjct: 217 LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDL-ANNQISNLAP--LSGLTKLTELK 271

Query: 93  LQRNKLKYLPENLFESLKELYTLNLKNNQLENIT 126
           L  N++  +       L  L  L L  NQLE+I+
Sbjct: 272 LGANQISNISP--LAGLTALTNLELNENQLEDIS 303

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 82  FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           F   ++L  L +  N++  + E L ++L +L  L L NN L  +
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	127
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.86
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.86
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.85
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.84
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.84
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.82
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.81
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.81
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.8
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.8
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.8
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.8
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.8
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.79
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.79
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.79
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.79
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.79
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.78
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.78
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.77
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.77
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.76
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.76
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.76
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.75
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.75
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.75
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.75
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.75
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.74
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.74
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.73
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.73
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.72
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.72
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.72
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.72
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.71
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.71
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.71
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.69
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.69
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.69
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.67
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.67
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.67
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.67
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.65
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.65
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.65
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.64
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.64
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.64
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.64
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.63
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.63
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.63
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.63
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.62
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.62
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.61
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.61
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.61
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.61
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.61
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.6
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.6
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.6
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.59
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.59
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.59
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.59
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.58
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.58
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.58
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.57
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.57
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.57
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.56
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.55
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.55
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.53
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.51
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.48
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.48
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.48
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.47
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.47
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.46
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.45
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.44
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.41
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.4
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.39
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.38
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.35
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.33
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.32
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.26
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.24
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.18
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.16
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.15
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.14
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.12
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.11
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.1
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.03
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.95
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.68
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.49
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.47
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.44
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.37
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.36
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.35
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.2
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.19
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.17
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.03
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.03
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.98
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.95
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	97.34
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.85
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	96.73
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.61

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=3.7e-21  Score=120.53  Aligned_cols=122  Identities=31%  Similarity=0.527  Sum_probs=87.5

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      +++..|..+++|+.|++++|.+.  .+++..|..++.|++|++++|+++.+++..|..+++|+.|+++ +|.+..+++..
T Consensus        50 ~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~  126 (251)
T 3m19_A           50 LSDATFRGLTKLTWLNLDYNQLQ--TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG-GNQLKSLPSGV  126 (251)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTT
T ss_pred             cCHhHhcCcccCCEEECCCCcCC--ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC-CCcCCCcChhH
Confidence            44556677777777777777765  6666666777777777777777777776666777777777777 77777777666


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      |..+++|+.+++++|.++.++...|+.+++|+.|++++|.++.++
T Consensus       127 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A          127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             hccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            666777777777777777776655667777777777777776654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.86  E-value=2.1e-21  Score=119.68  Aligned_cols=117  Identities=31%  Similarity=0.463  Sum_probs=72.2

Q ss_pred             chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031           3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF   82 (127)
Q Consensus         3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~   82 (127)
                      +++.|..+++|+.|++++|++.  .+++..|..++.|++|++++|.++.++...|..+++|+.|+++ +|.+..+++..|
T Consensus        48 ~~~~~~~l~~L~~L~Ls~N~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~-~N~l~~~~~~~~  124 (220)
T 2v9t_B           48 PPGAFSPYKKLRRIDLSNNQIS--ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN-ANKINCLRVDAF  124 (220)
T ss_dssp             CTTSSTTCTTCCEEECCSSCCC--EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTT
T ss_pred             CHhHhhCCCCCCEEECCCCcCC--CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC-CCCCCEeCHHHc
Confidence            4445566666666666666654  5555555666666666666666666666555666666666666 666666655555


Q ss_pred             ccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcc
Q psy8031          83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL  122 (127)
Q Consensus        83 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i  122 (127)
                      ..+++|+.+++++|.++.++...|..+++|+.+++++|++
T Consensus       125 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            5566666666666666666655555666666666666654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.86  E-value=1e-20  Score=119.63  Aligned_cols=121  Identities=36%  Similarity=0.558  Sum_probs=58.2

Q ss_pred             chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031           3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF   82 (127)
Q Consensus         3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~   82 (127)
                      ++++|..+++|+.|++++|.+.  .+++..|..+++|++|++++|.++.+++..|..+++|+.|+++ +|.+..++...|
T Consensus        77 ~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~  153 (270)
T 2o6q_A           77 PAGIFKELKNLETLWVTDNKLQ--ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG-YNELQSLPKGVF  153 (270)
T ss_dssp             CTTTTSSCTTCCEEECCSSCCC--CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTT
T ss_pred             ChhhhcCCCCCCEEECCCCcCC--cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECC-CCcCCccCHhHc
Confidence            3344444444444444444433  4444444444444444444444444444444444455555555 444444444444


Q ss_pred             ccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        83 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      ..+++|+.+++++|.++.++...|..+++|+.+++++|.++.+|
T Consensus       154 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (270)
T 2o6q_A          154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP  197 (270)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence            44455555555555555554444445555555555555554443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.85  E-value=1.5e-20  Score=118.92  Aligned_cols=122  Identities=31%  Similarity=0.544  Sum_probs=107.5

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      +++..|..+++|+.|++++|.+.  .+++..|..++.|++|++++|.++.++...|..+++|+.++++ +|.+..+++..
T Consensus        52 ~~~~~~~~l~~L~~L~l~~n~l~--~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~  128 (270)
T 2o6q_A           52 LPSKAFHRLTKLRLLYLNDNKLQ--TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD-RNQLKSLPPRV  128 (270)
T ss_dssp             CCTTSSSSCTTCCEEECCSSCCS--CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC-SSCCCCCCTTT
T ss_pred             eCHHHhcCCCCCCEEECCCCccC--eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC-CCccCeeCHHH
Confidence            56677888999999999999876  8888888889999999999999998888778888999999999 99999888887


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      |..+++|+.+++++|.++.++...|..+++|+.|++++|.++.++
T Consensus       129 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A          129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence            888899999999999999888887888899999999999888765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.85  E-value=1.4e-20  Score=116.03  Aligned_cols=113  Identities=29%  Similarity=0.456  Sum_probs=105.9

Q ss_pred             ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031          11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK   90 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~   90 (127)
                      ..++.|++++|.+.  .+++..|..++.|+.|++++|+++.+.+..|..+++|+.|+++ +|.++.+++..|.++++|+.
T Consensus        32 ~~l~~L~l~~n~i~--~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~f~~l~~L~~  108 (220)
T 2v9t_B           32 ETITEIRLEQNTIK--VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY-GNKITELPKSLFEGLFSLQL  108 (220)
T ss_dssp             TTCCEEECCSSCCC--EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC-SSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCEEECCCCcCC--CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC-CCcCCccCHhHccCCCCCCE
Confidence            57999999999987  8999889999999999999999999988889999999999999 99999999998899999999


Q ss_pred             EEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        91 l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      +++++|.++.++...|..+++|+.|++++|.++.++
T Consensus       109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  144 (220)
T 2v9t_B          109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA  144 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence            999999999998877899999999999999998876

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=2.2e-20  Score=114.00  Aligned_cols=119  Identities=29%  Similarity=0.523  Sum_probs=89.3

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      +++.+|..+++|+.|++++|++.  .+++..|..++.|+++++++|+++.+++..|..+++|+.++++ +|.+..+++..
T Consensus        43 ~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~  119 (208)
T 2o6s_A           43 LPNGVFDELTSLTQLYLGGNKLQ--SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN-TNQLQSLPDGV  119 (208)
T ss_dssp             CCTTTTTTCTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTT
T ss_pred             CChhhhcccccCcEEECCCCccC--ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC-CCcCcccCHhH
Confidence            45666777777888888877765  7777777777778888888777777776666777778888887 77777777766


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~  123 (127)
                      |..+++|+.+++++|.++.++...|..+++|+.+++++|++.
T Consensus       120 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          120 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence            667777788888877777777766677777888888777654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.85  E-value=1.6e-20  Score=115.74  Aligned_cols=118  Identities=20%  Similarity=0.378  Sum_probs=97.2

Q ss_pred             chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031           3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF   82 (127)
Q Consensus         3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~   82 (127)
                      +.++|..+++|+.|++++|.+.  .+++..|..++.|++|++++|.++.+++..|..+++|+.|+++ +|.+..+++..|
T Consensus        49 ~~~~~~~l~~L~~L~L~~N~i~--~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~  125 (220)
T 2v70_A           49 ATGIFKKLPQLRKINFSNNKIT--DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR-SNRITCVGNDSF  125 (220)
T ss_dssp             CCCCGGGCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT-TSCCCCBCTTSS
T ss_pred             chhhhccCCCCCEEECCCCcCC--EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC-CCcCCeECHhHc
Confidence            3456778888888888888876  7887778888888888888888888888778888888888888 888888877777


Q ss_pred             ccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031          83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        83 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~  123 (127)
                      ..+++|+.+++++|.++.++...|..+++|+.+++++|++.
T Consensus       126 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          126 IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            78888888888888888886666788888888888888764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=2.7e-20  Score=116.61  Aligned_cols=120  Identities=28%  Similarity=0.509  Sum_probs=111.6

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      ++++.|..+++|+.|++++|.+.  .+++..|..+++|++|++++|+++.+++..|..+++|+.|+++ +|.+..+++..
T Consensus        74 ~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~  150 (251)
T 3m19_A           74 LSAGVFDDLTELGTLGLANNQLA--SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN-TNQLQSIPAGA  150 (251)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTT
T ss_pred             cCHhHhccCCcCCEEECCCCccc--ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc-CCcCCccCHHH
Confidence            56778899999999999999987  8999999999999999999999999998888899999999999 99999999888


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      |..+++|+.+++++|.++.++...|..+++|+.+++++|++..
T Consensus       151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            8889999999999999999998778899999999999998864

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.84  E-value=1.9e-20  Score=122.74  Aligned_cols=122  Identities=21%  Similarity=0.344  Sum_probs=102.2

Q ss_pred             Cchhhhc-CCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecch
Q psy8031           2 FPKDLFA-EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST   80 (127)
Q Consensus         2 i~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~   80 (127)
                      +++..|. .+++|+.|++++|++.  .+++..|..++.|++|++++|+++.+++..|..+++|+.|+++ +|.+..+++.
T Consensus        54 l~~~~~~~~l~~L~~L~L~~N~i~--~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-~N~i~~~~~~  130 (361)
T 2xot_A           54 LRAEWTPTRLTNLHSLLLSHNHLN--FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY-NNHIVVVDRN  130 (361)
T ss_dssp             ECTTSSSSCCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTT
T ss_pred             cChhhhhhcccccCEEECCCCcCC--ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC-CCcccEECHH
Confidence            3556666 7888999999999876  8888888888999999999999988888778888899999999 8988888877


Q ss_pred             hhccCCCCcEEEecCccccccChhhh---cCCccccEEeccCCcccccC
Q psy8031          81 LFRDCKKLVKLELQRNKLKYLPENLF---ESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        81 ~~~~~~~l~~l~l~~n~~~~~~~~~~---~~~~~l~~l~l~~n~i~~~~  126 (127)
                      .|..+++|+.|++++|.++.+|...|   ..+++|+.|++++|.++.+|
T Consensus       131 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          131 AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred             HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence            78888899999999999988888776   45788999999999888765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.84  E-value=1.3e-20  Score=130.24  Aligned_cols=121  Identities=24%  Similarity=0.358  Sum_probs=70.5

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      ||++.|.++++|+.|++++|++.  .+++++|..+++|++|++++|+++.+++.+|.++++|+.|+++ +|.++.+++..
T Consensus        67 l~~~~f~~l~~L~~L~Ls~N~i~--~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls-~N~l~~l~~~~  143 (635)
T 4g8a_A           67 LGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV-ETNLASLENFP  143 (635)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT-TSCCCCSTTCC
T ss_pred             CCHHHHhCCCCCCEEECCCCcCC--CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC-CCcCCCCChhh
Confidence            34555666666666666666554  5666556666666666666666666665556666666666666 66666665555


Q ss_pred             hccCCCCcEEEecCccccccC-hhhhcCCccccEEeccCCccccc
Q psy8031          82 FRDCKKLVKLELQRNKLKYLP-ENLFESLKELYTLNLKNNQLENI  125 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~-~~~~~~~~~l~~l~l~~n~i~~~  125 (127)
                      |..+++|+.+++++|.++.++ ...++.+++|+.+++++|.++.+
T Consensus       144 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence            555666666666666555332 12235556666666666655543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.84  E-value=4.8e-20  Score=114.18  Aligned_cols=117  Identities=26%  Similarity=0.454  Sum_probs=76.1

Q ss_pred             chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031           3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF   82 (127)
Q Consensus         3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~   82 (127)
                      ++..|..+++|+.|++++|++.  .+++..|..++.|+.|++++|+++.+++..|..+++|+.|+++ +|.+..+|... 
T Consensus        56 ~~~~~~~l~~L~~L~L~~N~l~--~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls-~N~l~~lp~~~-  131 (229)
T 3e6j_A           56 EPGVFDSLINLKELYLGSNQLG--ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC-CNKLTELPRGI-  131 (229)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCSCCTTG-
T ss_pred             CHHHhhCccCCcEEECCCCCCC--CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEecc-CCcccccCccc-
Confidence            4455666666666666666654  6666666666666666666666666666656666666666666 66666665543 


Q ss_pred             ccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031          83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        83 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~  123 (127)
                      ..+++|+.+++++|.++.++...|..+++|+.+++++|++.
T Consensus       132 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          132 ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            55666667777766666666655566666777777666554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.84  E-value=2.3e-20  Score=129.06  Aligned_cols=112  Identities=21%  Similarity=0.278  Sum_probs=105.9

Q ss_pred             ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031          11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK   90 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~   90 (127)
                      +.++.|++++|.+.  .+++..|..++.|++|++++|+++.+++.+|..+++|+.|+++ +|.++.+++.+|.++++|+.
T Consensus        52 ~~~~~LdLs~N~i~--~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls-~N~l~~l~~~~f~~L~~L~~  128 (635)
T 4g8a_A           52 FSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQK  128 (635)
T ss_dssp             TTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECGGGGTTCTTCCE
T ss_pred             cCCCEEEeeCCCCC--CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEcc-CCcCCCCCHHHhcCCCCCCE
Confidence            46899999999987  9999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             EEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031          91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENI  125 (127)
Q Consensus        91 l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~  125 (127)
                      +++++|.++.++...|+++++|+.|++++|.++.+
T Consensus       129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~  163 (635)
T 4g8a_A          129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF  163 (635)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred             EECCCCcCCCCChhhhhcCcccCeeccccCccccC
Confidence            99999999999988789999999999999998764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.83  E-value=6.1e-20  Score=113.72  Aligned_cols=118  Identities=31%  Similarity=0.461  Sum_probs=107.2

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      ||.++   .++++.|++++|.+.  .+++..|..++.|+.|++++|+++.++...|..+++|+.|+++ +|.++.+++..
T Consensus        34 ip~~~---~~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~  107 (229)
T 3e6j_A           34 VPAGI---PTNAQILYLHDNQIT--KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG-TNQLTVLPSAV  107 (229)
T ss_dssp             CCSCC---CTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTT
T ss_pred             cCCCC---CCCCCEEEcCCCccC--ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC-CCcCCccChhH
Confidence            45544   367999999999987  8888888999999999999999999998888999999999999 99999999988


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      |..+++|+.+++++|.++.+|..+ ..+++|+.|++++|.++.++
T Consensus       108 ~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~L~~N~l~~~~  151 (229)
T 3e6j_A          108 FDRLVHLKELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSIP  151 (229)
T ss_dssp             TTTCTTCCEEECCSSCCCSCCTTG-GGCTTCSEEECCSSCCCCCC
T ss_pred             hCcchhhCeEeccCCcccccCccc-ccCCCCCEEECCCCcCCccC
Confidence            888999999999999999998874 78999999999999998876

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=1.4e-19  Score=110.50  Aligned_cols=114  Identities=30%  Similarity=0.530  Sum_probs=105.6

Q ss_pred             CccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031          10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV   89 (127)
Q Consensus        10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~   89 (127)
                      .++++.|++++|++.  .+++..|..++.|+++++++|+++.+++..|..+++|+.++++ +|.++.+++..|..+++|+
T Consensus        27 ~~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~  103 (208)
T 2o6s_A           27 PAQTTYLDLETNSLK--SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS-TNQLQSLPNGVFDKLTQLK  103 (208)
T ss_dssp             CTTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCcEEEcCCCccC--cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC-CCcCCccCHhHhcCccCCC
Confidence            457999999999987  8998888999999999999999999998888899999999999 9999999988888899999


Q ss_pred             EEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          90 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        90 ~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      .+++++|.++.++...|..+++|+.+++++|.++.++
T Consensus       104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  140 (208)
T 2o6s_A          104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP  140 (208)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC
Confidence            9999999999999887889999999999999998776

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.82  E-value=1.1e-19  Score=109.96  Aligned_cols=115  Identities=24%  Similarity=0.386  Sum_probs=103.1

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      ||.+++   ..++.|++++|.+.  .+| ..|..++.|+.|++++|+++.+++..|..+++|+.|+++ +|.++.+++..
T Consensus        25 ip~~~~---~~l~~L~L~~n~i~--~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls-~N~l~~i~~~~   97 (193)
T 2wfh_A           25 LPKGIP---RDVTELYLDGNQFT--LVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS-YNRLRCIPPRT   97 (193)
T ss_dssp             CCSCCC---TTCCEEECCSSCCC--SCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCBCCTTT
T ss_pred             CCCCCC---CCCCEEECCCCcCc--hhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC-CCccCEeCHHH
Confidence            555553   47899999999986  888 467899999999999999999998889999999999999 99999999888


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~  123 (127)
                      |.++++|+.+++++|.++.++...|..+++|+.+++++|++.
T Consensus        98 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           98 FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             hCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            899999999999999999999988889999999999999764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.82  E-value=2.3e-19  Score=113.59  Aligned_cols=116  Identities=28%  Similarity=0.494  Sum_probs=54.7

Q ss_pred             hhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhc
Q psy8031           4 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR   83 (127)
Q Consensus         4 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~   83 (127)
                      +..|..+++|+.|++++|++.  .+++..|..++.|+++++++|.++.+++..|..+++|+.++++ +|.++.+++..|.
T Consensus       102 ~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~  178 (272)
T 3rfs_A          102 NGVFDKLTNLKELVLVENQLQ--SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS-YNQLQSLPEGVFD  178 (272)
T ss_dssp             TTTTTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTT
T ss_pred             hhHhcCCcCCCEEECCCCcCC--ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC-CCCcCccCHHHhc
Confidence            334444444444444444433  4444444444444444444444444444444444445555554 4444444444444


Q ss_pred             cCCCCcEEEecCccccccChhhhcCCccccEEeccCCcc
Q psy8031          84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL  122 (127)
Q Consensus        84 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i  122 (127)
                      .+++|+.+++++|.++.++...|..+++|+.+++++|++
T Consensus       179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence            444455555555544444444444444555555554443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.82  E-value=2.5e-19  Score=106.87  Aligned_cols=112  Identities=29%  Similarity=0.487  Sum_probs=102.9

Q ss_pred             CccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031          10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV   89 (127)
Q Consensus        10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~   89 (127)
                      .+.++.|++++|++.  .+++..|..++.|+++++++|+++.+++..|..+++|+.++++ +|.++.+++..|..+++|+
T Consensus        27 ~~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~l~~L~  103 (177)
T 2o6r_A           27 PSSATRLELESNKLQ--SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH-ENKLQSLPNGVFDKLTQLK  103 (177)
T ss_dssp             CTTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCcEEEeCCCccc--EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC-CCCccccCHHHhhCCcccC
Confidence            367999999999976  8898888999999999999999999998888899999999999 9999999988888899999


Q ss_pred             EEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031          90 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        90 ~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      .+++++|.++.++...|..+++|+.+++++|++..
T Consensus       104 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             EEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            99999999999999888889999999999998764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.81  E-value=6.9e-20  Score=113.95  Aligned_cols=120  Identities=20%  Similarity=0.282  Sum_probs=76.6

Q ss_pred             CchhhhcCCccceEEEecCCc-CcccccCccccCCCCCCcEEEecC-CcccccChhhhcCCCCCcEEEecCCCCCeeecc
Q psy8031           2 FPKDLFAEMKYLQVIKISYHK-DSLKELPSGLFANLPLLNTVILGE-SSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS   79 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~   79 (127)
                      ++++.|.++++|+.|++++|. +.  .+++..|..+++|+++++++ |+++.+++..|..+++|+.++++ +|.++.++.
T Consensus        46 i~~~~~~~l~~L~~L~l~~n~~l~--~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~-~n~l~~lp~  122 (239)
T 2xwt_C           46 IPSHAFSNLPNISRIYVSIDVTLQ--QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF-NTGLKMFPD  122 (239)
T ss_dssp             ECTTTTTTCTTCCEEEEECCSSCC--EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEE-EECCCSCCC
T ss_pred             ECHHHccCCCCCcEEeCCCCCCcc--eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCC-CCCCccccc
Confidence            455566777777777777775 54  66666667777777777776 77777766666666777777776 666655554


Q ss_pred             hhhccCCCCc---EEEecCc-cccccChhhhcCCcccc-EEeccCCcccccC
Q psy8031          80 TLFRDCKKLV---KLELQRN-KLKYLPENLFESLKELY-TLNLKNNQLENIT  126 (127)
Q Consensus        80 ~~~~~~~~l~---~l~l~~n-~~~~~~~~~~~~~~~l~-~l~l~~n~i~~~~  126 (127)
                        |..+++++   .+++++| .++.++...|..+++|+ .+++++|.++.+|
T Consensus       123 --~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~  172 (239)
T 2xwt_C          123 --LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ  172 (239)
T ss_dssp             --CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC
T ss_pred             --cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC
Confidence              44445554   5666665 56655555555566666 6666666655544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.81  E-value=3.9e-19  Score=112.55  Aligned_cols=118  Identities=33%  Similarity=0.566  Sum_probs=95.4

Q ss_pred             hhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccC
Q psy8031           6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC   85 (127)
Q Consensus         6 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~   85 (127)
                      .+..+++|+.|++++|.+.  .+++..|..++.|+++++++|+++.+++..|..+++|+.++++ +|.+..+++..|..+
T Consensus        80 ~l~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l  156 (272)
T 3rfs_A           80 ALKELTNLTYLILTGNQLQ--SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA-HNQLQSLPKGVFDKL  156 (272)
T ss_dssp             GGTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTC
T ss_pred             hhcCCCCCCEEECCCCccC--ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECC-CCccCccCHHHhccC
Confidence            4567788888888888766  7777777888888888888888888877777778888888888 888888877777778


Q ss_pred             CCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          86 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        86 ~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      ++|+.+++++|.++.++...|+.+++|+.+++++|.++.++
T Consensus       157 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (272)
T 3rfs_A          157 TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP  197 (272)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence            88888888888888887776778888888888888887765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.81  E-value=4.2e-19  Score=112.90  Aligned_cols=117  Identities=28%  Similarity=0.456  Sum_probs=53.1

Q ss_pred             hhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhcc
Q psy8031           5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD   84 (127)
Q Consensus         5 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~   84 (127)
                      ..|..+++|+.|++++|.+.  .+++..|..+++|+++++++|.++.++...|..+++|+.++++ +|.+..++...|..
T Consensus        99 ~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~  175 (285)
T 1ozn_A           99 ATFHGLGRLHTLHLDRCGLQ--ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH-GNRISSVPERAFRG  175 (285)
T ss_dssp             TTTTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCEECTTTTTT
T ss_pred             HHhcCCcCCCEEECCCCcCC--EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECC-CCcccccCHHHhcC
Confidence            33444444444444444433  3433444444444444444444444444434444444444444 44444444443444


Q ss_pred             CCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031          85 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        85 ~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      +++|+.+++++|.++.+....|..+++|+.+++++|.++.
T Consensus       176 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  215 (285)
T 1ozn_A          176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA  215 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence            4444444444444444433333444444444444444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=3.7e-19  Score=109.61  Aligned_cols=113  Identities=21%  Similarity=0.462  Sum_probs=102.5

Q ss_pred             ccceEEEecCCcCccccc-CccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031          11 KYLQVIKISYHKDSLKEL-PSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV   89 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~-~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~   89 (127)
                      ..++.|++++|.+.  .+ +...|..++.|+.|++++|+++.+++..|..+++|+.|+++ +|.+..+++..|.++++|+
T Consensus        32 ~~~~~L~L~~N~l~--~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~  108 (220)
T 2v70_A           32 QYTAELRLNNNEFT--VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT-SNRLENVQHKMFKGLESLK  108 (220)
T ss_dssp             TTCSEEECCSSCCC--EECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCCCCGGGGTTCSSCC
T ss_pred             CCCCEEEcCCCcCC--ccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC-CCccCccCHhHhcCCcCCC
Confidence            34689999999986  66 45678899999999999999999998889999999999999 9999999998889999999


Q ss_pred             EEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          90 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        90 ~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      .+++++|.++.++...|..+++|+.|++++|.++.++
T Consensus       109 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  145 (220)
T 2v70_A          109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA  145 (220)
T ss_dssp             EEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred             EEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence            9999999999997777889999999999999998873

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.80  E-value=4.6e-19  Score=112.75  Aligned_cols=118  Identities=24%  Similarity=0.361  Sum_probs=55.4

Q ss_pred             hhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCc-ccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031           4 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS-IAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF   82 (127)
Q Consensus         4 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~   82 (127)
                      +..|..+++|+.|++++|.+.  .+++..|..++.|+++++++|. ++.+++..|..+++|+.++++ +|.+..+++..|
T Consensus        49 ~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~  125 (285)
T 1ozn_A           49 AASFRACRNLTILWLHSNVLA--RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLF  125 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTT
T ss_pred             HHHcccCCCCCEEECCCCccc--eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECC-CCcCCEECHhHh
Confidence            344455555555555555443  4444444445555555555553 444444344444445555554 444444444334


Q ss_pred             ccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031          83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        83 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      ..+++|+.+++++|.++.++...|+.+++|+.+++++|.+++
T Consensus       126 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  167 (285)
T 1ozn_A          126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS  167 (285)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence            444444444444444444444333444444444444444443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.80  E-value=6.7e-19  Score=112.49  Aligned_cols=113  Identities=29%  Similarity=0.414  Sum_probs=74.2

Q ss_pred             CccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031          10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV   89 (127)
Q Consensus        10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~   89 (127)
                      +++|+.|++++|++.  .+|. .+..++.|++|++++|+++.+++..|..+++|+.|+++ +|.+..+++..|..+++|+
T Consensus        76 l~~L~~L~Ls~N~l~--~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~  151 (290)
T 1p9a_G           76 LPVLGTLDLSHNQLQ--SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-GNELKTLPPGLLTPTPKLE  151 (290)
T ss_dssp             CTTCCEEECCSSCCS--SCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCC
T ss_pred             CCcCCEEECCCCcCC--cCch-hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC-CCCCCccChhhcccccCCC
Confidence            334444444444433  4443 23556667777777777777666666677777777777 7777777766666667777


Q ss_pred             EEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          90 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        90 ~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      .+++++|.++.++..+|..+++|+.+++++|.++.+|
T Consensus       152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip  188 (290)
T 1p9a_G          152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP  188 (290)
T ss_dssp             EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC
Confidence            7777777777777766666777777777777777665

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.80  E-value=3.4e-19  Score=117.71  Aligned_cols=121  Identities=25%  Similarity=0.466  Sum_probs=105.8

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      +|+.+|..+++|+.|++++|.+.  .+++..|..++.|++|++++|.++.+++..|..+++|+.++++ +|.+..++...
T Consensus        60 l~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~  136 (390)
T 3o6n_A           60 LPAALLDSFRQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE-RNDLSSLPRGI  136 (390)
T ss_dssp             ECTHHHHHCCCCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTT
T ss_pred             CChhHhcccccCcEEECCCCccc--ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC-CCccCcCCHHH
Confidence            57778888999999999999876  8888788899999999999999998888778888999999999 99999888887


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI  125 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~  125 (127)
                      |..+++|+.+++++|.++.++...|..+++|+.|++++|.++.+
T Consensus       137 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence            78888999999999999888777778889999999999988765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.80  E-value=5.4e-19  Score=106.80  Aligned_cols=116  Identities=22%  Similarity=0.392  Sum_probs=102.0

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCcc-ccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecch
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSG-LFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST   80 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~-~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~   80 (127)
                      ||..++.   .++.|++++|.+.  .+++. .|..++.|++|++++|+++.+.+..|..+++|+.++++ +|.+..+++.
T Consensus        23 ip~~~~~---~l~~L~l~~n~i~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~   96 (192)
T 1w8a_A           23 IPRDIPL---HTTELLLNDNELG--RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG-ENKIKEISNK   96 (192)
T ss_dssp             CCSCCCT---TCSEEECCSCCCC--SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC-SCCCCEECSS
T ss_pred             CccCCCC---CCCEEECCCCcCC--ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC-CCcCCccCHH
Confidence            5554433   7899999999976  77764 57899999999999999999988789999999999999 9999999988


Q ss_pred             hhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031          81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        81 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~  123 (127)
                      .|.++++|+.+++++|.++.++...|..+++|+.+++++|+++
T Consensus        97 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            8888999999999999999887766788999999999999876

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.80  E-value=6.7e-19  Score=115.47  Aligned_cols=119  Identities=25%  Similarity=0.376  Sum_probs=107.8

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccC-CCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecch
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFA-NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST   80 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~   80 (127)
                      ||..+.   ..++.|++++|.+.  .+++..|. .+++|+.|++++|+++.+++..|..+++|+.|+++ +|.+..+++.
T Consensus        33 iP~~~~---~~l~~L~Ls~N~l~--~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls-~N~l~~~~~~  106 (361)
T 2xot_A           33 VPQSLP---SYTALLDLSHNNLS--RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS-SNHLHTLDEF  106 (361)
T ss_dssp             CCSSCC---TTCSEEECCSSCCC--EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTT
T ss_pred             cCccCC---CCCCEEECCCCCCC--ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC-CCcCCcCCHH
Confidence            455442   34889999999987  89988887 89999999999999999998889999999999999 9999999998


Q ss_pred             hhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        81 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      .|..+.+|+.|++++|.++.++...|..+++|+.|++++|.++.+|
T Consensus       107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~  152 (361)
T 2xot_A          107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP  152 (361)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred             HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence            8999999999999999999998877899999999999999999876

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.80  E-value=7.9e-19  Score=117.66  Aligned_cols=121  Identities=26%  Similarity=0.452  Sum_probs=82.2

Q ss_pred             chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031           3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF   82 (127)
Q Consensus         3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~   82 (127)
                      ++..|.++++|+.|++++|.+.  .+++..|.++++|++|++++|+++.++...|..+++|+.|+++ +|.+..++...|
T Consensus        80 ~~~~~~~l~~L~~L~Ls~n~i~--~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~i~~~~~~~~  156 (440)
T 3zyj_A           80 KVNSFKHLRHLEILQLSRNHIR--TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR-NNPIESIPSYAF  156 (440)
T ss_dssp             CTTTTSSCSSCCEEECCSSCCC--EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC-SCCCCEECTTTT
T ss_pred             CHHHhhCCCCCCEEECCCCcCC--ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC-CCcccccCHHHh
Confidence            4556677777777777777765  6676677777777777777777777776667777777777777 777777766666


Q ss_pred             ccCCCCcEEEecC-ccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          83 RDCKKLVKLELQR-NKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        83 ~~~~~l~~l~l~~-n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      ..+++|+.+++++ +.+..++...|.++++|+.|++++|.++.+|
T Consensus       157 ~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~  201 (440)
T 3zyj_A          157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP  201 (440)
T ss_dssp             TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred             hhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence            6666666666665 3455666555566666666666666665554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.79  E-value=4.7e-19  Score=110.21  Aligned_cols=120  Identities=19%  Similarity=0.308  Sum_probs=73.4

Q ss_pred             chhhhcCCccceEEEecC-CcCcccccCccccCCCCCCcE-------------------------EEecCC-cccccChh
Q psy8031           3 PKDLFAEMKYLQVIKISY-HKDSLKELPSGLFANLPLLNT-------------------------VILGES-SIAELPSD   55 (127)
Q Consensus         3 ~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~~~l~~-------------------------l~l~~n-~~~~~~~~   55 (127)
                      ++++|.++++|+.|++++ |.+.  .+++..|..+++|++                         +++++| .++.+++.
T Consensus        72 ~~~~f~~l~~L~~L~l~~~n~l~--~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~  149 (239)
T 2xwt_C           72 ESHSFYNLSKVTHIEIRNTRNLT--YIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN  149 (239)
T ss_dssp             CTTTEESCTTCCEEEEEEETTCC--EECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTT
T ss_pred             CHhHcCCCcCCcEEECCCCCCee--EcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcc
Confidence            344455555555555555 5443  455444445555554                         455555 55555555


Q ss_pred             hhcCCCCCc-EEEecCCCCCeeecchhhccCCCCcEEEecCcc-ccccChhhhcCC-ccccEEeccCCcccccC
Q psy8031          56 LFWNSTNIT-NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNK-LKYLPENLFESL-KELYTLNLKNNQLENIT  126 (127)
Q Consensus        56 ~~~~~~~l~-~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~~~-~~l~~l~l~~n~i~~~~  126 (127)
                      .|..+++++ .++++ +|.++.++...|.. .+|+.+++++|. ++.++...|..+ ++|+.+++++|+++.+|
T Consensus       150 ~~~~l~~L~~~L~l~-~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~  221 (239)
T 2xwt_C          150 AFQGLCNETLTLKLY-NNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP  221 (239)
T ss_dssp             TTTTTBSSEEEEECC-SCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred             cccchhcceeEEEcC-CCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC
Confidence            566666677 77777 66666666666554 567777777773 777766666666 77777777777777665

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.79  E-value=1e-18  Score=117.45  Aligned_cols=121  Identities=27%  Similarity=0.452  Sum_probs=86.6

Q ss_pred             chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031           3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF   82 (127)
Q Consensus         3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~   82 (127)
                      ++..|.++++|+.|++++|.+.  .+++..|.++++|++|++++|.++.+++..|..+++|+.|+++ +|.+..++...|
T Consensus        91 ~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~  167 (452)
T 3zyi_A           91 QADTFRHLHHLEVLQLGRNSIR--QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR-NNPIESIPSYAF  167 (452)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC-SCCCCEECTTTT
T ss_pred             CHHHcCCCCCCCEEECCCCccC--CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC-CCCcceeCHhHH
Confidence            4566777777788888777765  6776777777777777777777777777767777777777777 777777777666


Q ss_pred             ccCCCCcEEEecC-ccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          83 RDCKKLVKLELQR-NKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        83 ~~~~~l~~l~l~~-n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      ..+++|+.+++++ +.+..++...|..+++|+.|++++|.++.+|
T Consensus       168 ~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~  212 (452)
T 3zyi_A          168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP  212 (452)
T ss_dssp             TTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred             hcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence            6667777777766 4566666655666666777777766666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.79  E-value=1e-18  Score=111.69  Aligned_cols=119  Identities=27%  Similarity=0.365  Sum_probs=103.0

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      +++..|..+++|+.|++++|.+.  .++..  ..++.|++|++++|+++.++.. +..+++|+.|+++ +|.++.+++..
T Consensus        46 ~~~~~~~~l~~L~~L~L~~n~l~--~~~~~--~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~l~-~N~l~~l~~~~  119 (290)
T 1p9a_G           46 FSLATLMPYTRLTQLNLDRAELT--KLQVD--GTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVS-FNRLTSLPLGA  119 (290)
T ss_dssp             EEGGGGTTCTTCCEEECTTSCCC--EEECC--SCCTTCCEEECCSSCCSSCCCC-TTTCTTCCEEECC-SSCCCCCCSST
T ss_pred             cCHHHhhcCCCCCEEECCCCccC--cccCC--CCCCcCCEEECCCCcCCcCchh-hccCCCCCEEECC-CCcCcccCHHH
Confidence            34567788888888888888876  66653  6788899999999999888764 6778999999999 99999999888


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      |.++++|+.+++++|.++.++..+|..+++|+.|++++|.++++|
T Consensus       120 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  164 (290)
T 1p9a_G          120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (290)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             HcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC
Confidence            888999999999999999999988889999999999999998876

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.79  E-value=1e-18  Score=110.64  Aligned_cols=120  Identities=27%  Similarity=0.383  Sum_probs=87.9

Q ss_pred             chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031           3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF   82 (127)
Q Consensus         3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~   82 (127)
                      ++..|..+++|+.|++++|++.  .+++..|..++.|+++++++|.++.+++..|..+++|+.++++ +|.+..++...+
T Consensus        44 ~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~  120 (276)
T 2z62_A           44 GSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV-ETNLASLENFPI  120 (276)
T ss_dssp             CTTTTTTCTTCSEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TSCCCCSTTCCC
T ss_pred             CHhHhccccCCcEEECCCCcCC--ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC-CCCccccCchhc
Confidence            4456677777888888888765  7777677777788888888887777776667777778888887 777777766556


Q ss_pred             ccCCCCcEEEecCccccc--cChhhhcCCccccEEeccCCcccccC
Q psy8031          83 RDCKKLVKLELQRNKLKY--LPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        83 ~~~~~l~~l~l~~n~~~~--~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      ..+++|+.+++++|.++.  +|.. +..+++|+.+++++|.++.++
T Consensus       121 ~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A          121 GHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             TTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEEC
T ss_pred             ccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCC
Confidence            667778888888887775  3444 567777888888887776653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.79  E-value=9.6e-19  Score=121.12  Aligned_cols=122  Identities=25%  Similarity=0.463  Sum_probs=107.5

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      +|+.+|..+++|+.|++++|.+.  .+++..|..++.|++|++++|.++.+++..|+.+++|+.|+++ +|.+..+++..
T Consensus        66 lp~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~  142 (597)
T 3oja_B           66 LPAALLDSFRQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE-RNDLSSLPRGI  142 (597)
T ss_dssp             ECTHHHHHCCCCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTT
T ss_pred             cCHHHHccCCCCcEEECCCCCCC--CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee-CCCCCCCCHHH
Confidence            57788888999999999999876  8888788999999999999999999888888889999999999 99999998888


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      |..+++|+.+++++|.++.++...|+.+++|+.|++++|.++.++
T Consensus       143 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  187 (597)
T 3oja_B          143 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD  187 (597)
T ss_dssp             TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred             hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence            888899999999999998888777788899999999999887653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.78  E-value=1.9e-18  Score=115.87  Aligned_cols=119  Identities=21%  Similarity=0.348  Sum_probs=101.8

Q ss_pred             chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031           3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF   82 (127)
Q Consensus         3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~   82 (127)
                      ++..|..+++|+.|++++|.+.  .+++..|..++.|++|++++|.++.+++..|..+++|+.++++ +|.+..+++..|
T Consensus       291 ~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~  367 (455)
T 3v47_A          291 LKSVFSHFTDLEQLTLAQNEIN--KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS-YNHIRALGDQSF  367 (455)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC-SSCCCEECTTTT
T ss_pred             chhhcccCCCCCEEECCCCccc--ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC-CCcccccChhhc
Confidence            3556788889999999999876  7777777888999999999999988887778888999999999 999988877777


Q ss_pred             ccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031          83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        83 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      ..+++|+.+++++|.++.++...|..+++|+.+++++|+++.
T Consensus       368 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          368 LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence            888899999999999998888777888899999999998764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.78  E-value=1.4e-18  Score=117.35  Aligned_cols=117  Identities=27%  Similarity=0.408  Sum_probs=56.2

Q ss_pred             hhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhc
Q psy8031           4 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR   83 (127)
Q Consensus         4 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~   83 (127)
                      +..|..+++|+.|++++|.+.  .+++..|..+++|++|++++|.++.++...|..+++|+.|+++ +|.+..+++..|.
T Consensus        49 ~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~  125 (477)
T 2id5_A           49 QDEFASFPHLEELELNENIVS--AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS-ENKIVILLDYMFQ  125 (477)
T ss_dssp             TTTTTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT-TSCCCEECTTTTT
T ss_pred             HhHccCCCCCCEEECCCCccC--EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC-CCccccCChhHcc
Confidence            344555555555555555543  4444444555555555555555555554444445555555555 5544444444444


Q ss_pred             cCCCCcEEEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031          84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        84 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~  123 (127)
                      .+++|+.+++++|.+..++...|..+++|+.|++++|.++
T Consensus       126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  165 (477)
T 2id5_A          126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT  165 (477)
T ss_dssp             TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred             ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence            4444444444444444443333344444444444444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.77  E-value=4.5e-18  Score=114.82  Aligned_cols=122  Identities=20%  Similarity=0.344  Sum_probs=109.3

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      ++++.|.++++|+.|++++|.+.  .+++..|..+++|++|++++|.++.+.+..|..+++|+.|+++ +|.+..+++..
T Consensus        71 ~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~  147 (477)
T 2id5_A           71 VEPGAFNNLFNLRTLGLRSNRLK--LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG-DNDLVYISHRA  147 (477)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCC--SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEEC-CTTCCEECTTS
T ss_pred             eChhhhhCCccCCEEECCCCcCC--ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECC-CCccceeChhh
Confidence            35678899999999999999976  8999888999999999999999998888788899999999999 99999998888


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      |.++++|+.+++++|.++.++...|..+++|+.+++++|.+..++
T Consensus       148 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~  192 (477)
T 2id5_A          148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR  192 (477)
T ss_dssp             STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred             ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence            888999999999999999999887888999999999998877654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.77  E-value=4.8e-18  Score=100.85  Aligned_cols=107  Identities=27%  Similarity=0.405  Sum_probs=96.2

Q ss_pred             ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031          11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK   90 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~   90 (127)
                      +..+.++++++++.  .+|..+   .+.++.|++++|+++.+++..|..+++|+.|+++ +|.++.+++..|..+++|+.
T Consensus         9 C~~~~l~~s~n~l~--~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~f~~l~~L~~   82 (170)
T 3g39_A            9 CSGTTVDCSGKSLA--SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLD-NNQLTVLPAGVFDKLTQLTQ   82 (170)
T ss_dssp             EETTEEECTTSCCS--SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCEEEeCCCCcC--ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECC-CCCcCccChhhccCCCCCCE
Confidence            35678999999876  888766   4789999999999999988888999999999999 99999999988888999999


Q ss_pred             EEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031          91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        91 l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~  123 (127)
                      +++++|.++.++...|..+++|+.+++++|++.
T Consensus        83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            999999999999887889999999999999875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.76  E-value=6.5e-18  Score=113.24  Aligned_cols=119  Identities=24%  Similarity=0.384  Sum_probs=92.1

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCC-CCCeeecch
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGH-KKLTSLPST   80 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~-n~~~~~~~~   80 (127)
                      ++++.|.++++|+.|++++|.+.  .+++..|..+++|++|++++|.++.++...|..+++|+.|+++ + +.+..++..
T Consensus       103 i~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~-~~~~l~~i~~~  179 (440)
T 3zyj_A          103 IEIGAFNGLANLNTLELFDNRLT--TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG-ELKRLSYISEG  179 (440)
T ss_dssp             ECGGGGTTCSSCCEEECCSSCCS--SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECC-CCTTCCEECTT
T ss_pred             cChhhccCCccCCEEECCCCcCC--eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCC-CCCCcceeCcc
Confidence            46678888999999999999876  8888888889999999999999988888778888888888888 5 567777777


Q ss_pred             hhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031          81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI  125 (127)
Q Consensus        81 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~  125 (127)
                      .|.++++|+.+++++|.++.+|.  +..+++|+.|++++|.++.+
T Consensus       180 ~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          180 AFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             TTTTCSSCCEEECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEE
T ss_pred             hhhcccccCeecCCCCcCccccc--cCCCcccCEEECCCCccCcc
Confidence            77777777777777777766654  34556666666666665544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.76  E-value=5.5e-18  Score=117.17  Aligned_cols=121  Identities=26%  Similarity=0.338  Sum_probs=98.1

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      +++..|.++++|+.|++++|.+.  .+++..|..++.|++|++++|.++.+++..|..+++|+.++++ +|.+..+++..
T Consensus        47 ~~~~~~~~l~~L~~L~Ls~n~l~--~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~-~n~l~~~~~~~  123 (606)
T 3vq2_A           47 LKSYSFSNFSELQWLDLSRCEIE--TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV-ETKLASLESFP  123 (606)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT-TSCCCCSSSSC
T ss_pred             eChhhccCCccCcEEeCCCCccc--ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc-CCccccccccc
Confidence            45567788888888888888876  7877778888888888888888888877778888888888888 88888887666


Q ss_pred             hccCCCCcEEEecCccccc--cChhhhcCCccccEEeccCCcccccC
Q psy8031          82 FRDCKKLVKLELQRNKLKY--LPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~--~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      +..+++|+.+++++|.++.  +|.. |+++++|+.|++++|.++.++
T Consensus       124 ~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~  169 (606)
T 3vq2_A          124 IGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTIT  169 (606)
T ss_dssp             CTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEEC
T ss_pred             cCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecC
Confidence            7788888888888888874  5555 578888888888888877654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.76  E-value=5.9e-18  Score=100.10  Aligned_cols=115  Identities=20%  Similarity=0.218  Sum_probs=86.0

Q ss_pred             hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecc-hhhccC
Q psy8031           7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TLFRDC   85 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~-~~~~~~   85 (127)
                      |..+++|+.|++++|.+.  .+  ..+..++.|+++++++|.++...+..+..+++|+.++++ +|.+..++. ..+..+
T Consensus        45 ~~~l~~L~~L~l~~n~l~--~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~l~~l  119 (168)
T 2ell_A           45 TAEFVNLEFLSLINVGLI--SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS-GNKLKDISTLEPLKKL  119 (168)
T ss_dssp             CGGGGGCCEEEEESSCCC--CC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB-SSSCCSSGGGGGGSSC
T ss_pred             HHhCCCCCEEeCcCCCCC--Ch--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc-CCccCcchhHHHHhcC
Confidence            566778888888888765  55  445778888888888888887444445567888888888 888877653 445677


Q ss_pred             CCCcEEEecCccccccCh---hhhcCCccccEEeccCCcccccC
Q psy8031          86 KKLVKLELQRNKLKYLPE---NLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        86 ~~l~~l~l~~n~~~~~~~---~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      ++|+.+++++|.++.++.   ..+..+++|+.+++++|.+.++|
T Consensus       120 ~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          120 ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             SCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             CCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            788888888888887776   45677888888888888877776

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.75  E-value=1.2e-17  Score=99.51  Aligned_cols=108  Identities=24%  Similarity=0.417  Sum_probs=95.2

Q ss_pred             cceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEE
Q psy8031          12 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL   91 (127)
Q Consensus        12 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l   91 (127)
                      .-+.++++++++.  .+|..+   .+.+++|++++|+++.+++..|..+++|+.|+++ +|.++.+++..|..+++|+.+
T Consensus        13 ~~~~l~~~~n~l~--~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~i~~~~~~~l~~L~~L   86 (174)
T 2r9u_A           13 DQTLVNCQNIRLA--SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFN-SNKLTAIPTGVFDKLTQLTQL   86 (174)
T ss_dssp             CSSEEECCSSCCS--SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCcEEEeCCCCCC--ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECC-CCCCCccChhHhCCcchhhEE
Confidence            3468899999876  888866   3789999999999999988888899999999999 999999998888888999999


Q ss_pred             EecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031          92 ELQRNKLKYLPENLFESLKELYTLNLKNNQLENI  125 (127)
Q Consensus        92 ~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~  125 (127)
                      ++++|.++.++...|..+++|+.+++++|++...
T Consensus        87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            9999999999988788899999999999987643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.75  E-value=3.3e-18  Score=111.71  Aligned_cols=119  Identities=18%  Similarity=0.232  Sum_probs=66.5

Q ss_pred             chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecc-hh
Q psy8031           3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TL   81 (127)
Q Consensus         3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~-~~   81 (127)
                      ++..|..+++|+.|++++|.+.  .+++..|..++.|+++++++|+++.++...|..+++|+.++++ +|.+..++. ..
T Consensus        68 ~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~~  144 (353)
T 2z80_A           68 SNSDLQRCVNLQALVLTSNGIN--TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL-GNPYKTLGETSL  144 (353)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT-TCCCSSSCSSCS
T ss_pred             CHHHhccCCCCCEEECCCCccC--ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC-CCCCcccCchhh
Confidence            3444555666666666666544  5555555556666666666666665555555555666666666 555555554 34


Q ss_pred             hccCCCCcEEEecCc-cccccChhhhcCCccccEEeccCCcccc
Q psy8031          82 FRDCKKLVKLELQRN-KLKYLPENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n-~~~~~~~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      |..+++|+.+++++| .+..++...|..+++|+.+++++|.++.
T Consensus       145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence            455555666666555 3555544444555555555555555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.75  E-value=1.4e-17  Score=111.98  Aligned_cols=118  Identities=23%  Similarity=0.324  Sum_probs=82.3

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCC-CCCeeecch
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGH-KKLTSLPST   80 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~-n~~~~~~~~   80 (127)
                      ++++.|.++++|+.|++++|.+.  .+++..|..+++|++|++++|.++.++...|..+++|+.|+++ + +.+..++..
T Consensus       114 ~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~-~~~~l~~i~~~  190 (452)
T 3zyi_A          114 IEVGAFNGLASLNTLELFDNWLT--VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG-ELKKLEYISEG  190 (452)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCS--BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECC-CCTTCCEECTT
T ss_pred             cChhhccCcccCCEEECCCCcCC--ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCC-CCCCccccChh
Confidence            45677888888889999888876  8888888888888888888888888887777777777777777 5 566666666


Q ss_pred             hhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031          81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        81 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      .|.++++|+.+++++|.++.++.  +..+++|+.|++++|.++.
T Consensus       191 ~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          191 AFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             TTTTCTTCCEEECTTSCCSSCCC--CTTCTTCCEEECTTSCCSE
T ss_pred             hccCCCCCCEEECCCCccccccc--ccccccccEEECcCCcCcc
Confidence            66666666666666665555543  2344444444444444433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.75  E-value=9.5e-18  Score=115.11  Aligned_cols=120  Identities=27%  Similarity=0.394  Sum_probs=91.8

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      +++..|.++++|+.|++++|.+.  .+++..|..+++|++|++++|.++.+++..|..+++|+.++++ +|.+..++...
T Consensus        43 ~~~~~~~~l~~L~~L~Ls~n~i~--~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~  119 (570)
T 2z63_A           43 LGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV-ETNLASLENFP  119 (570)
T ss_dssp             ECTTTTTTCSSCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TSCCCCSTTCS
T ss_pred             cChhHhhCCCCceEEECCCCcCC--ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc-ccccccCCCcc
Confidence            34556777888888888888765  7777777888888888888888887777777778888888888 88887777655


Q ss_pred             hccCCCCcEEEecCccccc--cChhhhcCCccccEEeccCCccccc
Q psy8031          82 FRDCKKLVKLELQRNKLKY--LPENLFESLKELYTLNLKNNQLENI  125 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~--~~~~~~~~~~~l~~l~l~~n~i~~~  125 (127)
                      +..+++|+.+++++|.++.  +|.. |+++++|+.+++++|.++.+
T Consensus       120 ~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A          120 IGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             CTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEE
T ss_pred             ccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCcccee
Confidence            6777888888888887775  4555 57788888888888877654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.75  E-value=2e-17  Score=98.55  Aligned_cols=114  Identities=19%  Similarity=0.225  Sum_probs=92.7

Q ss_pred             hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031           7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK   86 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~   86 (127)
                      |..+.+++.|++++|++.  .++. .....+.++.+++++|.++.+  ..+..+++|+.++++ +|.+..+++..|..++
T Consensus        15 ~~~~~~L~~L~l~~n~l~--~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP--VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVN-NNRICRIGEGLDQALP   88 (176)
T ss_dssp             EECTTSCEEEECTTSCCC--SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECC-SSCCCEECSCHHHHCT
T ss_pred             cCCcCCceEEEeeCCCCc--hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECC-CCcccccCcchhhcCC
Confidence            566788999999999876  6643 434344899999999999887  347788899999999 9999988877777888


Q ss_pred             CCcEEEecCccccccCh-hhhcCCccccEEeccCCcccccC
Q psy8031          87 KLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        87 ~l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      +|+.+++++|.++.++. ..+..+++|+.+++++|+++.+|
T Consensus        89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~  129 (176)
T 1a9n_A           89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK  129 (176)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcH
Confidence            99999999999988876 34578889999999999888765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.75  E-value=8.8e-18  Score=106.40  Aligned_cols=121  Identities=18%  Similarity=0.289  Sum_probs=87.0

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeec-ch
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP-ST   80 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~-~~   80 (127)
                      ++++.|..+++|+.|++++|.+.  .+++..|..+++|+++++++|.++.++...+..+++|+.++++ +|.+..+. +.
T Consensus        67 ~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~l~~  143 (276)
T 2z62_A           67 IEDGAYQSLSHLSTLILTGNPIQ--SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA-HNLIQSFKLPE  143 (276)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC-SSCCCCCCCCG
T ss_pred             cCHHHccCCcCCCEEECCCCccC--ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECc-CCccceecCch
Confidence            45667788888888888888876  7777777888888888888888887776567778888888888 88877643 44


Q ss_pred             hhccCCCCcEEEecCccccccChhhhcCCcccc----EEeccCCccccc
Q psy8031          81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELY----TLNLKNNQLENI  125 (127)
Q Consensus        81 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~----~l~l~~n~i~~~  125 (127)
                      .|..+++|+.+++++|.++.++...+..+.+++    .+++++|.++.+
T Consensus       144 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~  192 (276)
T 2z62_A          144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI  192 (276)
T ss_dssp             GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE
T ss_pred             hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc
Confidence            467778888888888887776654444444333    455555554443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.75  E-value=1.8e-17  Score=116.02  Aligned_cols=119  Identities=20%  Similarity=0.377  Sum_probs=91.4

Q ss_pred             hhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChh--------hhcCCCCCcEEEecCCCCCee
Q psy8031           5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD--------LFWNSTNITNIVLTGHKKLTS   76 (127)
Q Consensus         5 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~--------~~~~~~~l~~l~l~~~n~~~~   76 (127)
                      ..|..+++|+.|++++|.+.  .+++..|.+++.|+++++++|+++.++..        .|..+++|+.++++ +|.++.
T Consensus       474 ~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~-~N~l~~  550 (680)
T 1ziw_A          474 SPFQPLRNLTILDLSNNNIA--NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE-SNGFDE  550 (680)
T ss_dssp             CTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECC-SSCCCC
T ss_pred             cccccCCCCCEEECCCCCCC--cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECC-CCCCCC
Confidence            45667778888888888766  77777778888888888888887765322        25667788888888 888888


Q ss_pred             ecchhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          77 LPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        77 ~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      ++...|.++++|+.+++++|.++.++...|..+++|+.+++++|.++.++
T Consensus       551 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~  600 (680)
T 1ziw_A          551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE  600 (680)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred             CCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence            87777777888888888888888888877777888888888888777654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.74  E-value=8.3e-18  Score=117.67  Aligned_cols=120  Identities=24%  Similarity=0.381  Sum_probs=65.6

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      +++..|..+++|+.|++++|.+.  .+++..|..++.|+++++++|.++.+++..|..+++|+.++++ +|.+..+++..
T Consensus        40 ~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~-~n~l~~~~~~~  116 (680)
T 1ziw_A           40 LPAANFTRYSQLTSLDVGFNTIS--KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM-SNSIQKIKNNP  116 (680)
T ss_dssp             CCGGGGGGGTTCSEEECCSSCCC--CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCSCT
T ss_pred             cCHHHHhCCCcCcEEECCCCccC--ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC-CCccCccChhH
Confidence            34455555566666666665544  4555555555556666665555555555445555555555555 55555555444


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      |..+++|+.+++++|.++..+...++.+++|+.+++++|.++.
T Consensus       117 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  159 (680)
T 1ziw_A          117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA  159 (680)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred             ccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence            5555555555555555554443334455555555555554443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.74  E-value=3.5e-17  Score=104.94  Aligned_cols=118  Identities=23%  Similarity=0.329  Sum_probs=80.6

Q ss_pred             hhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccc-cChhhhcCCCCCcEEEecCCCCCeeecchhhc
Q psy8031           5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE-LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR   83 (127)
Q Consensus         5 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~   83 (127)
                      ..|..+++|+.|++++|.+.  ..++..|..++.|+++++++|.++. ..+..+..+++|+.++++ +|.+..+++..|.
T Consensus       120 ~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~  196 (306)
T 2z66_A          120 SVFLSLRNLIYLDISHTHTR--VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS-QCQLEQLSPTAFN  196 (306)
T ss_dssp             TTTTTCTTCCEEECTTSCCE--ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT-TSCCCEECTTTTT
T ss_pred             hhhhhccCCCEEECCCCcCC--ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC-CCCcCCcCHHHhc
Confidence            45666777777777777654  5555666677777777777777664 333346667777777777 7777777666666


Q ss_pred             cCCCCcEEEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031          84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI  125 (127)
Q Consensus        84 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~  125 (127)
                      .+++|+.+++++|.++.++...+..+++|+.+++++|.++..
T Consensus       197 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence            677777777777777776665566677777777777766653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=5.1e-17  Score=98.24  Aligned_cols=108  Identities=24%  Similarity=0.399  Sum_probs=97.6

Q ss_pred             ceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEE
Q psy8031          13 LQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLE   92 (127)
Q Consensus        13 l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~   92 (127)
                      -+.++++++++.  .+|..+   .+.++.|++++|+++.++ ..|..+++|+.|+++ +|.++.+++..|.++++|+.++
T Consensus        12 ~~~l~~~~~~l~--~ip~~~---~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls-~N~i~~i~~~~f~~l~~L~~L~   84 (193)
T 2wfh_A           12 DTVVRCSNKGLK--VLPKGI---PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLS-NNRISTLSNQSFSNMTQLLTLI   84 (193)
T ss_dssp             TTEEECTTSCCS--SCCSCC---CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCEEEcCCCCCC--cCCCCC---CCCCCEEECCCCcCchhH-HHhhcccCCCEEECC-CCcCCEeCHhHccCCCCCCEEE
Confidence            467899999876  899865   368999999999999988 458899999999999 9999999998899999999999


Q ss_pred             ecCccccccChhhhcCCccccEEeccCCcccccCC
Q psy8031          93 LQRNKLKYLPENLFESLKELYTLNLKNNQLENITR  127 (127)
Q Consensus        93 l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~  127 (127)
                      +++|.++.++...|..+++|+.|++++|.++.+|+
T Consensus        85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~  119 (193)
T 2wfh_A           85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE  119 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeCh
Confidence            99999999998888999999999999999998763

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.73  E-value=8.3e-18  Score=109.84  Aligned_cols=119  Identities=22%  Similarity=0.253  Sum_probs=82.4

Q ss_pred             chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccCh-hhhcCCCCCcEEEecCCC-CCeeecch
Q psy8031           3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS-DLFWNSTNITNIVLTGHK-KLTSLPST   80 (127)
Q Consensus         3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~~n-~~~~~~~~   80 (127)
                      +++.|..+++|+.|++++|.+.  .+++..|..+++|+++++++|+++.++. ..|..+++|+.++++ +| .+..+++.
T Consensus        92 ~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~-~n~~~~~~~~~  168 (353)
T 2z80_A           92 EEDSFSSLGSLEHLDLSYNYLS--NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG-NMDTFTKIQRK  168 (353)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCS--SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEE-ESSSCCEECTT
T ss_pred             CHhhcCCCCCCCEEECCCCcCC--cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECC-CCccccccCHH
Confidence            4556777777888888877765  6777766777777777777777777766 556677777777777 66 46666666


Q ss_pred             hhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031          81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        81 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      .|..+++|+.+++++|.++.+....++.+++|+.+++++|.+..
T Consensus       169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  212 (353)
T 2z80_A          169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL  212 (353)
T ss_dssp             TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred             HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence            66667777777777777666644445666666666666665544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.73  E-value=1.9e-17  Score=114.47  Aligned_cols=119  Identities=13%  Similarity=0.188  Sum_probs=65.6

Q ss_pred             chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031           3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF   82 (127)
Q Consensus         3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~   82 (127)
                      ++..|..+++|+.|++++|.+.  .+++..|..+++|+++++++|.++.+.+..|..+++|+.++++ +|.+..+++..|
T Consensus        49 ~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~i~~l~~~~~  125 (606)
T 3t6q_A           49 QNTTFSRLINLTFLDLTRCQIY--WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI-QTGISSIDFIPL  125 (606)
T ss_dssp             CTTTSTTCTTCSEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT-TSCCSCGGGSCC
T ss_pred             ChhHhccCccceEEECCCCccc--eeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc-ccCcccCCcchh
Confidence            3445556666666666666554  5555555666666666666666665555455555666666666 555555544444


Q ss_pred             ccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031          83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        83 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      ..+++|+.+++++|.+..++...+..+++|+.+++++|.++.
T Consensus       126 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  167 (606)
T 3t6q_A          126 HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY  167 (606)
T ss_dssp             TTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred             ccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence            555555555555555554422112335555555555555544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.72  E-value=1.1e-16  Score=103.70  Aligned_cols=115  Identities=23%  Similarity=0.370  Sum_probs=78.0

Q ss_pred             hhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhcc
Q psy8031           5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD   84 (127)
Q Consensus         5 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~   84 (127)
                      ..|..+++|+.|++++|.+.  .+|...   .+.|+++++++|.++.+++..|..+++|+.++++ +|.+..+++..+..
T Consensus       165 ~~~~~l~~L~~L~l~~n~l~--~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~  238 (330)
T 1xku_A          165 GAFQGMKKLSYIRIADTNIT--TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS-FNSISAVDNGSLAN  238 (330)
T ss_dssp             TGGGGCTTCCEEECCSSCCC--SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECC-SSCCCEECTTTGGG
T ss_pred             hhccCCCCcCEEECCCCccc--cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECC-CCcCceeChhhccC
Confidence            34445555555555555543  444433   2556666666677776666667777778888888 77777777666677


Q ss_pred             CCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          85 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        85 ~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      +++|+.+++++|.++.+|.. +..+++|+.+++++|.++.++
T Consensus       239 l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~i~~~~  279 (330)
T 1xku_A          239 TPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIG  279 (330)
T ss_dssp             STTCCEEECCSSCCSSCCTT-TTTCSSCCEEECCSSCCCCCC
T ss_pred             CCCCCEEECCCCcCccCChh-hccCCCcCEEECCCCcCCccC
Confidence            77788888888877777776 367777888888888777665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.72  E-value=9.7e-17  Score=107.64  Aligned_cols=113  Identities=26%  Similarity=0.419  Sum_probs=103.8

Q ss_pred             ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031          11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK   90 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~   90 (127)
                      ++|+.+++++|.+.  .+++..|..++.|+++++++|+++.+++..|..+++|+.|+++ +|.+..+++..|..+++|+.
T Consensus       275 ~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~  351 (455)
T 3v47_A          275 SGVKTCDLSKSKIF--ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS-QNFLGSIDSRMFENLDKLEV  351 (455)
T ss_dssp             SCCCEEECCSSCCC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCEECGGGGTTCTTCCE
T ss_pred             cCceEEEecCcccc--ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECC-CCccCCcChhHhcCcccCCE
Confidence            68999999999976  7777788999999999999999999988789999999999999 99999998888888999999


Q ss_pred             EEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        91 l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      +++++|.++.++...|..+++|+.+++++|.++++|
T Consensus       352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  387 (455)
T 3v47_A          352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP  387 (455)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             EECCCCcccccChhhccccccccEEECCCCccccCC
Confidence            999999999887666789999999999999999876

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=5.2e-17  Score=105.26  Aligned_cols=88  Identities=18%  Similarity=0.358  Sum_probs=68.9

Q ss_pred             CCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc-EEEecCccccccChhhhcCCccccE
Q psy8031          36 LPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV-KLELQRNKLKYLPENLFESLKELYT  114 (127)
Q Consensus        36 ~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~-~l~l~~n~~~~~~~~~~~~~~~l~~  114 (127)
                      ++.|+.+++++|+++.++..+|.++.+|+.++++ .| +..++..+|.++.+|+ .+.+.. .++.++..+|.+|++|+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~-~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP-HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC-TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECC-cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            4567777777777888888788888888888888 66 7778888888888887 888877 777787777888888888


Q ss_pred             EeccCCcccccC
Q psy8031         115 LNLKNNQLENIT  126 (127)
Q Consensus       115 l~l~~n~i~~~~  126 (127)
                      ++++.|.++.++
T Consensus       302 l~l~~n~i~~I~  313 (329)
T 3sb4_A          302 VLATGDKITTLG  313 (329)
T ss_dssp             EEECSSCCCEEC
T ss_pred             EEeCCCccCccc
Confidence            888777777665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.72  E-value=1.2e-16  Score=103.45  Aligned_cols=119  Identities=21%  Similarity=0.418  Sum_probs=73.4

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      +++..|..+++|+.|++++|.+.  .+.+..|..++.|+++++++|.++.++...+   ++|+.++++ +|.+..+++..
T Consensus        67 ~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~-~n~l~~~~~~~  140 (330)
T 1xku_A           67 IKDGDFKNLKNLHTLILINNKIS--KISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVH-ENEITKVRKSV  140 (330)
T ss_dssp             BCTTTTTTCTTCCEEECCSSCCC--CBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEECC-SSCCCBBCHHH
T ss_pred             eChhhhccCCCCCEEECCCCcCC--eeCHHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEECC-CCcccccCHhH
Confidence            34455666666666776666654  5555555666666666666666666655432   456666666 66666666655


Q ss_pred             hccCCCCcEEEecCccccc--cChhhhcCCccccEEeccCCcccccC
Q psy8031          82 FRDCKKLVKLELQRNKLKY--LPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~--~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      |..+++|+.+++++|.++.  +....+..+++|+.+++++|.++.+|
T Consensus       141 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~  187 (330)
T 1xku_A          141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP  187 (330)
T ss_dssp             HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred             hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence            6666667777777666642  33334566666666666666666554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.71  E-value=3.5e-17  Score=108.07  Aligned_cols=114  Identities=25%  Similarity=0.436  Sum_probs=106.1

Q ss_pred             CccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031          10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV   89 (127)
Q Consensus        10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~   89 (127)
                      +..++.++++++.+.  .+|+..|..++.++++++++|.++.+++..|..+++|+.++++ +|.+..+++..|..+++|+
T Consensus        44 l~~l~~l~l~~~~l~--~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR--KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG-FNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GCCCSEEEEESCEES--EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCC
T ss_pred             cCCceEEEecCCchh--hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECC-CCCCCcCCHHHhcCCCCCC
Confidence            578999999999876  9999988999999999999999999998889999999999999 9999999888888899999


Q ss_pred             EEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          90 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        90 ~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      .+++++|.++.++..+|+.+++|+.+++++|.++.++
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  157 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE  157 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence            9999999999999988889999999999999988764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.71  E-value=1.4e-16  Score=94.89  Aligned_cols=109  Identities=28%  Similarity=0.466  Sum_probs=98.7

Q ss_pred             cceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEE
Q psy8031          12 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL   91 (127)
Q Consensus        12 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l   91 (127)
                      ..+.++++++++.  .+|...   .+.++.+++++|+++.+++..|..+++|+.++++ +|.+..+++..|..+++|+.+
T Consensus         8 ~~~~l~~~~~~l~--~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L   81 (177)
T 2o6r_A            8 SGTEIRCNSKGLT--SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS-QNQIQSLPDGVFDKLTKLTIL   81 (177)
T ss_dssp             ETTEEECCSSCCS--SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCEEEecCCCCc--cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECC-CCcceEeChhHccCCCccCEE
Confidence            4678999999876  888755   4689999999999999998888889999999999 999999998888889999999


Q ss_pred             EecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          92 ELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        92 ~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      ++++|.++.++...|..+++|+.+++++|.++.+|
T Consensus        82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  116 (177)
T 2o6r_A           82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP  116 (177)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             ECCCCCccccCHHHhhCCcccCEEECcCCcceEeC
Confidence            99999999999887889999999999999998876

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.71  E-value=6.2e-17  Score=111.94  Aligned_cols=119  Identities=27%  Similarity=0.390  Sum_probs=82.0

Q ss_pred             hhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccc-cChhhhcCCCCCcEEEecCCCCCeeecchhhc
Q psy8031           5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE-LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR   83 (127)
Q Consensus         5 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~   83 (127)
                      ..|..+++|+.|++++|.+.  ...+..|..+++|+++++++|.++. +.+..|..+++|+.++++ +|.+..+++..|.
T Consensus       418 ~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~  494 (606)
T 3vq2_A          418 SAFLSLEKLLYLDISYTNTK--IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS-KCQLEQISWGVFD  494 (606)
T ss_dssp             TTTTTCTTCCEEECTTSCCE--ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT-TSCCCEECTTTTT
T ss_pred             hhhhccccCCEEECcCCCCC--ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECC-CCcCCccChhhhc
Confidence            45667777777777777764  5555556677777777777777764 334446667777777777 7777777666666


Q ss_pred             cCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          84 DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        84 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      .+++|+.+++++|.++.+.+..|..+++|+.+++++|+++.+|
T Consensus       495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p  537 (606)
T 3vq2_A          495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK  537 (606)
T ss_dssp             TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEE
T ss_pred             ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccC
Confidence            6777777777777777665544667777777777777776655

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.71  E-value=1.1e-16  Score=109.89  Aligned_cols=111  Identities=22%  Similarity=0.278  Sum_probs=103.1

Q ss_pred             ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031          11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK   90 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~   90 (127)
                      ..++.|++++|++.  .+++..|..++.|+++++++|+++.+++..|..+++|+.++++ +|.+..+++..|.++++|+.
T Consensus        28 ~~l~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~  104 (570)
T 2z63_A           28 FSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQK  104 (570)
T ss_dssp             SSCCEEECCSCCCC--EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCE
T ss_pred             ccccEEEccCCccC--ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCc-CCcCCccCHhhhcCcccccc
Confidence            56899999999987  8888888999999999999999999998889999999999999 99999999888999999999


Q ss_pred             EEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031          91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        91 l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      +++++|.++.++...++.+++|+.|++++|.++.
T Consensus       105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~  138 (570)
T 2z63_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQS  138 (570)
T ss_dssp             EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccccCCCccccccccccEEecCCCccce
Confidence            9999999999887657899999999999998876

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=1.9e-17  Score=116.90  Aligned_cols=117  Identities=27%  Similarity=0.434  Sum_probs=100.2

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      ++++.|..+..|+.|++++|.+.  .++..+| .++.|++|++++|.++.+|.. |..+++|+.|+++ +|.+..+|.. 
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~--~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls-~N~l~~lp~~-  288 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF--NISANIF-KYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLS-HNRLTSLPAE-  288 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS--CCCGGGG-GCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECT-TSCCSSCCSS-
T ss_pred             cChhhhccCCCCcEEECCCCCCC--CCChhhc-CCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCc-CCcCCccChh-
Confidence            46778899999999999999986  8998886 799999999999999988865 7889999999999 9999988766 


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI  125 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~  125 (127)
                      |..+.+|+.|++++|.++.+|.. |+.+++|+.|++++|.++..
T Consensus       289 ~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          289 LGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSH
T ss_pred             hcCCCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCC
Confidence            57889999999999999999988 68999999999999998853

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.70  E-value=1.5e-16  Score=110.08  Aligned_cols=118  Identities=20%  Similarity=0.238  Sum_probs=105.8

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      ||.+.   ...++.|++++|.+.  .+++..|..++.|++|++++|+++.+.+..|..+++|+.++++ +|.+..+++..
T Consensus        27 iP~~l---~~~l~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~  100 (606)
T 3t6q_A           27 IPGTL---PNSTECLEFSFNVLP--TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT-ANPLIFMAETA  100 (606)
T ss_dssp             CCTTS---CTTCCEEECTTCCCS--EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCSEECTTT
T ss_pred             CcCCC---CCcCcEEEccCCccC--cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCC-CCcccccChhh
Confidence            45544   246899999999987  8888888999999999999999999988889999999999999 99999998888


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI  125 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~  125 (127)
                      |..+++|+.+++++|.++.++...|+.+++|+.+++++|.++.+
T Consensus       101 ~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~  144 (606)
T 3t6q_A          101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI  144 (606)
T ss_dssp             TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC
T ss_pred             hcccccccEeeccccCcccCCcchhccCCcccEEECCCCccccc
Confidence            89999999999999999988666678999999999999999876

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.70  E-value=2.5e-16  Score=93.06  Aligned_cols=114  Identities=17%  Similarity=0.176  Sum_probs=96.8

Q ss_pred             CCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCC
Q psy8031           9 EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL   88 (127)
Q Consensus         9 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l   88 (127)
                      ..+.++.|++++|.+.-+.+|.. +..++.|++|++++|.++.+  ..+..+++|+.++++ +|.+....+..+..+++|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELS-ENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEE-SCCCCSCCCHHHHHCTTC
T ss_pred             CcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECc-CCcCchHHHHHHhhCCCC
Confidence            35789999999998642366654 58899999999999999988  457889999999999 999998555656678999


Q ss_pred             cEEEecCccccccCh-hhhcCCccccEEeccCCcccccC
Q psy8031          89 VKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        89 ~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      +.+++++|.++.++. ..+..+++|+.+++++|+++.++
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~  136 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN  136 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH
Confidence            999999999998864 45688999999999999998876

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.69  E-value=1.3e-16  Score=103.48  Aligned_cols=107  Identities=21%  Similarity=0.417  Sum_probs=59.9

Q ss_pred             ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031          11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK   90 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~   90 (127)
                      +.++.|++++|.+.  .+++..|..++.|+++++++|+++.+.+..|..+++|+.++++ +|.+..++...+   ++|+.
T Consensus        54 ~~l~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~~---~~L~~  127 (332)
T 2ft3_A           54 PDTTLLDLQNNDIS--ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS-KNHLVEIPPNLP---SSLVE  127 (332)
T ss_dssp             TTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC-SSCCCSCCSSCC---TTCCE
T ss_pred             CCCeEEECCCCcCC--ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC-CCcCCccCcccc---ccCCE
Confidence            34555666666544  5555555556666666666666665555555555666666666 555555554432   45555


Q ss_pred             EEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031          91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        91 l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~  123 (127)
                      +++++|.++.++...|..+++|+.+++++|.++
T Consensus       128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             EECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            555555555555544555555555555555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.69  E-value=2e-16  Score=109.59  Aligned_cols=117  Identities=23%  Similarity=0.448  Sum_probs=99.7

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      +++..|..+++|+.|++++|.+.  .+++..|+.++.|++|++++|.++.+++..|..+++|+.|+++ +|.+..+++..
T Consensus        90 ~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~  166 (597)
T 3oja_B           90 IDTYAFAYAHTIQKLYMGFNAIR--YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS-NNNLERIEDDT  166 (597)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCBCCTTT
T ss_pred             CChHHhcCCCCCCEEECCCCcCC--CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee-CCcCCCCChhh
Confidence            45678899999999999999976  8998888999999999999999999999888999999999999 99999998888


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      |..+++|+.+++++|.++.++..   .+++|+.+++++|.++.
T Consensus       167 ~~~l~~L~~L~L~~N~l~~~~~~---~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          167 FQATTSLQNLQLSSNRLTHVDLS---LIPSLFHANVSYNLLST  206 (597)
T ss_dssp             TTTCTTCCEEECTTSCCSBCCGG---GCTTCSEEECCSSCCSE
T ss_pred             hhcCCcCcEEECcCCCCCCcChh---hhhhhhhhhcccCcccc
Confidence            88899999999999999887643   34555555555554443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.69  E-value=2e-16  Score=101.44  Aligned_cols=121  Identities=17%  Similarity=0.270  Sum_probs=103.8

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      +++..|..+++|+.|++++|.+. +...+..|..++.|+++++++|.++.+++..|..+++|+.++++ +|.+..++...
T Consensus       141 ~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~  218 (306)
T 2z66_A          141 AFNGIFNGLSSLEVLKMAGNSFQ-ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS-HNNFFSLDTFP  218 (306)
T ss_dssp             CSTTTTTTCTTCCEEECTTCEEG-GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCSBCCSGG
T ss_pred             cchhhcccCcCCCEEECCCCccc-cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC-CCccCccChhh
Confidence            35567888999999999999875 22444567899999999999999999987778899999999999 99999998877


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCC-ccccEEeccCCcccc
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESL-KELYTLNLKNNQLEN  124 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~-~~l~~l~l~~n~i~~  124 (127)
                      |..+++|+.+++++|.++..+...+..+ ++|+.+++++|+++.
T Consensus       219 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            8889999999999999987766556777 489999999998763

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.69  E-value=3.2e-16  Score=90.94  Aligned_cols=114  Identities=17%  Similarity=0.254  Sum_probs=91.6

Q ss_pred             CCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCC
Q psy8031           9 EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL   88 (127)
Q Consensus         9 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l   88 (127)
                      ..++++.|++++|.+.-+.+|. .+..++.++++++++|.++.+  ..+..+++|+.++++ +|.+....+..+..+++|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS-DNRVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECC-SSCCCSCTHHHHHHCTTC
T ss_pred             CCccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECC-CCcccchHHHHhhhCCCC
Confidence            3467899999999864235665 558889999999999999887  447788999999999 999888555556668899


Q ss_pred             cEEEecCccccccCh-hhhcCCccccEEeccCCcccccC
Q psy8031          89 VKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        89 ~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      +.+++++|.++.++. ..++.+++|+.+++++|.++.++
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~  129 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN  129 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence            999999999987752 44688899999999999988765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=6.2e-16  Score=93.63  Aligned_cols=109  Identities=13%  Similarity=0.113  Sum_probs=48.7

Q ss_pred             cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCC-CeeecchhhccCC
Q psy8031           8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKK-LTSLPSTLFRDCK   86 (127)
Q Consensus         8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~-~~~~~~~~~~~~~   86 (127)
                      ..+++|+.|++++|.+.  ......+..+++|+++++++|+++...+..+..+++|+.++++ +|. +..++.  +..++
T Consensus        85 ~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~-~n~~i~~~~~--l~~l~  159 (197)
T 4ezg_A           85 SGLSNLERLRIMGKDVT--SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS-YNGAITDIMP--LKTLP  159 (197)
T ss_dssp             TTCTTCCEEEEECTTCB--GGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECC-SCTBCCCCGG--GGGCS
T ss_pred             hcCCCCCEEEeECCccC--cccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEcc-CCCCccccHh--hcCCC
Confidence            34444455555544443  2222223444555555555555544333334444555555555 444 444431  34444


Q ss_pred             CCcEEEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031          87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        87 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~  123 (127)
                      +|+.+++++|.++.++  .+..+++|+.+++++|+|.
T Consensus       160 ~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          160 ELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             SCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred             CCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence            5555555555555444  1344455555555555544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.68  E-value=4.5e-16  Score=107.07  Aligned_cols=114  Identities=24%  Similarity=0.323  Sum_probs=91.2

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      ||.+.+   ++++.|++++|.+.  .+++..|..++.|++|++++|+++.+++..|..+++|+.|+++ +|.++.++.. 
T Consensus        46 ip~~~~---~~L~~L~Ls~N~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~lp~~-  118 (562)
T 3a79_B           46 VPKDLP---PRTKALSLSQNSIS--ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS-HNRLQNISCC-  118 (562)
T ss_dssp             CCTTSC---TTCCEEECCSSCCC--CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT-TSCCCEECSC-
T ss_pred             CCCCCC---CCcCEEECCCCCcc--ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC-CCcCCccCcc-
Confidence            555543   67888888888876  7887778888888888888888888877778888888888888 8888888775 


Q ss_pred             hccCCCCcEEEecCccccccCh-hhhcCCccccEEeccCCcccc
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~i~~  124 (127)
                        .+++|+.+++++|.++.++. ..|+++++|+.|++++|.++.
T Consensus       119 --~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          119 --PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             --CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             --ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence              57888888888888887652 346788888888888887754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=2.8e-16  Score=94.89  Aligned_cols=108  Identities=23%  Similarity=0.390  Sum_probs=96.4

Q ss_pred             cceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChh-hhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031          12 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSD-LFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK   90 (127)
Q Consensus        12 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~   90 (127)
                      .-+.++++++++.  .+|..++   ..++++++++|+++.+++. .|..+++|+.|+++ +|.++.+.+..|.++++|+.
T Consensus         9 ~~~~l~~s~~~l~--~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~   82 (192)
T 1w8a_A            9 EGTTVDCTGRGLK--EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELK-RNQLTGIEPNAFEGASHIQE   82 (192)
T ss_dssp             ETTEEECTTSCCS--SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECC-SSCCCCBCTTTTTTCTTCCE
T ss_pred             CCCEEEcCCCCcC--cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECC-CCCCCCcCHhHcCCcccCCE
Confidence            3478999999976  8998663   3899999999999988864 58889999999999 99999998888899999999


Q ss_pred             EEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031          91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENI  125 (127)
Q Consensus        91 l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~  125 (127)
                      +++++|.++.++...|..+++|+.|++++|.++.+
T Consensus        83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  117 (192)
T 1w8a_A           83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV  117 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred             EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence            99999999999888788999999999999999875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.68  E-value=1.3e-16  Score=95.09  Aligned_cols=112  Identities=20%  Similarity=0.276  Sum_probs=96.8

Q ss_pred             cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecc-hhhccCC
Q psy8031           8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TLFRDCK   86 (127)
Q Consensus         8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~-~~~~~~~   86 (127)
                      ...++|+.|++++|.+.  .+  ..|..++.|+++++++|.++.+++..|..+++|+.++++ +|.+..++. ..+..++
T Consensus        39 ~~~~~L~~L~Ls~N~l~--~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-~N~i~~~~~~~~l~~l~  113 (176)
T 1a9n_A           39 ATLDQFDAIDFSDNEIR--KL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT-NNSLVELGDLDPLASLK  113 (176)
T ss_dssp             GGTTCCSEEECCSSCCC--EE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC-SCCCCCGGGGGGGGGCT
T ss_pred             hcCCCCCEEECCCCCCC--cc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC-CCcCCcchhhHhhhcCC
Confidence            33448999999999986  66  356889999999999999999988777889999999999 999998876 3467889


Q ss_pred             CCcEEEecCccccccChh---hhcCCccccEEeccCCcccc
Q psy8031          87 KLVKLELQRNKLKYLPEN---LFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        87 ~l~~l~l~~n~~~~~~~~---~~~~~~~l~~l~l~~n~i~~  124 (127)
                      +|+.+++++|.++.++..   ++..+++|+.++++.|...+
T Consensus       114 ~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          114 SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             TCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            999999999999988875   56889999999999987653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=7.4e-16  Score=93.30  Aligned_cols=113  Identities=13%  Similarity=0.147  Sum_probs=89.7

Q ss_pred             hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031           7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK   86 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~   86 (127)
                      +..+++|+.|++++|.+.  .++  .+..++.|+++++++|.++......+..+++|+.++++ +|.+....+..+..++
T Consensus        62 l~~l~~L~~L~l~~n~~~--~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls-~n~i~~~~~~~l~~l~  136 (197)
T 4ezg_A           62 IEYAHNIKDLTINNIHAT--NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS-HSAHDDSILTKINTLP  136 (197)
T ss_dssp             GGGCTTCSEEEEESCCCS--CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC-SSBCBGGGHHHHTTCS
T ss_pred             HhcCCCCCEEEccCCCCC--cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec-CCccCcHhHHHHhhCC
Confidence            567888889999888754  443  45788899999999998886444457788899999999 8888875555567788


Q ss_pred             CCcEEEecCcc-ccccChhhhcCCccccEEeccCCcccccC
Q psy8031          87 KLVKLELQRNK-LKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        87 ~l~~l~l~~n~-~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      +|+.+++++|. ++.++.  +..+++|+.+++++|.++.++
T Consensus       137 ~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~~  175 (197)
T 4ezg_A          137 KVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYR  175 (197)
T ss_dssp             SCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCCT
T ss_pred             CCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcChH
Confidence            99999999997 888863  578889999999999887764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.67  E-value=1.5e-16  Score=108.82  Aligned_cols=118  Identities=19%  Similarity=0.266  Sum_probs=68.2

Q ss_pred             hhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeec-chhh
Q psy8031           4 KDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP-STLF   82 (127)
Q Consensus         4 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~-~~~~   82 (127)
                      +..|..+++|+.|++++|.+.  .+++..|..+++|++|++++|.++.+++..|..+++|+.++++ +|.+..++ +..|
T Consensus        43 ~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~  119 (549)
T 2z81_A           43 HGDLRACANLQVLILKSSRIN--TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM-GNPYQTLGVTSLF  119 (549)
T ss_dssp             SSTTSSCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT-TCCCSSSCSSCSC
T ss_pred             hhhhhcCCcccEEECCCCCcC--ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC-CCcccccchhhhh
Confidence            344556666666666666554  5555555666666666666666666665555666666666666 66555431 1234


Q ss_pred             ccCCCCcEEEecCcc-ccccChhhhcCCccccEEeccCCcccc
Q psy8031          83 RDCKKLVKLELQRNK-LKYLPENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        83 ~~~~~l~~l~l~~n~-~~~~~~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      ..+++|+.+++++|. +..++...|..+++|+.+++++|.++.
T Consensus       120 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A          120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence            555566666666654 455554445566666666666665554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.67  E-value=5.3e-16  Score=100.55  Aligned_cols=118  Identities=19%  Similarity=0.397  Sum_probs=89.3

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      ++++.|..+++|+.|++++|.+.  .+++..|..++.|+++++++|.++.++...+   ++|+.++++ +|.+..+++..
T Consensus        69 ~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~-~n~i~~~~~~~  142 (332)
T 2ft3_A           69 LRKDDFKGLQHLYALVLVNNKIS--KIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIH-DNRIRKVPKGV  142 (332)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCC--EECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECC-SSCCCCCCSGG
T ss_pred             cCHhHhhCCCCCcEEECCCCccC--ccCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECC-CCccCccCHhH
Confidence            34566778888888888888766  7766777888888888888888887776543   678888888 88888887777


Q ss_pred             hccCCCCcEEEecCccccc--cChhhhcCCccccEEeccCCcccccC
Q psy8031          82 FRDCKKLVKLELQRNKLKY--LPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~--~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      |..+++|+.+++++|.++.  +....|..+ +|+.+++++|.++.+|
T Consensus       143 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~  188 (332)
T 2ft3_A          143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP  188 (332)
T ss_dssp             GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred             hCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence            7778888888888887753  444445555 7888888888887765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.67  E-value=2.6e-16  Score=107.70  Aligned_cols=119  Identities=26%  Similarity=0.389  Sum_probs=102.5

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      ||++++   +.++.|++++|.+.  .+++..|..++.|+++++++|+++.+++..|..+++|+.|+++ +|.+..+++..
T Consensus        20 ip~~~~---~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~   93 (549)
T 2z81_A           20 IPSGLT---AAMKSLDLSFNKIT--YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS-DNHLSSLSSSW   93 (549)
T ss_dssp             CCSCCC---TTCCEEECCSSCCC--EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCCSCCHHH
T ss_pred             ccccCC---CCccEEECcCCccC--ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC-CCccCccCHHH
Confidence            566553   57999999999976  8887788999999999999999999988889999999999999 99999999888


Q ss_pred             hccCCCCcEEEecCccccccCh-hhhcCCccccEEeccCCc-ccccC
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQ-LENIT  126 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~-i~~~~  126 (127)
                      |..+++|+.+++++|.++.++. ..++.+++|+.+++++|. +..+|
T Consensus        94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~  140 (549)
T 2z81_A           94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR  140 (549)
T ss_dssp             HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred             hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC
Confidence            8899999999999999985422 236889999999999997 55554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.67  E-value=3.5e-16  Score=101.45  Aligned_cols=118  Identities=25%  Similarity=0.436  Sum_probs=67.4

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCC-CCeeecch
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHK-KLTSLPST   80 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n-~~~~~~~~   80 (127)
                      ||+.++ .+++|+.|++++|.+.  .+|..+ ..++.|++|++++|.++.+|.. +..+++|+.++++ +| ....+|..
T Consensus        96 lp~~l~-~l~~L~~L~L~~n~l~--~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~-~n~~~~~~p~~  169 (328)
T 4fcg_A           96 FPDQAF-RLSHLQHMTIDAAGLM--ELPDTM-QQFAGLETLTLARNPLRALPAS-IASLNRLRELSIR-ACPELTELPEP  169 (328)
T ss_dssp             CCSCGG-GGTTCSEEEEESSCCC--CCCSCG-GGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEE-EETTCCCCCSC
T ss_pred             cChhhh-hCCCCCEEECCCCCcc--chhHHH-hccCCCCEEECCCCccccCcHH-HhcCcCCCEEECC-CCCCccccChh
Confidence            444443 3667777777777665  566543 6677777777777777766543 5556666666666 53 33333332


Q ss_pred             h--------hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          81 L--------FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        81 ~--------~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      .        |.++++|+.+++++|.++.+|.. ++.+++|+.|++++|.++.+|
T Consensus       170 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~N~l~~l~  222 (328)
T 4fcg_A          170 LASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALG  222 (328)
T ss_dssp             SEEEC-CCCEEESTTCCEEEEEEECCCCCCGG-GGGCTTCCEEEEESSCCCCCC
T ss_pred             HhhccchhhhccCCCCCEEECcCCCcCcchHh-hcCCCCCCEEEccCCCCCcCc
Confidence            1        12355555666655555555554 355555555555555555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.66  E-value=3.9e-16  Score=90.56  Aligned_cols=109  Identities=19%  Similarity=0.247  Sum_probs=93.4

Q ss_pred             hhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecc-hhhcc
Q psy8031           6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TLFRD   84 (127)
Q Consensus         6 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~-~~~~~   84 (127)
                      .+..+++|+.|++++|.+.  .+  ..+..++.|+++++++|.++...+..+..+++|+.++++ +|.+..++. ..+..
T Consensus        37 ~~~~l~~L~~L~l~~n~l~--~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls-~N~i~~~~~~~~~~~  111 (149)
T 2je0_A           37 LTDEFEELEFLSTINVGLT--SI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS-GNKIKDLSTIEPLKK  111 (149)
T ss_dssp             CCTTCTTCCEEECTTSCCC--CC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT-TSCCCSHHHHGGGGG
T ss_pred             HHhhcCCCcEEECcCCCCC--Cc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC-CCcCCChHHHHHHhh
Confidence            5678999999999999976  66  556889999999999999998555556778999999999 999998752 55688


Q ss_pred             CCCCcEEEecCccccccCh---hhhcCCccccEEeccC
Q psy8031          85 CKKLVKLELQRNKLKYLPE---NLFESLKELYTLNLKN  119 (127)
Q Consensus        85 ~~~l~~l~l~~n~~~~~~~---~~~~~~~~l~~l~l~~  119 (127)
                      +++|+.+++++|.++.++.   ..+..+++|+.+++++
T Consensus       112 l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          112 LENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999999999999998887   5678899999998763

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.65  E-value=5.5e-16  Score=101.27  Aligned_cols=122  Identities=23%  Similarity=0.331  Sum_probs=50.8

Q ss_pred             chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcE-EEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNT-VILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~-l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      |+++|+++++|+.|++++|++. +.++.++|.+++.+.. +.+.+|+++.+++..|..+++|+.++++ +|.+..+++..
T Consensus        46 ~~~~f~~l~~L~~L~Ls~N~i~-~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~-~n~l~~~~~~~  123 (350)
T 4ay9_X           46 QKGAFSGFGDLEKIEISQNDVL-EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS-NTGIKHLPDVH  123 (350)
T ss_dssp             CTTSSTTCTTCCEEEEECCTTC-CEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEE-EECCSSCCCCT
T ss_pred             CHHHHcCCCCCCEEECcCCCCC-CccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccc-ccccccCCchh
Confidence            4444444555555555554431 2344444444444332 2233344444444444444444444444 44443333322


Q ss_pred             hccCCCCcEEEecC-ccccccChhhhcCCc-cccEEeccCCcccccC
Q psy8031          82 FRDCKKLVKLELQR-NKLKYLPENLFESLK-ELYTLNLKNNQLENIT  126 (127)
Q Consensus        82 ~~~~~~l~~l~l~~-n~~~~~~~~~~~~~~-~l~~l~l~~n~i~~~~  126 (127)
                      +.....+..+++.. +.+..++...|..+. .++.+++++|.+++++
T Consensus       124 ~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~  170 (350)
T 4ay9_X          124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH  170 (350)
T ss_dssp             TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred             hcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence            22222222232221 223333333333332 3555666666665554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.65  E-value=1.1e-15  Score=91.00  Aligned_cols=96  Identities=21%  Similarity=0.337  Sum_probs=85.8

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      ||++++   +.++.|++++|++.  .+++..|..++.|++|++++|+++.+++..|..+++|+.|+++ +|.+..+++..
T Consensus        27 iP~~~~---~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~-~N~l~~l~~~~  100 (174)
T 2r9u_A           27 VPAGIP---TDKQRLWLNNNQIT--KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN-DNHLKSIPRGA  100 (174)
T ss_dssp             CCSCCC---TTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTT
T ss_pred             cCCCcC---CCCcEEEeCCCCcc--ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC-CCccceeCHHH
Confidence            565553   67999999999987  8888888999999999999999999999888899999999999 99999999988


Q ss_pred             hccCCCCcEEEecCccccccCh
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPE  103 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~  103 (127)
                      |..+++|+.+++++|.+...+.
T Consensus       101 ~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A          101 FDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             TTTCTTCSEEECCSSCBCTTBG
T ss_pred             hccccCCCEEEeCCCCcccccc
Confidence            8889999999999999875543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.65  E-value=7.4e-16  Score=104.97  Aligned_cols=112  Identities=27%  Similarity=0.349  Sum_probs=81.6

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      ||..++   ++++.|++++|.+.  .+++..|..++.|++|++++|+++.+.+..|..+++|+.|+++ +|.+..+|.. 
T Consensus        15 ip~~~~---~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~lp~~-   87 (520)
T 2z7x_B           15 VPKDLS---QKTTILNISQNYIS--ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS-HNKLVKISCH-   87 (520)
T ss_dssp             CCCSCC---TTCSEEECCSSCCC--CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC-SSCCCEEECC-
T ss_pred             cccccc---ccccEEECCCCccc--ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC-CCceeecCcc-
Confidence            454443   56778888888765  6776667778888888888888887766667777888888888 7777777665 


Q ss_pred             hccCCCCcEEEecCcccccc--ChhhhcCCccccEEeccCCccc
Q psy8031          82 FRDCKKLVKLELQRNKLKYL--PENLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~--~~~~~~~~~~l~~l~l~~n~i~  123 (127)
                        .+++|+.+++++|.++.+  |.. |+.+++|+.|++++|.++
T Consensus        88 --~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           88 --PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             --CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCC
T ss_pred             --ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccc
Confidence              467788888888877753  344 577777888887777665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.65  E-value=1e-15  Score=90.79  Aligned_cols=94  Identities=24%  Similarity=0.387  Sum_probs=84.6

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      ||.++   .+.++.|++++|.+.  .+++..|..++.|++|++++|+++.+++..|..+++|+.|+++ +|.++.+++..
T Consensus        24 ip~~~---~~~l~~L~L~~N~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~-~N~l~~~~~~~   97 (170)
T 3g39_A           24 VPTGI---PTTTQVLYLYDNQIT--KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN-DNQLKSIPRGA   97 (170)
T ss_dssp             CCSCC---CTTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTT
T ss_pred             cCccC---CCCCcEEEcCCCcCC--ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC-CCccCEeCHHH
Confidence            55555   367899999999987  8988888999999999999999999999889999999999999 99999999988


Q ss_pred             hccCCCCcEEEecCcccccc
Q psy8031          82 FRDCKKLVKLELQRNKLKYL  101 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~  101 (127)
                      |..+++|+.+++++|.+...
T Consensus        98 ~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           98 FDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             TTTCTTCCEEECCSSCBCTT
T ss_pred             hcCCCCCCEEEeCCCCCCCC
Confidence            88899999999999987633

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=1.5e-15  Score=104.73  Aligned_cols=106  Identities=19%  Similarity=0.212  Sum_probs=94.9

Q ss_pred             cceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEE
Q psy8031          12 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL   91 (127)
Q Consensus        12 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l   91 (127)
                      .|+.|++++|.+.  .+|.  |..++.|+.|++++|.++.+|.. ++.+++|+.|+++ +|.++.+|  .+..+++|+.|
T Consensus       442 ~L~~L~Ls~n~l~--~lp~--~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls-~N~l~~lp--~l~~l~~L~~L  513 (567)
T 1dce_A          442 DVRVLHLAHKDLT--VLCH--LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQAS-DNALENVD--GVANLPRLQEL  513 (567)
T ss_dssp             TCSEEECTTSCCS--SCCC--GGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECC-SSCCCCCG--GGTTCSSCCEE
T ss_pred             CceEEEecCCCCC--CCcC--ccccccCcEeecCcccccccchh-hhcCCCCCEEECC-CCCCCCCc--ccCCCCCCcEE
Confidence            4889999999987  7876  68999999999999999988874 7889999999999 99999987  46889999999


Q ss_pred             EecCcccccc--ChhhhcCCccccEEeccCCcccccC
Q psy8031          92 ELQRNKLKYL--PENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        92 ~l~~n~~~~~--~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      ++++|.++.+  |.. ++.+++|+.|++++|+++.+|
T Consensus       514 ~Ls~N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          514 LLCNNRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             ECCSSCCCSSSTTGG-GGGCTTCCEEECTTSGGGGSS
T ss_pred             ECCCCCCCCCCCcHH-HhcCCCCCEEEecCCcCCCCc
Confidence            9999999988  555 689999999999999998875

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.64  E-value=2.3e-15  Score=98.07  Aligned_cols=104  Identities=17%  Similarity=0.209  Sum_probs=84.4

Q ss_pred             eEEEecCC-cCcccccCccccCCCCCCcEEEecC-CcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEE
Q psy8031          14 QVIKISYH-KDSLKELPSGLFANLPLLNTVILGE-SSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKL   91 (127)
Q Consensus        14 ~~l~l~~~-~~~~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l   91 (127)
                      ..++.+++ ++.  .+|.  +..+.+|+.|++++ |.++.+++..|..+++|+.|+++ +|.++.+++..|..+++|+.|
T Consensus        11 ~~v~~~~~n~l~--~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L   85 (347)
T 2ifg_A           11 SGLRCTRDGALD--SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV-KSGLRFVAPDAFHFTPRLSRL   85 (347)
T ss_dssp             SCEECCSSCCCT--TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECC-SSCCCEECTTGGGSCSCCCEE
T ss_pred             CEEEcCCCCCCC--ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECC-CCccceeCHHHhcCCcCCCEE
Confidence            45677777 665  7887  57788888888885 88888888778888888888888 888888888878888888888


Q ss_pred             EecCccccccChhhhcCCccccEEeccCCccc
Q psy8031          92 ELQRNKLKYLPENLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        92 ~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~  123 (127)
                      +|++|.++.+|...|..++ |+.|++.+|++.
T Consensus        86 ~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           86 NLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             ECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             eCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            8888888888887766555 888888888765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.64  E-value=2.6e-15  Score=104.77  Aligned_cols=121  Identities=20%  Similarity=0.317  Sum_probs=85.1

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCC-------CCcEEEecCCcccccChhhh-cCCCCCcEEEecCCCC
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP-------LLNTVILGESSIAELPSDLF-WNSTNITNIVLTGHKK   73 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~-------~l~~l~l~~n~~~~~~~~~~-~~~~~l~~l~l~~~n~   73 (127)
                      +|+.+|..+++|+.|++++|.+.  .+|...+....       .|+.|++++|+++.++...+ ..+++|+.++++ +|.
T Consensus       448 lp~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls-~N~  524 (636)
T 4eco_A          448 FPKELFSTGSPLSSINLMGNMLT--EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS-YNS  524 (636)
T ss_dssp             CCTHHHHTTCCCSEEECCSSCCS--BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECC-SSC
T ss_pred             CCHHHHccCCCCCEEECCCCCCC--CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECC-CCC
Confidence            56677777777888888888765  77776655443       77888888888877776543 367788888888 777


Q ss_pred             CeeecchhhccCCCCcEEEec------Ccccc-ccChhhhcCCccccEEeccCCcccccCC
Q psy8031          74 LTSLPSTLFRDCKKLVKLELQ------RNKLK-YLPENLFESLKELYTLNLKNNQLENITR  127 (127)
Q Consensus        74 ~~~~~~~~~~~~~~l~~l~l~------~n~~~-~~~~~~~~~~~~l~~l~l~~n~i~~~~~  127 (127)
                      +..+|... ..+++|+.++++      +|.+. .+|.. ++.+++|+.|++++|.++.+|.
T Consensus       525 l~~ip~~~-~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~ip~  583 (636)
T 4eco_A          525 FSKFPTQP-LNSSTLKGFGIRNQRDAQGNRTLREWPEG-ITLCPSLTQLQIGSNDIRKVNE  583 (636)
T ss_dssp             CSSCCCGG-GGCSSCCEEECCSCBCTTCCBCCCCCCTT-GGGCSSCCEEECCSSCCCBCCS
T ss_pred             CCCcChhh-hcCCCCCEEECCCCcccccCcccccChHH-HhcCCCCCEEECCCCcCCccCH
Confidence            77766553 557778888874      34433 55555 4677888888888888877763

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.64  E-value=8.8e-16  Score=100.30  Aligned_cols=121  Identities=17%  Similarity=0.244  Sum_probs=79.1

Q ss_pred             chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecC-CcccccChhhhcCCC-CCcEEEecCCCCCeeecch
Q psy8031           3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGE-SSIAELPSDLFWNST-NITNIVLTGHKKLTSLPST   80 (127)
Q Consensus         3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~~~~-~l~~l~l~~~n~~~~~~~~   80 (127)
                      ++++|..+++|+.|++++|++.  .+++..+.....+..+++.+ +++..++...|.... .++.++++ +|.++.++..
T Consensus        96 ~~~~f~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~-~N~i~~i~~~  172 (350)
T 4ay9_X           96 NPEAFQNLPNLQYLLISNTGIK--HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN-KNGIQEIHNS  172 (350)
T ss_dssp             CTTSBCCCTTCCEEEEEEECCS--SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC-SSCCCEECTT
T ss_pred             Cchhhhhccccccccccccccc--cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccc-cccccCCChh
Confidence            3444555555555555555443  44444434444444444433 345555555555443 46778888 8888888887


Q ss_pred             hhccCCCCcEEEec-CccccccChhhhcCCccccEEeccCCcccccCC
Q psy8031          81 LFRDCKKLVKLELQ-RNKLKYLPENLFESLKELYTLNLKNNQLENITR  127 (127)
Q Consensus        81 ~~~~~~~l~~l~l~-~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~  127 (127)
                      .|. ..++..+.+. +|.++.+|..+|..+++|+.|++++|+++++|.
T Consensus       173 ~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~  219 (350)
T 4ay9_X          173 AFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS  219 (350)
T ss_dssp             SST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred             hcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence            765 3577888886 468888988888899999999999999998873

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.64  E-value=3.9e-15  Score=95.77  Aligned_cols=37  Identities=22%  Similarity=0.338  Sum_probs=14.8

Q ss_pred             CCCCcEEEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031          85 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        85 ~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~  123 (127)
                      +++|+.+++++|.++.++.  +..+++|+.|++++|.++
T Consensus       150 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          150 LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence            3344444444444433332  233344444444444433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.64  E-value=1.8e-15  Score=108.36  Aligned_cols=113  Identities=25%  Similarity=0.359  Sum_probs=93.6

Q ss_pred             ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031          11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK   90 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~   90 (127)
                      ++++.|++++|.+.  .+++..|..++.|+.+++++|.++.+++..|..+++|+.|+++ +|.+..+.+..|.++++|+.
T Consensus       266 ~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~  342 (844)
T 3j0a_A          266 SSVRHLDLSHGFVF--SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS-YNLLGELYSSNFYGLPKVAY  342 (844)
T ss_dssp             SCCCEEECTTCCCC--EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE-SCCCSCCCSCSCSSCTTCCE
T ss_pred             CCccEEECCCCccc--ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC-CCCCCccCHHHhcCCCCCCE
Confidence            67888888888876  7777778888888888888888888877778888888888888 88888887777788888888


Q ss_pred             EEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        91 l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      +++++|.+..++...|..+++|+.|++++|.++.++
T Consensus       343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~  378 (844)
T 3j0a_A          343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH  378 (844)
T ss_dssp             EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred             EECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence            888888888887776778888888888888877654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=2e-15  Score=97.85  Aligned_cols=104  Identities=19%  Similarity=0.246  Sum_probs=97.6

Q ss_pred             CCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCc-EEEecCCCCCeeecchhhccCCC
Q psy8031           9 EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNIT-NIVLTGHKKLTSLPSTLFRDCKK   87 (127)
Q Consensus         9 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~-~l~l~~~n~~~~~~~~~~~~~~~   87 (127)
                      .+++|+.+++++|.+.  .+++++|.++.+|+.+++.+| ++.++.++|.++.+|+ .+.++ . .+..+++.+|.+|.+
T Consensus       224 ~~~~L~~l~L~~n~i~--~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~-~-~l~~I~~~aF~~c~~  298 (329)
T 3sb4_A          224 YMPNLVSLDISKTNAT--TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELP-A-SVTAIEFGAFMGCDN  298 (329)
T ss_dssp             HCTTCCEEECTTBCCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEEC-T-TCCEECTTTTTTCTT
T ss_pred             hcCCCeEEECCCCCcc--eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEc-c-cceEEchhhhhCCcc
Confidence            3889999999999876  999999999999999999997 9999999999999999 99999 7 899999999999999


Q ss_pred             CcEEEecCccccccChhhhcCCccccEEec
Q psy8031          88 LVKLELQRNKLKYLPENLFESLKELYTLNL  117 (127)
Q Consensus        88 l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l  117 (127)
                      |+.+++.+|.++.++..+|.++++|+.++.
T Consensus       299 L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          299 LRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            999999999999999999999999998864

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.63  E-value=1.5e-15  Score=97.93  Aligned_cols=113  Identities=14%  Similarity=0.155  Sum_probs=62.0

Q ss_pred             hhhhcCCccceEEEecCCcCcccccCcccc-CCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031           4 KDLFAEMKYLQVIKISYHKDSLKELPSGLF-ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF   82 (127)
Q Consensus         4 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~   82 (127)
                      +..|..+++|+.|++++|.+.  .+++..+ ..++.|+++++++|.++.++..  ..+++|+.++++ +|.+..+++. +
T Consensus       137 ~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~l~~L~~L~Ls-~N~l~~l~~~-~  210 (317)
T 3o53_A          137 DLDEGCRSRVQYLDLKLNEID--TVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLS-SNKLAFMGPE-F  210 (317)
T ss_dssp             GBCTGGGSSEEEEECTTSCCC--EEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECC-SSCCCEECGG-G
T ss_pred             chhhhccCCCCEEECCCCCCC--cccHHHHhhccCcCCEEECCCCcCcccccc--cccccCCEEECC-CCcCCcchhh-h
Confidence            334455555666666665544  3333222 3455566666666665555332  225556666666 6666665554 4


Q ss_pred             ccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031          83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        83 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~  123 (127)
                      ..+++|+.+++++|.++.+|.. +..+++|+.+++++|++.
T Consensus       211 ~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          211 QSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             GGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCCB
T ss_pred             cccCcccEEECcCCcccchhhH-hhcCCCCCEEEccCCCcc
Confidence            4555666666666666666554 355566666666666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.63  E-value=4.3e-15  Score=101.21  Aligned_cols=111  Identities=23%  Similarity=0.290  Sum_probs=63.8

Q ss_pred             hcCCccceEEEecCCcCcccc-cCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccC
Q psy8031           7 FAEMKYLQVIKISYHKDSLKE-LPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC   85 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~   85 (127)
                      |..+++|+.|++++|.+.  . +|...|..++.|+.+++++|+++...+..+.  ++|+.++++ +|.++.+|...+ .+
T Consensus       370 ~~~l~~L~~L~Ls~N~l~--~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls-~N~l~~ip~~~~-~l  443 (520)
T 2z7x_B          370 TTQMKSLQQLDISQNSVS--YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLH-SNKIKSIPKQVV-KL  443 (520)
T ss_dssp             HTTCTTCCEEECCSSCCB--CCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECC-SSCCCCCCGGGG-GC
T ss_pred             HhhCCCCCEEECCCCcCC--cccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECC-CCcccccchhhh-cC
Confidence            455555555555555543  3 5554455555555555555555432221111  456666666 666666665543 56


Q ss_pred             CCCcEEEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031          86 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        86 ~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~  123 (127)
                      ++|+.+++++|.++.+|...|..+++|+.+++++|+++
T Consensus       444 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          444 EALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence            66667777766666666655566666677777666654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.63  E-value=2e-15  Score=97.42  Aligned_cols=112  Identities=19%  Similarity=0.145  Sum_probs=93.9

Q ss_pred             CCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhh-cCCCCCcEEEecCCCCCeeecchhhccCCC
Q psy8031           9 EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLF-WNSTNITNIVLTGHKKLTSLPSTLFRDCKK   87 (127)
Q Consensus         9 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~-~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~   87 (127)
                      .+++|+.|++++|.+.  .+++..|..++.|+++++++|.++.+++..+ ..+++|+.++++ +|.++.++...  .+++
T Consensus       118 ~~~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~--~l~~  192 (317)
T 3o53_A          118 RGQGKKNIYLANNKIT--MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ-YNFIYDVKGQV--VFAK  192 (317)
T ss_dssp             CCSSCEEEECCSSCCC--SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT-TSCCCEEECCC--CCTT
T ss_pred             ccCCCCEEECCCCCCC--CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC-CCcCccccccc--cccc
Confidence            3567888888888876  7777777888999999999999998765544 467899999999 99998886543  3789


Q ss_pred             CcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          88 LVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        88 l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      |+.+++++|.++.++.. +..+++|+.+++++|.++.+|
T Consensus       193 L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~  230 (317)
T 3o53_A          193 LKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE  230 (317)
T ss_dssp             CCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEEC
T ss_pred             CCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchh
Confidence            99999999999999887 688899999999999998876

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.62  E-value=6.4e-15  Score=92.91  Aligned_cols=107  Identities=21%  Similarity=0.304  Sum_probs=63.5

Q ss_pred             hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031           7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK   86 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~   86 (127)
                      +..+++|+.|++++|++.  .+++  +..++.|+.+++++|+++.++..  .. ++|+.|+++ +|.++.++.  +..++
T Consensus        59 l~~l~~L~~L~L~~N~i~--~~~~--l~~l~~L~~L~L~~N~l~~l~~~--~~-~~L~~L~L~-~N~l~~~~~--l~~l~  128 (263)
T 1xeu_A           59 MQFFTNLKELHLSHNQIS--DLSP--LKDLTKLEELSVNRNRLKNLNGI--PS-ACLSRLFLD-NNELRDTDS--LIHLK  128 (263)
T ss_dssp             GGGCTTCCEEECCSSCCC--CCGG--GTTCSSCCEEECCSSCCSCCTTC--CC-SSCCEEECC-SSCCSBSGG--GTTCT
T ss_pred             HhhCCCCCEEECCCCccC--CChh--hccCCCCCEEECCCCccCCcCcc--cc-CcccEEEcc-CCccCCChh--hcCcc
Confidence            455666666666666654  5554  46666666666666666665542  12 556666666 665555532  45556


Q ss_pred             CCcEEEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031          87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI  125 (127)
Q Consensus        87 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~  125 (127)
                      +|+.+++++|.++.++.  +..+++|+.+++++|.++.+
T Consensus       129 ~L~~L~Ls~N~i~~~~~--l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          129 NLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             TCCEEECTTSCCCBCGG--GGGCTTCCEEECTTSCCCBC
T ss_pred             cccEEECCCCcCCCChH--HccCCCCCEEECCCCcCcch
Confidence            66666666666666542  35566666666666665543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.62  E-value=8.9e-15  Score=93.45  Aligned_cols=62  Identities=18%  Similarity=0.307  Sum_probs=27.6

Q ss_pred             cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCee
Q psy8031           8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTS   76 (127)
Q Consensus         8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~   76 (127)
                      ..+++|+.|++++|++.  .+++  +..+++|++|++++|.++.++.  +..+++|+.|+++ +|.+..
T Consensus        65 ~~l~~L~~L~L~~n~l~--~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~-~n~i~~  126 (291)
T 1h6t_A           65 QYLPNVTKLFLNGNKLT--DIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLE-HNGISD  126 (291)
T ss_dssp             GGCTTCCEEECCSSCCC--CCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECT-TSCCCC
T ss_pred             hcCCCCCEEEccCCccC--CCcc--cccCCCCCEEECCCCcCCCChh--hccCCCCCEEECC-CCcCCC
Confidence            44455555555555443  3333  3444444444444444444332  3334444444444 444433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.61  E-value=5.9e-15  Score=94.94  Aligned_cols=108  Identities=20%  Similarity=0.388  Sum_probs=62.4

Q ss_pred             hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031           7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK   86 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~   86 (127)
                      +..+++|+.|++++|.+.  .+++  +..+++|+.+++++|.++.+++  +..+++|+.|+++ +|.+..+++  +..++
T Consensus       103 ~~~l~~L~~L~l~~n~l~--~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~-~n~l~~~~~--l~~l~  173 (308)
T 1h6u_A          103 IAGLQSIKTLDLTSTQIT--DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIG-NAQVSDLTP--LANLS  173 (308)
T ss_dssp             GTTCTTCCEEECTTSCCC--CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECC-SSCCCCCGG--GTTCT
T ss_pred             hcCCCCCCEEECCCCCCC--Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEcc-CCcCCCChh--hcCCC
Confidence            444555555555555543  4433  4555666666666666555543  4455666666666 666665544  45566


Q ss_pred             CCcEEEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031          87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI  125 (127)
Q Consensus        87 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~  125 (127)
                      +|+.+++++|.++.++.  +..+++|+.+++++|.++.+
T Consensus       174 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~  210 (308)
T 1h6u_A          174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV  210 (308)
T ss_dssp             TCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBC
T ss_pred             CCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcc
Confidence            66666666666665554  35566666666666666544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.61  E-value=1.1e-15  Score=98.46  Aligned_cols=33  Identities=9%  Similarity=0.193  Sum_probs=13.2

Q ss_pred             CCCcEEEecCCcccccChhhhcCCCCCcEEEec
Q psy8031          37 PLLNTVILGESSIAELPSDLFWNSTNITNIVLT   69 (127)
Q Consensus        37 ~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~   69 (127)
                      ++|+++++++|+++.+++..|..+++|+.++++
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  181 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS  181 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECC
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECC
Confidence            334444444444443333333334444444444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.61  E-value=4.5e-15  Score=102.12  Aligned_cols=114  Identities=18%  Similarity=0.255  Sum_probs=57.3

Q ss_pred             hhhcCCccceEEEecCCcCcccccCc--cccCCCCCCcEEEecCCcccc-cChhhhcCCCC-------------------
Q psy8031           5 DLFAEMKYLQVIKISYHKDSLKELPS--GLFANLPLLNTVILGESSIAE-LPSDLFWNSTN-------------------   62 (127)
Q Consensus         5 ~~~~~~~~l~~l~l~~~~~~~~~~~~--~~~~~~~~l~~l~l~~n~~~~-~~~~~~~~~~~-------------------   62 (127)
                      ..|..+++|+.|++++|++.  .++.  ..|..++.|+.+++++|+++. ++...|..+++                   
T Consensus       371 ~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  448 (562)
T 3a79_B          371 QGCSTLKRLQTLILQRNGLK--NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL  448 (562)
T ss_dssp             TTCCSCSSCCEEECCSSCCC--BTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC
T ss_pred             hhhcccCCCCEEECCCCCcC--CcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh
Confidence            33455555666666665543  4332  234555555555555555554 44444444444                   


Q ss_pred             ---CcEEEecCCCCCeeecchhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcc
Q psy8031          63 ---ITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL  122 (127)
Q Consensus        63 ---l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i  122 (127)
                         |+.++++ +|.++.+|...+ .+++|+.+++++|.++.+|...|..+++|+.+++++|++
T Consensus       449 ~~~L~~L~L~-~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          449 PPKVKVLDLH-NNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             CTTCSEEECC-SSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred             cCcCCEEECC-CCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence               4455555 444544444443 444555555555555555444344445555555555544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.61  E-value=3.5e-15  Score=106.91  Aligned_cols=116  Identities=22%  Similarity=0.354  Sum_probs=97.9

Q ss_pred             chhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhh
Q psy8031           3 PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLF   82 (127)
Q Consensus         3 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~   82 (127)
                      ++..|..+++|+.|++++|.+.  .+++..|..+++|++|++++|.++.+.+..|..+++|+.++++ +|.+..+++..|
T Consensus       282 ~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-~N~i~~~~~~~~  358 (844)
T 3j0a_A          282 NSRVFETLKDLKVLNLAYNKIN--KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ-KNHIAIIQDQTF  358 (844)
T ss_dssp             CSCCSSSCCCCCEEEEESCCCC--EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC-SCCCCCCCSSCS
T ss_pred             ChhhhhcCCCCCEEECCCCcCC--CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC-CCCCCccChhhh
Confidence            4567888999999999999986  8888888999999999999999998877778999999999999 999999988888


Q ss_pred             ccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          83 RDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        83 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      ..+++|+.+++++|.++.++.     +++|+.+++++|+++.+|
T Consensus       359 ~~l~~L~~L~Ls~N~l~~i~~-----~~~L~~L~l~~N~l~~l~  397 (844)
T 3j0a_A          359 KFLEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLVTLP  397 (844)
T ss_dssp             CSCCCCCEEEEETCCSCCCSS-----CCSCSEEEEESCCCCCCC
T ss_pred             cCCCCCCEEECCCCCCCcccC-----CCCcchhccCCCCccccc
Confidence            889999999999998886643     455666666666665544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.61  E-value=4.1e-15  Score=96.45  Aligned_cols=109  Identities=20%  Similarity=0.270  Sum_probs=60.8

Q ss_pred             cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCC
Q psy8031           8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKK   87 (127)
Q Consensus         8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~   87 (127)
                      .++++|+.|++++|.+.  .+|.. +..++.|+.|++++|.++.+++. +..+++|+.|+++ +|.+....+..|..+++
T Consensus       180 ~~l~~L~~L~L~~n~l~--~lp~~-l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls-~n~~~~~~p~~~~~l~~  254 (328)
T 4fcg_A          180 QGLVNLQSLRLEWTGIR--SLPAS-IANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLR-GCTALRNYPPIFGGRAP  254 (328)
T ss_dssp             EESTTCCEEEEEEECCC--CCCGG-GGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECT-TCTTCCBCCCCTTCCCC
T ss_pred             ccCCCCCEEECcCCCcC--cchHh-hcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECc-CCcchhhhHHHhcCCCC
Confidence            34555555555555544  55543 35566666666666666655553 4555666666666 55444333333455666


Q ss_pred             CcEEEecCcc-ccccChhhhcCCccccEEeccCCcc
Q psy8031          88 LVKLELQRNK-LKYLPENLFESLKELYTLNLKNNQL  122 (127)
Q Consensus        88 l~~l~l~~n~-~~~~~~~~~~~~~~l~~l~l~~n~i  122 (127)
                      |+.+++++|. ...+|.. +..+++|+.|++++|.+
T Consensus       255 L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          255 LKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             CCEEECTTCTTCCBCCTT-GGGCTTCCEEECTTCTT
T ss_pred             CCEEECCCCCchhhcchh-hhcCCCCCEEeCCCCCc
Confidence            6666666653 3345544 35666666666666543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=1.1e-14  Score=104.54  Aligned_cols=121  Identities=19%  Similarity=0.333  Sum_probs=89.4

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCC-------CCcEEEecCCcccccChhhh-cCCCCCcEEEecCCCC
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLP-------LLNTVILGESSIAELPSDLF-WNSTNITNIVLTGHKK   73 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~-------~l~~l~l~~n~~~~~~~~~~-~~~~~l~~l~l~~~n~   73 (127)
                      +|..+|..+++|+.|++++|.+.  .+|...+....       +|+.|++++|+++.++...+ ..+++|+.|+++ +|.
T Consensus       688 lp~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls-~N~  764 (876)
T 4ecn_A          688 FPTELFATGSPISTIILSNNLMT--SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVS-YNC  764 (876)
T ss_dssp             CCHHHHHTTCCCSEEECCSCCCS--CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECC-SSC
T ss_pred             cCHHHHccCCCCCEEECCCCcCC--ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeC-CCC
Confidence            67777777888888888888876  78877765443       78888888888887776533 367888888888 888


Q ss_pred             CeeecchhhccCCCCcEEEecC------cccc-ccChhhhcCCccccEEeccCCcccccCC
Q psy8031          74 LTSLPSTLFRDCKKLVKLELQR------NKLK-YLPENLFESLKELYTLNLKNNQLENITR  127 (127)
Q Consensus        74 ~~~~~~~~~~~~~~l~~l~l~~------n~~~-~~~~~~~~~~~~l~~l~l~~n~i~~~~~  127 (127)
                      +..+|... ..+++|+.+++++      |.+. .+|.. +..+++|+.|++++|.++.+|+
T Consensus       765 L~~lp~~l-~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~-l~~L~~L~~L~Ls~N~L~~Ip~  823 (876)
T 4ecn_A          765 FSSFPTQP-LNSSQLKAFGIRHQRDAEGNRILRQWPTG-ITTCPSLIQLQIGSNDIRKVDE  823 (876)
T ss_dssp             CSSCCCGG-GGCTTCCEEECCCCBCTTCCBCCCCCCTT-GGGCSSCCEEECCSSCCCBCCS
T ss_pred             CCccchhh-hcCCCCCEEECCCCCCcccccccccChHH-HhcCCCCCEEECCCCCCCccCH
Confidence            88776653 5678888888865      4433 45555 4778888888888888877763

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.61  E-value=5.8e-15  Score=95.13  Aligned_cols=89  Identities=13%  Similarity=0.270  Sum_probs=41.9

Q ss_pred             hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCe-eecchhhccC
Q psy8031           7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT-SLPSTLFRDC   85 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~-~~~~~~~~~~   85 (127)
                      |..+++|+.|++++|.+.  ...+..|..+++|+++++++|.++...+..+..+++|+.++++ .|.+. .++.. +..+
T Consensus        97 l~~l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~-~N~l~~~~p~~-l~~l  172 (313)
T 1ogq_A           97 IAKLTQLHYLYITHTNVS--GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD-GNRISGAIPDS-YGSF  172 (313)
T ss_dssp             GGGCTTCSEEEEEEECCE--EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC-SSCCEEECCGG-GGCC
T ss_pred             HhcCCCCCEEECcCCeeC--CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc-CCcccCcCCHH-Hhhh
Confidence            455555555555555543  2222333555555555555555553222234445555555555 55554 22222 2333


Q ss_pred             C-CCcEEEecCcccc
Q psy8031          86 K-KLVKLELQRNKLK   99 (127)
Q Consensus        86 ~-~l~~l~l~~n~~~   99 (127)
                      . .|+.+++++|.++
T Consensus       173 ~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          173 SKLFTSMTISRNRLT  187 (313)
T ss_dssp             CTTCCEEECCSSEEE
T ss_pred             hhcCcEEECcCCeee
Confidence            3 4444444444443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.60  E-value=8.4e-15  Score=102.22  Aligned_cols=88  Identities=24%  Similarity=0.421  Sum_probs=39.5

Q ss_pred             CCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC-------CCcEEEecCccccccChhhh-cC
Q psy8031          37 PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK-------KLVKLELQRNKLKYLPENLF-ES  108 (127)
Q Consensus        37 ~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~-------~l~~l~l~~n~~~~~~~~~~-~~  108 (127)
                      ++++.+++++|.++.++...+..+++|+.++++ +|.+..++...+....       +|+.+++++|.++.+|..++ ..
T Consensus       433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls-~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~  511 (636)
T 4eco_A          433 INVSSINLSNNQISKFPKELFSTGSPLSSINLM-GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT  511 (636)
T ss_dssp             CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECC-SSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTT
T ss_pred             CCCCEEECcCCccCcCCHHHHccCCCCCEEECC-CCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhcc
Confidence            344444444444444444444444444444444 4444444444333221       44444444444444444422 14


Q ss_pred             CccccEEeccCCccccc
Q psy8031         109 LKELYTLNLKNNQLENI  125 (127)
Q Consensus       109 ~~~l~~l~l~~n~i~~~  125 (127)
                      +++|+.|++++|+++.+
T Consensus       512 l~~L~~L~Ls~N~l~~i  528 (636)
T 4eco_A          512 LPYLVGIDLSYNSFSKF  528 (636)
T ss_dssp             CTTCCEEECCSSCCSSC
T ss_pred             CCCcCEEECCCCCCCCc
Confidence            44444444444444443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.60  E-value=1.3e-14  Score=92.72  Aligned_cols=109  Identities=21%  Similarity=0.359  Sum_probs=90.1

Q ss_pred             hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031           7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK   86 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~   86 (127)
                      +..+++|+.|++++|.+.  .++.  +..++.|+.|++++|+++.++  .+..+++|+.++++ +|.+..++  .+..++
T Consensus        86 l~~l~~L~~L~l~~n~l~--~~~~--l~~l~~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l~-~n~l~~~~--~l~~l~  156 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVK--DLSS--LKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLG-NNKITDIT--VLSRLT  156 (291)
T ss_dssp             GTTCTTCCEEECCSSCCC--CGGG--GTTCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECC-SSCCCCCG--GGGGCT
T ss_pred             cccCCCCCEEECCCCcCC--CChh--hccCCCCCEEECCCCcCCCCh--hhcCCCCCCEEEcc-CCcCCcch--hhccCC
Confidence            678889999999999876  6554  688899999999999988874  36678899999999 88888873  367788


Q ss_pred             CCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        87 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      +|+.+++++|.++.++.  +..+++|+.|++++|.++.++
T Consensus       157 ~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~  194 (291)
T 1h6t_A          157 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR  194 (291)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred             CCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh
Confidence            99999999999888766  578889999999999887764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.60  E-value=8.2e-15  Score=94.44  Aligned_cols=115  Identities=15%  Similarity=0.308  Sum_probs=83.7

Q ss_pred             hhhcCCccceEEEecC-CcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhc
Q psy8031           5 DLFAEMKYLQVIKISY-HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR   83 (127)
Q Consensus         5 ~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~   83 (127)
                      ..|..+++|+.|++++ |.+. +.+|. .|..++.|+++++++|.++...+..|..+++|+.++++ +|.+....+..+.
T Consensus        70 ~~l~~l~~L~~L~L~~~n~l~-~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls-~N~l~~~~p~~~~  146 (313)
T 1ogq_A           70 SSLANLPYLNFLYIGGINNLV-GPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS-YNALSGTLPPSIS  146 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEE-SCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC-SSEEESCCCGGGG
T ss_pred             hhHhCCCCCCeeeCCCCCccc-ccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCC-CCccCCcCChHHh
Confidence            3567788888888884 6654 23444 45778888888888888884444457778888888888 8888754444467


Q ss_pred             cCCCCcEEEecCcccc-ccChhhhcCCc-cccEEeccCCccc
Q psy8031          84 DCKKLVKLELQRNKLK-YLPENLFESLK-ELYTLNLKNNQLE  123 (127)
Q Consensus        84 ~~~~l~~l~l~~n~~~-~~~~~~~~~~~-~l~~l~l~~n~i~  123 (127)
                      .+++|+.+++++|.++ .+|.. +..++ +|+.+++++|.++
T Consensus       147 ~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          147 SLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEE
T ss_pred             cCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeee
Confidence            7888888888888887 66666 46665 7888888888776

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.59  E-value=3e-15  Score=96.41  Aligned_cols=113  Identities=19%  Similarity=0.170  Sum_probs=68.4

Q ss_pred             ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCccccc---Chh-hhcCCCCCcEEEecCCCCCeee---cchhhc
Q psy8031          11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAEL---PSD-LFWNSTNITNIVLTGHKKLTSL---PSTLFR   83 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~---~~~-~~~~~~~l~~l~l~~~n~~~~~---~~~~~~   83 (127)
                      ++|+.|++++|++.  .+++..|..+++|+++++++|++...   +.. .+..+++|+.++++ +|.+..+   +...+.
T Consensus       149 ~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~~~  225 (312)
T 1wwl_A          149 PGLKVLSIAQAHSL--NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR-NAGMETPSGVCSALAA  225 (312)
T ss_dssp             TTCCEEEEESCSCC--CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECT-TSCCCCHHHHHHHHHH
T ss_pred             CCCcEEEeeCCCCc--cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECC-CCcCcchHHHHHHHHh
Confidence            56666666666654  66656667777777777777765431   211 22556677777777 7766633   334444


Q ss_pred             cCCCCcEEEecCccccccC-hhhhcCCccccEEeccCCcccccC
Q psy8031          84 DCKKLVKLELQRNKLKYLP-ENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        84 ~~~~l~~l~l~~n~~~~~~-~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      .+++|+.+++++|.++..+ ...+..+++|+.|++++|.++++|
T Consensus       226 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip  269 (312)
T 1wwl_A          226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP  269 (312)
T ss_dssp             TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCC
T ss_pred             cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhh
Confidence            5566777777777666543 222344566677777777666655

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.59  E-value=2.8e-14  Score=92.80  Aligned_cols=111  Identities=23%  Similarity=0.354  Sum_probs=80.4

Q ss_pred             hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031           7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK   86 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~   86 (127)
                      +..+++|+.|++++|.+.  .+++  +..++.++++++++|.++.++  .+..+++|+.++++ +|.+..++  .+..++
T Consensus       217 ~~~~~~L~~L~l~~n~l~--~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~n~l~~~~--~~~~l~  287 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKIT--DLSP--LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVG-SNQISDIS--VLNNLS  287 (347)
T ss_dssp             GGGCTTCCEEECCSSCCC--CCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECC-SSCCCCCG--GGGGCT
T ss_pred             hhcCCcCCEEEccCCccC--CCcc--hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEEcc-CCccCCCh--hhcCCC
Confidence            566777788888887765  5555  567777888888887777663  35667778888888 77777663  256677


Q ss_pred             CCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        87 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      +|+.+++++|.++..+...++.+++|+.+++++|+++.++
T Consensus       288 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  327 (347)
T 4fmz_A          288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR  327 (347)
T ss_dssp             TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred             CCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc
Confidence            7888888888777666666677778888888888777653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.59  E-value=6.9e-15  Score=99.89  Aligned_cols=110  Identities=19%  Similarity=0.157  Sum_probs=50.5

Q ss_pred             ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhc-CCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031          11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFW-NSTNITNIVLTGHKKLTSLPSTLFRDCKKLV   89 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~-~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~   89 (127)
                      ++|+.|++++|.+.  .+++..|..++.|+.|++++|.++.+++..+. .+++|+.|+++ +|.+..++...  .+++|+
T Consensus       120 ~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls-~N~l~~~~~~~--~l~~L~  194 (487)
T 3oja_A          120 QGKKNIYLANNKIT--MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ-YNFIYDVKGQV--VFAKLK  194 (487)
T ss_dssp             SSCEEEECCSSCCC--SGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT-TSCCCEEECCC--CCTTCC
T ss_pred             CCCCEEECCCCCCC--CCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC-CCccccccccc--cCCCCC
Confidence            34444445444443  34333444455555555555555543333232 34445555555 44444443321  244455


Q ss_pred             EEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          90 KLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        90 ~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      .+++++|.++.++.. +..+++|+.+++++|.++.+|
T Consensus       195 ~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp  230 (487)
T 3oja_A          195 TLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE  230 (487)
T ss_dssp             EEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEEC
T ss_pred             EEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccc
Confidence            555555555444444 344444555555555444433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.59  E-value=1.4e-14  Score=91.30  Aligned_cols=108  Identities=17%  Similarity=0.249  Sum_probs=93.8

Q ss_pred             hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031           7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK   86 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~   86 (127)
                      |..+++|+.|++++|++.  .++...  . +.|+.|++++|+++.++.  +..+++|+.++++ +|.++.++  .+..++
T Consensus        81 l~~l~~L~~L~L~~N~l~--~l~~~~--~-~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~Ls-~N~i~~~~--~l~~l~  150 (263)
T 1xeu_A           81 LKDLTKLEELSVNRNRLK--NLNGIP--S-ACLSRLFLDNNELRDTDS--LIHLKNLEILSIR-NNKLKSIV--MLGFLS  150 (263)
T ss_dssp             GTTCSSCCEEECCSSCCS--CCTTCC--C-SSCCEEECCSSCCSBSGG--GTTCTTCCEEECT-TSCCCBCG--GGGGCT
T ss_pred             hccCCCCCEEECCCCccC--CcCccc--c-CcccEEEccCCccCCChh--hcCcccccEEECC-CCcCCCCh--HHccCC
Confidence            788999999999999986  777643  3 899999999999998753  7889999999999 99999886  367789


Q ss_pred             CCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        87 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      +|+.+++++|.++.+  ..+..+++|+.+++++|++...|
T Consensus       151 ~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          151 KLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             TCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             CCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            999999999999988  33688999999999999887654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.58  E-value=9.2e-15  Score=99.27  Aligned_cols=115  Identities=14%  Similarity=0.156  Sum_probs=98.8

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCcccc-CCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecch
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLF-ANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST   80 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~   80 (127)
                      +++..|..+++|+.|++++|.+.  .+++..+ ..++.|+.|++++|.++.++..  ..+++|+.|+++ +|.+..+++.
T Consensus       135 ~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~--~~l~~L~~L~Ls-~N~l~~~~~~  209 (487)
T 3oja_A          135 LRDLDEGCRSRVQYLDLKLNEID--TVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLS-SNKLAFMGPE  209 (487)
T ss_dssp             GGGBCGGGGSSEEEEECTTSCCC--EEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECC-SSCCCEECGG
T ss_pred             CCchhhcCCCCCCEEECCCCCCC--CcChHHHhhhCCcccEEecCCCcccccccc--ccCCCCCEEECC-CCCCCCCCHh
Confidence            34567788999999999999986  5444444 4789999999999999988653  358999999999 9999999887


Q ss_pred             hhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031          81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        81 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~  123 (127)
                       +..+++|+.+++++|.++.+|.. +..+++|+.+++++|++.
T Consensus       210 -~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          210 -FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             -GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBC
T ss_pred             -HcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCc
Confidence             67789999999999999999887 578899999999999886

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.58  E-value=2.1e-14  Score=93.38  Aligned_cols=109  Identities=17%  Similarity=0.317  Sum_probs=93.9

Q ss_pred             hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031           7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK   86 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~   86 (127)
                      +..+++|+.|++++|.+.  .++  .+..+++|+.+++++|.++.++  .+..+++|+.++++ +|.+...++..+..++
T Consensus       239 ~~~l~~L~~L~l~~n~l~--~~~--~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~-~n~l~~~~~~~l~~l~  311 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQIS--DIN--AVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLN-NNQLGNEDMEVIGGLT  311 (347)
T ss_dssp             GTTCTTCCEEECCSSCCC--CCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECC-SSCCCGGGHHHHHTCT
T ss_pred             hhcCCCCCEEECCCCccC--CCh--hHhcCCCcCEEEccCCccCCCh--hhcCCCCCCEEECc-CCcCCCcChhHhhccc
Confidence            678999999999999876  663  4688999999999999999874  37788999999999 9999988888788899


Q ss_pred             CCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031          87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        87 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      +|+.+++++|.++.++.  +..+++|+.+++++|.+++
T Consensus       312 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~~  347 (347)
T 4fmz_A          312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK  347 (347)
T ss_dssp             TCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC----
T ss_pred             cCCEEEccCCccccccC--hhhhhccceeehhhhcccC
Confidence            99999999999998877  4789999999999999864

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.58  E-value=2.3e-14  Score=101.79  Aligned_cols=114  Identities=19%  Similarity=0.220  Sum_probs=62.0

Q ss_pred             hhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccC
Q psy8031           6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC   85 (127)
Q Consensus         6 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~   85 (127)
                      .|..+++|+.|++++|.+.  ...+..+..++.|+++++++|+++...+..+..+++|+.++++ +|.+....+..+..+
T Consensus       437 ~l~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~-~N~l~~~~p~~~~~l  513 (768)
T 3rgz_A          437 SLGSLSKLRDLKLWLNMLE--GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS-NNRLTGEIPKWIGRL  513 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCC--SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC-SSCCCSCCCGGGGGC
T ss_pred             HHhcCCCCCEEECCCCccc--CcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc-CCccCCcCChHHhcC
Confidence            3444555555555555543  2222333555566666666666554333345556666666666 666553333334556


Q ss_pred             CCCcEEEecCcccc-ccChhhhcCCccccEEeccCCccc
Q psy8031          86 KKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        86 ~~l~~l~l~~n~~~-~~~~~~~~~~~~l~~l~l~~n~i~  123 (127)
                      ++|+.+++++|.+. .+|.. ++.+++|+.+++++|+++
T Consensus       514 ~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          514 ENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             TTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSSEEE
T ss_pred             CCCCEEECCCCcccCcCCHH-HcCCCCCCEEECCCCccC
Confidence            66666666666655 34443 456666666666666655

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.57  E-value=2.8e-15  Score=96.41  Aligned_cols=115  Identities=18%  Similarity=0.164  Sum_probs=63.2

Q ss_pred             cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccc---cCh-hhhcCCCCCcEEEecCCCCCeeecch---
Q psy8031           8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE---LPS-DLFWNSTNITNIVLTGHKKLTSLPST---   80 (127)
Q Consensus         8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~---~~~-~~~~~~~~l~~l~l~~~n~~~~~~~~---   80 (127)
                      ..+++|+.|++++|.+.  .+++..|..++.|++|++++|++..   ++. ..+..+++|+.|+++ +|.++.++..   
T Consensus       142 ~~~~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~~~  218 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSP--AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR-NTGMETPTGVCAA  218 (310)
T ss_dssp             TBCSCCCEEEEECCSSC--CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC-SSCCCCHHHHHHH
T ss_pred             hhccCCCEEEeeCCCcc--hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC-CCCCCchHHHHHH
Confidence            34666777777777654  5666666667777777777776542   211 112345556666666 6655544332   


Q ss_pred             hhccCCCCcEEEecCcccccc-ChhhhcCC---ccccEEeccCCcccccC
Q psy8031          81 LFRDCKKLVKLELQRNKLKYL-PENLFESL---KELYTLNLKNNQLENIT  126 (127)
Q Consensus        81 ~~~~~~~l~~l~l~~n~~~~~-~~~~~~~~---~~l~~l~l~~n~i~~~~  126 (127)
                      .+..+++|+.+++++|.++.+ |.. +..+   ++|+.|++++|.++.+|
T Consensus       219 l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~L~~L~Ls~N~l~~lp  267 (310)
T 4glp_A          219 LAAAGVQPHSLDLSHNSLRATVNPS-APRCMWSSALNSLNLSFAGLEQVP  267 (310)
T ss_dssp             HHHHTCCCSSEECTTSCCCCCCCSC-CSSCCCCTTCCCEECCSSCCCSCC
T ss_pred             HHhcCCCCCEEECCCCCCCccchhh-HHhccCcCcCCEEECCCCCCCchh
Confidence            233455666666666665544 332 2333   45666666666655554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.57  E-value=1e-15  Score=98.50  Aligned_cols=120  Identities=19%  Similarity=0.241  Sum_probs=84.0

Q ss_pred             CchhhhcCCccceEEEecCCcCcccc--cC-ccccCCCCCCcEEEecCCcccccChh---hhcCCCCCcEEEecCCCCCe
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKE--LP-SGLFANLPLLNTVILGESSIAELPSD---LFWNSTNITNIVLTGHKKLT   75 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~--~~-~~~~~~~~~l~~l~l~~n~~~~~~~~---~~~~~~~l~~l~l~~~n~~~   75 (127)
                      +++..|+.+++|+.|++++|++. +.  ++ ...+..+++|++|++++|+++.++..   .+..+++|+.|+++ +|.+.
T Consensus       160 ~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls-~N~l~  237 (310)
T 4glp_A          160 FSCEQVRAFPALTSLDLSDNPGL-GERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLS-HNSLR  237 (310)
T ss_dssp             CCTTSCCCCTTCCEEECCSCTTC-HHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECT-TSCCC
T ss_pred             hhHHHhccCCCCCEEECCCCCCc-cchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECC-CCCCC
Confidence            56677888999999999999853 11  22 22235678888888888888755432   34566788888888 88887


Q ss_pred             eecchhhccC---CCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          76 SLPSTLFRDC---KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        76 ~~~~~~~~~~---~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      .+.+..+..+   ++|+.+++++|.++.+|...+   ++|+.|++++|+++.+|
T Consensus       238 ~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~~~  288 (310)
T 4glp_A          238 ATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNRAP  288 (310)
T ss_dssp             CCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCSCC
T ss_pred             ccchhhHHhccCcCcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCCCc
Confidence            7633223333   578888888888887777542   67888888888777654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.57  E-value=3e-14  Score=99.00  Aligned_cols=40  Identities=18%  Similarity=0.251  Sum_probs=16.9

Q ss_pred             cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccc
Q psy8031           8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE   51 (127)
Q Consensus         8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~   51 (127)
                      ..+++|+.|++++|.+.  .+++  +..++.|+.|++++|.++.
T Consensus        62 ~~l~~L~~L~Ls~N~l~--~~~~--l~~l~~L~~L~Ls~N~l~~  101 (605)
T 1m9s_A           62 QYLPNVTKLFLNGNKLT--DIKP--LTNLKNLGWLFLDENKIKD  101 (605)
T ss_dssp             GGCTTCCEEECTTSCCC--CCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             ccCCCCCEEEeeCCCCC--CChh--hccCCCCCEEECcCCCCCC
Confidence            34444444444444433  3333  2334444444444444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.56  E-value=2.1e-14  Score=93.54  Aligned_cols=92  Identities=18%  Similarity=0.207  Sum_probs=84.2

Q ss_pred             CchhhhcCCccceEEEecC-CcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecch
Q psy8031           2 FPKDLFAEMKYLQVIKISY-HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST   80 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~   80 (127)
                      ||+  +..+++|+.|++++ |.+.  .+++..|..+++|+.|++++|+++.+++..|..+++|+.|+++ +|.+..+++.
T Consensus        24 ip~--l~~~~~L~~L~l~~~n~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~   98 (347)
T 2ifg_A           24 LHH--LPGAENLTELYIENQQHLQ--HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS-FNALESLSWK   98 (347)
T ss_dssp             TTT--SCSCSCCSEEECCSCSSCC--EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC-SSCCSCCCST
T ss_pred             cCC--CCCCCCeeEEEccCCCCCC--CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC-CCccceeCHH
Confidence            666  68889999999996 9876  9999999999999999999999999999889999999999999 9999999998


Q ss_pred             hhccCCCCcEEEecCcccc
Q psy8031          81 LFRDCKKLVKLELQRNKLK   99 (127)
Q Consensus        81 ~~~~~~~l~~l~l~~n~~~   99 (127)
                      .|..+. |+.|++.+|.+.
T Consensus        99 ~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           99 TVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             TTCSCC-CCEEECCSSCCC
T ss_pred             HcccCC-ceEEEeeCCCcc
Confidence            887655 999999999886

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.55  E-value=3.8e-14  Score=100.75  Aligned_cols=115  Identities=18%  Similarity=0.243  Sum_probs=87.5

Q ss_pred             hhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhcc
Q psy8031           5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD   84 (127)
Q Consensus         5 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~   84 (127)
                      ..|..+++|+.|++++|.+.  ...+..|..+++|+.+++++|.++...+..+..+++|+.++++ +|.+....+..+..
T Consensus       412 ~~l~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~-~N~l~~~~p~~l~~  488 (768)
T 3rgz_A          412 PTLSNCSELVSLHLSFNYLS--GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD-FNDLTGEIPSGLSN  488 (768)
T ss_dssp             GGGGGCTTCCEEECCSSEEE--SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC-SSCCCSCCCGGGGG
T ss_pred             HHHhcCCCCCEEECcCCccc--CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec-CCcccCcCCHHHhc
Confidence            45577888888888888764  4444556778888888888888885544457778888888888 88887555555677


Q ss_pred             CCCCcEEEecCcccc-ccChhhhcCCccccEEeccCCccc
Q psy8031          85 CKKLVKLELQRNKLK-YLPENLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        85 ~~~l~~l~l~~n~~~-~~~~~~~~~~~~l~~l~l~~n~i~  123 (127)
                      +++|+.+++++|.++ .+|.. ++.+++|+.+++++|+++
T Consensus       489 l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~  527 (768)
T 3rgz_A          489 CTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFS  527 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCE
T ss_pred             CCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCccc
Confidence            888888888888887 55555 578888889999888877

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.55  E-value=4.8e-14  Score=97.97  Aligned_cols=109  Identities=20%  Similarity=0.359  Sum_probs=94.3

Q ss_pred             hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031           7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK   86 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~   86 (127)
                      +..+++|+.|++++|.+.  .++  .+..++.|+.|++++|.+..++.  +..+++|+.|+++ +|.+..+  ..+..++
T Consensus        83 l~~l~~L~~L~Ls~N~l~--~l~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls-~N~l~~l--~~l~~l~  153 (605)
T 1m9s_A           83 LTNLKNLGWLFLDENKIK--DLS--SLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLG-NNKITDI--TVLSRLT  153 (605)
T ss_dssp             GGGCTTCCEEECCSSCCC--CCT--TSTTCTTCCEEECTTSCCCCCGG--GGGCTTCSEEECC-SSCCCCC--GGGGSCT
T ss_pred             hccCCCCCEEECcCCCCC--CCh--hhccCCCCCEEEecCCCCCCCcc--ccCCCccCEEECC-CCccCCc--hhhcccC
Confidence            678999999999999876  665  36889999999999999998753  6788999999999 9999887  3367889


Q ss_pred             CCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        87 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      +|+.|++++|.+..++.  +..+++|+.|++++|.++.++
T Consensus       154 ~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~  191 (605)
T 1m9s_A          154 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR  191 (605)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred             CCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh
Confidence            99999999999998866  588999999999999988764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.54  E-value=3.2e-14  Score=102.20  Aligned_cols=117  Identities=15%  Similarity=0.223  Sum_probs=69.6

Q ss_pred             hcCCccceEEEecCCcCcccc------------------cCccc-cCCCCCCcEEEecCCcccccChhhhcCCCCCcEEE
Q psy8031           7 FAEMKYLQVIKISYHKDSLKE------------------LPSGL-FANLPLLNTVILGESSIAELPSDLFWNSTNITNIV   67 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~------------------~~~~~-~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~   67 (127)
                      |..+++|+.|++++|.+.  .                  +|+.+ |..+++|+.|++++|.+....+..+..+++|+.|+
T Consensus       444 l~~L~~L~~L~Ls~N~Ls--g~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~  521 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFT--YDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN  521 (876)
T ss_dssp             GGGCTTCCEEEEESCCCC--GGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred             HhcCCCCCEEECcCCcCC--CCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence            566777777777777765  3                  56554 23677777777777765533333466667777777


Q ss_pred             ecCCCC-Cee--ecchh------hccCCCCcEEEecCccccccCh-hhhcCCccccEEeccCCcccccC
Q psy8031          68 LTGHKK-LTS--LPSTL------FRDCKKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        68 l~~~n~-~~~--~~~~~------~~~~~~l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      ++ +|. ++.  +|...      +..+++|+.+++++|.++.+|. ..++.+++|+.|++++|.++.+|
T Consensus       522 Ls-~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp  589 (876)
T 4ecn_A          522 IA-CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE  589 (876)
T ss_dssp             CT-TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC
T ss_pred             Cc-CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch
Confidence            77 665 553  44321      1122366666666666666665 22456666666666666665544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.53  E-value=1.5e-16  Score=96.44  Aligned_cols=111  Identities=18%  Similarity=0.236  Sum_probs=94.3

Q ss_pred             hhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccC
Q psy8031           6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC   85 (127)
Q Consensus         6 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~   85 (127)
                      .|..+++|+.|++++|.+.  .+|  .+..++.|+.+++++|.++.++.. +..+++|+.++++ +|.+..++.  +..+
T Consensus        43 ~~~~l~~L~~L~ls~n~l~--~l~--~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~-~N~l~~l~~--~~~l  114 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIE--KIS--SLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWIS-YNQIASLSG--IEKL  114 (198)
T ss_dssp             HHHHTTTCSEEECSEEEES--CCC--CHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEE-EEECCCHHH--HHHH
T ss_pred             HHhcCCCCCEEECCCCCCc--ccc--ccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECc-CCcCCcCCc--cccC
Confidence            6788999999999999876  777  568899999999999999988763 4556889999999 999988763  5678


Q ss_pred             CCCcEEEecCccccccCh-hhhcCCccccEEeccCCcccc
Q psy8031          86 KKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        86 ~~l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      ++|+.+++++|.++.++. ..+..+++|+.+++++|++..
T Consensus       115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            899999999999998765 456889999999999998754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.51  E-value=1.1e-13  Score=95.65  Aligned_cols=108  Identities=19%  Similarity=0.261  Sum_probs=91.6

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeec-ch
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLP-ST   80 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~-~~   80 (127)
                      ||.  |..+++|+.|++++|.+.  .+|.. +..+++|+.|++++|+++.+|  .+..+++|+.|+++ +|.++.+. +.
T Consensus       456 lp~--~~~l~~L~~L~Ls~N~l~--~lp~~-~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls-~N~l~~~~~p~  527 (567)
T 1dce_A          456 LCH--LEQLLLVTHLDLSHNRLR--ALPPA-LAALRCLEVLQASDNALENVD--GVANLPRLQELLLC-NNRLQQSAAIQ  527 (567)
T ss_dssp             CCC--GGGGTTCCEEECCSSCCC--CCCGG-GGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECC-SSCCCSSSTTG
T ss_pred             CcC--ccccccCcEeecCccccc--ccchh-hhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECC-CCCCCCCCCcH
Confidence            454  788999999999999987  88875 589999999999999999987  48889999999999 99999985 55


Q ss_pred             hhccCCCCcEEEecCccccccChh---hhcCCccccEEec
Q psy8031          81 LFRDCKKLVKLELQRNKLKYLPEN---LFESLKELYTLNL  117 (127)
Q Consensus        81 ~~~~~~~l~~l~l~~n~~~~~~~~---~~~~~~~l~~l~l  117 (127)
                      .+..+++|+.+++++|.++.+++.   ++..+++|+.|++
T Consensus       528 ~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          528 PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             HHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            578899999999999999877653   3344678888753

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.48  E-value=1.9e-13  Score=92.25  Aligned_cols=105  Identities=25%  Similarity=0.251  Sum_probs=63.9

Q ss_pred             hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031           7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK   86 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~   86 (127)
                      +..+++|+.|++++|.+.  .+|  .+..++.|+++++++|+++.++   +..+++|+.++++ +|.++.++   +..++
T Consensus        38 ~~~l~~L~~L~Ls~n~l~--~~~--~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls-~N~l~~~~---~~~l~  106 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSIT--DMT--GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACD-SNKLTNLD---VTPLT  106 (457)
T ss_dssp             HHHHTTCCEEECCSSCCC--CCT--TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECC-SSCCSCCC---CTTCT
T ss_pred             hhHcCCCCEEEccCCCcc--cCh--hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECc-CCCCceee---cCCCC
Confidence            344566667777776654  554  2456666666666666666653   4556666666666 66666553   44556


Q ss_pred             CCcEEEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031          87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI  125 (127)
Q Consensus        87 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~  125 (127)
                      +|+.+++++|.++.++   ++.+++|+.+++++|.++.+
T Consensus       107 ~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l  142 (457)
T 3bz5_A          107 KLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEI  142 (457)
T ss_dssp             TCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCC
T ss_pred             cCCEEECCCCcCCeec---CCCCCcCCEEECCCCcccee
Confidence            6666666666666554   35566666666666665543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.48  E-value=3.3e-13  Score=89.75  Aligned_cols=95  Identities=13%  Similarity=0.190  Sum_probs=56.3

Q ss_pred             ccCccccCCCCCCcEEEecCCccc-----ccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCcccccc
Q psy8031          27 ELPSGLFANLPLLNTVILGESSIA-----ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYL  101 (127)
Q Consensus        27 ~~~~~~~~~~~~l~~l~l~~n~~~-----~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~  101 (127)
                      .++.++|.++.+|+.+.+.++.+.     .++..+|.++++|+.+.++ . .+..++..+|.+|.+|+.+.+..+ ++.+
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I  337 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-E-SIRILGQGLLGGNRKVTQLTIPAN-VTQI  337 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-T-TCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-C-ceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence            455555566666666666555443     4555556666666666655 3 255666666666666666666433 5566


Q ss_pred             ChhhhcCCccccEEeccCCccccc
Q psy8031         102 PENLFESLKELYTLNLKNNQLENI  125 (127)
Q Consensus       102 ~~~~~~~~~~l~~l~l~~n~i~~~  125 (127)
                      +..+|.++ +|+.+++.+|.+..+
T Consensus       338 ~~~aF~~~-~L~~l~l~~n~~~~l  360 (401)
T 4fdw_A          338 NFSAFNNT-GIKEVKVEGTTPPQV  360 (401)
T ss_dssp             CTTSSSSS-CCCEEEECCSSCCBC
T ss_pred             cHHhCCCC-CCCEEEEcCCCCccc
Confidence            66666666 666666666655443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.48  E-value=5e-13  Score=90.20  Aligned_cols=83  Identities=20%  Similarity=0.345  Sum_probs=35.7

Q ss_pred             CCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCccccccChhhhcCCccccE
Q psy8031          35 NLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYT  114 (127)
Q Consensus        35 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~  114 (127)
                      .++.|+.+++++|+++.+++  +..+++|+.++++ +|.+..+++  +..+++|+.+++++|.++.++.  +..+++|+.
T Consensus       285 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~-~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~  357 (466)
T 1o6v_A          285 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLY-FNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINW  357 (466)
T ss_dssp             TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECC-SSCCSCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             CCCccCeEEcCCCcccCchh--hcCCCCCCEEECc-CCcCCCchh--hccCccCCEeECCCCccCCchh--hccCCCCCE
Confidence            33334444444443333322  2333444444444 444443332  2334444445554444444421  344555555


Q ss_pred             EeccCCcccc
Q psy8031         115 LNLKNNQLEN  124 (127)
Q Consensus       115 l~l~~n~i~~  124 (127)
                      +++++|.++.
T Consensus       358 L~l~~n~l~~  367 (466)
T 1o6v_A          358 LSAGHNQISD  367 (466)
T ss_dssp             EECCSSCCCB
T ss_pred             EeCCCCccCc
Confidence            5555555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.47  E-value=8.1e-14  Score=98.61  Aligned_cols=96  Identities=22%  Similarity=0.346  Sum_probs=81.2

Q ss_pred             cCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCccccccChhhhc
Q psy8031          28 LPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFE  107 (127)
Q Consensus        28 ~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~  107 (127)
                      +++..|..+..|+.|++++|.+..++...| .+++|+.|+++ +|.+..+|.. |..+.+|+.|++++|.++.+|.. |+
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls-~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp~~-~~  290 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLN-GNSLTELPAE-IKNLSNLRVLDLSHNRLTSLPAE-LG  290 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCT-TSCCSCCCGG-GGGGTTCCEEECTTSCCSSCCSS-GG
T ss_pred             cChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEee-CCcCcccChh-hhCCCCCCEEeCcCCcCCccChh-hc
Confidence            456677889999999999999999998766 68999999999 9999988865 57899999999999999999887 58


Q ss_pred             CCccccEEeccCCcccccCC
Q psy8031         108 SLKELYTLNLKNNQLENITR  127 (127)
Q Consensus       108 ~~~~l~~l~l~~n~i~~~~~  127 (127)
                      .+++|+.|++++|.++.+|+
T Consensus       291 ~l~~L~~L~L~~N~l~~lp~  310 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVTTLPW  310 (727)
T ss_dssp             GGTTCSEEECCSSCCCCCCS
T ss_pred             CCCCCCEEECCCCCCCccCh
Confidence            99999999999999998874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.47  E-value=7.2e-13  Score=89.42  Aligned_cols=107  Identities=23%  Similarity=0.364  Sum_probs=49.7

Q ss_pred             hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031           7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK   86 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~   86 (127)
                      +..+++|+.|++++|.+.  .+++  +..++.|+.+++++|.++.+++  +..+++|+.++++ +|.+..+++  +..++
T Consensus       239 l~~l~~L~~L~l~~n~l~--~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~-~n~l~~~~~--~~~l~  309 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQIS--NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN-ENQLEDISP--ISNLK  309 (466)
T ss_dssp             GGGCTTCSEEECCSSCCC--CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC-SSCCSCCGG--GGGCT
T ss_pred             hhcCCCCCEEECCCCccc--cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcC-CCcccCchh--hcCCC
Confidence            344445555555555443  3332  3444555555555555444433  3344455555555 444444433  33444


Q ss_pred             CCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031          87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        87 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      +|+.+++++|.++.++.  +..+++|+.+++++|+++.
T Consensus       310 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~  345 (466)
T 1o6v_A          310 NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD  345 (466)
T ss_dssp             TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             CCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence            55555555554444433  2344455555555554443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.46  E-value=7.8e-13  Score=91.36  Aligned_cols=76  Identities=26%  Similarity=0.408  Sum_probs=31.6

Q ss_pred             CCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCccccccChhhhcCCccccEEec
Q psy8031          38 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNL  117 (127)
Q Consensus        38 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l  117 (127)
                      +|+.|++++|.++.++.    .+++|+.|+++ +|.++.++.    .+++|+.+++++|.++.+|.  |.  ++|+.|++
T Consensus       121 ~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls-~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~L  187 (571)
T 3cvr_A          121 SLKHLDVDNNQLTMLPE----LPALLEYINAD-NNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDV  187 (571)
T ss_dssp             TCCEEECCSSCCSCCCC----CCTTCCEEECC-SSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEEC
T ss_pred             CCCEEECCCCcCCCCCC----cCccccEEeCC-CCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEEC
Confidence            34444444444443333    13344444444 444443332    12344444444444444443  22  44444444


Q ss_pred             cCCcccccC
Q psy8031         118 KNNQLENIT  126 (127)
Q Consensus       118 ~~n~i~~~~  126 (127)
                      ++|.++.+|
T Consensus       188 s~N~L~~lp  196 (571)
T 3cvr_A          188 STNLLESLP  196 (571)
T ss_dssp             CSSCCSSCC
T ss_pred             cCCCCCchh
Confidence            444444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.45  E-value=4e-13  Score=89.31  Aligned_cols=116  Identities=17%  Similarity=0.341  Sum_probs=88.1

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCe-----e
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT-----S   76 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~-----~   76 (127)
                      |+.++|.+|.+|+.+.+..+ +.  .++.++|.+ ..|+.+.+ .+.++.++..+|.++.+|+.+.+. .+.+.     .
T Consensus       217 I~~~aF~~~~~L~~l~l~~~-l~--~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~-~~~~~~~~~~~  290 (401)
T 4fdw_A          217 IGSQAFLKTSQLKTIEIPEN-VS--TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTY-GSTFNDDPEAM  290 (401)
T ss_dssp             ECTTTTTTCTTCCCEECCTT-CC--EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEE-SSCCCCCTTCE
T ss_pred             ehhhHhhCCCCCCEEecCCC-cc--Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeC-CccccCCcccE
Confidence            46677777777777777764 33  677777776 66777777 456778888888888888888888 76655     6


Q ss_pred             ecchhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031          77 LPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI  125 (127)
Q Consensus        77 ~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~  125 (127)
                      ++..+|.+|.+|+.+.+. +.++.++..+|.+|.+|+.+.+..| ++.+
T Consensus       291 I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I  337 (401)
T 4fdw_A          291 IHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQI  337 (401)
T ss_dssp             ECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred             ECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence            888888888888888888 4588888888888888988888554 4443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.44  E-value=7.1e-13  Score=91.56  Aligned_cols=99  Identities=21%  Similarity=0.333  Sum_probs=70.3

Q ss_pred             CccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCC-
Q psy8031          10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL-   88 (127)
Q Consensus        10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l-   88 (127)
                      +++|+.|++++|.+.  .+|.    .+++|+.|++++|.++.+|.  |.  ++|+.|+++ +|.++.+|.  +..  +| 
T Consensus       139 l~~L~~L~Ls~N~l~--~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls-~N~L~~lp~--~~~--~L~  203 (571)
T 3cvr_A          139 PALLEYINADNNQLT--MLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVS-TNLLESLPA--VPV--RNH  203 (571)
T ss_dssp             CTTCCEEECCSSCCS--CCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECC-SSCCSSCCC--CC------
T ss_pred             CccccEEeCCCCccC--cCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECc-CCCCCchhh--HHH--hhh
Confidence            556677777777655  5554    35677777777777777666  43  678888888 888877766  332  56 


Q ss_pred             ------cEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031          89 ------VKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        89 ------~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                            +.+++++|.++.+|..++ .+++|+.|++++|+++.
T Consensus       204 ~~~~~L~~L~Ls~N~l~~lp~~l~-~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          204 HSEETEIFFRCRENRITHIPENIL-SLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             ----CCEEEECCSSCCCCCCGGGG-GSCTTEEEECCSSSCCH
T ss_pred             cccccceEEecCCCcceecCHHHh-cCCCCCEEEeeCCcCCC
Confidence                  888888888888888764 48888888888888764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.41  E-value=3e-12  Score=86.42  Aligned_cols=100  Identities=18%  Similarity=0.149  Sum_probs=68.8

Q ss_pred             hhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccC
Q psy8031           6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC   85 (127)
Q Consensus         6 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~   85 (127)
                      .|..+++|+.|++++|++.  .++   +..++.|+++++++|.++.++   +..+++|+.++++ +|.++.++   +..+
T Consensus        59 ~l~~l~~L~~L~Ls~n~l~--~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~-~N~l~~l~---~~~l  126 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNNIT--TLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCD-TNKLTKLD---VSQN  126 (457)
T ss_dssp             TGGGCTTCSEEECCSSCCS--CCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECC-SSCCSCCC---CTTC
T ss_pred             hhcccCCCCEEEccCCcCC--eEc---cccCCCCCEEECcCCCCceee---cCCCCcCCEEECC-CCcCCeec---CCCC
Confidence            3567888888888888865  564   577888888888888887764   5667788888888 77777664   4566


Q ss_pred             CCCcEEEecCccccccChhhhcCCccccEEeccCC
Q psy8031          86 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN  120 (127)
Q Consensus        86 ~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n  120 (127)
                      ++|+.+++++|.++.++   ++.+++|+.+++++|
T Consensus       127 ~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          127 PLLTYLNCARNTLTEID---VSHNTQLTELDCHLN  158 (457)
T ss_dssp             TTCCEEECTTSCCSCCC---CTTCTTCCEEECTTC
T ss_pred             CcCCEEECCCCccceec---cccCCcCCEEECCCC
Confidence            77777777777776653   234444444444444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.40  E-value=5.7e-13  Score=87.34  Aligned_cols=110  Identities=21%  Similarity=0.255  Sum_probs=50.8

Q ss_pred             ccceEEEecCCcCcccccCc----cccCCCC-CCcEEEecCCcccccChhhhcCC-----CCCcEEEecCCCCCeeecch
Q psy8031          11 KYLQVIKISYHKDSLKELPS----GLFANLP-LLNTVILGESSIAELPSDLFWNS-----TNITNIVLTGHKKLTSLPST   80 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~~----~~~~~~~-~l~~l~l~~n~~~~~~~~~~~~~-----~~l~~l~l~~~n~~~~~~~~   80 (127)
                      ++|+.|++++|.+.  ..+.    ..|..++ .+++|++++|.++......+...     ++|+.|+++ +|.+...+..
T Consensus        22 ~~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~n~l~~~~~~   98 (362)
T 3goz_A           22 HGVTSLDLSLNNLY--SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLS-GNFLSYKSSD   98 (362)
T ss_dssp             TTCCEEECTTSCGG--GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC-SSCGGGSCHH
T ss_pred             CCceEEEccCCCCC--hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECc-CCcCChHHHH
Confidence            33555555555543  4443    3444455 55555555555554433333322     455555555 5555443332


Q ss_pred             hh----ccC-CCCcEEEecCccccccChhhhc----C-CccccEEeccCCccc
Q psy8031          81 LF----RDC-KKLVKLELQRNKLKYLPENLFE----S-LKELYTLNLKNNQLE  123 (127)
Q Consensus        81 ~~----~~~-~~l~~l~l~~n~~~~~~~~~~~----~-~~~l~~l~l~~n~i~  123 (127)
                      .+    ... ++|+.+++++|.++..+...+.    . .++|+.|++++|.++
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence            11    112 4455555555555444432222    1 134555555555444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.39  E-value=3.4e-12  Score=86.06  Aligned_cols=105  Identities=27%  Similarity=0.392  Sum_probs=55.1

Q ss_pred             hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031           7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK   86 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~   86 (127)
                      |..+++|+.|++++|++.  .+|..    ..+++++++++|+++.++.  +..+++|+.++++ +|.+..++..    ..
T Consensus       149 ~~~l~~L~~L~l~~N~l~--~lp~~----~~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~l~-~N~l~~l~~~----~~  215 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLK--KLPDL----PPSLEFIAAGNNQLEELPE--LQNLPFLTAIYAD-NNSLKKLPDL----PL  215 (454)
T ss_dssp             CTTCTTCCEEECCSSCCS--CCCCC----CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECC-SSCCSSCCCC----CT
T ss_pred             cCCCCCCCEEECCCCcCc--ccCCC----cccccEEECcCCcCCcCcc--ccCCCCCCEEECC-CCcCCcCCCC----cC
Confidence            444555555555555543  34321    2345555555555554441  4455555555555 5555444321    13


Q ss_pred             CCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          87 KLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        87 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      +++.+++++|.++.+|.  ++.+++|+.+++++|.++.+|
T Consensus       216 ~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l~  253 (454)
T 1jl5_A          216 SLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLP  253 (454)
T ss_dssp             TCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCC
T ss_pred             cccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCccc
Confidence            55566666665555553  456666667777666666554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.38  E-value=4.5e-12  Score=88.41  Aligned_cols=76  Identities=24%  Similarity=0.302  Sum_probs=40.5

Q ss_pred             ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031          11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK   90 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~   90 (127)
                      ++|+.|++++|.+.  .+|.    .+++|++|++++|+++.++.    .+++|+.|+++ +|.+..++.    .+.+|+.
T Consensus        61 ~~L~~L~L~~N~l~--~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls-~N~l~~l~~----~l~~L~~  125 (622)
T 3g06_A           61 AHITTLVIPDNNLT--SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIF-SNPLTHLPA----LPSGLCK  125 (622)
T ss_dssp             TTCSEEEECSCCCS--CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEEC-SCCCCCCCC----CCTTCCE
T ss_pred             CCCcEEEecCCCCC--CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECc-CCcCCCCCC----CCCCcCE
Confidence            45666666666654  5554    24566666666666665554    24555666666 555555443    1234444


Q ss_pred             EEecCcccccc
Q psy8031          91 LELQRNKLKYL  101 (127)
Q Consensus        91 l~l~~n~~~~~  101 (127)
                      +++++|.++.+
T Consensus       126 L~L~~N~l~~l  136 (622)
T 3g06_A          126 LWIFGNQLTSL  136 (622)
T ss_dssp             EECCSSCCSCC
T ss_pred             EECCCCCCCcC
Confidence            44444444443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.35  E-value=1.2e-11  Score=81.94  Aligned_cols=113  Identities=21%  Similarity=0.451  Sum_probs=97.2

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      |...+|.++..|+.+.+..+. .  .+..++|..+..|+.+.+. +.++.++..+|.++.+|+.+.++ . .++.++..+
T Consensus       256 i~~~aF~~c~~L~~i~lp~~~-~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp-~-~v~~I~~~a  329 (394)
T 4gt6_A          256 IETHAFDSCAYLASVKMPDSV-V--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIP-E-GITQILDDA  329 (394)
T ss_dssp             ECTTTTTTCSSCCEEECCTTC-C--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECC-T-TCCEECTTT
T ss_pred             cccceeeecccccEEeccccc-c--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeC-C-cccEehHhH
Confidence            456789999999999998764 3  7888999999999999986 57888999999999999999998 5 488899999


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCc
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ  121 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~  121 (127)
                      |.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+++.++.
T Consensus       330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            999999999999654 788999889999999999998763

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.33  E-value=1.6e-11  Score=80.81  Aligned_cols=113  Identities=26%  Similarity=0.356  Sum_probs=89.4

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      |+..+|.++..|+.+.+..+ +.  .+...+|..+..++.+.+.. .++.++..+|.++.+|+.+.+. .+.++.++..+
T Consensus       231 i~~~~f~~~~~L~~i~lp~~-v~--~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~-~~~i~~I~~~a  305 (379)
T 4h09_A          231 LGDGAFYGMKALDEIAIPKN-VT--SIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMD-NSAIETLEPRV  305 (379)
T ss_dssp             ECTTTTTTCSSCCEEEECTT-CC--EECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEEC-CTTCCEECTTT
T ss_pred             EccccccCCccceEEEcCCC-cc--EeCccccceeehhccccccc-cceecccccccccccccccccc-ccccceehhhh
Confidence            45667788888888888765 33  78888888888888888854 5777787888888888888888 88888888888


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCCccccEEeccCC
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNN  120 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n  120 (127)
                      |.+|.+|+.+.+..+ ++.++..+|.+|.+|+.+.+..+
T Consensus       306 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          306 FMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            888888888888643 77788888888888888877543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.32  E-value=2e-12  Score=84.71  Aligned_cols=117  Identities=19%  Similarity=0.225  Sum_probs=60.9

Q ss_pred             hhhcCCc-cceEEEecCCcCcccccCccccCCC-----CCCcEEEecCCcccccChhh----hcCC-CCCcEEEecCCCC
Q psy8031           5 DLFAEMK-YLQVIKISYHKDSLKELPSGLFANL-----PLLNTVILGESSIAELPSDL----FWNS-TNITNIVLTGHKK   73 (127)
Q Consensus         5 ~~~~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~-----~~l~~l~l~~n~~~~~~~~~----~~~~-~~l~~l~l~~~n~   73 (127)
                      .+|..++ +|+.|++++|.+.  ......+..+     +.|++|++++|.++......    +... ++|+.|+++ +|.
T Consensus        44 ~~l~~~~~~L~~L~Ls~N~l~--~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~N~  120 (362)
T 3goz_A           44 QAFANTPASVTSLNLSGNSLG--FKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG-WND  120 (362)
T ss_dssp             HHHHTCCTTCCEEECCSSCGG--GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC-SSC
T ss_pred             HHHHhCCCceeEEECcCCCCC--HHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECc-CCc
Confidence            4555666 6777777777654  4444333332     66677777776666554432    2223 566666666 666


Q ss_pred             Ceeecchhhc----c-CCCCcEEEecCccccccChhh----hcCCc-cccEEeccCCcccc
Q psy8031          74 LTSLPSTLFR----D-CKKLVKLELQRNKLKYLPENL----FESLK-ELYTLNLKNNQLEN  124 (127)
Q Consensus        74 ~~~~~~~~~~----~-~~~l~~l~l~~n~~~~~~~~~----~~~~~-~l~~l~l~~n~i~~  124 (127)
                      +...+...+.    . ..+|+.+++++|.+++.....    +...+ +|+.|++++|.++.
T Consensus       121 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence            6555443222    1 235666666666555322211    12232 55555555555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.29  E-value=2.2e-12  Score=85.12  Aligned_cols=118  Identities=19%  Similarity=0.216  Sum_probs=79.5

Q ss_pred             hhcCCccceEEEecCCcCcccc---cCccccCCCCCCcEEEecCCccc-----ccChhhhcCCCCCcEEEecCCCCCeee
Q psy8031           6 LFAEMKYLQVIKISYHKDSLKE---LPSGLFANLPLLNTVILGESSIA-----ELPSDLFWNSTNITNIVLTGHKKLTSL   77 (127)
Q Consensus         6 ~~~~~~~l~~l~l~~~~~~~~~---~~~~~~~~~~~l~~l~l~~n~~~-----~~~~~~~~~~~~l~~l~l~~~n~~~~~   77 (127)
                      .+..+++|+.|++++|.+.-..   +.+..+..++.|+.|++++|.++     .++. .+..+++|+.|+++ +|.+...
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~-~n~i~~~  259 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLN-DCLLSAR  259 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECT-TCCCCHH
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECC-CCCCchh
Confidence            4556777888888888764111   22224467788888888888874     2333 45667888888888 8877654


Q ss_pred             cc----hhhc--cCCCCcEEEecCccccc-----cChhhhcCCccccEEeccCCccccc
Q psy8031          78 PS----TLFR--DCKKLVKLELQRNKLKY-----LPENLFESLKELYTLNLKNNQLENI  125 (127)
Q Consensus        78 ~~----~~~~--~~~~l~~l~l~~n~~~~-----~~~~~~~~~~~l~~l~l~~n~i~~~  125 (127)
                      ..    ..+.  .+++|+.+++++|.++.     ++..++.++++|+.|++++|+++..
T Consensus       260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            11    2222  26778888888888876     6666556678888888888887653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.27  E-value=5.2e-11  Score=83.10  Aligned_cols=98  Identities=23%  Similarity=0.331  Sum_probs=79.4

Q ss_pred             ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031          11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK   90 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~   90 (127)
                      .+++.|++++|.+.  .+|..++   ++++.|++++|.++.++.    .+++|+.|+++ +|.++.++.    .+++|+.
T Consensus        40 ~~l~~L~ls~n~L~--~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls-~N~l~~lp~----~l~~L~~  105 (622)
T 3g06_A           40 NGNAVLNVGESGLT--TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVS-GNQLTSLPV----LPPGLLE  105 (622)
T ss_dssp             HCCCEEECCSSCCS--CCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEEC-SCCCSCCCC----CCTTCCE
T ss_pred             CCCcEEEecCCCcC--ccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcC-CCcCCcCCC----CCCCCCE
Confidence            35889999999987  8998763   789999999999998887    36899999999 999998876    4689999


Q ss_pred             EEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        91 l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      +++++|.++.+|.    .+++|+.|++++|.++.+|
T Consensus       106 L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp  137 (622)
T 3g06_A          106 LSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLP  137 (622)
T ss_dssp             EEECSCCCCCCCC----CCTTCCEEECCSSCCSCCC
T ss_pred             EECcCCcCCCCCC----CCCCcCEEECCCCCCCcCC
Confidence            9999999998876    2345566666666555544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.26  E-value=4.5e-11  Score=80.65  Aligned_cols=81  Identities=27%  Similarity=0.396  Sum_probs=42.8

Q ss_pred             CCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCccccccChhhhcCCccccEEe
Q psy8031          37 PLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN  116 (127)
Q Consensus        37 ~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~  116 (127)
                      +.++++++++|+++.++  .|..+++|+.++++ +|.+..++..    ..+++.+++++|.++.+|.  ++.+++|+.++
T Consensus       131 ~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~-~N~l~~lp~~----~~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVD-NNSLKKLPDL----PPSLEFIAAGNNQLEELPE--LQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCCSSCC--CCTTCTTCCEEECC-SSCCSCCCCC----CTTCCEEECCSSCCSSCCC--CTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCCCCc--ccCCCCCCCEEECC-CCcCcccCCC----cccccEEECcCCcCCcCcc--ccCCCCCCEEE
Confidence            34555555555555554  15555556666665 5555554432    1355555555555555542  35555555555


Q ss_pred             ccCCcccccC
Q psy8031         117 LKNNQLENIT  126 (127)
Q Consensus       117 l~~n~i~~~~  126 (127)
                      +++|.++.+|
T Consensus       202 l~~N~l~~l~  211 (454)
T 1jl5_A          202 ADNNSLKKLP  211 (454)
T ss_dssp             CCSSCCSSCC
T ss_pred             CCCCcCCcCC
Confidence            5555555443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.24  E-value=3.4e-14  Score=86.03  Aligned_cols=109  Identities=16%  Similarity=0.199  Sum_probs=85.3

Q ss_pred             CccceEEEecCCcCc-----ccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhcc
Q psy8031          10 MKYLQVIKISYHKDS-----LKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD   84 (127)
Q Consensus        10 ~~~l~~l~l~~~~~~-----~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~   84 (127)
                      ...++.++++.+.+.     +..+|. .|..++.++++++++|.++.++  .+..+++|+.++++ +|.+..++.. +..
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~-~n~l~~l~~~-~~~   91 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLG-RNLIKKIENL-DAV   91 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEE-EEEECSCSSH-HHH
T ss_pred             cccccCcchheeEeccccCcHhhhhH-HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECC-CCCcccccch-hhc
Confidence            344444444444442     223333 4588999999999999999987  47788999999999 9999988764 455


Q ss_pred             CCCCcEEEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031          85 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI  125 (127)
Q Consensus        85 ~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~  125 (127)
                      +++|+.+++++|.++.++.  +..+++|+.+++++|.++.+
T Consensus        92 ~~~L~~L~L~~N~l~~l~~--~~~l~~L~~L~l~~N~i~~~  130 (198)
T 1ds9_A           92 ADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNW  130 (198)
T ss_dssp             HHHCSEEEEEEEECCCHHH--HHHHHHSSEEEESEEECCCH
T ss_pred             CCcCCEEECcCCcCCcCCc--cccCCCCCEEECCCCcCCch
Confidence            6899999999999998863  57889999999999998864

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.18  E-value=1.4e-11  Score=79.71  Aligned_cols=38  Identities=16%  Similarity=0.047  Sum_probs=15.4

Q ss_pred             cCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCC
Q psy8031           8 AEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES   47 (127)
Q Consensus         8 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n   47 (127)
                      ..+++|+.|++++|.+.  ......+..+++|++|++++|
T Consensus       115 ~~~~~L~~L~L~~~~l~--~~~~~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B          115 SQCSKLQNLSLEGLRLS--DPIVNTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             TTBCCCSEEECTTCBCC--HHHHHHHTTCTTCSEEECTTC
T ss_pred             hhCCCCCEEeCcCcccC--HHHHHHHhcCCCCCEEECCCC
Confidence            34444444444444432  222222333444444444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.16  E-value=1.5e-11  Score=81.10  Aligned_cols=16  Identities=13%  Similarity=0.125  Sum_probs=7.0

Q ss_pred             cCCccceEEEecCCcC
Q psy8031           8 AEMKYLQVIKISYHKD   23 (127)
Q Consensus         8 ~~~~~l~~l~l~~~~~   23 (127)
                      ..+++|+.|++++|.+
T Consensus        91 ~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             TTCTTCCEEECCSCCC
T ss_pred             hhCCcccEEECCCCcC
Confidence            3344444444444443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.15  E-value=1.5e-10  Score=76.22  Aligned_cols=104  Identities=17%  Similarity=0.338  Sum_probs=91.7

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      |+..+|.++..++.+.+..+ +.  .++..+|.++.+|+.+.+.++.++.+...+|.++.+|+.+.++ .+ ++.++..+
T Consensus       254 I~~~aF~~~~~l~~i~l~~~-i~--~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp-~~-l~~I~~~a  328 (379)
T 4h09_A          254 IGSFLLQNCTALKTLNFYAK-VK--TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP-TA-LKTIQVYA  328 (379)
T ss_dssp             ECTTTTTTCTTCCEEEECCC-CS--EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC-TT-CCEECTTT
T ss_pred             eCccccceeehhcccccccc-ce--eccccccccccccccccccccccceehhhhhcCCCCCCEEEcC-cc-ccEEHHHH
Confidence            56789999999999999765 44  8999999999999999999999999999999999999999998 54 88999999


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCCcc
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESLKE  111 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~  111 (127)
                      |.+|.+|+.+.+..+ ++.+...+|.++..
T Consensus       329 F~~C~~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          329 FKNCKALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             TTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             hhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence            999999999988654 78888888888753

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.14  E-value=4.3e-11  Score=77.44  Aligned_cols=110  Identities=15%  Similarity=0.233  Sum_probs=70.2

Q ss_pred             CCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCC-CCeee-cchhhccCC
Q psy8031           9 EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHK-KLTSL-PSTLFRDCK   86 (127)
Q Consensus         9 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n-~~~~~-~~~~~~~~~   86 (127)
                      .+++|+.|++++|.+....++ ..+..+++|+++++++|.++......+..+++|+.|+++ ++ .++.. .+..+..++
T Consensus        91 ~~~~L~~L~L~~~~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~-~~~~l~~~~l~~~~~~~~  168 (336)
T 2ast_B           91 SPFRVQHMDLSNSVIEVSTLH-GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS-GCSGFSEFALQTLLSSCS  168 (336)
T ss_dssp             CCBCCCEEECTTCEECHHHHH-HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT-TCBSCCHHHHHHHHHHCT
T ss_pred             cCCCCCEEEccCCCcCHHHHH-HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC-CCCCCCHHHHHHHHhcCC
Confidence            467777777777765411133 344677778888887777764444446667778888887 66 55531 122345677


Q ss_pred             CCcEEEecCc-cccc--cChhhhcCCc-cccEEeccCCc
Q psy8031          87 KLVKLELQRN-KLKY--LPENLFESLK-ELYTLNLKNNQ  121 (127)
Q Consensus        87 ~l~~l~l~~n-~~~~--~~~~~~~~~~-~l~~l~l~~n~  121 (127)
                      +|+.+++++| .++.  ++.. +..++ +|+.|++++|.
T Consensus       169 ~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          169 RLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGYR  206 (336)
T ss_dssp             TCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSCG
T ss_pred             CCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCCCc
Confidence            7888888877 7764  3333 46677 78888887773

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.14  E-value=2e-10  Score=76.06  Aligned_cols=112  Identities=22%  Similarity=0.371  Sum_probs=87.0

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      |+.++|.++..|+.+.+... +.  .++.++|.++.+|+.+.+.. .++.+...+|.++.+|+.+.++ .+ +..++..+
T Consensus       279 I~~~aF~~c~~L~~i~l~~~-i~--~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~ip-~s-v~~I~~~a  352 (394)
T 4gt6_A          279 IGTGAFMNCPALQDIEFSSR-IT--ELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLERIAIP-SS-VTKIPESA  352 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEEC-TT-CCBCCGGG
T ss_pred             ecCcccccccccccccCCCc-cc--ccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEEEEC-cc-cCEEhHhH
Confidence            56789999999999999754 44  89999999999999999976 5889999999999999999998 55 88899999


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcc
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL  122 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i  122 (127)
                      |.+|.+|+.+.+.++... +  ..|..+..|+.+.+..|.+
T Consensus       353 F~~C~~L~~i~~~~~~~~-~--~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          353 FSNCTALNNIEYSGSRSQ-W--NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             GTTCTTCCEEEESSCHHH-H--HTCBCCCCC----------
T ss_pred             hhCCCCCCEEEECCceee-h--hhhhccCCCCEEEeCCCCE
Confidence            999999999999987533 2  2356778888888876643

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.12  E-value=8.7e-11  Score=78.89  Aligned_cols=113  Identities=13%  Similarity=0.185  Sum_probs=48.7

Q ss_pred             hcCCccceEEEecCCcCccccc-CccccCCCC----CCcEEEecCCcccccC----hhhhcCCCCCcEEEecCCCCCeee
Q psy8031           7 FAEMKYLQVIKISYHKDSLKEL-PSGLFANLP----LLNTVILGESSIAELP----SDLFWNSTNITNIVLTGHKKLTSL   77 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~~----~l~~l~l~~n~~~~~~----~~~~~~~~~l~~l~l~~~n~~~~~   77 (127)
                      +..+++|+.|++++|.+.  .. +..++..+.    .++++++++|.++...    +..+..+++|+.++++ +|.+...
T Consensus        52 l~~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls-~n~i~~~  128 (461)
T 1z7x_W           52 LRVNPALAELNLRSNELG--DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS-DNLLGDA  128 (461)
T ss_dssp             HHTCTTCCEEECTTCCCH--HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECC-SSBCHHH
T ss_pred             HHhCCCcCEEeCCCCcCC--hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECC-CCcCchH
Confidence            444555555555555543  21 111222233    4555555555555211    2334455555555555 5554422


Q ss_pred             cchhh-----ccCCCCcEEEecCccccccC----hhhhcCCccccEEeccCCcc
Q psy8031          78 PSTLF-----RDCKKLVKLELQRNKLKYLP----ENLFESLKELYTLNLKNNQL  122 (127)
Q Consensus        78 ~~~~~-----~~~~~l~~l~l~~n~~~~~~----~~~~~~~~~l~~l~l~~n~i  122 (127)
                      ....+     ...++|+.+++++|.++...    ...+..+++|+.+++++|.+
T Consensus       129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  182 (461)
T 1z7x_W          129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI  182 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence            11111     11234555555555444321    11123344555555555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.11  E-value=3.2e-10  Score=75.10  Aligned_cols=89  Identities=21%  Similarity=0.335  Sum_probs=58.9

Q ss_pred             cCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCccccccChhhhc
Q psy8031          28 LPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFE  107 (127)
Q Consensus        28 ~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~  107 (127)
                      ++...|..+..|+.+.+.. .++.+...+|.++.+|+.+.++ .+ ++.++..+|.+|.+|+.+.+..+ ++.++..+|.
T Consensus       288 i~~~~F~~~~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp-~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~  363 (394)
T 4fs7_A          288 VPEKTFYGCSSLTEVKLLD-SVKFIGEEAFESCTSLVSIDLP-YL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ  363 (394)
T ss_dssp             ECTTTTTTCTTCCEEEECT-TCCEECTTTTTTCTTCCEECCC-TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred             ecccccccccccccccccc-ccceechhhhcCCCCCCEEEeC-Cc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence            3444555566666666654 3666666677777777777776 43 66777777777777777777655 6667777777


Q ss_pred             CCccccEEeccCC
Q psy8031         108 SLKELYTLNLKNN  120 (127)
Q Consensus       108 ~~~~l~~l~l~~n  120 (127)
                      +|.+|+.+++..+
T Consensus       364 ~C~~L~~i~lp~~  376 (394)
T 4fs7_A          364 GCINLKKVELPKR  376 (394)
T ss_dssp             TCTTCCEEEEEGG
T ss_pred             CCCCCCEEEECCC
Confidence            7777777776543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.10  E-value=3.2e-10  Score=75.11  Aligned_cols=106  Identities=21%  Similarity=0.276  Sum_probs=89.9

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      |+..+|.++.+|+.+.+..+ +.  .++..+|.++.+|+.+++.. .++.+...+|.++.+|+.+.++ .+ +..++..+
T Consensus       288 i~~~~F~~~~~L~~i~l~~~-i~--~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp-~~-l~~I~~~a  361 (394)
T 4fs7_A          288 VPEKTFYGCSSLTEVKLLDS-VK--FIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFP-LS-LRKIGANA  361 (394)
T ss_dssp             ECTTTTTTCTTCCEEEECTT-CC--EECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCC-TT-CCEECTTT
T ss_pred             eccccccccccccccccccc-cc--eechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEEC-cc-ccEehHHH
Confidence            56778999999999999865 44  89999999999999999975 5889999999999999999998 66 88999999


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCCccccEE
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTL  115 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l  115 (127)
                      |.+|.+|+.+.+..+ +..+. ..|.++++|+.+
T Consensus       362 F~~C~~L~~i~lp~~-~~~~~-~~F~~c~~L~~I  393 (394)
T 4fs7_A          362 FQGCINLKKVELPKR-LEQYR-YDFEDTTKFKWI  393 (394)
T ss_dssp             BTTCTTCCEEEEEGG-GGGGG-GGBCTTCEEEEE
T ss_pred             hhCCCCCCEEEECCC-CEEhh-heecCCCCCcEE
Confidence            999999999999765 44443 347888888765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.09  E-value=2.2e-11  Score=81.75  Aligned_cols=64  Identities=17%  Similarity=0.170  Sum_probs=34.6

Q ss_pred             CCCCCcEEEecCCCCCeeecchhhc-----cCCCCcEEEecCcccc-----ccChhhhcCCccccEEeccCCcccc
Q psy8031          59 NSTNITNIVLTGHKKLTSLPSTLFR-----DCKKLVKLELQRNKLK-----YLPENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        59 ~~~~l~~l~l~~~n~~~~~~~~~~~-----~~~~l~~l~l~~n~~~-----~~~~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      .+++|+.++++ +|.+.......+.     ..++|+.+++++|.++     .++.. +..+++|+.+++++|+++.
T Consensus       339 ~~~~L~~L~Ls-~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          339 QNRFLLELQIS-NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT-LLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HCSSCCEEECC-SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-HHHCCCCCEEECCSSSCCH
T ss_pred             hCCCccEEEcc-CCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH-HHhCCCccEEECCCCCCCH
Confidence            34566666666 6555543222121     1346666666666665     33333 3456667777777766553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.03  E-value=1.1e-10  Score=76.91  Aligned_cols=111  Identities=14%  Similarity=0.082  Sum_probs=59.3

Q ss_pred             ccceEEEecCCcCcccccCcccc-----CCCCCCcEEEecCCcccccChh----hhcCCCCCcEEEecCCCCCeeec---
Q psy8031          11 KYLQVIKISYHKDSLKELPSGLF-----ANLPLLNTVILGESSIAELPSD----LFWNSTNITNIVLTGHKKLTSLP---   78 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~~~~~-----~~~~~l~~l~l~~n~~~~~~~~----~~~~~~~l~~l~l~~~n~~~~~~---   78 (127)
                      .+|+.|++++|.+.  ......+     ...+.|+.|++++|.++.....    .+...++|+.|+++ +|.+...+   
T Consensus       126 ~~L~~L~Ls~n~l~--~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls-~N~l~~~g~~~  202 (372)
T 3un9_A          126 LRARKLGLQLNSLG--PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL-HTGLGDEGLEL  202 (372)
T ss_dssp             HTEEEEECCSSCCC--HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECT-TSSCHHHHHHH
T ss_pred             HhccHhhcCCCCCC--HHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCC-CCCCCcHHHHH
Confidence            34555555555543  2222222     2345667777777766542211    22445667777777 66665432   


Q ss_pred             -chhhccCCCCcEEEecCccccccChh----hhcCCccccEEeccCCcccc
Q psy8031          79 -STLFRDCKKLVKLELQRNKLKYLPEN----LFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        79 -~~~~~~~~~l~~l~l~~n~~~~~~~~----~~~~~~~l~~l~l~~n~i~~  124 (127)
                       ...+...++|+.+++++|.+++....    .+...+.|+.|++++|.|+.
T Consensus       203 L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          203 LAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence             12233455677777777776643221    12344667777777776653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.95  E-value=3e-10  Score=74.90  Aligned_cols=111  Identities=14%  Similarity=0.134  Sum_probs=75.0

Q ss_pred             ccceEEEecCCcCcccccC-ccccCCCCCCcEEEecCCcccccChhhh-----cCCCCCcEEEecCCCCCeeecchh---
Q psy8031          11 KYLQVIKISYHKDSLKELP-SGLFANLPLLNTVILGESSIAELPSDLF-----WNSTNITNIVLTGHKKLTSLPSTL---   81 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~-~~~~~~~~~l~~l~l~~n~~~~~~~~~~-----~~~~~l~~l~l~~~n~~~~~~~~~---   81 (127)
                      +.|+.|++++|.+.  ... ..+...+.+++.|++++|.++......+     ...+.|+.|+++ +|.++......   
T Consensus       101 ~~L~~L~Ls~n~l~--~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls-~n~l~~~~~~~l~~  177 (372)
T 3un9_A          101 HALDEVNLASCQLD--PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLS-NNPLTAAGVAVLME  177 (372)
T ss_dssp             SCEEEEECTTCCCC--HHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECC-SSCCHHHHHHHHHH
T ss_pred             CCceEEEecCCCCC--HHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCC-CCCCChHHHHHHHH
Confidence            67888888888764  221 1222345678888888888875443322     345788999999 88886533222   


Q ss_pred             -hccCCCCcEEEecCccccccC----hhhhcCCccccEEeccCCcccc
Q psy8031          82 -FRDCKKLVKLELQRNKLKYLP----ENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        82 -~~~~~~l~~l~l~~n~~~~~~----~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                       +...++|+.+++++|.+++..    ...+...+.|+.|++++|.|+.
T Consensus       178 ~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          178 GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence             245678999999999887543    1224566789999999998864

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.68  E-value=1.1e-08  Score=61.18  Aligned_cols=117  Identities=9%  Similarity=0.102  Sum_probs=83.0

Q ss_pred             hhhcCCccceEEEecCC-cCccc---ccCccccCCCCCCcEEEecCCcccccC----hhhhcCCCCCcEEEecCCCCCee
Q psy8031           5 DLFAEMKYLQVIKISYH-KDSLK---ELPSGLFANLPLLNTVILGESSIAELP----SDLFWNSTNITNIVLTGHKKLTS   76 (127)
Q Consensus         5 ~~~~~~~~l~~l~l~~~-~~~~~---~~~~~~~~~~~~l~~l~l~~n~~~~~~----~~~~~~~~~l~~l~l~~~n~~~~   76 (127)
                      .++...+.|+.|++++| .+...   .+. ..+...+.+++|++++|.+....    ...+...++|+.|+++ +|.+..
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~-~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~-~N~i~~  107 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE-SNFISG  107 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC-SSCCCH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHH-HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECc-CCcCCH
Confidence            35677899999999999 76411   112 23356789999999999988532    1234456789999999 998875


Q ss_pred             ecc----hhhccCCCCcEEEe--cCccccccCh----hhhcCCccccEEeccCCccc
Q psy8031          77 LPS----TLFRDCKKLVKLEL--QRNKLKYLPE----NLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        77 ~~~----~~~~~~~~l~~l~l--~~n~~~~~~~----~~~~~~~~l~~l~l~~n~i~  123 (127)
                      -..    ..+...+.|+.+++  ++|.+.+-..    ..+...+.|+.|++++|.+.
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            321    22345678999999  8898874321    22345678999999999875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.49  E-value=1.9e-07  Score=64.49  Aligned_cols=90  Identities=17%  Similarity=0.084  Sum_probs=54.6

Q ss_pred             CCCCCCcEEEecCCc--ccccC-hhhhcCCCCCcEEEecCCCCCeeec-chhhccCCCCcEEEecCcccccc-ChhhhcC
Q psy8031          34 ANLPLLNTVILGESS--IAELP-SDLFWNSTNITNIVLTGHKKLTSLP-STLFRDCKKLVKLELQRNKLKYL-PENLFES  108 (127)
Q Consensus        34 ~~~~~l~~l~l~~n~--~~~~~-~~~~~~~~~l~~l~l~~~n~~~~~~-~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~~  108 (127)
                      ..+++|++++++.+.  ++... ......+++|+.|+++ ++.++... +..+.++++|+.+++++|.++.. .......
T Consensus       433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~-~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  511 (592)
T 3ogk_B          433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG-YVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK  511 (592)
T ss_dssp             HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEEC-SCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred             HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeecc-CCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence            446667777765322  33221 1222346778888888 77765422 22335677888888888876532 1222356


Q ss_pred             CccccEEeccCCcccc
Q psy8031         109 LKELYTLNLKNNQLEN  124 (127)
Q Consensus       109 ~~~l~~l~l~~n~i~~  124 (127)
                      +++|+.|++++|+++.
T Consensus       512 l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          512 LPSLRYLWVQGYRASM  527 (592)
T ss_dssp             CSSCCEEEEESCBCCT
T ss_pred             cCccCeeECcCCcCCH
Confidence            7888888888887764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.47  E-value=9.4e-08  Score=66.04  Aligned_cols=65  Identities=9%  Similarity=0.104  Sum_probs=31.6

Q ss_pred             CCccceEEEecCCcCcccccCc----cccCCCCCCcEEEecCCcccccCh----hhhcCCCCCcEEEecCCCCCee
Q psy8031           9 EMKYLQVIKISYHKDSLKELPS----GLFANLPLLNTVILGESSIAELPS----DLFWNSTNITNIVLTGHKKLTS   76 (127)
Q Consensus         9 ~~~~l~~l~l~~~~~~~~~~~~----~~~~~~~~l~~l~l~~n~~~~~~~----~~~~~~~~l~~l~l~~~n~~~~   76 (127)
                      .+++|+.|++++|.+.  ....    .....+++|+.|++++|.++.+..    ..+..+++|+.|+++ ++.+..
T Consensus       162 ~~~~L~~L~L~~~~~~--~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~-~~~~~~  234 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFS--EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG-DFEILE  234 (592)
T ss_dssp             HCTTCSEEECTTCEEE--CCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS-SCBGGG
T ss_pred             hCCCCCEEECcccccc--CcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc-CccHHH
Confidence            4566666666666542  2211    122345556666666655542221    123345566666666 554433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.44  E-value=1.9e-07  Score=64.45  Aligned_cols=88  Identities=11%  Similarity=0.104  Sum_probs=53.6

Q ss_pred             CCCCCCcEEEecCCcccccChhhhc-CCCCCcEEEecCCCCCeeecchhh-ccCCCCcEEEecCccccccCh-hhhcCCc
Q psy8031          34 ANLPLLNTVILGESSIAELPSDLFW-NSTNITNIVLTGHKKLTSLPSTLF-RDCKKLVKLELQRNKLKYLPE-NLFESLK  110 (127)
Q Consensus        34 ~~~~~l~~l~l~~n~~~~~~~~~~~-~~~~l~~l~l~~~n~~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~-~~~~~~~  110 (127)
                      ..+++|+.|++++ .++......+. .+++|+.|+++ +|.++......+ .++++|+.+++++|.+++... .....++
T Consensus       429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~-~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~  506 (594)
T 2p1m_B          429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVA-FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE  506 (594)
T ss_dssp             HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEE-SCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred             hhCCCccEEeecC-cccHHHHHHHHHhchhccEeecc-CCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence            4566677777755 44432222222 26778888888 777654322222 457788888888887753322 2234567


Q ss_pred             cccEEeccCCccc
Q psy8031         111 ELYTLNLKNNQLE  123 (127)
Q Consensus       111 ~l~~l~l~~n~i~  123 (127)
                      +|+.|++++|+++
T Consensus       507 ~L~~L~l~~~~~~  519 (594)
T 2p1m_B          507 TMRSLWMSSCSVS  519 (594)
T ss_dssp             GSSEEEEESSCCB
T ss_pred             CCCEEeeeCCCCC
Confidence            8888888888763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.37  E-value=2.9e-07  Score=63.58  Aligned_cols=12  Identities=25%  Similarity=0.329  Sum_probs=6.4

Q ss_pred             CccccEEeccCC
Q psy8031         109 LKELYTLNLKNN  120 (127)
Q Consensus       109 ~~~l~~l~l~~n  120 (127)
                      +++|+.|++++|
T Consensus       210 ~~~L~~L~L~~~  221 (594)
T 2p1m_B          210 CPNLKSLKLNRA  221 (594)
T ss_dssp             CTTCCEEECCTT
T ss_pred             CCCCcEEecCCC
Confidence            455555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.36  E-value=5.8e-07  Score=56.78  Aligned_cols=80  Identities=23%  Similarity=0.289  Sum_probs=47.5

Q ss_pred             CCCCCcEEEecCCcccccCh--hhhcCCCCCcEEEecCCCCCeeecc-hhhccCCCCcEEEecCccccc-cC------hh
Q psy8031          35 NLPLLNTVILGESSIAELPS--DLFWNSTNITNIVLTGHKKLTSLPS-TLFRDCKKLVKLELQRNKLKY-LP------EN  104 (127)
Q Consensus        35 ~~~~l~~l~l~~n~~~~~~~--~~~~~~~~l~~l~l~~~n~~~~~~~-~~~~~~~~l~~l~l~~n~~~~-~~------~~  104 (127)
                      .++.|+.|++++|+++.++.  ..+..+++|+.|+++ +|.+..+.. ..+.++ +|+.|++++|.+.. ++      ..
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls-~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLS-GNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECT-TSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECC-CCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            36677777777777776542  234456777777777 777766522 122223 67777777777652 32      12


Q ss_pred             hhcCCccccEEe
Q psy8031         105 LFESLKELYTLN  116 (127)
Q Consensus       105 ~~~~~~~l~~l~  116 (127)
                      ++..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            344556666665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.35  E-value=3.4e-07  Score=57.82  Aligned_cols=81  Identities=16%  Similarity=0.233  Sum_probs=60.0

Q ss_pred             cCCccceEEEecCCcCcccccCc--cccCCCCCCcEEEecCCcccccCh-hhhcCCCCCcEEEecCCCCCee-ec-----
Q psy8031           8 AEMKYLQVIKISYHKDSLKELPS--GLFANLPLLNTVILGESSIAELPS-DLFWNSTNITNIVLTGHKKLTS-LP-----   78 (127)
Q Consensus         8 ~~~~~l~~l~l~~~~~~~~~~~~--~~~~~~~~l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~~n~~~~-~~-----   78 (127)
                      .+++.|+.|++++|.+.  .++.  ..+..+++|+.|++++|+++.+.. ..+..+ .|+.|.+. +|.+.. ++     
T Consensus       167 ~~l~~L~~L~Ls~N~l~--~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~-~Npl~~~~~~~~~y  242 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLY--RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLD-GNSLCDTFRDQSTY  242 (267)
T ss_dssp             HHCTTCCEEECTTSCCC--CCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECT-TSTTGGGCSSHHHH
T ss_pred             hhCCCCCEEECCCCCCC--CCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEcc-CCcCccccCcchhH
Confidence            45789999999999986  5543  445689999999999999997632 224444 89999999 998863 33     


Q ss_pred             -chhhccCCCCcEEE
Q psy8031          79 -STLFRDCKKLVKLE   92 (127)
Q Consensus        79 -~~~~~~~~~l~~l~   92 (127)
                       ...+..+++|+.|+
T Consensus       243 ~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          243 ISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHCTTCCEES
T ss_pred             HHHHHHHCcccCeEC
Confidence             13345677887765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.20  E-value=1.1e-05  Score=53.17  Aligned_cols=40  Identities=15%  Similarity=0.211  Sum_probs=21.1

Q ss_pred             hhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCccc
Q psy8031           6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA   50 (127)
Q Consensus         6 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~   50 (127)
                      ++..+++|+.|.++++.-.  .+++  +. +++|+.|++..+.++
T Consensus       167 ll~~~P~L~~L~L~g~~~l--~l~~--~~-~~~L~~L~L~~~~l~  206 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNL--SIGK--KP-RPNLKSLEIISGGLP  206 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTC--BCCS--CB-CTTCSEEEEECSBCC
T ss_pred             HHhcCCCCcEEEEeCCCCc--eecc--cc-CCCCcEEEEecCCCC
Confidence            4456677777777776311  2332  12 455555555555443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.19  E-value=4.4e-06  Score=49.55  Aligned_cols=82  Identities=12%  Similarity=0.065  Sum_probs=36.8

Q ss_pred             CCcEEEecCCcccccChhhhcCCCCCcEEEecCCC-CCeeecchhhcc----CCCCcEEEecCc-cccccChhhhcCCcc
Q psy8031          38 LLNTVILGESSIAELPSDLFWNSTNITNIVLTGHK-KLTSLPSTLFRD----CKKLVKLELQRN-KLKYLPENLFESLKE  111 (127)
Q Consensus        38 ~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n-~~~~~~~~~~~~----~~~l~~l~l~~n-~~~~~~~~~~~~~~~  111 (127)
                      .|+.++++++.++...-..+..+++|+.|+++ .+ .++.-.-.....    +++|+.|+++++ .+++-.-..+..+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~-~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLC-KCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEE-SCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeC-CCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            35555555555544332233445555555555 33 333221111111    124555555554 354333333344555


Q ss_pred             ccEEeccCC
Q psy8031         112 LYTLNLKNN  120 (127)
Q Consensus       112 l~~l~l~~n  120 (127)
                      |+.|+++++
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.17  E-value=6.9e-06  Score=48.70  Aligned_cols=88  Identities=11%  Similarity=0.029  Sum_probs=64.1

Q ss_pred             ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCc-ccccChhhhcCC----CCCcEEEecCCC-CCeeecchhhcc
Q psy8031          11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESS-IAELPSDLFWNS----TNITNIVLTGHK-KLTSLPSTLFRD   84 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~~~----~~l~~l~l~~~n-~~~~~~~~~~~~   84 (127)
                      -.|+.|++++|.+.  ...-..+.+++.|+.|++++|. ++.-.-..+...    ++|+.|+++ .+ .++.-.-..+..
T Consensus        61 ~~L~~LDLs~~~It--d~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls-~C~~ITD~Gl~~L~~  137 (176)
T 3e4g_A           61 YKIQAIDATDSCIM--SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEII-SCGNVTDKGIIALHH  137 (176)
T ss_dssp             CCEEEEEEESCCCC--GGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEE-SCTTCCHHHHHHGGG
T ss_pred             ceEeEEeCcCCCcc--HHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcC-CCCcCCHHHHHHHhc
Confidence            46999999999876  4443445789999999999984 775433334432    479999999 64 677654444567


Q ss_pred             CCCCcEEEecCc-ccccc
Q psy8031          85 CKKLVKLELQRN-KLKYL  101 (127)
Q Consensus        85 ~~~l~~l~l~~n-~~~~~  101 (127)
                      +++|+.|+++++ .+++.
T Consensus       138 ~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          138 FRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             CTTCCEEEEESCTTCCCH
T ss_pred             CCCCCEEECCCCCCCCch
Confidence            899999999987 46643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.03  E-value=9.8e-06  Score=45.74  Aligned_cols=56  Identities=29%  Similarity=0.427  Sum_probs=47.7

Q ss_pred             cEEEecCCccc--ccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCcccc
Q psy8031          40 NTVILGESSIA--ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK   99 (127)
Q Consensus        40 ~~l~l~~n~~~--~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~   99 (127)
                      ..++-+++.++  .+|...   ..+++.|+++ +|.++.++...|..+.+|+.+++.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls-~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF---PVDTTELVLT-GNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC---CTTCSEEECT-TSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC---CcCCCEEECC-CCcCCccChhhhhhccccCEEEecCCCee
Confidence            47788888888  888642   3578999999 99999999999999999999999999875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.03  E-value=1.2e-05  Score=53.00  Aligned_cols=113  Identities=17%  Similarity=0.177  Sum_probs=70.8

Q ss_pred             CccceEEEecCCcCcccccCccccCCCCCCcEEEecC--Cc------ccccChhhh--cCCCCCcEEEecCCCCCeeec-
Q psy8031          10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGE--SS------IAELPSDLF--WNSTNITNIVLTGHKKLTSLP-   78 (127)
Q Consensus        10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~--n~------~~~~~~~~~--~~~~~l~~l~l~~~n~~~~~~-   78 (127)
                      +++|+.|.+..+.+....+..-.-..+++|+.|+++.  +.      +..+.. .+  ..+++|+.|.+. ++.+..-. 
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~-~~~i~~~~~  269 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIV-DAEEQNVVV  269 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEE-SCTTHHHHH
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCC-CCCCchHHH
Confidence            6789999999887641111111113688999999853  11      212211 12  246899999999 88776321 


Q ss_pred             chhh--ccCCCCcEEEecCccccccChhhh----cCCccccEEeccCCcccc
Q psy8031          79 STLF--RDCKKLVKLELQRNKLKYLPENLF----ESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        79 ~~~~--~~~~~l~~l~l~~n~~~~~~~~~~----~~~~~l~~l~l~~n~i~~  124 (127)
                      ...+  ..+++|+.|+++.|.+++.....+    ..+++|+.|+++.|.++.
T Consensus       270 ~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            2222  135789999999998875322111    345789999999998763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.98  E-value=1.1e-05  Score=48.15  Aligned_cols=92  Identities=16%  Similarity=0.188  Sum_probs=66.8

Q ss_pred             ccCCCCCCcEEEecCC-cccccC----hhhhcCCCCCcEEEecCCCCCeeecc----hhhccCCCCcEEEecCccccccC
Q psy8031          32 LFANLPLLNTVILGES-SIAELP----SDLFWNSTNITNIVLTGHKKLTSLPS----TLFRDCKKLVKLELQRNKLKYLP  102 (127)
Q Consensus        32 ~~~~~~~l~~l~l~~n-~~~~~~----~~~~~~~~~l~~l~l~~~n~~~~~~~----~~~~~~~~l~~l~l~~n~~~~~~  102 (127)
                      .+...+.++.|++++| .+....    ...+...++++.|+++ .|.+..-..    ..+...+.|+.+++++|.+.+-.
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls-~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV-GTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECT-TSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECc-CCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            4567889999999999 887432    2235567899999999 998874322    22334578999999999997532


Q ss_pred             h----hhhcCCccccEEec--cCCcccc
Q psy8031         103 E----NLFESLKELYTLNL--KNNQLEN  124 (127)
Q Consensus       103 ~----~~~~~~~~l~~l~l--~~n~i~~  124 (127)
                      .    ..+...+.|+.|++  ++|.++.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence            1    22355678999999  8898864

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.95  E-value=2.3e-05  Score=44.17  Aligned_cols=58  Identities=12%  Similarity=0.173  Sum_probs=47.6

Q ss_pred             eEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCe
Q psy8031          14 QVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLT   75 (127)
Q Consensus        14 ~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~   75 (127)
                      ..++.+++++....+|..+   ..+++.|++++|+++.++...|..+++|+.+++. +|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~-~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLG-ANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECC-SSCCB
T ss_pred             CEEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEec-CCCee
Confidence            4678888875322677654   4569999999999999999999999999999999 88775

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=97.34  E-value=0.0006  Score=36.61  Aligned_cols=42  Identities=21%  Similarity=0.394  Sum_probs=22.0

Q ss_pred             ccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEec
Q psy8031          27 ELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLT   69 (127)
Q Consensus        27 ~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~   69 (127)
                      .+..++|.++..|+.+.+.. .++.|...+|.++.+|+.+.+.
T Consensus        10 ~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~   51 (100)
T 2lz0_A           10 GMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILT   51 (100)
T ss_dssp             SSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEEC
T ss_pred             EecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEc
Confidence            45555555555555555543 3445555555555555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.85  E-value=0.0042  Score=37.48  Aligned_cols=113  Identities=13%  Similarity=0.109  Sum_probs=71.6

Q ss_pred             hhcCCccceEEEecCC-cCcccccC----ccccCCCCCCcEEEecCCcccccCh----hhhcCCCCCcEEEecCCCCCee
Q psy8031           6 LFAEMKYLQVIKISYH-KDSLKELP----SGLFANLPLLNTVILGESSIAELPS----DLFWNSTNITNIVLTGHKKLTS   76 (127)
Q Consensus         6 ~~~~~~~l~~l~l~~~-~~~~~~~~----~~~~~~~~~l~~l~l~~n~~~~~~~----~~~~~~~~l~~l~l~~~n~~~~   76 (127)
                      +..+-+.|+.|+++++ ++.  ...    ...+..-+.++.|++++|++.....    .++..-.+|+.|+++ .|.+..
T Consensus        36 ll~~n~~L~~L~L~~nn~ig--d~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~-~N~Ig~  112 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVS--KERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVE-SNFLTP  112 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSC--HHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC-SSBCCH
T ss_pred             HHhcCCCccEEECCCCCCCC--HHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecC-CCcCCH
Confidence            4455678999999885 653  211    2233556789999999999885322    234455789999999 998874


Q ss_pred             ecch----hhccCCCCcEEEecCc---cccc-----cChhhhcCCccccEEeccCCcc
Q psy8031          77 LPST----LFRDCKKLVKLELQRN---KLKY-----LPENLFESLKELYTLNLKNNQL  122 (127)
Q Consensus        77 ~~~~----~~~~~~~l~~l~l~~n---~~~~-----~~~~~~~~~~~l~~l~l~~n~i  122 (127)
                      -.-.    .+..-..|+.++++++   .+..     +-. ++..-+.|+.++++.|.+
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCc
Confidence            3322    1223356899999764   3332     211 223446788888887754

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=96.73  E-value=0.0058  Score=32.70  Aligned_cols=47  Identities=23%  Similarity=0.292  Sum_probs=36.4

Q ss_pred             CCchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCccc
Q psy8031           1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIA   50 (127)
Q Consensus         1 ~i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~   50 (127)
                      +|...+|.+|..|+.+.|..+ +.  .+..++|.++.+|+.+.+......
T Consensus        10 ~I~~~aF~~c~~L~~i~iP~~-v~--~Ig~~aF~~C~~L~~i~~~~~~P~   56 (100)
T 2lz0_A           10 GMDKSLFAGNTVIREITVQPN-IG--LLYDGMFSGCTALEKLILTGEDPS   56 (100)
T ss_dssp             SSCSCTTTTCTTCCCEEECTT-SS--CCCTTSSTTCTTCCCEEECCSCGG
T ss_pred             EecHHHhcCCCCCcEEEcCCc-hh--eEcHHHHhccCCccEEEEcCCCCC
Confidence            367788888888888888876 23  788888888888888888765443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.61  E-value=0.016  Score=34.90  Aligned_cols=87  Identities=14%  Similarity=0.092  Sum_probs=59.5

Q ss_pred             cCCCCCCcEEEecCC-ccccc----ChhhhcCCCCCcEEEecCCCCCeeecch----hhccCCCCcEEEecCccccccCh
Q psy8031          33 FANLPLLNTVILGES-SIAEL----PSDLFWNSTNITNIVLTGHKKLTSLPST----LFRDCKKLVKLELQRNKLKYLPE  103 (127)
Q Consensus        33 ~~~~~~l~~l~l~~n-~~~~~----~~~~~~~~~~l~~l~l~~~n~~~~~~~~----~~~~~~~l~~l~l~~n~~~~~~~  103 (127)
                      ...-+.|+.|+++++ ++..-    -..++..-..|+.|+++ .|.+....-.    ++..-+.|+.|+++.|.+.+-..
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~-~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLA-NTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECT-TSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEcc-CCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            345678999999985 77642    12345566889999999 9988743322    22334689999999999974322


Q ss_pred             h----hhcCCccccEEeccCC
Q psy8031         104 N----LFESLKELYTLNLKNN  120 (127)
Q Consensus       104 ~----~~~~~~~l~~l~l~~n  120 (127)
                      .    .+..-+.|+.|++++|
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHhhCCceeEEECCCC
Confidence            2    1233456999999765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	127
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 6e-07
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query: 71  HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
           +  L  LP+ +F      V L++ R ++  LP    E+LK+L   +  N +
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 3e-04
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 65  NIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
            + L    K+T +PS L R+    ++L     KL+ + +  F    +L  + +  N 
Sbjct: 11  RVFLCQESKVTEIPSDLPRN---AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 64

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.9 bits (102), Expect = 1e-06
 Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 4/99 (4%)

Query: 24  SLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFR 83
            L+++P  L  +  LL+   L  + I E+    F N  N+  ++L  + K++ +    F 
Sbjct: 21  GLEKVPKDLPPDTALLD---LQNNKITEIKDGDFKNLKNLHTLIL-INNKISKISPGAFA 76

Query: 84  DCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
              KL +L L +N+LK LPE + ++L+EL     +  ++
Sbjct: 77  PLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV 115

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.0 bits (79), Expect = 0.001
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 71  HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
              L  +P  L  D      L+LQ NK+  + +  F++LK L+TL L NN++  I
Sbjct: 19  DLGLEKVPKDLPPD---TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 33.9 bits (76), Expect = 0.003
 Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 27/143 (18%)

Query: 3   PKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTN 62
               F  +K L  + +  +   + ++  G FA L  L  + L ++ + ELP  +      
Sbjct: 47  KDGDFKNLKNLHTLILINN--KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQE 104

Query: 63  ITN----------------------IVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKY 100
           +                         + T   K + + +  F+  KKL  + +    +  
Sbjct: 105 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 164

Query: 101 LPENLFESLKELYTLNLKNNQLE 123
           +P+ L  SL EL+   L  N++ 
Sbjct: 165 IPQGLPPSLTELH---LDGNKIT 184

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 4e-05
 Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 71  HKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ 121
            + LT+LP  L +D      L L  N L             L  LNL   +
Sbjct: 19  KRNLTALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.9 bits (81), Expect = 5e-04
 Identities = 15/103 (14%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 20  YHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS 79
             ++ +KE+ + +F  L  L T+ L ++ I+ +    F +  ++T++ L  +    +   
Sbjct: 85  LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144

Query: 80  TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQL 122
             F +  +  K  L     +         ++++   +L +++ 
Sbjct: 145 AWFAEWLR--KKSLNGGAARC---GAPSKVRDVQIKDLPHSEF 182

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 35.6 bits (80), Expect = 7e-04
 Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 10/94 (10%)

Query: 20  YHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS 79
           Y+ ++       L    P L  + +  + + ELP+        +  ++      L  +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP----PRLERLIA-SFNHLAEVPE 321

Query: 80  TLFRDCKKLVKLELQRNKLKYLPENLFESLKELY 113
                 + L +L ++ N L+  P+ + ES+++L 
Sbjct: 322 LP----QNLKQLHVEYNPLREFPD-IPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 35.6 bits (80), Expect = 0.001
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 9/69 (13%)

Query: 57  FWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLN 116
                ++  + +  + KL  LP+       +L +L    N L  +PE      + L  L+
Sbjct: 280 CDLPPSLEELNV-SNNKLIELPALP----PRLERLIASFNHLAEVPE----LPQNLKQLH 330

Query: 117 LKNNQLENI 125
           ++ N L   
Sbjct: 331 VEYNPLREF 339

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 0.002
 Identities = 8/44 (18%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 82  FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI 125
           + +  +  +L+L+  K+  + ENL  +L +   ++  +N++  +
Sbjct: 14  YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	127
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.85
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.81
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.79
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.78
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.76
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.76
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.73
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.71
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.7
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.66
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.66
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.62
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.6
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.58
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.57
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.55
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.51
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.5
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.5
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.47
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.46
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.43
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.36
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.34
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.33
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.29
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.26
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.11
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.1
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.72
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.69
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.57
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.55
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.5
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.49
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.36
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.2
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.02
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.8
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.03
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.59
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.01

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.85  E-value=3.6e-21  Score=114.94  Aligned_cols=119  Identities=22%  Similarity=0.367  Sum_probs=107.3

Q ss_pred             CCchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecch
Q psy8031           1 MFPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST   80 (127)
Q Consensus         1 ~i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~   80 (127)
                      +||++++   +.+++|++++|.+. ..++...|..+++|+.|++++|.+..++...|..++.|+.++++ +|.+..+++.
T Consensus        22 ~iP~~lp---~~l~~L~Ls~N~i~-~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls-~N~l~~l~~~   96 (192)
T d1w8aa_          22 EIPRDIP---LHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG-ENKIKEISNK   96 (192)
T ss_dssp             SCCSCCC---TTCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC-SCCCCEECSS
T ss_pred             ccCCCCC---CCCCEEEeCCCCCc-ccccccccCCCceEeeeeccccccccccccccccccccceeeec-cccccccCHH
Confidence            3676663   56899999999985 34778888999999999999999999998889999999999999 9999999999


Q ss_pred             hhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031          81 LFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        81 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      +|.++++|+.+++++|.++.++...|..+++|+++++++|.+..
T Consensus        97 ~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             HHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            99999999999999999999999989999999999999998764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.8e-19  Score=104.04  Aligned_cols=114  Identities=18%  Similarity=0.222  Sum_probs=100.8

Q ss_pred             hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCC
Q psy8031           7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCK   86 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~   86 (127)
                      |.++.++++|++++|++.  .++ ..+..++.|+.+++++|+++.++.  |..+++|+.++++ +|.+..+++..+..++
T Consensus        14 ~~n~~~lr~L~L~~n~I~--~i~-~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls-~N~i~~l~~~~~~~l~   87 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP--VIE-NLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVN-NNRICRIGEGLDQALP   87 (162)
T ss_dssp             EECTTSCEEEECTTSCCC--SCC-CGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECC-SSCCCEECSCHHHHCT
T ss_pred             ccCcCcCcEEECCCCCCC--ccC-ccccccccCCEEECCCCCCCccCC--cccCcchhhhhcc-cccccCCCcccccccc
Confidence            567788999999999987  886 456789999999999999999854  7889999999999 9999999988778899


Q ss_pred             CCcEEEecCccccccCh-hhhcCCccccEEeccCCcccccC
Q psy8031          87 KLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        87 ~l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      +++.+++++|.++.+++ ..+..+++|+.+++++|+++..|
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             ccccceeccccccccccccccccccccchhhcCCCcccccc
Confidence            99999999999998865 44678899999999999998765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.4e-18  Score=109.03  Aligned_cols=121  Identities=27%  Similarity=0.446  Sum_probs=60.7

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      +++..|+++++|+.|++++|.+.  .++...+.....++.+++++|+++.+++..|..++.++.++++ +|.+..+++.+
T Consensus        96 l~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~-~N~l~~l~~~~  172 (284)
T d1ozna_          96 VDPATFHGLGRLHTLHLDRCGLQ--ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH-GNRISSVPERA  172 (284)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCEECTTT
T ss_pred             ccchhhcccccCCEEecCCcccc--cccccccchhcccchhhhccccccccChhHhccccchhhcccc-cCcccccchhh
Confidence            34445555555555555555543  4444444444555555555555555544444444555555555 55555554444


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI  125 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~  125 (127)
                      |.++++++.+.+++|.++.+....|..++++..+++++|.+.++
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~  216 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL  216 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             hccccccchhhhhhccccccChhHhhhhhhcccccccccccccc
Confidence            44455555555555555444443344445555555555544443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.8e-18  Score=107.69  Aligned_cols=119  Identities=24%  Similarity=0.396  Sum_probs=111.0

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchh
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTL   81 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~   81 (127)
                      ++...+..+..|+.+++++|++.  .+++.+|..++.++.+++++|+++.+++.+|.+++.|+.+.+. .|.+..+.+..
T Consensus       120 ~~~~~~~~~~~L~~l~l~~N~l~--~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~-~N~l~~i~~~~  196 (284)
T d1ozna_         120 LGPGLFRGLAALQYLYLQDNALQ--ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH-QNRVAHVHPHA  196 (284)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTTT
T ss_pred             ccccccchhcccchhhhcccccc--ccChhHhccccchhhcccccCcccccchhhhccccccchhhhh-hccccccChhH
Confidence            56678888999999999999987  8999999999999999999999999999999999999999999 99999998888


Q ss_pred             hccCCCCcEEEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031          82 FRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        82 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~  123 (127)
                      |..+++++.+++++|.+..++...|+++++|+.+++++|++.
T Consensus       197 f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            999999999999999999999988999999999999999765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=5.1e-18  Score=94.57  Aligned_cols=105  Identities=19%  Similarity=0.234  Sum_probs=88.7

Q ss_pred             eEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEe
Q psy8031          14 QVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL   93 (127)
Q Consensus        14 ~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l   93 (127)
                      |.|++++|+++  .++.  +..++.++++++++|+++.+|+. +..+++|+.++++ +|.++.++.  +..+++++.+++
T Consensus         1 R~L~Ls~n~l~--~l~~--l~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~-~N~i~~l~~--~~~l~~L~~L~l   72 (124)
T d1dcea3           1 RVLHLAHKDLT--VLCH--LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQAS-DNALENVDG--VANLPRLQELLL   72 (124)
T ss_dssp             SEEECTTSCCS--SCCC--GGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECC-SSCCCCCGG--GTTCSSCCEEEC
T ss_pred             CEEEcCCCCCC--CCcc--cccCCCCCEEECCCCccCcchhh-hhhhhcccccccc-cccccccCc--cccccccCeEEC
Confidence            57899999986  7764  58899999999999999998865 7788999999999 999998864  577899999999


Q ss_pred             cCccccccCh-hhhcCCccccEEeccCCcccccC
Q psy8031          94 QRNKLKYLPE-NLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        94 ~~n~~~~~~~-~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      ++|.++.++. ..++.+++|+.+++++|+++.++
T Consensus        73 ~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          73 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCCccCCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            9999988865 44678889999999999987654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=2.6e-18  Score=102.39  Aligned_cols=110  Identities=21%  Similarity=0.350  Sum_probs=99.2

Q ss_pred             cceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccc-cChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031          12 YLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE-LPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK   90 (127)
Q Consensus        12 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~   90 (127)
                      ..+.++.+++++.  .+|+++   .+.+++|++++|+++. ++...|..+++|+.|+++ +|.+..++...|..+++|+.
T Consensus         9 ~~~~v~Cs~~~L~--~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~-~N~i~~~~~~~~~~~~~L~~   82 (192)
T d1w8aa_           9 EGTTVDCTGRGLK--EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELK-RNQLTGIEPNAFEGASHIQE   82 (192)
T ss_dssp             ETTEEECTTSCCS--SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECC-SSCCCCBCTTTTTTCTTCCE
T ss_pred             cCCEEEEeCCCcC--ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeecc-ccccccccccccccccccce
Confidence            4568899999876  999876   3689999999999985 667778999999999999 99999999988999999999


Q ss_pred             EEecCccccccChhhhcCCccccEEeccCCcccccCC
Q psy8031          91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR  127 (127)
Q Consensus        91 l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~  127 (127)
                      +++++|.++.+++.+|.++++|+.|++++|.|+.+++
T Consensus        83 L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~  119 (192)
T d1w8aa_          83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP  119 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred             eeeccccccccCHHHHhCCCcccccccCCccccccCH
Confidence            9999999999999889999999999999999998863

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.4e-17  Score=102.61  Aligned_cols=121  Identities=27%  Similarity=0.401  Sum_probs=78.5

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccCh-----------------------hhhc
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS-----------------------DLFW   58 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~-----------------------~~~~   58 (127)
                      +|+++|.++++|+.|++++|++.  .++.  +..++.|++|++++|+++.++.                       ..+.
T Consensus        46 l~~~~f~~l~~L~~L~L~~N~l~--~l~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  121 (266)
T d1p9ag_          46 FSLATLMPYTRLTQLNLDRAELT--KLQV--DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR  121 (266)
T ss_dssp             EEGGGGTTCTTCCEEECTTSCCC--EEEC--CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTT
T ss_pred             cCHHHhhcccccccccccccccc--cccc--ccccccccccccccccccccccccccccccccccccccccceeeccccc
Confidence            46677777888888888887765  5554  2456666666666665554333                       2233


Q ss_pred             CCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccCC
Q psy8031          59 NSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENITR  127 (127)
Q Consensus        59 ~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~  127 (127)
                      .+.+++.+.+. .|.+..+++..+..+..++.+++++|.++.++...|..+++|+.|++++|.++++|+
T Consensus       122 ~l~~l~~L~l~-~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~  189 (266)
T d1p9ag_         122 GLGELQELYLK-GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK  189 (266)
T ss_dssp             TCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             ccccccccccc-ccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccCh
Confidence            33444444444 555555666656666777777777777777777667777888888888888877763

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=8.1e-17  Score=100.17  Aligned_cols=114  Identities=25%  Similarity=0.357  Sum_probs=99.6

Q ss_pred             hhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccC
Q psy8031           6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC   85 (127)
Q Consensus         6 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~   85 (127)
                      .|..+++|+.|+++++.+.  .++...+..+..+..+++++|.++.+++..+..++.++.++++ +|.++.+++..|..+
T Consensus        95 ~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~-~N~l~~~~~~~~~~l  171 (266)
T d1p9ag_          95 LGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNNLTELPAGLLNGL  171 (266)
T ss_dssp             CTTTCTTCCEEECCSSCCC--CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-TSCCSCCCTTTTTTC
T ss_pred             ccccccccccccccccccc--eeeccccccccccccccccccccceeccccccccccchhcccc-cccccccCccccccc
Confidence            4566777777888777765  7777777888889999999999999998888889999999999 999999999888889


Q ss_pred             CCCcEEEecCccccccChhhhcCCccccEEeccCCccc
Q psy8031          86 KKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLE  123 (127)
Q Consensus        86 ~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~  123 (127)
                      ++|+.|++++|.++.+|+.+ ..+++|+.+++++|++.
T Consensus       172 ~~L~~L~Ls~N~L~~lp~~~-~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         172 ENLDTLLLQENSLYTIPKGF-FGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTCCEEECCSSCCCCCCTTT-TTTCCCSEEECCSCCBC
T ss_pred             cccceeecccCCCcccChhH-CCCCCCCEEEecCCCCC
Confidence            99999999999999999986 47899999999999764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.1e-16  Score=91.23  Aligned_cols=107  Identities=17%  Similarity=0.174  Sum_probs=78.8

Q ss_pred             ccceEEEecCCcCcccccCccccCCCCCCcEEEecCC-cccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031          11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES-SIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV   89 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~   89 (127)
                      ...+.++.+++++.  +.|..+ ..+++++.+++.++ .++.++...|.++++|+.|+++ +|.++.+++.+|.++++++
T Consensus         8 ~~~~~l~c~~~~~~--~~p~~l-~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls-~N~l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           8 HGSSGLRCTRDGAL--DSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV-KSGLRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             SSSSCEECCSSCCC--TTTTTS-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECC-SSCCCEECTTGGGSCSCCC
T ss_pred             CCCCeEEecCCCCc--cCcccc-cCccccCeeecCCCccccccCchhhccccccCcceee-ccccCCccccccccccccc
Confidence            34556777777654  566553 66777888888655 4777877778888888888888 8888888777777778888


Q ss_pred             EEEecCccccccChhhhcCCccccEEeccCCcc
Q psy8031          90 KLELQRNKLKYLPENLFESLKELYTLNLKNNQL  122 (127)
Q Consensus        90 ~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i  122 (127)
                      .+++++|.++.++..+|... .++.+++++|++
T Consensus        84 ~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~  115 (156)
T d2ifga3          84 RLNLSFNALESLSWKTVQGL-SLQELVLSGNPL  115 (156)
T ss_dssp             EEECCSSCCSCCCSTTTCSC-CCCEEECCSSCC
T ss_pred             ceeccCCCCcccChhhhccc-cccccccCCCcc
Confidence            88888888888877766444 577888888765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=1.3e-15  Score=96.09  Aligned_cols=115  Identities=23%  Similarity=0.370  Sum_probs=68.7

Q ss_pred             hhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhcc
Q psy8031           5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD   84 (127)
Q Consensus         5 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~   84 (127)
                      ..|..++.|+.+++++|.+.  .++...   +++++.+++++|..+...+..|..++.++.++++ .|.+..+++..|.+
T Consensus       144 ~~~~~l~~L~~l~l~~n~l~--~l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s-~n~l~~~~~~~~~~  217 (305)
T d1xkua_         144 GAFQGMKKLSYIRIADTNIT--TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS-FNSISAVDNGSLAN  217 (305)
T ss_dssp             TGGGGCTTCCEEECCSSCCC--SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECC-SSCCCEECTTTGGG
T ss_pred             cccccccccCccccccCCcc--ccCccc---CCccCEEECCCCcCCCCChhHhhccccccccccc-cccccccccccccc
Confidence            34556666666666666654  555433   4456666666666665555555556666666666 66666665555555


Q ss_pred             CCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          85 CKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        85 ~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      +++|+.+++++|.++.+|.. |..+++|+.|++++|+|++++
T Consensus       218 l~~L~~L~L~~N~L~~lp~~-l~~l~~L~~L~Ls~N~i~~i~  258 (305)
T d1xkua_         218 TPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIG  258 (305)
T ss_dssp             STTCCEEECCSSCCSSCCTT-TTTCSSCCEEECCSSCCCCCC
T ss_pred             cccceeeecccccccccccc-cccccCCCEEECCCCccCccC
Confidence            66666666666666666554 355666666666666665543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.9e-16  Score=90.57  Aligned_cols=108  Identities=20%  Similarity=0.277  Sum_probs=93.2

Q ss_pred             hhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecc-hhhc
Q psy8031           5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TLFR   83 (127)
Q Consensus         5 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~-~~~~   83 (127)
                      +.+..+++|+.|++++|++.  .++.  |..++.|+++++++|+++.+++..+..+++++.++++ +|.+..++. ..+.
T Consensus        35 ~~~~~l~~L~~L~Ls~N~i~--~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~-~N~i~~~~~l~~l~  109 (162)
T d1a9na_          35 NLGATLDQFDAIDFSDNEIR--KLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT-NNSLVELGDLDPLA  109 (162)
T ss_dssp             CGGGGTTCCSEEECCSSCCC--EECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC-SCCCCCGGGGGGGG
T ss_pred             ccccccccCCEEECCCCCCC--ccCC--cccCcchhhhhcccccccCCCccccccccccccceec-cccccccccccccc
Confidence            56678899999999999987  7753  6889999999999999999998777789999999999 999998865 4567


Q ss_pred             cCCCCcEEEecCccccccCh---hhhcCCccccEEec
Q psy8031          84 DCKKLVKLELQRNKLKYLPE---NLFESLKELYTLNL  117 (127)
Q Consensus        84 ~~~~l~~l~l~~n~~~~~~~---~~~~~~~~l~~l~l  117 (127)
                      .+++|+.+++++|.++..+.   .++..+++|+.||-
T Consensus       110 ~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_         110 SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             cccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            88999999999999988874   45677889988873

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.62  E-value=5.8e-15  Score=93.09  Aligned_cols=122  Identities=24%  Similarity=0.370  Sum_probs=78.5

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhh------------------------
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLF------------------------   57 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~------------------------   57 (127)
                      ||+..|.++++|+.|++++|.+.  .+++..|..++.++.+++++|+++.++...+                        
T Consensus        46 l~~~~f~~l~~L~~L~l~~n~~~--~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~  123 (305)
T d1xkua_          46 IKDGDFKNLKNLHTLILINNKIS--KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL  123 (305)
T ss_dssp             BCTTTTTTCTTCCEEECCSSCCC--CBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTC
T ss_pred             cChhHhhcccccccccccccccc--ccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhcc
Confidence            45566666677777777776655  6666666666666666666655544432211                        


Q ss_pred             -----------------------cC---------------------CCCCcEEEecCCCCCeeecchhhccCCCCcEEEe
Q psy8031          58 -----------------------WN---------------------STNITNIVLTGHKKLTSLPSTLFRDCKKLVKLEL   93 (127)
Q Consensus        58 -----------------------~~---------------------~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l   93 (127)
                                             ..                     .++++.+++. ++......+..|.+++.++.+++
T Consensus       124 ~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~-~n~~~~~~~~~~~~~~~l~~L~~  202 (305)
T d1xkua_         124 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD-GNKITKVDAASLKGLNNLAKLGL  202 (305)
T ss_dssp             TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECT-TSCCCEECTGGGTTCTTCCEEEC
T ss_pred             ccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECC-CCcCCCCChhHhhcccccccccc
Confidence                                   11                     2233333333 44444444455666777888888


Q ss_pred             cCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          94 QRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        94 ~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      ++|.+..++...|.++++|+.|++++|+++++|
T Consensus       203 s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp  235 (305)
T d1xkua_         203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVP  235 (305)
T ss_dssp             CSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC
T ss_pred             ccccccccccccccccccceeeecccccccccc
Confidence            888888887777788889999999999888876

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=5.7e-15  Score=82.04  Aligned_cols=103  Identities=20%  Similarity=0.339  Sum_probs=86.1

Q ss_pred             hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecc-hhhccC
Q psy8031           7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-TLFRDC   85 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~-~~~~~~   85 (127)
                      +..++.|++|++++|++.  .+|+. |..+++|+.+++++|+++.++.  +..+++++.++++ +|.+..++. ..+..+
T Consensus        16 l~~l~~L~~L~ls~N~l~--~lp~~-~~~l~~L~~L~l~~N~i~~l~~--~~~l~~L~~L~l~-~N~i~~~~~~~~l~~~   89 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLR--ALPPA-LAALRCLEVLQASDNALENVDG--VANLPRLQELLLC-NNRLQQSAAIQPLVSC   89 (124)
T ss_dssp             GGGGTTCCEEECCSSCCC--CCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC-SSCCCSSSTTGGGGGC
T ss_pred             cccCCCCCEEECCCCccC--cchhh-hhhhhcccccccccccccccCc--cccccccCeEECC-CCccCCCCCchhhcCC
Confidence            578899999999999987  88875 5889999999999999998864  7889999999999 999998865 456778


Q ss_pred             CCCcEEEecCcccccc---ChhhhcCCccccEE
Q psy8031          86 KKLVKLELQRNKLKYL---PENLFESLKELYTL  115 (127)
Q Consensus        86 ~~l~~l~l~~n~~~~~---~~~~~~~~~~l~~l  115 (127)
                      ++++.+++++|.++..   +..+...++++..+
T Consensus        90 ~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          90 PRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             TTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9999999999998754   34444556776654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=7.6e-15  Score=89.75  Aligned_cols=123  Identities=19%  Similarity=0.372  Sum_probs=72.5

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEec-CCcccccChhhhcCCCCCcEEEec-----------
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILG-ESSIAELPSDLFWNSTNITNIVLT-----------   69 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~-~n~~~~~~~~~~~~~~~l~~l~l~-----------   69 (127)
                      ||+++|.++++|++|++++|.+. ..+++..|..++.++.+.+. .+.+..+++..|.+++.|+.+++.           
T Consensus        44 l~~~~f~~l~~L~~L~ls~n~~~-~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~  122 (242)
T d1xwdc1          44 IQKGAFSGFGDLEKIEISQNDVL-EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH  122 (242)
T ss_dssp             ECTTTTTTCTTCCEEEEESCTTC-CEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCT
T ss_pred             cChhHhhccchhhhhhhcccccc-ceeeccccccccccccccccccccccccccccccccccccccccchhhhccccccc
Confidence            46667777777777777777653 23555555555555555543 234444444445555555555554           


Q ss_pred             --------------------------------------CCCCCeeecchhhccCCCCcEE-EecCccccccChhhhcCCc
Q psy8031          70 --------------------------------------GHKKLTSLPSTLFRDCKKLVKL-ELQRNKLKYLPENLFESLK  110 (127)
Q Consensus        70 --------------------------------------~~n~~~~~~~~~~~~~~~l~~l-~l~~n~~~~~~~~~~~~~~  110 (127)
                                                            ..+.++.++...|.. .++..+ .+.+|.+++++...|.+++
T Consensus       123 ~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~-~~l~~~~~l~~n~l~~l~~~~f~~l~  201 (242)
T d1xwdc1         123 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNG-TQLDELNLSDNNNLEELPNDVFHGAS  201 (242)
T ss_dssp             TTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTT-CCEEEEECTTCTTCCCCCTTTTTTSC
T ss_pred             ccccccccccccccccccccccccccccccccceeeecccccccccccccccc-hhhhccccccccccccccHHHhcCCC
Confidence                                                  022333333333221 222223 3455667777777778889


Q ss_pred             cccEEeccCCcccccC
Q psy8031         111 ELYTLNLKNNQLENIT  126 (127)
Q Consensus       111 ~l~~l~l~~n~i~~~~  126 (127)
                      +|+.|++++|+++++|
T Consensus       202 ~L~~L~Ls~N~l~~l~  217 (242)
T d1xwdc1         202 GPVILDISRTRIHSLP  217 (242)
T ss_dssp             CCSEEECTTSCCCCCC
T ss_pred             CCCEEECCCCcCCccC
Confidence            9999999999998876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.1e-14  Score=83.91  Aligned_cols=89  Identities=19%  Similarity=0.212  Sum_probs=80.5

Q ss_pred             hcCCccceEEEecCCc-CcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccC
Q psy8031           7 FAEMKYLQVIKISYHK-DSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDC   85 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~   85 (127)
                      +..++++++|++.++. +.  .++...|.+++.|+.|++++|+++.+++.+|..+++++.++++ .|.++.++...|...
T Consensus        27 l~~l~~l~~L~l~~n~~l~--~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls-~N~l~~l~~~~~~~~  103 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQ--HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS-FNALESLSWKTVQGL  103 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCC--EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC-SSCCSCCCSTTTCSC
T ss_pred             ccCccccCeeecCCCcccc--ccCchhhccccccCcceeeccccCCcccccccccccccceecc-CCCCcccChhhhccc
Confidence            4668899999998764 65  8999999999999999999999999999999999999999999 999999999988754


Q ss_pred             CCCcEEEecCcccc
Q psy8031          86 KKLVKLELQRNKLK   99 (127)
Q Consensus        86 ~~l~~l~l~~n~~~   99 (127)
                       +++.+++++|.+.
T Consensus       104 -~l~~L~L~~Np~~  116 (156)
T d2ifga3         104 -SLQELVLSGNPLH  116 (156)
T ss_dssp             -CCCEEECCSSCCC
T ss_pred             -cccccccCCCccc
Confidence             7999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=5.1e-14  Score=83.96  Aligned_cols=111  Identities=20%  Similarity=0.386  Sum_probs=68.0

Q ss_pred             hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccCh--------------------hhhcCCCCCcEE
Q psy8031           7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS--------------------DLFWNSTNITNI   66 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~--------------------~~~~~~~~l~~l   66 (127)
                      ++.+++|+.|++++|++.  .+++  +..+++|+.+++++|.+..++.                    ..+..+++++.+
T Consensus        58 l~~l~nL~~L~Ls~N~l~--~~~~--l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L  133 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLT--DITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL  133 (199)
T ss_dssp             GGGCTTCCEEECCSSCCC--CCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             cccCCCcCcCcccccccc--Cccc--ccCCcccccccccccccccccccccccccccccccccccccccccchhhhhHHh
Confidence            345566666666666654  4443  3555666666665555444332                    013445566666


Q ss_pred             EecCCCCCeeecchhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          67 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        67 ~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      +++ +|.+..++.  +..+++++.+++.+|.++.++.  ++++++|+.|++++|++++++
T Consensus       134 ~l~-~n~l~~~~~--l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         134 ELS-SNTISDISA--LSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             ECC-SSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred             hhh-hhhhccccc--ccccccccccccccccccCCcc--ccCCCCCCEEECCCCCCCCCc
Confidence            666 666555432  4556677777777777776654  467888888888888887764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.51  E-value=8.3e-17  Score=96.25  Aligned_cols=112  Identities=19%  Similarity=0.246  Sum_probs=93.4

Q ss_pred             hhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhcc
Q psy8031           5 DLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRD   84 (127)
Q Consensus         5 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~   84 (127)
                      ..+..+++|+.|++++|.+.  .++.  +..+++|+.|++++|.++.++.. +..++.|+.+++. +|.++.+++  +..
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~--~i~~--l~~l~~L~~L~Ls~N~i~~i~~~-~~~~~~L~~L~l~-~N~i~~l~~--~~~  113 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIE--KISS--LSGMENLRILSLGRNLIKKIENL-DAVADTLEELWIS-YNQIASLSG--IEK  113 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEES--CCCC--HHHHTTCCEEECCEEEECSCSSH-HHHHHHCCEEECS-EEECCCHHH--HHH
T ss_pred             hHHhcccccceeECcccCCC--Cccc--ccCCccccChhhccccccccccc-ccccccccccccc-ccccccccc--ccc
Confidence            45678999999999999976  7763  57899999999999999988753 3345689999999 999988754  566


Q ss_pred             CCCCcEEEecCccccccCh-hhhcCCccccEEeccCCcccc
Q psy8031          85 CKKLVKLELQRNKLKYLPE-NLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        85 ~~~l~~l~l~~n~~~~~~~-~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      +++|+.+++++|.++.++. ..+..+++|+.+++++|++..
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            7899999999999998865 456889999999999998754

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.50  E-value=1.9e-13  Score=81.39  Aligned_cols=106  Identities=14%  Similarity=0.325  Sum_probs=79.8

Q ss_pred             CCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCC
Q psy8031           9 EMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKL   88 (127)
Q Consensus         9 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l   88 (127)
                      .+.+++.|+++++.+.  .++.  ++.+++|+++++++|+++.+++  ++.+++|+.++++ .|.+..++.  +.+++.+
T Consensus        38 ~l~~l~~L~l~~~~i~--~l~~--l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~-~n~~~~~~~--l~~l~~L  108 (199)
T d2omxa2          38 DLDQVTTLQADRLGIK--SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN-NNQIADITP--LANLTNL  108 (199)
T ss_dssp             HHTTCCEEECTTSCCC--CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC-SSCCCCCGG--GTTCTTC
T ss_pred             HhcCCCEEECCCCCCC--Cccc--cccCCCcCcCccccccccCccc--ccCCccccccccc-ccccccccc--ccccccc
Confidence            4678999999999976  7653  4779999999999999998765  7889999999999 888877664  4566777


Q ss_pred             cEEEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031          89 VKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENI  125 (127)
Q Consensus        89 ~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~  125 (127)
                      +.++++++....++.  +..+++|+.+++++|.+..+
T Consensus       109 ~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~  143 (199)
T d2omxa2         109 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI  143 (199)
T ss_dssp             SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC
T ss_pred             ccccccccccccccc--cchhhhhHHhhhhhhhhccc
Confidence            777777666655432  34566666666666655544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.50  E-value=2.2e-13  Score=81.82  Aligned_cols=111  Identities=20%  Similarity=0.348  Sum_probs=78.7

Q ss_pred             hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecc-------
Q psy8031           7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-------   79 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~-------   79 (127)
                      +..+++|++|++++|++.  .+++  ++.+++|+++++++|+++.++.  +..+++|+.+++. ++.+..++.       
T Consensus        64 l~~l~~L~~L~L~~n~i~--~l~~--~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~-~~~~~~~~~l~~l~~l  136 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLT--DIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLE-HNGISDINGLVHLPQL  136 (210)
T ss_dssp             GGGCTTCCEEECCSSCCC--CCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECT-TSCCCCCGGGGGCTTC
T ss_pred             HhhCCCCCEEeCCCcccc--Cccc--cccCcccccccccccccccccc--ccccccccccccc-cccccccccccccccc
Confidence            466788888888888765  6654  3677888888888888877653  5667777777777 655443221       


Q ss_pred             -------------hhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          80 -------------TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        80 -------------~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                                   ..+..+++|+.+++++|.++.++.  ++++++|+.|++++|++++++
T Consensus       137 ~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~l~  194 (210)
T d1h6ta2         137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR  194 (210)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred             ccccccccccccccccccccccccccccccccccccc--ccCCCCCCEEECCCCCCCCCh
Confidence                         112345678888888888777754  477888899999888887764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.5e-13  Score=82.89  Aligned_cols=97  Identities=20%  Similarity=0.345  Sum_probs=73.6

Q ss_pred             CchhhhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccc-cChhhhcCCCCCcEEEecCCCCCeeecch
Q psy8031           2 FPKDLFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAE-LPSDLFWNSTNITNIVLTGHKKLTSLPST   80 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~~~~~l~~l~l~~~n~~~~~~~~   80 (127)
                      ||++++   +.++.|++++|.+.  .++...|.++++|+++++++|.+.. ++..+|..++.++.+.+...+.+..+++.
T Consensus        23 iP~~l~---~~l~~L~Ls~n~i~--~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~   97 (242)
T d1xwdc1          23 IPSDLP---RNAIELRFVLTKLR--VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE   97 (242)
T ss_dssp             CCSCSC---SCCSEEEEESCCCC--EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTT
T ss_pred             cCCCCC---CCCCEEECcCCcCC--ccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccc
Confidence            565554   35788888888876  8888888888888888888887764 56667778888888877624677777777


Q ss_pred             hhccCCCCcEEEecCccccccCh
Q psy8031          81 LFRDCKKLVKLELQRNKLKYLPE  103 (127)
Q Consensus        81 ~~~~~~~l~~l~l~~n~~~~~~~  103 (127)
                      .|.++++|+.++++++.+...+.
T Consensus        98 ~~~~l~~L~~l~l~~~~l~~~~~  120 (242)
T d1xwdc1          98 AFQNLPNLQYLLISNTGIKHLPD  120 (242)
T ss_dssp             SEECCTTCCEEEEESCCCCSCCC
T ss_pred             cccccccccccccchhhhccccc
Confidence            77888888888888887765543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=4.6e-13  Score=80.37  Aligned_cols=102  Identities=23%  Similarity=0.356  Sum_probs=78.0

Q ss_pred             CccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031          10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV   89 (127)
Q Consensus        10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~   89 (127)
                      +..++.|++++|.+.  .++.  +..+++|+++++++|+++.+++  +..+++|+.++++ +|.++.++.  +..+++|+
T Consensus        45 L~~L~~L~l~~~~i~--~l~~--l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~-~n~i~~l~~--l~~l~~L~  115 (210)
T d1h6ta2          45 LNSIDQIIANNSDIK--SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD-ENKVKDLSS--LKDLKKLK  115 (210)
T ss_dssp             HHTCCEEECTTSCCC--CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC-SSCCCCGGG--GTTCTTCC
T ss_pred             hcCccEEECcCCCCC--Cchh--HhhCCCCCEEeCCCccccCccc--cccCccccccccc-ccccccccc--cccccccc
Confidence            567899999999976  6653  4779999999999999998875  5678999999999 999998864  57788999


Q ss_pred             EEEecCccccccChhhhcCCccccEEeccCCcc
Q psy8031          90 KLELQRNKLKYLPENLFESLKELYTLNLKNNQL  122 (127)
Q Consensus        90 ~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i  122 (127)
                      .+++.++.+..++.  +..++.++.+++++|.+
T Consensus       116 ~L~l~~~~~~~~~~--l~~l~~l~~l~~~~n~l  146 (210)
T d1h6ta2         116 SLSLEHNGISDING--LVHLPQLESLYLGNNKI  146 (210)
T ss_dssp             EEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred             cccccccccccccc--ccccccccccccccccc
Confidence            99999887765543  23444444444444433

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.43  E-value=5.4e-13  Score=84.25  Aligned_cols=86  Identities=27%  Similarity=0.486  Sum_probs=37.5

Q ss_pred             CCCCCCcEEEecC-Cccc-ccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCcccc-ccChhhhcCCc
Q psy8031          34 ANLPLLNTVILGE-SSIA-ELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLK-YLPENLFESLK  110 (127)
Q Consensus        34 ~~~~~l~~l~l~~-n~~~-~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~~~~  110 (127)
                      ..++.|+++++++ |+++ .+|+. ++.+++|+.|+++ +|.+..+++..+..+..++.++++.|.+. .+|.. ++.++
T Consensus        73 ~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls-~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~-l~~l~  149 (313)
T d1ogqa_          73 ANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYIT-HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLP  149 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEE-EECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCT
T ss_pred             hcCccccccccccccccccccccc-cccccccchhhhc-cccccccccccccchhhhcccccccccccccCchh-hccCc
Confidence            4444455555443 3443 33332 3444445555554 44444444443444444444444444332 22222 24444


Q ss_pred             cccEEeccCCcc
Q psy8031         111 ELYTLNLKNNQL  122 (127)
Q Consensus       111 ~l~~l~l~~n~i  122 (127)
                      .++.+++++|.+
T Consensus       150 ~L~~l~l~~n~l  161 (313)
T d1ogqa_         150 NLVGITFDGNRI  161 (313)
T ss_dssp             TCCEEECCSSCC
T ss_pred             ccceeecccccc
Confidence            444444444443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.36  E-value=3e-12  Score=80.80  Aligned_cols=119  Identities=15%  Similarity=0.325  Sum_probs=97.0

Q ss_pred             CchhhhcCCccceEEEecC-CcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecch
Q psy8031           2 FPKDLFAEMKYLQVIKISY-HKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPST   80 (127)
Q Consensus         2 i~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~   80 (127)
                      ||+. +..++.|+.|++++ |.+. +.+|+. +..+++|++|++++|++..+++..+..+..|+.++++ .|.+....+.
T Consensus        68 lp~~-l~~L~~L~~L~Ls~~N~l~-g~iP~~-i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~-~N~~~~~~p~  143 (313)
T d1ogqa_          68 IPSS-LANLPYLNFLYIGGINNLV-GPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS-YNALSGTLPP  143 (313)
T ss_dssp             CCGG-GGGCTTCSEEEEEEETTEE-SCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC-SSEEESCCCG
T ss_pred             CChH-HhcCccccccccccccccc-cccccc-cccccccchhhhccccccccccccccchhhhcccccc-cccccccCch
Confidence            4554 47899999999997 6653 468876 4889999999999999998887778889999999999 8887765555


Q ss_pred             hhccCCCCcEEEecCcccc-ccChhhhcCCcc-ccEEeccCCccccc
Q psy8031          81 LFRDCKKLVKLELQRNKLK-YLPENLFESLKE-LYTLNLKNNQLENI  125 (127)
Q Consensus        81 ~~~~~~~l~~l~l~~n~~~-~~~~~~~~~~~~-l~~l~l~~n~i~~~  125 (127)
                      .+..++.++.+++++|.+. .+|... ..+.. +..++++.|+++..
T Consensus       144 ~l~~l~~L~~l~l~~n~l~~~ip~~~-~~l~~l~~~l~~~~n~l~~~  189 (313)
T d1ogqa_         144 SISSLPNLVGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGK  189 (313)
T ss_dssp             GGGGCTTCCEEECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEE
T ss_pred             hhccCcccceeecccccccccccccc-cccccccccccccccccccc
Confidence            5788999999999999887 677764 56655 48899999988753

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.34  E-value=5.1e-12  Score=81.30  Aligned_cols=111  Identities=21%  Similarity=0.348  Sum_probs=66.8

Q ss_pred             hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccCh--------------------hhhcCCCCCcEE
Q psy8031           7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS--------------------DLFWNSTNITNI   66 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~--------------------~~~~~~~~l~~l   66 (127)
                      +..+++++.+++++|.+.  .+++  +..++.|+.++++++.++.+++                    ..+..++.++.+
T Consensus       237 l~~l~~L~~L~l~~n~l~--~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L  312 (384)
T d2omza2         237 LASLTNLTDLDLANNQIS--NLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL  312 (384)
T ss_dssp             GGGCTTCSEEECCSSCCC--CCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEE
T ss_pred             hhcccccchhccccCccC--CCCc--ccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeE
Confidence            345555666666666543  3332  3445555555555554443221                    113445666777


Q ss_pred             EecCCCCCeeecchhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          67 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        67 ~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      +++ .+.++.+++  +..+++|+.+++++|.++.++.  ++++++|+.+++++|++++++
T Consensus       313 ~ls-~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l~~--l~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         313 TLY-FNNISDISP--VSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             ECC-SSCCSCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCBCG
T ss_pred             ECC-CCCCCCCcc--cccCCCCCEEECCCCCCCCChh--HcCCCCCCEEECCCCcCCCCh
Confidence            777 776666643  4567778888888887777653  467778888888887777654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.33  E-value=1.1e-11  Score=74.94  Aligned_cols=111  Identities=20%  Similarity=0.352  Sum_probs=73.2

Q ss_pred             hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccCh--------------------hhhcCCCCCcEE
Q psy8031           7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPS--------------------DLFWNSTNITNI   66 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~--------------------~~~~~~~~l~~l   66 (127)
                      |..++.++.+++++|.+.  .++.  +..++.++.++++++....+..                    ..+...++++.+
T Consensus        81 l~~l~~l~~l~~~~n~~~--~i~~--l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L  156 (227)
T d1h6ua2          81 LKNLTKITELELSGNPLK--NVSA--IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYL  156 (227)
T ss_dssp             GTTCCSCCEEECCSCCCS--CCGG--GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEE
T ss_pred             cccccccccccccccccc--cccc--ccccccccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccc
Confidence            455666666666666543  4432  3455555555555544332111                    113446678888


Q ss_pred             EecCCCCCeeecchhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          67 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        67 ~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      .++ ++.+....+  +..+++|+.+++++|.+++++.  ++.+++|+.|++++|++++++
T Consensus       157 ~l~-~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~i~  211 (227)
T d1h6ua2         157 SIG-NAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS  211 (227)
T ss_dssp             ECC-SSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG
T ss_pred             ccc-ccccccchh--hcccccceecccCCCccCCChh--hcCCCCCCEEECcCCcCCCCc
Confidence            888 777765544  5678889999999998888765  578889999999999888765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.29  E-value=1.1e-11  Score=79.65  Aligned_cols=106  Identities=16%  Similarity=0.279  Sum_probs=83.8

Q ss_pred             hcCCccceEEEecCCcCcccccCc--------------------cccCCCCCCcEEEecCCcccccChhhhcCCCCCcEE
Q psy8031           7 FAEMKYLQVIKISYHKDSLKELPS--------------------GLFANLPLLNTVILGESSIAELPSDLFWNSTNITNI   66 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~~~--------------------~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l   66 (127)
                      +..+++|+.++++++++.  .+++                    ..+..++.++.+++++|+++.+++  +..+++|+.+
T Consensus       259 ~~~~~~L~~L~l~~~~l~--~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L  334 (384)
T d2omza2         259 LSGLTKLTELKLGANQIS--NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL  334 (384)
T ss_dssp             GTTCTTCSEEECCSSCCC--CCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred             ccccccCCEeeccCcccC--CCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCcc--cccCCCCCEE
Confidence            455666777777666543  2221                    124567889999999999998764  6778999999


Q ss_pred             EecCCCCCeeecchhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCc
Q psy8031          67 VLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQ  121 (127)
Q Consensus        67 ~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~  121 (127)
                      +++ +|.++.++.  +..+++|+.+++++|.++.+++  ++++++|+.|++++|.
T Consensus       335 ~L~-~n~l~~l~~--l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         335 FFA-NNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             ECC-SSCCCCCGG--GGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             ECC-CCCCCCChh--HcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence            999 999988763  6789999999999999999876  5899999999999883

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.26  E-value=5.6e-11  Score=71.76  Aligned_cols=111  Identities=16%  Similarity=0.284  Sum_probs=79.9

Q ss_pred             hcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecc-------
Q psy8031           7 FAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPS-------   79 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~-------   79 (127)
                      +..+++|+.|++++|.+.  .+++  +..++.++++++.+|.++.++.  +..++.++.+.++ .+....+..       
T Consensus        59 l~~l~~L~~L~ls~n~i~--~~~~--l~~l~~l~~l~~~~n~~~~i~~--l~~l~~L~~l~l~-~~~~~~~~~~~~~~~~  131 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQIT--DLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLT-STQITDVTPLAGLSNL  131 (227)
T ss_dssp             GGGCTTCCEEECCSSCCC--CCGG--GTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECT-TSCCCCCGGGTTCTTC
T ss_pred             HhcCCCCcEeecCCceee--cccc--cccccccccccccccccccccc--ccccccccccccc-cccccccchhccccch
Confidence            567888888888888765  5554  5778888888888888877653  5677888888887 554432111       


Q ss_pred             -------------hhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          80 -------------TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        80 -------------~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                                   ..+..+++++.+.+++|.+...+.  ++++++|+.+++++|++++++
T Consensus       132 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~l~  189 (227)
T d1h6ua2         132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS  189 (227)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred             hhhhchhhhhchhhhhccccccccccccccccccchh--hcccccceecccCCCccCCCh
Confidence                         123445678888888887776544  478889999999999888764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.11  E-value=4.9e-13  Score=79.65  Aligned_cols=108  Identities=16%  Similarity=0.222  Sum_probs=84.2

Q ss_pred             ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031          11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK   90 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~   90 (127)
                      ..++.+++.+.-..+..++.. +..++++++|++++|+++.++.  +..+++|+.|+++ +|.+..++.. +..+.+|+.
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~s-l~~L~~L~~L~Ls~n~I~~i~~--l~~l~~L~~L~Ls-~N~i~~i~~~-~~~~~~L~~   97 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKISS--LSGMENLRILSLG-RNLIKKIENL-DAVADTLEE   97 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHH-HHHTTTCCEEECSEEEESCCCC--HHHHTTCCEEECC-EEEECSCSSH-HHHHHHCCE
T ss_pred             cccceeeeecccCchhhhhhH-HhcccccceeECcccCCCCccc--ccCCccccChhhc-cccccccccc-ccccccccc
Confidence            345566666653222345544 4789999999999999998864  6778999999999 9999888753 344568999


Q ss_pred             EEecCccccccChhhhcCCccccEEeccCCccccc
Q psy8031          91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENI  125 (127)
Q Consensus        91 l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~  125 (127)
                      +++++|.++.++.  +..+++|+.+++++|.++++
T Consensus        98 L~l~~N~i~~l~~--~~~l~~L~~L~L~~N~i~~~  130 (198)
T d1m9la_          98 LWISYNQIASLSG--IEKLVNLRVLYMSNNKITNW  130 (198)
T ss_dssp             EECSEEECCCHHH--HHHHHHSSEEEESEEECCCH
T ss_pred             ccccccccccccc--ccccccccccccccchhccc
Confidence            9999999998854  46889999999999988765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.10  E-value=4.2e-10  Score=71.25  Aligned_cols=99  Identities=22%  Similarity=0.368  Sum_probs=81.4

Q ss_pred             ccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcE
Q psy8031          11 KYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVK   90 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~   90 (127)
                      .+++.|+++++++.  .+|+    ..+.+++|++++|+++.+|..    ..+|+.|++. +|.+..++.-    .+.|+.
T Consensus        38 ~~l~~LdLs~~~L~--~lp~----~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~-~n~l~~l~~l----p~~L~~  102 (353)
T d1jl5a_          38 RQAHELELNNLGLS--SLPE----LPPHLESLVASCNSLTELPEL----PQSLKSLLVD-NNNLKALSDL----PPLLEY  102 (353)
T ss_dssp             HTCSEEECTTSCCS--CCCS----CCTTCSEEECCSSCCSSCCCC----CTTCCEEECC-SSCCSCCCSC----CTTCCE
T ss_pred             cCCCEEEeCCCCCC--CCCC----CCCCCCEEECCCCCCcccccc----hhhhhhhhhh-hcccchhhhh----cccccc
Confidence            35889999999876  8885    257899999999999998753    4689999999 9988877642    256899


Q ss_pred             EEecCccccccChhhhcCCccccEEeccCCcccccC
Q psy8031          91 LELQRNKLKYLPENLFESLKELYTLNLKNNQLENIT  126 (127)
Q Consensus        91 l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~  126 (127)
                      +++++|.+..+|.  ++.+++|+.++++++.+...+
T Consensus       103 L~L~~n~l~~lp~--~~~l~~L~~L~l~~~~~~~~~  136 (353)
T d1jl5a_         103 LGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLP  136 (353)
T ss_dssp             EECCSSCCSSCCC--CTTCTTCCEEECCSSCCSCCC
T ss_pred             ccccccccccccc--hhhhccceeeccccccccccc
Confidence            9999999999986  367899999999998877654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=4.7e-09  Score=68.33  Aligned_cols=111  Identities=21%  Similarity=0.214  Sum_probs=78.4

Q ss_pred             ccceEEEecCCcCcccccC-ccccCCCCCCcEEEecCCcccccC----hhhhcCCCCCcEEEecCCCCCeeecch----h
Q psy8031          11 KYLQVIKISYHKDSLKELP-SGLFANLPLLNTVILGESSIAELP----SDLFWNSTNITNIVLTGHKKLTSLPST----L   81 (127)
Q Consensus        11 ~~l~~l~l~~~~~~~~~~~-~~~~~~~~~l~~l~l~~n~~~~~~----~~~~~~~~~l~~l~l~~~n~~~~~~~~----~   81 (127)
                      ..|+.|++++++++  ... ..++..++.++++++++|.++...    ...+...++|+.|+++ +|.++..+-.    .
T Consensus         2 ~~l~~ld~~~~~i~--~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs-~N~i~~~~~~~l~~~   78 (460)
T d1z7xw1           2 LDIQSLDIQCEELS--DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR-SNELGDVGVHCVLQG   78 (460)
T ss_dssp             EEEEEEEEESCCCC--HHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECT-TCCCHHHHHHHHHHT
T ss_pred             CCCCEEEeeCCcCC--hHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECc-CCcCChHHHHHHHHH
Confidence            46889999999986  322 334466888999999999887432    2335678899999999 8887632211    1


Q ss_pred             hc-cCCCCcEEEecCccccccCh----hhhcCCccccEEeccCCcccc
Q psy8031          82 FR-DCKKLVKLELQRNKLKYLPE----NLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        82 ~~-~~~~l~~l~l~~n~~~~~~~----~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      +. ...+|+.+++++|.+++...    ..+..++.|+.+++++|.++.
T Consensus        79 l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          79 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             HhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            11 23479999999998875432    234567889999999998764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.69  E-value=1.2e-07  Score=59.67  Aligned_cols=103  Identities=20%  Similarity=0.323  Sum_probs=75.3

Q ss_pred             CccceEEEecCCcCcccccCccccCCCCCCcEEEecCCcccccChhhhcCCCCCcEEEecCCCCCeeecchhhccCCCCc
Q psy8031          10 MKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGESSIAELPSDLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLV   89 (127)
Q Consensus        10 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~   89 (127)
                      .++|+.|++++|++.  ++|..    ..+|+.|++++|+++.++.-    .+.|++|+++ +|.+..++.  +..++.++
T Consensus        57 ~~~L~~L~Ls~N~l~--~lp~~----~~~L~~L~l~~n~l~~l~~l----p~~L~~L~L~-~n~l~~lp~--~~~l~~L~  123 (353)
T d1jl5a_          57 PPHLESLVASCNSLT--ELPEL----PQSLKSLLVDNNNLKALSDL----PPLLEYLGVS-NNQLEKLPE--LQNSSFLK  123 (353)
T ss_dssp             CTTCSEEECCSSCCS--SCCCC----CTTCCEEECCSSCCSCCCSC----CTTCCEEECC-SSCCSSCCC--CTTCTTCC
T ss_pred             CCCCCEEECCCCCCc--ccccc----hhhhhhhhhhhcccchhhhh----cccccccccc-ccccccccc--hhhhccce
Confidence            467999999999987  88753    56899999999999887641    2569999999 999998875  35678999


Q ss_pred             EEEecCccccccChh------------------hhcCCccccEEeccCCccccc
Q psy8031          90 KLELQRNKLKYLPEN------------------LFESLKELYTLNLKNNQLENI  125 (127)
Q Consensus        90 ~l~l~~n~~~~~~~~------------------~~~~~~~l~~l~l~~n~i~~~  125 (127)
                      .++++++.+...+..                  .++.++.++.+.+..|....+
T Consensus       124 ~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         124 IIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             EEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC
T ss_pred             eeccccccccccccccccccchhhccccccccccccccccceeccccccccccc
Confidence            999988876544321                  112334566677766655543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.2e-09  Score=61.64  Aligned_cols=85  Identities=21%  Similarity=0.180  Sum_probs=63.6

Q ss_pred             cccCCCCCCcEEEecCCcccccCh--hhhcCCCCCcEEEecCCCCCeeecchhhccCCCCcEEEecCccccccCh-----
Q psy8031          31 GLFANLPLLNTVILGESSIAELPS--DLFWNSTNITNIVLTGHKKLTSLPSTLFRDCKKLVKLELQRNKLKYLPE-----  103 (127)
Q Consensus        31 ~~~~~~~~l~~l~l~~n~~~~~~~--~~~~~~~~l~~l~l~~~n~~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~-----  103 (127)
                      .++..++.|+++++++|+++.+..  ..+..+++|+.++++ +|.+..++.-.+.....++.+++.+|.+.....     
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls-~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLS-GNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCT-TSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccc-cCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            344568889999999999987753  345668899999999 999998877544455678899999998864321     


Q ss_pred             --hhhcCCccccEEe
Q psy8031         104 --NLFESLKELYTLN  116 (127)
Q Consensus       104 --~~~~~~~~l~~l~  116 (127)
                        .++..+++|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence              3455678888776

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=3.5e-09  Score=60.74  Aligned_cols=68  Identities=24%  Similarity=0.202  Sum_probs=55.6

Q ss_pred             hhcCCCCCcEEEecCCCCCeeecc--hhhccCCCCcEEEecCccccccChhhhcCCccccEEeccCCcccc
Q psy8031          56 LFWNSTNITNIVLTGHKKLTSLPS--TLFRDCKKLVKLELQRNKLKYLPENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        56 ~~~~~~~l~~l~l~~~n~~~~~~~--~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      .+..+++|+.++++ +|.++.+.+  ..+..+++|+.+++++|.++++++..+.....++.+++++|++..
T Consensus        60 ~~~~~~~L~~L~Ls-~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          60 IEENIPELLSLNLS-NNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHCTTCCCCCCC-SSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHHhCCCCCEeeCC-CccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            34567899999999 999998754  445678999999999999999887545556679999999998875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.50  E-value=6.4e-08  Score=61.38  Aligned_cols=117  Identities=20%  Similarity=0.222  Sum_probs=73.8

Q ss_pred             hcCCccceEEEecCCcCccc---ccCccccCCCCCCcEEEecCCcccccC----hhhhcCCCCCcEEEecCCCCCeeecc
Q psy8031           7 FAEMKYLQVIKISYHKDSLK---ELPSGLFANLPLLNTVILGESSIAELP----SDLFWNSTNITNIVLTGHKKLTSLPS   79 (127)
Q Consensus         7 ~~~~~~l~~l~l~~~~~~~~---~~~~~~~~~~~~l~~l~l~~n~~~~~~----~~~~~~~~~l~~l~l~~~n~~~~~~~   79 (127)
                      +..+..++.|++++|++...   ..-...+..++.++.|++++|.++...    ...+..++.|+.|+++ +|.+.....
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls-~n~i~~~g~  260 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN-DCLLSARGA  260 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT-TCCCCHHHH
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh-cCccCchhh
Confidence            44567788888888876411   111223456778888888888876421    1234567888888888 887764322


Q ss_pred             hh----hcc--CCCCcEEEecCccccc-----cChhhhcCCccccEEeccCCcccc
Q psy8031          80 TL----FRD--CKKLVKLELQRNKLKY-----LPENLFESLKELYTLNLKNNQLEN  124 (127)
Q Consensus        80 ~~----~~~--~~~l~~l~l~~n~~~~-----~~~~~~~~~~~l~~l~l~~n~i~~  124 (127)
                      ..    +..  ...++.+++++|.++.     +...+....+.|+.+++++|.+..
T Consensus       261 ~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            11    121  2468888888888763     222222245678888888888754

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.4e-07  Score=58.48  Aligned_cols=60  Identities=18%  Similarity=0.094  Sum_probs=28.7

Q ss_pred             CCCCcEEEecCCC-CCeeecchhhccCCCCcEEEecCc-cccccChhhhcCCccccEEeccCC
Q psy8031          60 STNITNIVLTGHK-KLTSLPSTLFRDCKKLVKLELQRN-KLKYLPENLFESLKELYTLNLKNN  120 (127)
Q Consensus        60 ~~~l~~l~l~~~n-~~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~~~~~~~~l~~l~l~~n  120 (127)
                      +++|+.++++ ++ .++.-....+..+++|+.++++++ .+++-....++.+++|+.++++++
T Consensus       174 ~~~L~~L~L~-~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         174 CPNLVHLDLS-DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCSEEECT-TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccc-cccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            4556666665 42 343222222344556666666653 444322222345556666666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=2.2e-07  Score=57.60  Aligned_cols=112  Identities=15%  Similarity=0.202  Sum_probs=53.8

Q ss_pred             hhcCCccceEEEecCCcCcccccCccccCCCCCCcEEEecCC-cccccC-hhhhcCCCCCcEEEecCCC-CCee--ecch
Q psy8031           6 LFAEMKYLQVIKISYHKDSLKELPSGLFANLPLLNTVILGES-SIAELP-SDLFWNSTNITNIVLTGHK-KLTS--LPST   80 (127)
Q Consensus         6 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~-~~~~~~~~~l~~l~l~~~n-~~~~--~~~~   80 (127)
                      ++..+++|+.|.++++.+.  ......+..+++|+.++++++ .++... ......+++|+.++++ +. .+..  +...
T Consensus        66 l~~~c~~L~~L~L~~~~l~--~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls-~c~~~~~~~~~~~  142 (284)
T d2astb2          66 ILSQCSKLQNLSLEGLRLS--DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS-WCFDFTEKHVQVA  142 (284)
T ss_dssp             HHTTBCCCSEEECTTCBCC--HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC-CCTTCCHHHHHHH
T ss_pred             HHHhCCCcccccccccCCC--cHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccc-cccccccccchhh
Confidence            3455666666666666543  222233455666666666653 344221 1112345666666666 42 3321  1111


Q ss_pred             hhccCCCCcEEEecCc--cccccC-hhhhcCCccccEEeccCC
Q psy8031          81 LFRDCKKLVKLELQRN--KLKYLP-ENLFESLKELYTLNLKNN  120 (127)
Q Consensus        81 ~~~~~~~l~~l~l~~n--~~~~~~-~~~~~~~~~l~~l~l~~n  120 (127)
                      ....++.++.+++++.  .+++.. ..+...+++|++|+++++
T Consensus       143 ~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~  185 (284)
T d2astb2         143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS  185 (284)
T ss_dssp             HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred             hcccccccchhhhcccccccccccccccccccccccccccccc
Confidence            1122355666666643  232111 122345677888888764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.2e-07  Score=59.46  Aligned_cols=15  Identities=33%  Similarity=0.384  Sum_probs=7.5

Q ss_pred             CCCCcEEEecCcccc
Q psy8031          85 CKKLVKLELQRNKLK   99 (127)
Q Consensus        85 ~~~l~~l~l~~n~~~   99 (127)
                      +++|+.+++++|.++
T Consensus       396 ~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         396 NHSLRELDLSNNCLG  410 (460)
T ss_dssp             CCCCCEEECCSSSCC
T ss_pred             CCCCCEEECCCCcCC
Confidence            344555555555444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.02  E-value=5.8e-06  Score=52.16  Aligned_cols=89  Identities=22%  Similarity=0.200  Sum_probs=54.0

Q ss_pred             CCCCCCcEEEecCCccccc-----ChhhhcCCCCCcEEEecCCCCCeeecc----hhhccCCCCcEEEecCccccccChh
Q psy8031          34 ANLPLLNTVILGESSIAEL-----PSDLFWNSTNITNIVLTGHKKLTSLPS----TLFRDCKKLVKLELQRNKLKYLPEN  104 (127)
Q Consensus        34 ~~~~~l~~l~l~~n~~~~~-----~~~~~~~~~~l~~l~l~~~n~~~~~~~----~~~~~~~~l~~l~l~~n~~~~~~~~  104 (127)
                      .....++.++++.|+++..     -...+...++++.++++ .|.+.....    ..+..+++|+.+++++|.+++....
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls-~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQ-DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECC-SSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccc-cccccccccccccccccccccchhhhhhcCccCchhhH
Confidence            3456778888888776632     11224456778888888 777653211    2234567788888888877643221


Q ss_pred             h----hcC--CccccEEeccCCccc
Q psy8031         105 L----FES--LKELYTLNLKNNQLE  123 (127)
Q Consensus       105 ~----~~~--~~~l~~l~l~~n~i~  123 (127)
                      .    +..  ...++.|++++|.|+
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCC
Confidence            1    222  246788888888765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.80  E-value=5.8e-05  Score=42.88  Aligned_cols=115  Identities=14%  Similarity=0.120  Sum_probs=75.7

Q ss_pred             hhcCCccceEEEecCCc-CcccccC--ccccCCCCCCcEEEecCCcccccC----hhhhcCCCCCcEEEecCCCCCeeec
Q psy8031           6 LFAEMKYLQVIKISYHK-DSLKELP--SGLFANLPLLNTVILGESSIAELP----SDLFWNSTNITNIVLTGHKKLTSLP   78 (127)
Q Consensus         6 ~~~~~~~l~~l~l~~~~-~~~~~~~--~~~~~~~~~l~~l~l~~n~~~~~~----~~~~~~~~~l~~l~l~~~n~~~~~~   78 (127)
                      +..+.+.|++|+++++. +....+.  ...+...+.++.|++++|.++.-.    ...+...+.++.++++ +|.+..-.
T Consensus        10 l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~-~n~i~~~g   88 (167)
T d1pgva_          10 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVE-SNFLTPEL   88 (167)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC-SSBCCHHH
T ss_pred             HHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeee-hhhcchHH
Confidence            34567899999999753 4311111  123466788999999999888421    1234456889999999 98887432


Q ss_pred             ch----hhccCCCCcEEEecCccccccChh-------hhcCCccccEEeccCCc
Q psy8031          79 ST----LFRDCKKLVKLELQRNKLKYLPEN-------LFESLKELYTLNLKNNQ  121 (127)
Q Consensus        79 ~~----~~~~~~~l~~l~l~~n~~~~~~~~-------~~~~~~~l~~l~l~~n~  121 (127)
                      -.    .+...++++.+++++|.+..+...       ++...+.|..++++.+.
T Consensus        89 ~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          89 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            21    223456799999998876654322       22345678889887764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.03  E-value=0.0011  Score=37.36  Aligned_cols=91  Identities=13%  Similarity=0.110  Sum_probs=62.4

Q ss_pred             CCCCCCcEEEecCC-cccccC----hhhhcCCCCCcEEEecCCCCCeeecc----hhhccCCCCcEEEecCccccccCh-
Q psy8031          34 ANLPLLNTVILGES-SIAELP----SDLFWNSTNITNIVLTGHKKLTSLPS----TLFRDCKKLVKLELQRNKLKYLPE-  103 (127)
Q Consensus        34 ~~~~~l~~l~l~~n-~~~~~~----~~~~~~~~~l~~l~l~~~n~~~~~~~----~~~~~~~~l~~l~l~~n~~~~~~~-  103 (127)
                      ...+.++.++++++ .++.-.    ...+...+.++.|+++ ++.+..-..    ..+...+.++.+++++|.+++-.. 
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls-~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLA-NTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECT-TSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecc-ccccchhHHHHHhhhhhhcccccceeeehhhcchHHHH
Confidence            45688999999874 465321    2235667889999999 988863221    223446789999999998874322 


Q ss_pred             ---hhhcCCccccEEeccCCccccc
Q psy8031         104 ---NLFESLKELYTLNLKNNQLENI  125 (127)
Q Consensus       104 ---~~~~~~~~l~~l~l~~n~i~~~  125 (127)
                         ..+...+.|++|++++|.+..+
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~~~  115 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQSVL  115 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred             HHHHHHHhCCcCCEEECCCCcCCCc
Confidence               1234557899999998866543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.59  E-value=0.0043  Score=34.67  Aligned_cols=115  Identities=8%  Similarity=0.123  Sum_probs=73.4

Q ss_pred             hhcCCccceEEEecCC-cCccccc--CccccCCCCCCcEEEecCCcccccC----hhhhcCCCCCcEEEecCCCCCeeec
Q psy8031           6 LFAEMKYLQVIKISYH-KDSLKEL--PSGLFANLPLLNTVILGESSIAELP----SDLFWNSTNITNIVLTGHKKLTSLP   78 (127)
Q Consensus         6 ~~~~~~~l~~l~l~~~-~~~~~~~--~~~~~~~~~~l~~l~l~~n~~~~~~----~~~~~~~~~l~~l~l~~~n~~~~~~   78 (127)
                      +..+.+.|++|.++++ .++...+  -..++...+.++.|++++|.++.-.    ...+.....++.+++. .+.+..-.
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~-~~~~~~~g   90 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE-SNFISGSG   90 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC-SSCCCHHH
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhc-cccccchh
Confidence            4466789999999984 4431111  1123357889999999999887432    1234557889999999 88775221


Q ss_pred             c----hhhccCCCCcEEEec--Cccccc-----cChhhhcCCccccEEeccCCcc
Q psy8031          79 S----TLFRDCKKLVKLELQ--RNKLKY-----LPENLFESLKELYTLNLKNNQL  122 (127)
Q Consensus        79 ~----~~~~~~~~l~~l~l~--~n~~~~-----~~~~~~~~~~~l~~l~l~~n~i  122 (127)
                      -    ..+...++++.+++.  .|.+.+     +. ..+...+.|+.++++.+..
T Consensus        91 ~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La-~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          91 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA-NMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH-HHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHH-HHHHhCCCcCEEeCcCCCC
Confidence            1    223446778876664  556653     22 2234668899999987643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.01  E-value=0.012  Score=32.80  Aligned_cols=90  Identities=16%  Similarity=0.169  Sum_probs=58.5

Q ss_pred             cCCCCCCcEEEecC-CcccccC----hhhhcCCCCCcEEEecCCCCCeeecc----hhhccCCCCcEEEecCccccccCh
Q psy8031          33 FANLPLLNTVILGE-SSIAELP----SDLFWNSTNITNIVLTGHKKLTSLPS----TLFRDCKKLVKLELQRNKLKYLPE  103 (127)
Q Consensus        33 ~~~~~~l~~l~l~~-n~~~~~~----~~~~~~~~~l~~l~l~~~n~~~~~~~----~~~~~~~~l~~l~l~~n~~~~~~~  103 (127)
                      ....+.++.+.+++ +.++.-.    ...+...++++.|+++ ++.+..-..    ..+.....++.++++++.+..-..
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls-~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV-GTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECT-TSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeecc-CCcccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence            35678999999987 4565321    2235577899999999 988763221    223456789999999988763211


Q ss_pred             ----hhhcCCccccEEec--cCCccc
Q psy8031         104 ----NLFESLKELYTLNL--KNNQLE  123 (127)
Q Consensus       104 ----~~~~~~~~l~~l~l--~~n~i~  123 (127)
                          ..+...+.++.+++  ++|.+.
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHHhCccccEEeeccCCCcCc
Confidence                12345577877555  456654