Psyllid ID: psy8041

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIALFFRTTQNVFVLFVGHRLKIR
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHccccccccccEEEcHHHHHHHHHHHHHHccccccccEEEEEcccccccccccEEEEEcccEEEEEEcccccccccccccEEcccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHccccccccccEEccHHHHHHHHHHHHHcccccccccEEEEEccccccccccEEEEEEcccEEEEEEcccccccccEEEEEEEEEc
Coil and Loop (DISEMBL)
METTCESFSVIAATLanggicpiteekvlrseSVRDVLSLMHScgmydysgqfafkvglpaksgvsgsmLVVVPNTMGIALFFRTTQNVFVLFVGHRLKIR
Flexible Loop (DISEMBL)
METTCESFSVIAAtlanggicpiteekvlrseSVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIALFFRTTQNVFVLFVGHRLKIR
Low Complexity Region (SEG)
METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIALFFRTTQNVFVLFVGHRLKIR
Disordered region (IsUnstruct)
*****ESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIALFFRTTQNVFVLFVGHRL***
Disordered Region (DISOPRED)
METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIALFFRTTQNVFVLFVGHRLKI*
Disordered Region (DISEMBL)
METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIALFFRTTQNVFVLFVGHRLKIR
Disordered Region (DISPRO)
METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIALFFRTTQNVFVLFVGHRLKIR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIALFFRTTQNVFVLFVGHRLKIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
Q9UI32	602	Glutaminase liver isoform	yes	N/A	0.782	0.131	0.759	2e-29
Q571F8	602	Glutaminase liver isoform	yes	N/A	0.782	0.131	0.759	2e-29
P28492	602	Glutaminase liver isoform	no	N/A	0.782	0.131	0.759	2e-29
D3Z7P3	674	Glutaminase kidney isofor	no	N/A	0.782	0.117	0.746	2e-29
P13264	674	Glutaminase kidney isofor	no	N/A	0.782	0.117	0.746	2e-29
O94925	669	Glutaminase kidney isofor	no	N/A	0.782	0.118	0.746	2e-29
Q19013	605	Putative glutaminase DH11	no	N/A	0.811	0.135	0.707	4e-29
Q93650	583	Putative glutaminase F30F	no	N/A	0.811	0.140	0.646	6e-29
B0C9Y4	321	Glutaminase OS=Acaryochlo	yes	N/A	0.782	0.246	0.582	3e-23
Q8YSZ5	334	Glutaminase OS=Nostoc sp.	yes	N/A	0.782	0.236	0.544	4e-22

>sp|Q9UI32|GLSL_HUMAN Glutaminase liver isoform, mitochondrial OS=Homo sapiens GN=GLS2 PE=1 SV=2

 Score =  127 bits (320), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/79 (75%), Positives = 70/79 (88%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           +E TCES SV+AATLANGGICPIT E VL +E+VR+ LSLMHSCGMYD+SGQFAF VGLP
Sbjct: 353 VEVTCESGSVMAATLANGGICPITGESVLSAEAVRNTLSLMHSCGMYDFSGQFAFHVGLP 412

Query: 61  AKSGVSGSMLVVVPNTMGI 79
           AKS VSG++L+VVPN MG+
Sbjct: 413 AKSAVSGAILLVVPNVMGM 431

Plays an important role in the regulation of glutamine catabolism. Promotes mitochondrial respiration and increases ATP generation in cells by catalyzing the synthesis of glutamate and alpha-ketoglutarate. Increases cellular anti-oxidant function via NADH and glutathione production. May play a role in preventing tumor proliferation.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 2

>sp|Q571F8|GLSL_MOUSE Glutaminase liver isoform, mitochondrial OS=Mus musculus GN=Gls2 PE=2 SV=2

 Score =  127 bits (320), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/79 (75%), Positives = 70/79 (88%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           +E TCES SV+AATLANGGICPIT E VL +E+VR+ LSLMHSCGMYD+SGQFAF VGLP
Sbjct: 353 VEVTCESGSVMAATLANGGICPITGESVLSAEAVRNTLSLMHSCGMYDFSGQFAFHVGLP 412

Query: 61  AKSGVSGSMLVVVPNTMGI 79
           AKS VSG++L+VVPN MG+
Sbjct: 413 AKSAVSGAILLVVPNVMGM 431

Plays an important role in the regulation of glutamine catabolism. Promotes mitochondrial respiration and increases ATP generation in cells by catalyzing the synthesis of glutamate and alpha-ketoglutarate. Increases cellular anti-oxidant function via NADH and glutathione production.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|P28492|GLSL_RAT Glutaminase liver isoform, mitochondrial OS=Rattus norvegicus GN=Gls2 PE=2 SV=3

 Score =  127 bits (320), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/79 (75%), Positives = 70/79 (88%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           +E TCES SV+AATLANGGICPIT E VL +E+VR+ LSLMHSCGMYD+SGQFAF VGLP
Sbjct: 353 VEVTCESGSVMAATLANGGICPITGESVLSAEAVRNTLSLMHSCGMYDFSGQFAFHVGLP 412

Query: 61  AKSGVSGSMLVVVPNTMGI 79
           AKS VSG++L+VVPN MG+
Sbjct: 413 AKSAVSGAILLVVPNVMGM 431

Plays an important role in the regulation of glutamine catabolism. Promotes mitochondrial respiration and increases ATP generation in cells by catalyzing the synthesis of glutamate and alpha-ketoglutarate. Increases cellular anti-oxidant function via NADH and glutathione production.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|D3Z7P3|GLSK_MOUSE Glutaminase kidney isoform, mitochondrial OS=Mus musculus GN=Gls PE=1 SV=1

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 69/79 (87%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           +E TCES SV+AATLANGG CPIT E+VL  E+VR+ LSLMHSCGMYD+SGQFAF VGLP
Sbjct: 425 IEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLP 484

Query: 61  AKSGVSGSMLVVVPNTMGI 79
           AKSGV+G +L+VVPN MG+
Sbjct: 485 AKSGVAGGILLVVPNVMGM 503

Catalyzes the first reaction in the primary pathway for the renal catabolism of glutamine. Plays a role in maintaining acid-base homeostasis. Regulates the levels of the neurotransmitter glutamate in the brain.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|P13264|GLSK_RAT Glutaminase kidney isoform, mitochondrial OS=Rattus norvegicus GN=Gls PE=1 SV=2

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 69/79 (87%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           +E TCES SV+AATLANGG CPIT E+VL  E+VR+ LSLMHSCGMYD+SGQFAF VGLP
Sbjct: 425 IEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLP 484

Query: 61  AKSGVSGSMLVVVPNTMGI 79
           AKSGV+G +L+VVPN MG+
Sbjct: 485 AKSGVAGGILLVVPNVMGM 503

Catalyzes the first reaction in the primary pathway for the renal catabolism of glutamine. Plays a role in maintaining acid-base homeostasis. Regulates the levels of the neurotransmitter glutamate in the brain.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|O94925|GLSK_HUMAN Glutaminase kidney isoform, mitochondrial OS=Homo sapiens GN=GLS PE=1 SV=1

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 69/79 (87%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           +E TCES SV+AATLANGG CPIT E+VL  E+VR+ LSLMHSCGMYD+SGQFAF VGLP
Sbjct: 420 IEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLP 479

Query: 61  AKSGVSGSMLVVVPNTMGI 79
           AKSGV+G +L+VVPN MG+
Sbjct: 480 AKSGVAGGILLVVPNVMGM 498

Catalyzes the first reaction in the primary pathway for the renal catabolism of glutamine. Plays a role in maintaining acid-base homeostasis. Regulates the levels of the neurotransmitter glutamate in the brain. Isoform 2 lacks catalytic activity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|Q19013|GLSA_CAEEL Putative glutaminase DH11.1 OS=Caenorhabditis elegans GN=DH11.1 PE=3 SV=2

 Score =  126 bits (316), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 58/82 (70%), Positives = 68/82 (82%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           +E TCES +V+A+TLANGG+CPIT E  +     RDVLSLM+SCGMYD SGQF+F VGLP
Sbjct: 348 VEVTCESLAVMASTLANGGVCPITNETCVDPNPCRDVLSLMYSCGMYDASGQFSFNVGLP 407

Query: 61  AKSGVSGSMLVVVPNTMGIALF 82
           AKSGVSG+M+VVVPN MGI LF
Sbjct: 408 AKSGVSGAMIVVVPNVMGICLF 429

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|Q93650|GLSB_CAEEL Putative glutaminase F30F8.2 OS=Caenorhabditis elegans GN=F30F8.2 PE=3 SV=2

 Score =  125 bits (315), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 53/82 (64%), Positives = 70/82 (85%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           +ET C+S +V+AATLANGG+ P+  E+++ + + RD LSLM+SCGMYD+SGQFAF VGLP
Sbjct: 350 IETNCDSLAVMAATLANGGVNPMNGERIVNNRACRDTLSLMYSCGMYDWSGQFAFHVGLP 409

Query: 61  AKSGVSGSMLVVVPNTMGIALF 82
           AKSGVSG M++V+PN MGIAL+
Sbjct: 410 AKSGVSGDMIIVIPNVMGIALY 431

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|B0C9Y4|GLSA_ACAM1 Glutaminase OS=Acaryochloris marina (strain MBIC 11017) GN=glsA PE=3 SV=1

 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 46/79 (58%), Positives = 65/79 (82%)

Query: 4   TCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKS 63
            C   +V+AATLA+ GI PIT+E+ + S  V+D+LS+M++CGMYD++G++A+KVGLPAKS
Sbjct: 198 NCHDLAVMAATLAHKGINPITQERAVESGYVKDILSVMYTCGMYDFAGEWAYKVGLPAKS 257

Query: 64  GVSGSMLVVVPNTMGIALF 82
           GVSG ++ VVPN  GIA+F
Sbjct: 258 GVSGGIMAVVPNRAGIAVF 276

Acaryochloris marina (strain MBIC 11017) (taxid: 329726)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|Q8YSZ5|GLSA_NOSS1 Glutaminase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=glsA PE=3 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 64/79 (81%)

Query: 4   TCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKS 63
            C   +V+AATLAN G+ PIT E+ + S  ++D+LS+M++CGMY+++G++A+KVG+PAKS
Sbjct: 210 NCHDLAVMAATLANRGVNPITGEQAVNSRYIKDILSVMYTCGMYNFAGEWAYKVGIPAKS 269

Query: 64  GVSGSMLVVVPNTMGIALF 82
           GV G ++ VVPN MGIA+F
Sbjct: 270 GVCGGIMAVVPNLMGIAVF 288

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
322782966	583	hypothetical protein SINV_11407 [Solenop	0.782	0.135	0.848	1e-34
345479103	660	PREDICTED: glutaminase kidney isoform, m	0.782	0.119	0.848	2e-34
307191532	616	Glutaminase kidney isoform, mitochondria	0.782	0.128	0.835	3e-34
307192336	627	Glutaminase kidney isoform, mitochondria	0.782	0.125	0.822	1e-33
340718860	583	PREDICTED: glutaminase kidney isoform, m	0.782	0.135	0.822	2e-33
357618015	627	putative glutaminase [Danaus plexippus]	0.782	0.125	0.822	3e-33
383848767	636	PREDICTED: glutaminase kidney isoform, m	0.811	0.128	0.804	3e-33
332016590	731	Glutaminase kidney isoform, mitochondria	0.811	0.112	0.792	3e-33
350419766	583	PREDICTED: glutaminase kidney isoform, m	0.782	0.135	0.810	3e-33
350419763	636	PREDICTED: glutaminase kidney isoform, m	0.782	0.124	0.810	3e-33

>gi|322782966|gb|EFZ10684.1| hypothetical protein SINV_11407 [Solenopsis invicta]

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/79 (84%), Positives = 74/79 (93%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           ME  CE+ SV+AATLANGGICPITEEKVL+ +SVRDVLSLMHSCGMYDYSGQFAFKVG+P
Sbjct: 370 MEANCETMSVMAATLANGGICPITEEKVLKPDSVRDVLSLMHSCGMYDYSGQFAFKVGIP 429

Query: 61  AKSGVSGSMLVVVPNTMGI 79
           AKSGVSGS+LVV+PN MGI
Sbjct: 430 AKSGVSGSLLVVIPNVMGI 448

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479103|ref|XP_001601673.2| PREDICTED: glutaminase kidney isoform, mitochondrial-like [Nasonia vitripennis]

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 67/79 (84%), Positives = 74/79 (93%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           ME  CES +V+AATLANGGICPITEEKVL+ +SVRDVLSLMHSCGMYDYSGQFAFKVG+P
Sbjct: 381 MEANCESMAVMAATLANGGICPITEEKVLKPDSVRDVLSLMHSCGMYDYSGQFAFKVGIP 440

Query: 61  AKSGVSGSMLVVVPNTMGI 79
           AKSGVSGS+LVV+PN MGI
Sbjct: 441 AKSGVSGSLLVVIPNVMGI 459

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191532|gb|EFN75035.1| Glutaminase kidney isoform, mitochondrial [Camponotus floridanus]

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/79 (83%), Positives = 74/79 (93%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           ME  CE+ +VIAATLANGGICPITEEKVL+ +SVRDVLSLMHSCGMYDYSGQFAFKVG+P
Sbjct: 358 MEANCETMAVIAATLANGGICPITEEKVLKPDSVRDVLSLMHSCGMYDYSGQFAFKVGIP 417

Query: 61  AKSGVSGSMLVVVPNTMGI 79
           AKSGVSGS+L+V+PN MGI
Sbjct: 418 AKSGVSGSLLLVIPNVMGI 436

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192336|gb|EFN75602.1| Glutaminase kidney isoform, mitochondrial [Harpegnathos saltator]

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/79 (82%), Positives = 73/79 (92%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           ME  CE+ +V+AATLANGGICPITEEKVL+ +SVRDVLSLMHSCGMYDYSGQFAFKVG+P
Sbjct: 370 MEANCETMAVMAATLANGGICPITEEKVLKPDSVRDVLSLMHSCGMYDYSGQFAFKVGIP 429

Query: 61  AKSGVSGSMLVVVPNTMGI 79
           AKSGVSG +LVV+PN MGI
Sbjct: 430 AKSGVSGCLLVVIPNVMGI 448

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718860|ref|XP_003397881.1| PREDICTED: glutaminase kidney isoform, mitochondrial-like isoform 1 [Bombus terrestris]

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/79 (82%), Positives = 73/79 (92%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           ME  C++ SV+AATLANGGICPITEEKVL+ +SVRDVLSLMHSCGMYDYSGQFAFKVG+P
Sbjct: 326 MEANCDTMSVMAATLANGGICPITEEKVLKPDSVRDVLSLMHSCGMYDYSGQFAFKVGIP 385

Query: 61  AKSGVSGSMLVVVPNTMGI 79
           AKSGVSG +LVV+PN MGI
Sbjct: 386 AKSGVSGCLLVVIPNVMGI 404

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357618015|gb|EHJ71111.1| putative glutaminase [Danaus plexippus]

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 65/79 (82%), Positives = 73/79 (92%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           ME  C+  S++AATLANGGICPIT+EKVLR +SVR+VLSLMHSCGMYDYSGQFAFKVGLP
Sbjct: 357 MEANCDIMSIMAATLANGGICPITDEKVLRPDSVRNVLSLMHSCGMYDYSGQFAFKVGLP 416

Query: 61  AKSGVSGSMLVVVPNTMGI 79
           AKSGVSG+ML+VVPN MGI
Sbjct: 417 AKSGVSGAMLIVVPNVMGI 435

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848767|ref|XP_003700019.1| PREDICTED: glutaminase kidney isoform, mitochondrial-like [Megachile rotundata]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/82 (80%), Positives = 75/82 (91%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           ME  C++ SV+AATLANGGICPITEEKVL+ +SVRDVLSLMHSCGMYDYSGQFAFKVG+P
Sbjct: 379 MEANCDTMSVMAATLANGGICPITEEKVLKPDSVRDVLSLMHSCGMYDYSGQFAFKVGIP 438

Query: 61  AKSGVSGSMLVVVPNTMGIALF 82
           AKSGVSGS+LVV+PN MGI  +
Sbjct: 439 AKSGVSGSLLVVIPNVMGICTW 460

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332016590|gb|EGI57471.1| Glutaminase kidney isoform, mitochondrial [Acromyrmex echinatior]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/82 (79%), Positives = 75/82 (91%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           ME  CE+ +V+AATLANGGICP+TEEKVL+ +SVRDVLSLMHSCGMYDYSGQFAFKVG+P
Sbjct: 476 MEANCETMAVMAATLANGGICPVTEEKVLKPDSVRDVLSLMHSCGMYDYSGQFAFKVGIP 535

Query: 61  AKSGVSGSMLVVVPNTMGIALF 82
           AKSGVSGS+LVV+PN MGI  +
Sbjct: 536 AKSGVSGSLLVVIPNVMGICTW 557

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419766|ref|XP_003492294.1| PREDICTED: glutaminase kidney isoform, mitochondrial-like isoform 2 [Bombus impatiens]

 Score =  145 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 64/79 (81%), Positives = 73/79 (92%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           ME  C++ +V+AATLANGGICPITEEKVL+ +SVRDVLSLMHSCGMYDYSGQFAFKVG+P
Sbjct: 326 MEANCDTMAVMAATLANGGICPITEEKVLKPDSVRDVLSLMHSCGMYDYSGQFAFKVGIP 385

Query: 61  AKSGVSGSMLVVVPNTMGI 79
           AKSGVSG +LVV+PN MGI
Sbjct: 386 AKSGVSGCLLVVIPNVMGI 404

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419763|ref|XP_003492293.1| PREDICTED: glutaminase kidney isoform, mitochondrial-like isoform 1 [Bombus impatiens]

 Score =  145 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 64/79 (81%), Positives = 73/79 (92%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           ME  C++ +V+AATLANGGICPITEEKVL+ +SVRDVLSLMHSCGMYDYSGQFAFKVG+P
Sbjct: 379 MEANCDTMAVMAATLANGGICPITEEKVLKPDSVRDVLSLMHSCGMYDYSGQFAFKVGIP 438

Query: 61  AKSGVSGSMLVVVPNTMGI 79
           AKSGVSG +LVV+PN MGI
Sbjct: 439 AKSGVSGCLLVVIPNVMGI 457

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
FB|FBgn0261625	775	CG42708 [Drosophila melanogast	0.782	0.101	0.797	8.3e-30
ZFIN|ZDB-GENE-050208-408	627	si:dkey-102c8.6 "si:dkey-102c8	0.782	0.125	0.784	9e-29
ZFIN|ZDB-GENE-030616-550	566	glsb "glutaminase b" [Danio re	0.782	0.139	0.784	1.7e-28
ZFIN|ZDB-GENE-081105-57	613	gls2 "glutaminase 2 (liver, mi	0.782	0.128	0.772	2.9e-28
UNIPROTKB|F1SN47	470	GLS "Uncharacterized protein"	0.782	0.168	0.746	9e-28
UNIPROTKB|F1NHM6	486	GLS "Uncharacterized protein"	0.782	0.162	0.746	9.2e-28
WB|WBGene00007480	841	glna-1 [Caenorhabditis elegans	0.811	0.097	0.719	1.1e-27
ZFIN|ZDB-GENE-050204-3	591	glsa "glutaminase a" [Danio re	0.782	0.133	0.759	1.2e-27
UNIPROTKB|F1NHF5	540	GLS "Uncharacterized protein"	0.782	0.146	0.746	1.7e-27
UNIPROTKB|F1SLB4	560	LOC100738224 "Uncharacterized	0.782	0.141	0.759	2e-27

FB|FBgn0261625 CG42708 [Drosophila melanogaster (taxid:7227)]

 Score = 339 (124.4 bits), Expect = 8.3e-30, P = 8.3e-30
 Identities = 63/79 (79%), Positives = 70/79 (88%)

Query:     1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
             MET CE+ SVIAA+LANGGICP TEEKV R E +RDVLS+MHSCG YDYSGQFAFKVGLP
Sbjct:   403 METNCEAMSVIAASLANGGICPTTEEKVFRPEVIRDVLSIMHSCGTYDYSGQFAFKVGLP 462

Query:    61 AKSGVSGSMLVVVPNTMGI 79
             AKSGVSG M++V+PN MGI
Sbjct:   463 AKSGVSGGMMLVIPNVMGI 481

GO:0005739 "mitochondrion" evidence=ISS

GO:0004359 "glutaminase activity" evidence=ISS

GO:0006541 "glutamine metabolic process" evidence=ISS

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

ZFIN|ZDB-GENE-050208-408 si:dkey-102c8.6 "si:dkey-102c8.6" [Danio rerio (taxid:7955)]

 Score = 327 (120.2 bits), Expect = 9.0e-29, P = 9.0e-29
 Identities = 62/79 (78%), Positives = 72/79 (91%)

Query:     1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
             +E TCES SV+AATLANGGICPIT E+VL +E+VR+ LSLMHSCGMYDYSGQFAF VGLP
Sbjct:   375 IEVTCESGSVMAATLANGGICPITGERVLSTEAVRNTLSLMHSCGMYDYSGQFAFHVGLP 434

Query:    61 AKSGVSGSMLVVVPNTMGI 79
             AKSGVSG++L+VVPN MG+
Sbjct:   435 AKSGVSGAVLLVVPNVMGV 453

GO:0004359 "glutaminase activity" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

ZFIN|ZDB-GENE-030616-550 glsb "glutaminase b" [Danio rerio (taxid:7955)]

 Score = 323 (118.8 bits), Expect = 1.7e-28, P = 1.7e-28
 Identities = 62/79 (78%), Positives = 69/79 (87%)

Query:     1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
             +E TCES SV+AATLANGG CPIT E+VL  E+VRD LSLMHSCGMYD+SGQFAF VGLP
Sbjct:   386 IEVTCESASVMAATLANGGFCPITGERVLSPEAVRDTLSLMHSCGMYDFSGQFAFHVGLP 445

Query:    61 AKSGVSGSMLVVVPNTMGI 79
             AKSGVSG +L+VVPN MGI
Sbjct:   446 AKSGVSGGILLVVPNVMGI 464

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0004359 "glutaminase activity" evidence=IEA

ZFIN|ZDB-GENE-081105-57 gls2 "glutaminase 2 (liver, mitochondrial)" [Danio rerio (taxid:7955)]

 Score = 322 (118.4 bits), Expect = 2.9e-28, P = 2.9e-28
 Identities = 61/79 (77%), Positives = 72/79 (91%)

Query:     1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
             +E TCES SV+AATLANGGICPIT E+VL +E+VR+ LSLMHSCGMYD+SGQFAF VGLP
Sbjct:   353 IEVTCESGSVMAATLANGGICPITGERVLSAEAVRNTLSLMHSCGMYDFSGQFAFHVGLP 412

Query:    61 AKSGVSGSMLVVVPNTMGI 79
             AKSGVSG++L+VVPN MG+
Sbjct:   413 AKSGVSGAVLLVVPNIMGV 431

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0004359 "glutaminase activity" evidence=IEA

UNIPROTKB|F1SN47 GLS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 312 (114.9 bits), Expect = 9.0e-28, P = 9.0e-28
 Identities = 59/79 (74%), Positives = 69/79 (87%)

Query:     1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
             +E TCES SV+AATLANGG CPIT E+VL  E+VR+ LSLMHSCGMYD+SGQFAF VGLP
Sbjct:   292 IEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLP 351

Query:    61 AKSGVSGSMLVVVPNTMGI 79
             AKSGV+G +L+VVPN MG+
Sbjct:   352 AKSGVAGGILLVVPNVMGM 370

GO:0007610 "behavior" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0006543 "glutamine catabolic process" evidence=IEA

GO:0006537 "glutamate biosynthetic process" evidence=IEA

GO:0004359 "glutaminase activity" evidence=IEA

GO:0002087 "regulation of respiratory gaseous exchange by neurological system process" evidence=IEA

UNIPROTKB|F1NHM6 GLS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 313 (115.2 bits), Expect = 9.2e-28, P = 9.2e-28
 Identities = 59/79 (74%), Positives = 69/79 (87%)

Query:     1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
             +E TCES SV+AATLANGG CPIT E+VL  E+VR+ LSLMHSCGMYD+SGQFAF VGLP
Sbjct:   288 IEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLP 347

Query:    61 AKSGVSGSMLVVVPNTMGI 79
             AKSGV+G +L+VVPN MG+
Sbjct:   348 AKSGVAGGILLVVPNVMGL 366

GO:0004359 "glutaminase activity" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

WB|WBGene00007480 glna-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 320 (117.7 bits), Expect = 1.1e-27, P = 1.1e-27
 Identities = 59/82 (71%), Positives = 72/82 (87%)

Query:     1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
             +ET C++ +V+AATLANGGICP+T EK L S   RD+LSLM+SCGMYDYSG+FAF+VGLP
Sbjct:   416 LETNCDTAAVMAATLANGGICPLTTEKCLGSRPCRDILSLMYSCGMYDYSGKFAFQVGLP 475

Query:    61 AKSGVSGSMLVVVPNTMGIALF 82
             AKSGVSG M+VV+PN MGIAL+
Sbjct:   476 AKSGVSGIMIVVIPNVMGIALY 497

GO:0004359 "glutaminase activity" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

ZFIN|ZDB-GENE-050204-3 glsa "glutaminase a" [Danio rerio (taxid:7955)]

 Score = 316 (116.3 bits), Expect = 1.2e-27, P = 1.2e-27
 Identities = 60/79 (75%), Positives = 69/79 (87%)

Query:     1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
             +E TCES SV+AATLANGG CPIT E+V+  E+VR+ LSLMHSCGMYD+SGQFAF VGLP
Sbjct:   343 IEVTCESASVMAATLANGGFCPITGERVVNPEAVRNTLSLMHSCGMYDFSGQFAFHVGLP 402

Query:    61 AKSGVSGSMLVVVPNTMGI 79
             AKSGVSG +L+VVPN MGI
Sbjct:   403 AKSGVSGGILLVVPNVMGI 421

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0004359 "glutaminase activity" evidence=IEA

UNIPROTKB|F1NHF5 GLS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 313 (115.2 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 59/79 (74%), Positives = 69/79 (87%)

Query:     1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
             +E TCES SV+AATLANGG CPIT E+VL  E+VR+ LSLMHSCGMYD+SGQFAF VGLP
Sbjct:   291 IEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLP 350

Query:    61 AKSGVSGSMLVVVPNTMGI 79
             AKSGV+G +L+VVPN MG+
Sbjct:   351 AKSGVAGGILLVVPNVMGL 369

GO:0004359 "glutaminase activity" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

UNIPROTKB|F1SLB4 LOC100738224 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 313 (115.2 bits), Expect = 2.0e-27, P = 2.0e-27
 Identities = 60/79 (75%), Positives = 70/79 (88%)

Query:     1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
             +E TCES SV+AATLANGGICPIT E VL +E+VR+ LSLMHSCGMYD+SGQFAF VGLP
Sbjct:   311 VEVTCESGSVMAATLANGGICPITGESVLSAEAVRNTLSLMHSCGMYDFSGQFAFHVGLP 370

Query:    61 AKSGVSGSMLVVVPNTMGI 79
             AKS VSG++L+VVPN MG+
Sbjct:   371 AKSAVSGAILLVVPNVMGM 389

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0004359 "glutaminase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8YSZ5	GLSA_NOSS1	3, ., 5, ., 1, ., 2	0.5443	0.7821	0.2365	yes	N/A
B0C9Y4	GLSA_ACAM1	3, ., 5, ., 1, ., 2	0.5822	0.7821	0.2461	yes	N/A
Q9UI32	GLSL_HUMAN	3, ., 5, ., 1, ., 2	0.7594	0.7821	0.1312	yes	N/A
A8EX66	GLSA_ARCB4	3, ., 5, ., 1, ., 2	0.5147	0.6732	0.2229	yes	N/A
Q571F8	GLSL_MOUSE	3, ., 5, ., 1, ., 2	0.7594	0.7821	0.1312	yes	N/A
B0JPM4	GLSA_MICAN	3, ., 5, ., 1, ., 2	0.5333	0.7425	0.2218	yes	N/A
Q3MEJ6	GLSA_ANAVT	3, ., 5, ., 1, ., 2	0.5316	0.7821	0.2365	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.1.2	LOW CONFIDENCE prediction!
3rd Layer	3.5.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	101
pfam04960	286	pfam04960, Glutaminase, Glutaminase	3e-40
TIGR03814	300	TIGR03814, Gln_ase, glutaminase A	6e-33
PRK00971	307	PRK00971, PRK00971, glutaminase; Provisional	4e-30
COG2066	309	COG2066, GlsA, Glutaminase [Amino acid transport a	5e-30
PRK12356	319	PRK12356, PRK12356, glutaminase; Reviewed	1e-27
PRK12357	326	PRK12357, PRK12357, glutaminase; Reviewed	2e-20

>gnl|CDD|191140 pfam04960, Glutaminase, Glutaminase

 Score =  133 bits (338), Expect = 3e-40
 Identities = 47/81 (58%), Positives = 62/81 (76%)

Query: 2   ETTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPA 61
           E +CE  +V+ ATLANGG+ PIT E+V+  +  R +L+LM +CGMYD SG FA++VGLPA
Sbjct: 177 EMSCEDLAVMGATLANGGVNPITGERVVSPDVARQILALMLTCGMYDASGDFAYRVGLPA 236

Query: 62  KSGVSGSMLVVVPNTMGIALF 82
           KSGV G +L VVP  MGIA++
Sbjct: 237 KSGVGGGILAVVPGVMGIAVW 257

This family of enzymes deaminates glutamine to glutamate EC:3.5.1.2. Length = 286

>gnl|CDD|234362 TIGR03814, Gln_ase, glutaminase A

 Score =  115 bits (290), Expect = 6e-33
 Identities = 42/82 (51%), Positives = 59/82 (71%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           +E TC   +     LANGG+ P+T E+V+ +E  R + +LM +CG+YD SG+FA++VGLP
Sbjct: 190 IEMTCRDLARAGLFLANGGVNPLTGEQVISAEVARRINALMLTCGLYDASGEFAYRVGLP 249

Query: 61  AKSGVSGSMLVVVPNTMGIALF 82
           AKSGV G +L VVP  MGIA++
Sbjct: 250 AKSGVGGGILAVVPGKMGIAVW 271

This family describes the enzyme glutaminase, from a larger family that includes serine-dependent beta-lactamases and penicillin-binding proteins. Many bacteria have two isozymes. This model is based on selected known glutaminases and their homologs within prokaryotes, with the exclusion of highly-derived (long branch) and architecturally varied homologs, so as to achieve conservative assignments. A sharp drop in scores occurs below 250, and cutoffs are set accordingly. The enzyme converts glutamine to glutamate, with the release of ammonia. Members tend to be described as glutaminase A (glsA), where B (glsB) is unknown and may not be homologous (as in Rhizobium etli). Some species have two isozymes that may both be designated A (GlsA1 and GlsA2) [Energy metabolism, Amino acids and amines]. Length = 300

>gnl|CDD|234880 PRK00971, PRK00971, glutaminase; Provisional

 Score =  108 bits (272), Expect = 4e-30
 Identities = 41/82 (50%), Positives = 55/82 (67%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           +E +C   +     LANGG+ P T E+V+     R V +LM +CGMYD SG+FA++VGLP
Sbjct: 197 LEMSCVDLARAGLFLANGGVSPHTGERVVSPRQARQVNALMLTCGMYDASGEFAYRVGLP 256

Query: 61  AKSGVSGSMLVVVPNTMGIALF 82
           AKSGV G +L VVP  M IA++
Sbjct: 257 AKSGVGGGILAVVPGEMAIAVW 278

Length = 307

>gnl|CDD|224977 COG2066, GlsA, Glutaminase [Amino acid transport and metabolism]

 Score =  108 bits (271), Expect = 5e-30
 Identities = 40/82 (48%), Positives = 59/82 (71%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           +E  C   + +   LANGG+ P+T E+V+ ++  R + +LM +CGMYD SG+FA++VGLP
Sbjct: 199 IEMNCVDLARLGLFLANGGVNPLTGERVVPADQARQINALMLTCGMYDASGEFAYRVGLP 258

Query: 61  AKSGVSGSMLVVVPNTMGIALF 82
           AKSGV G ++ VVP  MGIA++
Sbjct: 259 AKSGVGGGIMAVVPGEMGIAVW 280

Length = 309

>gnl|CDD|237073 PRK12356, PRK12356, glutaminase; Reviewed

 Score =  101 bits (255), Expect = 1e-27
 Identities = 36/79 (45%), Positives = 53/79 (67%)

Query: 4   TCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKS 63
           T    + + ATLA GG+ P+T ++V+ +++V  +L+ M   G+Y+ SG +A+ VGLP KS
Sbjct: 204 TARDLATMGATLAAGGVNPLTGKRVVDADNVPYILAEMTMEGLYERSGDWAYTVGLPGKS 263

Query: 64  GVSGSMLVVVPNTMGIALF 82
           GV G +L VVP  MGIA F
Sbjct: 264 GVGGGILAVVPGKMGIAAF 282

Length = 319

>gnl|CDD|237074 PRK12357, PRK12357, glutaminase; Reviewed

 Score = 82.5 bits (204), Expect = 2e-20
 Identities = 36/74 (48%), Positives = 50/74 (67%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           +E T E  ++I   LA+ G  PI +E+V+  E  R   +LM +CGMY+ SG+FA  VGLP
Sbjct: 206 IEVTTEDIALIGLILAHDGYHPIRKEQVIPKEVARLTKALMLTCGMYNASGKFAAFVGLP 265

Query: 61  AKSGVSGSMLVVVP 74
           AKSGVSG ++ +VP
Sbjct: 266 AKSGVSGGIMTLVP 279

Length = 326

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
PRK00971	307	glutaminase; Provisional	100.0
PRK12356	319	glutaminase; Reviewed	100.0
TIGR03814	300	Gln_ase glutaminase A. This family describes the e	100.0
PF04960	286	Glutaminase: Glutaminase; InterPro: IPR015868 Glut	100.0
PRK12357	326	glutaminase; Reviewed	100.0
COG2066	309	GlsA Glutaminase [Amino acid transport and metabol	100.0
KOG0506|consensus	622		100.0
TIGR02074	530	PBP_1a_fam penicillin-binding protein, 1A family.	95.39
PRK15105	578	peptidoglycan synthase FtsI; Provisional	94.97
PRK11240	772	penicillin-binding protein 1C; Provisional	94.41
PF00905	304	Transpeptidase: Penicillin binding protein transpe	94.32
TIGR03423	592	pbp2_mrdA penicillin-binding protein 2. Members of	94.14
COG0768	599	FtsI Cell division protein FtsI/penicillin-binding	92.35
TIGR02073	727	PBP_1c penicillin-binding protein 1C. This subfami	92.33
TIGR02214	636	spoVD_pbp stage V sporulation protein D. This mode	91.57
TIGR02071	730	PBP_1b penicillin-binding protein 1B. Bacterial th	88.76
COG4953	733	PbpC Membrane carboxypeptidase/penicillin-binding	87.99
PRK14850	764	penicillin-binding protein 1b; Provisional	86.68
PRK03642	432	putative periplasmic esterase; Provisional	80.46

>PRK00971 glutaminase; Provisional

Probab=100.00  E-value=8.5e-51  Score=325.64  Aligned_cols=97  Identities=43%  Similarity=0.732  Sum_probs=95.2

Q ss_pred             CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceeeecceeeccCCceEEEEecCceEEE
Q psy8041           1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIA   80 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKSGVsGgIlavvPg~~gIa   80 (101)
                      |+|||+|||+||++|||+|+||+|+||+++++++|+|+|+|+||||||+||+|||+||+|+|||||||||+|+||++|||
T Consensus       197 i~vt~~dLA~~~a~LAn~G~~P~tg~~vl~~~~~r~v~s~M~TcGmYD~SG~fa~~VGlPaKSGVgGgIlavvPg~~gIa  276 (307)
T PRK00971        197 LEMSCVDLARAGLFLANGGVSPHTGERVVSPRQARQVNALMLTCGMYDASGEFAYRVGLPAKSGVGGGILAVVPGEMAIA  276 (307)
T ss_pred             cceeHHHHHHHHHHHHcCCcCCCCCCeecCHHHHHHHHHHHHHcCCccchHHHHHHcCCccccCCcceEEEEeCCCcEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCccccccceee
Q psy8041          81 LFFRTTQNVFVLFVGHR   97 (101)
Q Consensus        81 v~SP~LD~~gn~~~~~~   97 (101)
                      ||||+||++|||.+|-+
T Consensus       277 v~SP~LD~~GNSv~G~~  293 (307)
T PRK00971        277 VWSPELDAKGNSLAGTA  293 (307)
T ss_pred             EECCCcCCCCCCHHHHH
Confidence            99999999999999854

>PRK12356 glutaminase; Reviewed

Probab=100.00  E-value=1.2e-50  Score=326.27  Aligned_cols=97  Identities=38%  Similarity=0.643  Sum_probs=95.2

Q ss_pred             CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceeeecceeeccCCceEEEEecCceEEE
Q psy8041           1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIA   80 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKSGVsGgIlavvPg~~gIa   80 (101)
                      |+|||+|||+||++|||+|+||+|||++++++++|+|+|+|+||||||+||+|||+||+|+|||||||||+|+||++|||
T Consensus       201 i~vt~~dLA~~~a~LAn~G~~P~tg~~vl~~~~~r~v~s~M~TCGmYd~SG~fa~~VGlPaKSGVgGgIlavvPg~~gIa  280 (319)
T PRK12356        201 TLVTARDLATMGATLAAGGVNPLTGKRVVDADNVPYILAEMTMEGLYERSGDWAYTVGLPGKSGVGGGILAVVPGKMGIA  280 (319)
T ss_pred             cceeHHHHHHHHHHHHcCCcCCCCCCeecCHHHHHHHHHHHHHcCCccchhhHHHHhCCccccCccceeEEEeCCceEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCccccccceee
Q psy8041          81 LFFRTTQNVFVLFVGHR   97 (101)
Q Consensus        81 v~SP~LD~~gn~~~~~~   97 (101)
                      ||||+||++|||.+|-+
T Consensus       281 v~SP~LD~~GNSv~G~~  297 (319)
T PRK12356        281 AFSPPLDSAGNSVRGQK  297 (319)
T ss_pred             EECCCcCCCCCcHHHHH
Confidence            99999999999999854

>TIGR03814 Gln_ase glutaminase A

Probab=100.00  E-value=1.3e-50  Score=323.82  Aligned_cols=97  Identities=45%  Similarity=0.806  Sum_probs=95.4

Q ss_pred             CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceeeecceeeccCCceEEEEecCceEEE
Q psy8041           1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIA   80 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKSGVsGgIlavvPg~~gIa   80 (101)
                      |+|||+|||+||++|||+|+||+|+||+++++++|+|+++|+||||||+||+|||+||+|+|||||||||+|+||++|||
T Consensus       190 i~vt~~dLA~~~a~LAn~G~~P~tg~~v~s~~~~r~v~s~M~TcGmYd~SG~fa~~VGlPaKSGVgGgIlavvPg~~gIa  269 (300)
T TIGR03814       190 IEMTCKDLARAGLFLANGGVNPLTGEQVISAEVARRINALMLTCGLYDASGEFAYRVGLPAKSGVGGGILAVVPGKMGIA  269 (300)
T ss_pred             cceeHHHHHHHHHHHHcCCcCCCCCCeecCHHHHHHHHHHHHHcCCccchhhHHHHcCCccccCccceEEEEeCCceEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCccccccceee
Q psy8041          81 LFFRTTQNVFVLFVGHR   97 (101)
Q Consensus        81 v~SP~LD~~gn~~~~~~   97 (101)
                      ||||+||++|||.+|-+
T Consensus       270 v~SP~LD~~GNSv~G~~  286 (300)
T TIGR03814       270 VFSPALDAAGNSVAGQK  286 (300)
T ss_pred             EECCCcCCCCCCHHHHH
Confidence            99999999999999964

This family describes the enzyme glutaminase, from a larger family that includes serine-dependent beta-lactamases and penicillin-binding proteins. Many bacteria have two isozymes. This model is based on selected known glutaminases and their homologs within prokaryotes, with the exclusion of highly-derived (long branch) and architecturally varied homologs, so as to achieve conservative assignments. A sharp drop in scores occurs below 250, and cutoffs are set accordingly. The enzyme converts glutamine to glutamate, with the release of ammonia. Members tend to be described as glutaminase A (glsA), where B (glsB) is unknown and may not be homologous (as in Rhizobium etli). Some species have two isozymes that may both be designated A (GlsA1 and GlsA2).

>PF04960 Glutaminase: Glutaminase; InterPro: IPR015868 Glutaminases (3

Probab=100.00  E-value=5.7e-50  Score=318.14  Aligned_cols=97  Identities=57%  Similarity=0.928  Sum_probs=89.2

Q ss_pred             CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceeeecceeeccCCceEEEEecCceEEE
Q psy8041           1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIA   80 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKSGVsGgIlavvPg~~gIa   80 (101)
                      |+|||+|||+||++|||+|+||+|+||+++++++|+++++|+||||||+||+|||+||+|+|||||||||+||||+||||
T Consensus       176 i~v~~~dLA~~~a~LAn~G~~P~t~~~v~~~~~~r~v~slM~tcGmYd~SG~fa~~vGlPaKSGVgGgilavvPg~~gIa  255 (286)
T PF04960_consen  176 IEVTCEDLARMAATLANGGVNPITGERVLSPEHVRRVLSLMLTCGMYDYSGEFAYRVGLPAKSGVGGGILAVVPGRMGIA  255 (286)
T ss_dssp             EEEEHHHHHHHHHHHHTTTBETTTTEBSS-HHHHHHHHHHHHHHTTGGGHHHHHHHT-S-EEE-TTSEEEEEETTTEEEE
T ss_pred             hHeeHHHHHHHHHHHhcCCCcCCCCCEecCHHHHHHHHHHHHhcCCCcchHHHHHHcCCccccCCCceEEEEeCCCcEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCccccccceee
Q psy8041          81 LFFRTTQNVFVLFVGHR   97 (101)
Q Consensus        81 v~SP~LD~~gn~~~~~~   97 (101)
                      +|||+||++|||.+|-+
T Consensus       256 v~SP~LD~~GNSv~G~~  272 (286)
T PF04960_consen  256 VYSPPLDEKGNSVRGMK  272 (286)
T ss_dssp             EE-SEB-TTSSBHHHHH
T ss_pred             EECCCCCCCCCcHHHHH
Confidence            99999999999999864

5.1.2 from EC) deaminate glutamine to glutamate. In Bacillus subtilis, glutaminase is encoded by glnA, which is part of an operon, glnA-glnT (formerly ybgJ-ybgH), where glnT encodes a glutamine transporter. The glnA-glnT operon is regulated by the 2-component system GlnK-GlnL in response to glutamine []. This entry represents the core structural motif of a family of glutaminases that include GlnA, which are characterised by their beta-lactamase-like topology, containing a cluster of alpha-helices and an alpha/beta sandwich. This family describes the enzyme glutaminase, from a larger family that includes serine-dependent beta-lactamases and penicillin-binding proteins. Many bacteria have two isozymes. This model is based on selected known glutaminases and their homologs within prokaryotes, with the exclusion of highly-derived (long branch) and architecturally varied homologs, so as to achieve conservative assignments. A sharp drop in scores occurs below 250, and cutoffs are set accordingly. The enzyme converts glutamine to glutamate, with the release of ammonia. Members tend to be described as glutaminase A (glsA), where B (glsB) is unknown and may not be homologous (as in Rhizobium etli. Some species have two isozymes that may both be designated A (GlsA1 and GlsA2). ; GO: 0004359 glutaminase activity, 0006541 glutamine metabolic process; PDB: 2OSU_B 3BRM_A 3AGF_B 1MKI_B 2PBY_C 3SS5_D 3SS3_A 3SS4_C 3UO9_C 3UNW_C ....

>PRK12357 glutaminase; Reviewed

Probab=100.00  E-value=8.3e-49  Score=316.53  Aligned_cols=97  Identities=40%  Similarity=0.628  Sum_probs=94.8

Q ss_pred             CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceeeecceeeccCCceEEEEec------
Q psy8041           1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVP------   74 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKSGVsGgIlavvP------   74 (101)
                      |+|||+|||+||++|||+|+||+||||+++++++|+++|+|+||||||+||+|||+||+|+|||||||||+|||      
T Consensus       206 i~vt~~dLA~~ga~LAn~Gv~P~tg~~vls~~~~r~v~a~M~tcGmYd~SG~fa~~VGlPaKSGVgGGIlavvPg~~~~~  285 (326)
T PRK12357        206 IEVTTEDIALIGLILAHDGYHPIRKEQVIPKEVARLTKALMLTCGMYNASGKFAAFVGLPAKSGVSGGIMTLVPPKSRKD  285 (326)
T ss_pred             cceeHHHHHHHHHHHhCCCcCCCCCCEecCHHHHHHHHHHHHhcCCccchhhHHHHhCCccccCcCceeEEEecCccccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999      


Q ss_pred             ----CceEEEEEcCCCCccccccceee
Q psy8041          75 ----NTMGIALFFRTTQNVFVLFVGHR   97 (101)
Q Consensus        75 ----g~~gIav~SP~LD~~gn~~~~~~   97 (101)
                          |++|||+|||+||++|||.+|-+
T Consensus       286 ~~~~g~~gIav~SP~LD~~GNSv~G~~  312 (326)
T PRK12357        286 LPFQDGCGIGIYGPAIDEYGNSLPGIM  312 (326)
T ss_pred             ccccCceEEEEECCCcCCCCCcHHHHH
Confidence                78999999999999999999854

>COG2066 GlsA Glutaminase [Amino acid transport and metabolism]

Probab=100.00  E-value=4.8e-48  Score=310.12  Aligned_cols=97  Identities=42%  Similarity=0.774  Sum_probs=94.9

Q ss_pred             CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceeeecceeeccCCceEEEEecCceEEE
Q psy8041           1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIA   80 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKSGVsGgIlavvPg~~gIa   80 (101)
                      |+|||+|||+++++|||+|+||.|+|++++++++|+++|+|+||||||.|||||||||+|+||||||||||||||+||||
T Consensus       199 i~~~~~dLA~~g~~LA~~G~~p~tge~v~~~~~ar~i~a~M~TcGmYd~sG~fa~rVGlP~KSGVgGGI~AvvPg~~gIa  278 (309)
T COG2066         199 IEMNCVDLARLGLFLANGGVNPLTGERVVPADQARQINALMLTCGMYDASGEFAYRVGLPAKSGVGGGIMAVVPGEMGIA  278 (309)
T ss_pred             HHhhHHHHHHHHHHHhcCCcCCCCCCcCCCHHHHHHHHHHHHHccccccchhhHhhcCCccccCcccceEEEccCCcEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCccccccceee
Q psy8041          81 LFFRTTQNVFVLFVGHR   97 (101)
Q Consensus        81 v~SP~LD~~gn~~~~~~   97 (101)
                      ||||+||++|||+.|-.
T Consensus       279 v~sP~Ld~~GNSv~G~~  295 (309)
T COG2066         279 VWSPALDEAGNSVAGIA  295 (309)
T ss_pred             EECCccCcCCCchHHHH
Confidence            99999999999998853

>KOG0506|consensus

Probab=100.00  E-value=1.4e-43  Score=299.59  Aligned_cols=96  Identities=64%  Similarity=1.002  Sum_probs=94.6

Q ss_pred             CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceeeecceeeccCCceEEEEecCceEEE
Q psy8041           1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIA   80 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKSGVsGgIlavvPg~~gIa   80 (101)
                      ||+||+.+|+|||||||+|+||+|||++++++.+|.++|||.+|||||+||+|||.|||||||||||+|+.|||++|||+
T Consensus       372 iEvtCes~aVMAaTLANGGvcPit~E~~l~~~~cRdtLSLMySCGMYD~SGqFaFhVGLPAKSgVsG~mivVvPNVMGi~  451 (622)
T KOG0506|consen  372 IEVTCESAAVMAATLANGGVCPITGERCLSPRACRDTLSLMYSCGMYDFSGQFAFHVGLPAKSGVSGAMIVVVPNVMGIA  451 (622)
T ss_pred             eeeeccHHHHHHHHHhcCCcCCCCCCcccCcHHHHHHHHHHHhccccccccceEEEecCcccccccccEEEEeccceeee
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCcccccccee
Q psy8041          81 LFFRTTQNVFVLFVGH   96 (101)
Q Consensus        81 v~SP~LD~~gn~~~~~   96 (101)
                      +||||||+-||+-+|-
T Consensus       452 l~SPpLDklGNs~rGv  467 (622)
T KOG0506|consen  452 LYSPPLDKLGNSCRGV  467 (622)
T ss_pred             eccCCchhhcCccccH
Confidence            9999999999999884

>TIGR02074 PBP_1a_fam penicillin-binding protein, 1A family

Probab=95.39  E-value=0.081  Score=45.08  Aligned_cols=81  Identities=20%  Similarity=0.245  Sum_probs=57.8

Q ss_pred             CcccHHHHHHHHHHHhCCCCC--C------------------CCCceeechhhHHHHHHHHHhhccccccccceeeec--
Q psy8041           1 METTCESFSVIAATLANGGIC--P------------------ITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVG--   58 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~--p------------------~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VG--   58 (101)
                      +++|.-|||.+.++|||+|+-  |                  ...+++++++++..+..+|...=- +..|..+..-|  
T Consensus       391 ~~vTplqmA~ayaaiANgG~~~~P~~v~~I~d~~G~~v~~~~~~~~~vis~~~a~~v~~~L~~vv~-~GTg~~a~~~~~~  469 (530)
T TIGR02074       391 VEVSPLEMASAYAVFANGGKYVEPHGIRKIVDRDGKVIYENKPTTTQVISPATAYIMTDMLKGVVE-SGTGRSARLPGRP  469 (530)
T ss_pred             CCCCHHHHHHHHHHHHcCCEEccCEEEEEEECCCCCEEeccCCCCccCCCHHHHHHHHHHHHhhhc-ccchhhcccCCCC
Confidence            368999999999999999962  1                  234678999999999999886532 34444433223  


Q ss_pred             ceeeccCCc-----eEEEEecCceEEEEEc
Q psy8041          59 LPAKSGVSG-----SMLVVVPNTMGIALFF   83 (101)
Q Consensus        59 lPaKSGVsG-----gIlavvPg~~gIav~S   83 (101)
                      +-+|+|.+=     -.++..| +..++||-
T Consensus       470 vaGKTGTa~~~~d~WFvG~~P-~~~v~Vwv  498 (530)
T TIGR02074       470 VAGKTGTTQNSRDAWFVGYTP-YYVTAVWV  498 (530)
T ss_pred             eEEEcccCCCCccEEEEEeCC-CceEEEEE
Confidence            348988863     3677778 56788885

Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages.

>PRK15105 peptidoglycan synthase FtsI; Provisional

Probab=94.97  E-value=0.043  Score=47.23  Aligned_cols=64  Identities=27%  Similarity=0.312  Sum_probs=45.5

Q ss_pred             cccHHHHHHHHHHHhCCCC----------CCCCCceeechhhHHHHHHHHHhhccccccccceee--ecceeeccC
Q psy8041           2 ETTCESFSVIAATLANGGI----------CPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFK--VGLPAKSGV   65 (101)
Q Consensus         2 ~v~~~dLA~~~a~LAn~G~----------~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~--VGlPaKSGV   65 (101)
                      .+|.-|||.+.+++||+|+          .+...++++++++.+.+..+|...=-...+|.-+.-  +-+-+|+|.
T Consensus       421 ~vTPlQma~a~aaiANgG~~~p~~v~~~~~~~~~~~vis~~ta~~v~~~m~~Vv~~~Gt~~~a~~~g~~vaGKTGT  496 (578)
T PRK15105        421 MVTPLQLARVYATIGSYGIYRPLSITKVDPPVPGERVFPESIVRTVVHMMESVALPGGGGVKAAIKGYRIAIKTGT  496 (578)
T ss_pred             hhhHHHHHHHHHHHhcCCeEcCcEEecccCCCCCcccCCHHHHHHHHHHHHhhccCCCcccccCCCCcceECceee
Confidence            5789999999999999997          234567889999999999999876321233433322  223478875

>PRK11240 penicillin-binding protein 1C; Provisional

Probab=94.41  E-value=0.16  Score=45.57  Aligned_cols=81  Identities=16%  Similarity=0.130  Sum_probs=56.9

Q ss_pred             cccHHHHHHHHHHHhCCCC---------CCCCCceeechhhHHHHHHHHHhhccccccccceeeecce--eeccCCce--
Q psy8041           2 ETTCESFSVIAATLANGGI---------CPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP--AKSGVSGS--   68 (101)
Q Consensus         2 ~v~~~dLA~~~a~LAn~G~---------~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlP--aKSGVsGg--   68 (101)
                      ++|..|||.+.++|||+|+         ++...+++++++++..+..+|...--..  +.-+..-|.|  +|+|-+=+  
T Consensus       440 ~vtplela~AYa~~ANgG~~~~p~~~~~~~~~~~~vis~~tA~~~~~~L~~vv~~~--~~a~~~~~~~vAGKTGTS~~~r  517 (772)
T PRK11240        440 GARLEDMVAAYSAFARHGKAAKLRLQPDDPLLERPLMSPGAAWIIRRIMADEAQPL--PDAALPRVVPLAWKTGTSYGYR  517 (772)
T ss_pred             CCcHHHHHHHHHHHHcCCEEeeeEEcCCCccccCCCCCHHHHHHHHHHHHHHHhhh--hhhhccCCCeEEEECccCCCCc
Confidence            6889999999999999997         2334578999999999999998764331  2212211333  89998754  


Q ss_pred             ---EEEEecCceEEEEEcCC
Q psy8041          69 ---MLVVVPNTMGIALFFRT   85 (101)
Q Consensus        69 ---IlavvPg~~gIav~SP~   85 (101)
                         .++.-|. ..++||==.
T Consensus       518 DaWfvG~tP~-yv~~VWvG~  536 (772)
T PRK11240        518 DAWAIGVNAR-YVIGIWTGR  536 (772)
T ss_pred             eEEEEEcCCC-EEEEEEEec
Confidence               5666664 467777543

>PF00905 Transpeptidase: Penicillin binding protein transpeptidase domain; InterPro: IPR001460 This signature identifies a large group of proteins, which include: Beta-lactamase precursor (3

Probab=94.32  E-value=0.041  Score=42.38  Aligned_cols=64  Identities=23%  Similarity=0.322  Sum_probs=45.4

Q ss_pred             CcccHHHHHHHHHHHhCCCCC---------------------CCCCceeechhhHHHHHHHHHhhccccccccceeeecc
Q psy8041           1 METTCESFSVIAATLANGGIC---------------------PITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGL   59 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~---------------------p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGl   59 (101)
                      +.+|..|+|.+.++|||+|+-                     +...+++++++++..+..+|...--.. .+ .+..-+.
T Consensus       162 ~~vtplqma~~~atian~G~~~~p~~i~~i~~~~g~~~~~~~~~~~~~~~s~~~a~~l~~~l~~vv~~g-~~-~~~~~~~  239 (304)
T PF00905_consen  162 VSVTPLQMASAYATIANGGVYVKPHLIKKIEDPNGKVIYFTPKPKKKQVISPETAYILTEMLREVVTEG-TG-RAKIPGY  239 (304)
T ss_dssp             SBBEHHHHHHHHHHHHTTTEEE--BSEEEEEETTSTEEEEESSEEEEESS-HHHHHHHHHHHHHHHHTT-TT-GGHBTTS
T ss_pred             ccccHHHHHHhhhhhhhhccccceEEEeeecccccccccccccccceeeecchhccccccceeeeeecC-cc-cccCCCc
Confidence            468999999999999999752                     122367899999999999998765444 44 4444444


Q ss_pred             e--eeccCC
Q psy8041          60 P--AKSGVS   66 (101)
Q Consensus        60 P--aKSGVs   66 (101)
                      |  +|+|-+
T Consensus       240 ~vaGKTGTa  248 (304)
T PF00905_consen  240 PVAGKTGTA  248 (304)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEeee
Confidence            4  777653

5.2.6 from EC, penicillinase) Peptidoglycan synthetase ftsI (2.4.1.129 from EC, peptidoglycan glycosyltransferase 3) Methicillin resistance mecR1 protein Methicillin resistance blaR1 protein The large number of penicillin binding proteins, which are represented in this group of sequences, are responsible for the final stages of peptidoglycan biosynthesis for cell wall formation. The proteins synthesise cross-linked peptidoglycan from lipid intermediates, and contain a penicillin-sensitive transpeptidase carboxy-terminal domain. The active site serine (residue 337 in P14677 from SWISSPROT) is conserved in all members of this family []. MecR1 and BlaR1 are metallopeptidases belonging to MEROPS peptidase family M56, clan M-. BlaR1 and MecR1 cleave their cognate transcriptional repressors BlaI and MecI, respectively, activating the synthesis of MecA. MecR1 is present in Staphylococcus aureus and Staphylococcus sciuri, whereas BlaR1 (also known as BlaR, PenR1, or PenJ) has been found in Bacillus licheniformis, Staphylococcus epidermidis, Staphylococcus haemolyticus, and several S. aureus strains. These proteins are either plasmid-encoded, chromosomal, or transposon-mediated. MecR1/BlaR1 proteins are made up by homologous N-terminal 330-residue transmembrane metallopeptidase domains linked to extracellular 260-residue homologous PBP-like penicillin sensor moieties. ; GO: 0008658 penicillin binding, 0009273 peptidoglycan-based cell wall biogenesis; PDB: 3FWL_A 3VMA_A 2Z2M_E 2Z2L_E 1QME_A 1RP5_B 2ZC4_E 2ZC3_E 1QMF_A 3HBR_A ....

>TIGR03423 pbp2_mrdA penicillin-binding protein 2

Probab=94.14  E-value=0.24  Score=42.44  Aligned_cols=66  Identities=21%  Similarity=0.107  Sum_probs=45.3

Q ss_pred             CcccHHHHHHHHHHHhCCCCCC---------------------C-CCceeechhhHHHHHHHHHhhccc-cccccceee-
Q psy8041           1 METTCESFSVIAATLANGGICP---------------------I-TEEKVLRSESVRDVLSLMHSCGMY-DYSGQFAFK-   56 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~p---------------------~-tge~vl~~~~~r~v~alM~tcGmY-d~SG~fa~~-   56 (101)
                      +++|.-|||.+.++|||+|+-.                     . ..++++++++++.+..+|...=-+ +..|..++- 
T Consensus       434 ~~vTplqma~ayaaiAN~G~~~~P~~V~~i~~~~g~~v~~~~~~~~~~~vis~~~a~~v~~~m~~vv~~~~GTg~~a~~~  513 (592)
T TIGR03423       434 VLVTPLQLAVATAALANGGKLYKPHLVKSIEDPDGGVVQETEPEVLRPLPISPENLDVVREGMRDVVNEPGGTARRARLG  513 (592)
T ss_pred             chhhHHHHHHHHHHHHcCCcEeeeEEEEEeecCCCceeeccCCcccccCCCCHHHHHHHHHHHHHHhcCCCCceehhccC
Confidence            3689999999999999999622                     1 125689999999999999864211 245555432 


Q ss_pred             ecc--eeeccCC
Q psy8041          57 VGL--PAKSGVS   66 (101)
Q Consensus        57 VGl--PaKSGVs   66 (101)
                      .|.  -+|+|..
T Consensus       514 ~g~~vaGKTGTa  525 (592)
T TIGR03423       514 LPYKMAGKTGTA  525 (592)
T ss_pred             CCCeEEEEeecc
Confidence            233  3788743

Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape).

>COG0768 FtsI Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]

Probab=92.35  E-value=0.3  Score=42.11  Aligned_cols=65  Identities=26%  Similarity=0.291  Sum_probs=46.7

Q ss_pred             CcccHHHHHHHHHHHhCCCC-----------CC---------CCCceeechhhHHHHHHHHHhhcccc--ccccceeeec
Q psy8041           1 METTCESFSVIAATLANGGI-----------CP---------ITEEKVLRSESVRDVLSLMHSCGMYD--YSGQFAFKVG   58 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~-----------~p---------~tge~vl~~~~~r~v~alM~tcGmYd--~SG~fa~~VG   58 (101)
                      +.+|.-|||++.++|||+|+           +|         ...++++++++++.+...|...=-..  .+|.++.--|
T Consensus       440 ~~vTPlQla~a~a~iaN~G~~~~P~lv~~~~~~~~~~~~~~~~~~~~~is~~~~~~v~~~m~~Vv~~~~gg~~~~a~v~g  519 (599)
T COG0768         440 LLVTPLQLAQAYATIANGGKLVKPHLVKGIEDPVGENKKEPPVLKKRVISPETAEKVREGMRAVVNDGGGGTGKAAAVPG  519 (599)
T ss_pred             hhhhHHHHHHHHHHHHcCCEEeccEEEeeccCccccccccccccccccCCHHHHHHHHHHHHHHccCCCCCcceecccCC
Confidence            46899999999999999995           11         13667899999999999998875444  3445554233


Q ss_pred             ce--eeccC
Q psy8041          59 LP--AKSGV   65 (101)
Q Consensus        59 lP--aKSGV   65 (101)
                      .+  +|+|-
T Consensus       520 ~~iaGKTGT  528 (599)
T COG0768         520 YRIAGKTGT  528 (599)
T ss_pred             ceeeecccc
Confidence            33  67764

>TIGR02073 PBP_1c penicillin-binding protein 1C

Probab=92.33  E-value=0.35  Score=42.98  Aligned_cols=86  Identities=22%  Similarity=0.180  Sum_probs=57.3

Q ss_pred             CcccHHHHHHHHHHHhCCCCC--CC---------CCceeechhhHHHHHHHHHhhccccc-cccceeeecc--eeeccCC
Q psy8041           1 METTCESFSVIAATLANGGIC--PI---------TEEKVLRSESVRDVLSLMHSCGMYDY-SGQFAFKVGL--PAKSGVS   66 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~--p~---------tge~vl~~~~~r~v~alM~tcGmYd~-SG~fa~~VGl--PaKSGVs   66 (101)
                      .++|..|||.+.++|||+|+-  |.         ..+++++++++..+..+|...=-... .+.-+..-|.  =+|+|.+
T Consensus       415 ~~vTplqla~aYaa~ANgG~~~~P~~i~~~~~~~~~~~vis~~tA~~v~~~L~~vv~~g~t~~~~~~~~~~~vAGKTGTs  494 (727)
T TIGR02073       415 AEITLQDLANLYAMLANQGLSGPLRFLQTDAKRPERERLLSPGAAWIVLDILKDRPRPDDTLPLSALPTRLPLAWKTGTS  494 (727)
T ss_pred             CCCCHHHHHHHHHHHHcCCEEcCCEEEecccCCCCCCcCCCHHHHHHHHHHHHhhcccCCcchhhhccCCCceEEECcCC
Confidence            368999999999999999962  11         23489999999999999987633221 1111111133  3899987


Q ss_pred             ce-----EEEEecCceEEEEEcCCCC
Q psy8041          67 GS-----MLVVVPNTMGIALFFRTTQ   87 (101)
Q Consensus        67 Gg-----IlavvPg~~gIav~SP~LD   87 (101)
                      =+     .++.-| +..++||----|
T Consensus       495 ~~~~daWfvG~tp-~y~v~VwvG~~d  519 (727)
T TIGR02073       495 YGFRDAWAAGVSG-RYTIGVWVGNFD  519 (727)
T ss_pred             CCCcceEEEEecC-CEEEEEEEecCC
Confidence            43     466665 457888865433

This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function.

>TIGR02214 spoVD_pbp stage V sporulation protein D

Probab=91.57  E-value=0.34  Score=41.87  Aligned_cols=64  Identities=23%  Similarity=0.309  Sum_probs=43.9

Q ss_pred             cccHHHHHHHHHHHhCCCC--CCC--------------------CCceeechhhHHHHHHHHHhhccccccccceeeec-
Q psy8041           2 ETTCESFSVIAATLANGGI--CPI--------------------TEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVG-   58 (101)
Q Consensus         2 ~v~~~dLA~~~a~LAn~G~--~p~--------------------tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VG-   58 (101)
                      .+|.-|||.+.+++||+|+  .|.                    ..++++++++++.+..+|...= -+.+|..+.--| 
T Consensus       407 ~vTPlqma~~~aaiAN~G~~~~P~lv~~i~~~~g~~~~~~~~~~~~~~~~s~~~a~~v~~~m~~vv-~~GT~~~a~~~g~  485 (636)
T TIGR02214       407 TVTPIQLMTAVNAVANGGKLIQPHIMKEISDSQNNAVDQTFEPEVKRQVVSKETTQKLRLALETVV-SKGSGKNAFIEGY  485 (636)
T ss_pred             ccCHHHHHHHHHHHhcCCEEeccEEEEEEEcCCCceeeeccCCccccCCCCHHHHHHHHHHHHHHh-hCCccccccCCCc
Confidence            5899999999999999995  221                    1246789999999999997652 134444333223 


Q ss_pred             -ceeeccCC
Q psy8041          59 -LPAKSGVS   66 (101)
Q Consensus        59 -lPaKSGVs   66 (101)
                       +-+|+|..
T Consensus       486 ~vaGKTGTA  494 (636)
T TIGR02214       486 RVGGKTGTA  494 (636)
T ss_pred             eEEeeeeEe
Confidence             33788853

This model describes the spoVD subfamily of homologs of the cell division protein FtsI, a penicillin binding protein. This subfamily is restricted to Bacillus subtilis and related Gram-positive species with known or suspected endospore formation capability. In these species, the functional equivalent of FtsI is desginated PBP-2B, a paralog of spoVD.

>TIGR02071 PBP_1b penicillin-binding protein 1B

Probab=88.76  E-value=0.94  Score=40.47  Aligned_cols=81  Identities=15%  Similarity=0.112  Sum_probs=54.0

Q ss_pred             CcccHHHHHHHHHHHhCCCCC--C------------------CCCceeechhhHHHHHHHHHhhcccccccccee-ee-c
Q psy8041           1 METTCESFSVIAATLANGGIC--P------------------ITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAF-KV-G   58 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~--p------------------~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~-~V-G   58 (101)
                      +++|.-|+|.+.++|||+|+-  |                  ...+++++++++..+..+|... +-+.+|..+. .. +
T Consensus       546 ~~vTPlqmA~aYatiANgG~~~~p~~I~~I~d~~G~~v~~~~~~~~~vis~~~a~~v~~~L~~V-V~~GTg~~~~~~~~~  624 (730)
T TIGR02071       546 INLTPYEVAQLYQTIASGGNRAPLSAVRSVLDEDGKVLYQSDPQAEQAVPSQAAYLTLYAMQQV-VQRGTARSLGADFPS  624 (730)
T ss_pred             CCCCHHHHHHHHHHHHCCCEEccCEEEEEEECCCCCEEeecCCCcccCCCHHHHHHHHHHHHHh-hhcccchhhhhcCCC
Confidence            468999999999999999962  2                  1235788999999988888754 2234444332 11 3


Q ss_pred             --ceeeccCCc-----eEEEEecCceEEEEEc
Q psy8041          59 --LPAKSGVSG-----SMLVVVPNTMGIALFF   83 (101)
Q Consensus        59 --lPaKSGVsG-----gIlavvPg~~gIav~S   83 (101)
                        +-+|+|.+=     -.++.-|. .-.+||-
T Consensus       625 ~~vAGKTGTt~~~~DaWFvG~tp~-~~~~VWv  655 (730)
T TIGR02071       625 LSLAGKTGTTNDNRDSWFAGIDGK-EVTIIWL  655 (730)
T ss_pred             CeeEEEcccCCCCccEEEEEecCC-eEEEEEE
Confidence              348999752     25666654 3556665

Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B.

>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]

Probab=87.99  E-value=3.1  Score=37.92  Aligned_cols=85  Identities=21%  Similarity=0.227  Sum_probs=59.3

Q ss_pred             cccHHHHHHHHHHHhCCCC----------CCCCCceeechhhHHHHHHHHHh---hccccccccceeeecceeeccCCce
Q psy8041           2 ETTCESFSVIAATLANGGI----------CPITEEKVLRSESVRDVLSLMHS---CGMYDYSGQFAFKVGLPAKSGVSGS   68 (101)
Q Consensus         2 ~v~~~dLA~~~a~LAn~G~----------~p~tge~vl~~~~~r~v~alM~t---cGmYd~SG~fa~~VGlPaKSGVsGg   68 (101)
                      ++|-+|||.+-+.|||+|+          +|.++++++|++.+-+++.+|..   -|+++.+=+-+  .++-=|.|.|=|
T Consensus       437 gi~L~dLa~lYa~lAn~G~~~~L~~~~~~~~~~~~~l~s~~Aaw~i~dIl~~~~~P~~~~~~~~~~--~piawKTGTSyG  514 (733)
T COG4953         437 GITLEDLAQLYAALANQGKAGPLRDTLDDDPLTERTLLSPGAAWQILDILSDVARPGLPNGALPSV--RPIAWKTGTSYG  514 (733)
T ss_pred             cccHHHHHHHHHHHhcCCceecccccCCCCCCCCccccCcchHHHHHHHHhccCCCCcccCCcccc--cceeEeccCccc
Confidence            6889999999999999997          78889999999999998888865   46666655532  344456665544


Q ss_pred             E----EEEecCceEEEEEcCCCCc
Q psy8041          69 M----LVVVPNTMGIALFFRTTQN   88 (101)
Q Consensus        69 I----lavvPg~~gIav~SP~LD~   88 (101)
                      .    -+=+-|++-|+||-=..|.
T Consensus       515 yRDAWsvG~~g~Y~l~VWvGr~dg  538 (733)
T COG4953         515 YRDAWSVGVFGRYVLGVWVGRFDG  538 (733)
T ss_pred             cccceeecccCceEEEEEEeCCCC
Confidence            1    1123445566666544443

>PRK14850 penicillin-binding protein 1b; Provisional

Probab=86.68  E-value=1.2  Score=40.20  Aligned_cols=81  Identities=12%  Similarity=0.101  Sum_probs=53.1

Q ss_pred             CcccHHHHHHHHHHHhCCCCC--C------------------CCCceeechhhHHHHHHHHHhhcccccccccee----e
Q psy8041           1 METTCESFSVIAATLANGGIC--P------------------ITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAF----K   56 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~--p------------------~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~----~   56 (101)
                      +++|.-|||.+.++|||+|+-  |                  ...+++++++++..+...|... +-+..|..+.    .
T Consensus       556 ~~vTPlqmA~aYatiANgG~~~~p~~I~~V~d~~G~vi~~~~~~~~~vis~~tA~~v~~~M~~V-V~~GTg~~~~~~~~~  634 (764)
T PRK14850        556 INLTPMEVAQVFQIIGSGGYKSSLSSIRSIISDDNKVLYQNFPQSKHVESSQASYLTLYAMQQV-VKSGTAKSLGTIFKE  634 (764)
T ss_pred             CCCCHHHHHHHHHHHhcCCeEeccEEEEEEECCCCcEEeccCCCCCCCCCHHHHHHHHHHHHhh-hhccchhhhhhcCCC
Confidence            468999999999999999972  1                  2346789999999998888755 2233444321    1


Q ss_pred             ecceeeccCC-----ceEEEEecCceEEEEEc
Q psy8041          57 VGLPAKSGVS-----GSMLVVVPNTMGIALFF   83 (101)
Q Consensus        57 VGlPaKSGVs-----GgIlavvPg~~gIav~S   83 (101)
                      .-+-+|+|-+     .=.++.-|.. -+++|-
T Consensus       635 ~~vAGKTGTt~~~rDaWFvG~t~~~-v~~VWv  665 (764)
T PRK14850        635 FSLAGKTGTTNNLVDSWFVGIDGKQ-VVITWI  665 (764)
T ss_pred             CeEEEECccCCCCcCEEEEEecCCE-EEEEEE
Confidence            2234898875     2355555544 444554

>PRK03642 putative periplasmic esterase; Provisional

Probab=80.46  E-value=7.4  Score=32.16  Aligned_cols=34  Identities=18%  Similarity=0.333  Sum_probs=28.7

Q ss_pred             ccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHH
Q psy8041           3 TTCESFSVIAATLANGGICPITEEKVLRSESVRDVL   38 (101)
Q Consensus         3 v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~   38 (101)
                      .|++|+|+++..|.|+|.-  .++++|+++.++...
T Consensus       302 sTa~Dlakf~~~lL~~G~~--~g~~lls~~~v~~~~  335 (432)
T PRK03642        302 SNTGDMAVLMQVMLNGGGY--GNVQLFDAETVKMFT  335 (432)
T ss_pred             cCHHHHHHHHHHHHhcCCc--CCccccCHHHHHHHh
Confidence            5899999999999999863  578999999887543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	101
3ss3_A	479	Crystal Structure Of Mouse Glutaminase C, Ligand-Fr		2e-30
3unw_A	534	Crystal Structure Of Human Gac In Complex With Glut		2e-30
3vp4_A	316	Crystal Structure Of Human Glutaminase In Complex W		2e-30
3czd_A	315	Crystal Structure Of Human Glutaminase In Complex W		3e-30
1u60_A	310	Mcsg Apc5046 Probable Glutaminase Ybas Length = 310		1e-15
3if5_A	456	Crystal Structure Analysis Of Mglu Length = 456		2e-15
3agf_A	327	Crystal Structure Of Bacillus Glutaminase In The Pr		2e-13
2pby_A	308	Probable Glutaminase From Geobacillus Kaustophilus		7e-13
1mki_A	330	Crystal Structure Of Bacillus Subtilis Probable Glu		1e-10
2osu_A	330	Probable Glutaminase From Bacillus Subtilis Complex		1e-10

>pdb|3SS3|A Chain A, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form Length = 479

Iteration: 1
 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 69/79 (87%)
Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           +E TCES SV+AATLANGG CPIT E+VL  E+VR+ LSLMHSCGMYD+SGQFAF VGLP
Sbjct: 301 IEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLP 360
Query: 61  AKSGVSGSMLVVVPNTMGI 79
           AKSGV+G +L+VVPN MG+
Sbjct: 361 AKSGVAGGILLVVPNVMGM 379

>pdb|3UNW|A Chain A, Crystal Structure Of Human Gac In Complex With Glutamate Length = 534

Iteration: 1
 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 69/79 (87%)
Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           +E TCES SV+AATLANGG CPIT E+VL  E+VR+ LSLMHSCGMYD+SGQFAF VGLP
Sbjct: 350 IEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLP 409
Query: 61  AKSGVSGSMLVVVPNTMGI 79
           AKSGV+G +L+VVPN MG+
Sbjct: 410 AKSGVAGGILLVVPNVMGM 428

>pdb|3VP4|A Chain A, Crystal Structure Of Human Glutaminase In Complex With Inhibitor 4 Length = 316

Iteration: 1
 Score =  126 bits (317), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 69/79 (87%)
Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           +E TCES SV+AATLANGG CPIT E+VL  E+VR+ LSLMHSCGMYD+SGQFAF VGLP
Sbjct: 203 IEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLP 262
Query: 61  AKSGVSGSMLVVVPNTMGI 79
           AKSGV+G +L+VVPN MG+
Sbjct: 263 AKSGVAGGILLVVPNVMGM 281

>pdb|3CZD|A Chain A, Crystal Structure Of Human Glutaminase In Complex With L-Glutamate Length = 315

Iteration: 1
 Score =  126 bits (317), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 69/79 (87%)
Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           +E TCES SV+AATLANGG CPIT E+VL  E+VR+ LSLMHSCGMYD+SGQFAF VGLP
Sbjct: 202 IEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLP 261
Query: 61  AKSGVSGSMLVVVPNTMGI 79
           AKSGV+G +L+VVPN MG+
Sbjct: 262 AKSGVAGGILLVVPNVMGM 280

>pdb|1U60|A Chain A, Mcsg Apc5046 Probable Glutaminase Ybas Length = 310

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/75 (48%), Positives = 53/75 (70%)
Query: 8   FSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSG 67
            + + ATLA GG+ P+T ++VL++++V  +L+ M   G+Y  SG +A++VGLP KSGV G
Sbjct: 205 LATLGATLAAGGVNPLTHKRVLQADNVPYILAEMMMEGLYGRSGDWAYRVGLPGKSGVGG 264
Query: 68  SMLVVVPNTMGIALF 82
            +L VVP  MGIA F
Sbjct: 265 GILAVVPGVMGIAAF 279

>pdb|3IF5|A Chain A, Crystal Structure Analysis Of Mglu Length = 456

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/79 (48%), Positives = 54/79 (68%)
Query: 4   TCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKS 63
           T +  +V+ A LA GGI P+T E++L S   R V+S+M S GMYD +GQ+   VG+PAKS
Sbjct: 200 TVKDLAVMGACLATGGIHPMTGERMLPSIVARRVVSVMTSSGMYDAAGQWLADVGIPAKS 259
Query: 64  GVSGSMLVVVPNTMGIALF 82
           GV+G +L  +P  +GI +F
Sbjct: 260 GVAGGVLGALPGRVGIGVF 278

>pdb|3AGF|A Chain A, Crystal Structure Of Bacillus Glutaminase In The Presence Of 4.3m Nacl Length = 327

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           ME+T E  ++I   LA+ G  PI  E+V+  +  +   +LM +CGMY+ SG++A  VG+P
Sbjct: 207 MESTTEDIALIGLILAHDGYHPIRHEQVIPKDVAKLAKALMLTCGMYNASGKYAAFVGVP 266
Query: 61  AKSGVSGSMLVVVP 74
           AKSGVSG ++ +VP
Sbjct: 267 AKSGVSGGIMALVP 280

>pdb|2PBY|A Chain A, Probable Glutaminase From Geobacillus Kaustophilus Hta426 Length = 308

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 49/82 (59%)
Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           +E TC   + I   LA  G  P + E ++  +  R   + M +CGMY+ SG+FA KVG+P
Sbjct: 198 IEMTCIDLARIGLVLALDGRDPHSSEPLMPLDVARICKTFMVTCGMYNSSGEFAIKVGIP 257
Query: 61  AKSGVSGSMLVVVPNTMGIALF 82
           AKSGVSG +L  VP   GI +F
Sbjct: 258 AKSGVSGGILAAVPGRCGIGVF 279

>pdb|1MKI|A Chain A, Crystal Structure Of Bacillus Subtilis Probable Glutaminase, Apc1040 Length = 330

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2   ETTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPA 61
           E+T E  ++I   LA+ G  PI  E+V+  +  +   +L  +CG Y+ SG++A  VG+PA
Sbjct: 211 ESTTEDIALIGLILAHDGYHPIRHEQVIPKDVAKLAKALXLTCGXYNASGKYAAFVGVPA 270
Query: 62  KSGVSGSMLVVVP 74
           KSGVSG +  +VP
Sbjct: 271 KSGVSGGIXALVP 283

>pdb|2OSU|A Chain A, Probable Glutaminase From Bacillus Subtilis Complexed With 6-diazo-5-oxo-l-norleucine Length = 330

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2   ETTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPA 61
           E+T E  ++I   LA+ G  PI  E+V+  +  +   +L  +CG Y+ SG++A  VG+PA
Sbjct: 211 ESTTEDIALIGLILAHDGYHPIRHEQVIPKDVAKLAKALXLTCGXYNASGKYAAFVGVPA 270
Query: 62  KSGVSGSMLVVVP 74
           KSGVSG +  +VP
Sbjct: 271 KSGVSGGIXALVP 283

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	101
3voy_A	315	Glutaminase kidney isoform, mitochondrial; hydrola	7e-31
3uo9_A	534	Glutaminase kidney isoform, mitochondrial; hydrola	1e-30
1u60_A	310	Probable glutaminase YBAS; structural genomics, AP	4e-29
2pby_A	308	Glutaminase; secsg, riken, structural genomics, PS	6e-29
3agd_A	456	Salt-tolerant glutaminase; glutaminase super famil	8e-28
1mki_A	330	Probable glutaminase YBGJ; structural genomics, PS	6e-27

>3voy_A Glutaminase kidney isoform, mitochondrial; hydrolase; 2.20A {Homo sapiens} PDB: 3czd_A 3voz_A* 3vp0_A* 3vp1_A* 3vp2_A 3vp3_A 3vp4_A Length = 315

 Score =  109 bits (274), Expect = 7e-31
 Identities = 59/82 (71%), Positives = 70/82 (85%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           +E TCES SV+AATLANGG CPIT E+VL  E+VR+ LSLMHSCGMYD+SGQFAF VGLP
Sbjct: 202 IEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLP 261

Query: 61  AKSGVSGSMLVVVPNTMGIALF 82
           AKSGV+G +L+VVPN MG+  +
Sbjct: 262 AKSGVAGGILLVVPNVMGMMCW 283

>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB: 3unw_A* 3ss3_A 3ss4_A 3ss5_A* Length = 534

 Score =  112 bits (280), Expect = 1e-30
 Identities = 59/82 (71%), Positives = 70/82 (85%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           +E TCES SV+AATLANGG CPIT E+VL  E+VR+ LSLMHSCGMYD+SGQFAF VGLP
Sbjct: 350 IEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLP 409

Query: 61  AKSGVSGSMLVVVPNTMGIALF 82
           AKSGV+G +L+VVPN MG+  +
Sbjct: 410 AKSGVAGGILLVVPNVMGMMCW 431

>1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI, protein structure initiat midwest center for structural genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2 Length = 310

 Score =  105 bits (262), Expect = 4e-29
 Identities = 36/82 (43%), Positives = 53/82 (64%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
                   + + ATLA GG+ P+T ++VL++++V  +L+ M   G+Y  SG +A++VGLP
Sbjct: 198 TLLNTIELATLGATLAAGGVNPLTHKRVLQADNVPYILAEMMMEGLYGRSGDWAYRVGLP 257

Query: 61  AKSGVSGSMLVVVPNTMGIALF 82
            KSGV G +L VVP  MGIA F
Sbjct: 258 GKSGVGGGILAVVPGVMGIAAF 279

>2pby_A Glutaminase; secsg, riken, structural genomics, PSI, protein structure initiative, riken structural genomics/proteomics initiative, RSGI; 2.07A {Geobacillus kaustophilus} Length = 308

 Score =  104 bits (261), Expect = 6e-29
 Identities = 36/82 (43%), Positives = 49/82 (59%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           +E TC   + I   LA  G  P + E ++  +  R   + M +CGMY+ SG+FA KVG+P
Sbjct: 198 IEMTCIDLARIGLVLALDGRDPHSSEPLMPLDVARICKTFMVTCGMYNSSGEFAIKVGIP 257

Query: 61  AKSGVSGSMLVVVPNTMGIALF 82
           AKSGVSG +L  VP   GI +F
Sbjct: 258 AKSGVSGGILAAVPGRCGIGVF 279

>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase; 2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A Length = 456

 Score =  103 bits (258), Expect = 8e-28
 Identities = 38/82 (46%), Positives = 55/82 (67%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           +  T +  +V+ A LA GGI P+T E++L S   R V+S+M S GMYD +GQ+   VG+P
Sbjct: 197 VLVTVKDLAVMGACLATGGIHPMTGERMLPSIVARRVVSVMTSSGMYDAAGQWLADVGIP 256

Query: 61  AKSGVSGSMLVVVPNTMGIALF 82
           AKSGV+G +L  +P  +GI +F
Sbjct: 257 AKSGVAGGVLGALPGRVGIGVF 278

>1mki_A Probable glutaminase YBGJ; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; HET: SEP; 2.00A {Bacillus subtilis} SCOP: e.3.1.2 PDB: 2osu_A* 3brm_A* 3agf_A Length = 330

 Score = 99.7 bits (248), Expect = 6e-27
 Identities = 34/84 (40%), Positives = 53/84 (63%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           ME+T E  ++I   LA+ G  PI  E+V+  +  +   +LM +CGMY+ SG++A  VG+P
Sbjct: 210 MESTTEDIALIGLILAHDGYHPIRHEQVIPKDVAKLAKALMLTCGMYNASGKYAAFVGVP 269

Query: 61  AKSGVSGSMLVVVPNTMGIALFFR 84
           AKSGVSG ++ +VP +      F+
Sbjct: 270 AKSGVSGGIMALVPPSARREQPFQ 293

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
2pby_A	308	Glutaminase; secsg, riken, structural genomics, PS	100.0
1u60_A	310	Probable glutaminase YBAS; structural genomics, AP	100.0
3voy_A	315	Glutaminase kidney isoform, mitochondrial; hydrola	100.0
1mki_A	330	Probable glutaminase YBGJ; structural genomics, PS	100.0
3agd_A	456	Salt-tolerant glutaminase; glutaminase super famil	100.0
3uo9_A	534	Glutaminase kidney isoform, mitochondrial; hydrola	100.0
3equ_A	542	PBP-2, penicillin-binding protein 2; class B trans	97.03
3pbt_A	538	Penicillin-binding protein 3; PBP3, hydrolase-anti	96.25
3ue3_A	554	Septum formation, penicillin binding protein 3, pe	96.03
2v2f_F	390	Penicillin binding protein 1A; transpeptidase acti	95.59
2olv_A	669	Penicillin-binding protein 2; transpeptidase fold,	94.48
1vqq_A	646	Saupbp2A, penicillin-binding protein MECA, low-aff	94.0
4gb7_A	422	6-aminohexanoate-dimer hydrolase; structural genom	93.16
3un7_A	462	PBPA, penicillin-binding protein A; transpeptidase	92.92
2x02_A	248	Beta-lactamase OXA-10; class D, hydrolase, antibio	92.63
2wuq_A	318	BLAB, beta-lactamase regulatory protein BLAB; clas	92.46
2y2m_A	494	PBP1B, penicillin-binding protein 1B; transferase,	90.17
2jch_A	720	Penicillin-binding protein 1B; peptidoglycan synth	89.24
3fwm_A	751	Penicillin-binding protein 1B; bacterial cell WALL	88.81
1qme_A	702	Penicillin-binding protein 2X; peptidoglycan synth	88.56
3vsk_A	646	Penicillin-binding protein 3; penicillin-binding d	88.52
2wad_A	680	Penicillin-binding protein 2B; peptidoglycan synth	88.16
1ghp_A	258	Beta-lactamase, penicillinase; hydrolase, antibiot	82.93
3lez_A	260	Beta-lactamase; antibiotic resistance, halotoleran	82.91
2dcf_A	392	6-aminohexanoate-dimer hydrolase; HET: ACA MES; 1.	81.37
1alq_A	266	CP254 beta-lactamase; hydrolase, circular permuted	80.69
1nrf_A	262	Regulatory protein BLAR1; penicillin-receptor, bet	80.58
1m40_A	263	TEM-1, beta-lactamase TEM; acylation mechanism, ul	80.28
3udf_A	731	Penicillin-binding protein 1A; transglycosylase, t	80.05

>2pby_A Glutaminase; secsg, riken, structural genomics, PSI, protein structure initiative, riken structural genomics/proteomics initiative, RSGI; 2.07A {Geobacillus kaustophilus}

Probab=100.00  E-value=3.6e-51  Score=326.75  Aligned_cols=97  Identities=38%  Similarity=0.616  Sum_probs=95.1

Q ss_pred             CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceeeecceeeccCCceEEEEecCceEEE
Q psy8041           1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIA   80 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKSGVsGgIlavvPg~~gIa   80 (101)
                      |+|||+|||+|+++|||+|+||+||||+++++++|+++|+|+||||||+||||||+||+|+|||||||||+||||++|||
T Consensus       198 i~vt~~dLA~~~a~LAn~G~~P~tg~~vl~~~~~r~v~a~M~TcGmYd~SG~fa~~VGlPaKSGVgGGIlavvPg~~gIa  277 (308)
T 2pby_A          198 IEMTCIDLARIGLVLALDGRDPHSSEPLMPLDVARICKTFMVTCGMYNSSGEFAIKVGIPAKSGVSGGILAAVPGRCGIG  277 (308)
T ss_dssp             BEECHHHHHHHHHHHHTTTBCTTTCCBSSCHHHHHHHHHHHHHSSSTTCHHHHHHHTCSCEEECTTSEEEEEETTTEEEE
T ss_pred             ccccHHHHHHHHHHHhCCCcCCCCCCEEECHHHHHHHHHHHhhcCCchhHHHHHHHcCCccccccCceEEEEeCCceEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCccccccceee
Q psy8041          81 LFFRTTQNVFVLFVGHR   97 (101)
Q Consensus        81 v~SP~LD~~gn~~~~~~   97 (101)
                      +|||+||++|||.+|-+
T Consensus       278 v~SP~LD~~GNSv~G~~  294 (308)
T 2pby_A          278 VFGPALDDKGNSLTGVK  294 (308)
T ss_dssp             EECCCBCTTSSBHHHHH
T ss_pred             EECCCCCCCCCcHHHHH
Confidence            99999999999999854

>1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI, protein structure initiat midwest center for structural genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2

Probab=100.00  E-value=3.3e-51  Score=327.20  Aligned_cols=97  Identities=38%  Similarity=0.621  Sum_probs=95.1

Q ss_pred             CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceeeecceeeccCCceEEEEecCceEEE
Q psy8041           1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIA   80 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKSGVsGgIlavvPg~~gIa   80 (101)
                      |+|||+|||+||++|||+|+||+||||+++++++|+++|+|+||||||+||+|||+||+|+|||||||||+||||++|||
T Consensus       198 i~vt~~dLA~~~a~LAn~G~~P~tg~~vl~~~~~r~v~a~M~TcGmYd~SG~fa~~VGlPaKSGVgGGIlavvPg~~gIa  277 (310)
T 1u60_A          198 TLLNTIELATLGATLAAGGVNPLTHKRVLQADNVPYILAEMMMEGLYGRSGDWAYRVGLPGKSGVGGGILAVVPGVMGIA  277 (310)
T ss_dssp             EEECHHHHHHHHHHHHTTSEETTTTEECSCGGGHHHHHHHHHHHTTGGGHHHHHHHTCSCEEECTTSEEEEEETTTEEEE
T ss_pred             ccccHHHHHHHHHHHhCCCcCCCCCCEecCHHHHHHHHHHHhhcCCchhHHHHHHHcCCceeccCCceEEEEeCCceEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCccccccceee
Q psy8041          81 LFFRTTQNVFVLFVGHR   97 (101)
Q Consensus        81 v~SP~LD~~gn~~~~~~   97 (101)
                      ||||+||++|||.+|-+
T Consensus       278 v~SP~LD~~GNSv~G~~  294 (310)
T 1u60_A          278 AFSPPLDEDGNSVRGQK  294 (310)
T ss_dssp             EECSCBCTTSCBHHHHH
T ss_pred             EECCCCCCCCCcHHHHH
Confidence            99999999999999854

>3voy_A Glutaminase kidney isoform, mitochondrial; hydrolase; 2.20A {Homo sapiens} PDB: 3czd_A 3voz_A* 3vp0_A* 3vp1_A* 3vp2_A 3vp3_A 3vp4_A

Probab=100.00  E-value=3.9e-51  Score=327.46  Aligned_cols=97  Identities=62%  Similarity=0.994  Sum_probs=95.1

Q ss_pred             CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceeeecceeeccCCceEEEEecCceEEE
Q psy8041           1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIA   80 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKSGVsGgIlavvPg~~gIa   80 (101)
                      |+|||+|||+||++|||+|+||+||||+++++++|+++|+|+||||||+||+|||+||+|+|||||||||+|+||++|||
T Consensus       202 i~vt~~dLA~~~a~LAn~G~~P~tg~~vl~~~~~r~v~alM~TcGmYd~SG~fa~~VGlPaKSGVgGGIlavvPg~~gIa  281 (315)
T 3voy_A          202 IEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLPAKSGVAGGILLVVPNVMGMM  281 (315)
T ss_dssp             EEECHHHHHHHHHHHHTTTBCTTTCCBCSCHHHHHHHHHHHHHHSSGGGHHHHHHHTCSCEEECTTSEEEEEETTTEEEE
T ss_pred             ccccHHHHHHHHHHHHcCCcCCCCCCEecCHHHHHHHHHHHhHcCCcchHHHHHHHcCCcccccccceEEEEeCCCcEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCccccccceee
Q psy8041          81 LFFRTTQNVFVLFVGHR   97 (101)
Q Consensus        81 v~SP~LD~~gn~~~~~~   97 (101)
                      +|||+||++|||.+|-+
T Consensus       282 v~SP~LD~~GNSv~G~~  298 (315)
T 3voy_A          282 CWSPPLDKMGNSVKGIH  298 (315)
T ss_dssp             EECSEECTTSCBHHHHH
T ss_pred             EECCCCCCCCCcHHHHH
Confidence            99999999999999854

>1mki_A Probable glutaminase YBGJ; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; HET: SEP; 2.00A {Bacillus subtilis} SCOP: e.3.1.2 PDB: 2osu_A* 3brm_A* 3agf_A

Probab=100.00  E-value=1.3e-49  Score=320.44  Aligned_cols=97  Identities=37%  Similarity=0.618  Sum_probs=95.2

Q ss_pred             CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceeeecceeeccCCceEEEEec------
Q psy8041           1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVP------   74 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKSGVsGgIlavvP------   74 (101)
                      |+|||+|||+|+++|||+|+||+||||+++++++|+++|+|+||||||+||+|||+||+|+|||||||||+|||      
T Consensus       210 i~vt~~dLA~~~a~LAn~G~~P~tge~vi~~~~~r~v~alM~TCGmYd~SGefa~~VGlPaKSGVgGGIlavvP~~~~~~  289 (330)
T 1mki_A          210 MESTTEDIALIGLILAHDGYHPIRHEQVIPKDVAKLAKALMLTCGMYNASGKYAAFVGVPAKSGVSGGIMALVPPSARRE  289 (330)
T ss_dssp             BEECHHHHHHHHHHHHTTTEETTTTEECSCHHHHHHHHHHHHHHTTGGGHHHHHHHTCSCEEECTTSEEEEEECTTTTCS
T ss_pred             hhcCHHHHHHHHHHHhCCCcCCCCCCEEECHHHHHHHHHHHhhcCCchhHHHHHHHcCCceeccccceEEEEeccccccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999      


Q ss_pred             ----CceEEEEEcCCCCccccccceee
Q psy8041          75 ----NTMGIALFFRTTQNVFVLFVGHR   97 (101)
Q Consensus        75 ----g~~gIav~SP~LD~~gn~~~~~~   97 (101)
                          |++|||+|||+||++|||.+|-+
T Consensus       290 ~~~~g~~gIav~SP~LD~~GNSv~G~~  316 (330)
T 1mki_A          290 QPFQSGCGIGIYGPAIDEYGNSLTGGM  316 (330)
T ss_dssp             STTTTCEEEEEECSCBCTTSSBHHHHH
T ss_pred             ccccCCeeEEEECCCCCCCCCcHHHHH
Confidence                99999999999999999999854

>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase; 2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A

Probab=100.00  E-value=4.3e-49  Score=327.60  Aligned_cols=97  Identities=41%  Similarity=0.616  Sum_probs=95.1

Q ss_pred             CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceeeecceeeccCCceEEEEecCceEEE
Q psy8041           1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIA   80 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKSGVsGgIlavvPg~~gIa   80 (101)
                      |+|||+|||+|+++|||+|+||+|||++++++++|+++|+|+||||||+||+|||+||||+|||||||||+||||+||||
T Consensus       197 i~vtc~dLA~maatLAN~Gv~P~Tge~vls~~~~r~v~alM~TCGmYD~SGefA~rVGLPaKSGVgGGIlaVVPg~~GIa  276 (456)
T 3agd_A          197 VLVTVKDLAVMGACLATGGIHPMTGERMLPSIVARRVVSVMTSSGMYDAAGQWLADVGIPAKSGVAGGVLGALPGRVGIG  276 (456)
T ss_dssp             BEECHHHHHHHHHHHHTTSBCTTTCCBCSCHHHHHHHHHHHHHHTTTTSSSCHHHHTCCCEEECTTSEEEEEETTTEEEE
T ss_pred             ccccHHHHHHHHHHHhCCCcCCCCCCEEECHHHHHHHHHHHhhcCCchhHHHHHHHcCCceeccccceEEEEeCCceEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCccccccceee
Q psy8041          81 LFFRTTQNVFVLFVGHR   97 (101)
Q Consensus        81 v~SP~LD~~gn~~~~~~   97 (101)
                      ||||+||++|||.+|-+
T Consensus       277 v~SP~LD~~GNSvrG~~  293 (456)
T 3agd_A          277 VFSPRLDEVGNSARGVL  293 (456)
T ss_dssp             EECSCBCTTSSBHHHHH
T ss_pred             EECCCCCCCCCcHHHHH
Confidence            99999999999999854

>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB: 3unw_A* 3ss3_A 3ss4_A 3ss5_A*

Probab=100.00  E-value=9.5e-49  Score=329.83  Aligned_cols=97  Identities=62%  Similarity=0.994  Sum_probs=95.0

Q ss_pred             CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceeeecceeeccCCceEEEEecCceEEE
Q psy8041           1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIA   80 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKSGVsGgIlavvPg~~gIa   80 (101)
                      |+|||+|||+||++|||+|+||+||||+++++++|+++|+|+||||||+||+|||+||||+|||||||||+||||++|||
T Consensus       350 I~vtc~dLA~mgatLAN~Gv~P~Tgervls~~~vr~vlalM~TCGmYD~SGefA~rVGLPaKSGVgGGIlaVVPg~~GIa  429 (534)
T 3uo9_A          350 IEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLPAKSGVAGGILLVVPNVMGMM  429 (534)
T ss_dssp             EEECHHHHHHHHHHHHTTTBCTTTCCBCSCHHHHHHHHHHHHHHSSGGGHHHHHHHTCSCEEECTTSEEEEEETTTEEEE
T ss_pred             ccccHHHHHHHHHHHHcCCcCCCCCCEecCHHHHHHHHHHHhHcCCcchHHHHHHHcCCcccccccceEEEEeCCCcEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCccccccceee
Q psy8041          81 LFFRTTQNVFVLFVGHR   97 (101)
Q Consensus        81 v~SP~LD~~gn~~~~~~   97 (101)
                      ||||+||++|||.+|-+
T Consensus       430 v~SP~LD~~GNSvrG~~  446 (534)
T 3uo9_A          430 CWSPPLDKMGNSVKGIH  446 (534)
T ss_dssp             EECSCBCTTSCBHHHHH
T ss_pred             EECCCCCCCCCcHHHHH
Confidence            99999999999999854

>3equ_A PBP-2, penicillin-binding protein 2; class B transpeptidase, cell DIV cell inner membrane, cell membrane, cell shape; HET: SEP; 2.40A {Neisseria gonorrhoeae} PDB: 3eqv_A*

Probab=97.03  E-value=0.0032  Score=52.16  Aligned_cols=82  Identities=17%  Similarity=0.281  Sum_probs=58.8

Q ss_pred             CcccHHHHHHHHHHHhCCCC----------CCCCCceeechhhHHHHHHHHHhhccccccccceeeecce--eeccCC--
Q psy8041           1 METTCESFSVIAATLANGGI----------CPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP--AKSGVS--   66 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~----------~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlP--aKSGVs--   66 (101)
                      +.+|.-|||.+.++|||+|+          .+..+++++++++++.+..+|...=-.+..|..+.--|.|  +|+|-+  
T Consensus       385 ~~vTPlqma~a~a~iANgG~~~~p~lv~~~~~~~~~~v~s~~~a~~v~~~m~~vv~~~GTg~~a~~~g~~vaGKTGTaq~  464 (542)
T 3equ_A          385 LQLSLLQLARAYTALTHDGVLLPLSFEKQAVAPQGKRIFKESTAREVRNLMVSVTEPGGTGTAGAVDGFDVGAKTGTARK  464 (542)
T ss_dssp             CBBCHHHHHHHHHHHHTTTEECCCBSBCCSSCCCCEECSCHHHHHHHHHHHHHHHSTTSSCGGGCCTTSCCEEEEEEC--
T ss_pred             cccCHHHHHHHHHHHhcCCeEeCcEEEecccCcCCccCCCHHHHHHHHHHHHHHhcCCCeeEeecCCCCEEEEEeeccee
Confidence            46899999999999999993          3346789999999999999998763223455544333433  788864  


Q ss_pred             ------------ceEEEEecC---ceEEEEE
Q psy8041          67 ------------GSMLVVVPN---TMGIALF   82 (101)
Q Consensus        67 ------------GgIlavvPg---~~gIav~   82 (101)
                                  .-.++..|-   +..++||
T Consensus       465 ~~~g~y~~~~~~awFvG~aP~~~P~~~v~V~  495 (542)
T 3equ_A          465 FVNGRYADNKHVATFIGFAPAKNPRVIVAVT  495 (542)
T ss_dssp             ---------CCEEEEEEEESSSSCCEEEEEE
T ss_pred             cCCCCCCCCCcEEEEEEEEECCCCeEEEEEE
Confidence                        235666773   5677776

>3pbt_A Penicillin-binding protein 3; PBP3, hydrolase-antibiotic complex; HET: UE1; 1.64A {Pseudomonas aeruginosa} PDB: 3pbn_A* 3pbo_A* 3pbr_A* 3pbs_A* 3pbq_A* 4fsf_A* 3oc2_A 3ocl_A* 3ocn_A*

Probab=96.25  E-value=0.0078  Score=50.00  Aligned_cols=82  Identities=18%  Similarity=0.148  Sum_probs=56.0

Q ss_pred             CcccHHHHHHHHHHHhCCCC----------CCCCCceeechhhHHHHHHHHHhhccccccccceeeecce--eeccCC--
Q psy8041           1 METTCESFSVIAATLANGGI----------CPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP--AKSGVS--   66 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~----------~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlP--aKSGVs--   66 (101)
                      +.+|.-|||.+.++|||+|+          .+...++++++++++.+..+|...=-.+..|.-+.--|.+  +|+|-+  
T Consensus       370 ~~vTPlqmA~a~aaiANgG~~~~P~lv~~~~~~~~~~vis~~~a~~v~~~m~~Vv~~~GTg~~a~~~g~~vaGKTGTaq~  449 (538)
T 3pbt_A          370 LSVTAIQLAHAYAALANDGKSVPLSMTRVDRVPDGVQVISPEVASTVQGMLQQVVEAQGGVFRAQVPGYHAAGKSGTARK  449 (538)
T ss_dssp             CBBCHHHHHHHHHHHHTTTEECCCBSBCCSSCCCCEECSCHHHHHHHHHHHHHHHHSTTSCGGGCBTTBCCEEEEEEEEC
T ss_pred             CCCCHHHHHHHHHHHhcCCeEeccEEEeccCCccCccCCCHHHHHHHHHHHHHHhcCCCceeeccCCCCeEEEEecccCc
Confidence            36899999999999999993          3445788999999999999997653223444443322332  677742  


Q ss_pred             --------------ceEEEEecC---ceEEEEE
Q psy8041          67 --------------GSMLVVVPN---TMGIALF   82 (101)
Q Consensus        67 --------------GgIlavvPg---~~gIav~   82 (101)
                                    .-.++..|-   +..++||
T Consensus       450 ~~~~~~~y~~~~~~awFvG~aP~~~P~~~vaV~  482 (538)
T 3pbt_A          450 VSVGTKGYRENAYRSLFAGFAPATDPRIAMVVV  482 (538)
T ss_dssp             ----------CCEEEEEEEEESSSSCCEEEEEE
T ss_pred             CCcCCCcccCCCceEEEEEEeeCCCCCEEEEEE
Confidence                          235566662   5567776

>3ue3_A Septum formation, penicillin binding protein 3, peptidoglycan synthetase; transpeptidase, transferase; 2.30A {Acinetobacter}

Probab=96.03  E-value=0.031  Score=46.53  Aligned_cols=82  Identities=20%  Similarity=0.231  Sum_probs=56.1

Q ss_pred             CcccHHHHHHHHHHHhCCCCC--C--------CCCceeechhhHHHHHHHHHhhccccccccceeeecce--eeccCC--
Q psy8041           1 METTCESFSVIAATLANGGIC--P--------ITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP--AKSGVS--   66 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~--p--------~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlP--aKSGVs--   66 (101)
                      +.+|.-|||.+.++|||+|+-  |        ..+++++++++++.+..+|...=--+..|..+.--|.+  +|+|-.  
T Consensus       397 ~~vTPlqmA~a~aaiANgG~~~~P~lv~~~~~~~~~~vis~~~a~~v~~~m~~Vv~~~GTg~~a~~~g~~vaGKTGTAq~  476 (554)
T 3ue3_A          397 LNATILQLAQGYAMLANHGVEMPLSLHKLDQVPEGRQVLDPKIADQVLMMLEQVTLPGGTAKQAVIPGYRVGGKTGTAHK  476 (554)
T ss_dssp             SBBCHHHHHHHHHHHTTTTEECCCBSBCCSSCCCCEECSCHHHHHHHHHHHHHHTSTTCSCGGGCBTTBCCEEEEEEEEC
T ss_pred             cCcCHHHHHHHHHHHhcCCeEeccEEEEeccCCCCccCCCHHHHHHHHHHHHHhhcCCCceeeccCCCCEEEEEeccccc
Confidence            368999999999999999952  1        15678999999999999998752113344444322332  676641  


Q ss_pred             --------------ceEEEEec---CceEEEEE
Q psy8041          67 --------------GSMLVVVP---NTMGIALF   82 (101)
Q Consensus        67 --------------GgIlavvP---g~~gIav~   82 (101)
                                    .-.++..|   -+..++||
T Consensus       477 ~~~~~g~y~~~~~~awFvG~aP~~~P~~~v~V~  509 (554)
T 3ue3_A          477 LRADRKGYSNSEYRALFAGVAPVSDPRLAMIVV  509 (554)
T ss_dssp             CCTTCSSCCSSSEEEEEEEEECTTSCCEEEEEE
T ss_pred             CCcCCCccCCCCceEEEEEEEECCCCCEEEEEE
Confidence                          23666777   46677777

>2v2f_F Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc6_B* 2zc5_B* 2c6w_B 2c5w_B*

Probab=95.59  E-value=0.053  Score=42.56  Aligned_cols=81  Identities=19%  Similarity=0.243  Sum_probs=54.9

Q ss_pred             cccHHHHHHHHHHHhCCCCC--C-----------------CCCceeechhhHHHHHHHHHhhccccccccceeeec--ce
Q psy8041           2 ETTCESFSVIAATLANGGIC--P-----------------ITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVG--LP   60 (101)
Q Consensus         2 ~v~~~dLA~~~a~LAn~G~~--p-----------------~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VG--lP   60 (101)
                      .+|.-|||.+.++|||+|+-  |                 ...++++++++++.+..+|...=- +..|.-+.--|  +=
T Consensus       214 ~vTplqma~aya~iANgG~~~~P~~v~~i~~~~g~~~~~~~~~~~v~s~~~a~~v~~~L~~vv~-~Gtg~~a~~~g~~va  292 (390)
T 2v2f_F          214 GASSEKMAAAYAAFANGGIYHKPMYINKVVFSDGSKKEFSDVGTRAMKETTAYMMTEMMKTVLA-YGTGRGAYLPWLAQA  292 (390)
T ss_dssp             SCCHHHHHHHHHHHHTTSEECCCBCEEEEEETTSCEEECCCCCEECSCHHHHHHHHHHHHHHHH-TSTTGGGCCTTSCCE
T ss_pred             CCCHHHHHHHHHHHHcCCEEecCEEEEEEECCCCCEEecCCCCcccCCHHHHHHHHHHHHHHHh-cCceeeccCCCCeeE
Confidence            57999999999999999851  1                 124678999999999999974311 22333332122  23


Q ss_pred             eeccCC--------------------ceEEEEecCceEEEEEcC
Q psy8041          61 AKSGVS--------------------GSMLVVVPNTMGIALFFR   84 (101)
Q Consensus        61 aKSGVs--------------------GgIlavvPg~~gIav~SP   84 (101)
                      +|+|-+                    .-.++..| +..++||-.
T Consensus       293 GKTGTa~~~~~~~~~~~~~~~~~~~~awFvG~~P-~~~~aV~vg  335 (390)
T 2v2f_F          293 GKTGTSNYTDDEIEKHIKNTGYVAPDEMFVGYTR-KYSMAVWTG  335 (390)
T ss_dssp             EEEEECCCCC-----------CCBSEEEEEEECS-SEEEEEEEE
T ss_pred             EEccCCCCCCcccccccccccCCcCceEEEEeCC-CcEEEEEEE
Confidence            777753                    23777788 568888853

>2olv_A Penicillin-binding protein 2; transpeptidase fold, glycosyltransferase family 51, lysozyme transferase; HET: M0E; 2.80A {Staphylococcus aureus} SCOP: d.2.1.10 e.3.1.1 PDB: 2olu_A* 3dwk_A*

Probab=94.48  E-value=0.12  Score=43.98  Aligned_cols=82  Identities=17%  Similarity=0.113  Sum_probs=56.8

Q ss_pred             cccHHHHHHHHHHHhCCCC--CCC-----------------CCceeechhhHHHHHHHHHhhccccccccceeeecc--e
Q psy8041           2 ETTCESFSVIAATLANGGI--CPI-----------------TEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGL--P   60 (101)
Q Consensus         2 ~v~~~dLA~~~a~LAn~G~--~p~-----------------tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGl--P   60 (101)
                      ++|.-|||.+.++|||+|+  .|.                 ..++++++++++.+..+|...=--+..|..+.--|.  -
T Consensus       444 ~vTplqmA~ayaa~ANgG~~~~P~~v~~i~d~~G~~~~~~~~~~~vis~~~a~~v~~~L~~Vv~~~GTg~~a~~~g~~vA  523 (669)
T 2olv_A          444 EFSPTQLASAFAAIANGGTYNNAHSIQKVVTRDGETIEYDHTSHKAMSDYTAYMLAEMLKGTFKPYGSAYGHGVSGVNMG  523 (669)
T ss_dssp             EECHHHHHHHHHHHHTTSEEECCBCEEEEECTTSCEEECCCCEEECSCHHHHHHHHHHHGGGSSTTSTTTTCCCSSCCCE
T ss_pred             CCCHHHHHHHHHHHHcCCEEeccEEEEEEEcCCCCEeecCccccccCCHHHHHHHHHHHHHhhcCCCceecccCCCCeEE
Confidence            5799999999999999985  121                 235789999999999999754110344555443343  3


Q ss_pred             eeccCC-------------------ceEEEEecCceEEEEEcC
Q psy8041          61 AKSGVS-------------------GSMLVVVPNTMGIALFFR   84 (101)
Q Consensus        61 aKSGVs-------------------GgIlavvPg~~gIav~SP   84 (101)
                      +|+|-+                   .-.++..| +..++||--
T Consensus       524 GKTGTa~~~~~~~~~y~~~~~~~~daWFvG~tP-~~~vaVwvg  565 (669)
T 2olv_A          524 AKTGTGTYGAETYSQYNLPDNAAKDVWINGFTP-QYTMSVWMG  565 (669)
T ss_dssp             EEEEEECCCHHHHHHTTCCTTEESEEEEEEECS-SEEEEEEEE
T ss_pred             EEeccCccCCccccccccccCCCceEEEEEEcC-ceEEEEEEE
Confidence            788853                   23677778 568899853

>1vqq_A Saupbp2A, penicillin-binding protein MECA, low-affinity; beta-lactam, D- transpeptidase, D-carboxypeptidase, biosynthetic protein; 1.80A {Staphylococcus aureus} SCOP: d.17.4.5 d.175.1.1 e.3.1.1 PDB: 1mwu_A* 1mwr_A 1mws_A* 1mwt_A*

Probab=94.00  E-value=0.088  Score=44.41  Aligned_cols=82  Identities=17%  Similarity=0.167  Sum_probs=52.3

Q ss_pred             CcccHHHHHHHHHHHhCCCC--CC---------CCCceeechhhHHHHHHHHHhhcccccccccee-eecceeeccCC--
Q psy8041           1 METTCESFSVIAATLANGGI--CP---------ITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAF-KVGLPAKSGVS--   66 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~--~p---------~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~-~VGlPaKSGVs--   66 (101)
                      +.+|.-|||.+.++|||+|+  .|         ...++++++++++.+..+|...=-....|..+. ..-+=+|+|-.  
T Consensus       502 ~~vTPlqmA~a~aaiAN~G~~~~P~lv~~~~~~~~~~~vis~~~a~~v~~~m~~Vv~~~GTg~~a~~~~~vaGKTGTaq~  581 (646)
T 1vqq_A          502 ILINPVQILSIYSALENNGNINAPHLLKDTKNKVWKKNIISKENINLLTDGMQQVVNKTHKEDIYRSYANLIGKSGTAEL  581 (646)
T ss_dssp             CBBCHHHHHHHHHGGGTTTCEECCBCBTTSCCCEEECCCSCHHHHHHHHHHHHHHHHTTTTTTTCCTTSCEEEEEEEEEC
T ss_pred             cccCHHHHHHHHHHHhcCCeEeeeEEEecCCCCccccCCCCHHHHHHHHHHHHHHhcCCCceecccCCceEEEEeeccee
Confidence            46899999999999999985  11         113578999999999999975421112333221 12233777743  


Q ss_pred             -----------ceEEEEec---CceEEEEEc
Q psy8041          67 -----------GSMLVVVP---NTMGIALFF   83 (101)
Q Consensus        67 -----------GgIlavvP---g~~gIav~S   83 (101)
                                 +-.++. |   .+..++||-
T Consensus       582 ~~~~~~~~~~~awFvG~-p~~~P~~avaV~v  611 (646)
T 1vqq_A          582 KMKQGETGRQIGWFISY-DKDNPNMMMAINV  611 (646)
T ss_dssp             C------CCEEEEEEEE-ETTSCSCEEEEEE
T ss_pred             CCCCCCCCccEEEEEEE-eCCCCcEEEEEEE
Confidence                       224555 6   566777774

>4gb7_A 6-aminohexanoate-dimer hydrolase; structural genomics, IDP05595, national institute of allergy and infectious diseases; HET: MSE; 1.60A {Bacillus anthracis}

Probab=93.16  E-value=0.12  Score=40.51  Aligned_cols=80  Identities=18%  Similarity=0.215  Sum_probs=50.7

Q ss_pred             cccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceee---------ecceeeccCCceEEEE
Q psy8041           2 ETTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFK---------VGLPAKSGVSGSMLVV   72 (101)
Q Consensus         2 ~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~---------VGlPaKSGVsGgIlav   72 (101)
                      -.|.+|+|+++..+.|+|.  +.|+|+|+++.++...+.-..---+.....+.|.         -|.=..+|.+|-.+.|
T Consensus       304 ~sta~D~arfg~l~l~~G~--~~g~qil~~~~v~~~~~~~~~~~~~~~~~~~~YG~~ww~~~~~~~~~~~~G~~Gq~i~v  381 (422)
T 4gb7_A          304 NATARDMARFGQLLLNNGE--YNGKQILPSSITEDIKNVQEGELAIGPGASISYHNQWWIPHNEQGAFEVLGSYGQTLYI  381 (422)
T ss_dssp             EECHHHHHHHHHHHHTTTE--ETTEESSCTHHHHHHHTCCTTSSBSSTTCSCEEETTEEECCCTTCCEEEEETTTEEEEE
T ss_pred             ecCHHHHHHHHHHHHcCCc--cCCeEecCHHHHHHHhccCCCCcccCCCCCCCCCcceeecCCCCCeEEEEccCCeEEEE
Confidence            3689999999999999996  5799999999887643221110000011111111         1222456889988899


Q ss_pred             ecCce-EEEEEc
Q psy8041          73 VPNTM-GIALFF   83 (101)
Q Consensus        73 vPg~~-gIav~S   83 (101)
                      .|.+- .|..+|
T Consensus       382 dP~~~lviV~ls  393 (422)
T 4gb7_A          382 DPKAKMVIVHFS  393 (422)
T ss_dssp             ETTTTEEEEEEE
T ss_pred             EecCCEEEEEeC
Confidence            99875 455565

>3un7_A PBPA, penicillin-binding protein A; transpeptidase, peptidoglycan, B lactam, transferase; 2.00A {Mycobacterium tuberculosis} PDB: 3upn_A* 3upo_A* 3upp_A* 3lo7_A

Probab=92.92  E-value=0.1  Score=42.00  Aligned_cols=43  Identities=30%  Similarity=0.399  Sum_probs=35.3

Q ss_pred             CcccHHHHHHHHHHHhCCCC--CC-------------------CCCceeechhhHHHHHHHHHh
Q psy8041           1 METTCESFSVIAATLANGGI--CP-------------------ITEEKVLRSESVRDVLSLMHS   43 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~--~p-------------------~tge~vl~~~~~r~v~alM~t   43 (101)
                      +.+|.-|||.+.++|||+|+  .|                   ...++++++++++.+..+|..
T Consensus       313 ~~vTPLqmA~a~aaiANgG~~~~P~lV~~i~~~~g~~~~~~~~~~~~~vis~~~a~~~~~~m~~  376 (462)
T 3un7_A          313 VALTPLANAEIAATIANGGITMRPYLVGSLKGPDLANISTTVRYQQRRAVSPQVAAKLTELMVG  376 (462)
T ss_dssp             CBBCHHHHHHHHHHHHTTTEEECCBSEEEEECTTCCEEEECCCCEEEECSCHHHHHHHHHHHHH
T ss_pred             eeeeHHHHHHHhhhhcCCCeecccEEEEEEEcCCCceeecccccccccccCHHHHHHHHHHHHh
Confidence            46899999999999999996  22                   224578999999999999964

>2x02_A Beta-lactamase OXA-10; class D, hydrolase, antibiotic resistance; HET: KCX PG4; 1.35A {Pseudomonas aeruginosa} PDB: 1k4e_A* 1k6r_A* 1k6s_A* 1k4f_A* 2x01_A* 2wgv_A* 2wgw_A* 2wkh_A* 2wki_A 2rl3_A* 2hpb_A 2hp9_A 2hp6_A 2wgi_A* 2hp5_A 1fof_A 1k55_A* 1e4d_A* 1ewz_A 1k54_A* ...

Probab=92.63  E-value=0.087  Score=38.70  Aligned_cols=35  Identities=9%  Similarity=-0.081  Sum_probs=31.9

Q ss_pred             CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHH
Q psy8041           1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMH   42 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~   42 (101)
                      +.+|..|+|.+.+.|||+|       +++++++.+.+..+|.
T Consensus       141 ~~~Tpl~ma~~~~~ian~g-------~~~s~~~~~~~~~~m~  175 (248)
T 2x02_A          141 LRISAVNQVEFLESLYLNK-------LSASKENQLIVKEALV  175 (248)
T ss_dssp             CCEEHHHHHHHHHHHHTTC-------SSSCHHHHHHHHHHTE
T ss_pred             cccCHHHHHHHHHHHHcCC-------cCCCHHHHHHHHHhhc
Confidence            3689999999999999998       5799999999999998

>2wuq_A BLAB, beta-lactamase regulatory protein BLAB; class A beta-lactamase fold, transcription regulation, beta-lactamase induction, transcription; 1.80A {Streptomyces cacaoi}

Probab=92.46  E-value=0.26  Score=36.22  Aligned_cols=42  Identities=21%  Similarity=0.238  Sum_probs=30.9

Q ss_pred             cccHHHHHHHHHHHhCC---CCCCCCCceeechhhHHHHHHHHHh
Q psy8041           2 ETTCESFSVIAATLANG---GICPITEEKVLRSESVRDVLSLMHS   43 (101)
Q Consensus         2 ~v~~~dLA~~~a~LAn~---G~~p~tge~vl~~~~~r~v~alM~t   43 (101)
                      .+|..|+|++.+.|+|+   ...|...+++++++..+.++.+|..
T Consensus       189 ~~Tp~d~a~~~~~l~~~~~~~~~~~~~~~~ls~~~~~~l~~~m~~  233 (318)
T 2wuq_A          189 TGTARAFVDLLEALWAPVLTGPRPGRTSRALPPEPAARLRELMAA  233 (318)
T ss_dssp             EECHHHHHHHHHHHHGGGCCCC-------CCCHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHcCCccccccccccccCCHHHHHHHHHHHhc
Confidence            47999999999999998   1123334478999999999999986

>2jch_A Penicillin-binding protein 1B; peptidoglycan synthesis multifunctional enzyme, cell WALL, peptidoglycan, gamma lactam antibiotics; HET: PL7; 2.4A {Streptococcus pneumoniae} PDB: 2jci_A* 2je5_A*

Probab=89.24  E-value=0.51  Score=40.45  Aligned_cols=83  Identities=14%  Similarity=0.142  Sum_probs=54.5

Q ss_pred             CcccHHHHHHHHHHHhCCCC-----------CC---------CCCceeechhhHHHHHHHHHhhccccccccce------
Q psy8041           1 METTCESFSVIAATLANGGI-----------CP---------ITEEKVLRSESVRDVLSLMHSCGMYDYSGQFA------   54 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~-----------~p---------~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa------   54 (101)
                      +++|.-|||.+.++|||+|+           ++         ...+++++++++..+..+|...= -+..|..+      
T Consensus       489 ~~vTplqma~ayat~ANgG~~~~P~~I~~i~d~~G~~i~~~~~~~~~vis~~ta~~~~~~L~~Vv-~~Gtg~~~~~~~~~  567 (720)
T 2jch_A          489 IEVTVAQHTNGYQTLANNGVYHQKHVISKIEAADGRVVYEYQDKPVQVYSKATATIMQGLLREVL-SSRVTTTFKSNLTS  567 (720)
T ss_dssp             CCBCHHHHHHHHHHHHTTTEECCCBSEEEEECTTSCEEEECCCCCEESSCHHHHHHHHHHHHHHH-HHCSSCCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHcCCeecccEEEEEEEcCCCCEEeecCCCcccCCCHHHHHHHHHHHHhhh-hcCCcccchhcccc
Confidence            46899999999999999995           21         12357899999999999997431 11122210      


Q ss_pred             -----eeecceeeccCC-----ceEEEEecCceEEEEEcCC
Q psy8041          55 -----FKVGLPAKSGVS-----GSMLVVVPNTMGIALFFRT   85 (101)
Q Consensus        55 -----~~VGlPaKSGVs-----GgIlavvPg~~gIav~SP~   85 (101)
                           ...-+=+|+|-+     .=.++..|. ..++||---
T Consensus       568 ~~~~~~~~~vAGKTGTa~~~~daWFvGytP~-~~~~VwvG~  607 (720)
T 2jch_A          568 LNPTLANADWIGKTGTTNQDENMWLMLSTPR-LTLGGWIGH  607 (720)
T ss_dssp             HCHHHHTSCCEEEEEECTTSCEEEEEEECSS-EEEEEEEEC
T ss_pred             cccccCCCeEEEEcccCCCcCCEEEEEECCC-eEEEEEEec
Confidence                 011233788864     346677784 578888643

>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance, cell WALL, transmembrane; 2.4A {Streptococcus pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1 PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B* 2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A* 2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C*

Probab=88.56  E-value=0.47  Score=39.89  Aligned_cols=44  Identities=14%  Similarity=0.104  Sum_probs=34.5

Q ss_pred             CcccHHHHHHHHHHHhCCCC-----------CCCC----------CceeechhhHHHHHHHHHhh
Q psy8041           1 METTCESFSVIAATLANGGI-----------CPIT----------EEKVLRSESVRDVLSLMHSC   44 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~-----------~p~t----------ge~vl~~~~~r~v~alM~tc   44 (101)
                      +++|.-|||.+.++|||+|+           ++..          ..+++++++++.+..+|...
T Consensus       406 ~~vTplqma~ayaaiAN~G~~~~P~~v~~i~d~~g~~~~~~~~~~~~~~is~~~a~~v~~~m~~v  470 (702)
T 1qme_A          406 ISVTQTQMIRAFTAIANDGVMLEPKFISAIYDPNDQTARKSQKEIVGNPVSKDAASLTRTNMVLV  470 (702)
T ss_dssp             CBBCHHHHHHHHHHHHTTTCEECCBCEEEEEETTTTEEEECCCCEEECCSCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHhcCCEEeccEEEEEEecCCCceeeccCCcccCccCCHHHHHHHHHHHHHh
Confidence            36899999999999999995           2210          12468999999999999765

>3vsk_A Penicillin-binding protein 3; penicillin-binding domain, transpeptidase; 2.30A {Staphylococcus aureus} PDB: 3vsl_A*

Probab=88.52  E-value=1.2  Score=37.08  Aligned_cols=81  Identities=20%  Similarity=0.279  Sum_probs=50.3

Q ss_pred             cccHHHHHHHHHHHhCCCC--CCCC--------C-----------------ceeechhhHHHHHHHHHhhcc-ccccccc
Q psy8041           2 ETTCESFSVIAATLANGGI--CPIT--------E-----------------EKVLRSESVRDVLSLMHSCGM-YDYSGQF   53 (101)
Q Consensus         2 ~v~~~dLA~~~a~LAn~G~--~p~t--------g-----------------e~vl~~~~~r~v~alM~tcGm-Yd~SG~f   53 (101)
                      .+|.-|||.+.++|||+|+  .|.-        +                 +..+++++++.+...|...=- -+.+|..
T Consensus       482 ~vTPLQma~a~aaiAN~G~~~~P~lv~~i~~~~~~~~~~~~~~~~~~~v~~~~~~s~~~~~~v~~~m~~vv~~~~GTg~~  561 (646)
T 3vsk_A          482 TYTPLQLSQYVSTIANDGYRIQPHIGLTIHESTNKDEVGPLKKKINGTVLNKVNNTEKEIKQIQEGFKMAFNDKDGTGYV  561 (646)
T ss_dssp             CBCHHHHHHHHHHHHTTTEEECCBSEEEECCCCSSSSCCCCCEECCCCEEEECSCCHHHHHHHHHHHHTTTSSTTSTTHH
T ss_pred             ccCcHHHHHHHHHHhcCCeEeeeEEEEEEecCCCceeccccccccCccccccccCCHHHHHHHHHHHHHhCcCCCceeeh
Confidence            4789999999999999995  3421        1                 112577888989888875411 1234444


Q ss_pred             eee-ecce--eeccCC-----c------eEEEEecC---ceEEEEE
Q psy8041          54 AFK-VGLP--AKSGVS-----G------SMLVVVPN---TMGIALF   82 (101)
Q Consensus        54 a~~-VGlP--aKSGVs-----G------gIlavvPg---~~gIav~   82 (101)
                      +++ .|.|  +|+|-+     |      -.++..|-   +..|+||
T Consensus       562 a~~~~~~~vaGKTGTAq~~~~~~~~~~awFvGfaP~d~P~~avaVv  607 (646)
T 3vsk_A          562 SFKDTVVPTAGKTGTAEVFQNGEPRVNSTYIGYAPIDDPKLAFSIV  607 (646)
T ss_dssp             HHSSCSSCCEEEEEEEEEEC--CEEEEEEEEEEECSSSCCEEEEEE
T ss_pred             hhcCCCCEEEEEcccceeccCCCCceeEEEEEEeEcCCCeEEEEEE
Confidence            433 3444  788873     2      35666663   3556665

>2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis, transme antibiotic resistance, cell shape, peptidoglycan; 2.18A {Streptococcus pneumoniae} PDB: 2wae_A 2waf_A

Probab=88.16  E-value=2.4  Score=35.67  Aligned_cols=86  Identities=13%  Similarity=0.091  Sum_probs=54.9

Q ss_pred             cccHHHHHHHHHHHhCCCC-----------CCCC----C------------ceeechhhHHHHHHHHHhhccc-cccccc
Q psy8041           2 ETTCESFSVIAATLANGGI-----------CPIT----E------------EKVLRSESVRDVLSLMHSCGMY-DYSGQF   53 (101)
Q Consensus         2 ~v~~~dLA~~~a~LAn~G~-----------~p~t----g------------e~vl~~~~~r~v~alM~tcGmY-d~SG~f   53 (101)
                      .+|.-|||.+.++|||+|+           ++..    |            ++++++++++.+..+|...=-. +..|.-
T Consensus       522 ~vTPlqma~a~aaiANgG~~~~P~lv~~i~~~~~~~~~G~~v~~~~~~~~~~~~~s~~~a~~v~~~m~~vv~~~~GT~~~  601 (680)
T 2wad_A          522 NYTPMQLAQYVATIANNGVRLAPHIVEGIYDNNDKGGLGELIQAIDTKEINKVNISESDMAILHQGFYQVSHGTSPLTTG  601 (680)
T ss_dssp             BBCHHHHHHHHHHHHTTTEEECCBSEEEEEEECTTSSEEEEEEECCCCEEEECSSCHHHHHHHHHHHHHHHHCCSTTCCC
T ss_pred             chhHHHHHHHHHHHHcCCEEeecEEEEEeecCCcccccCceeeccCCccccccCCCHHHHHHHHHHHHHHhcCCCCceEe
Confidence            4799999999999999985           2210    1            1248999999999999754111 122222


Q ss_pred             e---eeec--ceeeccCC------------ceEEEEec---CceEEEEEcCCCC
Q psy8041          54 A---FKVG--LPAKSGVS------------GSMLVVVP---NTMGIALFFRTTQ   87 (101)
Q Consensus        54 a---~~VG--lPaKSGVs------------GgIlavvP---g~~gIav~SP~LD   87 (101)
                      +   ..-|  +=+|+|-+            .-.++..|   -+..++||-|--+
T Consensus       602 a~~~~~~g~~vaGKTGTaq~~~~~~~~~~~awFvG~aP~d~P~~avaV~v~~~~  655 (680)
T 2wad_A          602 RAFSDGATVSISGKTGTGESYVAGGQEATNTNAVAYAPTENPQIAVAVVFPHNT  655 (680)
T ss_dssp             GGGTTTCSSCCEEEECC------------CCCEEEEESTTSCCEEEEEECTTCC
T ss_pred             eccccCCCceEEEEeecccccCCCCCCcceEEEEEEeeCCCCEEEEEEEEecCC
Confidence            1   1123  33787753            24677888   3678999987543

>1ghp_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance, beta-lactam hydrolysis, benzylpenicillin, cephaloridine; HET: PNM; 1.76A {Staphylococcus aureus} SCOP: e.3.1.1 PDB: 1ghi_A* 1ghm_A* 1kgf_A 1kge_A 1ome_A 1kgg_A 1dja_A 3blm_A 1blh_A* 1blc_A 1djc_A 1djb_A 1blp_A 1pio_A

Probab=82.93  E-value=1.2  Score=31.91  Aligned_cols=36  Identities=25%  Similarity=0.274  Sum_probs=31.1

Q ss_pred             cccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhc
Q psy8041           2 ETTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCG   45 (101)
Q Consensus         2 ~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcG   45 (101)
                      .+|..|+|++...|+++.        +++++..+.+..+|....
T Consensus       148 ~~T~~d~a~~~~~l~~~~--------~ls~~~~~~l~~~m~~~~  183 (258)
T 1ghp_A          148 TSTPAAFGKTLNKLIANG--------KLSKENKKFLLDLMLNNK  183 (258)
T ss_dssp             EECHHHHHHHHHHHTTSS--------SSCHHHHHHHHHHHHHCG
T ss_pred             ccCHHHHHHHHHHHHcCC--------CCCHHHHHHHHHHHHcCC
Confidence            368999999999999864        789999999999998754

>3lez_A Beta-lactamase; antibiotic resistance, halotolerant, DEEP- SEA bacterium, hydrolase; HET: EPE; 1.25A {Oceanobacillus iheyensis} SCOP: e.3.1.1

Probab=82.91  E-value=3.2  Score=30.63  Aligned_cols=69  Identities=16%  Similarity=0.301  Sum_probs=47.6

Q ss_pred             ccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceeeecce------eeccCC--ce--E--E
Q psy8041           3 TTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP------AKSGVS--GS--M--L   70 (101)
Q Consensus         3 v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlP------aKSGVs--Gg--I--l   70 (101)
                      .|.+|+|++...|.++.        +++++..+.++.+|..+-.    |.-..+.|+|      .|+|-+  |.  -  +
T Consensus       150 tTp~d~a~ll~~l~~g~--------~ls~~~~~~l~~~m~~~~~----~~~~l~a~lP~g~~Va~KTGt~~~g~~~d~gi  217 (260)
T 3lez_A          150 STAKAMATTLQQYVLED--------VLDADRREVLTNMLINNTT----GDALIRAGVPDGWTVGDKTGAGGYGTRNDIGI  217 (260)
T ss_dssp             EEHHHHHHHHHHHHTSS--------SSCHHHHHHHHHHHHTCSS----CTTTGGGGSCTTCEEEEEEEEETTTEEEEEEE
T ss_pred             cCHHHHHHHHHHHHcCC--------CCCHHHHHHHHHHHhcCCC----CCccccccCCCCCEEEeecCCCCCCCcCceEE
Confidence            58899999999999865        6899999999999987732    2222345666      488863  32  1  2


Q ss_pred             EEec---CceEEEEEc
Q psy8041          71 VVVP---NTMGIALFF   83 (101)
Q Consensus        71 avvP---g~~gIav~S   83 (101)
                      .-.|   ...-|+||.
T Consensus       218 v~~p~~~~~~vvaV~~  233 (260)
T 3lez_A          218 IWPEGDEEPIVIAIMS  233 (260)
T ss_dssp             EECTTTCCCEEEEEEE
T ss_pred             EecCCCCCcEEEEEEe
Confidence            2345   456677775

>2dcf_A 6-aminohexanoate-dimer hydrolase; HET: ACA MES; 1.40A {Flavobacterium SP} SCOP: e.3.1.1 PDB: 3a65_A* 1wyc_A 2zm7_A* 2e8i_A* 2zma_A* 3a66_A* 2zm0_A* 1wyb_A 2zm8_A* 2zly_A* 2zm9_A* 2zm2_A*

Probab=81.37  E-value=1.1  Score=35.12  Aligned_cols=85  Identities=21%  Similarity=0.251  Sum_probs=53.3

Q ss_pred             cccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhcc-----------cccccccee---eecceeeccCCc
Q psy8041           2 ETTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGM-----------YDYSGQFAF---KVGLPAKSGVSG   67 (101)
Q Consensus         2 ~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGm-----------Yd~SG~fa~---~VGlPaKSGVsG   67 (101)
                      -.|.+|||+++..|.|+|.-  .|+++|+++.++...+--....+           +.+.-.|..   ..+.=..+|..|
T Consensus       270 ~sT~~Dlar~~~~ll~~G~~--~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~gw~~~~~~~~~~~h~G~~G  347 (392)
T 2dcf_A          270 SCTARDLARVGRMMLDGGVA--PGGRVVSEDWVRRVLAGGSHEAMTDKGFTNTFPDGSYTRQWWCTGNERGNVSGIGIHG  347 (392)
T ss_dssp             EECHHHHHHHHHHHHTTTEE--TTEECSCHHHHHHHHHCCCTTTCCCHHHHHHCTTCEEETTEEECCCTTCCEEEEETTT
T ss_pred             ecCHHHHHHHHHHHHcCCcc--CCEEeCCHHHHHHHhccCCchhcccccccCCCCCCCcCcceEecCCCCCeEEEEccCC
Confidence            36899999999999999963  78999999988865542100000           011111211   112224578888


Q ss_pred             eEEEEecCc-eEEEEEcCCCCc
Q psy8041          68 SMLVVVPNT-MGIALFFRTTQN   88 (101)
Q Consensus        68 gIlavvPg~-~gIav~SP~LD~   88 (101)
                      -.+.+.|.. .+|.+.+=.-+.
T Consensus       348 ~~~~i~P~~~~~iv~lsn~~~~  369 (392)
T 2dcf_A          348 QNLWLDPLTDSVIVKLSSWPDP  369 (392)
T ss_dssp             EEEEEEGGGTEEEEEEECCSSS
T ss_pred             eEEEEECCCCEEEEEeCCCCCC
Confidence            888888874 477777754433

>1alq_A CP254 beta-lactamase; hydrolase, circular permuted, antibiotic resistance; 1.80A {Staphylococcus aureus} SCOP: e.3.1.1

Probab=80.69  E-value=1.4  Score=32.71  Aligned_cols=34  Identities=26%  Similarity=0.301  Sum_probs=30.5

Q ss_pred             ccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhh
Q psy8041           3 TTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSC   44 (101)
Q Consensus         3 v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tc   44 (101)
                      .|..|+|++...|+++.        +++++..+.++.+|..+
T Consensus       194 tTa~d~a~l~~~l~~g~--------~ls~~~~~~l~~~m~~~  227 (266)
T 1alq_A          194 STPAAFGKTLNKLIANG--------KLSKENKKFLLDLMLNN  227 (266)
T ss_dssp             ECHHHHHHHHHHHTTSS--------SCCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHcCC--------CCCHHHHHHHHHHHHcC
Confidence            68999999999999875        79999999999999765

>1nrf_A Regulatory protein BLAR1; penicillin-receptor, beta-lactamase induction, penicillin-binding protein, membrane protein; 2.50A {Bacillus licheniformis} SCOP: e.3.1.1

Probab=80.58  E-value=1.5  Score=32.52  Aligned_cols=37  Identities=8%  Similarity=0.033  Sum_probs=32.6

Q ss_pred             CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhh
Q psy8041           1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSC   44 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tc   44 (101)
                      +++|..|+|.+-+.|||+       ++++++++.+.++.+|...
T Consensus       154 ~~~tpl~~a~~~~~i~n~-------~~~~s~~~~~~v~~~m~~v  190 (262)
T 1nrf_A          154 LQISPLEQVNILKKFYDN-------EFDFKQSNIETVKDSIRLE  190 (262)
T ss_dssp             SCBCHHHHHHHHHHHHHT-------TTCCCHHHHHHHHHHHEEE
T ss_pred             hhhCHHHHHHHHHHHhcC-------CCCCCHHHHHHHHHHHHHh
Confidence            368999999999999996       5689999999999999865

>1m40_A TEM-1, beta-lactamase TEM; acylation mechanism, ultra- high resolution, hydrolase; HET: CB4; 0.85A {Escherichia coli} SCOP: e.3.1.1 PDB: 1jwp_A* 1nxy_A* 1ny0_A* 1nym_A* 1nyy_A* 1pzo_A* 1erm_A* 1ero_A* 1erq_A* 1s0w_A 1xpb_A 1li0_A 1htz_A 1jtd_A 1esu_A 1jwz_A* 1li9_A 1jwv_A* 1jtg_A 1axb_A* ...

Probab=80.28  E-value=1.7  Score=30.89  Aligned_cols=35  Identities=20%  Similarity=0.245  Sum_probs=30.3

Q ss_pred             cccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhh
Q psy8041           2 ETTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSC   44 (101)
Q Consensus         2 ~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tc   44 (101)
                      .+|..|+|++...|+|+.        +++++..+.++.+|...
T Consensus       155 ~~T~~d~a~~~~~l~~~~--------~l~~~~~~~~~~~~~~~  189 (263)
T 1m40_A          155 TTTPAAMATTLRKLLTGE--------LLTLASRQQLIDWMEAD  189 (263)
T ss_dssp             EECHHHHHHHHHHHHHST--------TSCHHHHHHHHHHHHCC
T ss_pred             ccCHHHHHHHHHHHHcCC--------CCCHHHHHHHHHHHHhC
Confidence            468999999999999975        58889999999999754

>3udf_A Penicillin-binding protein 1A; transglycosylase, transpeptidase; HET: MES; 1.70A {Acinetobacter baumannii} PDB: 3udi_A* 3udx_A* 3ue0_A* 3ue1_A*

Probab=80.05  E-value=2.1  Score=37.00  Aligned_cols=56  Identities=20%  Similarity=0.307  Sum_probs=34.4

Q ss_pred             ceeechhhHHHHHHHHHhhccccccccceeeec---ceeeccCCc-----eEEEEecCceEEEEEc
Q psy8041          26 EKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVG---LPAKSGVSG-----SMLVVVPNTMGIALFF   83 (101)
Q Consensus        26 e~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VG---lPaKSGVsG-----gIlavvPg~~gIav~S   83 (101)
                      +++++++++..+..+|...= -+..|.-+...|   +=+|+|-+-     =.++..| ..-++||-
T Consensus       623 ~~vis~~tA~~~~~mL~~VV-~~GTg~~a~~~~~~~vAGKTGTt~~~~daWFvGytP-~~~~~Vwv  686 (731)
T 3udf_A          623 QRILKSSSAYDMANILRDVI-EHGTGRAALKIGRSDLGGKTGTTNDAKDAWFAGFNG-KLVTVTWV  686 (731)
T ss_dssp             CBCSCHHHHHHHHHHHHHHH-HHCC------CCCSSCEEEEEECGGGCCEEEEEEET-TEEEEEEE
T ss_pred             CcCCCHHHHHHHHHHHHhhc-cCCchhhcccCCCCeEEEEecCCCCCCCEEEEEECC-CeEEEEEE
Confidence            58999999999999997541 123333333222   348888753     3677778 45788884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	101
d1u60a_	309	e.3.1.2 (A:) Probable glutaminase YbaS {Escherichi	1e-34
d1mkia_	328	e.3.1.2 (A:) Probable glutaminase YbgJ {Bacillus s	3e-31

>d1u60a_ e.3.1.2 (A:) Probable glutaminase YbaS {Escherichia coli [TaxId: 562]} Length = 309

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: Glutaminase
domain: Probable glutaminase YbaS
species: Escherichia coli [TaxId: 562]

 Score =  118 bits (297), Expect = 1e-34
 Identities = 36/82 (43%), Positives = 53/82 (64%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
                   + + ATLA GG+ P+T ++VL++++V  +L+ M   G+Y  SG +A++VGLP
Sbjct: 197 TLLNTIELATLGATLAAGGVNPLTHKRVLQADNVPYILAEMMMEGLYGRSGDWAYRVGLP 256

Query: 61  AKSGVSGSMLVVVPNTMGIALF 82
            KSGV G +L VVP  MGIA F
Sbjct: 257 GKSGVGGGILAVVPGVMGIAAF 278

>d1mkia_ e.3.1.2 (A:) Probable glutaminase YbgJ {Bacillus subtilis [TaxId: 1423]} Length = 328

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: Glutaminase
domain: Probable glutaminase YbgJ
species: Bacillus subtilis [TaxId: 1423]

 Score =  109 bits (275), Expect = 3e-31
 Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 10/92 (10%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           ME+T E  ++I   LA+ G  PI  E+V+  +  +   +LM +CGMY+ SG++A  VG+P
Sbjct: 208 MESTTEDIALIGLILAHDGYHPIRHEQVIPKDVAKLAKALMLTCGMYNASGKYAAFVGVP 267

Query: 61  AKSGVSGSMLVVVP----------NTMGIALF 82
           AKSGVSG ++ +VP          +  GI ++
Sbjct: 268 AKSGVSGGIMALVPPSARREQPFQSGCGIGIY 299

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	101
d1u60a_	309	Probable glutaminase YbaS {Escherichia coli [TaxId	100.0
d1mkia_	328	Probable glutaminase YbgJ {Bacillus subtilis [TaxI	100.0
d1vqqa3	341	Penicillin binding protein 2a (PBP2A), C-terminal	96.92
d2c5wb1	385	Penicillin-binding protein 1a, transpeptidase doma	96.63
d2olua2	400	Penicillin-binding protein 2, PBP2 {Staphylococcus	96.24
d2dcfa1	388	6-aminohexanoate-dimer hydrolase NylC {Flavobacter	93.38
d2bg1a1	453	Penicillin-binding protein 1b, transpeptidase doma	93.17
d1pyya4	368	Penicillin-binding protein 2x (pbp-2x), transpepti	86.94
d1xa1a_	246	Regulatory protein BlaR1 {Staphylococcus aureus [T	86.77
d1nrfa_	246	Penicillin receptor BlaR, C-terminal domain {Bacil	85.12
d1k55a_	245	Class D beta-lactamase {Pseudomonas aeruginosa, OX	84.19

>d1u60a_ e.3.1.2 (A:) Probable glutaminase YbaS {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: Glutaminase
domain: Probable glutaminase YbaS
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.1e-51  Score=323.28  Aligned_cols=97  Identities=38%  Similarity=0.621  Sum_probs=95.0

Q ss_pred             CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceeeecceeeccCCceEEEEecCceEEE
Q psy8041           1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIA   80 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKSGVsGgIlavvPg~~gIa   80 (101)
                      |+|||+|||+||++|||+|+||+|+||+++++++|+++++|+||||||+||+|+|+||+|+|||||||||+||||+||||
T Consensus       197 i~vt~~dlA~~aatLAN~Gv~P~tg~~v~~~~~~r~vls~M~tcGmYd~SG~fa~~VGlPaKSGVgGgIlavvPg~~gIa  276 (309)
T d1u60a_         197 TLLNTIELATLGATLAAGGVNPLTHKRVLQADNVPYILAEMMMEGLYGRSGDWAYRVGLPGKSGVGGGILAVVPGVMGIA  276 (309)
T ss_dssp             EEECHHHHHHHHHHHHTTSEETTTTEECSCGGGHHHHHHHHHHHTTGGGHHHHHHHTCSCEEECTTSEEEEEETTTEEEE
T ss_pred             hhhhHHHHHHHHHHHHcCCcCCCCCCeecCHHHHHHHHHHHHhcCCcccccchhheeCceeecCCCceEEEEeCCceEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCccccccceee
Q psy8041          81 LFFRTTQNVFVLFVGHR   97 (101)
Q Consensus        81 v~SP~LD~~gn~~~~~~   97 (101)
                      ||||+||++|||.+|-.
T Consensus       277 v~SP~LD~~GNSv~G~~  293 (309)
T d1u60a_         277 AFSPPLDEDGNSVRGQK  293 (309)
T ss_dssp             EECSCBCTTSCBHHHHH
T ss_pred             EECCCCCCCCCCHHHHH
Confidence            99999999999999854

>d1mkia_ e.3.1.2 (A:) Probable glutaminase YbgJ {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: Glutaminase
domain: Probable glutaminase YbgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.9e-49  Score=316.15  Aligned_cols=97  Identities=37%  Similarity=0.621  Sum_probs=94.3

Q ss_pred             CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceeeecceeeccCCceEEEEecCc----
Q psy8041           1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNT----   76 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKSGVsGgIlavvPg~----   76 (101)
                      |+|||+|||+||++|||+|+||+|+||+++++++|+++++|+||||||+||+|+|+||+|+|||||||||+|+||+    
T Consensus       208 i~~t~~dLA~~~atLAN~G~~P~t~~~vls~~~~~~v~a~M~TcGmYd~SGefa~~VGlPaKSGVgGgIlavvPg~ggi~  287 (328)
T d1mkia_         208 MESTTEDIALIGLILAHDGYHPIRHEQVIPKDVAKLAKALMLTCGMYNASGKYAAFVGVPAKSGVSGGIMALVPPSARRE  287 (328)
T ss_dssp             BEECHHHHHHHHHHHHTTTEETTTTEECSCHHHHHHHHHHHHHHTTGGGHHHHHHHTCSCEEECTTSEEEEEECTTTTCS
T ss_pred             cccCHHHHHHHHHHHHcCCcCCCCCCeecCHHHHHHHHHHHHhcCCcccccchHHhcCCccccccCCceEEEeCCccccc
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999987    


Q ss_pred             ------eEEEEEcCCCCccccccceee
Q psy8041          77 ------MGIALFFRTTQNVFVLFVGHR   97 (101)
Q Consensus        77 ------~gIav~SP~LD~~gn~~~~~~   97 (101)
                            ||||+|||+||++|||.+|-.
T Consensus       288 ~~vp~~~gIav~SP~LD~~GNSv~G~~  314 (328)
T d1mkia_         288 QPFQSGCGIGIYGPAIDEYGNSLTGGM  314 (328)
T ss_dssp             STTTTCEEEEEECSCBCTTSSBHHHHH
T ss_pred             ccccCceEEEEECCCcCCCCCcHHHHH
Confidence                  799999999999999999854

>d1vqqa3 e.3.1.1 (A:328-668) Penicillin binding protein 2a (PBP2A), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: Penicillin binding protein 2a (PBP2A), C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.92  E-value=0.00068  Score=50.07  Aligned_cols=64  Identities=14%  Similarity=0.146  Sum_probs=49.9

Q ss_pred             CcccHHHHHHHHHHHhCCCC-----------CCCCCceeechhhHHHHHHHHHhhccccccccceeeecce--eeccC
Q psy8041           1 METTCESFSVIAATLANGGI-----------CPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP--AKSGV   65 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~-----------~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlP--aKSGV   65 (101)
                      +.+|.-|||.+.++|||+|+           ++...++++++++++.++..|... +-+..|..++.-|.|  +|+|-
T Consensus       197 ~~vTplqma~aya~iAn~G~~~~P~~i~~i~~~~~~~~~~s~~~~~~v~~~m~~v-v~~gt~~~~~~~~~~vaGKTGT  273 (341)
T d1vqqa3         197 ILINPVQILSIYSALENNGNINAPHLLKDTKNKVWKKNIISKENINLLTDGMQQV-VNKTHKEDIYRSYANLIGKSGT  273 (341)
T ss_dssp             CBBCHHHHHHHHHGGGTTTCEECCBCBTTSCCCEEECCCSCHHHHHHHHHHHHHH-HHTTTTTTTCCTTSCEEEEEEE
T ss_pred             ccccchHHHHHHhhhhcCccccccccceecccccccccccchhhhhhhhhccccc-ccccccccccCCCccceeEEee
Confidence            46899999999999999996           344567889999999999998764 335566666655554  88887

>d2c5wb1 e.3.1.1 (B:266-650) Penicillin-binding protein 1a, transpeptidase domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: Penicillin-binding protein 1a, transpeptidase domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.63  E-value=0.0018  Score=48.89  Aligned_cols=79  Identities=20%  Similarity=0.302  Sum_probs=58.8

Q ss_pred             cccHHHHHHHHHHHhCCCCC--C-----------------CCCceeechhhHHHHHHHHHhhccccccccceeeecce--
Q psy8041           2 ETTCESFSVIAATLANGGIC--P-----------------ITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP--   60 (101)
Q Consensus         2 ~v~~~dLA~~~a~LAn~G~~--p-----------------~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlP--   60 (101)
                      ++|.-|||.+.++|||+|.-  |                 ...++++++++++.+..+|...= -+.+|..++.-|.|  
T Consensus       212 ~~tplqla~aya~iAngG~~~~P~~i~~i~d~~~~~~~~~~~~~~v~s~~~a~~~~~~m~~vv-~~GT~~~a~~~~~~va  290 (385)
T d2c5wb1         212 GASSEKMAAAYAAFANGGTYYKPMYIHKVVFSDGSEKEFSNVGTRAMKETTAYMMTDMMKTVL-TYGTGRNAYLAWLPQA  290 (385)
T ss_dssp             SCCHHHHHHHHHHHHTTSEEECCBSEEEEEETTSCEEECCCCEEECSCHHHHHHHHHHHHHHH-HHSTTGGGCCTTCCCE
T ss_pred             ccCHHHHHHHHHhhccCccccceeeecccccccccccccccccccccCHHHHHHHHhhhhccc-cCCccccccccccccc
Confidence            57899999999999999983  3                 23467799999999999997552 24566667666666  


Q ss_pred             eeccCC--------------------ceEEEEecCceEEEEE
Q psy8041          61 AKSGVS--------------------GSMLVVVPNTMGIALF   82 (101)
Q Consensus        61 aKSGVs--------------------GgIlavvPg~~gIav~   82 (101)
                      +|+|-+                    +=.++.-|. ..++||
T Consensus       291 GKTGTaq~~~~~~~~~~~~~~~~~~d~WFvG~~P~-~~~~Vw  331 (385)
T d2c5wb1         291 GKTGTSNYTDEEIENHIKTSQFVAPDELFAGYTRK-YSMAVW  331 (385)
T ss_dssp             EEEEECCCCHHHHHHTCCCSSCEESCEEEEEECSS-EEEEEE
T ss_pred             eeecccccccccccccccccccccceeEEEecCCC-EEEEEE
Confidence            899975                    226666664 477787

>d2olua2 e.3.1.1 (A:293-692) Penicillin-binding protein 2, PBP2 {Staphylococcus aureus [TaxId: 1280]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: Penicillin-binding protein 2, PBP2
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.24  E-value=0.0034  Score=47.67  Aligned_cols=82  Identities=17%  Similarity=0.129  Sum_probs=57.8

Q ss_pred             CcccHHHHHHHHHHHhCCCC-------------------CCCCCceeechhhHHHHHHHHHhhccccccccceeeec--c
Q psy8041           1 METTCESFSVIAATLANGGI-------------------CPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVG--L   59 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~-------------------~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VG--l   59 (101)
                      +++|.-|||.+.++|||+|+                   .+...+|++++++++.+..+|...---..++..+.--|  +
T Consensus       209 ~~vtplqlA~aya~iANgG~~~~P~~v~~i~~~~g~~v~~~~~~~~v~s~~~a~~l~~~l~~vv~~~Gt~~~~~~~g~~v  288 (400)
T d2olua2         209 SEFSPTQLASAFAAIANGGTYNNAHSIQKVVTRDGETIEYDHTSHKAMSDYTAYMLAEMLKGTFKPYGSAYGHGVSGVNM  288 (400)
T ss_dssp             CEECHHHHHHHHHHHHTTSEEECCBCEEEEECTTSCEEECCCCEEECSCHHHHHHHHHHHHGGGSTTSTTTTCCCSSCCC
T ss_pred             ccCCHHHhhhcccceecCceEEEeEeccccccccccccccccccccchhHHHHHHHHhhhccccccccchhhcccCCceE
Confidence            46899999999999999995                   23355788999999999998875422223444443333  4


Q ss_pred             eeeccCCc-------------------eEEEEecCceEEEEEc
Q psy8041          60 PAKSGVSG-------------------SMLVVVPNTMGIALFF   83 (101)
Q Consensus        60 PaKSGVsG-------------------gIlavvPg~~gIav~S   83 (101)
                      .+|+|.+=                   =.++..|. ..++||-
T Consensus       289 agKTGTa~~~~~~~~~~~~~~~~~~daWFvG~~P~-~~~~Vwv  330 (400)
T d2olua2         289 GAKTGTGTYGAETYSQYNLPDNAAKDVWINGFTPQ-YTMSVWM  330 (400)
T ss_dssp             EEEEEEECCCHHHHHHTTCCTTEESEEEEEEECSS-EEEEEEE
T ss_pred             EEeecccccCccCccccccccCCcceEEEEEecCC-eEEEEEE
Confidence            58998731                   16777774 5888885

>d2dcfa1 e.3.1.1 (A:5-392) 6-aminohexanoate-dimer hydrolase NylC {Flavobacterium sp. [TaxId: 239]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: 6-aminohexanoate-dimer hydrolase NylC
species: Flavobacterium sp. [TaxId: 239]

Probab=93.38  E-value=0.034  Score=41.56  Aligned_cols=80  Identities=21%  Similarity=0.239  Sum_probs=52.2

Q ss_pred             cccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhcccc-----cccccee-----eecce----eeccCCc
Q psy8041           2 ETTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYD-----YSGQFAF-----KVGLP----AKSGVSG   67 (101)
Q Consensus         2 ~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd-----~SG~fa~-----~VGlP----aKSGVsG   67 (101)
                      ..|.+|+|+++..+.|+|.  +.|+|+|+++.++...+--....+.+     ...++.|     ..+-|    ..+|..|
T Consensus       266 ~~tarDlarfg~l~l~~G~--~~g~qils~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Yg~~ww~~~~~~~~~~~~G~~G  343 (388)
T d2dcfa1         266 SCTARDLARVGRMMLDGGV--APGGRVVSEDWVRRVLAGGSHEAMTDKGFTNTFPDGSYTRQWWCTGNERGNVSGIGIHG  343 (388)
T ss_dssp             EECHHHHHHHHHHHHTTTE--ETTEECSCHHHHHHHHHCCCTTTCCCHHHHHHCTTCEEETTEEECCCTTCCEEEEETTT
T ss_pred             hhcccchhHHHHHHHhCCc--cCCcccchHHHHHHHhcCCCcccccccccccCCCCCCCCcceeecCCCCCcEEEECCCC
Confidence            4689999999999999996  47999999998887654211111111     0011111     12222    4568899


Q ss_pred             eEEEEecCc-eEEEEEc
Q psy8041          68 SMLVVVPNT-MGIALFF   83 (101)
Q Consensus        68 gIlavvPg~-~gIav~S   83 (101)
                      -.+-|.|.. +.|..+|
T Consensus       344 Q~i~vdP~~~lvIV~ls  360 (388)
T d2dcfa1         344 QNLWLDPLTDSVIVKLS  360 (388)
T ss_dssp             EEEEEEGGGTEEEEEEE
T ss_pred             cEEEEEecCCEEEEEeC
Confidence            888899985 4666676

>d2bg1a1 e.3.1.1 (A:337-789) Penicillin-binding protein 1b, transpeptidase domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: Penicillin-binding protein 1b, transpeptidase domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.17  E-value=0.061  Score=41.42  Aligned_cols=81  Identities=15%  Similarity=0.164  Sum_probs=52.1

Q ss_pred             CcccHHHHHHHHHHHhCCCCC--C------------------CCCceeechhhHHHHHHHHHhhcccccccc--------
Q psy8041           1 METTCESFSVIAATLANGGIC--P------------------ITEEKVLRSESVRDVLSLMHSCGMYDYSGQ--------   52 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~--p------------------~tge~vl~~~~~r~v~alM~tcGmYd~SG~--------   52 (101)
                      +++|.-|||.+.++|||+|+-  |                  ...+|+++++++..+..+|...=- +..|.        
T Consensus       224 ~~vTplqma~ayatiAN~G~~~~P~~i~~i~d~~G~vi~~~~~~~~~vis~~ta~~~~~~L~~VV~-~Gtg~~~~~~~~~  302 (453)
T d2bg1a1         224 IEVTVAQHTNGYQTLANNGVYHQKHVISKIEAADGRVVYEYQDKPVQVYSKATATIMQGLLREVLS-SRVTTTFKSNLTS  302 (453)
T ss_dssp             CCBCHHHHHHHHHHHHTTTEECCCBSEEEEECTTSCEEEECCCCCEECSCHHHHHHHHHHHHHHHH-TCSSCCHHHHHHH
T ss_pred             ccceehhhhccccccccCCccccccccccccccccccchhccccccccCCHHHHHHHhhhhhhhcc-ccccceeeccccc
Confidence            478999999999999999952  2                  234678999999999999875310 11111        


Q ss_pred             -ceeeecce--eeccCCc-----eEEEEecCceEEEEEc
Q psy8041          53 -FAFKVGLP--AKSGVSG-----SMLVVVPNTMGIALFF   83 (101)
Q Consensus        53 -fa~~VGlP--aKSGVsG-----gIlavvPg~~gIav~S   83 (101)
                       .+.-.|.|  +|+|-+-     =.++.-|. ..++||-
T Consensus       303 ~~~~~~~~~vAGKTGTt~~~~DaWFvGytp~-~~~~Vwv  340 (453)
T d2bg1a1         303 LNPTLANADWIGKTGTTNQDENMWLMLSTPR-LTLGGWI  340 (453)
T ss_dssp             HCHHHHTSCCEEEEECCTTCSEEEEEEECSS-EEEEEEE
T ss_pred             cccccCCCcccccccCCCCCeeeEEEecCCC-eEEEEEE
Confidence             11111222  6888653     25555664 4777875

>d1pyya4 e.3.1.1 (A:264-631) Penicillin-binding protein 2x (pbp-2x), transpeptidase domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: Penicillin-binding protein 2x (pbp-2x), transpeptidase domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=86.94  E-value=0.37  Score=35.15  Aligned_cols=46  Identities=15%  Similarity=0.133  Sum_probs=34.1

Q ss_pred             CcccHHHHHHHHHHHhCCCC--CCCC-------------------CceeechhhHHHHHHHHHhhcc
Q psy8041           1 METTCESFSVIAATLANGGI--CPIT-------------------EEKVLRSESVRDVLSLMHSCGM   46 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~--~p~t-------------------ge~vl~~~~~r~v~alM~tcGm   46 (101)
                      +++|.-|||.+.++|||+|+  .|.-                   -.+.++++....+...|....+
T Consensus       191 ~~~tplq~a~aya~iANgG~~~~P~~i~~i~d~~g~~~~~~~~~~~~~~i~~~~~~~~~~~m~~~v~  257 (368)
T d1pyya4         191 ISVTQTQMIRAFTAIANDGVMLEPKFISAIYDPNDQTARKSQKEIVGNPVSKDAASLTRTNMVLVGT  257 (368)
T ss_dssp             CBBCHHHHHHHHHHHHTTTCEECCBCEEEEEEGGGTEEEECCCCEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHhHHHHHhcCCcccccEEEEEEecCCcceecccccccccccccHHHHHHHHHHHHHhhh
Confidence            46889999999999999997  3321                   1234677888888888876543

>d1xa1a_ e.3.1.1 (A:) Regulatory protein BlaR1 {Staphylococcus aureus [TaxId: 1280]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: Regulatory protein BlaR1
species: Staphylococcus aureus [TaxId: 1280]

Probab=86.77  E-value=0.36  Score=33.72  Aligned_cols=37  Identities=3%  Similarity=-0.013  Sum_probs=30.1

Q ss_pred             CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhh
Q psy8041           1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSC   44 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tc   44 (101)
                      +++|..|+|.+.++|||+|.       .+++++++.+..+|...
T Consensus       143 ~~vTPlq~a~~~~~ian~g~-------~~sp~~~~~~~~~m~~~  179 (246)
T d1xa1a_         143 LKISNLEQVIVFKNMMEQNN-------HFSKKAKNQLSSSLLIK  179 (246)
T ss_dssp             CCEEHHHHHHHHHHHHC--C-------CSCHHHHHHHHHHHEEE
T ss_pred             ccccHHHHHHHHHHHHcCCC-------CCCHHHHHHHHHHHHHH
Confidence            46889999999999999984       37999999999999653

>d1nrfa_ e.3.1.1 (A:) Penicillin receptor BlaR, C-terminal domain {Bacillus licheniformis [TaxId: 1402]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: Penicillin receptor BlaR, C-terminal domain
species: Bacillus licheniformis [TaxId: 1402]

Probab=85.12  E-value=0.45  Score=33.34  Aligned_cols=36  Identities=6%  Similarity=0.061  Sum_probs=31.5

Q ss_pred             CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHh
Q psy8041           1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHS   43 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~t   43 (101)
                      +++|..|+|.+.+++||+|.       .++++.++.+...|..
T Consensus       142 ~~~TPlq~a~~~~~ian~G~-------~~~~~~~~~i~~~m~~  177 (246)
T d1nrfa_         142 LQISPLEQVNILKKFYDNEF-------DFKQSNIETVKDSIRL  177 (246)
T ss_dssp             SCBCHHHHHHHHHHHHHTTT-------CCCHHHHHHHHHHHEE
T ss_pred             cccCHHHHHHHHHHHHcCCC-------cCChHHHHHHHHHHhh
Confidence            46899999999999999995       4789999999998864

>d1k55a_ e.3.1.1 (A:) Class D beta-lactamase {Pseudomonas aeruginosa, OXA-10 [TaxId: 287]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: Class D beta-lactamase
species: Pseudomonas aeruginosa, OXA-10 [TaxId: 287]

Probab=84.19  E-value=0.56  Score=32.79  Aligned_cols=36  Identities=8%  Similarity=-0.020  Sum_probs=31.1

Q ss_pred             CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHh
Q psy8041           1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHS   43 (101)
Q Consensus         1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~t   43 (101)
                      +++|..|+|.+.++|||+|.       .+++++++.+..+|..
T Consensus       139 ~~itplq~a~~~~~ian~g~-------~~~~~~~~~~~~~m~~  174 (245)
T d1k55a_         139 LRISAVNQVEFLESLYLNKL-------SASKENQLIVKEALVT  174 (245)
T ss_dssp             CCBCHHHHHHHHHHHHTTCS-------SSCHHHHHHHHHHTEE
T ss_pred             ccccHHHHHHHHHHHHcCCc-------ccCHhHHHHHHHHHHH
Confidence            46899999999999999985       4789999999988854