Psyllid ID: psy8067

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
MAGRVFVLRSLGFKSIKGNHIQCSHFCSQAKPPPPSFQQPPLSTPLPGLPKVHYSCVKDNDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL
ccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEcccccEEEEEEEEEccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHcccEEccccccccEEEEEEEccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccHHHHccccHHHHHccc
ccHHHHHHHHccccccccccEEEEHccccccccccccccccccccccccccccccHHcccccccEEEEcccccEEEEEEccccEEEEEEEEcccccccccccccHHHHHHHHHcccEccccHHHHHHHHHHHccccEcccccHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccHHHHHHccHHHHHHHc
MAGRVFVLRSLgfksikgnhiqcshfcsqakppppsfqqpplstplpglpkvhyscvkdndrntqvttlpnglrvasenrfgsfctigviidsgsryeqpypsgvsHFLEKLAFnstseyvnKDAIAQSLEKIGgicdclssrDTFIYAASAATSGLDTVMKILGDvvlrpkfskEEINMARQTIQFELenyqmrpeQETLLMDMIHAAAykdntlglpklcppasigvinnntlftyl
MAGRVFVLRSLGFKSIKGNHIQCSHFCSQAKPPPPSFQQPPLSTPLPGLPKVHYSCVKDndrntqvttlpnglrvasenrfgSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKlcppasigvinnntLFTYL
MAGRVFVLRSLGFKSIKGNHIQCSHFCSQAKppppsfqqpplstplpGLPKVHYSCVKDNDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL
****VFVLRSLGFKSIKGNHIQCSHFC************************VHYSCVKDNDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTY*
***************************************************************TQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL
MAGRVFVLRSLGFKSIKGNHIQCSHFCS***********PPLSTPLPGLPKVHYSCVKDNDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL
*****FVLRSLGFKSIKGNHIQCSHFCSQAKPPPPSFQQPPLSTPLPGLPKVHYSCVKDNDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAGRVFVLRSLGFKSIKGNHIQCSHFCSQAKPPPPSFQQPPLSTPLPGLPKVHYSCVKDNDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query239 2.2.26 [Sep-21-2011]
Q5R513 525 Mitochondrial-processing yes N/A 0.891 0.405 0.524 5e-65
Q10713 525 Mitochondrial-processing yes N/A 0.891 0.405 0.515 2e-64
Q0P5M8 525 Mitochondrial-processing yes N/A 0.832 0.379 0.56 5e-64
P20069 524 Mitochondrial-processing yes N/A 0.832 0.379 0.565 1e-63
Q9DC61 524 Mitochondrial-processing yes N/A 0.832 0.379 0.56 4e-63
P23955 577 Mitochondrial-processing N/A N/A 0.711 0.294 0.393 4e-32
P11914 482 Mitochondrial-processing yes N/A 0.757 0.375 0.356 7e-28
Q9CXT8 489 Mitochondrial-processing no N/A 0.723 0.353 0.363 9e-25
Q03346 489 Mitochondrial-processing no N/A 0.723 0.353 0.357 3e-24
P43264 494 Ubiquinol-cytochrome-c re N/A N/A 0.682 0.329 0.367 4e-24
>sp|Q5R513|MPPA_PONAB Mitochondrial-processing peptidase subunit alpha OS=Pongo abelii GN=PMPCA PE=2 SV=2 Back     alignment and function desciption
 Score =  247 bits (631), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 117/223 (52%), Positives = 163/223 (73%), Gaps = 10/223 (4%)

Query: 27  CSQAKPPPPSFQQ---------PPLSTPLPGLPKVHYSCVKDNDR-NTQVTTLPNGLRVA 76
           CS+ +  PP++++          PLS+PLPG+PK  ++ V   ++  T+VTTL NGLRVA
Sbjct: 20  CSRLRFGPPAYRRFSSGGAYPNIPLSSPLPGVPKPVFATVDGQEKFETKVTTLDNGLRVA 79

Query: 77  SENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGI 136
           S+N+FG FCT+G++I+SGSRYE  Y SG++HFLEKLAF+ST+ + +KD I  +LEK GGI
Sbjct: 80  SQNKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSSTARFDSKDEILLTLEKHGGI 139

Query: 137 CDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRP 196
           CDC +SRDT +YA SA + GLDTV+ +L DVVL+P+ + EE+ M R T+QFELE+  +RP
Sbjct: 140 CDCQTSRDTTMYAVSADSKGLDTVVGLLADVVLQPRLTDEEVEMTRMTVQFELEDLNLRP 199

Query: 197 EQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
           + E LL +MIH AAY++NT+GL + CP  +I  IN   L +YL
Sbjct: 200 DPEPLLTEMIHEAAYRENTVGLHRFCPTENIAKINREVLHSYL 242
Cleaves presequences (transit peptides) from mitochondrial protein precursors.
Pongo abelii (taxid: 9601)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: 6EC: 4
>sp|Q10713|MPPA_HUMAN Mitochondrial-processing peptidase subunit alpha OS=Homo sapiens GN=PMPCA PE=1 SV=2 Back     alignment and function description
>sp|Q0P5M8|MPPA_BOVIN Mitochondrial-processing peptidase subunit alpha OS=Bos taurus GN=PMPCA PE=2 SV=1 Back     alignment and function description
>sp|P20069|MPPA_RAT Mitochondrial-processing peptidase subunit alpha OS=Rattus norvegicus GN=Pmpca PE=1 SV=1 Back     alignment and function description
>sp|Q9DC61|MPPA_MOUSE Mitochondrial-processing peptidase subunit alpha OS=Mus musculus GN=Pmpca PE=1 SV=1 Back     alignment and function description
>sp|P23955|MPPA_NEUCR Mitochondrial-processing peptidase subunit alpha OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mpp PE=1 SV=2 Back     alignment and function description
>sp|P11914|MPPA_YEAST Mitochondrial-processing peptidase subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAS2 PE=1 SV=1 Back     alignment and function description
>sp|Q9CXT8|MPPB_MOUSE Mitochondrial-processing peptidase subunit beta OS=Mus musculus GN=Pmpcb PE=2 SV=1 Back     alignment and function description
>sp|Q03346|MPPB_RAT Mitochondrial-processing peptidase subunit beta OS=Rattus norvegicus GN=Pmpcb PE=1 SV=3 Back     alignment and function description
>sp|P43264|QCR1_EUGGR Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial OS=Euglena gracilis PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query239
346471969 581 hypothetical protein [Amblyomma maculatu 0.907 0.373 0.617 7e-76
241608598 530 mitochondrial processing peptidase alpha 0.887 0.4 0.632 4e-75
442751769 555 Putative mitochondrial-processing peptid 0.887 0.381 0.632 6e-75
242020148 556 mitochondrial-processing peptidase alpha 0.841 0.361 0.671 6e-75
322786971 543 hypothetical protein SINV_03489 [Solenop 0.924 0.406 0.590 7e-74
383865458 546 PREDICTED: mitochondrial-processing pept 0.836 0.366 0.65 8e-74
380019065 549 PREDICTED: mitochondrial-processing pept 0.836 0.364 0.65 2e-73
283135236 542 mitochondrial-processing peptidase subun 0.836 0.369 0.65 5e-73
350405550 553 PREDICTED: mitochondrial-processing pept 0.836 0.361 0.65 9e-73
340711063 551 PREDICTED: LOW QUALITY PROTEIN: mitochon 0.836 0.362 0.645 1e-72
>gi|346471969|gb|AEO35829.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information
 Score =  289 bits (740), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 137/222 (61%), Positives = 163/222 (73%), Gaps = 5/222 (2%)

Query: 23  CSH-----FCSQAKPPPPSFQQPPLSTPLPGLPKVHYSCVKDNDRNTQVTTLPNGLRVAS 77
           C H      C+   P P    + PLS PLPG PK  Y+    +D  T+VTTL NGLRVAS
Sbjct: 20  CRHSSQRALCTGGTPTPEQITRIPLSDPLPGFPKPRYAVPSAHDHATEVTTLDNGLRVAS 79

Query: 78  ENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGIC 137
            N+FG FCT+GV+IDSGSRYE PYPSG+SHFLEKLAFNST E+ ++DA+ Q LEK GGIC
Sbjct: 80  HNKFGQFCTVGVVIDSGSRYEAPYPSGISHFLEKLAFNSTREFRDQDAVLQELEKQGGIC 139

Query: 138 DCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPE 197
           DC  SRDT IYAASA   GLD VMK+LGDVVLRP F +EE+   RQTIQFEL++   +P+
Sbjct: 140 DCQGSRDTMIYAASADARGLDPVMKLLGDVVLRPLFKEEEVEKTRQTIQFELDDIDTKPD 199

Query: 198 QETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
           QE LL +MIHAAAY +NTLGLPKLCP  ++ +IN   L+TYL
Sbjct: 200 QEQLLFEMIHAAAYGNNTLGLPKLCPRENVPLINRQLLYTYL 241

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|241608598|ref|XP_002406607.1| mitochondrial processing peptidase alpha subunit, putative [Ixodes scapularis] gi|215502684|gb|EEC12178.1| mitochondrial processing peptidase alpha subunit, putative [Ixodes scapularis] Back     alignment and taxonomy information
>gi|442751769|gb|JAA68044.1| Putative mitochondrial-processing peptid [Ixodes ricinus] Back     alignment and taxonomy information
>gi|242020148|ref|XP_002430518.1| mitochondrial-processing peptidase alpha subunit, mitochondrial precursor, putative [Pediculus humanus corporis] gi|212515675|gb|EEB17780.1| mitochondrial-processing peptidase alpha subunit, mitochondrial precursor, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|322786971|gb|EFZ13195.1| hypothetical protein SINV_03489 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|383865458|ref|XP_003708190.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|380019065|ref|XP_003693437.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Apis florea] Back     alignment and taxonomy information
>gi|283135236|ref|NP_001164373.1| mitochondrial-processing peptidase subunit alpha [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|350405550|ref|XP_003487473.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|340711063|ref|XP_003394101.1| PREDICTED: LOW QUALITY PROTEIN: mitochondrial-processing peptidase subunit alpha-like [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query239
FB|FBgn0033235 556 CG8728 [Drosophila melanogaste 0.799 0.343 0.617 1.2e-60
UNIPROTKB|Q0P5M8 525 PMPCA "Mitochondrial-processin 0.803 0.365 0.549 3.7e-55
UNIPROTKB|Q10713 525 PMPCA "Mitochondrial-processin 0.803 0.365 0.544 6.1e-55
RGD|727897 524 Pmpca "peptidase (mitochondria 0.803 0.366 0.554 9.9e-55
UNIPROTKB|F1M964 522 Pmpca "Mitochondrial-processin 0.803 0.367 0.554 9.9e-55
UNIPROTKB|Q68FX8 524 Pmpca "Peptidase (Mitochondria 0.803 0.366 0.554 9.9e-55
MGI|MGI:1918568 524 Pmpca "peptidase (mitochondria 0.803 0.366 0.549 2.6e-54
UNIPROTKB|Q5ZJ49 519 PMPCA "Uncharacterized protein 0.803 0.369 0.544 4.3e-54
UNIPROTKB|F1PF09 526 PMPCA "Uncharacterized protein 0.803 0.365 0.544 7e-54
ZFIN|ZDB-GENE-030131-5809 517 pmpca "peptidase (mitochondria 0.803 0.371 0.518 8e-53
FB|FBgn0033235 CG8728 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 118/191 (61%), Positives = 144/191 (75%)

Query:    49 LPKVHYSCVKDNDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHF 108
             LP+  Y+        T+VTTLPNGLR+ASE R+G FCT+G++IDSG RYE  YPSGVSHF
Sbjct:    79 LPEAVYAAPLAESAITKVTTLPNGLRIASEPRYGQFCTVGLVIDSGPRYEVAYPSGVSHF 138

Query:   109 LEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVV 168
             LEKLAFNST  + NKDAI + LEK GGICDC SSRDT IYAAS  +  +D+V ++L DV 
Sbjct:   139 LEKLAFNSTVNFPNKDAILKELEKNGGICDCQSSRDTLIYAASIDSRAIDSVTRLLADVT 198

Query:   169 LRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIG 228
             LRP  S +E+++AR+ + FELE   MRPEQE +LMDMIHAAA++DNTLGLPKLCP  ++ 
Sbjct:   199 LRPTLSDQEVSLARRAVNFELETLGMRPEQEPILMDMIHAAAFRDNTLGLPKLCPLENLD 258

Query:   229 VINNNTLFTYL 239
              IN N L  YL
Sbjct:   259 HINRNVLMNYL 269
GO:0004222 "metalloendopeptidase activity" evidence=ISS
GO:0016485 "protein processing" evidence=ISS
GO:0005759 "mitochondrial matrix" evidence=ISS
GO:0006508 "proteolysis" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
UNIPROTKB|Q0P5M8 PMPCA "Mitochondrial-processing peptidase subunit alpha" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q10713 PMPCA "Mitochondrial-processing peptidase subunit alpha" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|727897 Pmpca "peptidase (mitochondrial processing) alpha" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1M964 Pmpca "Mitochondrial-processing peptidase subunit alpha" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q68FX8 Pmpca "Peptidase (Mitochondrial processing) alpha, isoform CRA_a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1918568 Pmpca "peptidase (mitochondrial processing) alpha" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJ49 PMPCA "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PF09 PMPCA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5809 pmpca "peptidase (mitochondrial processing) alpha" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0P5M8MPPA_BOVIN3, ., 4, ., 2, 4, ., 6, 40.560.83260.3790yesN/A
Q5R513MPPA_PONAB3, ., 4, ., 2, 4, ., 6, 40.52460.89120.4057yesN/A
Q9DC61MPPA_MOUSE3, ., 4, ., 2, 4, ., 6, 40.560.83260.3797yesN/A
Q10713MPPA_HUMAN3, ., 4, ., 2, 4, ., 6, 40.51560.89120.4057yesN/A
P20069MPPA_RAT3, ., 4, ., 2, 4, ., 6, 40.5650.83260.3797yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
pfam00675149 pfam00675, Peptidase_M16, Insulinase (Peptidase fa 1e-42
COG0612 438 COG0612, PqqL, Predicted Zn-dependent peptidases [ 1e-32
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16) Back     alignment and domain information 
 Score =  141 bits (358), Expect = 1e-42
 Identities = 53/151 (35%), Positives = 80/151 (52%), Gaps = 4/151 (2%)

Query: 74  RVASE-NRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEK 132
           RVASE +       +G+ ID+GSRYE    +G++HFLE +AF  T +Y   + + + LEK
Sbjct: 1   RVASEHDPPADTSAVGLWIDAGSRYEPDDNNGLAHFLEHMAFKGTKKY-PSEDLEEELEK 59

Query: 133 IGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENY 192
           +GG  +  +SR+  +Y        L   +  L D  L P FS  E+   R  + +E+E  
Sbjct: 60  LGGSLNAYTSREHTVYYVEVLNDDLPKAVDRLADFFLNPLFSPSEVERERLVVLYEVEAV 119

Query: 193 QMRPEQETLLMDMIHAAAYKDNTLGLPKLCP 223
              P+   +L+D +HAAAY+   LG   L P
Sbjct: 120 DAEPQA--VLLDNLHAAAYRGTPLGRSLLGP 148

Length = 149
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 239
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 99.97
KOG0960|consensus 467 99.96
COG0612 438 PqqL Predicted Zn-dependent peptidases [General fu 99.96
PRK15101 961 protease3; Provisional 99.95
KOG2067|consensus 472 99.94
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 99.93
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.87
KOG0959|consensus 974 99.86
KOG2583|consensus 429 99.79
PTZ00432 1119 falcilysin; Provisional 99.78
PRK15101 961 protease3; Provisional 99.36
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 99.29
KOG2019|consensus 998 98.88
KOG0961|consensus 1022 98.88
PF08367248 M16C_assoc: Peptidase M16C associated; InterPro: I 98.12
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 97.25
PTZ00432 1119 falcilysin; Provisional 97.14
KOG2019|consensus 998 97.08
KOG0959|consensus 974 96.32
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 96.09
PF03410 590 Peptidase_M44: Protein G1; InterPro: IPR005072 In 95.19
KOG2067|consensus472 94.89
PHA03081 595 putative metalloprotease; Provisional 94.36
KOG0960|consensus467 92.37
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 89.15
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information 
Probab=99.97  E-value=9.9e-29  Score=229.27  Aligned_cols=172  Identities=22%  Similarity=0.280  Sum_probs=162.3

Q ss_pred             EEEcCCCCEEEEeeCC-CCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCeeeeeeccc
Q psy8067          66 VTTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRD  144 (239)
Q Consensus        66 ~~~L~NG~~v~~~~~~-~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~~g~~~~~~~~~~  144 (239)
                      .++|+||++|++.+.+ .+.+.+.+++++|+.+|+.+..|++|+++||+|+||.+++...++.+.++..|+++|++++.|
T Consensus         2 ~~tL~NGLrVllv~~p~~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~d   81 (696)
T TIGR02110         2 RITLPNGLRVHLYHQPDAKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLER   81 (696)
T ss_pred             eEEcCCCCEEEEEECCCCCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcCC
Confidence            4789999999998866 589999999999999999999999999999999999999433479999999999999999999


Q ss_pred             eeEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcCCCCCCCCCCCCh
Q psy8067         145 TFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPP  224 (239)
Q Consensus       145 ~~~~~~~~~~~~le~~l~ll~~~~~~P~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~p~~~~~~g~~  224 (239)
                      ++.|.+++++++++.+|+++.+++++|.|++++++++|+.++++++...++|  .....+.+.+.+|++|||+++.+|+.
T Consensus        82 ~T~y~~~v~~~~l~~aL~lLaD~l~~P~f~eeeierEr~vvl~Ei~~~~ddp--~~~~~~~l~~~l~~~HPy~~~~iGt~  159 (696)
T TIGR02110        82 TTAFFFELPAAALAAGLARLCDMLARPLLTAEDQQREREVLEAEYIAWQNDA--DTLREAALLDALQAGHPLRRFHAGSR  159 (696)
T ss_pred             eEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            9999999999999999999999999999999999999999999999998888  88899999999999999999999999


Q ss_pred             hhhcCCC---HHHHhccC
Q psy8067         225 ASIGVIN---NNTLFTYL  239 (239)
Q Consensus       225 ~~l~~i~---~e~l~~~y  239 (239)
                      ++|+.++   .+++++||
T Consensus       160 esL~~it~~t~edL~~F~  177 (696)
T TIGR02110       160 DSLALPNTAFQQALRDFH  177 (696)
T ss_pred             HHHhCcccchHHHHHHHH
Confidence            9999876   99999987

In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
>KOG0960|consensus Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>KOG2067|consensus Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959|consensus Back     alignment and domain information
>KOG2583|consensus Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>KOG2019|consensus Back     alignment and domain information
>KOG0961|consensus Back     alignment and domain information
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>KOG2019|consensus Back     alignment and domain information
>KOG0959|consensus Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2067|consensus Back     alignment and domain information
>PHA03081 putative metalloprotease; Provisional Back     alignment and domain information
>KOG0960|consensus Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
1hr6_A 475 Yeast Mitochondrial Processing Peptidase Length = 4 1e-28
1bcc_A 446 Cytochrome Bc1 Complex From Chicken Length = 446 1e-17
1bgy_A 446 Cytochrome Bc1 Complex From Bovine Length = 446 2e-17
1qcr_A 446 Crystal Structure Of Bovine Mitochondrial Cytochrom 2e-17
1sqb_A 480 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 2e-17
3cwb_A 446 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 2e-16
3cwb_B 441 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 2e-16
1hr6_B 443 Yeast Mitochondrial Processing Peptidase Length = 4 5e-16
1bcc_B 422 Cytochrome Bc1 Complex From Chicken Length = 422 1e-15
3bcc_B 422 Stigmatellin And Antimycin Bound Cytochrome Bc1 Com 1e-15
1hr7_B 443 Yeast Mitochondrial Processing Peptidase Beta-E73q 1e-15
1sqb_B 453 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 2e-15
1qcr_B 423 Crystal Structure Of Bovine Mitochondrial Cytochrom 3e-15
1bgy_B 439 Cytochrome Bc1 Complex From Bovine Length = 439 3e-15
3hdi_A 421 Crystal Structure Of Bacillus Halodurans Metallo Pe 4e-15
3eoq_A 406 The Crystal Structure Of Putative Zinc Protease Bet 2e-07
1ezv_A 430 Structure Of The Yeast Cytochrome Bc1 Complex Co- C 7e-06
1kb9_A 431 Yeast Cytochrome Bc1 Complex Length = 431 4e-05
3amj_C 437 The Crystal Structure Of The Heterodimer Of M16b Pe 5e-05
3ami_A 445 The Crystal Structure Of The M16b Metallopeptidase 5e-05
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase Length = 475 Back     alignment and structure 
Iteration: 1

 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 107/176 (60%), Gaps = 3/176 (1%)
Query: 63  NTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVN 122
           N ++++L NGL+VA+ N  G F  +G+ ID+GSR+E     G +H L++LAF ST E+V 
Sbjct: 5   NFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKST-EHVE 63
Query: 123 KDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMAR 182
             A+A++LE +GG   C SSR+  +Y AS     +  +++++ + V  PK +++E+   +
Sbjct: 64  GRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQK 123
Query: 183 QTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTY 238
            + ++E++   M+P  E +L +++H AAY   TLG P +CP   I  I+   L  Y
Sbjct: 124 LSAEYEIDEVWMKP--ELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDY 177
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken Length = 446 Back     alignment and structure
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine Length = 446 Back     alignment and structure
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 446 Back     alignment and structure
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 480 Back     alignment and structure
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 446 Back     alignment and structure
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 441 Back     alignment and structure
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase Length = 443 Back     alignment and structure
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Length = 443 Back     alignment and structure
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 453 Back     alignment and structure
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 423 Back     alignment and structure
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine Length = 439 Back     alignment and structure
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase Length = 421 Back     alignment and structure
>pdb|3EOQ|A Chain A, The Crystal Structure Of Putative Zinc Protease Beta- Subunit From Thermus Thermophilus Hb8 Length = 406 Back     alignment and structure
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 430 Back     alignment and structure
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex Length = 431 Back     alignment and structure
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase From Sphingomonas Sp. A1 Length = 437 Back     alignment and structure
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit From Sphingomonas Sp. A1 Length = 445 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
1hr6_A 475 Alpha-MPP, mitochondrial processing peptidase alph 1e-69
1pp9_A 446 Ubiquinol-cytochrome C reductase complex core Pro 1e-69
1pp9_B 439 Ubiquinol-cytochrome C reductase complex core Pro 4e-67
1hr6_B 443 Beta-MPP, mitochondrial processing peptidase beta 2e-62
3cx5_A 431 Cytochrome B-C1 complex subunit 1, mitochondrial; 3e-62
3hdi_A 421 Processing protease; CAGE structure, M16B peptidas 4e-47
3cx5_B 352 Cytochrome B-C1 complex subunit 2, mitochondrial; 5e-40
3eoq_A 406 Putative zinc protease; two similar domains of bet 7e-31
3amj_B 424 Zinc peptidase inactive subunit; alpha/beta, zinc 8e-24
3gwb_A 434 Peptidase M16 inactive domain family protein; pept 3e-21
3d3y_A 425 Uncharacterized protein; APC29635, conserved prote 3e-19
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 4e-16
3go9_A 492 Insulinase family protease; IDP00573, structural g 2e-15
3ami_A 445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 2e-12
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 2e-12
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 2e-06
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 8e-06
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Length = 475 Back     alignment and structure
 Score =  220 bits (562), Expect = 1e-69
 Identities = 61/177 (34%), Positives = 104/177 (58%), Gaps = 3/177 (1%)

Query: 63  NTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVN 122
           N ++++L NGL+VA+ N  G F  +G+ ID+GSR+E     G +H L++LAF ST     
Sbjct: 5   NFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHV-E 63

Query: 123 KDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMAR 182
             A+A++LE +GG   C SSR+  +Y AS     +  +++++ + V  PK +++E+   +
Sbjct: 64  GRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQK 123

Query: 183 QTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYL 239
            + ++E++   M+PE   +L +++H AAY   TLG P +CP   I  I+   L  Y 
Sbjct: 124 LSAEYEIDEVWMKPEL--VLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYR 178
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Length = 446 Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Length = 439 Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Length = 443 Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Length = 431 Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Length = 421 Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Length = 352 Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Length = 406 Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Length = 424 Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Length = 434 Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Length = 425 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Length = 492 Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Length = 445 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 995 Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Length = 1193 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query239
3ami_A 445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 99.97
3eoq_A 406 Putative zinc protease; two similar domains of bet 99.97
3hdi_A 421 Processing protease; CAGE structure, M16B peptidas 99.96
1hr6_B 443 Beta-MPP, mitochondrial processing peptidase beta 99.96
1hr6_A 475 Alpha-MPP, mitochondrial processing peptidase alph 99.96
1pp9_A 446 Ubiquinol-cytochrome C reductase complex core Pro 99.96
3gwb_A 434 Peptidase M16 inactive domain family protein; pept 99.95
1pp9_B 439 Ubiquinol-cytochrome C reductase complex core Pro 99.95
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 99.95
3amj_B 424 Zinc peptidase inactive subunit; alpha/beta, zinc 99.94
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 99.93
3cx5_B 352 Cytochrome B-C1 complex subunit 2, mitochondrial; 99.92
3cx5_A 431 Cytochrome B-C1 complex subunit 1, mitochondrial; 99.91
3d3y_A 425 Uncharacterized protein; APC29635, conserved prote 99.91
3go9_A 492 Insulinase family protease; IDP00573, structural g 99.89
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 99.87
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 99.86
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 99.53
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 99.47
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 99.38
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 98.49
3ih6_A197 Putative zinc protease; bordetella pertussis toham 97.7
3eoq_A406 Putative zinc protease; two similar domains of bet 97.04
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 96.92
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 96.86
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 96.81
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 96.66
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 96.6
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 96.53
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 96.51
3gwb_A434 Peptidase M16 inactive domain family protein; pept 96.27
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 96.14
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 95.61
3go9_A492 Insulinase family protease; IDP00573, structural g 86.48
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
Probab=99.97  E-value=8.3e-30  Score=226.84  Aligned_cols=176  Identities=23%  Similarity=0.284  Sum_probs=166.3

Q ss_pred             CCCcEEEEcCCCCEEEEeeCC-CCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCeeee
Q psy8067          61 DRNTQVTTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDC  139 (239)
Q Consensus        61 ~~~~~~~~L~NG~~v~~~~~~-~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~~g~~~~~  139 (239)
                      .++++.++|+||++|++++.+ .+.+.+.+++++|+..|+.+..|++|+++||+++|++++ +..++.+.++++|+++++
T Consensus         4 ~~~~~~~~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~-~~~~l~~~l~~~g~~~na   82 (445)
T 3ami_A            4 AASTFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDV-GPGEFSKRVAAMGGRDNA   82 (445)
T ss_dssp             GGGEEEEECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSS-CTTHHHHHHHHTTCEEEE
T ss_pred             CcCcEEEECCCCCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCC-CHHHHHHHHHHhCCcccc
Confidence            457889999999999998765 589999999999999999999999999999999999999 568999999999999999


Q ss_pred             eeccceeEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHH-HHhcCCchHHHHHHHHHHHhcCCCCCCC
Q psy8067         140 LSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELE-NYQMRPEQETLLMDMIHAAAYKDNTLGL  218 (239)
Q Consensus       140 ~~~~~~~~~~~~~~~~~le~~l~ll~~~~~~P~f~~~~~~~~k~~~~~~l~-~~~~~p~~~~~~~~~l~~~~~~~~p~~~  218 (239)
                      +++.+++.|.+++++++++.+|+++++++++|.|++++|+++++.+.++++ ...++|  ...+.+.+.+.+|++|||++
T Consensus        83 ~t~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p--~~~~~~~~~~~~~~~~p~~~  160 (445)
T 3ami_A           83 FTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKP--RSKAYEALMAASYVAHPYRV  160 (445)
T ss_dssp             EECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCH--HHHHHHHHHHHHCSSSGGGS
T ss_pred             ccCCCeEEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCCh--HHHHHHHHHHHhccCCCCCC
Confidence            999999999999999999999999999999999999999999999999998 567777  88999999999999999999


Q ss_pred             CCCCChhhhcCCCHHHHhccC
Q psy8067         219 PKLCPPASIGVINNNTLFTYL  239 (239)
Q Consensus       219 ~~~g~~~~l~~i~~e~l~~~y  239 (239)
                      +..|+.++|++++.+++++||
T Consensus       161 ~~~G~~e~l~~it~~~l~~f~  181 (445)
T 3ami_A          161 PVIGWMNDIQNMTAQDVRDWY  181 (445)
T ss_dssp             CTTCCHHHHHHCCHHHHHHHH
T ss_pred             CCCCCHHHHhhCCHHHHHHHH
Confidence            999999999999999999986
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 239
d1ppjb1219 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 6e-20
d1ppja1232 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 7e-17
d3cx5a1213 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 8e-17
d1hr6a1220 d.185.1.1 (A:14-233) Mitochondrial processing pept 4e-16
d3cx5b1202 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 1e-15
d1hr6b1222 d.185.1.1 (B:24-245) Mitochondrial processing pept 5e-13
d1q2la4240 d.185.1.1 (A:24-263) Protease III {Escherichia col 2e-12
d2fgea4257 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 7e-11
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 219 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.7 bits (203), Expect = 6e-20
 Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 4/178 (2%)

Query: 61  DRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEY 120
            ++ + T LPNGL +AS   +     IG+ I +GSRYE     G SH L   +  +T   
Sbjct: 5   PQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGA 64

Query: 121 VNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINM 180
            +   I + +E +GG     S+R+   Y        +D +M+ L +V   P+F + E+  
Sbjct: 65  SSFK-ITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAA 123

Query: 181 ARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTY 238
            +  ++ +       P+     +     AA   N L     CP   IG +    L  Y
Sbjct: 124 LQPQLRIDKAVALQNPQAH---VIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDY 178
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 232 Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 220 Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 202 Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Length = 240 Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 257 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query239
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 100.0
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 100.0
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.98
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 99.97
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 99.96
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.95
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.89
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 99.85
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 99.61
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 98.52
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 97.84
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 97.37
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 97.31
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 96.9
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 96.49
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 95.49
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 95.25
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Mitochondrial processing peptidase (MPP) alpha chain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-31  Score=216.35  Aligned_cols=175  Identities=35%  Similarity=0.663  Sum_probs=168.4

Q ss_pred             CCcEEEEcCCCCEEEEeeCCCCeEEEEEEEecCCCCCCCCCCcHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCeeeeee
Q psy8067          62 RNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLS  141 (239)
Q Consensus        62 ~~~~~~~L~NG~~v~~~~~~~~~~~i~~~~~~Gs~~e~~~~~g~a~l~~~~~~~G~~~~~s~~~l~~~l~~~g~~~~~~~  141 (239)
                      ..+++.+|+||++|++.+.+.+.+.+++++++|+.+|+.+..|++|+++||++.|++++ +..++.+.++..|+++++++
T Consensus         4 ~~~~~~~L~NGl~v~~~~~~~~~~~v~l~~~~G~~~e~~~~~G~a~ll~~ll~~gt~~~-~~~~~~~~~~~~g~~~~~~~   82 (220)
T d1hr6a1           4 DNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHV-EGRAMAETLELLGGNYQCTS   82 (220)
T ss_dssp             TCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTB-CHHHHHHHHHHTTSCEEEEE
T ss_pred             CCceEEEcCCCCEEEEEeCCCCEEEEEEEEcccccccCCCCchHHHHHHHHHhcccccc-chHHHHHHHHHhcchhhhcc
Confidence            35799999999999988888889999999999999999999999999999999999998 88999999999999999999


Q ss_pred             ccceeEEEEEecCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcCCCCCCCCCC
Q psy8067         142 SRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKL  221 (239)
Q Consensus       142 ~~~~~~~~~~~~~~~le~~l~ll~~~~~~P~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~p~~~~~~  221 (239)
                      +.+++.|.+++.+++++.+|+++++++.+|.|++++++++|..+..+++...++|  ...+.+.+++.+|++|||+++..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~~~~~~~~~ek~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~~~~  160 (220)
T d1hr6a1          83 SRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKP--ELVLPELLHTAAYSGETLGSPLI  160 (220)
T ss_dssp             CSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHTTTSGGGSCSS
T ss_pred             cccceeeeccccccccchhhhhhhHhhhcccchhhhhhhhcchhhhhhhhhhccc--hhhhhhhhccccccccCCccccc
Confidence            9999999999999999999999999999999999999999999999999999988  89999999999999999999988


Q ss_pred             CChhhhcCCCHHHHhccC
Q psy8067         222 CPPASIGVINNNTLFTYL  239 (239)
Q Consensus       222 g~~~~l~~i~~e~l~~~y  239 (239)
                      |+.++|++++.+++++||
T Consensus       161 g~~~~i~~it~~dl~~f~  178 (220)
T d1hr6a1         161 CPRGLIPSISKYYLLDYR  178 (220)
T ss_dssp             CCGGGGGGCCHHHHHHHH
T ss_pred             ccHHHHhhCCHHHHHHHH
Confidence            999999999999999986
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure