Psyllid ID: psy8066

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------53
MAGRVFVLRSLGFKSIKGNHIQCSHFCSQAKPPPPSFQQPPLSTPLPGLPKVHYSCVKDNDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTSQPSVAARGELINFPSYEDIHSGIQNNGVLPRKGRISSVIN
ccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEEccccEEEEEEEEcccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHccccccccccccEEEEEEEccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccccHHHHccccHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEccccccccccccccccEEEEEEEcccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHcccEEEEEEcccccccccEEEEEEEEccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHcccccccccccccccc
cHHHHHHHHHcccccccccHHHHHHHcccccccccHccccccccccccccccccccccccccccEEEEcccccEEEEEccccccEEEEEEEcccHHHcccccccHHHHHHHHccccEcccccHHHHHHHHHHccccEccccccHHHHEEHHHcHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHccccccHHHHHHccHHHHHHHHHHHccHHHEEEEEEcccHHHHHHHHHHHHcccccccccccccccccccccccccccEcccEEEEEEEEccccccccccccEEEEEEEEccccccccHHHHHHHHHHHcEEEcccccccccccccHHHHHcccccccEEEEEEEEEEccccEEEEEEEEEcHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHccccccccEEEEEEcc
MAGRVFVLRSLgfksikgnhiqcshfcsqakppppsfqqpplstplpglpkvhyscvkdndrntqvttlpnglrvasenrfgsfctigviidsgsryeqpypsgvsHFLEKLAFnstseyvnKDAIAQSLEKIGgicdclssrDTFIYAASAATSGLDTVMKILGDvvlrpkfseEEINMARQTIQFELenyqmrpeQETLLMDMIHAAAykdntlglpklcppasigvinnnTLFTYLKNYYTPTRMVVAGIGVEHEALVEAANKyfvdkqpvwiqdkslvltdkpvidtssatytggivkeecniptfagtsglpelSHVVIglegvshqdpdfvpACVLNIlmggggsfsaggpgkgmyTRLYTNVLNRHHWMFSATAYnhayadtglfcihasappsnvkNIVDVLVKELVTmagpidadELSRAKKQLQSMLLMNlearpavfedVGRQVlatghrkrpstyIESIENVTEDDIRRVASRLLtsqpsvaargelinfpsyedihsgiqnngvlprkgrissvin
MAGRVFVLRSLGFKSIKGNHIQCSHFCSQAKPPPPSFQQPPLSTPLPGLPKVHYSCVKDndrntqvttlpnglrvasenrfgSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDkslvltdkpvidtssatytggivkEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVlatghrkrpstyiesienvteddIRRVASRlltsqpsvaarGELINFPSYEDIhsgiqnngvlprkgrissvin
MAGRVFVLRSLGFKSIKGNHIQCSHFCSQAKppppsfqqpplstplpGLPKVHYSCVKDNDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMggggsfsaggpgkgMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTSQPSVAARGELINFPSYEDIHSGIQNNGVLPRKGRISSVIN
****VFVLRSLGFKSIKGNHIQCSHFC************************VHYSCVKDNDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAGPIDAD********LQSMLLMNLEARPAVFEDVGRQVLATGHR***STYIESIENVTEDDIRRVASRLL*****VAARGELINFPSYEDIHSGI*****************
***************************************************************TQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIGVEHEALVEAANKYFVDKQP********************ATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSA*****GMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTSQPSVAARGELINFPSYEDIHS*******************
MAGRVFVLRSLGFKSIKGNHIQCSHFCS***********PPLSTPLPGLPKVHYSCVKDNDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTSQPSVAARGELINFPSYEDIHSGIQNNGVLPRKGRISSVIN
*********************Q***********PPSFQQPPLSTPLPGLPKVHYSCVKDNDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIGVEHEALVEAANKYFVDKQP******SLVLTDKPVIDTSSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTSQPSVAARGELINFPSYEDIHSGIQNNGVLPRKGRISSVIN
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAGRVFVLRSLGFKSIKGNHIQCSHFCSQAKPPPPSFQQPPLSTPLPGLPKVHYSCVKDNDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTSQPSVAARGELINFPSYEDIHSGIQNNGVLPRKGRISSVIN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query529 2.2.26 [Sep-21-2011]
Q5R513525 Mitochondrial-processing yes N/A 0.930 0.937 0.533 1e-153
Q10713525 Mitochondrial-processing yes N/A 0.930 0.937 0.527 1e-151
Q9DC61524 Mitochondrial-processing yes N/A 0.903 0.912 0.550 1e-150
Q0P5M8525 Mitochondrial-processing yes N/A 0.903 0.910 0.550 1e-149
P20069524 Mitochondrial-processing no N/A 0.896 0.904 0.523 1e-139
P11914482 Mitochondrial-processing yes N/A 0.805 0.883 0.391 1e-73
P97997474 Mitochondrial-processing N/A N/A 0.795 0.888 0.402 7e-72
O94745502 Probable mitochondrial-pr yes N/A 0.776 0.818 0.357 4e-58
P29677504 Mitochondrial-processing N/A N/A 0.803 0.843 0.342 1e-57
Q42290531 Probable mitochondrial-pr yes N/A 0.788 0.785 0.301 4e-53
>sp|Q5R513|MPPA_PONAB Mitochondrial-processing peptidase subunit alpha OS=Pongo abelii GN=PMPCA PE=2 SV=2 Back     alignment and function desciption
 Score =  541 bits (1395), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 272/510 (53%), Positives = 373/510 (73%), Gaps = 18/510 (3%)

Query: 27  CSQAKPPPPSFQQ---------PPLSTPLPGLPKVHYSCVKDNDR-NTQVTTLPNGLRVA 76
           CS+ +  PP++++          PLS+PLPG+PK  ++ V   ++  T+VTTL NGLRVA
Sbjct: 20  CSRLRFGPPAYRRFSSGGAYPNIPLSSPLPGVPKPVFATVDGQEKFETKVTTLDNGLRVA 79

Query: 77  SENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGI 136
           S+N+FG FCT+G++I+SGSRYE  Y SG++HFLEKLAF+ST+ + +KD I  +LEK GGI
Sbjct: 80  SQNKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSSTARFDSKDEILLTLEKHGGI 139

Query: 137 CDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRP 196
           CDC +SRDT +YA SA + GLDTV+ +L DVVL+P+ ++EE+ M R T+QFELE+  +RP
Sbjct: 140 CDCQTSRDTTMYAVSADSKGLDTVVGLLADVVLQPRLTDEEVEMTRMTVQFELEDLNLRP 199

Query: 197 EQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIGVE 256
           + E LL +MIH AAY++NT+GL + CP  +I  IN   L +YL+NYYTP RMV+AG+GVE
Sbjct: 200 DPEPLLTEMIHEAAYRENTVGLHRFCPTENIAKINREVLHSYLRNYYTPDRMVLAGVGVE 259

Query: 257 HEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIVKEECNIPTFA-GTSG 315
           HE LV+ A KY +  QP W   +++       ID S A YTGGI K E ++   + G + 
Sbjct: 260 HEHLVDCARKYLLGIQPAWGSAEAV------DIDRSVAQYTGGIAKRERDMSNVSLGPTP 313

Query: 316 LPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHW 375
           +PEL+H+++GLE  S  + DF+P  VLN++MGGGGSFSAGGPGKGM++RLY NVLNRHHW
Sbjct: 314 IPELTHIMVGLESCSFLEEDFIPFAVLNMMMGGGGSFSAGGPGKGMFSRLYLNVLNRHHW 373

Query: 376 MFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQS 435
           M++AT+Y+H+Y DTGL CIHASA P  V+ +V+++ KE + M+G +DA EL RAK QL S
Sbjct: 374 MYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMSGTVDAVELERAKTQLTS 433

Query: 436 MLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTSQPSVAA 495
           ML+MNLE+RP +FEDVGRQVLAT  RK P      I NV  +D++RVAS++L  +P+VAA
Sbjct: 434 MLMMNLESRPVIFEDVGRQVLATRSRKLPHELCTLIRNVKPEDVKRVASKMLRGKPAVAA 493

Query: 496 RGELINFPSYEDIHSGIQN-NGVLPRKGRI 524
            G+L + P+YE I + + + +G LPR  R+
Sbjct: 494 LGDLTDLPTYEHIQTALSSKDGRLPRTYRL 523
Cleaves presequences (transit peptides) from mitochondrial protein precursors.
Pongo abelii (taxid: 9601)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: 6EC: 4
>sp|Q10713|MPPA_HUMAN Mitochondrial-processing peptidase subunit alpha OS=Homo sapiens GN=PMPCA PE=1 SV=2 Back     alignment and function description
>sp|Q9DC61|MPPA_MOUSE Mitochondrial-processing peptidase subunit alpha OS=Mus musculus GN=Pmpca PE=1 SV=1 Back     alignment and function description
>sp|Q0P5M8|MPPA_BOVIN Mitochondrial-processing peptidase subunit alpha OS=Bos taurus GN=PMPCA PE=2 SV=1 Back     alignment and function description
>sp|P20069|MPPA_RAT Mitochondrial-processing peptidase subunit alpha OS=Rattus norvegicus GN=Pmpca PE=1 SV=1 Back     alignment and function description
>sp|P11914|MPPA_YEAST Mitochondrial-processing peptidase subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAS2 PE=1 SV=1 Back     alignment and function description
>sp|P97997|MPPA_BLAEM Mitochondrial-processing peptidase subunit alpha OS=Blastocladiella emersonii PE=3 SV=1 Back     alignment and function description
>sp|O94745|MPPA_SCHPO Probable mitochondrial-processing peptidase subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mas2 PE=3 SV=2 Back     alignment and function description
>sp|P29677|MPPA_SOLTU Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1 Back     alignment and function description
>sp|Q42290|MPPB_ARATH Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query529
283135236542 mitochondrial-processing peptidase subun 0.918 0.896 0.663 0.0
380019065549 PREDICTED: mitochondrial-processing pept 0.918 0.885 0.645 0.0
350405550553 PREDICTED: mitochondrial-processing pept 0.918 0.878 0.637 0.0
340711063551 PREDICTED: LOW QUALITY PROTEIN: mitochon 0.918 0.882 0.633 0.0
383865458546 PREDICTED: mitochondrial-processing pept 0.907 0.879 0.648 0.0
242020148556 mitochondrial-processing peptidase alpha 0.920 0.875 0.633 0.0
307170887540 Mitochondrial-processing peptidase subun 0.947 0.927 0.628 0.0
322786971543 hypothetical protein SINV_03489 [Solenop 0.947 0.922 0.623 0.0
307195361500 Mitochondrial-processing peptidase subun 0.918 0.972 0.635 1e-176
321470387527 hypothetical protein DAPPUDRAFT_303461 [ 0.916 0.920 0.626 1e-176
>gi|283135236|ref|NP_001164373.1| mitochondrial-processing peptidase subunit alpha [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/490 (66%), Positives = 396/490 (80%), Gaps = 4/490 (0%)

Query: 40  PPLSTPLPGLPKVHYSCVKDNDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQ 99
           PPLS P+PGLP   YS  K+  + T++TTL NGLRVASENRFG F T+GV+IDSGSRYE 
Sbjct: 50  PPLSEPIPGLPTPIYSNAKEGKQVTEITTLSNGLRVASENRFGQFFTVGVLIDSGSRYEV 109

Query: 100 PYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDT 159
            YPSG+SHFLEKLAF ST  + ++D I  +LEK GGICDC +SRDTF+YAASA   GLD 
Sbjct: 110 AYPSGISHFLEKLAFGSTKSFQDRDDIMLALEKHGGICDCQASRDTFVYAASAERHGLDK 169

Query: 160 VMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLP 219
           V ++LGD+V RP+ +EEE+N+ RQ IQFELE    RPEQE LLMDMIHAAAY+DNTLGLP
Sbjct: 170 VTEVLGDIVFRPRITEEEVNICRQIIQFELETLLTRPEQEPLLMDMIHAAAYRDNTLGLP 229

Query: 220 KLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDK 279
           K+CP  +I  I+   LFTYLK+++TP RMVVAG+GVEH+ LVEA  KYFVD++P+W +D 
Sbjct: 230 KICPEGNINKIDRKILFTYLKHHHTPKRMVVAGVGVEHKRLVEAVEKYFVDQKPIWEEDS 289

Query: 280 SLVLTD--KPVIDTSSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFV 337
           SL+++D  K  +D S A YTGG + EECN+P +AG SGLPELSH+VIGLEG SHQDPDFV
Sbjct: 290 SLIISDRSKNFVDESIAQYTGGYILEECNVPVYAGPSGLPELSHIVIGLEGCSHQDPDFV 349

Query: 338 PACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHAS 397
           P CVLN++MGGGGSFSAGGPGKGMYTRLYTNVLNR+HW++SATAYNHAYAD+G+FCIHAS
Sbjct: 350 PMCVLNMMMGGGGSFSAGGPGKGMYTRLYTNVLNRYHWLYSATAYNHAYADSGIFCIHAS 409

Query: 398 APPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLA 457
           + PS+V+ + +V+V E+V M G +   EL+RAKKQLQSMLLMNLE RP VFED+GRQVLA
Sbjct: 410 STPSHVREMAEVIVHEMVAMTGALSDSELARAKKQLQSMLLMNLEQRPVVFEDMGRQVLA 469

Query: 458 TGHRKRPSTYIESIENVTEDDIRRVASRLLTSQPSVAARGELINFPSYEDIHSGIQN-NG 516
           TG RKRP  +I++IEN T+DDI RVA RLL S PSVAARGE+ + PS  DI +G+ +  G
Sbjct: 470 TGERKRPEFFIQAIENTTKDDIIRVARRLLKSPPSVAARGEVRHVPSITDIQAGLLDAQG 529

Query: 517 VLP-RKGRIS 525
           +LP  + R+S
Sbjct: 530 LLPGSRSRLS 539

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380019065|ref|XP_003693437.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Apis florea] Back     alignment and taxonomy information
>gi|350405550|ref|XP_003487473.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|340711063|ref|XP_003394101.1| PREDICTED: LOW QUALITY PROTEIN: mitochondrial-processing peptidase subunit alpha-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|383865458|ref|XP_003708190.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|242020148|ref|XP_002430518.1| mitochondrial-processing peptidase alpha subunit, mitochondrial precursor, putative [Pediculus humanus corporis] gi|212515675|gb|EEB17780.1| mitochondrial-processing peptidase alpha subunit, mitochondrial precursor, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|307170887|gb|EFN62998.1| Mitochondrial-processing peptidase subunit alpha [Camponotus floridanus] Back     alignment and taxonomy information
>gi|322786971|gb|EFZ13195.1| hypothetical protein SINV_03489 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307195361|gb|EFN77279.1| Mitochondrial-processing peptidase subunit alpha [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|321470387|gb|EFX81363.1| hypothetical protein DAPPUDRAFT_303461 [Daphnia pulex] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query529
FB|FBgn0033235556 CG8728 [Drosophila melanogaste 0.880 0.838 0.576 1.7e-146
UNIPROTKB|F1PF09526 PMPCA "Uncharacterized protein 0.890 0.895 0.522 7.1e-132
UNIPROTKB|Q10713525 PMPCA "Mitochondrial-processin 0.890 0.897 0.514 2.4e-131
MGI|MGI:1918568524 Pmpca "peptidase (mitochondria 0.890 0.898 0.518 3.1e-131
UNIPROTKB|Q68FX8524 Pmpca "Peptidase (Mitochondria 0.890 0.898 0.518 3.9e-131
UNIPROTKB|Q0P5M8525 PMPCA "Mitochondrial-processin 0.890 0.897 0.516 4.5e-130
UNIPROTKB|Q5ZJ49519 PMPCA "Uncharacterized protein 0.890 0.907 0.514 1.5e-129
ZFIN|ZDB-GENE-030131-5809517 pmpca "peptidase (mitochondria 0.888 0.909 0.503 1.1e-128
UNIPROTKB|F1M964522 Pmpca "Mitochondrial-processin 0.888 0.900 0.496 3.6e-121
RGD|727897524 Pmpca "peptidase (mitochondria 0.892 0.900 0.490 7.4e-121
FB|FBgn0033235 CG8728 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1431 (508.8 bits), Expect = 1.7e-146, P = 1.7e-146
 Identities = 270/468 (57%), Positives = 346/468 (73%)

Query:    49 LPKVHYSCVKDNDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHF 108
             LP+  Y+        T+VTTLPNGLR+ASE R+G FCT+G++IDSG RYE  YPSGVSHF
Sbjct:    79 LPEAVYAAPLAESAITKVTTLPNGLRIASEPRYGQFCTVGLVIDSGPRYEVAYPSGVSHF 138

Query:   109 LEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVV 168
             LEKLAFNST  + NKDAI + LEK GGICDC SSRDT IYAAS  +  +D+V ++L DV 
Sbjct:   139 LEKLAFNSTVNFPNKDAILKELEKNGGICDCQSSRDTLIYAASIDSRAIDSVTRLLADVT 198

Query:   169 LRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIG 228
             LRP  S++E+++AR+ + FELE   MRPEQE +LMDMIHAAA++DNTLGLPKLCP  ++ 
Sbjct:   199 LRPTLSDQEVSLARRAVNFELETLGMRPEQEPILMDMIHAAAFRDNTLGLPKLCPLENLD 258

Query:   229 VINNNTLFTYLKNYYTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPV 288
              IN N L  YLK +++P RMV+AG+GV+H+ LV    +YFV+ + +W + ++L  +    
Sbjct:   259 HINRNVLMNYLKYHHSPKRMVIAGVGVDHDELVSHVQRYFVEDKAIW-ETEALEDSGPKQ 317

Query:   289 IDTSSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMXX 348
             +DTS A YTGG+VKE+C IP +A  +GLPEL+HV++G EG SHQD DFVP CVLNI+M  
Sbjct:   318 VDTSIAQYTGGLVKEQCEIPIYAA-AGLPELAHVILGFEGCSHQDKDFVPLCVLNIMMGG 376

Query:   349 XXXXXXXXXXXXMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVD 408
                         MY+RLYT VLNR+HWM+SATAYNHAY D GLFC+H SAPP ++ ++V+
Sbjct:   377 GGSFSAGGPGKGMYSRLYTKVLNRYHWMYSATAYNHAYGDCGLFCVHGSAPPQHMNDMVE 436

Query:   409 VLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYI 468
             VL +E++ MA     +EL R+K QLQSMLLMNLE+RP VFEDVGRQVL TG RKRP  +I
Sbjct:   437 VLTREMMGMAAEPGREELMRSKIQLQSMLLMNLESRPVVFEDVGRQVLVTGQRKRPQHFI 496

Query:   469 ESIENVTEDDIRRVASRLLTSQPSVAARGELINFPSYEDIHSGIQNNG 516
             + IE+VT  DI+RVA RLL+S PSVAARG++ N P    I + +  +G
Sbjct:   497 KEIESVTAADIQRVAQRLLSSPPSVAARGDIHNLPEMSHITNAVSGSG 544
GO:0004222 "metalloendopeptidase activity" evidence=ISS
GO:0016485 "protein processing" evidence=ISS
GO:0005759 "mitochondrial matrix" evidence=ISS
GO:0006508 "proteolysis" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
UNIPROTKB|F1PF09 PMPCA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q10713 PMPCA "Mitochondrial-processing peptidase subunit alpha" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1918568 Pmpca "peptidase (mitochondrial processing) alpha" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q68FX8 Pmpca "Peptidase (Mitochondrial processing) alpha, isoform CRA_a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q0P5M8 PMPCA "Mitochondrial-processing peptidase subunit alpha" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJ49 PMPCA "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5809 pmpca "peptidase (mitochondrial processing) alpha" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1M964 Pmpca "Mitochondrial-processing peptidase subunit alpha" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|727897 Pmpca "peptidase (mitochondrial processing) alpha" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O94745MPPA_SCHPO3, ., 4, ., 2, 4, ., 6, 40.35790.77690.8187yesN/A
Q0P5M8MPPA_BOVIN3, ., 4, ., 2, 4, ., 6, 40.55030.90350.9104yesN/A
Q42290MPPB_ARATH3, ., 4, ., 2, 4, ., 6, 40.30130.78820.7853yesN/A
Q5R513MPPA_PONAB3, ., 4, ., 2, 4, ., 6, 40.53330.93000.9371yesN/A
Q9DC61MPPA_MOUSE3, ., 4, ., 2, 4, ., 6, 40.55030.90350.9122yesN/A
P11914MPPA_YEAST3, ., 4, ., 2, 4, ., 6, 40.39190.80520.8838yesN/A
Q10713MPPA_HUMAN3, ., 4, ., 2, 4, ., 6, 40.52740.93000.9371yesN/A
P20069MPPA_RAT3, ., 4, ., 2, 4, ., 6, 40.52340.89600.9045noN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.24.64LOW CONFIDENCE prediction!
3rd Layer3.4.240.963

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query529
COG0612438 COG0612, PqqL, Predicted Zn-dependent peptidases [ 1e-68
pfam00675149 pfam00675, Peptidase_M16, Insulinase (Peptidase fa 1e-39
pfam05193182 pfam05193, Peptidase_M16_C, Peptidase M16 inactive 3e-29
COG1025 937 COG1025, Ptr, Secreted/periplasmic Zn-dependent pe 0.004
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information 
 Score =  226 bits (579), Expect = 1e-68
 Identities = 121/435 (27%), Positives = 201/435 (46%), Gaps = 34/435 (7%)

Query: 60  NDRNTQVTTLPNGLRVASENRFGS-FCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTS 118
                QV TLPNGLRV +     +   ++ V + +GSR E    +G++HFLE +AF  T+
Sbjct: 13  ALPGLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTT 72

Query: 119 EYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEI 178
              + + +A++ EK+GG  +  +S D  +Y  S     LD  + +L D++L P F EEE+
Sbjct: 73  GLPSAE-LAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEV 131

Query: 179 NMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTY 238
              +  I  E+   Q  P+   L  + +  A Y ++ LG P L    SI  I    L  +
Sbjct: 132 EREKGVILEEIRMRQDDPDD--LAFERLLEALYGNHPLGRPILGTEESIEAITREDLKDF 189

Query: 239 LKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYT 297
            + +Y P  MV+  +G V+ E +VE   KYF D                P I        
Sbjct: 190 YQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPG---------AAPPPKIPPEPPLGP 240

Query: 298 GGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGP 357
             +V+             L E + + +G  G  +  PD   A +L   + GGG  S    
Sbjct: 241 ERVVRVN-----DPEQPDL-EQAWLALGYPGPDYDSPDDYAALLLLNGLLGGGFSS---- 290

Query: 358 GKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTM 417
                 RL+  +  +    +S ++++   +D+GLF I+A   P N +   +++ + L  +
Sbjct: 291 ------RLFQELREKRGLAYSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEILKAL 344

Query: 418 A----GPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIEN 473
                GP   +EL  AK+ L  +LL++L++  ++ E +G+ +L  G        +E IE 
Sbjct: 345 KKGLKGPFTEEELDAAKQLLIGLLLLSLDSPSSIAELLGQYLLLGGSLITLEELLERIEA 404

Query: 474 VTEDDIRRVASRLLT 488
           VT +D+  VA +LL 
Sbjct: 405 VTLEDVNAVAKKLLA 419

Length = 438
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16) Back     alignment and domain information
>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain Back     alignment and domain information
>gnl|CDD|223956 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 529
KOG2067|consensus472 100.0
KOG0960|consensus467 100.0
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 100.0
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 100.0
PRK15101 961 protease3; Provisional 100.0
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 100.0
PTZ00432 1119 falcilysin; Provisional 100.0
KOG2583|consensus429 100.0
KOG0959|consensus 974 100.0
PRK15101961 protease3; Provisional 100.0
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 99.96
KOG2019|consensus 998 99.93
COG1025937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.91
KOG0961|consensus 1022 99.9
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 99.9
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 99.88
KOG0959|consensus974 99.84
COG1026978 Predicted Zn-dependent peptidases, insulinase-like 99.81
PTZ004321119 falcilysin; Provisional 99.74
KOG2019|consensus998 99.66
KOG0961|consensus1022 99.14
PF03410 590 Peptidase_M44: Protein G1; InterPro: IPR005072 In 98.04
PHA03081 595 putative metalloprotease; Provisional 97.85
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 97.84
COG0612 438 PqqL Predicted Zn-dependent peptidases [General fu 97.83
PF08367248 M16C_assoc: Peptidase M16C associated; InterPro: I 97.32
KOG0960|consensus467 96.04
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 95.99
KOG2067|consensus472 93.91
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 83.36
>KOG2067|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.7e-80  Score=578.99  Aligned_cols=450  Identities=57%  Similarity=0.948  Sum_probs=430.6

Q ss_pred             CCCCeEEEEcCCCCEEEEEecCCCeeEEEEEEecCCCCCCCCCCCHHHHHHHhhhcCCCCCCCHHHHHHHHHHhCCEeEE
Q psy8066          60 NDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDC  139 (529)
Q Consensus        60 ~~~~~~~~~L~NGl~v~~~~~~~~~~~~~l~v~~G~~~e~~~~~Gla~lle~l~~~gt~~~~~~~~l~~~l~~~g~~~~~  139 (529)
                      +..+++..+|+||++|..+++.++.+++++++++|+++|.....|++||+|+|+|++|.++++. ++...||.+|+.+.|
T Consensus        21 ~~~~~kvttL~NGlkvase~~pg~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~-ei~~~LE~~GGn~~c   99 (472)
T KOG2067|consen   21 EPSNTKVTTLPNGLKVASENTPGQFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSK-EILAELEKLGGNCDC   99 (472)
T ss_pred             ccccceeeecCCccEEeccCCCCCceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHH-HHHHHHHHhCCcccc
Confidence            5567899999999999999999999999999999999999999999999999999999999776 999999999999999


Q ss_pred             eeccceeEEEEEeCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhccCCCCCCCC
Q psy8066         140 LSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLP  219 (529)
Q Consensus       140 ~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~l~~~~~~~~~  219 (529)
                      ++++|.+.|.+++.+++++..+++|+|.+.+|.|++++++.+|..+..|++....+|  +..+.+.+|.+.|.+++++.+
T Consensus       100 qsSRetm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~P--e~lL~e~iH~Aay~~ntlg~p  177 (472)
T KOG2067|consen  100 QSSRETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELWMRP--EPLLTEMIHSAAYSGNTLGLP  177 (472)
T ss_pred             cccHhhhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccccCc--hhhHHHHHHHHHhccCccccc
Confidence            999999999999999999999999999999999999999999999999999998888  689999999999999999999


Q ss_pred             CCCCccccCCCCHHHHHHHHHhhccCCCeEEEEecCCHHHHHHHHHhhhccCCCccccccccccCCCCCCCCCCCcccCC
Q psy8066         220 KLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGG  299 (529)
Q Consensus       220 ~~g~~~~l~~it~~~l~~f~~~~~~~~~~~l~i~G~~~~~l~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (529)
                      .+|+.+.+..|+.+.|.+|.+++|+|.+|+++.+|+++|++++.+++||+.+|..    .      .++++.++++|+|+
T Consensus       178 l~cp~~~i~~I~~~~l~~yl~~~ytp~rmVlA~vGV~heelv~~~~~~~~~~~s~----~------~p~i~~~~aQYtGG  247 (472)
T KOG2067|consen  178 LLCPEENIDKINREVLEEYLKYFYTPERMVLAGVGVEHEELVEIAEKLLGDLPST----K------VPPIDESKAQYTGG  247 (472)
T ss_pred             ccCChhhhhhhhHHHHHHHHHhcCChhheEeeecCCCHHHHHHHHHHHhccCCcc----C------CCCcccchhhcccc
Confidence            9999999999999999999999999999999999999999999999999996643    1      45677778999999


Q ss_pred             eeEEecCCCCCCCCCCCCCceeEEEEecCCCCCCCCcHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCceEEE
Q psy8066         300 IVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSA  379 (529)
Q Consensus       300 ~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~~~~f~~~~~~~g~~srL~~~lR~~~gl~Y~v  379 (529)
                      ...++++.+...+   .++.+||+++|.+++++++|++++.+|+.+||||++||||||||||+||||.++.++++|.|++
T Consensus       248 ~~~~~~d~~~~~~---g~EltHv~lg~Eg~~~~deD~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sc  324 (472)
T KOG2067|consen  248 ELKIDTDAPQVTG---GPELTHVVLGFEGCSWNDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSC  324 (472)
T ss_pred             ccccCCCCccccC---ccceeeeeEeeccCCCCChhHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHh
Confidence            9988887765442   2478999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeccccCccceEEEEEEeCCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcC
Q psy8066         380 TAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATG  459 (529)
Q Consensus       380 ~a~~~~~~~~g~~~i~~~~~~~~~~~~i~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  459 (529)
                      .|++..|.++|+|+|+.+++|+++.+++..+.+++-.+..+++++|++|||+++++.+.++.|+....++++++|++..|
T Consensus       325 tAfnhsy~DtGlfgi~~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~~g  404 (472)
T KOG2067|consen  325 TAFNHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLTTG  404 (472)
T ss_pred             hhhhccccCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHhcc
Confidence            99999999999999999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             CCCChhHHHHHhccCCHHHHHHHHHHhccCCCeEEEEcCCCCCCCHHHHHHHhh-cCCCCCCceeec
Q psy8066         460 HRKRPSTYIESIENVTEDDIRRVASRLLTSQPSVAARGELINFPSYEDIHSGIQ-NNGVLPRKGRIS  525 (529)
Q Consensus       460 ~~~~~~~~~~~i~~vT~edi~~~a~~~l~~~~~~~vvG~~~~~p~~~~~~~~~~-~~~~~~~~~~~~  525 (529)
                      .+..++++++.|+++|++||.++++++|..+++++..||.+.+|+++.|.++++ +||++.|+++||
T Consensus       405 ~rk~p~e~~~~Ie~lt~~DI~rva~kvlt~~p~va~~Gd~~~lpt~~~i~~~~~~~d~~l~r~~~lf  471 (472)
T KOG2067|consen  405 ERKPPDEFIKKIEQLTPSDISRVASKVLTGKPSVAAFGDGTGLPTYDHIGNAVSSGDGRLLRTYGLF  471 (472)
T ss_pred             CcCCHHHHHHHHHhcCHHHHHHHHHHHhcCCceeccCCcccCCcchhhhhhhcccCcchhhhhhccc
Confidence            999999999999999999999999999999999999999999999999999999 999999999987

>KOG0960|consensus Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>KOG2583|consensus Back     alignment and domain information
>KOG0959|consensus Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>KOG2019|consensus Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0961|consensus Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG0959|consensus Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>KOG2019|consensus Back     alignment and domain information
>KOG0961|consensus Back     alignment and domain information
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PHA03081 putative metalloprotease; Provisional Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG0960|consensus Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>KOG2067|consensus Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query529
1hr6_A475 Yeast Mitochondrial Processing Peptidase Length = 4 1e-73
1hr6_B443 Yeast Mitochondrial Processing Peptidase Length = 4 8e-43
1hr7_B443 Yeast Mitochondrial Processing Peptidase Beta-E73q 2e-42
1bcc_A446 Cytochrome Bc1 Complex From Chicken Length = 446 4e-42
3cwb_B441 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 1e-41
3bcc_B422 Stigmatellin And Antimycin Bound Cytochrome Bc1 Com 7e-40
1bcc_B422 Cytochrome Bc1 Complex From Chicken Length = 422 1e-39
1bgy_A446 Cytochrome Bc1 Complex From Bovine Length = 446 9e-39
1sqb_A480 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 9e-39
1qcr_A446 Crystal Structure Of Bovine Mitochondrial Cytochrom 1e-38
1qcr_B423 Crystal Structure Of Bovine Mitochondrial Cytochrom 3e-38
1bgy_B439 Cytochrome Bc1 Complex From Bovine Length = 439 3e-38
1sqb_B453 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 4e-38
3cwb_A446 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 6e-38
3hdi_A421 Crystal Structure Of Bacillus Halodurans Metallo Pe 2e-31
1ezv_A430 Structure Of The Yeast Cytochrome Bc1 Complex Co- C 3e-11
1kb9_A431 Yeast Cytochrome Bc1 Complex Length = 431 2e-10
3eoq_A406 The Crystal Structure Of Putative Zinc Protease Bet 2e-09
3amj_C437 The Crystal Structure Of The Heterodimer Of M16b Pe 5e-08
3ami_A445 The Crystal Structure Of The M16b Metallopeptidase 5e-08
3amj_B424 The Crystal Structure Of The Heterodimer Of M16b Pe 2e-07
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase Length = 475 Back     alignment and structure 
Iteration: 1

 Score =  273 bits (699), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 159/440 (36%), Positives = 239/440 (54%), Gaps = 22/440 (5%)
Query: 63  NTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVN 122
           N ++++L NGL+VA+ N  G F  +G+ ID+GSR+E     G +H L++LAF ST E+V 
Sbjct: 5   NFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKST-EHVE 63
Query: 123 KDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMAR 182
             A+A++LE +GG   C SSR+  +Y AS     +  +++++ + V  PK +E+E+   +
Sbjct: 64  GRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQK 123
Query: 183 QTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNY 242
            + ++E++   M+PE   +L +++H AAY   TLG P +CP   I  I+   L  Y   +
Sbjct: 124 LSAEYEIDEVWMKPE--LVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKF 181
Query: 243 YTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIVK 302
           YTP   V A +GV HE  +E   KY  D Q           +  P I    A YTGG   
Sbjct: 182 YTPENTVAAFVGVPHEKALELTGKYLGDWQ-----------STHPPITKKVAQYTGG--- 227
Query: 303 EECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMXXXXXXXXXXXXXXMY 362
           E C IP       LPEL H+ IG EG+    PD      L  L+              MY
Sbjct: 228 ESC-IPPAPVFGNLPELFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMY 286
Query: 363 TRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAGPID 422
           +RLYT+VLN+++++ +  A+NH+Y+D+G+F I  S  P      V+V+ +++       D
Sbjct: 287 SRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKD 346
Query: 423 ----ADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDD 478
                DE+SRAK QL+S LLMNLE++    ED+GRQVL  G +   +  I  IE++  DD
Sbjct: 347 LRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDD 406
Query: 479 IRRVASRLLTSQPSVAARGE 498
           I RVA  + T   + A  G+
Sbjct: 407 ISRVAEMIFTGNVNNAGNGK 426
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase Length = 443 Back     alignment and structure
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Length = 443 Back     alignment and structure
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken Length = 446 Back     alignment and structure
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 441 Back     alignment and structure
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine Length = 446 Back     alignment and structure
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 480 Back     alignment and structure
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 446 Back     alignment and structure
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 423 Back     alignment and structure
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine Length = 439 Back     alignment and structure
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 453 Back     alignment and structure
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 446 Back     alignment and structure
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase Length = 421 Back     alignment and structure
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 430 Back     alignment and structure
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex Length = 431 Back     alignment and structure
>pdb|3EOQ|A Chain A, The Crystal Structure Of Putative Zinc Protease Beta- Subunit From Thermus Thermophilus Hb8 Length = 406 Back     alignment and structure
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase From Sphingomonas Sp. A1 Length = 437 Back     alignment and structure
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit From Sphingomonas Sp. A1 Length = 445 Back     alignment and structure
>pdb|3AMJ|B Chain B, The Crystal Structure Of The Heterodimer Of M16b Peptidase From Sphingomonas Sp. A1 Length = 424 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query529
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 0.0
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 1e-175
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 1e-171
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 1e-163
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 1e-157
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 1e-123
3eoq_A406 Putative zinc protease; two similar domains of bet 1e-91
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 3e-86
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 5e-66
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 1e-63
3gwb_A434 Peptidase M16 inactive domain family protein; pept 3e-57
3go9_A492 Insulinase family protease; IDP00573, structural g 7e-31
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 4e-30
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 1e-20
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 1e-16
3cww_A990 Insulysin, insulin-degrading enzyme, insulinase; A 2e-06
3ih6_A197 Putative zinc protease; bordetella pertussis toham 8e-15
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 1e-13
2fge_A995 Atprep2;, zinc metalloprotease (insulinase family) 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 1e-07
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Length = 475 Back     alignment and structure
 Score =  519 bits (1338), Expect = 0.0
 Identities = 175/481 (36%), Positives = 260/481 (54%), Gaps = 38/481 (7%)

Query: 63  NTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVN 122
           N ++++L NGL+VA+ N  G F  +G+ ID+GSR+E     G +H L++LAF ST     
Sbjct: 5   NFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHV-E 63

Query: 123 KDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMAR 182
             A+A++LE +GG   C SSR+  +Y AS     +  +++++ + V  PK +E+E+   +
Sbjct: 64  GRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQK 123

Query: 183 QTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNY 242
            + ++E++   M+PE   +L +++H AAY   TLG P +CP   I  I+   L  Y   +
Sbjct: 124 LSAEYEIDEVWMKPEL--VLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKF 181

Query: 243 YTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIVK 302
           YTP   V A +GV HE  +E   KY  D Q              P I    A YTGG   
Sbjct: 182 YTPENTVAAFVGVPHEKALELTGKYLGDWQS-----------THPPITKKVAQYTGG--- 227

Query: 303 EECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMY 362
            E  IP       LPEL H+ IG EG+    PD      L  L+GGGGSFSAGGPGKGMY
Sbjct: 228 -ESCIPPAPVFGNLPELFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMY 286

Query: 363 TRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMA---- 418
           +RLYT+VLN+++++ +  A+NH+Y+D+G+F I  S  P      V+V+ +++        
Sbjct: 287 SRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKD 346

Query: 419 GPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDD 478
             +  DE+SRAK QL+S LLMNLE++    ED+GRQVL  G +   +  I  IE++  DD
Sbjct: 347 LRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDD 406

Query: 479 IRRVASRLLTSQ----------PSVAARGELINFPSYEDI--HSGIQN----NGVLPRKG 522
           I RVA  + T             +V  +G+  +F   E++    G+ N        P+K 
Sbjct: 407 ISRVAEMIFTGNVNNAGNGKGRATVVMQGDRGSFGDVENVLKAYGLGNSSSSKNDSPKKK 466

Query: 523 R 523
            
Sbjct: 467 G 467
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Length = 439 Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Length = 446 Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Length = 443 Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Length = 431 Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Length = 421 Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Length = 406 Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Length = 352 Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Length = 424 Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Length = 425 Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Length = 434 Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Length = 492 Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Length = 445 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Length = 197 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 995 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 995 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Length = 1193 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query529
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 100.0
3eoq_A406 Putative zinc protease; two similar domains of bet 100.0
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 100.0
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 100.0
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 100.0
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 100.0
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 100.0
3gwb_A434 Peptidase M16 inactive domain family protein; pept 100.0
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 100.0
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 100.0
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 100.0
3go9_A492 Insulinase family protease; IDP00573, structural g 100.0
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 100.0
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 100.0
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 100.0
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 100.0
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 100.0
1q2l_A939 Protease III; hydrolase; 2.20A {Escherichia coli s 100.0
2fge_A995 Atprep2;, zinc metalloprotease (insulinase family) 100.0
3cww_A990 Insulysin, insulin-degrading enzyme, insulinase; A 100.0
3s5m_A1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 99.96
3ih6_A197 Putative zinc protease; bordetella pertussis toham 99.91
3ih6_A197 Putative zinc protease; bordetella pertussis toham 98.26
3amj_B 424 Zinc peptidase inactive subunit; alpha/beta, zinc 98.09
3hdi_A 421 Processing protease; CAGE structure, M16B peptidas 97.99
3cx5_A 431 Cytochrome B-C1 complex subunit 1, mitochondrial; 97.98
3eoq_A 406 Putative zinc protease; two similar domains of bet 97.98
3cx5_B 352 Cytochrome B-C1 complex subunit 2, mitochondrial; 97.93
1hr6_B 443 Beta-MPP, mitochondrial processing peptidase beta 97.91
3gwb_A 434 Peptidase M16 inactive domain family protein; pept 97.85
3ami_A 445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 97.8
1pp9_A 446 Ubiquinol-cytochrome C reductase complex core Pro 97.79
1pp9_B 439 Ubiquinol-cytochrome C reductase complex core Pro 97.76
3d3y_A 425 Uncharacterized protein; APC29635, conserved prote 97.75
1hr6_A 475 Alpha-MPP, mitochondrial processing peptidase alph 97.61
3go9_A492 Insulinase family protease; IDP00573, structural g 95.65
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
Probab=100.00  E-value=4.2e-63  Score=519.91  Aligned_cols=435  Identities=39%  Similarity=0.661  Sum_probs=388.9

Q ss_pred             CCCeEEEEcCCCCEEEEEecCCCeeEEEEEEecCCCCCCCCCCCHHHHHHHhhhcCCCCCCCHHHHHHHHHHhCCEeEEe
Q psy8066          61 DRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCL  140 (529)
Q Consensus        61 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~l~v~~G~~~e~~~~~Gla~lle~l~~~gt~~~~~~~~l~~~l~~~g~~~~~~  140 (529)
                      ++.++.++|+||++|++.+.+.+.+++.+++++|+++|++++.|++||+|||+|+||.++ +..++.+.++.+|+.+|++
T Consensus         3 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~-~~~~~~~~le~~G~~~na~   81 (475)
T 1hr6_A            3 TDNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHV-EGRAMAETLELLGGNYQCT   81 (475)
T ss_dssp             TTCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTB-CHHHHHHHHHHTTSCEEEE
T ss_pred             CCCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCC-CHHHHHHHHHHcCCEEEEE
Confidence            467799999999999988777799999999999999999999999999999999999998 6789999999999999999


Q ss_pred             eccceeEEEEEeCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhccCCCCCCCCC
Q psy8066         141 SSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPK  220 (529)
Q Consensus       141 t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~l~~~~~~~~~~  220 (529)
                      |+.+.|.|++++++++++.+|++|.|++.+|.|++++|+++|..+++|+++..++|  ...+.+.++..+|++|||+++.
T Consensus        82 t~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~  159 (475)
T 1hr6_A           82 SSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKP--ELVLPELLHTAAYSGETLGSPL  159 (475)
T ss_dssp             ECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHTTTSGGGSCS
T ss_pred             EccCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCH--HHHHHHHHHHHhcCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999877766  6899999999999999999999


Q ss_pred             CCCccccCCCCHHHHHHHHHhhccCCCeEEEEecCCHHHHHHHHHhhhccCCCccccccccccCCCCCCCCCCCcccCCe
Q psy8066         221 LCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGI  300 (529)
Q Consensus       221 ~g~~~~l~~it~~~l~~f~~~~~~~~~~~l~i~G~~~~~l~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (529)
                      +|+.++|++++.++|++||++||+|+||+++++|+++++++++++++|+.+|.....         +..  ..+.+.++.
T Consensus       160 ~G~~~~l~~it~~~l~~f~~~~y~p~n~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~---------~~~--~~~~~~~~~  228 (475)
T 1hr6_A          160 ICPRGLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPP---------ITK--KVAQYTGGE  228 (475)
T ss_dssp             SCCGGGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCC---------CCC--CCCCCCCEE
T ss_pred             cCCHHHHhhcCHHHHHHHHHHhCCcccEEEEEeCCCHHHHHHHHHHHhccCCCCCCC---------CCC--CCCCCcCCe
Confidence            999999999999999999999999999999999999999999999999996543110         000  112233333


Q ss_pred             eEEecCCCCCCCCCCCCCceeEEEEecCCCCCCCCcHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCceEEEe
Q psy8066         301 VKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSAT  380 (529)
Q Consensus       301 ~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~~~~f~~~~~~~g~~srL~~~lR~~~gl~Y~v~  380 (529)
                      ..+... +..   .+..+++++.++|+++++++++.+++.|++.|||++++|++||||+||.++||++||+++|++|+++
T Consensus       229 ~~~~~~-~~~---~~~~~~~~v~~~~~~~~~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~  304 (475)
T 1hr6_A          229 SCIPPA-PVF---GNLPELFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCV  304 (475)
T ss_dssp             EEECCC-CCC---SSSCCCEEEEEEEECCCTTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEE
T ss_pred             EEEecc-ccc---CCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEE
Confidence            333321 000   0013678999999988888899999999999999999999999999999999999999999999999


Q ss_pred             eeccccCccceEEEEEEeCCCCHHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Q psy8066         381 AYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAG----PIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVL  456 (529)
Q Consensus       381 a~~~~~~~~g~~~i~~~~~~~~~~~~i~~i~~~l~~l~~----~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~~  456 (529)
                      +++..+.+.|.|.|++.++|++++++++.+.++++++.+    ++|++||+++|+.++.++....+++..+++.++.+++
T Consensus       305 s~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~  384 (475)
T 1hr6_A          305 AFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVL  384 (475)
T ss_dssp             EEEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             EeccccCCCceEEEEEEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            998888888999999999999999999999999999976    5999999999999999999999999999999998766


Q ss_pred             hcCCCCChhHHHHHhccCCHHHHHHHHHHhccC----------CCeEEEEcCCCCCCCHHHHHHHhh
Q psy8066         457 ATGHRKRPSTYIESIENVTEDDIRRVASRLLTS----------QPSVAARGELINFPSYEDIHSGIQ  513 (529)
Q Consensus       457 ~~~~~~~~~~~~~~i~~vT~edi~~~a~~~l~~----------~~~~~vvG~~~~~p~~~~~~~~~~  513 (529)
                      ..|.....+++.+.|++||++||++++++++.+          +++++++|+...+|..+++.+.+.
T Consensus       385 ~~g~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~  451 (475)
T 1hr6_A          385 MHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDRGSFGDVENVLKAYG  451 (475)
T ss_dssp             HHSCCCCHHHHHHHHHTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCGGGGCCHHHHHHHTT
T ss_pred             hcCCCCCHHHHHHHHHcCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCcccCcCHHHHHHHhc
Confidence            567665688999999999999999999999987          689999999999999999999998
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 529
d1hr6a2237 d.185.1.1 (A:234-470) Mitochondrial processing pep 7e-46
d1ppja2209 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1e-38
d1hr6b2217 d.185.1.1 (B:246-462) Mitochondrial processing pep 2e-38
d1ppjb2204 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2e-38
d3cx5a2218 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 5e-36
d1ppjb1219 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 2e-32
d1hr6a1220 d.185.1.1 (A:14-233) Mitochondrial processing pept 3e-28
d3cx5a1213 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 3e-27
d1ppja1232 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 5e-27
d3cx5b1202 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 7e-25
d1hr6b1222 d.185.1.1 (B:24-245) Mitochondrial processing pept 1e-22
d1q2la4240 d.185.1.1 (A:24-263) Protease III {Escherichia col 2e-20
d2fgea4257 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 5e-20
d3cx5b2150 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2e-19
d2fgea2196 d.185.1.1 (A:798-993) Presequence protease 1, PREP 6e-10
d1q2la1229 d.185.1.1 (A:504-732) Protease III {Escherichia co 0.002
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Mitochondrial processing peptidase (MPP) alpha chain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  158 bits (401), Expect = 7e-46
 Identities = 93/229 (40%), Positives = 128/229 (55%), Gaps = 18/229 (7%)

Query: 294 ATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFS 353
           A YTGG    E  IP       LPEL H+ IG EG+    PD      L  L+GGGGSFS
Sbjct: 2   AQYTGG----ESCIPPAPVFGNLPELFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFS 57

Query: 354 AGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVK- 412
           AGGPGKGMY+RLYT+VLN+++++ +  A+NH+Y+D+G+F I  S  P      V+V+ + 
Sbjct: 58  AGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQ 117

Query: 413 ---ELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIE 469
                      +  DE+SRAK QL+S LLMNLE++    ED+GRQVL  G +   +  I 
Sbjct: 118 MYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMIS 177

Query: 470 SIENVTEDDIRRVASRLLTSQPSVAARG----------ELINFPSYEDI 508
            IE++  DDI RVA  + T   + A  G          +  +F   E++
Sbjct: 178 KIEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDRGSFGDVENV 226
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 209 Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 217 Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 204 Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 218 Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 219 Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 220 Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 232 Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 202 Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Length = 240 Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 257 Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150 Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 196 Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Length = 229 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query529
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 100.0
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 100.0
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 100.0
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 100.0
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 100.0
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 100.0
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 100.0
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 100.0
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 99.98
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.97
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.96
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 99.96
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.95
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 99.89
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 99.8
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 99.62
d3cx5b2150 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.15
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 98.78
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 98.52
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 98.52
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 98.44
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 98.37
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.35
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 98.34
d1q2la3240 Protease III {Escherichia coli [TaxId: 562]} 98.28
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 98.25
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 98.2
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 98.14
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 98.08
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 98.08
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 98.05
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.02
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 97.92
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 97.16
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 96.67
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 95.56
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 90.87
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 86.86
d1q2la3240 Protease III {Escherichia coli [TaxId: 562]} 81.45
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.7e-37  Score=284.73  Aligned_cols=209  Identities=28%  Similarity=0.491  Sum_probs=196.9

Q ss_pred             CCeEEEEcCCCCEEEEEecCCCeeEEEEEEecCCCCCCCCCCCHHHHHHHhhhcCCCCCCCHHHHHHHHHHhCCEeEEee
Q psy8066          62 RNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLS  141 (529)
Q Consensus        62 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~v~~G~~~e~~~~~Gla~lle~l~~~gt~~~~~~~~l~~~l~~~g~~~~~~t  141 (529)
                      ++++..+|+||++|++.++.+|.+++++++++|+++|+++..|++||++||++.|+.++ +..++.+.++.+|+.+++++
T Consensus         6 ~~~~~~~L~NGl~v~~~~~~~p~v~i~~~v~~Gs~~e~~~~~G~ahlle~l~~~gt~~~-s~~~i~~~~~~~G~~~n~~t   84 (219)
T d1ppjb1           6 QDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGA-SSFKITRGIEAVGGKLSVTS   84 (219)
T ss_dssp             CCCEEEECTTSCEEEEECCCCSEEEEEEEESCSGGGCCTTSTTHHHHHHHCTTSCBSSS-CHHHHHHHHHHTTCEEEEEE
T ss_pred             CceeEEECCCCCEEEEEeCCCCEEEEEEEEcccccccCCCCccHHHHHHHHHhhccccc-hhHHHHHHHHHhccchhhhh
Confidence            45799999999999988888899999999999999999999999999999999999986 67899999999999999999


Q ss_pred             ccceeEEEEEeCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhccCCCCCCCCCC
Q psy8066         142 SRDTFIYAASAATSGLDTVMKILGDVVLRPKFSEEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKL  221 (529)
Q Consensus       142 ~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~  221 (529)
                      +++.+.|++++++++++.+|++|.+++.+|.|++++++++|+.+..+++....+|  ...+.+.+++.+|+ ++++++..
T Consensus        85 ~~d~t~~~~~~~~~~~~~~l~ll~~~l~~p~~~~~~~~~~~~~i~~e~~~~~~~p--~~~~~~~l~~~~f~-~~~~~~~~  161 (219)
T d1ppjb1          85 TRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNP--QAHVIENLHAAAYR-NALANSLY  161 (219)
T ss_dssp             CSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHTHHHHHHHHHHTTSH--HHHHHHHHHHHHBS-SGGGSCSS
T ss_pred             hhheeeeeeeeecchhHHHHHHHHHhccCCcchhhhhhhhhHHHHHHHHHHhhcc--chHHHHHHHhhccc-ccccCCCc
Confidence            9999999999999999999999999999999999999999999999999888776  78999999999997 59999999


Q ss_pred             CCccccCCCCHHHHHHHHHhhccCCCeEEEEecCCHHHHHHHHHhhhccCCCcc
Q psy8066         222 CPPASIGVINNNTLFTYLKNYYTPTRMVVAGIGVEHEALVEAANKYFVDKQPVW  275 (529)
Q Consensus       222 g~~~~l~~it~~~l~~f~~~~~~~~~~~l~i~G~~~~~l~~~~~~~f~~l~~~~  275 (529)
                      |+.++|++++.++|++||++||+|+||+|+++|+++++++++++++|+ ++.++
T Consensus       162 g~~~~l~~it~~~l~~f~~~~y~p~n~~lv~~Gv~~~~l~~l~e~~~~-~~~g~  214 (219)
T d1ppjb1         162 CPDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLN-IRGGL  214 (219)
T ss_dssp             CCGGGTTTCCHHHHHHHHHHHSCGGGEEEEEESSCHHHHHHHHHHHCC-CCCCC
T ss_pred             CCHHHHhcCCHHHHHHHHHHhCCcccEEEEEEcCCHHHHHHHHHHhcC-CCCCC
Confidence            999999999999999999999999999999999999999999999885 55543
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure