Psyllid ID: psy8042

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90
Protein Sequence
ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHHAINSCPEDLVKTLSKSFILDLIGWQRSFSDLVKWIRLPMTNWISPTFHVPIGIED
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEEEccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccEEEEccccccccccEEccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHcccccccccEEEEEEccHHHHHHHHHHcccccccccccccccHHHHHHHHcHHHHcccHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
isgtaaklgrpssyhhCTLLVNVNKSRLSQSLHHHAINSCPEDLVKTLSKSFILDLIGWQRSFSDLVKWIRlpmtnwisptfhvpigied
Flexible Loop (DISEMBL)
isgtaaklgrpssyhHCTLLVNVNKSRLSQSLHHHAINSCPEDLVKTLSKSFILDLIGWQRSFSDLVKWIRLPmtnwisptfhvpigied
Low Complexity Region (SEG)
ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHHAINSCPEDLVKTLSKSFILDLIGWQRSFSDLVKWIRLPMTNWISPTFHVPIGIED
Disordered region (IsUnstruct)
*************YHHCTLLVNVNKSRLSQSLHHHAINSCPEDLVKTLSKSFILDLIGWQRSFSDLVKWIRLPMTNWISPTFHVPIG***
Disordered Region (DISOPRED)
*SGTAAKLGRPSSYHHCTLLVNVNKSRLSQSL***************LSKSFILDLIGWQRSFSDLVKWIRLPMTNWISPTFHVPIGIE*
Disordered Region (DISEMBL)
**********PSSYHHCTLLVNVNKSRLSQSLHHHAINSCPEDLVKTLSKSFILDLIGWQRSFSDLVKWIRLPMTNWISPTFHVPIGIED
Disordered Region (DISPRO)
*****AKLGRPSSYHHCTLLVNVNKSRLSQSLHHHAINSCPEDLVKTLSKSFILDLIGWQRSFSDLVKWIRLPMTNWISPTFHVPIGIED
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHHAINSCPEDLVKTLSKSFILDLIGWQRSFSDLVKWIRLPMTNWISPTFHVPIGIED
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	90	2.2.26 [Sep-21-2011]
Q8VCM4	373	Lipoyltransferase 1, mito	yes	N/A	0.355	0.085	0.625	5e-05

>sp|Q8VCM4|LIPT_MOUSE Lipoyltransferase 1, mitochondrial OS=Mus musculus GN=Lipt1 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 27/32 (84%)

Query: 1   ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSL 32
           ISGTA+K+GR ++YHHCTLL + N++ LS SL
Sbjct: 162 ISGTASKIGRTAAYHHCTLLCSTNRTALSSSL 193

Catalyzes the transfer of the lipoyl group from lipoyl-AMP to the specific lysine residue of lipoyl domains of lipoate-dependent enzymes.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
350417636	412	PREDICTED: lipoyltransferase 1, mitochon	0.355	0.077	0.812	8e-07
340712273	395	PREDICTED: lipoyltransferase 1, mitochon	0.355	0.081	0.812	8e-07
91093875	389	PREDICTED: similar to GA21085-PA isoform	0.6	0.138	0.553	9e-07
332024970	400	Lipoyltransferase 1, mitochondrial [Acro	0.666	0.15	0.438	1e-06
242016690	361	lipoyltransferase 1, putative [Pediculus	0.666	0.166	0.424	2e-06
383857102	393	PREDICTED: lipoyltransferase 1, mitochon	0.355	0.081	0.781	2e-06
198419279	321	PREDICTED: similar to Lipoyltransferase	0.422	0.118	0.657	3e-06
380014012	395	PREDICTED: lipoyltransferase 1, mitochon	0.355	0.081	0.781	3e-06
328787381	400	PREDICTED: lipoyltransferase 1, mitochon	0.355	0.08	0.781	4e-06
385845164	393	lipoate protein ligase [Phyllotreta stri	0.755	0.173	0.388	4e-06

>gi|350417636|ref|XP_003491519.1| PREDICTED: lipoyltransferase 1, mitochondrial-like [Bombus impatiens]

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/32 (81%), Positives = 30/32 (93%)

Query: 1   ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSL 32
           ISGTAAKLGRP++YHHCTLLVNVNK+ LS +L
Sbjct: 190 ISGTAAKLGRPNAYHHCTLLVNVNKTALSLAL 221

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712273|ref|XP_003394686.1| PREDICTED: lipoyltransferase 1, mitochondrial-like [Bombus terrestris]

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/32 (81%), Positives = 30/32 (93%)

Query: 1   ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSL 32
           ISGTAAKLGRP++YHHCTLLVNVNK+ LS +L
Sbjct: 173 ISGTAAKLGRPNAYHHCTLLVNVNKTALSLAL 204

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91093875|ref|XP_975811.1| PREDICTED: similar to GA21085-PA isoform 2 [Tribolium castaneum] gi|270014513|gb|EFA10961.1| hypothetical protein TcasGA2_TC004121 [Tribolium castaneum]

 Score = 57.4 bits (137), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 38/56 (67%), Gaps = 2/56 (3%)

Query: 1   ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHHAINSCPEDLVKTLSKSFILDL 56
           +SGTAAKLGRPS+YHHCTLLVN NK  LS++L    +    E      +KS IL+L
Sbjct: 164 VSGTAAKLGRPSAYHHCTLLVNTNKVHLSEALQKSDVGI--ETNATKSTKSKILNL 217

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024970|gb|EGI65157.1| Lipoyltransferase 1, mitochondrial [Acromyrmex echinatior]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 13/73 (17%)

Query: 1   ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH----------AINSCPEDLV---KT 47
           ISGTAAKLG+P++YHHCTLLVNVNK+ LS  L             +I S   +L+   + 
Sbjct: 175 ISGTAAKLGKPNAYHHCTLLVNVNKANLSSILERKENGIVTNATTSIRSPTMNLIDVNRN 234

Query: 48  LSKSFILDLIGWQ 60
           +    +L  IGW+
Sbjct: 235 IQMDKLLSAIGWE 247

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242016690|ref|XP_002428883.1| lipoyltransferase 1, putative [Pediculus humanus corporis] gi|212513647|gb|EEB16145.1| lipoyltransferase 1, putative [Pediculus humanus corporis]

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 13/73 (17%)

Query: 1   ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH-------HAINSCPE------DLVKT 47
           +SGTA+KLGRP++YHHCTLL+N NK  L QSL+        +A  S P       D    
Sbjct: 143 VSGTASKLGRPNAYHHCTLLINANKLNLKQSLNANRDGFETNATKSVPSHTKNLADNNDN 202

Query: 48  LSKSFILDLIGWQ 60
           ++   +L+ IGW+
Sbjct: 203 INFERLLNAIGWE 215

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857102|ref|XP_003704045.1| PREDICTED: lipoyltransferase 1, mitochondrial-like [Megachile rotundata]

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/32 (78%), Positives = 30/32 (93%)

Query: 1   ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSL 32
           ISGTAAKLGRP++YHHCTLLV+VNK+ LS +L
Sbjct: 171 ISGTAAKLGRPNAYHHCTLLVDVNKTALSLAL 202

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198419279|ref|XP_002129038.1| PREDICTED: similar to Lipoyltransferase 1 [Ciona intestinalis]

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/38 (65%), Positives = 31/38 (81%)

Query: 1   ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHHAIN 38
           ISGTAA+LGR S YHHCTLLV+ NKS L++ LH + +N
Sbjct: 155 ISGTAARLGRRSCYHHCTLLVSTNKSNLTKYLHPNKLN 192

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|380014012|ref|XP_003691038.1| PREDICTED: lipoyltransferase 1, mitochondrial-like [Apis florea]

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query: 1   ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSL 32
           ISGTAAKLGRP++YHHCTLLVNVNK+ L  +L
Sbjct: 173 ISGTAAKLGRPNAYHHCTLLVNVNKTALYLAL 204

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328787381|ref|XP_624104.3| PREDICTED: lipoyltransferase 1, mitochondrial-like isoform 2 [Apis mellifera]

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query: 1   ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSL 32
           ISGTAAKLGRP++YHHCTLLVNVNK+ L  +L
Sbjct: 178 ISGTAAKLGRPNAYHHCTLLVNVNKTALYLAL 209

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|385845164|gb|AFI81409.1| lipoate protein ligase [Phyllotreta striolata]

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 17/85 (20%)

Query: 1   ISGTAAKLGRPSSYHHCTLLVNVNKSRLS---------------QSLHHHAINSCPEDLV 45
           +SGTAAKLGR ++YHHCTLLVNVNK  LS               +S+    IN C E+  
Sbjct: 167 VSGTAAKLGRTAAYHHCTLLVNVNKVDLSLALQKPEVDIKTTATKSVKSKIINLCEEN-- 224

Query: 46  KTLSKSFILDLIGWQRSFSDLVKWI 70
             +    ++  +GW+   +D +K I
Sbjct: 225 PRVEMKNLMKAVGWEYMRTDPLKLI 249

Source: Phyllotreta striolata

Species: Phyllotreta striolata

Genus: Phyllotreta

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
MGI|MGI:3645211	373	Lipt1 "lipoyltransferase 1" [M	0.355	0.085	0.625	5.5e-08
RGD|1310276	371	Lipt1 "lipoyltransferase 1" [R	0.433	0.105	0.536	1.1e-07
UNIPROTKB|E1BVP4	373	LIPT1 "Uncharacterized protein	0.355	0.085	0.718	4e-06
ZFIN|ZDB-GENE-060929-112	401	lipt1 "lipoyltransferase 1" [D	0.355	0.079	0.718	4.5e-06
UNIPROTKB|E2RPI5	381	LIPT1 "Uncharacterized protein	0.588	0.139	0.418	8.8e-06
UNIPROTKB|C9JUU5	251	LIPT1 "Lipoyltransferase 1, mi	0.522	0.187	0.454	0.00011
UNIPROTKB|Q9Y234	373	LIPT1 "Lipoyltransferase 1, mi	0.522	0.126	0.454	0.00022
UNIPROTKB|O46419	373	LIPT1 "Lipoyltransferase 1, mi	0.522	0.126	0.454	0.00046

MGI|MGI:3645211 Lipt1 "lipoyltransferase 1" [Mus musculus (taxid:10090)]

 Score = 112 (44.5 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
 Identities = 20/32 (62%), Positives = 27/32 (84%)

Query:     1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSL 32
             ISGTA+K+GR ++YHHCTLL + N++ LS SL
Sbjct:   162 ISGTASKIGRTAAYHHCTLLCSTNRTALSSSL 193

GO:0003674 "molecular_function" evidence=ND

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009249 "protein lipoylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

RGD|1310276 Lipt1 "lipoyltransferase 1" [Rattus norvegicus (taxid:10116)]

 Score = 113 (44.8 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
 Identities = 22/41 (53%), Positives = 31/41 (75%)

Query:     1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLH--HHAINS 39
             ISGTA+K+GR ++YHHCTLL + +++ LS SL   +H I S
Sbjct:   162 ISGTASKIGRTAAYHHCTLLCSTDRTALSSSLKSPYHGIKS 202

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0009249 "protein lipoylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|E1BVP4 LIPT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 114 (45.2 bits), Expect = 4.0e-06, P = 4.0e-06
 Identities = 23/32 (71%), Positives = 25/32 (78%)

Query:     1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSL 32
             ISGTAAKLGR ++YHHCTLL N NK  LS  L
Sbjct:   162 ISGTAAKLGRTTAYHHCTLLCNANKVVLSSVL 193

GO:0009249 "protein lipoylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-060929-112 lipt1 "lipoyltransferase 1" [Danio rerio (taxid:7955)]

 Score = 114 (45.2 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 23/32 (71%), Positives = 27/32 (84%)

Query:     1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSL 32
             ISGTAAKLGR S+YHHCTLL +V++S LS  L
Sbjct:   193 ISGTAAKLGRSSAYHHCTLLCSVDRSVLSSVL 224

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0009249 "protein lipoylation" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E2RPI5 LIPT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 111 (44.1 bits), Expect = 8.8e-06, P = 8.8e-06
 Identities = 23/55 (41%), Positives = 36/55 (65%)

Query:     1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLH--HHAINSCPEDLVKTLSKSFI 53
             ISGTA+K+GR ++YHHCTLL + N++ LS SL   +  I S     + ++ K+ +
Sbjct:   170 ISGTASKIGRTTAYHHCTLLCSTNRTFLSSSLKSPYQGIRSNATTSIPSIVKNLL 224

GO:0005739 "mitochondrion" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0009249 "protein lipoylation" evidence=IEA

UNIPROTKB|C9JUU5 LIPT1 "Lipoyltransferase 1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 98 (39.6 bits), Expect = 0.00011, P = 0.00011
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query:     1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLS-------QSLHHHAINSCPEDLVKTL 48
             ISGTA+K+GR ++YHHCTLL + + + LS       Q +  +A  S P  LVK L
Sbjct:   162 ISGTASKIGRTTAYHHCTLLCSTDGTFLSSLLKSPYQGIRSNATASIPS-LVKNL 215

GO:0003824 "catalytic activity" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q9Y234 LIPT1 "Lipoyltransferase 1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 98 (39.6 bits), Expect = 0.00022, P = 0.00022
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query:     1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLS-------QSLHHHAINSCPEDLVKTL 48
             ISGTA+K+GR ++YHHCTLL + + + LS       Q +  +A  S P  LVK L
Sbjct:   162 ISGTASKIGRTTAYHHCTLLCSTDGTFLSSLLKSPYQGIRSNATASIPS-LVKNL 215

GO:0009249 "protein lipoylation" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=TAS

UNIPROTKB|O46419 LIPT1 "Lipoyltransferase 1, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 95 (38.5 bits), Expect = 0.00046, P = 0.00046
 Identities = 25/55 (45%), Positives = 33/55 (60%)

Query:     1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLS-------QSLHHHAINSCPEDLVKTL 48
             ISGTA+K+GR ++YHHCTLL   + + LS       Q +  +A  S P  LVK L
Sbjct:   162 ISGTASKIGRNAAYHHCTLLCGTDGTFLSSLLKSPYQGIRSNATASTPA-LVKNL 215


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       90        90   0.00091  102 3  11 22  0.46    29
                                                     29  0.39    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  571 (61 KB)
  Total size of DFA:  123 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.57u 0.08s 10.65t   Elapsed:  00:00:02
  Total cpu time:  10.58u 0.08s 10.66t   Elapsed:  00:00:02
  Start:  Thu Aug 15 11:07:48 2013   End:  Thu Aug 15 11:07:50 2013

GO:0005739 "mitochondrion" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0009249 "protein lipoylation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	90
KOG3159|consensus	336		99.42
PRK03822	338	lplA lipoate-protein ligase A; Provisional	99.35
PRK14061	562	unknown domain/lipoate-protein ligase A fusion pro	99.29
TIGR00545	324	lipoyltrans lipoyltransferase and lipoate-protein	99.21
COG0095	248	LplA Lipoate-protein ligase A [Coenzyme metabolism	98.9
PF13124	40	DUF3963: Protein of unknown function (DUF3963)	87.24

>KOG3159|consensus

Probab=99.42  E-value=9.1e-14  Score=112.27  Aligned_cols=50  Identities=44%  Similarity=0.642  Sum_probs=43.1

Q ss_pred             CcccceeccCCeeeEeeeeeeecChHHHhhhccC-------CccCcCCcchHHHHHH
Q psy8042           1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH-------HAINSCPEDLVKTLSK   50 (90)
Q Consensus         1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~-------N~~~svp~~tVenL~e   50 (90)
                      ||||||||+|++||||||||+|+|++.|+.+|+|       +.+.++|+-.|+++.+
T Consensus       142 iSGtA~kI~r~raYHH~T~L~~aDl~~ls~lL~sp~~~~~s~at~sv~sp~vk~lie  198 (336)
T KOG3159|consen  142 ISGTAYKIARNRAYHHCTMLLNADLENLSELLKSPRVNIRSKATSSVRSPRVKNLIE  198 (336)
T ss_pred             eccchhhhcCCceeeeEEeEeccchHHHHhhccCCCCCccccccccccchhhhhhhh
Confidence            7999999999999999999999999999999998       5667777545666643

>PRK03822 lplA lipoate-protein ligase A; Provisional

Probab=99.35  E-value=7.6e-13  Score=104.72  Aligned_cols=56  Identities=25%  Similarity=0.370  Sum_probs=47.9

Q ss_pred             CcccceeccCCeeeEeeeeeeecChHHHhhhccC------------------CccCcCCcchHHHHHHHHHHHH
Q psy8042           1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH------------------HAINSCPEDLVKTLSKSFILDL   56 (90)
Q Consensus         1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~------------------N~~~svp~~tVenL~e~l~~df   56 (90)
                      ||||||+..+++.|||||||+|+|++.|.++|++                  |+++.+|+++++++++.+.+.|
T Consensus       135 isGsAq~~~~~~~l~HGTlL~~~d~~~l~~~L~~~~~k~~skgv~Sv~srVtnl~~~~~~~~~e~~~~~l~~~f  208 (338)
T PRK03822        135 VSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLQAKGITSVRSRVTNLTELLPGITHEQVCEAITEAF  208 (338)
T ss_pred             EEEEeeeeeCCeEEEEEEEEecCCHHHHHHHhCCChhhhhhccccchHhhhccHHHhCCCCCHHHHHHHHHHHH
Confidence            7999999999999999999999999999999997                  4455556677777777777766

>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional

Probab=99.29  E-value=2.3e-12  Score=109.05  Aligned_cols=56  Identities=25%  Similarity=0.364  Sum_probs=49.7

Q ss_pred             CcccceeccCCeeeEeeeeeeecChHHHhhhccC------------------CccCcCCcchHHHHHHHHHHHH
Q psy8042           1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH------------------HAINSCPEDLVKTLSKSFILDL   56 (90)
Q Consensus         1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~------------------N~~~svp~~tVenL~e~l~~df   56 (90)
                      |||||+++.++++|||||||+|+|++.|.++|+|                  |++++.|+++++++++.+.+.|
T Consensus       359 ISGsAq~~~~~~~lhHGTLL~d~dl~~L~~~L~~~~~Kl~sKgvkSVrsRVtNL~e~l~~it~e~f~~~L~~~f  432 (562)
T PRK14061        359 VSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGIPHEQVCEAITEAF  432 (562)
T ss_pred             EEEEeEEEeCCeEEEEEEEEecCCHHHHHHHhCCCchhhhhhhhhhHHhhceeHHHhCCCCCHHHHHHHHHHHH
Confidence            7999999999999999999999999999999998                  4566666677888888887777

>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase

Probab=99.21  E-value=1.3e-11  Score=96.80  Aligned_cols=58  Identities=22%  Similarity=0.351  Sum_probs=49.4

Q ss_pred             CcccceeccCCeeeEeeeeeeecChHHHhhhccC------------------CccCcCCcchHHHHHHHHHHHHHH
Q psy8042           1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH------------------HAINSCPEDLVKTLSKSFILDLIG   58 (90)
Q Consensus         1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~------------------N~~~svp~~tVenL~e~l~~df~~   58 (90)
                      |||||++..+++.+||||||+|+|++.|.++|++                  |+++..|+++++++.+.+++.|..
T Consensus       133 isGsAq~~~~~~~l~HGtlL~~~d~~~l~~~L~~~~~k~~skgv~sv~~rv~nl~~~l~~~~~e~~~~~l~~~f~~  208 (324)
T TIGR00545       133 ISGSAYYITKDRGFHHGTLLFDADLSKLAKYLNVDKTKIESKGITSVRSRVVNVKEYLPNITTEQFLEEMTQAFFT  208 (324)
T ss_pred             EEEEeeeeeCCEEEEEEEEEccCCHHHHHHhcCCChhhhHhhcccchhhhcccHHHhCCCCCHHHHHHHHHHHHHh
Confidence            6999999999999999999999999999999997                  455556666788888887776643

One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus.

>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism]

Probab=98.90  E-value=1.3e-09  Score=82.15  Aligned_cols=34  Identities=32%  Similarity=0.480  Sum_probs=33.2

Q ss_pred             CcccceeccCCeeeEeeeeeeecChHHHhhhccC
Q psy8042           1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH   34 (90)
Q Consensus         1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~   34 (90)
                      |||+||+..+++.+||||||++.|++.|.++|++
T Consensus       138 isG~Aq~~~~~~~l~hgtll~~~d~~~l~~~l~~  171 (248)
T COG0095         138 ISGSAQRRTKGRILHHGTLLLDIDLELLARVLRV  171 (248)
T ss_pred             EeeHHHHhhCCcEEEEEEEEEeCCHHHHHHHhCC
Confidence            7999999999999999999999999999999997

>PF13124 DUF3963: Protein of unknown function (DUF3963)

Probab=87.24  E-value=0.42  Score=28.80  Aligned_cols=12  Identities=58%  Similarity=1.223  Sum_probs=11.0

Q ss_pred             HHhHHHHHHhhh
Q psy8042          60 QRSFSDLVKWIR   71 (90)
Q Consensus        60 ~~~f~d~~~~~~   71 (90)
                      .+.|+|+-||||
T Consensus        10 eryfddiqkwir   21 (40)
T PF13124_consen   10 ERYFDDIQKWIR   21 (40)
T ss_pred             HHHHHHHHHHHH
Confidence            578999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	90
2e5a_A	347	Crystal Structure Of Bovine Lipoyltransferase In Co		1e-04

>pdb|2E5A|A Chain A, Crystal Structure Of Bovine Lipoyltransferase In Complex With Lipoyl-Amp Length = 347

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 8/55 (14%)
Query: 1   ISGTAAKLGRPSSYHHCTLLVNVNKSRLS-------QSLHHHAINSCPEDLVKTL 48
           ISGTA+K+GR ++YHHCTLL   + + LS       Q +  +A  S P  LVK L
Sbjct: 136 ISGTASKIGRNAAYHHCTLLCGTDGTFLSSLLKSPYQGIRSNATASTPA-LVKNL 189

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	90
2c8m_A	262	Lipoate-protein ligase A; lipoylation; HET: LPA; 1	2e-08
3a7r_A	337	Lipoate-protein ligase A; adenylate-forming enzyme	4e-07
2e5a_A	347	Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ;	6e-06
1vqz_A	341	Lipoate-protein ligase, putative; class II AARS an	3e-05

>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A Length = 262

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 1   ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLH 33
           I G A  + + +   H  +LV+ +   LS  L 
Sbjct: 146 IMGAAGAMRKGAKLWHAAMLVHTDLDMLSAVLK 178

>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* Length = 337

 Score = 44.8 bits (106), Expect = 4e-07
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 1   ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH 35
           +SG+A +  +   +HH TLL+N + SRL+  L+  
Sbjct: 134 VSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPD 168

>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A Length = 347

 Score = 41.5 bits (97), Expect = 6e-06
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query: 1   ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH 35
           ISGTA+K+GR ++YHHCTLL   + + LS  L   
Sbjct: 136 ISGTASKIGRNAAYHHCTLLCGTDGTFLSSLLKSP 170

>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3 Length = 341

 Score = 39.7 bits (93), Expect = 3e-05
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 1   ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH 35
             G A         HH  LL +V+ S L+ +L   
Sbjct: 143 FCGNAQAYINGRIMHHGCLLFDVDLSVLANALKVS 177

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	90
2e5a_A	347	Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ;	99.01
3a7r_A	337	Lipoate-protein ligase A; adenylate-forming enzyme	99.0
2c8m_A	262	Lipoate-protein ligase A; lipoylation; HET: LPA; 1	98.9
1vqz_A	341	Lipoate-protein ligase, putative; class II AARS an	98.89
2p5i_A	288	BH3822 protein; PFAM03099, structural genomics, PS	98.56
2p0l_A	288	Lipoate-protein ligase A; PFAM, lopoate-protein li	98.56
2qhs_A	237	Lipoyltransferase; globular protein; HET: OCA; 1.5	98.19
1w66_A	232	Lipoyltransferase; lipoate-protein ligase B, lipoi	95.99

>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A

Probab=99.01  E-value=1.7e-10  Score=88.86  Aligned_cols=56  Identities=38%  Similarity=0.571  Sum_probs=45.8

Q ss_pred             CcccceeccCCeeeEeeeeeeecChHHHhhhccCC-------ccCcC-----------CcchHHHHHHHHHHHH
Q psy8042           1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH-------AINSC-----------PEDLVKTLSKSFILDL   56 (90)
Q Consensus         1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~N-------~~~sv-----------p~~tVenL~e~l~~df   56 (90)
                      |||+|+++.+++.|||||||+|+|++.|.++|+++       ...|+           |+++++++++.+.+.|
T Consensus       136 IsG~Aq~~~~~~~lhhgtll~~~d~~~l~~~l~~~~~~~~~kgv~Sv~~~v~~L~~~~~~~~~~~v~~~l~~~f  209 (347)
T 2e5a_A          136 ISGTASKIGRNAAYHHCTLLCGTDGTFLSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEY  209 (347)
T ss_dssp             EECEEEEECSSCEEEEEEEESSCCHHHHHHHTSCCCCSEEECSCCCCCCCBCCHHHHCTTCCHHHHHHHHHHHH
T ss_pred             EEEEeEEeeCCeEEEEEEEEEecCHHHHHHHHccCchhhhhhcccchHHhhccHHHhCCCCCHHHHHHHHHHHH
Confidence            69999999999999999999999999999999963       12223           3467777777777766

>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*

Probab=99.00  E-value=3.2e-10  Score=87.07  Aligned_cols=56  Identities=25%  Similarity=0.366  Sum_probs=47.3

Q ss_pred             CcccceeccCCeeeEeeeeeeecChHHHhhhccCC------------------ccCcCCcchHHHHHHHHHHHH
Q psy8042           1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH------------------AINSCPEDLVKTLSKSFILDL   56 (90)
Q Consensus         1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~N------------------~~~svp~~tVenL~e~l~~df   56 (90)
                      |||+|+++.+++.|||||||+|+|++.|.++|+++                  +.+..+.++++++++.+.+.|
T Consensus       134 IsG~Aqr~~~~~~lhhgtll~~~dl~~l~~~l~~~~~~~~~kgv~sv~~~vt~L~~~~~~~~~~~v~~~l~~~f  207 (337)
T 3a7r_A          134 VSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAF  207 (337)
T ss_dssp             EEEEEEEECSSEEEEEEEEESSCCHHHHHHHTSCCCCEEEECSCCCCCCCBCCGGGTCTTCCHHHHHHHHHHHH
T ss_pred             EEEEEEEEECCEEEEEEEEEecCCHHHHHHHhcCChhhhhhcCCCchhhheeEHHHhCCCCCHHHHHHHHHHHH
Confidence            69999999999999999999999999999999952                  233344578888888887776

>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A

Probab=98.90  E-value=1.4e-09  Score=80.19  Aligned_cols=55  Identities=18%  Similarity=0.299  Sum_probs=44.4

Q ss_pred             CcccceeccCCeeeEeeeeeeecChHHHhhhccCC------------------ccCcCCcchHHHHHHHHHHHH
Q psy8042           1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH------------------AINSCPEDLVKTLSKSFILDL   56 (90)
Q Consensus         1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~N------------------~~~svp~~tVenL~e~l~~df   56 (90)
                      |||+|+++.++..||||||++|+|++.|.++|+++                  +.+.. .++++++++.+.+.|
T Consensus       146 i~G~aqr~~~~~~lhhgtllv~~d~~~~~~~l~~~~~~~~~~g~~s~~~~vtsL~~~~-~~~~~~v~~~l~~~~  218 (262)
T 2c8m_A          146 IMGAAGAMRKGAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDFV-DVSIDEVRNALIRGF  218 (262)
T ss_dssp             EEEEEEEEETTEEEEEEEEESSCCHHHHHHHTC---------------CCBCCGGGTS-CCCHHHHHHHHHHHH
T ss_pred             EEEeeeEEeCCEEEEEEEEEecCCHHHHHHHhCCChhhhhhhccccHHhhhccHHHhc-CCCHHHHHHHHHHHH
Confidence            68999999999999999999999999999999852                  22222 367888888777766

>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3

Probab=98.89  E-value=1.3e-09  Score=84.26  Aligned_cols=56  Identities=25%  Similarity=0.306  Sum_probs=47.6

Q ss_pred             CcccceeccCCeeeEeeeeeeecChHHHhhhccCC------------------ccCcCC-cchHHHHHHHHHHHH
Q psy8042           1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH------------------AINSCP-EDLVKTLSKSFILDL   56 (90)
Q Consensus         1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~N------------------~~~svp-~~tVenL~e~l~~df   56 (90)
                      |||+|+++.+++.|||||||+|+|++.|.++|+++                  +.+..+ .++++++++++.+.|
T Consensus       143 IsG~Aqr~~~~~~lhhgtllvd~Dl~~~~~~L~~~~~k~~~kgv~s~~~~VtsL~~~l~~~~~~~~v~~~l~~~f  217 (341)
T 1vqz_A          143 FCGNAQAYINGRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYM  217 (341)
T ss_dssp             EEEEEEEEETTEEEEEEEEESSCCTTHHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHH
T ss_pred             EEEEEEEEECCEEEEEEEEEecCCHHHHHHHhCCCccchhhcccccchhhheeHHHhcCCCCCHHHHHHHHHHHH
Confidence            69999999999999999999999999999999852                  333344 478888888887777

>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3

Probab=98.56  E-value=3.1e-08  Score=74.31  Aligned_cols=35  Identities=11%  Similarity=0.099  Sum_probs=31.7

Q ss_pred             CcccceeccCCeeeEeeeeeeecChHH--------HhhhccCC
Q psy8042           1 ISGTAAKLGRPSSYHHCTLLVNVNKSR--------LSQSLHHH   35 (90)
Q Consensus         1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~--------L~~~L~~N   35 (90)
                      |||+|+++.++..||||||++|.|++.        +.++|+|.
T Consensus       163 I~G~Aqr~~~~~~lhh~~l~v~~dl~~~~~~l~~f~~~~l~~~  205 (288)
T 2p5i_A          163 FAGISQRRIRGGVAVQIYLCVSGSGAERAKMIRTFYDKAVAGQ  205 (288)
T ss_dssp             EEEEEEEEETTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTS
T ss_pred             EEEEEEEEeCCEEEEEEEEEecCCHHHHHHHHHHHHHHhhcCc
Confidence            689999999999999999999999999        67777764

>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3

Probab=98.56  E-value=3.7e-08  Score=74.00  Aligned_cols=34  Identities=15%  Similarity=0.034  Sum_probs=30.5

Q ss_pred             CcccceeccCCeeeEeeeeeeecChHH--------HhhhccC
Q psy8042           1 ISGTAAKLGRPSSYHHCTLLVNVNKSR--------LSQSLHH   34 (90)
Q Consensus         1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~--------L~~~L~~   34 (90)
                      |||+|+++.++..||||||++|.|++.        +.++|++
T Consensus       162 I~G~Aqr~~~~~~lhh~sl~v~~dl~~~~~~l~~~~~~~l~~  203 (288)
T 2p0l_A          162 FAGLAQRRIKNGIAVSIYLSVCGDQKGRSQMISDFYKIGLGD  203 (288)
T ss_dssp             EEEEEEEEETTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEeEEEeCCEEEEEEEEEecCCHHHHHHHHHHHHHHhcCC
Confidence            699999999999999999999999999        5556665

>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A

Probab=98.19  E-value=1.6e-06  Score=63.87  Aligned_cols=56  Identities=11%  Similarity=0.109  Sum_probs=42.1

Q ss_pred             CcccceeccCCeeeEeeeeeeecChHHHhhhccCCccC----cC-----CcchHHHHHHHHHHHH
Q psy8042           1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHHAIN----SC-----PEDLVKTLSKSFILDL   56 (90)
Q Consensus         1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~N~~~----sv-----p~~tVenL~e~l~~df   56 (90)
                      |||+|+++.++..|||+||+||+|++.+.+.....+.+    |+     +.++++++++.+.+.|
T Consensus       157 Iag~g~~~~~~~~~hg~aLnv~~dl~~f~~i~p~g~~~~~vtSl~~~l~~~~~~~ev~~~l~~~f  221 (237)
T 2qhs_A          157 LCAIGVAVKEGVSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKLLGRKVPMEEAKARVVAAF  221 (237)
T ss_dssp             EEEEEEEEETTEEEEEEEEESSCCGGGGGGBCCCSSCCSEECCHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             EEEEeEEeeCCeEEEeEEEecccChHHhcCcCcCccCCCcEEeHHHhhCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999999999887654322221    22     2466777777776665

>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3

Probab=95.99  E-value=0.008  Score=44.46  Aligned_cols=56  Identities=9%  Similarity=0.147  Sum_probs=37.1

Q ss_pred             CcccceeccCCeeeEeeeeeeecChHHHhhhccCCcc----Cc-----CCcchHHHHHHHHHHHH
Q psy8042           1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHHAI----NS-----CPEDLVKTLSKSFILDL   56 (90)
Q Consensus         1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~N~~----~s-----vp~~tVenL~e~l~~df   56 (90)
                      |||.+.++.++..||+.+|.+|.|++.+.+...-.+.    .|     -++++++++++.+.+.|
T Consensus       145 Iaaig~r~~~~vt~HG~aLNv~~dL~~f~~I~pcgi~~k~vtSl~~~lg~~~~~~ev~~~l~~~f  209 (232)
T 1w66_A          145 VAAIGVRVSRATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAV  209 (232)
T ss_dssp             EEEEEEEEETTEEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             EEEeeeeeeCCEEEcceEEecCcChHHhcCccccccCCCceeeeHHHhCCCCCHHHHHHHHHHHH
Confidence            6788999999999988799888886555433211111    11     12467777777776666

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	90
d2p5ia1	265	d.104.1.3 (A:14-278) Hypothetical protein BH3822 {	5e-04
d2p0la1	269	d.104.1.3 (A:4-272) Lipoate-protein ligase A {Stre	7e-04

>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]} Length = 265

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Hypothetical protein BH3822
species: Bacillus halodurans [TaxId: 86665]

 Score = 34.7 bits (79), Expect = 5e-04
 Identities = 4/34 (11%), Positives = 13/34 (38%)

Query: 1   ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH 34
            +G + +  R        L V+ + +  ++ +  
Sbjct: 150 FAGISQRRIRGGVAVQIYLCVSGSGAERAKMIRT 183

>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Lipoate-protein ligase A
species: Streptococcus agalactiae [TaxId: 1311]

 Score = 34.2 bits (78), Expect = 7e-04
 Identities = 6/51 (11%), Positives = 14/51 (27%)

Query: 1   ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHHAINSCPEDLVKTLSKS 51
            +G A +  +        L V  ++   SQ +         +        +
Sbjct: 159 FAGLAQRRIKNGIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPN 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	90
d1x2ga2	246	Two-domain LplA, N-terminal domain {Escherichia co	98.96
d2c8ma1	256	Lipoate-protein ligase A {Thermoplasma acidophilum	98.87
d1vqza2	241	LplA-like protein SP1160, N-terminal domain {Strep	98.85
d2p0la1	269	Lipoate-protein ligase A {Streptococcus agalactiae	98.59
d2p5ia1	265	Hypothetical protein BH3822 {Bacillus halodurans [	98.52

>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Two-domain LplA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=2.4e-10  Score=81.22  Aligned_cols=56  Identities=25%  Similarity=0.370  Sum_probs=48.9

Q ss_pred             CcccceeccCCeeeEeeeeeeecChHHHhhhccC------------------CccCcCCcchHHHHHHHHHHHH
Q psy8042           1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH------------------HAINSCPEDLVKTLSKSFILDL   56 (90)
Q Consensus         1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~------------------N~~~svp~~tVenL~e~l~~df   56 (90)
                      |+|+|++..++..+|||||+++.|++.|.++|++                  |+.+..++++++++.+.|.+.|
T Consensus       134 i~G~aq~~~~~~~l~hgsi~~~~d~~~~~~~l~~~~~~~~~~~~~s~~~~vt~l~e~~~~i~~e~~~~~l~~~f  207 (246)
T d1x2ga2         134 VSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAF  207 (246)
T ss_dssp             EEEEEEEECSSEEEEEEEEESSCCSSGGGGGBCCCHHHHHCCC------CBCCGGGTCTTCCHHHHHHHHHHHH
T ss_pred             EEeEEEEEECCEEEEeCEEeecCCHHHHHhhcCCCccchhhhcccchhhhCcCHHHhCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999999999999999997                  3455666678888888887776

>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Lipoate-protein ligase A
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.87  E-value=9e-10  Score=78.61  Aligned_cols=55  Identities=18%  Similarity=0.312  Sum_probs=45.5

Q ss_pred             CcccceeccCCeeeEeeeeeeecChHHHhhhccC------------------CccCcCCcchHHHHHHHHHHHH
Q psy8042           1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH------------------HAINSCPEDLVKTLSKSFILDL   56 (90)
Q Consensus         1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~------------------N~~~svp~~tVenL~e~l~~df   56 (90)
                      |+|+|++..++..+||||||+|.|++.|.++|++                  |+.+.. +++++++.+++++.|
T Consensus       146 i~G~a~~~~~~~~l~hgtll~~~d~~~l~~~L~~~~~~~~~~~~~s~~~~vt~L~~~~-~~~~e~~~~~l~~~f  218 (256)
T d2c8ma1         146 IMGAAGAMRKGAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDFV-DVSIDEVRNALIRGF  218 (256)
T ss_dssp             EEEEEEEEETTEEEEEEEEESSCCHHHHHHHTC---------------CCBCCGGGTS-CCCHHHHHHHHHHHH
T ss_pred             eccccccccccEEEEEeEeecCCCHHHHHHHhCCCccchhhhcccchHhhcccHHhcC-CCCHHHHHHHHHHHH
Confidence            6899999999999999999999999999999986                  223333 377888888887766

>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: LplA-like protein SP1160, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.85  E-value=1.2e-09  Score=77.07  Aligned_cols=56  Identities=25%  Similarity=0.306  Sum_probs=46.1

Q ss_pred             CcccceeccCCeeeEeeeeeeecChHHHhhhccCC------------------ccCcCC-cchHHHHHHHHHHHH
Q psy8042           1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH------------------AINSCP-EDLVKTLSKSFILDL   56 (90)
Q Consensus         1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~N------------------~~~svp-~~tVenL~e~l~~df   56 (90)
                      |+|+|++..++..+|||||++|.|++.+.++|++.                  +.+.++ .++++++++.+++.|
T Consensus       131 i~G~aq~~~~~~~l~hgsll~~~d~~~~~~~l~~~~~~~~~~~~~s~~~~v~~l~~~l~~~~~~e~~~~~l~~~f  205 (241)
T d1vqza2         131 FCGNAQAYINGRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYM  205 (241)
T ss_dssp             EEEEEEEEETTEEEEEEEEESSCCTTHHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHH
T ss_pred             EeeEEEEEeCCeEEEEEEEEecCCHHHHHHHhCCCcccchhhccccchhhccchHHHhCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999999999999999862                  233333 467888888777755

>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Lipoate-protein ligase A
species: Streptococcus agalactiae [TaxId: 1311]

Probab=98.59  E-value=9.6e-09  Score=75.67  Aligned_cols=33  Identities=18%  Similarity=0.058  Sum_probs=31.4

Q ss_pred             CcccceeccCCeeeEeeeeeeecChHHHhhhcc
Q psy8042           1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLH   33 (90)
Q Consensus         1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~   33 (90)
                      |||||++..++..+||||||+|.|.+.+.++++
T Consensus       159 i~G~Aqr~~r~~~l~hgtllv~~d~~~~~~ll~  191 (269)
T d2p0la1         159 FAGLAQRRIKNGIAVSIYLSVCGDQKGRSQMIS  191 (269)
T ss_dssp             EEEEEEEEETTEEEEEEEEECSSCHHHHHHHHH
T ss_pred             EEEEeEEEECCEEEEEEEEEEeCCHHHHHHHHH
Confidence            699999999999999999999999999988886

>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Hypothetical protein BH3822
species: Bacillus halodurans [TaxId: 86665]

Probab=98.52  E-value=1.9e-08  Score=73.36  Aligned_cols=34  Identities=12%  Similarity=0.085  Sum_probs=32.3

Q ss_pred             CcccceeccCCeeeEeeeeeeecChHHHhhhccC
Q psy8042           1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH   34 (90)
Q Consensus         1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~   34 (90)
                      |||+|++..++..+||||||++.|++.|.++|++
T Consensus       150 i~G~Aq~~~~~~~l~hgsll~~~d~~~~~~~l~~  183 (265)
T d2p5ia1         150 FAGISQRRIRGGVAVQIYLCVSGSGAERAKMIRT  183 (265)
T ss_dssp             EEEEEEEEETTEEEEEEEEECSSCHHHHHHHHHH
T ss_pred             EEEEeEEEECCEEEEEEEEEecCCHHHHHHHHhc
Confidence            6899999999999999999999999999999864