Psyllid ID: psy8038

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVYGASQN
ccccccccccHHHHHHHHHHHHHHccccccEEEEEccccccccccccEEEEcccccHHHHHHHHHHHcccccccEEEEEEccccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHccccccccEEEEEEccccccccccc
cccHHHHHccHHHHHHHHHHHHHHcccEEEEEEEEccccccccccccEEEEEcccEHHHHHHHHHHHcccccccccEEEEccEccccccEHHHHHHEEEEEccccccccccccEEEEEcccEHHHHHHHHHHHccccccccEEEEEEcccccccccc
mkfqykeehpfekrKAEGEKirrkypdrvpvivekapkarigdldkkkylvpsdltvGQFYFLIRKrvqlrpedaLFFFVnnvipptsatmGSLYQVIVEKapkarigdldkkkylvpsdltvGQFYFLIRKREHHEEDFFLYIAYsdenvygasqn
mkfqykeehpfekrkaegekirrkypdrvpvivekapkarigdldkkkylvpsdlTVGQFYFLIRKRVQLRPEDALFFFVNnvipptsatMGSLYQVIVEKApkarigdldkkkylvpsdlTVGQFYFLIRKREHHEEDFFLYIAYSDENVYGASQN
MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVYGASQN
****************************VPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVY*****
**FQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEK********LDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVE**************YLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG****
*****************GEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVYGASQN
*****KEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDEN*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVYGASQN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query157 2.2.26 [Sep-21-2011]
P60517117 Gamma-aminobutyric acid r yes N/A 0.738 0.991 0.699 1e-52
Q8MK68117 Gamma-aminobutyric acid r yes N/A 0.738 0.991 0.699 1e-52
Q9DCD6117 Gamma-aminobutyric acid r yes N/A 0.738 0.991 0.699 1e-52
O95166117 Gamma-aminobutyric acid r yes N/A 0.738 0.991 0.699 1e-52
Q9GJW7117 Gamma-aminobutyric acid r yes N/A 0.738 0.991 0.699 1e-52
Q5BIZ2117 Gamma-aminobutyric acid r no N/A 0.738 0.991 0.647 6e-49
Q6GQ27117 Gamma-aminobutyric acid r N/A N/A 0.738 0.991 0.647 6e-49
Q0VGK0117 Gamma-aminobutyric acid r no N/A 0.738 0.991 0.647 6e-49
Q8R3R8117 Gamma-aminobutyric acid r no N/A 0.738 0.991 0.647 6e-49
Q9H0R8117 Gamma-aminobutyric acid r no N/A 0.738 0.991 0.647 6e-49
>sp|P60517|GBRAP_RAT Gamma-aminobutyric acid receptor-associated protein OS=Rattus norvegicus GN=Gabarap PE=1 SV=1 Back     alignment and function desciption
 Score =  205 bits (521), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/153 (69%), Positives = 112/153 (73%), Gaps = 37/153 (24%)

Query: 1   MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
           MKF YKEEHPFEKR++EGEKIR+KYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF
Sbjct: 1   MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60

Query: 61  YFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSD 120
           YFLIRKR+ LR EDALFFFVNNVIPPTSATMG LYQ                        
Sbjct: 61  YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQ------------------------ 96

Query: 121 LTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
                        EHHEEDFFLYIAYSDE+VYG
Sbjct: 97  -------------EHHEEDFFLYIAYSDESVYG 116
Involved in apoptosis (By similarity). May play a role in intracellular transport of GABA(A) receptors and its interaction with the cytoskeleton.
Rattus norvegicus (taxid: 10116)
>sp|Q8MK68|GBRAP_RABIT Gamma-aminobutyric acid receptor-associated protein OS=Oryctolagus cuniculus GN=GABARAP PE=3 SV=1 Back     alignment and function description
>sp|Q9DCD6|GBRAP_MOUSE Gamma-aminobutyric acid receptor-associated protein OS=Mus musculus GN=Gabarap PE=1 SV=2 Back     alignment and function description
>sp|O95166|GBRAP_HUMAN Gamma-aminobutyric acid receptor-associated protein OS=Homo sapiens GN=GABARAP PE=1 SV=1 Back     alignment and function description
>sp|Q9GJW7|GBRAP_BOVIN Gamma-aminobutyric acid receptor-associated protein OS=Bos taurus GN=GABARAP PE=3 SV=2 Back     alignment and function description
>sp|Q5BIZ2|GBRL1_XENTR Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus tropicalis GN=gabarapl1 PE=3 SV=1 Back     alignment and function description
>sp|Q6GQ27|GBRL1_XENLA Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus laevis GN=gabarapl1 PE=3 SV=1 Back     alignment and function description
>sp|Q0VGK0|GBRL1_RAT Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Rattus norvegicus GN=Gabarapl1 PE=1 SV=1 Back     alignment and function description
>sp|Q8R3R8|GBRL1_MOUSE Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Mus musculus GN=Gabarapl1 PE=2 SV=2 Back     alignment and function description
>sp|Q9H0R8|GBRL1_HUMAN Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Homo sapiens GN=GABARAPL1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query157
90820032119 putative GABA-A receptor associated prot 0.745 0.983 0.740 1e-54
91085241120 PREDICTED: similar to putative GABA-A re 0.757 0.991 0.717 1e-54
170033122118 conserved hypothetical protein [Culex qu 0.745 0.991 0.727 4e-54
242007202117 gamma-aminobutyric acid receptor-associa 0.745 1.0 0.733 5e-54
270009356119 hypothetical protein TcasGA2_TC030688 [T 0.751 0.991 0.711 6e-54
195439306119 GK16501 [Drosophila willistoni] gi|19416 0.757 1.0 0.711 1e-53
410906959183 PREDICTED: gamma-aminobutyric acid recep 0.757 0.650 0.705 1e-53
312384844120 hypothetical protein AND_23785 [Anophele 0.764 1.0 0.707 2e-53
194890002121 GG18902 [Drosophila erecta] gi|190648859 0.757 0.983 0.705 3e-53
24641085121 Autophagy-specific gene 8a [Drosophila m 0.757 0.983 0.705 3e-53
>gi|90820032|gb|ABD98773.1| putative GABA-A receptor associated protein [Graphocephala atropunctata] Back     alignment and taxonomy information
 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 114/154 (74%), Positives = 116/154 (75%), Gaps = 37/154 (24%)

Query: 1   MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
           MKFQYKEEHPFEKRKAEGEKIR+KYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF
Sbjct: 1   MKFQYKEEHPFEKRKAEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60

Query: 61  YFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSD 120
           YFLIRKRV LRPEDALFFFVNNVIPPTSATMGSLYQ                        
Sbjct: 61  YFLIRKRVHLRPEDALFFFVNNVIPPTSATMGSLYQ------------------------ 96

Query: 121 LTVGQFYFLIRKREHHEEDFFLYIAYSDENVYGA 154
                        EHHEEDFFLYIAYSDENVYG+
Sbjct: 97  -------------EHHEEDFFLYIAYSDENVYGS 117

Source: Graphocephala atropunctata

Species: Graphocephala atropunctata

Genus: Graphocephala

Family: Cicadellidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91085241|ref|XP_973073.1| PREDICTED: similar to putative GABA-A receptor associated protein [Tribolium castaneum] Back     alignment and taxonomy information
>gi|170033122|ref|XP_001844428.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167873542|gb|EDS36925.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|242007202|ref|XP_002424431.1| gamma-aminobutyric acid receptor-associated protein, putative [Pediculus humanus corporis] gi|212507831|gb|EEB11693.1| gamma-aminobutyric acid receptor-associated protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|270009356|gb|EFA05804.1| hypothetical protein TcasGA2_TC030688 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|195439306|ref|XP_002067572.1| GK16501 [Drosophila willistoni] gi|194163657|gb|EDW78558.1| GK16501 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|410906959|ref|XP_003966959.1| PREDICTED: gamma-aminobutyric acid receptor-associated protein-like [Takifugu rubripes] Back     alignment and taxonomy information
>gi|312384844|gb|EFR29476.1| hypothetical protein AND_23785 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|194890002|ref|XP_001977210.1| GG18902 [Drosophila erecta] gi|190648859|gb|EDV46137.1| GG18902 [Drosophila erecta] Back     alignment and taxonomy information
>gi|24641085|ref|NP_727447.1| Autophagy-specific gene 8a [Drosophila melanogaster] gi|7291184|gb|AAF46617.1| Autophagy-specific gene 8a [Drosophila melanogaster] gi|21483378|gb|AAM52664.1| LD05816p [Drosophila melanogaster] gi|220942662|gb|ACL83874.1| Atg8a-PA [synthetic construct] gi|220960302|gb|ACL92687.1| Atg8a-PA [synthetic construct] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query157
FB|FBgn0052672121 Atg8a "Autophagy-specific gene 0.611 0.793 0.947 1.3e-45
UNIPROTKB|Q9GJW7117 GABARAP "Gamma-aminobutyric ac 0.611 0.820 0.916 3.9e-44
UNIPROTKB|F1Q2L2117 GABARAP "Uncharacterized prote 0.611 0.820 0.916 3.9e-44
UNIPROTKB|O95166117 GABARAP "Gamma-aminobutyric ac 0.611 0.820 0.916 3.9e-44
UNIPROTKB|Q8MK68117 GABARAP "Gamma-aminobutyric ac 0.611 0.820 0.916 3.9e-44
MGI|MGI:1861742117 Gabarap "gamma-aminobutyric ac 0.611 0.820 0.916 3.9e-44
RGD|61911117 Gabarap "GABA(A) receptor-asso 0.611 0.820 0.916 3.9e-44
ZFIN|ZDB-GENE-030131-5174163 gabarapa "GABA(A) receptor-ass 0.611 0.588 0.916 3.9e-44
UNIPROTKB|Q8HYB6117 GABARAPL1 "Gamma-aminobutyric 0.611 0.820 0.875 9.3e-43
UNIPROTKB|F1P7N8117 GABARAPL1 "Uncharacterized pro 0.611 0.820 0.875 9.3e-43
FB|FBgn0052672 Atg8a "Autophagy-specific gene 8a" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 91/96 (94%), Positives = 94/96 (97%)

Query:     1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
             MKFQYKEEH FEKR+AEG+KIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF
Sbjct:     1 MKFQYKEEHAFEKRRAEGDKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60

Query:    61 YFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQ 96
             YFLIRKR+ LRPEDALFFFVNNVIPPTSATMGSLYQ
Sbjct:    61 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQ 96
GO:0016236 "macroautophagy" evidence=IEP
GO:0005776 "autophagic vacuole" evidence=IDA
GO:0031396 "regulation of protein ubiquitination" evidence=IMP
GO:0008340 "determination of adult lifespan" evidence=IMP
GO:0010506 "regulation of autophagy" evidence=IMP
GO:0044753 "amphisome" evidence=IDA
UNIPROTKB|Q9GJW7 GABARAP "Gamma-aminobutyric acid receptor-associated protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q2L2 GABARAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O95166 GABARAP "Gamma-aminobutyric acid receptor-associated protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q8MK68 GABARAP "Gamma-aminobutyric acid receptor-associated protein" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
MGI|MGI:1861742 Gabarap "gamma-aminobutyric acid receptor associated protein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|61911 Gabarap "GABA(A) receptor-associated protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5174 gabarapa "GABA(A) receptor-associated protein a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HYB6 GABARAPL1 "Gamma-aminobutyric acid receptor-associated protein-like 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1P7N8 GABARAPL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6FXR8ATG8_CANGANo assigned EC number0.43790.73880.9830yesN/A
Q6BT31ATG8_DEBHANo assigned EC number0.41020.75790.875yesN/A
Q9GJW7GBRAP_BOVINNo assigned EC number0.69930.73880.9914yesN/A
Q8J282ATG8_PODASNo assigned EC number0.47400.74520.9669yesN/A
O94272ATG8_SCHPONo assigned EC number0.44150.74520.9669yesN/A
O95166GBRAP_HUMANNo assigned EC number0.69930.73880.9914yesN/A
P0CO54ATG8_CRYNJNo assigned EC number0.45090.73880.9206yesN/A
Q6C794ATG8_YARLINo assigned EC number0.46400.73880.9354yesN/A
Q8MK68GBRAP_RABITNo assigned EC number0.69930.73880.9914yesN/A
Q4WJ27ATG8_ASPFUNo assigned EC number0.47710.73880.9830yesN/A
Q5B2U9ATG8_EMENINo assigned EC number0.47710.73880.9830yesN/A
Q09490LGG1_CAEELNo assigned EC number0.62980.74520.9512yesN/A
Q6Z1D5ATG8C_ORYSJNo assigned EC number0.440.71970.9416yesN/A
A2QPN1ATG8_ASPNCNo assigned EC number0.47710.73880.9830yesN/A
Q9DCD6GBRAP_MOUSENo assigned EC number0.69930.73880.9914yesN/A
Q9SL04ATG8D_ARATHNo assigned EC number0.44660.71970.9416yesN/A
P60518GBRL1_CAVPONo assigned EC number0.64700.73880.9914yesN/A
P60517GBRAP_RATNo assigned EC number0.69930.73880.9914yesN/A
Q2UBH5ATG8_ASPORNo assigned EC number0.47710.73880.9830yesN/A
P38182ATG8_YEASTNo assigned EC number0.43790.73880.9914yesN/A
A7KAL9ATG8_PENCWNo assigned EC number0.47710.73880.9830yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query157
cd01611112 cd01611, GABARAP, Ubiquitin domain of GABA-recepto 3e-62
pfam02991104 pfam02991, Atg8, Autophagy protein Atg8 ubiquitin 3e-52
PTZ00380121 PTZ00380, PTZ00380, microtubule-associated protein 4e-05
cd0161287 cd01612, APG12_C, Ubiquitin-like domain of APG12 0.004
>gnl|CDD|176355 cd01611, GABARAP, Ubiquitin domain of GABA-receptor-associated protein Back     alignment and domain information 
 Score =  186 bits (475), Expect = 3e-62
 Identities = 80/149 (53%), Positives = 94/149 (63%), Gaps = 37/149 (24%)

Query: 5   YKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLI 64
           +KE HPFEKRKAE E+IR KYPDR+PVIVE+ PK+ + DLDKKKYLVPSDLTVGQF ++I
Sbjct: 1   FKERHPFEKRKAEVERIRAKYPDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYII 60

Query: 65  RKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLTVG 124
           RKR+QLRPE ALF FVNN +PPTSATM  LY+                            
Sbjct: 61  RKRIQLRPEKALFLFVNNSLPPTSATMSQLYE---------------------------- 92

Query: 125 QFYFLIRKREHHEEDFFLYIAYSDENVYG 153
                    EH +ED FLY+ YS E  +G
Sbjct: 93  ---------EHKDEDGFLYMTYSSEETFG 112

GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation. Length = 112
>gnl|CDD|111837 pfam02991, Atg8, Autophagy protein Atg8 ubiquitin like Back     alignment and domain information
>gnl|CDD|173572 PTZ00380, PTZ00380, microtubule-associated protein (MAP); Provisional Back     alignment and domain information
>gnl|CDD|176356 cd01612, APG12_C, Ubiquitin-like domain of APG12 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 157
KOG1654|consensus116 100.0
cd01611112 GABARAP Ubiquitin domain of GABA-receptor-associat 100.0
PTZ00380121 microtubule-associated protein (MAP); Provisional 100.0
PF02991104 Atg8: Autophagy protein Atg8 ubiquitin like; Inter 100.0
cd0161287 APG12_C Ubiquitin-like domain of APG12. APG12_C Th 99.92
KOG1654|consensus116 99.67
PF02991104 Atg8: Autophagy protein Atg8 ubiquitin like; Inter 99.61
cd01611112 GABARAP Ubiquitin domain of GABA-receptor-associat 99.47
KOG3439|consensus116 99.34
PF0411087 APG12: Ubiquitin-like autophagy protein Apg12 ; In 99.3
PTZ00380121 microtubule-associated protein (MAP); Provisional 99.24
cd0161287 APG12_C Ubiquitin-like domain of APG12. APG12_C Th 98.95
KOG3439|consensus116 96.0
PF0411087 APG12: Ubiquitin-like autophagy protein Apg12 ; In 94.53
cd0179470 DC_UbP_C dendritic cell derived ubiquitin-like pro 86.51
cd0180577 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo 84.61
PF0024069 ubiquitin: Ubiquitin family; InterPro: IPR000626 U 83.75
PF11816331 DUF3337: Domain of unknown function (DUF3337); Int 81.5
PF1197672 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter 80.73
smart0021364 UBQ Ubiquitin homologues. Ubiquitin-mediated prote 80.51
>KOG1654|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.9e-48  Score=287.14  Aligned_cols=116  Identities=68%  Similarity=1.092  Sum_probs=114.1

Q ss_pred             CCCcccccCCHHHHHHHHHHHHhhCCCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEE
Q psy8038           1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFV   80 (157)
Q Consensus         1 ~~~~~k~~~~~~~R~~E~~~ir~kyP~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfV   80 (157)
                      |+.+||++|||++|++|+++||+|||+|||||||++++++||+|||+|||||.++|||||+.+||+||+|+|++||||||
T Consensus         1 ~~~~FK~~~~fe~R~~E~~~Ir~kyP~riPVIvEk~~~~~lp~lDK~KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfV   80 (116)
T KOG1654|consen    1 MKSSFKERHPFEKRKAEVRRIREKYPDRIPVIVEKAGKSQLPDLDKKKYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFV   80 (116)
T ss_pred             CcchhhccCCHHHHHHHHHHHHHHCCCCCcEEEEecccccCcccccceeeccccccHHHHHHHHHHHhccChhHeEEEEE
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCchhhhcceeeeEecCCCCCCCCCCcccccccCCCccchhhhhhhcccCCCcceEEEEecCCCcccc
Q psy8038          81 NNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG  153 (157)
Q Consensus        81 nn~lps~s~~m~~lY~VIvEr~~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~~~~a~~L~v~y~~~~~~g  153 (157)
                      ||.+|+++++|++||+                                     -+.++++|||+.||+|||||
T Consensus        81 n~~~p~ts~~ms~~Ye-------------------------------------~~kdeDgFLYm~Ys~e~tfG  116 (116)
T KOG1654|consen   81 NNTSPPTSATMSALYE-------------------------------------EEKDEDGFLYMTYSGENTFG  116 (116)
T ss_pred             cCcCCcchhhHHHHHH-------------------------------------hhcccCcEEEEEeccccccC
Confidence            9999999999999999                                     77899999999999999999

>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein Back     alignment and domain information
>PTZ00380 microtubule-associated protein (MAP); Provisional Back     alignment and domain information
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules Back     alignment and domain information
>cd01612 APG12_C Ubiquitin-like domain of APG12 Back     alignment and domain information
>KOG1654|consensus Back     alignment and domain information
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules Back     alignment and domain information
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein Back     alignment and domain information
>KOG3439|consensus Back     alignment and domain information
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PTZ00380 microtubule-associated protein (MAP); Provisional Back     alignment and domain information
>cd01612 APG12_C Ubiquitin-like domain of APG12 Back     alignment and domain information
>KOG3439|consensus Back     alignment and domain information
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein Back     alignment and domain information
>cd01805 RAD23_N Ubiquitin-like domain of RAD23 Back     alignment and domain information
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade Back     alignment and domain information
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins Back     alignment and domain information
>smart00213 UBQ Ubiquitin homologues Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query157
3m95_A125 Crystal Structure Of Autophagy-Related Protein Atg8 1e-55
1kjt_A119 Crystal Structure Of The Gaba(A) Receptor Associate 8e-54
1kot_A119 Solution Structure Of Human Gaba Receptor Associate 1e-53
1gnu_A117 Gaba(a) Receptor Associated Protein Gabarap Length 1e-53
2l8j_A119 Gabarapl-1 Nbr1-Lir Complex Structure Length = 119 1e-47
2r2q_A110 Crystal Structure Of Human Gamma-Aminobutyric Acid 6e-46
2kwc_A116 The Nmr Structure Of The Autophagy-Related Protein 2e-32
2li5_A117 Nmr Structure Of Atg8-Atg7c30 Complex Length = 117 2e-32
3vh3_B119 Crystal Structure Of Atg7ctd-Atg8 Complex Length = 3e-32
3rui_B118 Crystal Structure Of Atg7c-Atg8 Complex Length = 11 2e-31
2kq7_A119 Solution Structure Of The Autophagy-Related Protein 2e-31
2zpn_A119 The Crystal Structure Of Saccharomyces Cerevisiae A 2e-31
1eo6_A117 Crystal Structure Of Gate-16 Length = 117 1e-30
3h9d_A119 Crystal Structure Of Trypanosoma Brucei Atg8 Length 5e-25
3h9d_A119 Crystal Structure Of Trypanosoma Brucei Atg8 Length 5e-08
4eoy_A128 Plasmodium Falciparum Atg8 In Complex With Plasmodi 6e-17
3vvw_B128 Ndp52 In Complex With Lc3c Length = 128 1e-13
3eci_A122 Microtubule-Associated Protein 1 Light Chain 3 Alph 1e-09
2zjd_A130 Crystal Structure Of Lc3-P62 Complex Length = 130 1e-08
2z0e_B129 The Crystal Structure Of Human Atg4b- Lc3(1-124) Co 2e-08
2k6q_A121 Lc3 P62 Complex Structure Length = 121 2e-08
1v49_A120 Solution Structure Of Microtubule-Associated Protei 2e-08
1ugm_A125 Crystal Structure Of Lc3 Length = 125 2e-08
>pdb|3M95|A Chain A, Crystal Structure Of Autophagy-Related Protein Atg8 From The Silkworm Bombyx Mori Length = 125 Back     alignment and structure 
Iteration: 1

 Score =  211 bits (538), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 110/153 (71%), Positives = 114/153 (74%), Gaps = 37/153 (24%)
Query: 1   MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
           MKFQYKEEH FEKRKAEGEKIRRKYPDRVPVIVEKAPKAR+GDLDKKKYLVPSDLTVGQF
Sbjct: 9   MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 68
Query: 61  YFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSD 120
           YFLIRKR+ LRPEDALFFFVNNVIPPTSATMGSLYQ                        
Sbjct: 69  YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQ------------------------ 104
Query: 121 LTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
                        EHH+EDFFLYIA+SDENVYG
Sbjct: 105 -------------EHHDEDFFLYIAFSDENVYG 124
>pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Receptor Associated Protein, Gabarap Length = 119 Back     alignment and structure
>pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Receptor Associated Protein Gabarap Length = 119 Back     alignment and structure
>pdb|1GNU|A Chain A, Gaba(a) Receptor Associated Protein Gabarap Length = 117 Back     alignment and structure
>pdb|2L8J|A Chain A, Gabarapl-1 Nbr1-Lir Complex Structure Length = 119 Back     alignment and structure
>pdb|2R2Q|A Chain A, Crystal Structure Of Human Gamma-Aminobutyric Acid Receptor- Associated Protein-Like 1 (Gabarap1), Isoform Cra_a Length = 110 Back     alignment and structure
>pdb|2KWC|A Chain A, The Nmr Structure Of The Autophagy-Related Protein Atg8 Length = 116 Back     alignment and structure
>pdb|2LI5|A Chain A, Nmr Structure Of Atg8-Atg7c30 Complex Length = 117 Back     alignment and structure
>pdb|3VH3|B Chain B, Crystal Structure Of Atg7ctd-Atg8 Complex Length = 119 Back     alignment and structure
>pdb|3RUI|B Chain B, Crystal Structure Of Atg7c-Atg8 Complex Length = 118 Back     alignment and structure
>pdb|2KQ7|A Chain A, Solution Structure Of The Autophagy-Related Protein Atg8 Length = 119 Back     alignment and structure
>pdb|2ZPN|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg8- Atg19(412-415) Complex Length = 119 Back     alignment and structure
>pdb|1EO6|A Chain A, Crystal Structure Of Gate-16 Length = 117 Back     alignment and structure
>pdb|3H9D|A Chain A, Crystal Structure Of Trypanosoma Brucei Atg8 Length = 119 Back     alignment and structure
>pdb|3H9D|A Chain A, Crystal Structure Of Trypanosoma Brucei Atg8 Length = 119 Back     alignment and structure
>pdb|4EOY|A Chain A, Plasmodium Falciparum Atg8 In Complex With Plasmodium Falciparum Atg3 Peptide Length = 128 Back     alignment and structure
>pdb|3VVW|B Chain B, Ndp52 In Complex With Lc3c Length = 128 Back     alignment and structure
>pdb|3ECI|A Chain A, Microtubule-Associated Protein 1 Light Chain 3 Alpha Isoform A (Map1alc3) Length = 122 Back     alignment and structure
>pdb|2ZJD|A Chain A, Crystal Structure Of Lc3-P62 Complex Length = 130 Back     alignment and structure
>pdb|2Z0E|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-124) Complex Length = 129 Back     alignment and structure
>pdb|2K6Q|A Chain A, Lc3 P62 Complex Structure Length = 121 Back     alignment and structure
>pdb|1V49|A Chain A, Solution Structure Of Microtubule-Associated Protein Light Chain-3 Length = 120 Back     alignment and structure
>pdb|1UGM|A Chain A, Crystal Structure Of Lc3 Length = 125 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query157
1eo6_A117 GATE-16, golgi-associated ATPase enhancer of 16 KD 1e-42
3rui_B118 Autophagy-related protein 8; autophagosome formati 9e-42
3m95_A125 Autophagy related protein ATG8; alpha slash beta, 2e-40
2r2q_A110 Gamma-aminobutyric acid receptor-associated protei 2e-38
3h9d_A119 ATG8, microtubule-associated protein 1A/1B, light 3e-38
2zjd_A130 Microtubule-associated proteins 1A/1B light chain 2e-35
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3 Length = 117 Back     alignment and structure
 Score =  136 bits (344), Expect = 1e-42
 Identities = 67/153 (43%), Positives = 87/153 (56%), Gaps = 37/153 (24%)

Query: 1   MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
           MK+ +KE+H  E R  E  KIR KYPDRVPVIVEK   ++I D+DK+KYLVPSD+TV QF
Sbjct: 1   MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF 60

Query: 61  YFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSD 120
            ++IRKR+QL  E A+F FV+  +P +S TMG LY+                        
Sbjct: 61  MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYE------------------------ 96

Query: 121 LTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
                        +  +ED FLY+AYS EN +G
Sbjct: 97  -------------KEKDEDGFLYVAYSGENTFG 116
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 2kq7_A 2zpn_A 2kwc_A 2li5_A 3vh3_B 3vh4_B* Length = 118 Back     alignment and structure
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} Length = 125 Back     alignment and structure
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A Length = 110 Back     alignment and structure
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} Length = 119 Back     alignment and structure
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A Length = 130 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query157
3m95_A125 Autophagy related protein ATG8; alpha slash beta, 100.0
3rui_B118 Autophagy-related protein 8; autophagosome formati 100.0
3h9d_A119 ATG8, microtubule-associated protein 1A/1B, light 100.0
1eo6_A117 GATE-16, golgi-associated ATPase enhancer of 16 KD 100.0
2zjd_A130 Microtubule-associated proteins 1A/1B light chain 100.0
2r2q_A110 Gamma-aminobutyric acid receptor-associated protei 100.0
4gdk_A91 Ubiquitin-like protein ATG12; protein-protein conj 99.92
1wz3_A96 Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, pla 99.92
3w1s_C91 Ubiquitin-like protein ATG12; ubiquitin fold, E3-l 99.88
3m95_A125 Autophagy related protein ATG8; alpha slash beta, 99.58
3h9d_A119 ATG8, microtubule-associated protein 1A/1B, light 99.56
3rui_B118 Autophagy-related protein 8; autophagosome formati 99.56
2zjd_A130 Microtubule-associated proteins 1A/1B light chain 99.44
1eo6_A117 GATE-16, golgi-associated ATPase enhancer of 16 KD 99.39
2r2q_A110 Gamma-aminobutyric acid receptor-associated protei 99.37
4gdk_A91 Ubiquitin-like protein ATG12; protein-protein conj 99.12
1wz3_A96 Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, pla 98.94
3w1s_C91 Ubiquitin-like protein ATG12; ubiquitin fold, E3-l 98.81
3goe_A82 DNA repair protein RAD60; SUMO-like domain, sumoyl 92.09
4fbj_B88 NEDD8; effector-HOST target complex, glutamine dea 85.18
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3 Back     alignment and structure
Probab=100.00  E-value=1.7e-47  Score=289.28  Aligned_cols=117  Identities=94%  Similarity=1.478  Sum_probs=113.2

Q ss_pred             CCCcccccCCHHHHHHHHHHHHhhCCCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEE
Q psy8038           1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFV   80 (157)
Q Consensus         1 ~~~~~k~~~~~~~R~~E~~~ir~kyP~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfV   80 (157)
                      |+++||++||||+|++|+++||+|||+|||||||+++++++|+|||+|||||.++||+||+.+||+||+|++++||||||
T Consensus         9 ~~~~fK~~~s~e~R~~e~~~ir~kyP~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~V   88 (125)
T 3m95_A            9 MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFV   88 (125)
T ss_dssp             CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEB
T ss_pred             ceeeecccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCchhhhcceeeeEecCCCCCCCCCCcccccccCCCccchhhhhhhcccCCCcceEEEEecCCCccccc
Q psy8038          81 NNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVYGA  154 (157)
Q Consensus        81 nn~lps~s~~m~~lY~VIvEr~~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~~~~a~~L~v~y~~~~~~g~  154 (157)
                      ||++|++|++||+||+                                     -..++|+||||+||+|++||.
T Consensus        89 nn~lPs~s~~m~~lY~-------------------------------------~~kdeDGfLY~~Ys~e~tfG~  125 (125)
T 3m95_A           89 NNVIPPTSATMGSLYQ-------------------------------------EHHDEDFFLYIAFSDENVYGN  125 (125)
T ss_dssp             TTBCCCTTSBHHHHHH-------------------------------------HHCCTTSCEEEEEESSSCC--
T ss_pred             CCccCCccchHHHHHH-------------------------------------HcCCCCCeEEEEecCccccCC
Confidence            9999999999999999                                     667899999999999999993
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B* Back     alignment and structure
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0 Back     alignment and structure
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3 Back     alignment and structure
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A Back     alignment and structure
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A Back     alignment and structure
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A Back     alignment and structure
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7 Back     alignment and structure
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3 Back     alignment and structure
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0 Back     alignment and structure
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B* Back     alignment and structure
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A Back     alignment and structure
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3 Back     alignment and structure
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A Back     alignment and structure
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A Back     alignment and structure
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7 Back     alignment and structure
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A* Back     alignment and structure
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 157
d1eo6a_116 d.15.1.3 (A:) Golgi-associated ATPase enhancer of 9e-51
d3d32a1118 d.15.1.3 (A:1-118) GABA(A) receptor associated pro 7e-49
d2zjda1119 d.15.1.3 (A:2-120) Microtubule-associated proteins 3e-39
>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]} Length = 116 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Golgi-associated ATPase enhancer of 16 kD, Gate-16
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  156 bits (395), Expect = 9e-51
 Identities = 67/153 (43%), Positives = 87/153 (56%), Gaps = 37/153 (24%)

Query: 1   MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
           MK+ +KE+H  E R  E  KIR KYPDRVPVIVEK   ++I D+DK+KYLVPSD+TV QF
Sbjct: 1   MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF 60

Query: 61  YFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSD 120
            ++IRKR+QL  E A+F FV+  +P +S TMG LY+                        
Sbjct: 61  MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYE------------------------ 96

Query: 121 LTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
                        +  +ED FLY+AYS EN +G
Sbjct: 97  -------------KEKDEDGFLYVAYSGENTFG 116
>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query157
d1eo6a_116 Golgi-associated ATPase enhancer of 16 kD, Gate-16 100.0
d3d32a1118 GABA(A) receptor associated protein GABARAP {Human 100.0
d2zjda1119 Microtubule-associated proteins 1A/1B light chain 100.0
d1eo6a_116 Golgi-associated ATPase enhancer of 16 kD, Gate-16 99.54
d3d32a1118 GABA(A) receptor associated protein GABARAP {Human 99.51
d2zjda1119 Microtubule-associated proteins 1A/1B light chain 99.45
d1wz3a184 Autophagy-related protein 12b (APG12b) {Thale cres 99.06
d1wz3a184 Autophagy-related protein 12b (APG12b) {Thale cres 91.25
d1ttna180 Dendritic cell-derived ubiquitin-like protein {Hum 88.35
d1z2ma276 Interferon-induced 15 kDa protein {Human (Homo sap 86.33
d1bt0a_73 Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI 83.1
d1m94a_73 Ubiquitin-like modifier protein hub1 {Baker's yeas 81.2
d1uh6a_100 Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu 81.1
d1j8ca_103 Ubiquitin-like N-terminal domain of PLIC-2 {Human 80.66
d1wh3a_87 2'-5'-oligoadenylate synthetase-like protein, OASL 80.18
>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Golgi-associated ATPase enhancer of 16 kD, Gate-16
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-47  Score=284.38  Aligned_cols=116  Identities=58%  Similarity=1.003  Sum_probs=114.2

Q ss_pred             CCCcccccCCHHHHHHHHHHHHhhCCCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEE
Q psy8038           1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFV   80 (157)
Q Consensus         1 ~~~~~k~~~~~~~R~~E~~~ir~kyP~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfV   80 (157)
                      |+++||++||||+|++|+++|++|||+|||||||+++++++|+||++|||||+|+|+|||+++||+||+|++++||||||
T Consensus         1 m~~~fk~~~sfe~R~~es~~i~~KyP~rIPVIve~~~~~~l~~ldk~KfLVP~dltv~qf~~vIRkrl~l~~~~alflfv   80 (116)
T d1eo6a_           1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFV   80 (116)
T ss_dssp             CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEB
T ss_pred             CCccccccCCHHHHHHHHHHHHHHCCCCceEEEEECCcCcCCcccCcEEeecCCCcHHHHHHHHHHHcCCCccceEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCchhhhcceeeeEecCCCCCCCCCCcccccccCCCccchhhhhhhcccCCCcceEEEEecCCCcccc
Q psy8038          81 NNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG  153 (157)
Q Consensus        81 nn~lps~s~~m~~lY~VIvEr~~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~~~~a~~L~v~y~~~~~~g  153 (157)
                      ||.+|+++++||+||+                                     -..++|+||||.|++|||||
T Consensus        81 ~~~l~~~s~~i~~lY~-------------------------------------~~KdeDGfLYi~Ys~entFG  116 (116)
T d1eo6a_          81 DKTVPQSSLTMGQLYE-------------------------------------KEKDEDGFLYVAYSGENTFG  116 (116)
T ss_dssp             TTBCCCTTSBHHHHHH-------------------------------------HHCCTTSCEEEEEECCCCCC
T ss_pred             CCcccchhhhHHHHHH-------------------------------------HcCCCCcEEEEEEeccccCC
Confidence            9999999999999999                                     77789999999999999999
>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure