Psyllid ID: psy8052

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-------
Protein Sequence
MVTSLSLLFGSSPDFLGVVVLEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ
Secondary Structure (PSIPRED)
cHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEEHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mvtslsllfgsspdfLGVVVLEIERSIISQMLRKSVeakdwlhgieprNVRAVMKRIIEELTLVDNQ
Flexible Loop (DISEMBL)
mvtslsllfgsspdFLGVVVLEIERSIISQMLRksveakdwlhgieprnvraVMKRIIEELTLVDNQ
Low Complexity Region (SEG)
MVTSLSLLFGSSPDFLGVVVLEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ
Disordered region (IsUnstruct)
******LLFGSSPDFLGVVVLEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTL****
Disordered Region (DISOPRED)
*******LFGSSPDFLGVVVLEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLV***
Disordered Region (DISEMBL)
MVTSLSLLFGSSPDFLGVVVLEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ
Disordered Region (DISPRO)
MVTSLSLLFGSSPDFLGVVVLEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVD**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVTSLSLLFGSSPDFLGVVVLEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	67	2.2.26 [Sep-21-2011]
Q3UVL4	782	Vacuolar protein sorting-	yes	N/A	0.701	0.060	0.595	6e-11
Q9UID3	782	Vacuolar protein sorting-	yes	N/A	0.701	0.060	0.595	6e-11
Q155U0	827	Vacuolar protein sorting-	yes	N/A	0.701	0.056	0.617	7e-11
Q5ZJ25	787	Vacuolar protein sorting-	yes	N/A	0.701	0.059	0.553	7e-11
Q505L3	757	Vacuolar protein sorting-	N/A	N/A	0.985	0.087	0.515	8e-11
A6QQ47	781	Vacuolar protein sorting-	yes	N/A	0.701	0.060	0.595	9e-11
Q4V9Y0	760	Vacuolar protein sorting-	yes	N/A	0.985	0.086	0.515	1e-10
Q8MSY4	740	Vacuolar protein sorting-	yes	N/A	0.507	0.045	0.764	2e-09

>sp|Q3UVL4|VPS51_MOUSE Vacuolar protein sorting-associated protein 51 homolog OS=Mus musculus GN=Vps51 PE=2 SV=2

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/47 (59%), Positives = 39/47 (82%)

Query: 21  LEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
           ++++  +ISQMLRKSVE +DWL  +EPRNVRAVMKR++E+ T +D Q
Sbjct: 580 VKVQGLVISQMLRKSVETRDWLSTLEPRNVRAVMKRVVEDTTAIDVQ 626

Required for both Golgi structure and vesicular trafficking, and ultimately lipid transport.
Mus musculus (taxid: 10090)

>sp|Q9UID3|VPS51_HUMAN Vacuolar protein sorting-associated protein 51 homolog OS=Homo sapiens GN=VPS51 PE=1 SV=2

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/47 (59%), Positives = 39/47 (82%)

Query: 21  LEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
           ++++  +ISQMLRKSVE +DWL  +EPRNVRAVMKR++E+ T +D Q
Sbjct: 580 VKVQGLVISQMLRKSVETRDWLSTLEPRNVRAVMKRVVEDTTAIDVQ 626

Required for both Golgi structure and vesicular trafficking, and ultimately lipid transport.

Homo sapiens (taxid: 9606)

>sp|Q155U0|VPS51_DANRE Vacuolar protein sorting-associated protein 51 homolog OS=Danio rerio GN=vps51 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/47 (61%), Positives = 40/47 (85%)

Query: 21  LEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
           ++++  IISQMLRKSVE +DW++ IEPRNVRAVMKR++E+ T +D Q
Sbjct: 625 VKVQGLIISQMLRKSVETRDWVNTIEPRNVRAVMKRVVEDTTSIDVQ 671

Regulator of vesicle recycling and protein sorting. Required for both Golgi structure and vesicular trafficking, and ultimately lipid transport.

Danio rerio (taxid: 7955)

>sp|Q5ZJ25|VPS51_CHICK Vacuolar protein sorting-associated protein 51 homolog OS=Gallus gallus GN=VPS51 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/47 (55%), Positives = 40/47 (85%)

Query: 21  LEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
           ++++ + ++QMLRKSVE +DWL  +EPRNVRAVMKR++E++T +D Q
Sbjct: 585 VQVQGAAVAQMLRKSVETRDWLGTVEPRNVRAVMKRVVEDITAIDVQ 631

Required for both Golgi structure and vesicular trafficking, and ultimately lipid transport.

Gallus gallus (taxid: 9031)

>sp|Q505L3|VPS51_XENLA Vacuolar protein sorting-associated protein 51 homolog OS=Xenopus laevis GN=vps51 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/66 (51%), Positives = 47/66 (71%)

Query: 2   VTSLSLLFGSSPDFLGVVVLEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEEL 61
           V+SL  L  S+   L    ++ +  ++SQMLRKSVE +DW+  IEPRNVRAVMKR++E++
Sbjct: 536 VSSLCSLARSTAQTLLNQFVKYQGLVVSQMLRKSVETRDWVTTIEPRNVRAVMKRVVEDI 595

Query: 62  TLVDNQ 67
           T VD Q
Sbjct: 596 TGVDVQ 601

Required for both Golgi structure and vesicular trafficking, and ultimately lipid transport.

Xenopus laevis (taxid: 8355)

>sp|A6QQ47|VPS51_BOVIN Vacuolar protein sorting-associated protein 51 homolog OS=Bos taurus GN=VPS51 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/47 (59%), Positives = 39/47 (82%)

Query: 21  LEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
           ++++  +ISQMLRKSVE +DWL  +EPRNVRAVMKR++E+ T +D Q
Sbjct: 579 VKVQGLVISQMLRKSVETRDWLSTLEPRNVRAVMKRVVEDTTAIDVQ 625

Required for both Golgi structure and vesicular trafficking, and ultimately lipid transport.

Bos taurus (taxid: 9913)

>sp|Q4V9Y0|VPS51_XENTR Vacuolar protein sorting-associated protein 51 homolog OS=Xenopus tropicalis GN=vps51 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/66 (51%), Positives = 47/66 (71%)

Query: 2   VTSLSLLFGSSPDFLGVVVLEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEEL 61
           V+SL  L  S+   L    ++ +  ++SQMLRKSVE +DW+  IEPRNVRAVMKR++E++
Sbjct: 539 VSSLCSLARSTAQTLLNQYVKSQGLVVSQMLRKSVETRDWVTTIEPRNVRAVMKRVVEDI 598

Query: 62  TLVDNQ 67
           T VD Q
Sbjct: 599 TGVDVQ 604

Required for both Golgi structure and vesicular trafficking, and ultimately lipid transport.

Xenopus tropicalis (taxid: 8364)

>sp|Q8MSY4|VPS51_DROME Vacuolar protein sorting-associated protein 51 homolog OS=Drosophila melanogaster GN=CG15087 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 32/34 (94%)

Query: 28  ISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEEL 61
           ISQMLRKSVE +DWL+ +EPR+VRAVMKR++EEL
Sbjct: 537 ISQMLRKSVETRDWLNCLEPRSVRAVMKRVVEEL 570


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.137    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,525,381
Number of Sequences: 539616
Number of extensions: 531049
Number of successful extensions: 1644
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1635
Number of HSP's gapped (non-prelim): 10
length of query: 67
length of database: 191,569,459
effective HSP length: 39
effective length of query: 28
effective length of database: 170,524,435
effective search space: 4774684180
effective search space used: 4774684180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
350415329	735	PREDICTED: protein fat-free homolog [Bom	0.597	0.054	0.725	1e-10
340725463	735	PREDICTED: protein fat-free homolog [Bom	0.597	0.054	0.725	2e-10
328783277	738	PREDICTED: protein fat-free homolog [Api	0.597	0.054	0.725	2e-10
380024661	736	PREDICTED: protein fat-free homolog [Api	0.597	0.054	0.725	2e-10
449679965	213	PREDICTED: vacuolar protein sorting-asso	0.597	0.187	0.725	3e-10
328710087	710	PREDICTED: protein fat-free homolog isof	0.597	0.056	0.725	4e-10
193596438	731	PREDICTED: protein fat-free homolog isof	0.597	0.054	0.725	4e-10
260817677	537	hypothetical protein BRAFLDRAFT_126884 [	0.597	0.074	0.725	6e-10
307211604	734	Uncharacterized protein C11orf2 [Harpegn	0.895	0.081	0.533	6e-10
307182280	627	Uncharacterized protein C11orf2 [Campono	0.597	0.063	0.7	6e-10

>gi|350415329|ref|XP_003490604.1| PREDICTED: protein fat-free homolog [Bombus impatiens]

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 36/40 (90%)

Query: 28  ISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
           +SQMLRKSVE +DWLH IEPR VRAVMKR++E++TL+D Q
Sbjct: 540 VSQMLRKSVETRDWLHTIEPRTVRAVMKRVVEDVTLIDTQ 579

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725463|ref|XP_003401089.1| PREDICTED: protein fat-free homolog [Bombus terrestris]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 36/40 (90%)

Query: 28  ISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
           +SQMLRKSVE +DWLH IEPR VRAVMKR++E++TL+D Q
Sbjct: 540 VSQMLRKSVETRDWLHTIEPRTVRAVMKRVVEDVTLIDTQ 579

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783277|ref|XP_625224.3| PREDICTED: protein fat-free homolog [Apis mellifera]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 36/40 (90%)

Query: 28  ISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
           +SQMLRKSVE +DWLH IEPR VRAVMKR++E++TL+D Q
Sbjct: 543 VSQMLRKSVETRDWLHTIEPRTVRAVMKRVVEDVTLIDTQ 582

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024661|ref|XP_003696111.1| PREDICTED: protein fat-free homolog [Apis florea]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 36/40 (90%)

Query: 28  ISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
           +SQMLRKSVE +DWLH IEPR VRAVMKR++E++TL+D Q
Sbjct: 543 VSQMLRKSVETRDWLHTIEPRTVRAVMKRVVEDVTLIDTQ 582

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449679965|ref|XP_002155031.2| PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Hydra magnipapillata]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 38/40 (95%)

Query: 28 ISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
          ISQMLRKSVE +DWL+ IEPRNVRAVMKR++E++T++D+Q
Sbjct: 21 ISQMLRKSVETRDWLNTIEPRNVRAVMKRVVEDITIIDSQ 60

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|328710087|ref|XP_003244160.1| PREDICTED: protein fat-free homolog isoform 2 [Acyrthosiphon pisum]

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 36/40 (90%)

Query: 28  ISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
           ISQML+KSVE +DWLH +EPR VRAVMKR++EE+T VD+Q
Sbjct: 522 ISQMLKKSVETRDWLHSLEPRTVRAVMKRVVEEITSVDSQ 561

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193596438|ref|XP_001947063.1| PREDICTED: protein fat-free homolog isoform 1 [Acyrthosiphon pisum]

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 36/40 (90%)

Query: 28  ISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
           ISQML+KSVE +DWLH +EPR VRAVMKR++EE+T VD+Q
Sbjct: 543 ISQMLKKSVETRDWLHSLEPRTVRAVMKRVVEEITSVDSQ 582

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260817677|ref|XP_002603712.1| hypothetical protein BRAFLDRAFT_126884 [Branchiostoma floridae] gi|229289034|gb|EEN59723.1| hypothetical protein BRAFLDRAFT_126884 [Branchiostoma floridae]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 37/40 (92%)

Query: 28  ISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
           ISQMLRKSVE +DWL+ IEPRNVRAVMKR++E++T +D+Q
Sbjct: 342 ISQMLRKSVETRDWLNTIEPRNVRAVMKRVVEDVTAIDSQ 381

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|307211604|gb|EFN87653.1| Uncharacterized protein C11orf2 [Harpegnathos saltator]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 44/60 (73%)

Query: 8   LFGSSPDFLGVVVLEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
            F S+   L    + I+   +SQMLRKSVE +DWL+ IEPRNVRAVMKR++E++T +D+Q
Sbjct: 519 CFQSAAQNLLNHYVRIQGLTVSQMLRKSVETRDWLNTIEPRNVRAVMKRVVEDVTAIDSQ 578

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307182280|gb|EFN69590.1| Uncharacterized protein C11orf2 [Camponotus floridanus]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 36/40 (90%)

Query: 28  ISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
           +SQMLRKSVE +DWLH IEPR VRAVMKR++E++T +D+Q
Sbjct: 432 VSQMLRKSVETRDWLHTIEPRTVRAVMKRVVEDVTAIDSQ 471

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
UNIPROTKB|F1RQT6	782	VPS51 "Uncharacterized protein	0.701	0.060	0.595	2.9e-10
RGD|2319165	663	Vps51 "vacuolar protein sortin	0.701	0.070	0.595	3.8e-10
ZFIN|ZDB-GENE-030131-6008	827	vps51 "vacuolar protein sortin	0.701	0.056	0.617	4e-10
UNIPROTKB|F1MJ84	706	F1MJ84 "Uncharacterized protei	0.701	0.066	0.595	4.1e-10
UNIPROTKB|A6QQ47	781	VPS51 "Vacuolar protein sortin	0.701	0.060	0.595	4.7e-10
UNIPROTKB|Q9UID3	782	VPS51 "Vacuolar protein sortin	0.701	0.060	0.595	4.7e-10
MGI|MGI:1915755	782	Vps51 "vacuolar protein sortin	0.701	0.060	0.595	4.7e-10
UNIPROTKB|F1PLV1	792	VPS51 "Uncharacterized protein	0.701	0.059	0.595	4.8e-10
UNIPROTKB|E1BU40	771	E1BU40 "Uncharacterized protei	0.701	0.060	0.553	6e-10
UNIPROTKB|Q5ZJ25	787	VPS51 "Vacuolar protein sortin	0.701	0.059	0.553	6.1e-10

UNIPROTKB|F1RQT6 VPS51 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 157 (60.3 bits), Expect = 2.9e-10, P = 2.9e-10
 Identities = 28/47 (59%), Positives = 39/47 (82%)

Query:    21 LEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
             ++++  +ISQMLRKSVE +DWL  +EPRNVRAVMKR++E+ T +D Q
Sbjct:   580 VKVQGLVISQMLRKSVETRDWLSSLEPRNVRAVMKRVVEDTTAIDVQ 626

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0000938 "GARP complex" evidence=IEA

RGD|2319165 Vps51 "vacuolar protein sorting 51 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 155 (59.6 bits), Expect = 3.8e-10, P = 3.8e-10
 Identities = 28/47 (59%), Positives = 39/47 (82%)

Query:    21 LEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
             ++++  +ISQMLRKSVE +DWL  +EPRNVRAVMKR++E+ T +D Q
Sbjct:   461 VKVQGLVISQMLRKSVETRDWLSTLEPRNVRAVMKRVVEDTTAIDVQ 507

GO:0000938 "GARP complex" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006914 "autophagy" evidence=ISO

GO:0017119 "Golgi transport complex" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

ZFIN|ZDB-GENE-030131-6008 vps51 "vacuolar protein sorting 51 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 156 (60.0 bits), Expect = 4.0e-10, P = 4.0e-10
 Identities = 29/47 (61%), Positives = 40/47 (85%)

Query:    21 LEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
             ++++  IISQMLRKSVE +DW++ IEPRNVRAVMKR++E+ T +D Q
Sbjct:   625 VKVQGLIISQMLRKSVETRDWVNTIEPRNVRAVMKRVVEDTTSIDVQ 671

GO:0030306 "ADP-ribosylation factor binding" evidence=IPI

GO:0010517 "regulation of phospholipase activity" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0044241 "lipid digestion" evidence=IMP

GO:0048193 "Golgi vesicle transport" evidence=IMP

GO:0007030 "Golgi organization" evidence=IMP

GO:0005622 "intracellular" evidence=IMP

UNIPROTKB|F1MJ84 F1MJ84 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 155 (59.6 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 28/47 (59%), Positives = 39/47 (82%)

Query:    21 LEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
             ++++  +ISQMLRKSVE +DWL  +EPRNVRAVMKR++E+ T +D Q
Sbjct:   504 VKVQGLVISQMLRKSVETRDWLSTLEPRNVRAVMKRVVEDTTAIDVQ 550

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0000938 "GARP complex" evidence=IEA

UNIPROTKB|A6QQ47 VPS51 "Vacuolar protein sorting-associated protein 51 homolog" [Bos taurus (taxid:9913)]

 Score = 155 (59.6 bits), Expect = 4.7e-10, P = 4.7e-10
 Identities = 28/47 (59%), Positives = 39/47 (82%)

Query:    21 LEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
             ++++  +ISQMLRKSVE +DWL  +EPRNVRAVMKR++E+ T +D Q
Sbjct:   579 VKVQGLVISQMLRKSVETRDWLSTLEPRNVRAVMKRVVEDTTAIDVQ 625

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0000938 "GARP complex" evidence=ISS

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISS

GO:0015031 "protein transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

UNIPROTKB|Q9UID3 VPS51 "Vacuolar protein sorting-associated protein 51 homolog" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 4.7e-10, P = 4.7e-10
 Identities = 28/47 (59%), Positives = 39/47 (82%)

Query:    21 LEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
             ++++  +ISQMLRKSVE +DWL  +EPRNVRAVMKR++E+ T +D Q
Sbjct:   580 VKVQGLVISQMLRKSVETRDWLSTLEPRNVRAVMKRVVEDTTAIDVQ 626

GO:0006869 "lipid transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=TAS

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006914 "autophagy" evidence=IMP

GO:0000938 "GARP complex" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

MGI|MGI:1915755 Vps51 "vacuolar protein sorting 51 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 155 (59.6 bits), Expect = 4.7e-10, P = 4.7e-10
 Identities = 28/47 (59%), Positives = 39/47 (82%)

Query:    21 LEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
             ++++  +ISQMLRKSVE +DWL  +EPRNVRAVMKR++E+ T +D Q
Sbjct:   580 VKVQGLVISQMLRKSVETRDWLSTLEPRNVRAVMKRVVEDTTAIDVQ 626

GO:0000938 "GARP complex" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0006914 "autophagy" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

UNIPROTKB|F1PLV1 VPS51 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 155 (59.6 bits), Expect = 4.8e-10, P = 4.8e-10
 Identities = 28/47 (59%), Positives = 39/47 (82%)

Query:    21 LEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
             ++++  +ISQMLRKSVE +DWL  +EPRNVRAVMKR++E+ T +D Q
Sbjct:   590 VKVQGLVISQMLRKSVETRDWLSTLEPRNVRAVMKRVVEDTTAIDVQ 636

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0000938 "GARP complex" evidence=IEA

UNIPROTKB|E1BU40 E1BU40 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 154 (59.3 bits), Expect = 6.0e-10, P = 6.0e-10
 Identities = 26/47 (55%), Positives = 40/47 (85%)

Query:    21 LEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
             ++++ + ++QMLRKSVE +DWL  +EPRNVRAVMKR++E++T +D Q
Sbjct:   569 VQVQGAAVAQMLRKSVETRDWLGTVEPRNVRAVMKRVVEDITAIDVQ 615

GO:0000938 "GARP complex" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

UNIPROTKB|Q5ZJ25 VPS51 "Vacuolar protein sorting-associated protein 51 homolog" [Gallus gallus (taxid:9031)]

 Score = 154 (59.3 bits), Expect = 6.1e-10, P = 6.1e-10
 Identities = 26/47 (55%), Positives = 40/47 (85%)

Query:    21 LEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ 67
             ++++ + ++QMLRKSVE +DWL  +EPRNVRAVMKR++E++T +D Q
Sbjct:   585 VQVQGAAVAQMLRKSVETRDWLGTVEPRNVRAVMKRVVEDITAIDVQ 631

GO:0006869 "lipid transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000938 "GARP complex" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UID3	VPS51_HUMAN	No assigned EC number	0.5957	0.7014	0.0601	yes	N/A
Q155U0	VPS51_DANRE	No assigned EC number	0.6170	0.7014	0.0568	yes	N/A
Q8MSY4	VPS51_DROME	No assigned EC number	0.7647	0.5074	0.0459	yes	N/A
Q4V9Y0	VPS51_XENTR	No assigned EC number	0.5151	0.9850	0.0868	yes	N/A
Q3UVL4	VPS51_MOUSE	No assigned EC number	0.5957	0.7014	0.0601	yes	N/A
A6QQ47	VPS51_BOVIN	No assigned EC number	0.5957	0.7014	0.0601	yes	N/A
Q5ZJ25	VPS51_CHICK	No assigned EC number	0.5531	0.7014	0.0597	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	67
KOG2346|consensus	636		99.64
PF01402	39	RHH_1: Ribbon-helix-helix protein, copG family; In	80.71

>KOG2346|consensus

Probab=99.64  E-value=3.1e-16  Score=126.03  Aligned_cols=61  Identities=33%  Similarity=0.522  Sum_probs=57.0

Q ss_pred             HHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHhhccccccCCCchHHHHHHHHHHHHhhhhcC
Q psy8052           5 LSLLFGSSPDFLGVVVLEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVDNQ   67 (67)
Q Consensus         5 ~~~~~~~aaq~Ll~~yv~~qG~~lsqmlrkSVe~rDWl~~~EPR~VRav~krvveel~aiD~~   67 (67)
                      +---|+  |++|+.||++.+|+.+|+||||+++++||+...|||+||++|+|+|||+++||.|
T Consensus       443 lc~~~r--a~kLl~hY~~~~gl~vs~~LrK~~~t~~w~~~~epr~vra~v~r~vee~~~~d~e  503 (636)
T KOG2346|consen  443 LCRVFR--AEKLLQHYIDTRGLKVSVLLRKRFKTPNWVKHKEPREVRAYVDRFVEELEEVDKE  503 (636)
T ss_pred             HHHHHH--HHHHHHHHHhhcchhHHHHHHHHhcCCccccccccchHHHHHHHHHHHHHHHhHH
Confidence            344566  9999999999999999999999999999999999999999999999999999974

>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number

Probab=80.71  E-value=2.4  Score=21.86  Aligned_cols=25  Identities=8%  Similarity=-0.124  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHh
Q psy8052          13 PDFLGVVVLEIERSIISQMLRKSVE   37 (67)
Q Consensus        13 aq~Ll~~yv~~qG~~lsqmlrkSVe   37 (67)
                      -.+.++.+++..|...|++||..++
T Consensus        10 ~~~~l~~~a~~~g~s~s~~ir~ai~   34 (39)
T PF01402_consen   10 LYERLDELAKELGRSRSELIREAIR   34 (39)
T ss_dssp             HHHHHHHHHHHHTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            4567899999999999999999854

It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	67
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 36.0 bits (82), Expect = 3e-04
 Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 19/67 (28%)

Query: 5   LSLLFGSSPDFLGVVVLEIERSIISQMLRKSVEAKDW------LHGI------EPRNVRA 52
           LSL++                 +++++ + S+  K        +  I      +  N  A
Sbjct: 392 LSLIWFDVIK-------SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 53  VMKRIIE 59
           + + I++
Sbjct: 445 LHRSIVD 451

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	67
2ba3_A	51	NIKA; dimer, bacterial conjugation, relaxase, DNA	84.43
2k9i_A	55	Plasmid PRN1, complete sequence; plasmid COPY cont	80.49

>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}

Probab=84.43  E-value=0.73  Score=24.59  Aligned_cols=23  Identities=17%  Similarity=-0.010  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHH
Q psy8052          14 DFLGVVVLEIERSIISQMLRKSV   36 (67)
Q Consensus        14 q~Ll~~yv~~qG~~lsqmlrkSV   36 (67)
                      ..+|..|++..|..+|+.||+.+
T Consensus        27 ~~~l~~~A~~~g~s~SeyiR~~~   49 (51)
T 2ba3_A           27 DETIRKKAEDSGLTVSAYIRNAA   49 (51)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHH
Confidence            46899999999999999999975

>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A

Probab=80.49  E-value=1.4  Score=23.12  Aligned_cols=23  Identities=9%  Similarity=0.028  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHh
Q psy8052          15 FLGVVVLEIERSIISQMLRKSVE   37 (67)
Q Consensus        15 ~Ll~~yv~~qG~~lsqmlrkSVe   37 (67)
                      .-++.|++..|...|+.||..++
T Consensus        22 ~~l~~~a~~~g~s~s~~ir~ai~   44 (55)
T 2k9i_A           22 DRLMEIAKEKNLTLSDVCRLAIK   44 (55)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHH
Confidence            46889999999999999999854

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00