Psyllid ID: psy8076
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 737 | 2.2.26 [Sep-21-2011] | |||||||
| Q14DH7 | 682 | Acyl-CoA synthetase short | yes | N/A | 0.842 | 0.910 | 0.442 | 1e-176 | |
| Q9H6R3 | 686 | Acyl-CoA synthetase short | yes | N/A | 0.830 | 0.892 | 0.437 | 1e-174 | |
| Q5REB8 | 686 | Acyl-CoA synthetase short | yes | N/A | 0.830 | 0.892 | 0.437 | 1e-174 | |
| A7MB45 | 686 | Acyl-CoA synthetase short | yes | N/A | 0.839 | 0.902 | 0.441 | 1e-172 | |
| P28812 | 628 | Uncharacterized protein P | yes | N/A | 0.807 | 0.947 | 0.395 | 1e-141 | |
| Q554Z5 | 688 | Acyl-CoA synthetase short | yes | N/A | 0.789 | 0.845 | 0.368 | 1e-122 | |
| O93730 | 670 | Acetyl-coenzyme A synthet | yes | N/A | 0.833 | 0.916 | 0.325 | 1e-104 | |
| P55912 | 628 | Propionate--CoA ligase OS | yes | N/A | 0.729 | 0.856 | 0.352 | 1e-103 | |
| Q5SIW6 | 648 | Acetyl-coenzyme A synthet | yes | N/A | 0.799 | 0.908 | 0.331 | 1e-100 | |
| Q72J95 | 648 | Acetyl-coenzyme A synthet | yes | N/A | 0.799 | 0.908 | 0.331 | 1e-100 |
| >sp|Q14DH7|ACSS3_MOUSE Acyl-CoA synthetase short-chain family member 3, mitochondrial OS=Mus musculus GN=Acss3 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 617 bits (1592), Expect = e-176, Method: Compositional matrix adjust.
Identities = 317/717 (44%), Positives = 417/717 (58%), Gaps = 96/717 (13%)
Query: 12 FSGNKINECTSNQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWF 71
F G T+ +Y + S+ PE FW +W K W + L++ P T WF
Sbjct: 41 FGGRGCRALTTGSGGEYKTHFAASVADPERFWGKAAEQISWYKPWTKTLESRYPPSTSWF 100
Query: 72 VGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGV 131
V G +N CYNAIDRH+E G K+A+I+DSPVT + ++Y E+ EQVS LAG L GV
Sbjct: 101 VEGMLNICYNAIDRHIENGQGDKIAIIYDSPVTDTKATISYKEVLEQVSKLAGVLVKQGV 160
Query: 132 SAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCG 191
GD V+IYMP+IP+AI +MLA R+GAIHS++FGGFA++EL R++HAKPKV++ AS G
Sbjct: 161 KKGDTVVIYMPMIPQAIYTMLACARIGAIHSLIFGGFASKELSTRIDHAKPKVVVTASFG 220
Query: 192 VEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRC 251
+EP + V Y +L EAL I +PD +I+ R +E+ L G D+ W++ +A+ SH C
Sbjct: 221 IEPGRKVEYIPLLEEALRIGQHRPDRVLIYSRPNMEKVPLMSGRDLDWEEEMAKAQSHDC 280
Query: 252 VPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQD 311
VPV + PLYILYTSGTTG PKG++RP GG+ L WTMS IY +
Sbjct: 281 VPVLSEHPLYILYTSGTTG------------LPKGVVRPTGGYAVMLNWTMSSIYGLKPG 328
Query: 312 DVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTA 371
+VWW ASD+GWVVGHSYICYGPL G T+V+YEGKP TPD Y+RV+ H V LFTA
Sbjct: 329 EVWWAASDLGWVVGHSYICYGPLLHGNTTVLYEGKPVGTPDAGAYFRVLAEHGVAALFTA 388
Query: 372 PTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTET 431
PTA+R IR++D + LG QYS + LFVAGE CD ET W++K F V +L+HWWQTET
Sbjct: 389 PTAIRAIRQQDPGAALGKQYSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTET 448
Query: 432 GHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNV 491
G ITA C+G + PP G PGY+ V IL ++++K
Sbjct: 449 GSPITASCIGLGNSKTPPPGQAGKCVPGYN------------------VMILDDNMQK-- 488
Query: 492 PKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTK 551
+ LG IVVKLPLPPG S L+K + F +YF K
Sbjct: 489 -----------------------LKARSLGNIVVKLPLPPGAFSGLWKNQEAFKHLYFEK 525
Query: 552 FPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVP 611
FPGYYDTMDAGY DE GY+YV +R DDVINVAGHR+S A+E+ VLSH V D AV+G
Sbjct: 526 FPGYYDTMDAGYMDEEGYLYVMSRVDDVINVAGHRISAGAIEESVLSHGTVADCAVVGKE 585
Query: 612 EPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCT 671
+P KG +P L + K+
Sbjct: 586 DPLKGHVPLALCVLKK-----------------------------------------DVN 604
Query: 672 RSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKPLRV 728
S+E++ +E+ + VR++IGP+AAF+ + V LP+TRSGK R ++ + KP +V
Sbjct: 605 ASEEQVLEEIVKHVRQSIGPVAAFRNAVFVKQLPKTRSGKIPRSTLSALVNGKPYKV 661
|
Activates acetate so that it can be used for lipid synthesis or for energy generation. Mus musculus (taxid: 10090) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 1 |
| >sp|Q9H6R3|ACSS3_HUMAN Acyl-CoA synthetase short-chain family member 3, mitochondrial OS=Homo sapiens GN=ACSS3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 611 bits (1575), Expect = e-174, Method: Compositional matrix adjust.
Identities = 310/708 (43%), Positives = 416/708 (58%), Gaps = 96/708 (13%)
Query: 21 TSNQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACY 80
+S +Y + S+ PE FW +W K W + L+N P T+WFV G +N CY
Sbjct: 55 SSGSGSEYKTHFAASVTDPERFWGKAAEQISWYKPWTKTLENKHSPSTRWFVEGMLNICY 114
Query: 81 NAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIY 140
NA+DRH+E G K+A+I+DSPVT + TY E+ EQVS LAG L G+ GD V+IY
Sbjct: 115 NAVDRHIENGKGDKIAIIYDSPVTNTKATFTYKEVLEQVSKLAGVLVKHGIKKGDTVVIY 174
Query: 141 MPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRY 200
MP+IP+A+ +MLA R+GAIHS++FGGFA++EL +R++H KPKV++ AS G+EP + V Y
Sbjct: 175 MPMIPQAMYTMLACARIGAIHSLIFGGFASKELSSRIDHVKPKVVVTASFGIEPGRRVEY 234
Query: 201 KTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPL 260
++ EAL+I KPD +I+ R +E L PG D+ WD+ +A+ SH CVPV + PL
Sbjct: 235 VPLVEEALKIGQHKPDKILIYNRPNMEAVPLAPGRDLDWDEEMAKAQSHDCVPVLSEHPL 294
Query: 261 YILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDM 320
YILYTSGTTG PKG++RP GG+ L W+MS IY + +VWW ASD+
Sbjct: 295 YILYTSGTTG------------LPKGVIRPTGGYAVMLHWSMSSIYGLQPGEVWWAASDL 342
Query: 321 GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRR 380
GWVVGHSYICYGPL G T+V+YEGKP TPD Y+RV+ H V LFTAPTA+R IR+
Sbjct: 343 GWVVGHSYICYGPLLHGNTTVLYEGKPVGTPDAGAYFRVLAEHGVAALFTAPTAIRAIRQ 402
Query: 381 EDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCL 440
+D + LG QYS + LFVAGE CD ET W++ F V +L+HWWQTETG ITA C+
Sbjct: 403 QDPGAALGKQYSLTRFKTLFVAGERCDVETLEWSKNVFRVPVLDHWWQTETGSPITASCV 462
Query: 441 GYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHF 500
G + PP G PGY+ V IL ++++K
Sbjct: 463 GLGNSKTPPPGQAGKSVPGYN------------------VMILDDNMQK----------- 493
Query: 501 TSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMD 560
++ R LG IVVKLPLPPG S L+K + F +YF KFPGYYDTMD
Sbjct: 494 --LKARC------------LGNIVVKLPLPPGAFSGLWKNQEAFKHLYFEKFPGYYDTMD 539
Query: 561 AGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPF 620
AGY DE GY+YV +R DDVINVAGHR+S A+E+ +LSH V D AV+G +P KG +P
Sbjct: 540 AGYMDEEGYLYVMSRVDDVINVAGHRISAGAIEESILSHGTVADCAVVGKEDPLKGHVPL 599
Query: 621 CLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKE 680
L + ++ ++E++ +E
Sbjct: 600 ALCVLRKD-----------------------------------------INATEEQVLEE 618
Query: 681 LKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKPLRV 728
+ + VR+ IGP+AAF+ + V LP+TRSGK R ++ + KP ++
Sbjct: 619 IVKHVRQNIGPVAAFRNAVFVKQLPKTRSGKIPRSALSAIVNGKPYKI 666
|
Activates acetate so that it can be used for lipid synthesis or for energy generation. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q5REB8|ACSS3_PONAB Acyl-CoA synthetase short-chain family member 3, mitochondrial OS=Pongo abelii GN=ACSS3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 611 bits (1575), Expect = e-174, Method: Compositional matrix adjust.
Identities = 310/708 (43%), Positives = 415/708 (58%), Gaps = 96/708 (13%)
Query: 21 TSNQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACY 80
+S +Y + S+ PE FW +W K W + L+N P T WFV G +N CY
Sbjct: 55 SSGSGSEYKTHFAASVTDPERFWGKAAEQISWYKPWTKTLENKHSPSTSWFVEGMLNVCY 114
Query: 81 NAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIY 140
NA+DRH+E G K+A+I+DSPVT + TY E+ EQVS LAG L G+ GD V+IY
Sbjct: 115 NAVDRHIENGKGDKIAIIYDSPVTNTKATFTYKEVLEQVSKLAGVLVKHGIKKGDTVVIY 174
Query: 141 MPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRY 200
MP+IP+A+ +MLA R+GAIHS++FGGFA++EL +R++H KPKV++ AS G+EP + V Y
Sbjct: 175 MPMIPQAMYTMLACARIGAIHSLIFGGFASKELSSRIDHVKPKVVVTASFGIEPGRRVEY 234
Query: 201 KTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPL 260
++ EAL+I KPD +I+ R +E L PG D+ WD+ +A+ SH CVPV + PL
Sbjct: 235 VPLVEEALKIGQHKPDKILIYNRPNMEAVPLAPGRDLDWDEEMAKAQSHDCVPVLSEHPL 294
Query: 261 YILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDM 320
YILYTSGTTG PKG++RP GG+ L W+MS IY + +VWW ASD+
Sbjct: 295 YILYTSGTTG------------LPKGVIRPTGGYAVMLNWSMSSIYGLQPGEVWWAASDL 342
Query: 321 GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRR 380
GWVVGHSYICYGPL G T+V+YEGKP TPD Y+RV+ H V LFTAPTA+R IR+
Sbjct: 343 GWVVGHSYICYGPLLHGNTTVLYEGKPVGTPDAGAYFRVLAEHGVAALFTAPTAIRAIRQ 402
Query: 381 EDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCL 440
+D + LG QYS + LFVAGE CD ET W++ F V +L+HWWQTETG ITA C+
Sbjct: 403 QDPGAALGKQYSLTRFKTLFVAGERCDVETLEWSKNVFRVPVLDHWWQTETGSPITASCV 462
Query: 441 GYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHF 500
G + PP G PGY+ V IL ++++K
Sbjct: 463 GLGNSKTPPPGQAGKSVPGYN------------------VMILDDNMQK----------- 493
Query: 501 TSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMD 560
++ R LG IVVKLPLPPG S L+K + F +YF KFPGYYDTMD
Sbjct: 494 --LKARC------------LGNIVVKLPLPPGAFSGLWKNQEAFKHLYFEKFPGYYDTMD 539
Query: 561 AGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPF 620
AGY DE GY+YV +R DDVINVAGHR+S A+E+ +LSH V D AV+G +P KG +P
Sbjct: 540 AGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESILSHGTVADCAVVGKEDPLKGHVPL 599
Query: 621 CLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKE 680
L + ++ ++E++ +E
Sbjct: 600 ALCVLRKD-----------------------------------------INATEEQVLEE 618
Query: 681 LKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKPLRV 728
+ + VR+ IGP+AAF+ + V LP+TRSGK R ++ + KP ++
Sbjct: 619 IVKHVRQNIGPVAAFRNAVFVKQLPKTRSGKIPRSALSAIVNGKPYKI 666
|
Activates acetate so that it can be used for lipid synthesis or for energy generation. Pongo abelii (taxid: 9601) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A7MB45|ACSS3_BOVIN Acyl-CoA synthetase short-chain family member 3, mitochondrial OS=Bos taurus GN=ACSS3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 606 bits (1563), Expect = e-172, Method: Compositional matrix adjust.
Identities = 316/715 (44%), Positives = 414/715 (57%), Gaps = 96/715 (13%)
Query: 14 GNKINECTSNQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVG 73
G + S+ +Y + S+ PE FW +W K W + L+N P T WFV
Sbjct: 47 GGRGCRALSSGGGEYKTHFAASVTDPERFWGKAAEQISWYKPWTKTLENRHSPSTSWFVE 106
Query: 74 GEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSA 133
G +N CYNAIDRH+E G K+A+I+DSPVT + +TY E+ EQVS LAG L GV
Sbjct: 107 GMLNICYNAIDRHIENGKGDKIAIIYDSPVTNTKATITYKEVLEQVSKLAGVLVKHGVKK 166
Query: 134 GDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVE 193
GD V+IYMP+IP+A+ +MLA R+GAIHS++FGGFA++EL R++HAKPK++I AS G+E
Sbjct: 167 GDTVVIYMPMIPQAMYAMLACARIGAIHSLIFGGFASKELSTRIDHAKPKLVITASFGIE 226
Query: 194 PNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVP 253
P + V Y ++ EAL I KPD +I+ R + L PGY + WD+ L++ SH CVP
Sbjct: 227 PGRKVEYVPLVEEALRIGQHKPDKVLIYNRPHTDMVPLAPGYYLDWDEELSKAQSHDCVP 286
Query: 254 VEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDV 313
V + PLYILYTSGTTG PKG++RP GG+ L W+MS IY + +V
Sbjct: 287 VLSEHPLYILYTSGTTG------------LPKGVVRPTGGYAVMLNWSMSSIYGLKPGEV 334
Query: 314 WWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPT 373
WW ASD+GWVVGHSYICYGPL G T+V+YEGKP TPD Y+RV+ H V LFTAPT
Sbjct: 335 WWAASDLGWVVGHSYICYGPLLHGNTTVLYEGKPVGTPDAGAYFRVLAEHGVAALFTAPT 394
Query: 374 ALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGH 433
A+R IR++D + LG QYS + LFVAGE CD ET W++K F V +L+HWWQTETG
Sbjct: 395 AIRAIRQQDPGAALGKQYSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGS 454
Query: 434 SITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPK 493
ITA C+G + PP G PGY+ V IL ++++K
Sbjct: 455 PITASCIGLGNSKTPPPGQAGKSVPGYN------------------VMILDDNMQK---- 492
Query: 494 GQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFP 553
++ R LG IVVKLPLPPG S L+K + F +YF KFP
Sbjct: 493 ---------LKARC------------LGNIVVKLPLPPGAFSGLWKNQEAFKHLYFEKFP 531
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
GYYDTMDAGY DE GY+YV +R DDVINVAGHR+S ALE+ +LS V D AV+G +
Sbjct: 532 GYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGALEESILSLGIVADCAVVGKEDS 591
Query: 614 TKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRS 673
KG IP L + K+ +
Sbjct: 592 LKGHIPLALCVLKKD-----------------------------------------INTT 610
Query: 674 DEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKPLRV 728
+E + +E+ + VR+ IGP+AAF+ + V LP+TRSGK R ++ + KP +V
Sbjct: 611 EEHVLEEIVKHVRQTIGPVAAFRKAVFVKQLPKTRSGKIPRSTLSALVNGKPYKV 665
|
Activates acetate so that it can be used for lipid synthesis or for energy generation. Bos taurus (taxid: 9913) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|P28812|Y3568_PSEAE Uncharacterized protein PA3568 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA3568 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 502 bits (1293), Expect = e-141, Method: Compositional matrix adjust.
Identities = 275/695 (39%), Positives = 382/695 (54%), Gaps = 100/695 (14%)
Query: 28 YYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDRHV 87
Y + +SI P +FW + W + IL++ +WF G +N+ Y A+DR +
Sbjct: 3 YLQQHARSIAEPAAFWAEQARSLAWYQAPANILESLPDGTHRWFADGRLNSAYLALDRQI 62
Query: 88 ERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEA 147
E G ++ ALI+DSPVT + + +Y L+++V+ LAG+L A+GV GDRV+IYMP++P+A
Sbjct: 63 EEGRGEQTALIYDSPVTGTQDRYSYLRLRDEVARLAGALRALGVGKGDRVIIYMPMVPQA 122
Query: 148 IVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEA 207
++MLA RLGA+HSVVFGGFA EL R++ A PK+++ ASCG+E ++V+ YK ++++A
Sbjct: 123 AMAMLACARLGAVHSVVFGGFAPYELALRIDDATPKLVLTASCGLEFDRVIEYKPLVDKA 182
Query: 208 LEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSG 267
LE++ +P + +++QR A L PG D+ W D LA +PV + DPLYI+YTSG
Sbjct: 183 LELAIHQPAHVMVWQRPQAP-ARLHPGRDLDWQDCLAAAEPADPLPVASGDPLYIMYTSG 241
Query: 268 TTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHS 327
TTGKP KGI+R GGH + + + IY M DVWW SD+GWVVGHS
Sbjct: 242 TTGKP------------KGIVRDNGGHAVAVRYAVRTIYGMQAGDVWWGISDVGWVVGHS 289
Query: 328 YICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTL 387
I YGPL G T+V YEGKP RTPD Y+RVI H+VN LF APTA+R IR+ED
Sbjct: 290 LIVYGPLMCGCTTVFYEGKPVRTPDAGAYWRVIEEHRVNSLFCAPTAIRAIRKEDPHGER 349
Query: 388 GAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQ-HDT 446
+Y SLR+LF+AGE D T++W E+ + +HWWQTETG +TA C+G HD
Sbjct: 350 VKRYDLGSLRHLFLAGEKLDSSTQHWLEEHTGRPVHDHWWQTETGWPVTAPCIGIAGHDL 409
Query: 447 VPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVR 506
ST PGY V+
Sbjct: 410 --RAGSTNRAVPGY-------------------------------------------HVQ 424
Query: 507 IIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDE 566
++ ++G + G IV+ LPLPPG TL+ R+++ Y +PGYY T D GY DE
Sbjct: 425 VLDDEGRPLGANRQGAIVIALPLPPGCAQTLWGDHPRYLQAYLGNYPGYYHTGDGGYLDE 484
Query: 567 NGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKK 626
+G++Y+ R DDVINV+GHRLST +E+ V H V + AVIGV + KG +P L + K
Sbjct: 485 DGFVYIMGRTDDVINVSGHRLSTGEMEERVAQHQAVAECAVIGVRDELKGHVPLGLVVLK 544
Query: 627 RIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVR 686
D G + E++ +EL LVR
Sbjct: 545 ----DDAGIAA-------------------------------------EQLQRELVALVR 563
Query: 687 EAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMA 721
E IG +A F+ V LP+TRSGK R + +A
Sbjct: 564 EQIGALACFQRVVVVKRLPKTRSGKILRAVLRKIA 598
|
Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964) |
| >sp|Q554Z5|ACSB_DICDI Acyl-CoA synthetase short-chain family member B, mitochondrial OS=Dictyostelium discoideum GN=aslB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 440 bits (1131), Expect = e-122, Method: Compositional matrix adjust.
Identities = 257/698 (36%), Positives = 387/698 (55%), Gaps = 116/698 (16%)
Query: 35 SIEAPESFWTDVGN-MATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDRHVERGMAK 93
+++ P FW +V + W+K+++++ + D+ +WF GG +NACYNA+D H + + K
Sbjct: 59 ALKEPIQFWDEVASKYVHWNKRYEKVY-SGDEYNPEWFKGGVLNACYNALDVHAKDPITK 117
Query: 94 -KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSML 152
++A+IH++P + K+TY EL ++V + A L +GV GDRV+IYMP+I +A+++ML
Sbjct: 118 NRIAIIHETPSKNNTNKLTYGELWDEVCIFARGLHNLGVEKGDRVVIYMPMINQALIAML 177
Query: 153 ATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISS 212
A RLGA HSVVFGGFA+ +L R+EH KPKV+I+A+ GVE +K+ Y +L++ALE+SS
Sbjct: 178 ACARLGATHSVVFGGFASPQLAQRIEHFKPKVVISANFGVEGHKINCYTPLLSKALELSS 237
Query: 213 CKPDYCIIFQRRCV--EEAELTPGY---DILWDDALAQRLSHR-CVPVEANDPLYILYTS 266
KP++ I++ R V + E+ P + W + + +R V++ PLYILYTS
Sbjct: 238 HKPNHTIVYNRLDVKLDAGEVLPPRVEGSLDWSELIKNIAPYRDYALVDSTHPLYILYTS 297
Query: 267 GTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGH 326
GTTG PKG++R GG+ L +++ Y M D ++ SD+GWVVGH
Sbjct: 298 GTTG------------MPKGVVRDTGGYSVALNYSIRNCYGMKSGDTFFAGSDVGWVVGH 345
Query: 327 SYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDST 386
+ YGPL G+TS+++EGKP PD S Y+++I H+VN LF+APTA+R I R+D D
Sbjct: 346 TLSVYGPLMVGLTSIIFEGKP-TVPDASTYWKLIEKHRVNALFSAPTAIRAIHRDDADGK 404
Query: 387 LGAQYSTDSLRYLFVAGEHCDHETKNWAEK-SFNVTMLNHWWQTETGHSITAH--CLGYQ 443
L ++ SLR +++ GE D T N+ + N +L+++W TE+G + + C
Sbjct: 405 LASKCDLSSLRSIWLGGERLDSSTFNFLRNITNNKPILDNYWNTESGSPLITNPSC---- 460
Query: 444 HDTVPPKY-STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTS 502
VP K +TG P PGY + H + E L +
Sbjct: 461 --QVPIKANATGKPMPGY---------------QFHVLSPTSERLGAD------------ 491
Query: 503 VEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAG 562
++G + +KLP+ PG +TLY P+ + Y ++PGY T D+G
Sbjct: 492 ----------------KIGEVCIKLPVAPGFTNTLYLNPEGYKNAYLNEYPGYLRTADSG 535
Query: 563 YYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCL 622
YYDENGY ++ +R DD+INV+GHRLST ++E++++ HP + + AVIGV + KGEIPF L
Sbjct: 536 YYDENGYYHIISRVDDIINVSGHRLSTGSIEEILVKHPKIVECAVIGVHDELKGEIPFGL 595
Query: 623 YIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELK 682
V++KP EE+ EL
Sbjct: 596 ----------------------------------VVLKP-------QYKDCAEEVENELI 614
Query: 683 ELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDM 720
+ VRE IGP+A FK SV LP+TRSGK R + M
Sbjct: 615 KEVRENIGPVATFKKVLSVNRLPKTRSGKILRNILRKM 652
|
Activates acetate so that it can be used for lipid synthesis or for energy generation. Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|O93730|ACSA_PYRAE Acetyl-coenzyme A synthetase OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=acsA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust.
Identities = 239/735 (32%), Positives = 362/735 (49%), Gaps = 121/735 (16%)
Query: 9 SLDFSGNKINECTSNQN---DKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQ 65
L F IN+ ++ D Y+ +R+++E ESFW V W K WD++LD S+
Sbjct: 11 ELPFDEQIINDKWRSKYTPIDAYFKFHRQTVENLESFWESVAKELEWFKPWDKVLDASNP 70
Query: 66 PFTKWFVGGEINACYNAIDRHVERGMAKKVAL------IHDSPVTKSIRKVTYAELQEQV 119
PF KWFVGG +N Y A+DRHV+ K+A+ + ++ RK+TY +L +V
Sbjct: 71 PFYKWFVGGRLNLSYLAVDRHVKTWRKNKLAIEWEGEPVDENGYPTDRRKLTYYDLYREV 130
Query: 120 SLLAGSLAA-IGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLE 178
+ +A L GV GD++ +Y+P++PE ++MLA R+GAI SVVF GF+A L R+
Sbjct: 131 NRVAYMLKQNFGVKKGDKITLYLPMVPELPITMLAAWRIGAITSVVFSGFSADALAERIN 190
Query: 179 HAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL 238
++ +++I A +VVR K +++ ALE + + I+ R +++ +T G D
Sbjct: 191 DSQSRIVITADGFWRRGRVVRLKEVVDAALE-KATGVESVIVLPRLGLKDVPMTEGRDYW 249
Query: 239 WDDALAQRLSHRCV---PVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHI 295
W+ + + + PVE+ P +ILYTSGTTGK PKGI+ GG
Sbjct: 250 WNKLMQGIPPNAYIEPEPVESEHPSFILYTSGTTGK------------PKGIVHDTGGWA 297
Query: 296 ATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQ 355
+ TM ++++ DD++W +D+GWV GHSY+ GPL G T V+YEG PD P P +
Sbjct: 298 VHVYATMKWVFDIRDDDIFWCTADIGWVTGHSYVVLGPLLMGATEVIYEGAPD-YPQPDR 356
Query: 356 YYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAE 415
++ +I + V +T+PTA+R+ R ++ ST LR + GE + E WA
Sbjct: 357 WWSIIERYGVTIFYTSPTAIRMFMRYGEEWPRKHDLST--LRIIHSVGEPINPEAWRWAY 414
Query: 416 KSF---NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYST-GLPFPGYDGKYVNIVMLN 471
+ V + WW TETG + +H G VP K T G P PG+
Sbjct: 415 RVLGNEKVAFGSTWWMTETGGIVISHAPGLY--LVPMKPGTNGPPLPGF----------- 461
Query: 472 WLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPP 531
EV ++ +G+ P G +V+K P P
Sbjct: 462 --------------------------------EVDVVDENGNPAPPGVKGYLVIKKPW-P 488
Query: 532 GTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSA 591
G + ++ P+R++K Y+++FPG + D D++GYI+V R D+VI VAGHRL T
Sbjct: 489 GMLHGIWGDPERYIKTYWSRFPGMFYAGDYAIKDKDGYIWVLGRADEVIKVAGHRLGTYE 548
Query: 592 LEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLL 651
LE ++SHP V ++AV+GVP+ KGE+P + K+
Sbjct: 549 LESALISHPAVAESAVVGVPDAIKGEVPIAFVVLKQ------------------------ 584
Query: 652 TNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGK 711
+E+ KEL+E VR IGPIA VT LP+TRSGK
Sbjct: 585 ------------------GVAPSDELRKELREHVRRTIGPIAEPAQIFFVTKLPKTRSGK 626
Query: 712 TARKSIVDMARNKPL 726
R+ + +A PL
Sbjct: 627 IMRRLLKAVATGAPL 641
|
Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) (taxid: 178306) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|P55912|PRPE_SALTY Propionate--CoA ligase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=prpE PE=3 SV=2 | Back alignment and function description |
|---|
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 213/605 (35%), Positives = 337/605 (55%), Gaps = 67/605 (11%)
Query: 28 YYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDRHV 87
+ + Y++SI PE+FW + W + + + LD+S PF +WF GG N C+NA+DR
Sbjct: 3 FSEFYQRSINEPEAFWAEQARRIDWRQPFTQTLDHSRPPFARWFCGGTTNLCHNAVDRWR 62
Query: 88 ERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEA 147
++ + +ALI S T R T+++L ++V+++A L ++GV GDRVL+YMP+I EA
Sbjct: 63 DK-QPEALALIAVSSETDEERTFTFSQLHDEVNIVAAMLLSLGVQRGDRVLVYMPMIAEA 121
Query: 148 IVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEA 207
+++LA R+GAIHSVVFGGFA+ + AR++ A+P +I++A G K++ YK +L++A
Sbjct: 122 QITLLACARIGAIHSVVFGGFASHSVAARIDDARPALIVSADAGARGGKILPYKKLLDDA 181
Query: 208 LEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPV---EANDPLYILY 264
+ + +P + ++ R + A + G D+ + Q L VPV E+N+ ILY
Sbjct: 182 IAQAQHQPKHVLLVDRGLAKMAWVD-GRDLDFATLRQQHLGA-SVPVAWLESNETSCILY 239
Query: 265 TSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVV 324
TSGTTGK PKG+ R VGG+ LA +M I+ V++ ASD+GWVV
Sbjct: 240 TSGTTGK------------PKGVQRDVGGYAVALATSMDTIFGGKAGGVFFCASDIGWVV 287
Query: 325 GHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKD 384
GHSYI Y PL AG+ +++YEG P PD +++++ ++VN +F+APTA+RV+++
Sbjct: 288 GHSYIVYAPLLAGMATIVYEGLP-TYPDCGVWWKIVEKYQVNRMFSAPTAIRVLKKFPTA 346
Query: 385 STLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQH 444
+ SL L++AGE D T +W ++ V +++++WQTE+G I A L
Sbjct: 347 QI--RNHDLSSLEALYLAGEPLDEPTASWVTETLGVPVIDNYWQTESGWPIMA--LARAL 402
Query: 445 DTVPPKY-STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSV 503
D P + S G+P GY+ + +N V
Sbjct: 403 DDRPSRLGSPGVPMYGYNVQLLNEVT---------------------------------- 428
Query: 504 EVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFP-GYYDTMDAG 562
G C +E G +V++ PLPPG + T++ RF+K Y++ F Y T D G
Sbjct: 429 --------GEPCGINEKGMLVIEGPLPPGCIQTIWGDDARFVKTYWSLFNRQVYATFDWG 480
Query: 563 YYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCL 622
D GY ++ R DDVIN+AGHRL T +E+ + S+P+V + AV+G+ + KG++
Sbjct: 481 IRDAEGYYFILGRTDDVINIAGHRLGTREIEESISSYPNVAEVAVVGIKDALKGQVAVAF 540
Query: 623 YIKKR 627
I K+
Sbjct: 541 VIPKQ 545
|
Catalyzes the synthesis of propionyl-CoA from propionate and CoA. Also converts acetate to acetyl-CoA but with a lower specific activity. Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 7 |
| >sp|Q5SIW6|ACSA_THET8 Acetyl-coenzyme A synthetase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 234/706 (33%), Positives = 351/706 (49%), Gaps = 117/706 (16%)
Query: 23 NQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNA 82
++Y Y +S+ PE FW V + W + W ++L+ D P KWFVGG+ N YNA
Sbjct: 27 KSEEEYQRLYEESVRDPEGFWGRVASELHWFEPWRKVLEG-DLPHPKWFVGGKTNLSYNA 85
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
+DRHV+ K A++ + + R +TY +L +V A L +GV GDRV IY+P
Sbjct: 86 LDRHVKTWRRNKAAIVWEGEPGEE-RVLTYHDLWREVQRFANVLKRLGVKKGDRVTIYLP 144
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202
+IPEA ++MLA R+GA+HSVVFGGF+A L R++ A+ KV+I A G +V K
Sbjct: 145 MIPEAAIAMLACTRIGAVHSVVFGGFSAGALADRIKDAEAKVLITADGGFRRGGIVPLKQ 204
Query: 203 ILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRC--VPVEANDPL 260
+EAL+ ++ ++ RR EE TPG D W + L + RC P+EA +PL
Sbjct: 205 NADEALKDATSVEHVVVV--RRTGEEVPWTPGRDHWWHE-LMEAAPDRCDPEPMEAEEPL 261
Query: 261 YILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDM 320
+ILYTSG+TGK PKG+L GG++ + +T +++++ +DV+W +D+
Sbjct: 262 FILYTSGSTGK------------PKGVLHTTGGYMTYVYYTTKLVFDLKDEDVYWCTADV 309
Query: 321 GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRR 380
GW+ GHSY+ YGPL G T+VMYEG P+ P+P +++R++ + V +TAPTA+R +
Sbjct: 310 GWITGHSYVVYGPLLNGATTVMYEGAPN-WPEPDRFWRIVDKYGVTVFYTAPTAIRSFMK 368
Query: 381 EDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFN---VTMLNHWWQTETGHSITA 437
+ ++ DSLR L GE + E W +++ WWQTETG
Sbjct: 369 WGEGWP--GKHRLDSLRLLGTVGEPINPEAWLWYYHVIGKGRCPIVDTWWQTETG----- 421
Query: 438 HCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNA 497
G T+P ++ PG+ GK V+ LDG
Sbjct: 422 ---GIMITTLPGAHAMK---PGHAGKPFFGVVPEILDG---------------------- 453
Query: 498 THFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYD 557
E R + N P E G + + P P + T++ P+RF++ YF++ PG Y
Sbjct: 454 ------EHRPVEN------PDEGGHLCITRPW-PSMLRTVWGDPERFLQQYFSQHPGVYF 500
Query: 558 TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
+ D D++GY + R DDV+NVAGHRL T +E +++HP V + AV+G P+P KGE
Sbjct: 501 SGDGAKRDKDGYYMILGRVDDVLNVAGHRLGTMEIESALVAHPAVAEAAVVGRPDPVKGE 560
Query: 618 --IPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDE 675
+ F + P D +
Sbjct: 561 AIVAFVTLKEGHTPSDAL------------------------------------------ 578
Query: 676 EIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMA 721
+EL+ V + IGPIA LP+TRSGK R+ + +A
Sbjct: 579 --KEELRAHVAKVIGPIARPDEIRFTDALPKTRSGKIMRRLLRQIA 622
|
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (taxid: 300852) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q72J95|ACSA_THET2 Acetyl-coenzyme A synthetase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 234/706 (33%), Positives = 351/706 (49%), Gaps = 117/706 (16%)
Query: 23 NQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNA 82
++Y Y +S+ PE FW V + W + W ++L+ D P KWFVGG+ N YNA
Sbjct: 27 KSEEEYQRLYEESVRDPEGFWGRVASELHWFEPWRKVLEG-DLPHPKWFVGGKTNLSYNA 85
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
+DRHV+ K A++ + + R +TY +L +V A L +GV GDRV IY+P
Sbjct: 86 LDRHVKTWRRNKAAIVWEGEPGEE-RVLTYHDLWREVQRFANVLKRLGVKKGDRVTIYLP 144
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202
+IPEA ++MLA R+GA+HSVVFGGF+A L R++ A+ KV+I A G +V K
Sbjct: 145 MIPEAAIAMLACTRIGAVHSVVFGGFSAGALADRIKDAEAKVLITADGGFRRGGIVPLKQ 204
Query: 203 ILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVP--VEANDPL 260
+EAL+ ++ ++ RR EE TPG D W + L + RC P +EA +PL
Sbjct: 205 NADEALKDATSVEHVVVV--RRTGEEVPWTPGRDHWWHE-LMEAAPDRCDPESMEAEEPL 261
Query: 261 YILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDM 320
+ILYTSG+TGK PKG+L GG++ + +T +++++ +DV+W +D+
Sbjct: 262 FILYTSGSTGK------------PKGVLHTTGGYMTYVYYTTKLVFDLKDEDVYWCTADV 309
Query: 321 GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRR 380
GW+ GHSY+ YGPL G T+VMYEG P+ P+P +++R++ + V +TAPTA+R +
Sbjct: 310 GWITGHSYVVYGPLLNGATTVMYEGAPN-WPEPDRFWRIVDKYGVTVFYTAPTAIRSFMK 368
Query: 381 EDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFN---VTMLNHWWQTETGHSITA 437
+ ++ DSLR L GE + E W +++ WWQTETG
Sbjct: 369 WGEGWP--GKHRLDSLRLLGTVGEPINPEAWLWYYHVIGKGRCPIVDTWWQTETG----- 421
Query: 438 HCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNA 497
G T+P ++ PG+ GK V+ LDG
Sbjct: 422 ---GIMITTLPGAHAMK---PGHAGKPFFGVVPEILDG---------------------- 453
Query: 498 THFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYD 557
E R + N P E G + + P P + T++ P+RF++ YF++ PG Y
Sbjct: 454 ------EHRPVEN------PDEGGHLCITRPW-PSMLRTVWGDPERFLQQYFSQHPGVYF 500
Query: 558 TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
+ D D++GY + R DDV+NVAGHRL T +E +++HP V + AV+G P+P KGE
Sbjct: 501 SGDGAKRDKDGYYMILGRVDDVLNVAGHRLGTMEIESALVAHPAVAEAAVVGRPDPVKGE 560
Query: 618 --IPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDE 675
+ F + P D +
Sbjct: 561 AIVAFVTLKEGHTPSDAL------------------------------------------ 578
Query: 676 EIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMA 721
+EL+ V + IGPIA LP+TRSGK R+ + +A
Sbjct: 579 --KEELRAHVAKVIGPIARPDEIRFTDALPKTRSGKIMRRLLRQIA 622
|
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (taxid: 262724) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 737 | ||||||
| 91093581 | 674 | PREDICTED: similar to AGAP001473-PA [Tri | 0.854 | 0.934 | 0.599 | 0.0 | |
| 193603647 | 658 | PREDICTED: acyl-CoA synthetase short-cha | 0.822 | 0.920 | 0.621 | 0.0 | |
| 242014113 | 647 | luciferase, putative [Pediculus humanus | 0.824 | 0.939 | 0.613 | 0.0 | |
| 156553526 | 684 | PREDICTED: acyl-CoA synthetase short-cha | 0.854 | 0.921 | 0.567 | 0.0 | |
| 322801295 | 679 | hypothetical protein SINV_10166 [Solenop | 0.833 | 0.904 | 0.547 | 0.0 | |
| 328786986 | 674 | PREDICTED: acyl-CoA synthetase short-cha | 0.833 | 0.910 | 0.548 | 0.0 | |
| 157115668 | 658 | acetyl-coa synthetase [Aedes aegypti] gi | 0.823 | 0.922 | 0.546 | 0.0 | |
| 380016036 | 667 | PREDICTED: LOW QUALITY PROTEIN: acyl-CoA | 0.819 | 0.905 | 0.547 | 0.0 | |
| 350414928 | 675 | PREDICTED: acyl-CoA synthetase short-cha | 0.819 | 0.894 | 0.551 | 0.0 | |
| 195151843 | 675 | GL21853 [Drosophila persimilis] gi|19411 | 0.815 | 0.890 | 0.543 | 0.0 |
| >gi|91093581|ref|XP_969296.1| PREDICTED: similar to AGAP001473-PA [Tribolium castaneum] gi|270015571|gb|EFA12019.1| hypothetical protein TcasGA2_TC001434 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2299), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/726 (59%), Positives = 519/726 (71%), Gaps = 96/726 (13%)
Query: 3 QFKCDISLDFSGNKINECTSNQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDN 62
K D + S N I + + KY +AY+KSI PE FW +VG + TW+K WD+++D+
Sbjct: 15 NIKYDRHVYDSENVIEKENPYYSKKYEEAYKKSITNPEEFWPEVGKLVTWTKPWDKVMDH 74
Query: 63 SDQPFTKWFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLL 122
S PFTKWF GGE+NACYNA+DRHVE G KVALIHDSP+TK++RK+TYAEL +QVS L
Sbjct: 75 SHPPFTKWFAGGELNACYNAVDRHVEAGRGSKVALIHDSPLTKTVRKITYAELLDQVSHL 134
Query: 123 AGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKP 182
AG+LA +GVS GDRVLIYMPLIPEA+++MLAT RLG +HSVVFGGFAARELCAR+ HA+P
Sbjct: 135 AGALAKLGVSKGDRVLIYMPLIPEAVIAMLATARLGGVHSVVFGGFAARELCARIVHAEP 194
Query: 183 KVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDA 242
KVIIAASCG+EP+K+VRYK ILN+A+E SS KP+ CIIFQRR VE A + DILW+DA
Sbjct: 195 KVIIAASCGIEPHKIVRYKDILNDAIEWSSHKPNKCIIFQRRNVECAPIDVEMDILWEDA 254
Query: 243 LAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTM 302
L H C+PVEANDPLYILYTSGTT DQPKGI RPVGGHIATL W+M
Sbjct: 255 LKMAGPHECIPVEANDPLYILYTSGTT------------DQPKGIQRPVGGHIATLTWSM 302
Query: 303 SVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHN 362
SVIY MG +DVWW ASD+GWVVGHSYICY PL GITSVMYEGKPDRTPDP QY+R+I+
Sbjct: 303 SVIYGMGPNDVWWAASDLGWVVGHSYICYAPLLYGITSVMYEGKPDRTPDPGQYFRIINE 362
Query: 363 HKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTM 422
HKVN +FT PTA RVI RED D G +YS SLR +FVAGEHCD+ETK WAEK+FNV +
Sbjct: 363 HKVNAIFTVPTAFRVIHREDPDIEFGRKYSIRSLRTIFVAGEHCDYETKMWAEKTFNVPV 422
Query: 423 LNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRI 482
LNHWWQTETGH+ITA CLGY H+ PPKY+ G+PFPGYD
Sbjct: 423 LNHWWQTETGHAITATCLGYGHNLSPPKYTAGMPFPGYD--------------------- 461
Query: 483 LPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQ 542
++I+R+DG E +ELGRIV+KLPLPPGTMSTLY+AP+
Sbjct: 462 ----------------------IKILRSDGMEASNNELGRIVIKLPLPPGTMSTLYQAPE 499
Query: 543 RFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDV 602
RF ++YF+++PGYYDTMDAGY DE GYIYVTARDDDVINVAGHR+STSALEDVVL+HPD+
Sbjct: 500 RFCQVYFSRYPGYYDTMDAGYKDEYGYIYVTARDDDVINVAGHRISTSALEDVVLAHPDI 559
Query: 603 GDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPY 662
D V+GVPE TKGE+P CLY+ KR
Sbjct: 560 ADATVVGVPEHTKGEVPLCLYVIKR----------------------------------- 584
Query: 663 GPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMAR 722
+S+ I ++L +VRE +GPIAAF+++ +V GLPRTRSGKT RKSI D+AR
Sbjct: 585 ------NAKKSEVAISRDLLRMVRELVGPIAAFRMAVAVRGLPRTRSGKTCRKSISDLAR 638
Query: 723 NKPLRV 728
NK +R+
Sbjct: 639 NKEVRI 644
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193603647|ref|XP_001946759.1| PREDICTED: acyl-CoA synthetase short-chain family member 3, mitochondrial-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2284), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/702 (62%), Positives = 501/702 (71%), Gaps = 96/702 (13%)
Query: 23 NQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNA 82
N+ + Y +AYR+S+E PE FW +VG + W K WD++LDNS QP T WFVGGEINACYNA
Sbjct: 16 NKTENYEEAYRRSLEDPEGFWAEVGAVVDWYKPWDKVLDNSAQPLTDWFVGGEINACYNA 75
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
+DRH++ G KKVALIHDSPVT+S+ K+TY +L E+VSLLAG+L +GV GDR+LIYMP
Sbjct: 76 VDRHIKAGKGKKVALIHDSPVTESVTKITYDDLYEKVSLLAGALVNLGVVKGDRILIYMP 135
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202
LIPEAI+SMLA VR+GA+HSVVFGGFAARELCAR+ HA PKVIIAA+CG+EPNK+VRYK
Sbjct: 136 LIPEAIISMLAVVRIGAVHSVVFGGFAARELCARINHATPKVIIAANCGIEPNKIVRYKD 195
Query: 203 ILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYI 262
ILN AL+ + KP +CII+QR +E + LTPG DILW DAL+ H CVPVEAN PLYI
Sbjct: 196 ILNTALDRVTEKPKHCIIYQRPNMEPSPLTPGIDILWSDALSTAKHHPCVPVEANHPLYI 255
Query: 263 LYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGW 322
LYTSGTT D+PKGI+RP GGHIATL WTMS IY M +DDVWWTASDMGW
Sbjct: 256 LYTSGTT------------DKPKGIVRPTGGHIATLCWTMSCIYGMTEDDVWWTASDMGW 303
Query: 323 VVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRED 382
VVGHSYICYGPL AGITSVMYEGKPDRTPDP QY+RVI +HKVNGLFTAPTALRVIRRED
Sbjct: 304 VVGHSYICYGPLCAGITSVMYEGKPDRTPDPGQYFRVIQDHKVNGLFTAPTALRVIRRED 363
Query: 383 KDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGY 442
G++Y+T SLR LFVAGEHCDHET WA K NV +LNHWWQTETGHSITA CLG+
Sbjct: 364 PVLEFGSKYNTKSLRTLFVAGEHCDHETLAWAGKVLNVPVLNHWWQTETGHSITATCLGF 423
Query: 443 QHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTS 502
H+ PP +S G+PFPGYD
Sbjct: 424 GHNLKPPMFSAGMPFPGYD----------------------------------------- 442
Query: 503 VEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAG 562
VRI++ DGS C+ ELGRIVVKLPLPPG MS LYKAP+RF+ YF F GYYDTMDAG
Sbjct: 443 --VRILKEDGSPCQLLELGRIVVKLPLPPGVMSCLYKAPERFLNTYFNNFIGYYDTMDAG 500
Query: 563 YYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCL 622
Y DE GYIYVTARDDDVINVAGHRLSTSALEDV+LSHPDVGD AV GVPE TKGEIP CL
Sbjct: 501 YTDEKGYIYVTARDDDVINVAGHRLSTSALEDVILSHPDVGDAAVFGVPETTKGEIPLCL 560
Query: 623 YIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELK 682
YIK + C++ +E+I E+
Sbjct: 561 YIKNK-----------------------------------------NCSKKEEDINNEIV 579
Query: 683 ELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNK 724
+ VR+ IGPIA+F L V GLPRTRSGKTARKS+ ++A K
Sbjct: 580 QNVRDLIGPIASFHLCAPVQGLPRTRSGKTARKSLSNLASGK 621
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242014113|ref|XP_002427742.1| luciferase, putative [Pediculus humanus corporis] gi|212512183|gb|EEB15004.1| luciferase, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 872 bits (2254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/704 (61%), Positives = 502/704 (71%), Gaps = 96/704 (13%)
Query: 25 NDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAID 84
++KY AY KSI PE FW +VG TW W +++DNS+QPFTKWFVGG++NACYNAID
Sbjct: 10 SEKYQKAYSKSINEPEEFWAEVGKSVTWYTPWSKVIDNSNQPFTKWFVGGKLNACYNAID 69
Query: 85 RHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLI 144
RHVE G +KVALIHDSPVT +IR VTY EL +VS LAG+L+A+GV GDRVLIYMPLI
Sbjct: 70 RHVESGKGEKVALIHDSPVTNTIRHVTYNELYSKVSRLAGALSALGVEKGDRVLIYMPLI 129
Query: 145 PEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTIL 204
PE I++MLATVRLGA+HSVVFGGFAARELC R+EH++PKVIIAASCGVEP+K+VRYK IL
Sbjct: 130 PETIMAMLATVRLGAVHSVVFGGFAARELCVRIEHSEPKVIIAASCGVEPHKIVRYKEIL 189
Query: 205 NEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILY 264
NEAL S KP CII+QRR VEE L P D+LWDDAL H CVPVEANDPLYILY
Sbjct: 190 NEALLHSKVKPRCCIIYQRRNVEECYLEPEIDLLWDDALEMTEPHPCVPVEANDPLYILY 249
Query: 265 TSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVV 324
TSGTT DQPKGILRP GGHIATLAWTMS IY MG +DVW +ASD+GWVV
Sbjct: 250 TSGTT------------DQPKGILRPTGGHIATLAWTMSTIYGMGPNDVWLSASDLGWVV 297
Query: 325 GHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKD 384
GHSYICYGPL GITSVMYEGKPDRTPDP Y+RVI NH+VN + TAPTALRVIRRED++
Sbjct: 298 GHSYICYGPLVYGITSVMYEGKPDRTPDPGAYFRVIQNHQVNAILTAPTALRVIRREDQE 357
Query: 385 STLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQH 444
+ +YST SLR++F+AGEH D ETK WA K F V +LNHWWQTETGHSITA C+G+ H
Sbjct: 358 AVYSRKYSTKSLRHIFIAGEHSDDETKMWAAKVFKVPILNHWWQTETGHSITATCIGFNH 417
Query: 445 DTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVE 504
PP++S GLPFPGYD
Sbjct: 418 SVDPPRFSAGLPFPGYD------------------------------------------- 434
Query: 505 VRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYY 564
VRI+R DG+E + ELGRIVVKLPLPPGTMSTLYKA RF++ YFTK+PGYYDTMDAGY
Sbjct: 435 VRILRKDGTEADFLELGRIVVKLPLPPGTMSTLYKADDRFIETYFTKYPGYYDTMDAGYV 494
Query: 565 DENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYI 624
DE GY+YVTARDDDVINVAGHRLST+ALE+V++SH V D AVIGVPEPTKGEIPFC +
Sbjct: 495 DEFGYVYVTARDDDVINVAGHRLSTAALENVIMSHSSVSDAAVIGVPEPTKGEIPFCFFT 554
Query: 625 KKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKEL 684
K+ T S E+I ++L ++
Sbjct: 555 LKK-----------------------------------------GVTESPEKITEDLVDM 573
Query: 685 VREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKPLRV 728
VR+ IGPIAAFKL+ + LPRTRSGK ARKS+ ++ARNK +++
Sbjct: 574 VRDLIGPIAAFKLAAPIRALPRTRSGKIARKSMANLARNKFVKI 617
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156553526|ref|XP_001601268.1| PREDICTED: acyl-CoA synthetase short-chain family member 3, mitochondrial-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/731 (56%), Positives = 499/731 (68%), Gaps = 101/731 (13%)
Query: 2 DQFKCDISLDFSGNKINECTSNQNDK----YYDAYRKSIEAPESFWTDVGNMATWSKKWD 57
D FK I ++ NQN Y +A+RKSIE PE FW ++G WS+ WD
Sbjct: 21 DSFKAKIVRQKLRTDGSDYILNQNRYRSTIYEEAFRKSIENPEEFWAEIGQCIEWSRPWD 80
Query: 58 RILDNSDQPFTKWFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQE 117
R+LDNS++PFTKW+VGGE NACYNA+DRHV G+ K ALIHDSP+T+++R+V+YAEL +
Sbjct: 81 RVLDNSNEPFTKWYVGGETNACYNAVDRHVAAGLGSKTALIHDSPMTETVRRVSYAELLD 140
Query: 118 QVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARL 177
+ S LAG+LA +GVS GDRVLIYMPLIPE IV++LAT RLGA+HSVVFGGFAA+EL R+
Sbjct: 141 RTSRLAGALAELGVSRGDRVLIYMPLIPETIVAILATARLGAVHSVVFGGFAAKELATRI 200
Query: 178 EHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237
+HA+PKVI+AASCG+EP KVV+Y +LN+A+ + S +C+++QRR + EA L +
Sbjct: 201 DHAEPKVIVAASCGLEPGKVVKYTDMLNDAMNLISVAAPHCVVYQRRHIWEAPLLES-QL 259
Query: 238 LWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIAT 297
WDD L H CVPVEAN PLYILYTSGTT D+PKGI RP+GGHIAT
Sbjct: 260 DWDDLLEHAEPHPCVPVEANQPLYILYTSGTT------------DKPKGIQRPIGGHIAT 307
Query: 298 LAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYY 357
L WTM+ IY M ++ VWW ASD+GWVVG SYICYGPL G TSVMYEGKPDRTPD QY+
Sbjct: 308 LCWTMNAIYGMDKNSVWWVASDLGWVVGLSYICYGPLLYGATSVMYEGKPDRTPDAGQYF 367
Query: 358 RVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKS 417
R+I HKVN LFT PTA RV+RR D ++ LG +YST SLR +FVAGEHCD+E K WAEK
Sbjct: 368 RIIDEHKVNALFTVPTAFRVLRRADPETHLGRKYSTKSLRTIFVAGEHCDYEAKAWAEKV 427
Query: 418 FNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRA 477
F V +LNHWWQTETGH+ITA CLG H T PPKYSTG+PFPGY
Sbjct: 428 FKVPILNHWWQTETGHAITATCLGLGHTTSPPKYSTGMPFPGY----------------- 470
Query: 478 HCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTL 537
V ++R DGS+ EPHELGRI V+LPLPPGTMSTL
Sbjct: 471 --------------------------YVEVLREDGSKAEPHELGRIAVRLPLPPGTMSTL 504
Query: 538 YKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVL 597
Y AP RF +IYF+K+PGYYDTMDAGY DE GY++VTARDDDVINVAGHRLSTSALEDVVL
Sbjct: 505 YHAPGRFKEIYFSKYPGYYDTMDAGYIDEYGYVFVTARDDDVINVAGHRLSTSALEDVVL 564
Query: 598 SHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRV 657
HP+V D AV+GVPE TKGEIP CLY+ +
Sbjct: 565 GHPEVVDAAVVGVPEHTKGEIPLCLYVMRD------------------------------ 594
Query: 658 LIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSI 717
+ +S++EI EL VRE IGPIAAFK++ SV LPRTRSGKT RKSI
Sbjct: 595 -----------HSRKSEQEINTELIARVRELIGPIAAFKVAASVKALPRTRSGKTCRKSI 643
Query: 718 VDMARNKPLRV 728
D+AR+K +++
Sbjct: 644 ADLARSKHVQI 654
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322801295|gb|EFZ21982.1| hypothetical protein SINV_10166 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/716 (54%), Positives = 486/716 (67%), Gaps = 102/716 (14%)
Query: 18 NECTSNQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEIN 77
NEC++ Y DAY+KS+E PE FW +VG+ WSK W ++LDNS++PFTKWFVGGE+N
Sbjct: 6 NECST-----YEDAYKKSLEHPEEFWGEVGHCIDWSKPWHKVLDNSNEPFTKWFVGGELN 60
Query: 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRV 137
ACYNA+DRHV G +K ALIHDSP T IRKVTY EL E+ S+L+G+LA +GV GDRV
Sbjct: 61 ACYNAVDRHVHAGYGEKTALIHDSPQTSLIRKVTYNELLEKTSVLSGALADLGVRKGDRV 120
Query: 138 LIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKV 197
+IYMPLIPE I+++LAT RLGAIHSVVFGGFAA EL +R++HA PKV+IAASCG+EP+KV
Sbjct: 121 IIYMPLIPETIIAILATARLGAIHSVVFGGFAANELASRIDHATPKVVIAASCGLEPSKV 180
Query: 198 VRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEAN 257
++Y T+LN A+++ CI+FQRR V E+ L WDD + + H CV VEAN
Sbjct: 181 IKYTTMLNGAMDMIIAPKPKCIVFQRRNVWESPLLES-QFNWDDLMKRSKPHPCVMVEAN 239
Query: 258 DPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317
DPLYILYTSGTTG QPKGI+RPVGGH+ATL WTM +Y M ++ VWW A
Sbjct: 240 DPLYILYTSGTTG------------QPKGIIRPVGGHLATLCWTMKSVYGMNKNSVWWVA 287
Query: 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRV 377
SDMGWVVGHSYICYGPL G TSVMYEGKPDRTPD SQY+R+I H VN LF PTALRV
Sbjct: 288 SDMGWVVGHSYICYGPLLYGATSVMYEGKPDRTPDASQYFRIIEQHSVNALFCVPTALRV 347
Query: 378 IRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITA 437
I+R D + LG +YS SL+ +FVAGE CD+ETK WAEK+F V +LN+WWQ+ETGH ITA
Sbjct: 348 IKRADPEILLGKKYSLKSLKTIFVAGEFCDYETKAWAEKAFKVPILNNWWQSETGHPITA 407
Query: 438 HCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNA 497
CLGY H PK+STG P PGYD
Sbjct: 408 LCLGYGHSANLPKFSTGFPVPGYD------------------------------------ 431
Query: 498 THFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYD 557
+ I+R+DGS+ HELGRI +KLPLPPG MSTLY+A +RF ++YF+ FPGYYD
Sbjct: 432 -------IHILRDDGSQASQHELGRIAIKLPLPPGCMSTLYQASERFKQVYFSTFPGYYD 484
Query: 558 TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
TMDAGY DE GY+YVTARDDD+INVAGHR+ST+ALED++L+HPDV D AVIGVP+ TKGE
Sbjct: 485 TMDAGYIDEFGYVYVTARDDDIINVAGHRISTAALEDIILAHPDVVDAAVIGVPDYTKGE 544
Query: 618 IPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEI 677
+P CLY+++ + ++EEI
Sbjct: 545 VPLCLYVRREDAIS-----------------------------------------NEEEI 563
Query: 678 GKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKPLRVRLVYL 733
+ L VR +GPIA+F+ + ++T LP+TRSGK RKSI +AR+K ++ + V L
Sbjct: 564 NQALVARVRNMLGPIASFRAAAAITALPKTRSGKIIRKSIALLARSKQIKHQYVTL 619
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328786986|ref|XP_397379.4| PREDICTED: acyl-CoA synthetase short-chain family member 3, mitochondrial-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/713 (54%), Positives = 477/713 (66%), Gaps = 99/713 (13%)
Query: 17 INECTSNQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEI 76
I C KY ++Y++S+E PE FW +V WSK W ++LDN+ QPFTKWF+GGE+
Sbjct: 30 IINCHHISCPKYDESYKESLENPEKFWGNVAQCIDWSKPWKKVLDNTKQPFTKWFIGGEL 89
Query: 77 NACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDR 136
NACYNA+DRH+ G KVALIHDSP T +I+K+TY EL ++VSLLAG LA +GV GD
Sbjct: 90 NACYNAVDRHILAGNGNKVALIHDSPQTSTIQKITYNELLKKVSLLAGVLANMGVGKGDV 149
Query: 137 VLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNK 196
V+IYMPLIPE I+++LAT RLGAIHSVVFGGFAA EL R+ HAKPKVIIAASCG+EP+K
Sbjct: 150 VIIYMPLIPETIMAILATTRLGAIHSVVFGGFAANELAIRINHAKPKVIIAASCGIEPSK 209
Query: 197 VVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPG-YDILWDDALAQRLSHRCVPVE 255
+VRY +LN A+ + S K CIIFQRR + E+ L +D WD+ + + H C PVE
Sbjct: 210 IVRYTDMLNGAMNLISVKKPQCIIFQRRNIWESPLLEDQFD--WDEVIKRSKPHPCEPVE 267
Query: 256 ANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWW 315
AN PLYI+YTSGTTG QPKGILR VGGH+ L WTM +Y M +D VWW
Sbjct: 268 ANAPLYIMYTSGTTG------------QPKGILRTVGGHLVALCWTMKTVYGMNKDSVWW 315
Query: 316 TASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTAL 375
ASDMGWVVGHSYICYGPL GITSVMYEGKPDRTPD +QY+RVI H VN LF PTAL
Sbjct: 316 VASDMGWVVGHSYICYGPLLYGITSVMYEGKPDRTPDAAQYFRVIDQHNVNALFCVPTAL 375
Query: 376 RVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSI 435
R+IRR D D +L +YS SL+ +FVAGE CD+ETK WAEK+F V +LN+WWQTETGH I
Sbjct: 376 RIIRRADPDLSLSRKYSMKSLKTIFVAGEFCDYETKIWAEKAFKVPILNNWWQTETGHPI 435
Query: 436 TAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQ 495
TA CLGY H+ PKYSTGLP PGY
Sbjct: 436 TALCLGYGHNPGLPKYSTGLPIPGY----------------------------------- 460
Query: 496 NATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGY 555
+ I+R + +E E HELGRIV+KLPLPPG +STLY ++F +IYF+++PGY
Sbjct: 461 --------HIDILRENSNEAEAHELGRIVIKLPLPPGCVSTLYHNDKKFKEIYFSRYPGY 512
Query: 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTK 615
YDTMD GY DE GY+YV ARDDDVINVAGHRLSTSALEDV+L+H DV D AVIGVP+PTK
Sbjct: 513 YDTMDVGYKDEFGYVYVMARDDDVINVAGHRLSTSALEDVILTHSDVVDAAVIGVPDPTK 572
Query: 616 GEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDE 675
GEIP CLYI K+ T++++
Sbjct: 573 GEIPLCLYIMKQ-----------------------------------------EATKNEK 591
Query: 676 EIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKPLRV 728
+I EL VR IGPIA+F+++ +V+ LPRTRSGK RKSI ++AR++ ++
Sbjct: 592 QINDELIARVRSLIGPIASFRIAAAVSALPRTRSGKIIRKSIANLARSRLFKI 644
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157115668|ref|XP_001652651.1| acetyl-coa synthetase [Aedes aegypti] gi|108876798|gb|EAT41023.1| AAEL007283-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/706 (54%), Positives = 474/706 (67%), Gaps = 99/706 (14%)
Query: 20 CTSNQNDKYYDAYRKSIEAPESFWTDVG-NMATWSKKWDRILDNSDQPFTKWFVGGEINA 78
C + N Y+D YR+SIE P++FW ++ + W K WD ++D+S++PFTKW+VGGE+NA
Sbjct: 10 CIDSGNPLYHDVYRRSIEEPQAFWGELAEQLIDWDKPWDTVVDDSNRPFTKWYVGGELNA 69
Query: 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVL 138
CYN +DRHV+ KVALIHDSP+T +IR+VTY EL E+VS LAG L +GV GDRV+
Sbjct: 70 CYNTLDRHVQNNKGNKVALIHDSPMTNTIRRVTYNELYEKVSRLAGGLKKLGVKKGDRVV 129
Query: 139 IYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVV 198
IYMPLIPEAI++MLATVRLGAIHSVVFGGFAA ELC R+EHA+PKVIIAA+CG+EPNK++
Sbjct: 130 IYMPLIPEAIMAMLATVRLGAIHSVVFGGFAASELCTRIEHAEPKVIIAANCGIEPNKII 189
Query: 199 RYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEAND 258
Y IL+EA+E+S KP +IFQR + ++L D+ W+ L + CVPVEAND
Sbjct: 190 HYLDILHEAVEMSKWKPRTNVIFQRSNILISDLDKRMDVTWESTLDEPTG--CVPVEAND 247
Query: 259 PLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTAS 318
PLYILYTSGTT D+PKGI RP GGH+ TL +TM IY + DDVWW AS
Sbjct: 248 PLYILYTSGTT------------DKPKGITRPTGGHLVTLMYTMDTIYGVQPDDVWWNAS 295
Query: 319 DMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVI 378
D+GWVVGHSYICYGPL G TSVMYEGKPDRTPDP QY+R+I HKV LF+ PT+ RV+
Sbjct: 296 DLGWVVGHSYICYGPLLYGATSVMYEGKPDRTPDPGQYFRLIDQHKVTALFSVPTSFRVL 355
Query: 379 RREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAH 438
RR D D G +YS SLR +F+AGEHCD ETK W EK+F V +LN+WWQTETG ++TA
Sbjct: 356 RRTDPDVKYGKKYSMKSLRTIFIAGEHCDSETKMWIEKTFRVPVLNNWWQTETGSAMTAT 415
Query: 439 CLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNAT 498
C+G + PP ++TGLPF GYD
Sbjct: 416 CVGLAQNLNPPNFTTGLPFCGYD------------------------------------- 438
Query: 499 HFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDT 558
+R++ DG+E +P+ELGR+VVKLPLPPGTMSTLY+ + F +YF K+PGYYDT
Sbjct: 439 ------IRVLHPDGTEADPNELGRLVVKLPLPPGTMSTLYRNAELFENLYFHKYPGYYDT 492
Query: 559 MDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEI 618
MDAGY DE GY+YVTARDDDVINVAGHR+STS+LED VL HPD+ D AV GVPEPTKG+I
Sbjct: 493 MDAGYKDEKGYVYVTARDDDVINVAGHRISTSSLEDAVLRHPDIADAAVFGVPEPTKGQI 552
Query: 619 PFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIG 678
P CLY+ K G S ++ ++
Sbjct: 553 PLCLYVIKE------GVS-----------------------------------KATAKLS 571
Query: 679 KELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNK 724
EL L+RE IGPIAAF+L V GLPRTRSGKT RK++ D A NK
Sbjct: 572 VELISLIREVIGPIAAFRLVGRVDGLPRTRSGKTMRKAMADFAANK 617
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380016036|ref|XP_003691999.1| PREDICTED: LOW QUALITY PROTEIN: acyl-CoA synthetase short-chain family member 3, mitochondrial-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/703 (54%), Positives = 473/703 (67%), Gaps = 99/703 (14%)
Query: 27 KYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDRH 86
KY ++Y++S+E PE FW ++ WSK W ++LDN+ QPFTKWF+GGE+NACYNA+DRH
Sbjct: 33 KYDESYKESLENPEKFWGNIAQCIDWSKPWKKVLDNTKQPFTKWFIGGELNACYNAVDRH 92
Query: 87 VERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPE 146
+ G KVALIHDSP T +++K+TY EL +++SLLAG LA +GV GD V+IYMPLIPE
Sbjct: 93 ILAGNGNKVALIHDSPQTSTVQKITYNELLKKISLLAGVLANMGVGKGDVVIIYMPLIPE 152
Query: 147 AIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNE 206
I+++LAT RLGA+HSVVFGGFAA EL R+ HAKPKVIIAASCGVEP+K+VRY +LN
Sbjct: 153 TIIAILATTRLGAVHSVVFGGFAANELAIRINHAKPKVIIAASCGVEPSKIVRYTDMLNG 212
Query: 207 ALEISSCKPDYCIIFQRRCVEEAELTPG-YDILWDDALAQRLSHRCVPVEANDPLYILYT 265
A+ + S K CIIFQRR + E+ L +D WD+ + + H C PVEAN PLYI+YT
Sbjct: 213 AMNLISVKKPQCIIFQRRNIWESPLLEDQFD--WDEMIKRSKPHPCEPVEANAPLYIMYT 270
Query: 266 SGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVG 325
SGTTG QPKGILR +GGH+ L WTM +Y M +D VWW ASDMGWVVG
Sbjct: 271 SGTTG------------QPKGILRTIGGHLVALCWTMKTVYGMNKDSVWWVASDMGWVVG 318
Query: 326 HSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDS 385
HSYICYGPL GITSVMYEGKPDRTPD +QY+RVI H VN LF PTALR+IRR D D
Sbjct: 319 HSYICYGPLLYGITSVMYEGKPDRTPDAAQYFRVIDQHNVNALFCVPTALRIIRRADPDL 378
Query: 386 TLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHD 445
+L +YS SL+ +FVAGE CDHETK WAEK+F V +LN+WWQTETGH ITA CLGY H+
Sbjct: 379 SLSRKYSVKSLKTIFVAGEFCDHETKIWAEKAFKVPILNNWWQTETGHPITALCLGYGHN 438
Query: 446 TVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEV 505
PKYSTGLP PGY +
Sbjct: 439 PSLPKYSTGLPIPGY-------------------------------------------HI 455
Query: 506 RIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYD 565
I+R + +E E HELGRIV+KLPLPPG +STLY + F ++YF+ +PGYYDTMD GY D
Sbjct: 456 DILRENSNEAEAHELGRIVIKLPLPPGCVSTLYHDDKXFKEVYFSTYPGYYDTMDVGYKD 515
Query: 566 ENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIK 625
E GY+YV ARDDDVINVAGHRLSTSALEDV+L+H DV D AVIGVP+PTKGEIP CLYI
Sbjct: 516 EFGYVYVMARDDDVINVAGHRLSTSALEDVILTHSDVVDAAVIGVPDPTKGEIPLCLYIM 575
Query: 626 KRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELV 685
K+ T+++++I EL V
Sbjct: 576 KQ-----------------------------------------EATKNEKQINDELIARV 594
Query: 686 REAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKPLRV 728
R IGPIA+F+++ +V+ LPRTRSGK RKSI ++AR++ ++
Sbjct: 595 RSLIGPIASFRIAAAVSALPRTRSGKIIRKSIANLARSRLFKI 637
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350414928|ref|XP_003490474.1| PREDICTED: acyl-CoA synthetase short-chain family member 3, mitochondrial-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/703 (55%), Positives = 471/703 (66%), Gaps = 99/703 (14%)
Query: 27 KYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDRH 86
+Y +AY++S+E PE FW +V WSK WD++LDNS QPFTKWFVGGE+NACYNA+DRH
Sbjct: 41 RYDEAYKESLENPERFWGEVARCIDWSKPWDKVLDNSKQPFTKWFVGGELNACYNAVDRH 100
Query: 87 VERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPE 146
V G KVALIHDSP +IRKVTY EL ++ SLLAG+LA +GV GD V++YMPLIPE
Sbjct: 101 VLAGNGDKVALIHDSPQISTIRKVTYNELLDKTSLLAGALADMGVGEGDAVIVYMPLIPE 160
Query: 147 AIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNE 206
I+++LAT RLGA+HSVVFGGFAA EL R+ HAKPKV+IAASCG+EP+K+V+Y +LN
Sbjct: 161 TIIAILATTRLGAVHSVVFGGFAANELAVRINHAKPKVVIAASCGLEPSKIVKYTDMLNS 220
Query: 207 ALEISSCKPDYCIIFQRRCVEEAELTPG-YDILWDDALAQRLSHRCVPVEANDPLYILYT 265
A++I S K CI+FQRR + ++ L+ YD WDD + + C PVEAN PLYILYT
Sbjct: 221 AMKIISVKRPRCIVFQRRNIWQSALSEDQYD--WDDVMNRSKPRACQPVEANAPLYILYT 278
Query: 266 SGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVG 325
SGTTG QPKGILR VGGH+ + WTM +Y M +D VWW ASDMGWVVG
Sbjct: 279 SGTTG------------QPKGILRSVGGHLVAVCWTMKTVYGMDKDSVWWVASDMGWVVG 326
Query: 326 HSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDS 385
HSYICYGPL G TSVMYEGKPDRTPD +QY+RVI H+VN LF PTALRVIRR D D
Sbjct: 327 HSYICYGPLLYGATSVMYEGKPDRTPDAAQYFRVIDQHRVNALFCVPTALRVIRRVDPDL 386
Query: 386 TLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHD 445
LG +YS L+ +FVAGE CD++TK WAEK+F V +LN+WWQ+ETGH ITA CL Y H+
Sbjct: 387 LLGRKYSMQCLKTVFVAGEFCDYKTKTWAEKAFKVPILNNWWQSETGHPITALCLDYGHN 446
Query: 446 TVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEV 505
PKYSTGLP PGY +
Sbjct: 447 PGLPKYSTGLPIPGY-------------------------------------------HI 463
Query: 506 RIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYD 565
I+R + SE E ELGRI +KLPLPPG +STLY+ RF +IYF+ +PGYYDTMD GY D
Sbjct: 464 DILRENSSEAEARELGRIAIKLPLPPGCISTLYQDDDRFEEIYFSTYPGYYDTMDVGYKD 523
Query: 566 ENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIK 625
E GY+YV ARDDDVINVAGHRLSTSALEDVVL+HPD+ D AV+GVP+PTKGEIP CLYI
Sbjct: 524 EFGYVYVMARDDDVINVAGHRLSTSALEDVVLAHPDIVDAAVVGVPDPTKGEIPLCLYIM 583
Query: 626 KRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELV 685
K + R++++I +EL V
Sbjct: 584 KEEAM-----------------------------------------RNEKQINEELVARV 602
Query: 686 REAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKPLRV 728
R IGPIA+FK + +V LPRTRSGK RKSI ++AR+K +++
Sbjct: 603 RNLIGPIASFKTAAAVRALPRTRSGKLIRKSIANLARSKLVKI 645
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195151843|ref|XP_002016848.1| GL21853 [Drosophila persimilis] gi|194111905|gb|EDW33948.1| GL21853 [Drosophila persimilis] | Back alignment and taxonomy information |
|---|
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/701 (54%), Positives = 474/701 (67%), Gaps = 100/701 (14%)
Query: 28 YYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDRHV 87
Y +AYR+SI+ P +FW + G++ W + W ++LDNS+ PF+KW+VGG +NACYNAIDRH+
Sbjct: 31 YLEAYRQSIQNPVAFWEEQGHLLDWDRPWQQVLDNSNPPFSKWYVGGYLNACYNAIDRHI 90
Query: 88 ERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEA 147
G ++VALIHDSP+T ++R+VTY EL +Q+ LLAG LA +GV GDRV+IYMPLIPE
Sbjct: 91 LAGRGEQVALIHDSPLTGTVRRVTYQELYDQIILLAGGLAKMGVVKGDRVVIYMPLIPET 150
Query: 148 IVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEA 207
I++MLA VRLGAIHSVVFGGFAARELC+R+EH +PK++IA++ GVEP KVV Y IL+ A
Sbjct: 151 IIAMLAIVRLGAIHSVVFGGFAARELCSRIEHVEPKLVIASNVGVEPGKVVPYLEILHSA 210
Query: 208 LEISSCKP-DYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHR---CVPVEANDPLYIL 263
+ +S P IIF R V + G D+LW D LA +++ CVP+EANDPLYIL
Sbjct: 211 INMSRWHPPQRNIIFMRDNVSVDTVDEGADVLWSDVLAMADANQPIACVPIEANDPLYIL 270
Query: 264 YTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWV 323
YTSGTT D+PKG+LR +GGH+ L +T+ IY +G D+WW ASDMGWV
Sbjct: 271 YTSGTT------------DKPKGVLRTIGGHLVALMYTLKRIYGIGPGDIWWAASDMGWV 318
Query: 324 VGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDK 383
VGHSYICYGPL G TSVMYEGKPDRTPDP QY+R+I +KV +F+ PT+ RVIRR D
Sbjct: 319 VGHSYICYGPLCLGATSVMYEGKPDRTPDPGQYFRIIDQYKVRSIFSVPTSFRVIRRADP 378
Query: 384 DSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQ 443
D + G QYS SLR +F+AGEHCD+ETK W EK+F V LNHWWQTETG ++TA CLG+Q
Sbjct: 379 DISYGRQYSMKSLRAIFIAGEHCDYETKMWIEKTFKVPALNHWWQTETGSAVTATCLGFQ 438
Query: 444 HDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSV 503
PP YSTGLP GYD
Sbjct: 439 QSLSPPTYSTGLPLMGYD------------------------------------------ 456
Query: 504 EVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGY 563
V+I++ DGSECE ELGRIV+K+PLPPG M+TLYK + F K+YF KFPGYYDTMDAGY
Sbjct: 457 -VKILKPDGSECESSELGRIVLKMPLPPGNMATLYKNEELFRKLYFQKFPGYYDTMDAGY 515
Query: 564 YDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLY 623
DE GYI+VTARDDDVINVAGHR+STS+LED VL HPDV D AV GVPEPTKG++P CLY
Sbjct: 516 KDERGYIFVTARDDDVINVAGHRISTSSLEDAVLRHPDVVDVAVFGVPEPTKGQVPLCLY 575
Query: 624 IKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKE 683
I P+ + C ++D ++ E+ +
Sbjct: 576 I---------------------------------------PVEN--CRKTDAKLSTEIIK 594
Query: 684 LVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNK 724
L+R+ +GPIAAF+L TSV LPRTRSGKT RK++ D ARN+
Sbjct: 595 LIRDVVGPIAAFRLITSVNNLPRTRSGKTMRKAMADFARNE 635
|
Source: Drosophila persimilis Species: Drosophila persimilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 737 | ||||||
| FB|FBgn0039184 | 674 | CG6432 [Drosophila melanogaste | 0.624 | 0.682 | 0.550 | 6.8e-209 | |
| MGI|MGI:2685720 | 682 | Acss3 "acyl-CoA synthetase sho | 0.594 | 0.642 | 0.497 | 7.4e-170 | |
| UNIPROTKB|Q9H6R3 | 686 | ACSS3 "Acyl-CoA synthetase sho | 0.613 | 0.658 | 0.483 | 1.1e-168 | |
| UNIPROTKB|A7MB45 | 686 | ACSS3 "Acyl-CoA synthetase sho | 0.602 | 0.647 | 0.496 | 2e-167 | |
| UNIPROTKB|F1RYM4 | 685 | ACSS3 "Uncharacterized protein | 0.601 | 0.646 | 0.501 | 5.2e-167 | |
| UNIPROTKB|F1MQV8 | 686 | ACSS3 "Acyl-CoA synthetase sho | 0.602 | 0.647 | 0.494 | 1.7e-166 | |
| UNIPROTKB|F1NSL2 | 645 | ACSS3 "Uncharacterized protein | 0.573 | 0.655 | 0.490 | 7.5e-164 | |
| UNIPROTKB|F1P5S3 | 646 | ACSS3 "Uncharacterized protein | 0.573 | 0.654 | 0.490 | 7.5e-164 | |
| UNIPROTKB|F1P5S5 | 642 | ACSS3 "Uncharacterized protein | 0.573 | 0.658 | 0.490 | 7.5e-164 | |
| TIGR_CMR|SPO_2934 | 629 | SPO_2934 "propionate--CoA liga | 0.568 | 0.666 | 0.491 | 3.7e-162 |
| FB|FBgn0039184 CG6432 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1415 (503.2 bits), Expect = 6.8e-209, Sum P(3) = 6.8e-209
Identities = 267/485 (55%), Positives = 342/485 (70%)
Query: 28 YYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDRHV 87
Y AYR+S++ P +FW + GN+ W + W+++LDNS+ PFTKW+VGG +NACYN+IDRH+
Sbjct: 28 YLKAYRQSVQNPAAFWEEQGNLLDWDRPWEKVLDNSNPPFTKWYVGGYLNACYNSIDRHI 87
Query: 88 ERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEA 147
G VALIHDSP+T ++R+VTY EL +Q+ LLAG LA +GV GDRV+IYMPLIPE
Sbjct: 88 LAGRGSNVALIHDSPLTGTLRRVTYQELYDQIVLLAGGLAKLGVVKGDRVVIYMPLIPET 147
Query: 148 IVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEA 207
I++MLA VRLGAIHSVVFGGFAARELC+R+EH +PK++IA++ GVEP KVV Y IL+ A
Sbjct: 148 IIAMLAIVRLGAIHSVVFGGFAARELCSRIEHVEPKLVIASNVGVEPGKVVPYLDILHSA 207
Query: 208 LEISSCKPDYC-IIFQRRCV--EEAELTPGYDILWDDALAQRLSHR---CVPVEANDPLY 261
+ +S +P IIF+R V + +L P D+LW D L R CVP+EANDPLY
Sbjct: 208 ISMSRWRPPQRNIIFRRDNVSPDTTKLDPLTDVLWSDILKMAEGERPIACVPIEANDPLY 267
Query: 262 ILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMG 321
ILYTSGTT D+PKG+LR +GGH+ L +T+ +Y + WW ASDMG
Sbjct: 268 ILYTSGTT------------DKPKGVLRTIGGHLVALVYTLRTLYGINPGHTWWAASDMG 315
Query: 322 WVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRE 381
WVVGHSYICYGPL G TSVMYEGKPDRTPDP QY+R+I ++V +F+ PT+ RVIRR
Sbjct: 316 WVVGHSYICYGPLCLGATSVMYEGKPDRTPDPGQYFRIIDQYQVRSIFSVPTSFRVIRRA 375
Query: 382 DKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLG 441
D D + G QYS SLR +F+AGEHCD+ETK+W EK+F V +LNHWWQTETG ++TA CLG
Sbjct: 376 DPDISYGRQYSMKSLRAIFIAGEHCDYETKSWIEKTFKVPVLNHWWQTETGSAVTATCLG 435
Query: 442 YQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDG-RAHCVRILPESLRKNVPKGQNATHF 500
+Q + PP YSTGLP GYD K + DG A + +L+ +P G AT +
Sbjct: 436 FQQNLSPPTYSTGLPLMGYDVKILKA------DGSEAQTSELGRIALKLPLPPGNMATLY 489
Query: 501 TSVEV 505
+ E+
Sbjct: 490 KNEEL 494
|
|
| MGI|MGI:2685720 Acss3 "acyl-CoA synthetase short-chain family member 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1197 (426.4 bits), Expect = 7.4e-170, Sum P(3) = 7.4e-170
Identities = 224/450 (49%), Positives = 290/450 (64%)
Query: 12 FSGNKINECTSNQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWF 71
F G T+ +Y + S+ PE FW +W K W + L++ P T WF
Sbjct: 41 FGGRGCRALTTGSGGEYKTHFAASVADPERFWGKAAEQISWYKPWTKTLESRYPPSTSWF 100
Query: 72 VGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGV 131
V G +N CYNAIDRH+E G K+A+I+DSPVT + ++Y E+ EQVS LAG L GV
Sbjct: 101 VEGMLNICYNAIDRHIENGQGDKIAIIYDSPVTDTKATISYKEVLEQVSKLAGVLVKQGV 160
Query: 132 SAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCG 191
GD V+IYMP+IP+AI +MLA R+GAIHS++FGGFA++EL R++HAKPKV++ AS G
Sbjct: 161 KKGDTVVIYMPMIPQAIYTMLACARIGAIHSLIFGGFASKELSTRIDHAKPKVVVTASFG 220
Query: 192 VEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRC 251
+EP + V Y +L EAL I +PD +I+ R +E+ L G D+ W++ +A+ SH C
Sbjct: 221 IEPGRKVEYIPLLEEALRIGQHRPDRVLIYSRPNMEKVPLMSGRDLDWEEEMAKAQSHDC 280
Query: 252 VPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQD 311
VPV + PLYILYTSGTTG P KG++RP GG+ L WTMS IY +
Sbjct: 281 VPVLSEHPLYILYTSGTTGLP------------KGVVRPTGGYAVMLNWTMSSIYGLKPG 328
Query: 312 DVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTA 371
+VWW ASD+GWVVGHSYICYGPL G T+V+YEGKP TPD Y+RV+ H V LFTA
Sbjct: 329 EVWWAASDLGWVVGHSYICYGPLLHGNTTVLYEGKPVGTPDAGAYFRVLAEHGVAALFTA 388
Query: 372 PTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTET 431
PTA+R IR++D + LG QYS + LFVAGE CD ET W++K F V +L+HWWQTET
Sbjct: 389 PTAIRAIRQQDPGAALGKQYSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTET 448
Query: 432 GHSITAHCLGYQHDTVPPKYSTGLPFPGYD 461
G ITA C+G + PP G PGY+
Sbjct: 449 GSPITASCIGLGNSKTPPPGQAGKCVPGYN 478
|
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| UNIPROTKB|Q9H6R3 ACSS3 "Acyl-CoA synthetase short-chain family member 3, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1200 (427.5 bits), Expect = 1.1e-168, Sum P(3) = 1.1e-168
Identities = 226/467 (48%), Positives = 297/467 (63%)
Query: 14 GNKINECTSNQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVG 73
G +S +Y + S+ PE FW +W K W + L+N P T+WFV
Sbjct: 48 GRGCRALSSGSGSEYKTHFAASVTDPERFWGKAAEQISWYKPWTKTLENKHSPSTRWFVE 107
Query: 74 GEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSA 133
G +N CYNA+DRH+E G K+A+I+DSPVT + TY E+ EQVS LAG L G+
Sbjct: 108 GMLNICYNAVDRHIENGKGDKIAIIYDSPVTNTKATFTYKEVLEQVSKLAGVLVKHGIKK 167
Query: 134 GDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVE 193
GD V+IYMP+IP+A+ +MLA R+GAIHS++FGGFA++EL +R++H KPKV++ AS G+E
Sbjct: 168 GDTVVIYMPMIPQAMYTMLACARIGAIHSLIFGGFASKELSSRIDHVKPKVVVTASFGIE 227
Query: 194 PNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVP 253
P + V Y ++ EAL+I KPD +I+ R +E L PG D+ WD+ +A+ SH CVP
Sbjct: 228 PGRRVEYVPLVEEALKIGQHKPDKILIYNRPNMEAVPLAPGRDLDWDEEMAKAQSHDCVP 287
Query: 254 VEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDV 313
V + PLYILYTSGTTG P KG++RP GG+ L W+MS IY + +V
Sbjct: 288 VLSEHPLYILYTSGTTGLP------------KGVIRPTGGYAVMLHWSMSSIYGLQPGEV 335
Query: 314 WWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPT 373
WW ASD+GWVVGHSYICYGPL G T+V+YEGKP TPD Y+RV+ H V LFTAPT
Sbjct: 336 WWAASDLGWVVGHSYICYGPLLHGNTTVLYEGKPVGTPDAGAYFRVLAEHGVAALFTAPT 395
Query: 374 ALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGH 433
A+R IR++D + LG QYS + LFVAGE CD ET W++ F V +L+HWWQTETG
Sbjct: 396 AIRAIRQQDPGAALGKQYSLTRFKTLFVAGERCDVETLEWSKNVFRVPVLDHWWQTETGS 455
Query: 434 SITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCV 480
ITA C+G + PP G PGY+ V I+ N +A C+
Sbjct: 456 PITASCVGLGNSKTPPPGQAGKSVPGYN---VMILDDNMQKLKARCL 499
|
|
| UNIPROTKB|A7MB45 ACSS3 "Acyl-CoA synthetase short-chain family member 3, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1199 (427.1 bits), Expect = 2.0e-167, Sum P(3) = 2.0e-167
Identities = 228/459 (49%), Positives = 295/459 (64%)
Query: 22 SNQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYN 81
S+ +Y + S+ PE FW +W K W + L+N P T WFV G +N CYN
Sbjct: 55 SSGGGEYKTHFAASVTDPERFWGKAAEQISWYKPWTKTLENRHSPSTSWFVEGMLNICYN 114
Query: 82 AIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYM 141
AIDRH+E G K+A+I+DSPVT + +TY E+ EQVS LAG L GV GD V+IYM
Sbjct: 115 AIDRHIENGKGDKIAIIYDSPVTNTKATITYKEVLEQVSKLAGVLVKHGVKKGDTVVIYM 174
Query: 142 PLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYK 201
P+IP+A+ +MLA R+GAIHS++FGGFA++EL R++HAKPK++I AS G+EP + V Y
Sbjct: 175 PMIPQAMYAMLACARIGAIHSLIFGGFASKELSTRIDHAKPKLVITASFGIEPGRKVEYV 234
Query: 202 TILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLY 261
++ EAL I KPD +I+ R + L PGY + WD+ L++ SH CVPV + PLY
Sbjct: 235 PLVEEALRIGQHKPDKVLIYNRPHTDMVPLAPGYYLDWDEELSKAQSHDCVPVLSEHPLY 294
Query: 262 ILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMG 321
ILYTSGTTG P KG++RP GG+ L W+MS IY + +VWW ASD+G
Sbjct: 295 ILYTSGTTGLP------------KGVVRPTGGYAVMLNWSMSSIYGLKPGEVWWAASDLG 342
Query: 322 WVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRE 381
WVVGHSYICYGPL G T+V+YEGKP TPD Y+RV+ H V LFTAPTA+R IR++
Sbjct: 343 WVVGHSYICYGPLLHGNTTVLYEGKPVGTPDAGAYFRVLAEHGVAALFTAPTAIRAIRQQ 402
Query: 382 DKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLG 441
D + LG QYS + LFVAGE CD ET W++K F V +L+HWWQTETG ITA C+G
Sbjct: 403 DPGAALGKQYSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCIG 462
Query: 442 YQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCV 480
+ PP G PGY+ V I+ N +A C+
Sbjct: 463 LGNSKTPPPGQAGKSVPGYN---VMILDDNMQKLKARCL 498
|
|
| UNIPROTKB|F1RYM4 ACSS3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1185 (422.2 bits), Expect = 5.2e-167, Sum P(3) = 5.2e-167
Identities = 230/459 (50%), Positives = 295/459 (64%)
Query: 22 SNQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYN 81
S+ +Y + S+ PE FW +W K W + L+N T WFV G +N CYN
Sbjct: 55 SSSCGEYKRHFAASVADPERFWGKAAEQISWYKPWTKTLENRHSSSTSWFVEGMLNMCYN 114
Query: 82 AIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYM 141
AIDRH+E G KVA+I+DSPVT + +TY E+ EQVS LAG L GVS GD V+IYM
Sbjct: 115 AIDRHIESGKGDKVAIIYDSPVTDTKATITYKEVLEQVSRLAGVLVKHGVSKGDTVVIYM 174
Query: 142 PLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYK 201
P+IP+A+ +MLA R+GAIHS++FGGFA++EL +R++HAKPKV++ AS G+EP + V Y
Sbjct: 175 PMIPQAMYTMLACARIGAIHSLIFGGFASKELSSRIDHAKPKVVVTASFGIEPGRKVEYM 234
Query: 202 TILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLY 261
IL EA+ I KPD +I+ R +E L G D+ WD+ +A+ S CVPV + PLY
Sbjct: 235 PILEEAMRIGQHKPDK-LIYNRPNMETVPLASGRDLDWDEEMAKAQSQDCVPVLSEHPLY 293
Query: 262 ILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMG 321
ILYTSGTTG P KG++RP GG+ L WTMS IY + +VWW ASD+G
Sbjct: 294 ILYTSGTTGLP------------KGVVRPTGGYAVMLNWTMSSIYGLKPGEVWWAASDLG 341
Query: 322 WVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRE 381
WVVGHSYICYGPL G T+V+YEGKP TPD Y+RV+ H V LFTAPTA+R IR++
Sbjct: 342 WVVGHSYICYGPLIHGNTTVLYEGKPVGTPDAGAYFRVLAEHGVAALFTAPTAIRAIRQQ 401
Query: 382 DKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLG 441
D + LG QYS + LFVAGE CD ET W++K F V +L+HWWQTETG ITA C+G
Sbjct: 402 DPGAALGKQYSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCIG 461
Query: 442 YQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCV 480
+ PP G PGY+ V I+ N +A C+
Sbjct: 462 LGNSKTPPPGQAGKSVPGYN---VMILDDNMQKLKARCL 497
|
|
| UNIPROTKB|F1MQV8 ACSS3 "Acyl-CoA synthetase short-chain family member 3, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1190 (424.0 bits), Expect = 1.7e-166, Sum P(3) = 1.7e-166
Identities = 227/459 (49%), Positives = 294/459 (64%)
Query: 22 SNQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYN 81
S+ +Y + S+ PE FW +W K W + L+N P T WFV G +N CYN
Sbjct: 55 SSGGGEYKTHFAASVTDPERFWGKAAEQISWYKPWTKTLENRHSPSTSWFVEGMLNICYN 114
Query: 82 AIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYM 141
AIDRH+E G K+A+I+DSPVT + +TY E+ EQVS LAG L GV GD V+IYM
Sbjct: 115 AIDRHIENGKGDKIAIIYDSPVTNTKATITYKEVLEQVSKLAGVLVKHGVKKGDTVVIYM 174
Query: 142 PLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYK 201
P+IP+A+ +MLA R+GAIHS++FGGFA++EL R++HAKPK++I AS G+EP + V Y
Sbjct: 175 PMIPQAMYAMLACARIGAIHSLIFGGFASKELSTRIDHAKPKLVITASFGIEPGRKVEYV 234
Query: 202 TILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLY 261
++ EAL I KPD +I+ R + L PG + WD+ L++ SH CVPV + PLY
Sbjct: 235 PLVEEALRIGQHKPDKVLIYNRPHTDMVPLAPGCYLDWDEELSKAQSHDCVPVLSEHPLY 294
Query: 262 ILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMG 321
ILYTSGTTG P KG++RP GG+ L W+MS IY + +VWW ASD+G
Sbjct: 295 ILYTSGTTGLP------------KGVVRPTGGYAVMLNWSMSSIYGLKPGEVWWAASDLG 342
Query: 322 WVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRE 381
WVVGHSYICYGPL G T+V+YEGKP TPD Y+RV+ H V LFTAPTA+R IR++
Sbjct: 343 WVVGHSYICYGPLLHGNTTVLYEGKPVGTPDAGAYFRVLAEHGVAALFTAPTAIRAIRQQ 402
Query: 382 DKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLG 441
D + LG QYS + LFVAGE CD ET W++K F V +L+HWWQTETG ITA C+G
Sbjct: 403 DPGAALGKQYSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCIG 462
Query: 442 YQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCV 480
+ PP G PGY+ V I+ N +A C+
Sbjct: 463 LGNSKTPPPGQAGKSVPGYN---VMILDDNMQKLKARCL 498
|
|
| UNIPROTKB|F1NSL2 ACSS3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1171 (417.3 bits), Expect = 7.5e-164, Sum P(3) = 7.5e-164
Identities = 215/438 (49%), Positives = 290/438 (66%)
Query: 27 KYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDRH 86
+Y + +R S+ PE W + WS+ W R+L+ WFVGGE+N CYNA+DRH
Sbjct: 3 QYGEVFRSSVAEPEKVWGAAAELIQWSRPWARVLERRGPGSDSWFVGGELNICYNAVDRH 62
Query: 87 VERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPE 146
VE G +A+I+DSPVT + K+TY EL EQVS LA + GV GDRV+IYMP+IP+
Sbjct: 63 VENGRGDHIAIIYDSPVTNTKEKITYKELLEQVSKLADVMIRHGVKKGDRVVIYMPMIPQ 122
Query: 147 AIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNE 206
+ MLA R+GAIHS++FGGFA++EL R++HAKP++I+ AS GVEP + V Y ++L
Sbjct: 123 TVCCMLACARIGAIHSLIFGGFASKELSVRIDHAKPRLIVTASFGVEPKRKVEYISLLEG 182
Query: 207 ALEISSCKPDYCIIFQRRCVEEAE--LTPGYDILWDDALAQRLSHRCVPVEANDPLYILY 264
AL + KP+ +I++R + + LTPG D+ W++ L + ++CV V ++ PLYILY
Sbjct: 183 ALAMVQNKPEKVLIYRRPNLGQGHVPLTPGRDLDWEEELTKAQCYKCVSVPSDHPLYILY 242
Query: 265 TSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVV 324
TSGTTG P KG++RP GG+ L WTMS +Y + +VWW ASD+GWVV
Sbjct: 243 TSGTTGLP------------KGVIRPTGGYAVMLNWTMSAVYGLKPGEVWWAASDLGWVV 290
Query: 325 GHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKD 384
GHSYICYGPL G +V+YEGKP TPD Y+RV+ H+V FT+PTA+R IR++D +
Sbjct: 291 GHSYICYGPLLHGNPTVLYEGKPVGTPDAGAYFRVLAEHEVAAFFTSPTAIRAIRQQDPE 350
Query: 385 STLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQT-ETGHSITAHCLGYQ 443
+ LG QYS R LFVAGEHCD +T W++K F V +L+HWWQT E+G ITA C+G
Sbjct: 351 AALGKQYSLKRFRTLFVAGEHCDVDTLEWSKKVFKVPVLDHWWQTAESGSPITASCVGLG 410
Query: 444 HDTVPPKYSTGLPFPGYD 461
+ T PP G P PGY+
Sbjct: 411 NSTTPPPGQAGKPVPGYN 428
|
|
| UNIPROTKB|F1P5S3 ACSS3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1171 (417.3 bits), Expect = 7.5e-164, Sum P(3) = 7.5e-164
Identities = 215/438 (49%), Positives = 290/438 (66%)
Query: 27 KYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDRH 86
+Y + +R S+ PE W + WS+ W R+L+ WFVGGE+N CYNA+DRH
Sbjct: 18 QYGEVFRSSVAEPEKVWGAAAELIQWSRPWARVLERRGPGSDSWFVGGELNICYNAVDRH 77
Query: 87 VERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPE 146
VE G +A+I+DSPVT + K+TY EL EQVS LA + GV GDRV+IYMP+IP+
Sbjct: 78 VENGRGDHIAIIYDSPVTNTKEKITYKELLEQVSKLADVMIRHGVKKGDRVVIYMPMIPQ 137
Query: 147 AIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNE 206
+ MLA R+GAIHS++FGGFA++EL R++HAKP++I+ AS GVEP + V Y ++L
Sbjct: 138 TVCCMLACARIGAIHSLIFGGFASKELSVRIDHAKPRLIVTASFGVEPKRKVEYISLLEG 197
Query: 207 ALEISSCKPDYCIIFQRRCVEEAE--LTPGYDILWDDALAQRLSHRCVPVEANDPLYILY 264
AL + KP+ +I++R + + LTPG D+ W++ L + ++CV V ++ PLYILY
Sbjct: 198 ALAMVQNKPEKVLIYRRPNLGQGHVPLTPGRDLDWEEELTKAQCYKCVSVPSDHPLYILY 257
Query: 265 TSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVV 324
TSGTTG P KG++RP GG+ L WTMS +Y + +VWW ASD+GWVV
Sbjct: 258 TSGTTGLP------------KGVIRPTGGYAVMLNWTMSAVYGLKPGEVWWAASDLGWVV 305
Query: 325 GHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKD 384
GHSYICYGPL G +V+YEGKP TPD Y+RV+ H+V FT+PTA+R IR++D +
Sbjct: 306 GHSYICYGPLLHGNPTVLYEGKPVGTPDAGAYFRVLAEHEVAAFFTSPTAIRAIRQQDPE 365
Query: 385 STLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQT-ETGHSITAHCLGYQ 443
+ LG QYS R LFVAGEHCD +T W++K F V +L+HWWQT E+G ITA C+G
Sbjct: 366 AALGKQYSLKRFRTLFVAGEHCDVDTLEWSKKVFKVPVLDHWWQTAESGSPITASCVGLG 425
Query: 444 HDTVPPKYSTGLPFPGYD 461
+ T PP G P PGY+
Sbjct: 426 NSTTPPPGQAGKPVPGYN 443
|
|
| UNIPROTKB|F1P5S5 ACSS3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1171 (417.3 bits), Expect = 7.5e-164, Sum P(3) = 7.5e-164
Identities = 215/438 (49%), Positives = 290/438 (66%)
Query: 27 KYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDRH 86
+Y + +R S+ PE W + WS+ W R+L+ WFVGGE+N CYNA+DRH
Sbjct: 1 QYGEVFRSSVAEPEKVWGAAAELIQWSRPWARVLERRGPGSDSWFVGGELNICYNAVDRH 60
Query: 87 VERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPE 146
VE G +A+I+DSPVT + K+TY EL EQVS LA + GV GDRV+IYMP+IP+
Sbjct: 61 VENGRGDHIAIIYDSPVTNTKEKITYKELLEQVSKLADVMIRHGVKKGDRVVIYMPMIPQ 120
Query: 147 AIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNE 206
+ MLA R+GAIHS++FGGFA++EL R++HAKP++I+ AS GVEP + V Y ++L
Sbjct: 121 TVCCMLACARIGAIHSLIFGGFASKELSVRIDHAKPRLIVTASFGVEPKRKVEYISLLEG 180
Query: 207 ALEISSCKPDYCIIFQRRCVEEAE--LTPGYDILWDDALAQRLSHRCVPVEANDPLYILY 264
AL + KP+ +I++R + + LTPG D+ W++ L + ++CV V ++ PLYILY
Sbjct: 181 ALAMVQNKPEKVLIYRRPNLGQGHVPLTPGRDLDWEEELTKAQCYKCVSVPSDHPLYILY 240
Query: 265 TSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVV 324
TSGTTG P KG++RP GG+ L WTMS +Y + +VWW ASD+GWVV
Sbjct: 241 TSGTTGLP------------KGVIRPTGGYAVMLNWTMSAVYGLKPGEVWWAASDLGWVV 288
Query: 325 GHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKD 384
GHSYICYGPL G +V+YEGKP TPD Y+RV+ H+V FT+PTA+R IR++D +
Sbjct: 289 GHSYICYGPLLHGNPTVLYEGKPVGTPDAGAYFRVLAEHEVAAFFTSPTAIRAIRQQDPE 348
Query: 385 STLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQT-ETGHSITAHCLGYQ 443
+ LG QYS R LFVAGEHCD +T W++K F V +L+HWWQT E+G ITA C+G
Sbjct: 349 AALGKQYSLKRFRTLFVAGEHCDVDTLEWSKKVFKVPVLDHWWQTAESGSPITASCVGLG 408
Query: 444 HDTVPPKYSTGLPFPGYD 461
+ T PP G P PGY+
Sbjct: 409 NSTTPPPGQAGKPVPGYN 426
|
|
| TIGR_CMR|SPO_2934 SPO_2934 "propionate--CoA ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 1131 (403.2 bits), Expect = 3.7e-162, Sum P(3) = 3.7e-162
Identities = 214/435 (49%), Positives = 287/435 (65%)
Query: 28 YYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDRHV 87
Y D Y PE+FW + W + R LD+S+ P +WF ++N C+NA+DRHV
Sbjct: 3 YQDVYESWKSDPEAFWMEAAKSIDWVEAPSRALDDSNAPLYEWFTDAKVNTCWNAVDRHV 62
Query: 88 ERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEA 147
E G ++ A+I+DSP+T + R+++Y EL+ +V++LAG+L A GV GDRV+IYMP+IPEA
Sbjct: 63 EAGRGEQTAIIYDSPITHTKRQISYVELRNRVAMLAGALRAKGVEKGDRVIIYMPMIPEA 122
Query: 148 IVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEA 207
+ +MLA RLGA+HSVVFGGFAA EL R++ A+PK IIAASCG+EP +VV YK +L+ A
Sbjct: 123 LEAMLACARLGAVHSVVFGGFAANELAVRIDDAQPKAIIAASCGLEPGRVVHYKPLLDGA 182
Query: 208 LEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSG 267
++++ KP++C+IFQR E A L G D W CVPVE N P YILYTSG
Sbjct: 183 IDMAKHKPEFCVIFQRE-QEVAHLEEGRDYNWHGFQYGVEPAECVPVEGNHPAYILYTSG 241
Query: 268 TTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHS 327
TTG P KG+LRP GH+ L WTM IYN+ DV+W ASD+GWVVGHS
Sbjct: 242 TTGAP------------KGVLRPTAGHLVALNWTMKNIYNVDPGDVFWAASDVGWVVGHS 289
Query: 328 YICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTL 387
YICYGPL G T++++EGKP TPD ++RVI HKV FTAPTA+R ++RED +
Sbjct: 290 YICYGPLIHGNTTIVFEGKPVGTPDAGTFWRVISEHKVKSFFTAPTAIRAVKREDPKGEM 349
Query: 388 GAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTV 447
A+Y L+ L++AGE D +T WA+K+ +V +++HWWQTETG +I + LG + +
Sbjct: 350 LAKYDLSHLKALYLAGERADPDTIIWAQKALSVPVIDHWWQTETGWTIAGNPLGIEE--L 407
Query: 448 PPKY-STGLPFPGYD 461
P K S PGYD
Sbjct: 408 PTKLGSPAKAMPGYD 422
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A7MB45 | ACSS3_BOVIN | 6, ., 2, ., 1, ., 1 | 0.4419 | 0.8398 | 0.9023 | yes | N/A |
| Q14DH7 | ACSS3_MOUSE | 6, ., 2, ., 1, ., 1 | 0.4421 | 0.8426 | 0.9105 | yes | N/A |
| A4WJG1 | ACSA_PYRAR | 6, ., 2, ., 1, ., 1 | 0.3286 | 0.8100 | 0.8910 | yes | N/A |
| P28812 | Y3568_PSEAE | No assigned EC number | 0.3956 | 0.8073 | 0.9474 | yes | N/A |
| Q8PF09 | ACSA_XANAC | 6, ., 2, ., 1, ., 1 | 0.3300 | 0.8059 | 0.9180 | yes | N/A |
| A0KNI2 | ACSA_AERHH | 6, ., 2, ., 1, ., 1 | 0.3243 | 0.7951 | 0.9043 | yes | N/A |
| Q82EL5 | ACSA_STRAW | 6, ., 2, ., 1, ., 1 | 0.3347 | 0.8018 | 0.9064 | yes | N/A |
| Q2NXE2 | ACSA_XANOM | 6, ., 2, ., 1, ., 1 | 0.3272 | 0.8059 | 0.9180 | yes | N/A |
| B0SRX5 | ACSA_LEPBP | 6, ., 2, ., 1, ., 1 | 0.3154 | 0.8032 | 0.9051 | yes | N/A |
| P55912 | PRPE_SALTY | 6, ., 2, ., 1, ., 1, 7 | 0.3520 | 0.7299 | 0.8566 | yes | N/A |
| Q554Z5 | ACSB_DICDI | 6, ., 2, ., 1, ., 1 | 0.3681 | 0.7896 | 0.8459 | yes | N/A |
| Q4UP35 | ACSA_XANC8 | 6, ., 2, ., 1, ., 1 | 0.3328 | 0.8059 | 0.9180 | yes | N/A |
| Q9H6R3 | ACSS3_HUMAN | 6, ., 2, ., 1, ., 1 | 0.4378 | 0.8303 | 0.8921 | yes | N/A |
| Q9CMW1 | ACSA_PASMU | 6, ., 2, ., 1, ., 1 | 0.3208 | 0.7856 | 0.8866 | yes | N/A |
| O93730 | ACSA_PYRAE | 6, ., 2, ., 1, ., 1 | 0.3251 | 0.8331 | 0.9164 | yes | N/A |
| Q7NSY7 | ACSA_CHRVO | 6, ., 2, ., 1, ., 1 | 0.3314 | 0.7896 | 0.8899 | yes | N/A |
| Q72J95 | ACSA_THET2 | 6, ., 2, ., 1, ., 1 | 0.3314 | 0.7991 | 0.9089 | yes | N/A |
| Q72LY9 | ACSA_LEPIC | 6, ., 2, ., 1, ., 1 | 0.3300 | 0.8073 | 0.9001 | yes | N/A |
| Q5REB8 | ACSS3_PONAB | 6, ., 2, ., 1, ., 1 | 0.4378 | 0.8303 | 0.8921 | yes | N/A |
| Q12MK0 | ACSA_SHEDO | 6, ., 2, ., 1, ., 1 | 0.3182 | 0.8018 | 0.9078 | yes | N/A |
| Q5SIW6 | ACSA_THET8 | 6, ., 2, ., 1, ., 1 | 0.3314 | 0.7991 | 0.9089 | yes | N/A |
| Q8EDK3 | ACSA_SHEON | 6, ., 2, ., 1, ., 1 | 0.3194 | 0.8208 | 0.9307 | yes | N/A |
| Q6MNF1 | ACSA_BDEBA | 6, ., 2, ., 1, ., 1 | 0.3290 | 0.8005 | 0.9147 | yes | N/A |
| Q8P3L1 | ACSA_XANCP | 6, ., 2, ., 1, ., 1 | 0.3328 | 0.8059 | 0.9180 | yes | N/A |
| Q1H0J2 | ACSA_METFK | 6, ., 2, ., 1, ., 1 | 0.3261 | 0.7869 | 0.8868 | yes | N/A |
| Q9RRL7 | ACSA_DEIRA | 6, ., 2, ., 1, ., 1 | 0.3248 | 0.8018 | 0.9106 | yes | N/A |
| Q8EYG2 | ACSA_LEPIN | 6, ., 2, ., 1, ., 1 | 0.3314 | 0.7991 | 0.8910 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | 0.921 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 737 | |||
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 0.0 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 0.0 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 0.0 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 0.0 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 1e-179 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 1e-163 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 1e-162 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 1e-111 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 1e-99 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 8e-90 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 2e-84 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 1e-82 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 2e-71 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 2e-60 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 9e-60 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 2e-59 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 4e-58 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 2e-43 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 5e-43 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 2e-42 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 1e-40 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 1e-38 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 1e-37 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 3e-36 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 3e-33 | |
| pfam11930 | 82 | pfam11930, DUF3448, Domain of unknown function (DU | 2e-31 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 4e-31 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 9e-31 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 1e-29 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 5e-29 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 7e-29 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 1e-28 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 5e-27 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 8e-27 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 6e-26 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 1e-25 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 2e-25 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 2e-24 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 6e-23 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 6e-23 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 2e-22 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 2e-21 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 3e-21 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 1e-20 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 1e-20 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 3e-20 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 4e-20 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 1e-19 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 4e-19 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 8e-19 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 4e-18 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 5e-18 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 5e-18 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 6e-18 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 7e-18 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 2e-17 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 3e-17 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 6e-17 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 6e-17 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 7e-17 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 1e-16 | |
| PLN03052 | 728 | PLN03052, PLN03052, acetate--CoA ligase; Provision | 3e-16 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 7e-16 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 7e-16 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 1e-15 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 1e-15 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 1e-15 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 1e-15 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 3e-15 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 4e-15 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 4e-15 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 5e-15 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 2e-14 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 4e-14 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 4e-14 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 7e-14 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 1e-13 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 2e-13 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 2e-13 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 2e-13 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 5e-13 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 5e-13 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 7e-13 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 8e-13 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 1e-12 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 1e-12 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 4e-12 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 4e-12 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 5e-12 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 5e-12 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 5e-12 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 5e-12 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 8e-12 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 9e-12 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 9e-12 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 1e-11 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-11 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 3e-11 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 4e-11 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 4e-11 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 1e-10 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 1e-10 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 1e-10 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 1e-10 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 2e-10 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 3e-10 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 4e-10 | |
| PLN03051 | 499 | PLN03051, PLN03051, acyl-activating enzyme; Provis | 4e-10 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 6e-10 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 9e-10 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 1e-09 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 1e-09 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-09 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 2e-09 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 2e-09 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 2e-09 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 2e-09 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 2e-09 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 3e-09 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 3e-09 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 3e-09 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 3e-09 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 4e-09 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 5e-09 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 7e-09 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 7e-09 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 9e-09 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 9e-09 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 1e-08 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 1e-08 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 1e-08 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 2e-08 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 3e-08 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 3e-08 | |
| PRK08308 | 414 | PRK08308, PRK08308, acyl-CoA synthetase; Validated | 3e-08 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 4e-08 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 4e-08 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 4e-08 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 4e-08 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 5e-08 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 5e-08 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 6e-08 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 7e-08 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 7e-08 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 8e-08 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 8e-08 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 9e-08 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 1e-07 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 1e-07 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 1e-07 | |
| PRK13390 | 501 | PRK13390, PRK13390, acyl-CoA synthetase; Provision | 1e-07 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 1e-07 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-07 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 2e-07 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 4e-07 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 4e-07 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 4e-07 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 5e-07 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 6e-07 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 6e-07 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 8e-07 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 2e-06 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 2e-06 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 2e-06 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 3e-06 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 4e-06 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 4e-06 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 5e-06 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 6e-06 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 7e-06 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 7e-06 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 8e-06 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 8e-06 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 8e-06 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 9e-06 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 9e-06 | |
| PRK07445 | 452 | PRK07445, PRK07445, O-succinylbenzoic acid--CoA li | 1e-05 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 2e-05 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 4e-05 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 5e-05 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 5e-05 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 7e-05 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 9e-05 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 1e-04 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-04 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 1e-04 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 1e-04 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 2e-04 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 2e-04 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 3e-04 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 3e-04 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 4e-04 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 5e-04 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 5e-04 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 6e-04 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 8e-04 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 9e-04 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 0.001 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 0.001 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 0.002 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 0.002 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 0.002 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 0.002 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 0.003 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 0.003 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 0.003 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 0.004 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 0.004 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 862 bits (2228), Expect = 0.0
Identities = 318/692 (45%), Positives = 419/692 (60%), Gaps = 98/692 (14%)
Query: 37 EAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDRHVERGMAKKVA 96
+ PE+FW + N+ W K W+++LDNS+ PFT+WFVGG +N CYNA+DRH+E G ++A
Sbjct: 1 KEPEAFWAEQANLIDWYKPWEKVLDNSNPPFTRWFVGGRLNLCYNAVDRHIEDGRGDQIA 60
Query: 97 LIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVR 156
LI+DSPVT + R TYAEL ++VS LAG L +GV GDRV+IYMP+IPEA+++MLA R
Sbjct: 61 LIYDSPVTGTKRTYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACAR 120
Query: 157 LGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPD 216
+GAIHSVVFGGFA++EL +R++ AKPK+I+ AS G+EP +VV YK +L++ALE+S KP
Sbjct: 121 IGAIHSVVFGGFASKELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALELSQHKPH 180
Query: 217 YCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCS 276
+I R V A L PG D+ W + +A+ CVPVE+ DPLYILYTSGTTGK
Sbjct: 181 KVLILNRGQV-PAPLKPGRDLDWAELMAKARPVDCVPVESTDPLYILYTSGTTGK----- 234
Query: 277 ELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAA 336
PKG++R GG+ L W+M IY + DV+W ASD+GWVVGHSYI YGPL
Sbjct: 235 -------PKGVVRDTGGYAVALKWSMRNIYGIKPGDVFWAASDVGWVVGHSYIVYGPLLH 287
Query: 337 GITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSL 396
G T+V+YEGKP TPD Y+RVI + VN LFTAPTA+R IR++D D +Y SL
Sbjct: 288 GATTVLYEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAIRAIRKQDPDGEYIKKYDLSSL 347
Query: 397 RYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLP 456
R LF+AGE D T W EK+ V +++HWWQTETG ITA+C+G + + P S G P
Sbjct: 348 RALFLAGERLDSPTLEWIEKTLGVPVIDHWWQTETGWPITANCVGLELLPIKP-GSPGKP 406
Query: 457 FPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECE 516
PGYD V+++ G E
Sbjct: 407 VPGYD-------------------------------------------VQVLDETGEELG 423
Query: 517 PHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARD 576
P ELG IV+KLPLPPG + TL+ +RF K+Y KFPGYYDT D+GY DE+GY++V R
Sbjct: 424 PGELGNIVIKLPLPPGCLLTLWGDDERFKKLYLNKFPGYYDTGDSGYKDEDGYLFVMGRT 483
Query: 577 DDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFS 636
DDVINVAGHRLST +E+ VL HPDV + AV+GV + KG++P L + K
Sbjct: 484 DDVINVAGHRLSTGEMEESVLKHPDVAECAVVGVRDELKGQVPLGLVVLKD--------- 534
Query: 637 GLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFK 696
C +++ E+ LVRE IGP+AAF+
Sbjct: 535 --------------------------------DCKIDADQLENEIVALVREQIGPVAAFR 562
Query: 697 LSTSVTGLPRTRSGKTARKSIVDMARNKPLRV 728
V LP+TRSGK R+++ +A + +
Sbjct: 563 NVVFVKRLPKTRSGKILRRTLRKIADGEDYKD 594
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 573 bits (1480), Expect = 0.0
Identities = 255/700 (36%), Positives = 374/700 (53%), Gaps = 102/700 (14%)
Query: 26 DKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDR 85
Y + Y++SI+ PE+FW + W + ++LD S+ PF +WFVGG N C+NA+DR
Sbjct: 2 MSYSEFYQRSIDDPEAFWAEQARRIDWQTPFTQVLDYSNPPFARWFVGGRTNLCHNAVDR 61
Query: 86 HVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIP 145
H+ + +++ALI S T R T+ +L ++V+ +A L ++GV GDRVLIYMP+I
Sbjct: 62 HLAK-RPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIA 120
Query: 146 EAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILN 205
EA +MLA R+GAIHSVVFGGFA+ L AR++ AKP +I++A G KVV YK +L+
Sbjct: 121 EAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLD 180
Query: 206 EALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHR--CVPVEANDPLYIL 263
EA+ ++ KP + ++ R + G D+ + AQ L R +E+N+P YIL
Sbjct: 181 EAIALAQHKPRHVLLVDRG-LAPMARVAGRDVDYATLRAQHLGARVPVEWLESNEPSYIL 239
Query: 264 YTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWV 323
YTSGTTGK PKG+ R GG+ LA +M I+ + ++ ASD+GWV
Sbjct: 240 YTSGTTGK------------PKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWV 287
Query: 324 VGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDK 383
VGHSYI Y PL AG+ ++MYEG P R PD ++R++ +KVN +F+APTA+RV++++D
Sbjct: 288 VGHSYIVYAPLLAGMATIMYEGLPTR-PDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDP 346
Query: 384 DSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQ 443
L ++ SLR LF+AGE D T +W ++ V +++++WQTETG I A G
Sbjct: 347 A--LLRKHDLSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPILAIARGV- 403
Query: 444 HDTVPPKY-STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTS 502
+ P + S G+P GY+ V++L E
Sbjct: 404 -EDRPTRLGSPGVPMYGYN------------------VKLLNEV---------------- 428
Query: 503 VEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKF-PGYYDTMDA 561
G C P+E G +V++ PLPPG M T++ RF+K Y++ F Y T D
Sbjct: 429 --------TGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDW 480
Query: 562 GYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFC 621
G D +GY ++ R DDVINVAGHRL T +E+ + SHP V + AV+GV + KG++
Sbjct: 481 GIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVA 540
Query: 622 LYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKEL 681
+ K D + LE KE+
Sbjct: 541 FVVPK----DSDSLADREARLALE---------------------------------KEI 563
Query: 682 KELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMA 721
LV +G +A V+ LP+TRSGK R++I +A
Sbjct: 564 MALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQAIA 603
|
Length = 629 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 565 bits (1458), Expect = 0.0
Identities = 255/687 (37%), Positives = 354/687 (51%), Gaps = 110/687 (16%)
Query: 32 YRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDRHVERGM 91
Y++SIE PE FW + W K WD++LD S+ PF KWFVGG++NA YN +DRH++ G
Sbjct: 1 YKESIEDPEEFWAEQAEELDWFKPWDKVLDWSNPPFAKWFVGGKLNASYNCLDRHLKAGR 60
Query: 92 AKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSM 151
KVA+I + R +TY EL +V A L ++GV GDRV IYMP+IPE ++M
Sbjct: 61 GNKVAIIWEGEPGDESRTITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAM 120
Query: 152 LATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEIS 211
LA R+GAIHSVVF GF+A L R+ AK K++I A G KV+ K I++EALE
Sbjct: 121 LACARIGAIHSVVFAGFSAEALADRINDAKSKLLITADGGYRGGKVIPLKEIVDEALEK- 179
Query: 212 SCKPDYCIIFQRRCVEEAELTPGYDILWDDALA-QRLSHRCVPVEANDPLYILYTSGTTG 270
+ I+ +R E + G D+ W D +A P++A DPL+ILYTSG+TG
Sbjct: 180 CPSVEKVIVV-KRTGGEVPMVEGRDVWWHDLMAKASPYCEPEPMDAEDPLFILYTSGSTG 238
Query: 271 KPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYIC 330
K PKG++ GG++ A T ++++ DDV+W +D+GW+ GHSYI
Sbjct: 239 K------------PKGVVHTTGGYLVYAATTFKYVFDIHPDDVYWCTADIGWITGHSYIV 286
Query: 331 YGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQ 390
YGPLA G T+VMYEG PD PDP +++ ++ +KV +TAPTA+R++ R + +
Sbjct: 287 YGPLANGATTVMYEGAPD-YPDPGRWWEIVEKYKVTIFYTAPTAIRMLMRFGDEWP--KK 343
Query: 391 YSTDSLRYLFVAGEHCDHETKNWAEKSF---NVTMLNHWWQTETGHSITAHCLGYQHDTV 447
+ SLR L GE + E W + +++ WWQTETG + G
Sbjct: 344 HDLSSLRLLGSVGEPINPEAWMWYYEVIGKERCPIVDTWWQTETGGHMITPLPGA-TPLK 402
Query: 448 PPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRI 507
P S PFPG VE I
Sbjct: 403 PG--SATRPFPG-------------------------------------------VEPAI 417
Query: 508 IRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDEN 567
+ +G+E E G +V+K P PG + T+Y +R++K YF+KFPGYY T D DE+
Sbjct: 418 VDEEGNEVEGGVEGYLVIKRPW-PGMLRTIYGDHERYVKTYFSKFPGYYFTGDGARRDED 476
Query: 568 GYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKR 627
GY ++ R DDVINV+GHRL T+ +E ++SHP V + AV+G P+ KGE +
Sbjct: 477 GYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDEVKGEAIYAF----- 531
Query: 628 IPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVRE 687
V +K S +E+ KELK+ VR+
Sbjct: 532 -----------------------------VTLKDGVEPS--------DELRKELKKHVRK 554
Query: 688 AIGPIAAFKLSTSVTGLPRTRSGKTAR 714
IGPIA V GLP+TRSGK R
Sbjct: 555 EIGPIATPDEIIFVPGLPKTRSGKIMR 581
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 536 bits (1383), Expect = 0.0
Identities = 253/707 (35%), Positives = 363/707 (51%), Gaps = 112/707 (15%)
Query: 24 QNDKYYDAYRKSIEAPESFWTDVGN-MATWSKKWDRILDNSDQPFTKWFVGGEINACYNA 82
++Y + Y +SIE P+ FW + + W K + ++LD S PF KWFVGGE+N YN
Sbjct: 3 NLEQYKELYEESIEDPDKFWAKLARELLDWFKPFTKVLDWSFPPFYKWFVGGELNVSYNC 62
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
+DRH+E KVA+I + +RK+TY EL +V A L ++GV GDRV IYMP
Sbjct: 63 VDRHLEA-RPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMP 121
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202
+IPEA ++MLA R+GAIHSVVFGGF+A L R+ A K++I A G+ KV+ K
Sbjct: 122 MIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKA 181
Query: 203 ILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALA-QRLSHRCVPVEANDPLY 261
I++EALE ++ ++ RR G D+ W D +A P+++ DPL+
Sbjct: 182 IVDEALEKCPVSVEHVLVV-RRTGNPVPWVEGRDVWWHDLMAKASAYCEPEPMDSEDPLF 240
Query: 262 ILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMG 321
ILYTSG+TGK PKG+L GG++ A TM ++++ D++W +D+G
Sbjct: 241 ILYTSGSTGK------------PKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVG 288
Query: 322 WVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRE 381
W+ GHSYI YGPLA G T+VM+EG P PDP +++ +I HKV +TAPTA+R + R
Sbjct: 289 WITGHSYIVYGPLANGATTVMFEGTPT-YPDPGRFWEIIEKHKVTIFYTAPTAIRALMRL 347
Query: 382 DKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF---NVTMLNHWWQTETGHSITAH 438
+ ++ SLR L GE + E W K +++ WWQTETG +
Sbjct: 348 GDE--WVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITP 405
Query: 439 CLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNAT 498
G T P S LPF G
Sbjct: 406 LPGAT-PTKPG--SATLPFFG--------------------------------------- 423
Query: 499 HFTSVEVRIIRNDGSECE-PHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYD 557
+E ++ +G+ E P E G +V+K P PG + T+Y +RF+ YF+ FPGYY
Sbjct: 424 ----IEPAVVDEEGNPVEGPGEGGYLVIKQPW-PGMLRTIYGDHERFVDTYFSPFPGYYF 478
Query: 558 TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
T D D++GYI++T R DDVINV+GHRL T+ +E ++SHP V + AV+G+P+ KG+
Sbjct: 479 TGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQ 538
Query: 618 IPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEI 677
+ V +K D+E+
Sbjct: 539 AIYAF----------------------------------VTLKDGYEP--------DDEL 556
Query: 678 GKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNK 724
KEL++ VR+ IGPIA V GLP+TRSGK R+ + +A +
Sbjct: 557 RKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGE 603
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 527 bits (1360), Expect = e-179
Identities = 246/706 (34%), Positives = 353/706 (50%), Gaps = 114/706 (16%)
Query: 25 NDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAID 84
++Y Y++S+E PE FW + W K +D +LD + PF KWF GE+N YN +D
Sbjct: 16 MEQYKALYQESVEDPEGFWAEQAKRLDWFKPFDTVLD-WNAPFIKWFEDGELNVSYNCLD 74
Query: 85 RHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLI 144
RH++ KVA+I + RK+TY EL +V A +L ++GV GDRV IYMP+I
Sbjct: 75 RHLKTR-GDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMI 133
Query: 145 PEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTIL 204
PEA V+MLA R+GA+HSVVFGGF+A L R+ A K++I A GV K + K +
Sbjct: 134 PEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANV 193
Query: 205 NEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLS-HRCVPVEANDPLYIL 263
+EAL + I+ RR + + G D+ W + +A P++A DPL+IL
Sbjct: 194 DEALANCPSV-EKVIVV-RRTGGDVDWVEGRDLWWHELVAGASDECEPEPMDAEDPLFIL 251
Query: 264 YTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWV 323
YTSG+TGK PKG+L GG++ A TM +++ DV+W +D+GWV
Sbjct: 252 YTSGSTGK------------PKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWV 299
Query: 324 VGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDK 383
GHSYI YGPLA G T++M+EG P+ PDP +++ VI HKV +TAPTA+R + +E
Sbjct: 300 TGHSYIVYGPLANGATTLMFEGVPN-YPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGD 358
Query: 384 DSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF---NVTMLNHWWQTETG-HSITAHC 439
+ +Y SLR L GE + E W K +++ WWQTETG IT
Sbjct: 359 E--HPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITP-- 414
Query: 440 LGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATH 499
L P S P PG
Sbjct: 415 LPGATPLKPG--SATRPLPG---------------------------------------- 432
Query: 500 FTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTM 559
++ ++ +G+ E E G +V+K P PG M T+Y +RF+K YF+ F G Y T
Sbjct: 433 ---IQPAVVDEEGNPLEGGEGGNLVIKDPW-PGMMRTIYGDHERFVKTYFSTFKGMYFTG 488
Query: 560 DAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIP 619
D DE+GY ++T R DDV+NV+GHRL T+ +E +++HP V + AV+G P+ KG+
Sbjct: 489 DGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGI 548
Query: 620 FCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGK 679
+ ++ L P +E+ K
Sbjct: 549 YA-FV--------------------------------TLKGGEEP---------SDELRK 566
Query: 680 ELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKP 725
EL+ VR+ IGPIA + GLP+TRSGK R+ + +A +
Sbjct: 567 ELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEGEE 612
|
Length = 637 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 485 bits (1251), Expect = e-163
Identities = 255/704 (36%), Positives = 371/704 (52%), Gaps = 104/704 (14%)
Query: 26 DKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDR 85
+Y + Y++SIE PE+FW + W RILD S+ PF +WF GG N C+NA+DR
Sbjct: 1 MRYEEFYQRSIEQPEAFWAEQARRIDWQTPPQRILDYSNPPFARWFAGGRTNLCHNALDR 60
Query: 86 HVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIP 145
H++ +++AL+ S T R +TY +L +V++ A +L A+GV GDRVLIYMP+I
Sbjct: 61 HLDE-RGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIA 119
Query: 146 EAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILN 205
EA+ +MLA R+GAIHSVVFGGFA+ L R++ A PK+I++A G+ KV+ YK +L+
Sbjct: 120 EAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLD 179
Query: 206 EALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPV---EANDPLYI 262
A+ + P + ++ R + L PG D+ + AL + VPV E+N+P YI
Sbjct: 180 AAIAEAQHPPPHVLLVDRG-LAPMRLIPGRDVDY-AALRTQHEDAQVPVEWLESNEPSYI 237
Query: 263 LYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGW 322
LYTSGTTGK PKG+ R VGG+ LA +M I+ + V ++ASD+GW
Sbjct: 238 LYTSGTTGK------------PKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGW 285
Query: 323 VVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRED 382
VVGHSYI Y PL AG +V+YEG P PDP ++ ++ + V +F+APTA+RV++++
Sbjct: 286 VVGHSYIVYAPLLAGAATVLYEGLPTN-PDPGVWWSIVERYGVRTMFSAPTAIRVLKKQ- 343
Query: 383 KDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGY 442
D+ ++ SL +LF+AGE D T +W +++++WQTETG + A G
Sbjct: 344 -DAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPGL 402
Query: 443 QHDTVPPKY-STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFT 501
D P K S GLP GY +R+L E AT
Sbjct: 403 --DLKPVKLGSPGLPMYGYH------------------LRVLDE-----------AT--- 428
Query: 502 SVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPG-YYDTMD 560
G C P+E G + V PLPPG +ST++ RF+K Y++ F Y + D
Sbjct: 429 ----------GRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFD 478
Query: 561 AGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPF 620
G DE+GY ++ R DDVINVAGHRL T +E+ V SHP V + AV+GV + KG++
Sbjct: 479 WGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVA- 537
Query: 621 CLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKE 680
+ F+ L + P + +
Sbjct: 538 ------------VVFAILKESDSAG--------------DAHDPHA----------VETG 561
Query: 681 LKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNK 724
+ + V +G +A V LP+TRSGK R+SI +A +
Sbjct: 562 MMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALAEGR 605
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 477 bits (1230), Expect = e-162
Identities = 192/647 (29%), Positives = 284/647 (43%), Gaps = 135/647 (20%)
Query: 69 KWFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAA 128
KWF GG +N NA+DRH+E A+I D R++TY +L+ +V+ LA +L
Sbjct: 1 KWFEGGTLNLALNALDRHLEADRPDDTAIIFDGEDGLF-RELTYGDLRREVARLANALKD 59
Query: 129 IGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAA 188
+G GDRV IYMP PEA++++LAT R+GAI +VV G +A + R+ PKV+IA
Sbjct: 60 LGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIAD 119
Query: 189 SCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALA-QRL 247
K + + L ++ R + +D+A+
Sbjct: 120 DGTFRNGKEIALLEDADAVLSS-------VVVVPRL-----------GLWYDEAVEKASE 161
Query: 248 SHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYN 307
P+ A+DPL++LYTSGTTGK PKGI+ GG++ T +
Sbjct: 162 KFEFEPLPADDPLFLLYTSGTTGK------------PKGIVHSHGGYLVEHRLTAKFHGD 209
Query: 308 MGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNG 367
+ D +W +SD GW+ G Y + PLA+G T+V+Y+G+P P + + + +KV
Sbjct: 210 LLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPF--YSPERLWEALEKYKVTI 267
Query: 368 LFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWW 427
T+PT LR + + G Y SLR L AGE + E W + V +L+ +
Sbjct: 268 FGTSPTFLRRLMKLGL----GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYG 323
Query: 428 QTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESL 487
QTETG + + S+GLP PGY
Sbjct: 324 QTETGM----GFIAGRPPVKNG--SSGLPLPGY--------------------------- 350
Query: 488 RKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKI 547
VR + ++G+ P G +VV+LP PG T + P+R+ +
Sbjct: 351 ----------------AVRRVDDEGNPVPPGV-GELVVRLPW-PGMALTYWNDPERYKEA 392
Query: 548 YFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAV 607
Y F +Y T D DE+GY ++ R DDVI V+G R+ +E V+L+HP V + AV
Sbjct: 393 Y---FGRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAV 449
Query: 608 IGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISS 667
+GVP+P KG+I VL P
Sbjct: 450 VGVPDPGKGQIVLAFV---------------------------------VLAAGVEP--- 473
Query: 668 IYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTAR 714
E+ +E++ V IGP A + V LP+T SGK R
Sbjct: 474 -------NELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQR 513
|
Length = 528 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 351 bits (901), Expect = e-111
Identities = 233/729 (31%), Positives = 344/729 (47%), Gaps = 135/729 (18%)
Query: 9 SLDFSGNKINECTSNQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWD------RILDN 62
S DFS + +S Q +Y + Y++S++ P FW+D+ + W +KW+ LD
Sbjct: 17 SKDFSAQAL--VSSPQ--QYMEMYKRSVDDPAGFWSDIASQFYWKQKWEGDEVCSENLDV 72
Query: 63 SDQPFT-KWFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSL 121
P + +WF GG+ N CYN +DR+VE G K+A+ + +TY+EL ++V
Sbjct: 73 RKGPISIEWFKGGKTNICYNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQ 132
Query: 122 LAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAK 181
LA L +GV GD V+IY+P++ E ++MLA R+GA+HSVVF GF+A L R+ K
Sbjct: 133 LANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCK 192
Query: 182 PKVIIAASCGVEPNKVVRYKTILNEALEISS---CKPDYCIIFQRRCV---EEAELTPGY 235
PKV+I + K + K I++ AL+ S+ C+ ++ + E+ + G
Sbjct: 193 PKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEGR 252
Query: 236 DILWDDALAQRLSHRCVP-VEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGH 294
D+ W D + + V V+A DPL++LYTSG+TGK PKG+L GG+
Sbjct: 253 DVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGK------------PKGVLHTTGGY 300
Query: 295 IATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPS 354
+ A T ++ DV+W +D GW+ GHSY+ YGP+ G T +++EG P+ PD
Sbjct: 301 MVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPN-YPDSG 359
Query: 355 QYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWA 414
+ + ++ +KV +TAPT +R + R+ + ++S SLR L GE + W
Sbjct: 360 RCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYV--TRHSRKSLRVLGSVGEPINPSAWRWF 417
Query: 415 EKSFNVT------MLNHWWQTET-GHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNI 467
FNV + + WWQTET G IT P PG
Sbjct: 418 ---FNVVGDSRCPISDTWWQTETGGFMIT-------------------PLPG-------- 447
Query: 468 VMLNWLDGRAHCVRILPESLRKNVPKGQNATH-FTSVEVRIIRNDGSECEPHELGRIVVK 526
W P+ K +AT F V+ I+ G E E G + VK
Sbjct: 448 ---AW-----------PQ-------KPGSATFPFFGVQPVIVDEKGKEIEGECSGYLCVK 486
Query: 527 LPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHR 586
PG TLY +R+ YF F GYY + D D++GY ++T R DDVINV+GHR
Sbjct: 487 KSW-PGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHR 545
Query: 587 LSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLER 646
+ T+ +E ++SHP + AV+G+ KG+ G+ F L
Sbjct: 546 IGTAEVESALVSHPQCAEAAVVGIEHEVKGQ-------------------GIYAFVTL-- 584
Query: 647 PTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPR 706
V PY EE+ K L VR IG AA GLP+
Sbjct: 585 ----------VEGVPY-----------SEELRKSLILTVRNQIGAFAAPDKIHWAPGLPK 623
Query: 707 TRSGKTARK 715
TRSGK R+
Sbjct: 624 TRSGKIMRR 632
|
Length = 666 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 320 bits (822), Expect = 1e-99
Identities = 198/713 (27%), Positives = 323/713 (45%), Gaps = 128/713 (17%)
Query: 28 YYDAYRKSIEAPESFWTDVGNMATWSKKWDRILD---NSDQPFTKWFVGGEINACYNAID 84
Y + + PESFW +V A WD++ D + D+ + WF GGE+N CYN +D
Sbjct: 10 YENDSNYANSNPESFWDEV---AKKYVHWDKMYDKVYSGDEIYPDWFKGGELNTCYNVLD 66
Query: 85 RHVERGMAK-KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPL 143
HV+ + + + ALI++ P K K+TY +L E+V + L + +S D VLIYM
Sbjct: 67 IHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMAN 126
Query: 144 IPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTI 203
E +++ML+ R+GA H V+F G++ + L R+E PK+II + G+ ++++ +
Sbjct: 127 TLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPN 186
Query: 204 LNEALEISSCKPDYCII-FQRRCVEEAELTPGYDIL-------WDDALA------QRLSH 249
L EA+E+S+ KP I F+ E++L I W D + Q +
Sbjct: 187 LKEAIELSTFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFY 246
Query: 250 RCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMG 309
VPVE++ PLYILYTSGTTG K ++R G H+ L + I
Sbjct: 247 EYVPVESSHPLYILYTSGTTGN------------SKAVVRSNGPHLVGLKYYWRSIIEKD 294
Query: 310 QDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEG---KPDRTPDPSQYYRVIHNHKVN 366
V ++ S +GWV H ++ YG L+ G T VM+EG K D + I HKV
Sbjct: 295 IPTVVFSHSSIGWVSFHGFL-YGSLSLGNTFVMFEGGIIKNKHIED--DLWNTIEKHKVT 351
Query: 367 GLFTAPTALRVIRREDKDST-LGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNH 425
T P +R + + D ++T + ++Y +L+ ++ GE + + E +
Sbjct: 352 HTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRG 411
Query: 426 WWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPE 485
+ QTE G + Y H + P +TG+P
Sbjct: 412 YGQTEIG---ITYLYCYGHINI-PYNATGVPSI--------------------------- 440
Query: 486 SLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFM 545
++ I+ DG E +E+G + KLP+PP +T YK ++F
Sbjct: 441 ----------------FIKPSILSEDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFK 484
Query: 546 KIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDT 605
++ F+KFPGYY++ D G+ DENGY + +R DD I ++G+++ + +E +L HP V +
Sbjct: 485 QL-FSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLEC 543
Query: 606 AVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLI-KPYGP 664
IG+ +P PI +L+ K
Sbjct: 544 CSIGIYDPD-----------------------------------CYNVPIGLLVLKQDQS 568
Query: 665 ISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSI 717
SI ++ E+ ++ + I +A + V LP+T++GK R+ I
Sbjct: 569 NQSI----DLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQII 617
|
Length = 647 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 287 bits (736), Expect = 8e-90
Identities = 128/498 (25%), Positives = 196/498 (39%), Gaps = 87/498 (17%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
TY EL E+ + LA +L A+GV GDRV I +P PE +V++LA ++ GA + + A
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 171 RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAE 230
L LE ++ KV+I + V K ++ AL I +
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGD----------------D 104
Query: 231 LTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRP 290
+ + PV+ +D YI+YTSGTTGK PKG++
Sbjct: 105 GEGLDLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGK------------PKGVMLT 152
Query: 291 VGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRT 350
+A A D V G + +GPL AG T V+
Sbjct: 153 HRNLLALAAGLAERFGLTPGDRVLLLLP--LHFDGSVWEIFGPLLAGGTLVLVPKFTL-- 208
Query: 351 PDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET 410
DP++ +I +KV L+ PT LR++ + ++ +Y SLR + GE E
Sbjct: 209 -DPARLLDLIEKYKVTVLYGVPTLLRLLLKAPEE----KKYDLSSLRLVLSGGEPLPPEL 263
Query: 411 KNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVM 469
+ F V ++N + TET TA+ G D S G P PG
Sbjct: 264 LRRLRERFGGVPLVNGYGPTETTVVATANLPG---DPEVKPGSIGRPLPG---------- 310
Query: 470 LNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPL 529
VEV+++ +G P E+G + ++
Sbjct: 311 ---------------------------------VEVKVLDEEGEPVPPGEVGELCIRG-- 335
Query: 530 PPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLST 589
PG P+ + + G Y T D G +DE+GY+ + R DD + + G R+
Sbjct: 336 -PGVARGYLNDPELTAERFVEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIRGERIEP 394
Query: 590 SALEDVVLSHPDVGDTAV 607
+E V+L HP V + AV
Sbjct: 395 GEIEAVLLEHPGVAEAAV 412
|
Length = 412 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 277 bits (712), Expect = 2e-84
Identities = 181/656 (27%), Positives = 281/656 (42%), Gaps = 150/656 (22%)
Query: 70 WFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAI 129
W G++N Y AIDRH + G KVAL + K TY EL+E + A L +
Sbjct: 36 WLETGKVNIAYEAIDRHADGGRKDKVALRYLDA--SRKEKYTYKELKELSNKFANVLKEL 93
Query: 130 GVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAAS 189
GV GDRV I+MP IPE ++L ++ GAI +F F + RLE ++ KV+I +
Sbjct: 94 GVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLIT-T 152
Query: 190 CGVEPNKVVR----YKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWD-DALA 244
+ K K +L E+ E PG D +AL
Sbjct: 153 PALLERKPADDLPSLKHVL-------------------LVGEDVEEGPGT---LDFNALM 190
Query: 245 QRLSHR--CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGIL---RPVGGHIATLA 299
++ S + D + YTSG+TGKP KG+L + H T
Sbjct: 191 EQASDEFDIEWTDREDGAILHYTSGSTGKP------------KGVLHVHNAMLQHYQTGK 238
Query: 300 WTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRV 359
+ + ++ +DDV+W +D GWV G SY + P G T+V+ G+ P ++YR+
Sbjct: 239 YVL----DLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGR----FSPERWYRI 290
Query: 360 IHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFN 419
+ ++KV +TAPTA+R++ D L +Y SLR++ GE + E W K F
Sbjct: 291 LEDYKVTVWYTAPTAIRMLMGAGDD--LVKKYDLSSLRHILSVGEPLNPEVVRWGMKVFG 348
Query: 420 VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHC 479
+ + ++WW TETG + A+ Y + P S G P PG
Sbjct: 349 LPIHDNWWMTETGGIMIAN---YPAMDIKPG-SMGKPLPG-------------------- 384
Query: 480 VRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYK 539
+E I+ + G+E P+ +G + +K P M ++
Sbjct: 385 -----------------------IEAAIVDDQGNELPPNRMGNLAIKKGW-PSMMRGIWN 420
Query: 540 APQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSH 599
P+++ YF +Y + D+ Y DE+GY + R DDVI +G R+ +E ++ H
Sbjct: 421 NPEKYES-YF--AGDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEH 477
Query: 600 PDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLI 659
P V + VIG P+P +GEI IK + L + G+
Sbjct: 478 PAVAEAGVIGKPDPVRGEI-----IKAFVAL-RPGYEP---------------------- 509
Query: 660 KPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARK 715
EE+ +E++ V++ +G AA + LP+TRSGK R+
Sbjct: 510 --------------SEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRSGKIMRR 551
|
Length = 570 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 270 bits (693), Expect = 1e-82
Identities = 174/624 (27%), Positives = 254/624 (40%), Gaps = 165/624 (26%)
Query: 106 SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVF 165
S+R TY+EL +V+ LA LAA+G+ GDRV IYMP+IPEA+V++LA ++GAI +F
Sbjct: 4 SVRTWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIF 63
Query: 166 GGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRC 225
GF + RL+ A+ KV+I A F RR
Sbjct: 64 SGFGPDAVATRLQDAEAKVLITAD------------------------------GFLRR- 92
Query: 226 VEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPK 285
+ V ++ +DP I+YTSGTTGK PK
Sbjct: 93 -----------------------GKRVDLK-DDPAMIIYTSGTTGK------------PK 116
Query: 286 GILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEG 345
G + G A + +++ D +DMGW++G ++ G L G T V+YEG
Sbjct: 117 GTVHTHAGFPVKAAKDIGFCFDLKPGDRLLWITDMGWMMG-PWLVLGGLLLGATIVLYEG 175
Query: 346 KPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEH 405
PD PDP + +R++ HKV L +PT +R +R + SLR L GE
Sbjct: 176 APDY-PDPDRLWRIVERHKVTHLGLSPTLIRALR--AHGDAPVEGHDLSSLRVLGSTGEP 232
Query: 406 CDHETKNWAEKSF---NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDG 462
D E+ W + ++N+ TE I LG P
Sbjct: 233 WDPESWLWLFERVGGGRAPIINYSGGTEISGGI----LG--------------NVP---- 270
Query: 463 KYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGR 522
I P S P G +A ++ DG E+G
Sbjct: 271 ----------------IRPIKPCSFNGPSP-GMDAD--------VVDEDGRPVRG-EVGE 304
Query: 523 IVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINV 582
+VV+ P PG ++ P+R+++ Y+++FPG + D DE+GY Y+ R DD I V
Sbjct: 305 LVVRAP-WPGMTRGFWRDPERYLETYWSRFPGVWVHGDWALVDEDGYWYILGRSDDTIKV 363
Query: 583 AGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFG 642
AG R+ + +E V+ SHP V + A IGVP+P KGE C
Sbjct: 364 AGKRVGPAEIESVLNSHPAVAEAAAIGVPDPVKGEAIVCFV------------------- 404
Query: 643 KLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVT 702
VL P + EL + V +A+G + V+
Sbjct: 405 --------------VLKPGVTP---------SAALEAELADHVGDALGKPFRPREVHFVS 441
Query: 703 GLPRTRSGKTARKSIVDMARNKPL 726
LP+TR+GK R+ I +P
Sbjct: 442 DLPKTRNGKIMRRVIRAAYLGQPP 465
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 236 bits (603), Expect = 2e-71
Identities = 115/454 (25%), Positives = 165/454 (36%), Gaps = 118/454 (25%)
Query: 258 DPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317
DP +ILYTSGTTGKP KG++ +A I + DV +
Sbjct: 1 DPAFILYTSGTTGKP------------KGVVLSHRNLLANAQALAQAIGL-TEGDVLLSV 47
Query: 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRV 377
+ VVG G L AG T V+YEG P P + +I ++V LF PT
Sbjct: 48 LPLFHVVGGGSGLLGALLAGGTVVLYEGF----PFPLSFLELIEQYRVTVLFGVPTLYDA 103
Query: 378 IRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITA 437
+ + +D Y SLR L GE E E+ +L + TET +
Sbjct: 104 LAKAAEDRG----YDLSSLRLLISGGEPLSPELLERFEERPGAPILEGYGLTETSVVTST 159
Query: 438 HCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNA 497
+ + G P PG
Sbjct: 160 -NPDSELKKPG---TVGRPVPG-------------------------------------- 177
Query: 498 THFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYD 557
VEVR++ +G P E+G +VV+ P M + G+Y
Sbjct: 178 -----VEVRVVDEEGKPLPPGEVGELVVR---GPWVMKGYWN--NPPETTAAATEDGWYR 227
Query: 558 TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
T D GY DE GY+Y+T R D+I V G + + +E V+L HP V + AV+GVP+ +GE
Sbjct: 228 TGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGE 287
Query: 618 IPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEI 677
++ VL +P +
Sbjct: 288 RI-VAFV--------------------------------VL-RPGADALA---------- 303
Query: 678 GKELKELVREAIGPIAAFKLSTSVTGLPRTRSGK 711
+ELK +RE + P ++ V LP+T SGK
Sbjct: 304 -EELKAHLRERLAPYKVPRVIEFVDELPKTASGK 336
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 2e-60
Identities = 125/495 (25%), Positives = 187/495 (37%), Gaps = 126/495 (25%)
Query: 233 PGYDILWDDALAQRLSH---RCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILR 289
PG L + RL R + A+DP + +TSGTTG PK +L
Sbjct: 54 PGTTQLGPKDIRYRLERAGARAIVTSADDPALLYFTSGTTG------------LPKMVLH 101
Query: 290 PVG---GHIATLA-WTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEG 345
GH+ T A W ++ DD+ WT +D GW G + P G +Y G
Sbjct: 102 THSYPLGHLVTGAYWL-----DLRPDDLHWTIADPGWAKGAWSSLFAPWLLGAAVFVYHG 156
Query: 346 KPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEH 405
R D + ++ + V PTA R++ ++D + Y LR++ AGE
Sbjct: 157 ---RRFDAERTLELLERYGVTTFCAPPTAYRMLLQQD-----LSSYDFSHLRHVVSAGEP 208
Query: 406 CDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYV 465
+ E +W + + + + + QTETG + S G P PGY
Sbjct: 209 LNPEVIDWWRAATGLPIRDGYGQTETGLLVANF-----PGMEVKPGSMGRPAPGYR---- 259
Query: 466 NIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVV 525
V II ++G+E P E G I V
Sbjct: 260 ---------------------------------------VAIIDDEGNELPPGEEGDIAV 280
Query: 526 KL-PLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAG 584
++ P PPG K P++ T +Y T D DE+GY + R DDVI +G
Sbjct: 281 RVKPRPPGLFRGYLKDPEKTEA---TIRGDWYLTGDRAIKDEDGYFWFVGRADDVIKSSG 337
Query: 585 HRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKL 644
+R+ +E ++ HP V + AV+G P+P +GE+ +K +
Sbjct: 338 YRIGPFEVESALIEHPAVAEAAVVGSPDPVRGEV-----VKAFV---------------- 376
Query: 645 ERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGL 704
VL Y P EE+ KEL+E V++ P + V L
Sbjct: 377 ------------VLAPGYQP---------SEELAKELQEHVKKRTAPYKYPREIEFVEEL 415
Query: 705 PRTRSGKTARKSIVD 719
P+T SGK R +
Sbjct: 416 PKTVSGKIRRVELRA 430
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 208 bits (530), Expect = 9e-60
Identities = 165/605 (27%), Positives = 237/605 (39%), Gaps = 172/605 (28%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
+YAEL+EQ + +A LA +GV GDRV +P PE +V++LAT R+GAI+ +F F
Sbjct: 2 SYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFGP 61
Query: 171 RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAE 230
+ + RL H+ KV++ N R K
Sbjct: 62 KAIEYRLGHSGAKVVVT-------NAANRGK----------------------------- 85
Query: 231 LTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRP 290
L DD AQ +YTSGTTG PKG+ P
Sbjct: 86 -------LDDDLFAQ-----------------MYTSGTTGL------------PKGVPVP 109
Query: 291 VGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRT 350
+ A A+ M ++ DDV+W +D GW G Y GPLA GIT+V EG
Sbjct: 110 LNALAAFYAY-MRYAIDLRDDDVFWNIADPGWAYGLYYAITGPLAMGITTVFLEG----G 164
Query: 351 PDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET 410
Y V+ V +PTA R++ D+ A LR AGE + E
Sbjct: 165 FTAENTYDVLERLGVTNFAGSPTAYRMLMAAGADA---AARIKLKLRVASSAGEPLNPEV 221
Query: 411 KNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVML 470
W + + VT+ +H+ QTETG + H H+ V S GLP PGY I +L
Sbjct: 222 VRWFQANLGVTIHDHYGQTETGMPVGNH-HALAHE-VRAG-SMGLPLPGYR-----IAVL 273
Query: 471 NWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLP-L 529
+ +DG E G++ + +
Sbjct: 274 D--------------------------------------DDGQPLADGEPGQLAIDVASS 295
Query: 530 PPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLST 589
P S + P+ K +Y T D DE+GY + R DDVI AG+R+
Sbjct: 296 PLLWFSGYWDDPE---KTAELIAGRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGP 352
Query: 590 SALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTS 649
+E +L HP V + AV+GVP+P +GEI +K + L K G++G
Sbjct: 353 FDVESALLEHPAVAEAAVVGVPDPLRGEI-----VKAFVVL-KEGYAG------------ 394
Query: 650 LLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRS 709
+E+ +EL+ V++ + A + V LP+T S
Sbjct: 395 ------------------------SDELAEELQLFVKKRLSAHAYPREVEFVPALPKTPS 430
Query: 710 GKTAR 714
GK R
Sbjct: 431 GKIQR 435
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 2e-59
Identities = 158/658 (24%), Positives = 244/658 (37%), Gaps = 159/658 (24%)
Query: 85 RHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLI 144
R + ALI ++TY EL + + LA +L A+GV GDRV I +P
Sbjct: 18 ERAARRNPDRPALIFLGRG----GRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNS 73
Query: 145 PEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTIL 204
PE +++ LA +R GA+ + REL L A KV+I ++ + V
Sbjct: 74 PEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVA----- 128
Query: 205 NEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRC--VPVEANDPLYI 262
EAL + + + I + A+ PV+ +D ++
Sbjct: 129 -EALPVV-----------LVVLLVGDADDRLPITLEALAAEGPGPDADARPVDPDDLAFL 176
Query: 263 LYTSGTTGKPQGCSELRSEDQPKGIL---RPVGGHIATLAWTMSVIYNMGQDDVWWTAS- 318
LYTSGTTG PKG++ R + + A +A + + DDV +
Sbjct: 177 LYTSGTTGL------------PKGVVLTHRNLLANAAGIAAALGG--GLTPDDVVLSWLP 222
Query: 319 ---DMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTAL 375
G +VG PL G T V+ +P DP + +I +KV L PT L
Sbjct: 223 LFHIFGLIVGLL----APLLGGGTLVLLSPEP---FDPEEVLWLIEKYKVTVLSGVPTFL 275
Query: 376 -RVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWWQTETGH 433
++ +KD + SLR + G E + + E+ + +L + TET
Sbjct: 276 RELLDNPEKD----DDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSP 331
Query: 434 SITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPK 493
+T P S G P PG
Sbjct: 332 VVTI-NPPDDLLAKPG--SVGRPLPG---------------------------------- 354
Query: 494 GQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLP-LPPGTMSTLYKAPQRFMKIYFTKF 552
VEVRI+ DG E P E+G I V+ P + G + P+ + +
Sbjct: 355 ---------VEVRIVDPDGGEVLPGEVGEIWVRGPNVMKGY----WNRPEATAEAFDE-- 399
Query: 553 PGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPE 612
G+ T D GY DE+GY+Y+ R D+I G + +E V+ HP V + AV+GVP+
Sbjct: 400 DGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPD 459
Query: 613 PTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTR 672
GE + + D
Sbjct: 460 ERWGERV-VAVVVLKPGGD----------------------------------------- 477
Query: 673 SDEEIGKELKELVREAIGPIAAFKLSTS---VTGLPRTRSGKTARKSIVDMARNKPLR 727
E +EL+ +R+ +A +K+ V LPRT SGK R+++ + R +P
Sbjct: 478 -AELTAEELRAFLRKR---LALYKVPRIVVFVDELPRTASGKIDRRALREEYRAEPRL 531
|
Length = 534 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 4e-58
Identities = 138/479 (28%), Positives = 194/479 (40%), Gaps = 127/479 (26%)
Query: 245 QRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGIL---RPVGGHIATLAWT 301
L R + DP + +TSGTTGKP KG+L R V H AT +
Sbjct: 80 PELYERT---DPEDPALLHFTSGTTGKP------------KGVLHVHRAVVAHYATARYV 124
Query: 302 MSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIH 361
+ ++ DDV+W +D GWV G SY PL G+T V+ EG+ D ++Y ++
Sbjct: 125 L----DLRPDDVYWCTADPGWVTGTSYGIIAPLLNGVTLVVDEGEFD----AERWYGILE 176
Query: 362 NHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVT 421
KV +TAPTALR++ R L A+Y SLR++ GE + E W EK +
Sbjct: 177 EEKVTVWYTAPTALRMLMRAG--PELAARYDLSSLRHIASVGEPLNPEVVVWGEKVLGMP 234
Query: 422 MLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVR 481
+ + WWQTETG + A+ G V P S G P PG
Sbjct: 235 IHDTWWQTETGAIMIANYPGIP---VKPG-SMGRPLPG---------------------- 268
Query: 482 ILPESLRKNVPKGQNATHFTSVEVRIIRNDGSE----CEPHELGRIVVKLPLPPGTMSTL 537
+E +I DG P ++G + +K P P
Sbjct: 269 ---------------------IEAAVIERDGDGLTPVTGPGQVGELALK-PGWPSMFRGY 306
Query: 538 YKAPQRFMKIYFTKFP-GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVV 596
+R+ F G+Y T D Y DE+GY + R DDVI AGH + +E +
Sbjct: 307 LGNEERYAS----SFVDGWYLTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGPFEVESAL 362
Query: 597 LSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIR 656
+ HP V + VIG P+P GEI +K + L + GF
Sbjct: 363 MEHPAVAEAGVIGKPDPVAGEI-----VKAFVSL-RPGFEP------------------- 397
Query: 657 VLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARK 715
EE+ +EL R+ +G A + V LP+TRSGK R+
Sbjct: 398 -----------------SEELRRELLTFARQRLGAAVAPREIHFVDNLPKTRSGKIMRR 439
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 2e-43
Identities = 123/495 (24%), Positives = 190/495 (38%), Gaps = 139/495 (28%)
Query: 241 DALAQRLSHR----CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGIL---RPVGG 293
DA+ RL V ++DP ++YTSGTTG PKG L R + G
Sbjct: 68 DAVEHRLRDSGARVLVTDGSDDPAILIYTSGTTG------------PPKGALHGHRVLLG 115
Query: 294 HIAT--LAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGK---PD 348
H+ L + ++ DV+WT +D W+ G + L G+ V Y + P+
Sbjct: 116 HLPGVELYFELA----PRPGDVFWTPADWAWIGGLLDVLLPALYFGVPVVAYRMQRFDPE 171
Query: 349 RTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDH 408
R + ++ + V F PTAL+++RR + A+Y LR + GE
Sbjct: 172 RA------FALMRRYGVTNAFLPPTALKMMRRVGSER---ARYDLR-LRAVASGGESLGE 221
Query: 409 ETKNWAEKSFNVTMLNHWWQTETGHSITAHC--LGYQHDTVPPKY-STGLPFPGYDGKYV 465
E WA +T+ + QTE + + +C LG P + S G P PG+
Sbjct: 222 ELLEWARDELGLTVNEFYGQTEA-NLVVGNCAALG------PARPGSMGKPVPGH----- 269
Query: 466 NIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVV 525
EV ++ + G P E+G I V
Sbjct: 270 --------------------------------------EVAVVDDAGRPVPPGEVGEIAV 291
Query: 526 KLPLPPGTMSTLYKAPQRFMKIYFTKFPG-YYDTMDAGYYDENGYIYVTARDDDVINVAG 584
K P P + P+ KF G + T D G D +GY++ R DDVI +G
Sbjct: 292 KRP-DPVMFLGYWNNPEATAA----KFAGDWLLTGDLGRRDADGYLWFKGRADDVIKSSG 346
Query: 585 HRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKL 644
+R+ + +E+ +L HP V + AV+GVP+P +GEI +K + L G
Sbjct: 347 YRIGPAEIEECLLKHPAVLEAAVVGVPDPERGEI-----VKAFVVL-AEGVEP------- 393
Query: 645 ERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGL 704
+E+ EL+ELV+ + + V L
Sbjct: 394 -----------------------------SDELATELQELVKSRLAAHEYPREIEFVDEL 424
Query: 705 PRTRSGKTARKSIVD 719
P T +GK R+ +
Sbjct: 425 PMTTTGKIRRRELRR 439
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 5e-43
Identities = 104/399 (26%), Positives = 162/399 (40%), Gaps = 64/399 (16%)
Query: 28 YYDAYRKSIEAPESFWTDVGNMATW-------SKKWDRILDNSDQPFTKWFVGGEINACY 80
Y+ +R S+E +FW V W SK + +LD P +WF G +N
Sbjct: 8 YHALWRWSVEDLAAFWESV-----WDFFDVIGSKGYVVVLDGDIMPGARWFPGARLNYAE 62
Query: 81 NAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIY 140
N + RH + A+ R++++AEL+ QV+ LA +L +GV GDRV Y
Sbjct: 63 NLL-RHAD---NDPAAIYAAGE-DGERREISWAELRSQVARLAAALRDLGVKPGDRVAGY 117
Query: 141 MPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRY 200
+P +PEA+++MLAT +GAI S F + R +PKV+ A G N
Sbjct: 118 LPNVPEAVIAMLATASIGAIWSSCSPDFGVEAVLDRFGQIEPKVLFAVD-GYVYNG---- 172
Query: 201 KTI--LNEALEISSCKP--------DYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHR 250
K + EI P Y A +LW A +
Sbjct: 173 KEHDRREKIAEIVKGLPSLEAVVVVPYLSS---DAQPAALKFSALTLLWSLAGDRAAPLE 229
Query: 251 CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGG----HIATLAWTMSVIY 306
+ + PL+ILY+SGTTG PK I+ GG H+
Sbjct: 230 FERLPFDHPLWILYSSGTTGL------------PKCIVHGAGGTLLQHLKEHGLHC---- 273
Query: 307 NMGQDDV--WWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHK 364
++ D ++T + GW++ + + L +G T V+Y+G P PDP +R+
Sbjct: 274 DLRPGDRLFYYTTT--GWMMWNWLV--SGLLSGATLVLYDGSPLY-PDPDVLWRLAAKLG 328
Query: 365 VNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAG 403
+ T+ L + + + G + SLR + G
Sbjct: 329 ITIFGTSAKYLDALEKAGIE--PGRTHDLSSLRTILSTG 365
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 2e-42
Identities = 156/651 (23%), Positives = 243/651 (37%), Gaps = 144/651 (22%)
Query: 77 NACYNAIDRHVERGMAK----KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVS 132
N Y+ +D A K+ALI + + T+ +L++ + A A+G+
Sbjct: 17 NFAYDVVDA-----YADEEPDKLALIWCDDDGEE-KIFTFGDLKDYSNKAANFFKALGIG 70
Query: 133 AGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGV 192
GD V++ + E SMLA ++GAI A+++ R+E A K+I+
Sbjct: 71 KGDTVMLTLKRRYEFWFSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIGEDG 130
Query: 193 EPNKV---VRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSH 249
P + + + P+ I F + +
Sbjct: 131 VPEHIDEAAPECGSPTLLVLVGDPVPEGWIDFDKEIENASPDFER-------------PT 177
Query: 250 RCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLA-WTMSVIYNM 308
+D L + +TSGTTG P+ + D P+G HI T W N+
Sbjct: 178 GNDATCNDDILLVYFTSGTTGMPK----MVEHDH----TYPLG-HIVTAKYW-----QNV 223
Query: 309 GQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGL 368
+ + T +D GW YG AG +Y+ DP I + V
Sbjct: 224 KEGGLHLTVADTGWGKAVWGKLYGQWIAGAAVFVYDYD---KFDPKNLLEKIEKYGVTTF 280
Query: 369 FTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQ 428
PT R + +ED ++Y SLRY AGE + E N ++ + ++ + Q
Sbjct: 281 CAPPTIYRFLIKEDL-----SKYDLSSLRYCTTAGEPLNPEVFNTFKEKTGIKLMEGFGQ 335
Query: 429 TETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLR 488
TET +I P S G P PGYD
Sbjct: 336 TETTLTI-----ATFPWMEPKPGSMGKPSPGYD--------------------------- 363
Query: 489 KNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLP--LPPGTMSTLYKAPQRFMK 546
+ II DG CE E G IV++ P G Y+ P+R +
Sbjct: 364 ----------------IDIIDPDGKSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAE 407
Query: 547 IYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTA 606
++ GYY T D + DE+GY++ R DD+I +G+R+ +E ++ HP V + A
Sbjct: 408 VWHD---GYYHTGDTAWMDEDGYLWFVGRADDLIKSSGYRIGPFEVESALIQHPAVLECA 464
Query: 607 VIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPIS 666
V GVP+P +G++ +K I VL K Y P
Sbjct: 465 VTGVPDPIRGQV-----VKATI----------------------------VLTKGYEP-- 489
Query: 667 SIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSI 717
EE+ KEL++ V++ P ++ V LP+T SGK R I
Sbjct: 490 -------SEELKKELQDHVKKVTAPYKYPRIIEFVDELPKTISGKIRRVEI 533
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 1e-40
Identities = 132/543 (24%), Positives = 203/543 (37%), Gaps = 141/543 (25%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAI-HSV-VF 165
R+ TYAEL E+V+ LA +L A+GV GDRV ++ E + + A ++GA+ H + +
Sbjct: 30 RRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIR 89
Query: 166 GGFAARELCARLEHAKPKVIIAAS------CGVEPN-KVVRYKTILNEALEISSCKPDYC 218
E+ L A+ +V++ S + P VR I+
Sbjct: 90 --LKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVR-TVIVEGD----------- 135
Query: 219 IIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVP-VEANDPLYILYTSGTTGKPQGCSE 277
A +++ LA P ++ ND +LYTSGTTG P
Sbjct: 136 --------GPAAPLAPEVGEYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHP----- 182
Query: 278 LRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVV---GHSY---ICY 331
KG+ V H +++V + + D+ V+ H + + Y
Sbjct: 183 -------KGV---VLSHRNLFLHSLAVCAWLK-----LSRDDVYLVIVPMFHVHAWGLPY 227
Query: 332 GPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQY 391
L AG V+ P R DP +I +V F PT +++ + + +
Sbjct: 228 LALMAGAKQVI----PRRF-DPENLLDLIETERVTFFFAVPTIWQMLLKAPRAY--FVDF 280
Query: 392 STDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPK- 450
S SLR + G ++ F + ++ + TET ++ D +P +
Sbjct: 281 S--SLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSV---LPPEDQLPGQW 335
Query: 451 ---YSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRI 507
S G P PG VE RI
Sbjct: 336 TKRRSAGRPLPG-------------------------------------------VEARI 352
Query: 508 IRNDGSECEPH--ELGRIVVKLP--------LPPGTMSTLYKAPQRFMKIYFTKFPGYYD 557
+ +DG E P E+G I+V+ P P T T+ G+
Sbjct: 353 VDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDG--------------GWLH 398
Query: 558 TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
T D GY DE+GY+Y+T R DVI G + LED + HP V + AVIGVP+ GE
Sbjct: 399 TGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGE 458
Query: 618 IPF 620
P
Sbjct: 459 RPV 461
|
Length = 521 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 1e-38
Identities = 117/404 (28%), Positives = 167/404 (41%), Gaps = 75/404 (18%)
Query: 28 YYDAYRKSIEAPESFWTDVGNMATW-------SKKWDRILDNSDQPFTKWFVGGEINACY 80
Y +R S+E E+FW V W S + +L P +WF G +N
Sbjct: 36 YAALWRWSVEDLEAFWQSV-----WDFFGVIGSTPYTVVLAGRRMPGARWFPGARLNYAE 90
Query: 81 NAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIY 140
N + RH + A+I R++++AEL+ QV+ LA +L A+GV GDRV Y
Sbjct: 91 NLL-RH---RRDDRPAIIFRGE-DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAY 145
Query: 141 MPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRY 200
+P IPE +V+MLAT LGAI S F + + R +PKV+IA G RY
Sbjct: 146 LPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVD-G------YRY 198
Query: 201 --KTI--LNEALEISSCKP---DYCIIFQRRCVEEAELTPGYDILWDDALAQR--LSHRC 251
K + E+ + P ++ A PG +LW+D LA
Sbjct: 199 GGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAAALPG-ALLWEDFLAPAEAAELEF 257
Query: 252 VPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGG----HIATLAWTMSVIYN 307
PV + PL+ILY+SGTTG PK I+ GG H+ L +
Sbjct: 258 EPVPFDHPLWILYSSGTTGL------------PKCIVHGHGGILLEHLKELGLHC----D 301
Query: 308 MGQDDV--WWTASDMGW------VVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRV 359
+G D W+T GW V G L G T V+Y+G P PDP+ + +
Sbjct: 302 LGPGDRFFWYTTC--GWMMWNWLVSG--------LLVGATLVLYDGSPFY-PDPNVLWDL 350
Query: 360 IHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAG 403
V T+ L + G + +LR + G
Sbjct: 351 AAEEGVTVFGTSAKYLDACEKA--GLVPGETHDLSALRTIGSTG 392
|
Length = 655 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 1e-37
Identities = 128/533 (24%), Positives = 198/533 (37%), Gaps = 105/533 (19%)
Query: 96 ALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATV 155
ALI + ++T+A+L ++ LA L +G+ GD V + P E L +
Sbjct: 1 ALIDAD----TGTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCL 56
Query: 156 RLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKP 215
G I S + EL +L+ +KPK+I ++ V+ EA P
Sbjct: 57 AAGGIVSAANPSYTPDELAHQLKISKPKLIFCDPDELD---KVK------EAA--KELGP 105
Query: 216 DYCIIFQRRCVEEAELTPGY-DILWDDALAQRLSHRCVPVE--ANDPLYILYTSGTTGKP 272
II ++ A + L + L R P+ +D +LY+SGTTG P
Sbjct: 106 VVRII----VLDSAPDGVLRIEDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLP 161
Query: 273 QGCSELRSEDQPKGILRPVGGHIATL--AWTMSVIYNMGQDDVWWTASDMGWVVG-HSYI 329
+G L ++ IA L +DV T G + +
Sbjct: 162 KGV-MLSHKNI-----------IANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTL 209
Query: 330 CYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPT-ALRVIRREDKDSTLG 388
L G T ++ D + ++I +KV LF P A+ + + D
Sbjct: 210 AS--LLCGATVIIM-----PKFDSETFLKLIEKYKVTSLFLVPPIAVALAKSPLVDK--- 259
Query: 389 AQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNH-WWQTETGHSITAHCLGYQHDTV 447
Y SLR +F E + K F T + + TETG T
Sbjct: 260 --YDLSSLRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETG-PATTLTPP------ 310
Query: 448 PPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRI 507
G PG R++P +VE +I
Sbjct: 311 ------GDEKPG------------------SVGRLVP-----------------NVEAKI 329
Query: 508 IRNDGSEC-EPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDE 566
+ DG + P+E G + VK P M P+ K + G+ T D GY+DE
Sbjct: 330 VDEDGGKSLGPNERGELCVK---GPQIMKGYLNNPEA-TKETIDE-DGWLHTGDIGYFDE 384
Query: 567 NGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIP 619
+G Y+ R ++I G+++ + LE V+L HP V D AVIG+P+ GE+P
Sbjct: 385 DGNFYIVDRKKELIKYKGYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELP 437
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 3e-36
Identities = 141/648 (21%), Positives = 239/648 (36%), Gaps = 155/648 (23%)
Query: 77 NACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDR 136
NA +DRH+ G K+AL +D +TY ELQE+V+ +L +G+ +R
Sbjct: 4 NAAVYFLDRHLNEGRGDKIALYYD------DGSLTYGELQEEVNRWGNALRELGIERENR 57
Query: 137 VLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNK 196
VL+ + PE + +++GA+ + + L ++ +V++ + E
Sbjct: 58 VLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEELWE--- 114
Query: 197 VVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEA 256
V++ + L + I+ Y L A + + A
Sbjct: 115 VLKPALQKDPHLR-------HVIVVG----GAGPGALSYAQLIATAAEELEA---AATSA 160
Query: 257 NDPLYILYTSGTTGKPQGCSELRSEDQPKGIL--RPVGGHIATLAWTMSVIYNMGQDDVW 314
+D + LY+SG+TG+P+G L + + V G + +DDV
Sbjct: 161 DDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAKNVLG--------------ITEDDVV 206
Query: 315 WTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTA 374
++A+ + + G Y PL+ G T+V+ +P TPD + I +K F PT
Sbjct: 207 FSAAKLFFAYGLGNGLYFPLSVGATTVLMPERP--TPD--AVFATIERYKPTVFFGVPTL 262
Query: 375 L-RVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWWQTETG 432
++ +K + SLR AGE E W E F + +L+ TE
Sbjct: 263 YAAMLAAPEK-----PERDLSSLRLCVSAGEALPAEIGYRWKEL-FGLEILDGIGSTEML 316
Query: 433 H---SITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRK 489
H S + Y ++G P PGY
Sbjct: 317 HIFLSNRPGAVKYG--------TSGKPVPGY----------------------------- 339
Query: 490 NVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYF 549
EV+++ DG E E+G + V+ + + + ++
Sbjct: 340 --------------EVKLVDEDGEEVADGEIGELWVR---GDSSAAGYWNRREKTR---- 378
Query: 550 TKFPG-YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVI 608
F G + T D Y DE+GY + R DD++ V+G +S +ED +L HP V + AV+
Sbjct: 379 ETFVGEWTRTGDKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVV 438
Query: 609 GVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSI 668
G + L +P + + VL Y P
Sbjct: 439 GAEDED----------------------------GLTKPKAFV-----VLKDGYQP---- 461
Query: 669 YCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKS 716
E+ ELK+ V++ + P + V LP+T +GK R
Sbjct: 462 -----SPELETELKDFVKDKLAPYKYPRWIEFVDELPKTATGKIQRFK 504
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 3e-33
Identities = 120/531 (22%), Positives = 192/531 (36%), Gaps = 143/531 (26%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
RK+TYAEL E A L +GV GDRV + +P P+ ++ ++ GA+ V
Sbjct: 23 RKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPL 82
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE 227
+ REL +L + KV+I A
Sbjct: 83 YTPRELEHQLNDSGAKVLIVA--------------------------------------- 103
Query: 228 EAELTPGYDILWDDALAQRLSHRC-VPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKG 286
I ++DALA V + +D + YT GTTG PKG
Sbjct: 104 ---------ISFEDALASGAPLPLPVELSPDDLAVLQYTGGTTG------------VPKG 142
Query: 287 IL---RPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMY 343
+ R + ++ +A + + +D + TA + + G + L G T+V+
Sbjct: 143 AMLTHRNLVANVQQIAAWVKDL--REGEDRFLTALPLFHIFGLTVNMLLGLRLGATNVLV 200
Query: 344 EGKPDRTPDPSQYYRVIHNHK------VNGLFTAPTALRVIRREDKDSTLGAQYSTDSLR 397
P + I ++ V L+ A ++ + +Y SLR
Sbjct: 201 P-----NFRPINVLKEIKRYRFTIFPGVPTLYNA-----LLNHPEF-----KKYDFSSLR 245
Query: 398 YLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKY-STGLP 456
G E E+ ++ + TET T + K S GLP
Sbjct: 246 LCISGGAPLPVEVAERFEEKTGAPLVEGYGLTETSPVTTVN-----PLDGERKPGSIGLP 300
Query: 457 FPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECE 516
PG EV+I+ ++G+E
Sbjct: 301 LPG-------------------------------------------TEVKIVDDEGNELP 317
Query: 517 PHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARD 576
P E+G +VV+ P M + P+ + G+ T D GY DE+GY Y+ R
Sbjct: 318 PGEVGELVVR---GPQVMKGYWNRPE---ETAEVLTDGWLRTGDIGYMDEDGYFYIVDRK 371
Query: 577 DDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKR 627
D+I V G + +E+V+ SHP V + AV+GVP+P +GE ++ +
Sbjct: 372 KDMIIVGGFNVYPREIEEVLYSHPAVLEAAVVGVPDPYRGEAV-KAFVVLK 421
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|221322 pfam11930, DUF3448, Domain of unknown function (DUF3448) | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-31
Identities = 37/77 (48%), Positives = 50/77 (64%)
Query: 25 NDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAID 84
+ Y + Y +SIE PE FW + W K WD++LD S+ PF KWFVGG++NA YN +D
Sbjct: 4 MEAYQELYEESIEDPEGFWAEQAEELDWFKPWDKVLDWSNAPFIKWFVGGKLNASYNCLD 63
Query: 85 RHVERGMAKKVALIHDS 101
RH+E G KVA+I +
Sbjct: 64 RHLETGRGDKVAIIWEG 80
|
This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. This domain is about 80 amino acids in length. This domain is found associated with pfam00501. This domain has a conserved DRH sequence motif. This domain has two completely conserved residues (N and A) that may be functionally important. Length = 82 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 4e-31
Identities = 101/366 (27%), Positives = 142/366 (38%), Gaps = 83/366 (22%)
Query: 258 DPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317
DP ILYTSGTTG+P KG++ + A ++ DV+ A
Sbjct: 2 DPALILYTSGTTGRP------------KGVMLTHRN-LLANAVNALAGVDLSPGDVYLLA 48
Query: 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTAL-R 376
+ + G + LAAG T V+ DP +I H+V F PT R
Sbjct: 49 APLYHAAGGLF-LLPALAAGGTVVL-----MPKFDPEAVLDLIERHRVTHTFLVPTMFQR 102
Query: 377 VIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSIT 436
++R D A+Y SLR + E K + F + + TETG T
Sbjct: 103 LLRLPDF-----ARYDLSSLRLIIYGAAPMPAELKRAMIEWFGPVFVQGYGMTETG--PT 155
Query: 437 AHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQN 496
L + S G P PG
Sbjct: 156 TTLLSPEDWLRKLG-SVGRPVPG------------------------------------- 177
Query: 497 ATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQ---RFMKIYFTKFP 553
VEVRI+ DG E P E+G IVV+ P M+ + P+ ++
Sbjct: 178 ------VEVRIVDEDGRELPPGEVGEIVVR---GPAVMAGYWNRPEATAEALR------D 222
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G+ T D GY DE+GY+Y+ R D+I G + + +E+V+L+HP V D AVIGVP+
Sbjct: 223 GWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPDE 282
Query: 614 TKGEIP 619
GE
Sbjct: 283 EWGEAV 288
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 9e-31
Identities = 110/519 (21%), Positives = 172/519 (33%), Gaps = 132/519 (25%)
Query: 111 TYAELQEQVSLLAGSL-AAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
TY EL E+ + LA L AA GV GDRV + + E +V++LA ++ GA + + +
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 170 ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEA 229
A L LE A ++++ +
Sbjct: 61 AERLAFILEDAGARLLL--------------------------TDSALASRLAGLVLPVI 94
Query: 230 ELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILR 289
L P DDA A P +D Y++YTSG+TG+ PKG++
Sbjct: 95 LLDPLELAALDDAPA--PPPPDAPSGPDDLAYVIYTSGSTGR------------PKGVVV 140
Query: 290 PVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDR 349
+ LAW Y + DD + + + I +G L AG T V+ +R
Sbjct: 141 THRSLVNLLAWLARR-YGLDPDDRVLQFASLSFDASVEEI-FGALLAGATLVVPPEDEER 198
Query: 350 TPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHE 409
D + +I H V L P+ L ++ + SLR + + GE
Sbjct: 199 -DDAALLAALIAEHPVTVLNLTPSLLALLAAALPP-------ALASLRLVILGGEALTPA 250
Query: 410 T-KNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYST--GLPFPGYDGKYVN 466
W + ++N + TET ++ + D P + G P
Sbjct: 251 LVDRWRARGPGARLINLYGPTET--TVWSTATLVDPDDAPRESPVPIGRPLANTR----- 303
Query: 467 IVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHEL---GRI 523
+ +L + LR VP G EL G
Sbjct: 304 -------------LYVLDDDLRP-VPVG---------------------VVGELYIGGPG 328
Query: 524 V---------------VKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENG 568
V V P G + LY+ T D Y +G
Sbjct: 329 VARGYLNRPELTAERFVPDPFAGGDGARLYR------------------TGDLVRYLPDG 370
Query: 569 YIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAV 607
+ R DD + + G+R+ +E +L HP V + V
Sbjct: 371 NLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV 409
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 1e-29
Identities = 96/360 (26%), Positives = 156/360 (43%), Gaps = 27/360 (7%)
Query: 28 YYDAYRKSIEAPESFWTDVGNMA--TWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDR 85
Y +R S++ ++FW V +S R++D+ P +WF G +N N + R
Sbjct: 37 YDALHRWSVDELDTFWKAVWEWFDVRFSTPCARVVDDRTMPGAQWFPGARLNYAENLL-R 95
Query: 86 HVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIP 145
L D T VT+AEL+ QV+ LA +L A+GV GDRV Y+P IP
Sbjct: 96 AAGTE---PALLYVDE--THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIP 150
Query: 146 EAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVV-RYKTIL 204
+A+V+MLAT +GAI S F AR + R + +PK++ K R +
Sbjct: 151 QAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVA 210
Query: 205 NEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCV--PVEANDPLYI 262
E+ + + I + EA G + +D A + V + + PL+I
Sbjct: 211 EVRKELPTLRAVVHIPYLGPRETEAPKIDG-ALDLEDFTAAAQAAELVFEQLPFDHPLWI 269
Query: 263 LYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGW 322
L++SGTTG PK I+ GG + + ++G D + + GW
Sbjct: 270 LFSSGTTG------------LPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGW 317
Query: 323 VVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRED 382
++ +++ G LA G T V+Y+G P P + + + T+ + R+
Sbjct: 318 MM-WNWLVSG-LATGATLVLYDGSP-GFPATNVLWDIAERTGATLFGTSAKYVMACRKAG 374
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 5e-29
Identities = 135/556 (24%), Positives = 204/556 (36%), Gaps = 126/556 (22%)
Query: 84 DRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPL 143
D V K A+ T + R+ TY EL V +A LA +GV GD V +P
Sbjct: 31 DACVAS-CPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPN 89
Query: 144 IPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTI 203
E V LA R+GA+ + + F REL L+HA+ KV++ ++
Sbjct: 90 WWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPK---------TFRGF 140
Query: 204 LNEAL--EISSCKPDYCIIFQRRCVEEAELTPGYDIL-----WD---DALAQRLSHRCVP 253
+ A+ + P + V + ++ L W+ DA A R P
Sbjct: 141 DHAAMARRLRPELPA----LRHVVVVGGDGADSFEALLITPAWEQEPDAPAILARLRPGP 196
Query: 254 VEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIY----NMG 309
+D ++YTSGTTG+P KG++ H A V Y +G
Sbjct: 197 ---DDVTQLIYTSGTTGEP------------KGVM-----HTANTLMANIVPYAERLGLG 236
Query: 310 QDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLF 369
DDV AS M G Y P+ G T+V+ + DP++ +I V F
Sbjct: 237 ADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQD-----IWDPARAAELIRTEGVT--F 289
Query: 370 T-APTA-----LRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTML 423
T A T R ++ + + SLR AG A + ++
Sbjct: 290 TMASTPFLTDLTRAVKESGRPVS--------SLRTFLCAGAPIPGALVERARAALGAKIV 341
Query: 424 NHWWQTETGHSITAHCLGYQHDTVPPKYST--GLPFPGYDGKYVNIVMLNWLDGRAHCVR 481
+ W TE G ++T L D + ST G P PG
Sbjct: 342 SAWGMTENG-AVTLTKL----DDPDERASTTDGCPLPG---------------------- 374
Query: 482 ILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAP 541
VEVR++ DG+ ++GR+ V+ K P
Sbjct: 375 ---------------------VEVRVVDADGAPLPAGQIGRLQVR---GCSNFGGYLKRP 410
Query: 542 QRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPD 601
Q T G++DT D D +GYI ++ R DVI G + +E ++ HP
Sbjct: 411 QL----NGTDADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPA 466
Query: 602 VGDTAVIGVPEPTKGE 617
+ A++ P+ GE
Sbjct: 467 IAQVAIVAYPDERLGE 482
|
Length = 547 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 7e-29
Identities = 122/498 (24%), Positives = 175/498 (35%), Gaps = 139/498 (27%)
Query: 233 PGYDILWDDALAQRLSH---RCV---PVEANDPLYILYTSGTTGKPQGCSELRSEDQPKG 286
P +L L R S + + A+DP+ + +TSGTTG P K
Sbjct: 54 PATTLLTPADLRDRFSRGKPKAIVADETRADDPILLYFTSGTTGLP------------KL 101
Query: 287 ILR-----PVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYIC-YGPLAAGITS 340
+L PVG H++T+ W + D+ S GW H++ + P AG T
Sbjct: 102 VLHTHVSYPVG-HLSTMYWI-----GLQPGDIHLNISSPGWA-KHAWSSFFAPWNAGATV 154
Query: 341 VMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLF 400
D +Y + V PT R+ ++D AQY LR
Sbjct: 155 FGIN---YPRFDARRYLGALEKFGVTTFCAPPTVWRMFIQQDL-----AQYDV-RLREAV 205
Query: 401 VAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGY 460
AGE + E +K++ +T+ + + QTET TA V P S G P PGY
Sbjct: 206 SAGEPLNPEVIERVKKAWGLTIRDGYGQTET----TAMIGNSPGQKVKPG-SMGRPLPGY 260
Query: 461 DGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHEL 520
V ++ ++G E P
Sbjct: 261 R-------------------------------------------VVLLDDEGKEI-PVTE 276
Query: 521 GRIVVKL-PLPPGTMSTLYKAPQRFMKIYFTKFP--GYYDTMDAGYYDENGYIYVTARDD 577
G I + L P G M P++ GYY T D Y DE+GY++ R D
Sbjct: 277 GEIALDLGDRPIGLMLGYMGDPEKT-----AAAFRGGYYRTGDKAYRDEDGYLWFVGRAD 331
Query: 578 DVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSG 637
DV + +R+S +E +L HP V + AV+ P+P + +P K I
Sbjct: 332 DVFKSSDYRISPFEVESALLEHPAVAEAAVVPSPDPIRLAVP-----KAYI--------- 377
Query: 638 LIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKL 697
VL Y P E+ EL VRE + P +
Sbjct: 378 -------------------VLKPGYEP---------SRELALELFAHVRERLAPYKRIRR 409
Query: 698 STSVTGLPRTRSGKTARK 715
V LP+T SGK R
Sbjct: 410 IEFVGELPKTISGKIRRV 427
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 1e-28
Identities = 137/618 (22%), Positives = 236/618 (38%), Gaps = 138/618 (22%)
Query: 109 KVTYAELQEQVSLLAGSLA-AIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
K ++ EL A L+ A G+ GDRV + +P +PE + +A +R G +
Sbjct: 41 KWSFRELGSLSRKAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQ 100
Query: 168 FAARELCARLEHAKPKVIIAA-SCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCV 226
A+++ RL+ +K K I+ + + + L L +S D + F+
Sbjct: 101 LTAKDILYRLQASKAKCIVTSDELAPAVDSIASECPSLKTKLLVSEHSRDGWLNFKELLK 160
Query: 227 EEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKG 286
E + H CV ++ +P+ I +TSGTTG P+ S G
Sbjct: 161 EAST-----------------EHTCVKTKSQEPMAIYFTSGTTGFPKMAEHSHSS---LG 200
Query: 287 ILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGK 346
+ V G W ++ D+ W SD GW+ + + P G ++
Sbjct: 201 LGLKVNGR----YWL-----DLTPSDIMWNMSDTGWIKAAIWSLFSPWIQGACVFVH--- 248
Query: 347 PDRTP--DPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGE 404
P DP + + + + +APT R++ ++D S Y SLR+ GE
Sbjct: 249 --HLPRFDPKVILQTLSKYPITTFCSAPTVYRMLVQQDLTS-----YKFKSLRHCVTGGE 301
Query: 405 HCDHET-KNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGK 463
+ E + W ++ + + + QTETG C ++ + P S G P YD
Sbjct: 302 PLNPEVLEQWKAQT-GLDLYEGYGQTETGLI----CANFKGMKIKPG-SMGKASPPYD-- 353
Query: 464 YVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRI 523
V+II ++G+ P G I
Sbjct: 354 -----------------------------------------VQIIDDNGNVLPPGTEGDI 372
Query: 524 VVKL-PLPPGTMSTLYKA-PQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVIN 581
+++ P P + + Y P++ T +Y T D G DE+GY + R DDVIN
Sbjct: 373 GIRVKPTRPFCLFSCYVDNPEKTAA---TIRGDFYITGDRGIMDEDGYFWFVGRADDVIN 429
Query: 582 VAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGF 641
+G+R+ +E ++ HP V ++AV+ P+P +GE+
Sbjct: 430 SSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEV----------------------- 466
Query: 642 GKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSV 701
+K + ++ + + E++ KEL+E V+ P + V
Sbjct: 467 -----------------VKAFVVLAPQFLSHDPEQLTKELQEHVKSVTAPYKYPRKVEFV 509
Query: 702 TGLPRTRSGKTARKSIVD 719
LP+T +GK R + D
Sbjct: 510 QELPKTITGKIKRNELRD 527
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 5e-27
Identities = 117/521 (22%), Positives = 175/521 (33%), Gaps = 143/521 (27%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
R++TY EL V LA L A+G+ GDRVL+ +P + E ++ A +LGAI +
Sbjct: 39 RRLTYRELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEFVILYFALFKLGAIPVLALPA 98
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE 227
A E+ ++ K I A R+ DY
Sbjct: 99 HRAHEIGHFARQSEAKAYIIAD---------RFSGF------------DYA--------- 128
Query: 228 EAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGI 287
ALA+ L D + GTTG PK I
Sbjct: 129 --------------ALARELLEEL-----PDVALFQLSGGTTG------------LPKLI 157
Query: 288 LRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWV--VGHSYICYGP-----LAAGITS 340
R ++ + + + V+ V H++ P L AG T
Sbjct: 158 PRTHNDYLYSARASAE-ACGLDPGTVYL------AVLPAAHNFTLSSPGLLGALLAGGTV 210
Query: 341 VMYEGKPDRTPDPSQYYRVIHNHKVNGLFTA--PTALRVIRREDKDSTLGAQYSTDSLRY 398
V++ P P + +I KV TA P L + ++ Q SLR
Sbjct: 211 VLHH-----PPSPDVAFPLIEREKVT--HTALVPALLNLWL----EAAEWDQADLSSLRV 259
Query: 399 LFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVP-PKYST-GLP 456
+ V G E E+ + + E + D P T G P
Sbjct: 260 IQVGGAPLSPELARRVEERLGCPLQQVFGMAE------GLVNYTRLDDPPDVIMRTQGRP 313
Query: 457 FPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECE 516
D +RI+ + G
Sbjct: 314 ISPADE-----------------IRIVDD-------------------------QGEPVP 331
Query: 517 PHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARD 576
P E+G ++ + P T+ Y+AP+ FT G+Y T D D +GY V R
Sbjct: 332 PGEVGELLTR---GPYTIRGYYRAPE-HNARAFTD-DGFYRTGDLVRIDADGYYRVVGRI 386
Query: 577 DDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
D IN G ++S +E+++LSHP V D AV+G+P+ GE
Sbjct: 387 KDQINRGGEKISPEEIENLLLSHPAVADAAVVGMPDEVLGE 427
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 8e-27
Identities = 125/543 (23%), Positives = 198/543 (36%), Gaps = 129/543 (23%)
Query: 94 KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153
+ ALI D+ + R +TYAEL+ V LA LAA G GD VL+ P E V LA
Sbjct: 21 RPALI-DAA---TGRALTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLA 76
Query: 154 TVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVR---YKTILNEALEI 210
+ GA+ + + E+ +++ + K+ I S E K+ +L ++ +
Sbjct: 77 VLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAITTSELAE--KLASLALEPVVLLDSADD 134
Query: 211 SSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTG 270
S D A V ++ +D + Y+SGTTG
Sbjct: 135 GSAAI-----------------------DDLLFADEPEPPVVVIKQDDVAALPYSSGTTG 171
Query: 271 KPQGCSELRSEDQPKGILRPVGGHIATLA-WTMSVIYNMGQDDVWWTASDMGWVVGHSYI 329
+ KG++ IA +A N ++DV M + G + I
Sbjct: 172 RS------------KGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVI 219
Query: 330 CYGPLAAGITSV-MYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLG 388
L G T V M P D ++ I +KV L P + + + +
Sbjct: 220 LLALLRLGATVVVM----PRF--DLEKFLAAIEKYKVTHLPVVPPIVLALVKHP----IV 269
Query: 389 AQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTV 447
+Y SL+ + E + + + V + + TE+ T + +
Sbjct: 270 DKYDLSSLKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKD--- 326
Query: 448 PPKY-STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVR 506
PK S G P VE +
Sbjct: 327 -PKPGSVGRLVPN-------------------------------------------VEAK 342
Query: 507 IIRNDGSECEPHELGRIVVKLPLPPGTMSTLY-KAPQRFMKIYF-----TKFP----GYY 556
I+ D E G LPP L+ + PQ MK Y T G+
Sbjct: 343 IV--D------PETGE-----SLPPNQPGELWVRGPQ-VMKGYLNNPEATAETIDKDGWL 388
Query: 557 DTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKG 616
T D GY+DE+GY+++ R ++I G +++ + LE ++LSHP++ D AVI P+ G
Sbjct: 389 HTGDLGYFDEDGYLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAG 448
Query: 617 EIP 619
EIP
Sbjct: 449 EIP 451
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 6e-26
Identities = 112/466 (24%), Positives = 177/466 (37%), Gaps = 135/466 (28%)
Query: 256 ANDPLYILYTSGTTGKPQGCSELR------SEDQPKGILRPVGGHIATLAWTMSVIYNMG 309
A+D I +TSGTTG P+G + P+ +L+P
Sbjct: 146 ADDVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPT------------------ 187
Query: 310 QDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLF 369
DDV+ + + + G + PL G ++V+ E P + I H+ LF
Sbjct: 188 PDDVFIGSPPLAFTFGLGGLVLFPLRFGASAVLLE-----QATPPLLLKAIQEHRATILF 242
Query: 370 TAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWWQ 428
TAPTA R + + K + SLR AGE + ++W E++ + +++
Sbjct: 243 TAPTAYRAMLIKVKA------FDISSLRKCVSAGETLPAKVWQDWYERT-GLKIIDGIGA 295
Query: 429 TETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLR 488
TE H + + P +TG P PGY
Sbjct: 296 TEMLH----IFISANEENAKPG-ATGKPVPGY---------------------------- 322
Query: 489 KNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIY 548
E RI+ + G+E E GR+ V+ G Y +R + Y
Sbjct: 323 ---------------EARIVDDQGNEVPRGEAGRLAVR-----GPTGCRYLDDER-QQEY 361
Query: 549 FTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVI 608
G+ T D DE+GY + AR DD+I AG+ ++ +ED +L+HPDV + AVI
Sbjct: 362 VRD--GWNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVI 419
Query: 609 GVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSI 668
GVP+ +G+I C +I VL
Sbjct: 420 GVPDEERGQI-VCAHI--------------------------------VLRDG------- 439
Query: 669 YCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTAR 714
T++ E + + L++ V+ I P + V LP+T++GK R
Sbjct: 440 --TKATELLAERLQDFVKAVIAPYKYPREINFVDALPKTQTGKIQR 483
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 1e-25
Identities = 83/379 (21%), Positives = 124/379 (32%), Gaps = 89/379 (23%)
Query: 253 PVEANDPLYILYTSGTTGKPQG-----CSELRSEDQPKGILRPVGGHIATLAWTMSVIYN 307
+D +LYTSGTTG+P+G + L R +
Sbjct: 89 AAMPDDVALLLYTSGTTGEPKGVMHTHNTLLAEV-------RSYVERLG----------- 130
Query: 308 MGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYE-GKPDRTPDPSQYYRVIHNHKVN 366
+ DDV S + + G Y PL G T V+ + P R + +I H V
Sbjct: 131 LTPDDVVLMPSPLAHITGFLYGLELPLLLGATVVLQDRWDPARALE------LIREHGVT 184
Query: 367 GLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHW 426
A L + A SLR G E A ++ ++ +
Sbjct: 185 FTMGATPFLADLLAAADA----AGPDLPSLRVFLCGGAPVPRELARRAAEALGAKVVRAY 240
Query: 427 WQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPES 486
TE +T P DGR
Sbjct: 241 GMTEVPL-VTVG-----TPDDPDDKRAAT------------------DGRP--------- 267
Query: 487 LRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMK 546
VEVRI+ +DG++ P E G + V+ P P
Sbjct: 268 -------------VPGVEVRIVDDDGNDVPPGEEGELQVR---GPQLFLGYLDPPDNTEA 311
Query: 547 IYFTKFP-GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDT 605
G++ T D G D +GY+ +T R D+I G +S +ED++L HP V +
Sbjct: 312 F----TDDGWFRTGDLGRLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEV 367
Query: 606 AVIGVPEPTKGEIPFCLYI 624
AV+ +P+ GE C +
Sbjct: 368 AVVAMPDERLGER-VCAVV 385
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 107 bits (271), Expect = 2e-25
Identities = 85/375 (22%), Positives = 132/375 (35%), Gaps = 97/375 (25%)
Query: 258 DPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATL--AWTMSVIYNMGQDDVWW 315
DP I YTSGTTG+P+G + H L ++++ + + D
Sbjct: 3 DPALIQYTSGTTGRPKGA---------------MLTHRNVLNNGYSIARRLGLTEGDRTL 47
Query: 316 --------TASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNG 367
+G + L AG T V+ DP R+I ++
Sbjct: 48 VPVPLFHVFGLVLGVL--------ASLTAGATLVL-----MEKFDPGAALRLIERERITA 94
Query: 368 LFTAPT-ALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVT-MLNH 425
L PT + ++ D D ++ SLR G E + F + +
Sbjct: 95 LHGVPTMFIALLEHPDFD-----KFDLSSLRTGISGGAPVPPELVRRIREEFPMAEITTG 149
Query: 426 WWQTETGHSITAHCLGYQHDTVPPK-YSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILP 484
+ TET T D + + G P PG
Sbjct: 150 YGMTETSGVGTQTSGD---DPYEDRPGTVGRPLPG------------------------- 181
Query: 485 ESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRF 544
VEV+I+ DG E P E+G I V+ M Y P+
Sbjct: 182 ------------------VEVKIVDPDGGEVPPGEVGEICVR---GYSVMKGYYNDPEAT 220
Query: 545 MKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGD 604
+ G+ T D GY DE+GY+ + R D+I G + + +E+ +L+HP V +
Sbjct: 221 AEAIDA--DGWLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAE 278
Query: 605 TAVIGVPEPTKGEIP 619
AV+GVP+ GE+
Sbjct: 279 AAVVGVPDERLGEVV 293
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-24
Identities = 103/491 (20%), Positives = 161/491 (32%), Gaps = 147/491 (29%)
Query: 241 DALAQRLSH---RCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIAT 297
L L + EA+D Y LYTSGTTGKP+G + P +
Sbjct: 72 QDLEHILDDSGAALLVTEADDIAYWLYTSGTTGKPKGV--MHRHRDPLTFAEAFARELLG 129
Query: 298 LAWTMSVIYNMGQDDVWWTASDM--GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQ 355
L D +++S + + +G+S PL +G ++V+ G P P
Sbjct: 130 LQ----------PGDRIFSSSKLFFAYGLGNSL--LFPLFSGASAVLLPGW----PTPEA 173
Query: 356 YYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWA 414
++ H+ LF P R + +S G+ S+R AGE + WA
Sbjct: 174 VLDLLARHRPTVLFGVPALYRALL----ESGAGSAPLFRSVRLCVSAGEALPAGLAERWA 229
Query: 415 EKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLD 474
E + + +L+ TE H ++ + P +TG P PGY
Sbjct: 230 E-ATGIEILDGIGSTEVLHIFISN----RPGAARPG-TTGRPVPGY-------------- 269
Query: 475 GRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLP------ 528
E R++ G E +G + V+ P
Sbjct: 270 -----------------------------EARLVDESGREVPAGTVGDLWVRGPSLAPGY 300
Query: 529 --LPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHR 586
LP T TL G+ T D D +G+ R DD+I V+G
Sbjct: 301 WNLPEKTQRTLRD--------------GWLRTGDRFSRDADGWYRYQGRADDMIKVSGQW 346
Query: 587 LSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLER 646
+S +E + HP V + AV+ VP+ G L F
Sbjct: 347 VSPLEVEAALGEHPAVAEAAVVAVPDED-------------------GLVRLKAFVVPRP 387
Query: 647 PTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVT---G 703
+ + + ++L +RE +A +K +
Sbjct: 388 GEA-----------------------IQQLLERDLHRFLRER---LAPYKCPRQIEFLDT 421
Query: 704 LPRTRSGKTAR 714
LPRT +GK R
Sbjct: 422 LPRTATGKLQR 432
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 6e-23
Identities = 93/373 (24%), Positives = 140/373 (37%), Gaps = 94/373 (25%)
Query: 258 DPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVI-Y-NMGQDDVWW 315
D I+YTSG+TG+P KG+ + H A S+ Y + +DD
Sbjct: 3 DLAAIIYTSGSTGEP------------KGV---MLSHRNLTAGARSIAQYLELTEDDRIL 47
Query: 316 TASDMGWVVGHSYICYG------PLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLF 369
YG G T V+ R P + + ++ G
Sbjct: 48 AVLPF-------SFDYGLSQLLTAFRVGGTLVLES----RFAFPRDVLKHLAKERITGFA 96
Query: 370 TAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQ 428
PT + R D A+ SLRYL AG +T ++F + + + +
Sbjct: 97 GVPTTWAQLLRLDPL----AREDFPSLRYLTNAGGALPAKTILQLRRAFPDAKLFSMYGL 152
Query: 429 TETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLR 488
TE ST LP P LD R P+S+
Sbjct: 153 TEA------------------FRSTYLP-PEE------------LDRR-------PDSIG 174
Query: 489 KNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQ----RF 544
K +P +VE+ ++ DG+ C P E+G +V + M + P+ R
Sbjct: 175 KAIP---------NVELWVVDEDGNRCAPGEVGELVHRGAN---VMKGYWNDPEATAERL 222
Query: 545 MKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGD 604
Y T D DE GY+Y R DD+I G+R+S + +E+V+ +HP V +
Sbjct: 223 RPGPLPGEIVLY-TGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLVAE 281
Query: 605 TAVIGVPEPTKGE 617
AVIGVP+P G+
Sbjct: 282 AAVIGVPDPLLGQ 294
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 6e-23
Identities = 128/536 (23%), Positives = 200/536 (37%), Gaps = 107/536 (19%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
+TYAEL E A L GV AGDRV +++P P+ + ++LGA+H V
Sbjct: 57 HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPL 116
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCK--PDYCIIFQRRC 225
F EL L A +V++A + VR +T L + S P +
Sbjct: 117 FREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDS 176
Query: 226 VEEAELTPGYDILWDDAL----AQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSE 281
+ L D L A P + + YT GTTG P+GC
Sbjct: 177 LRAPRLAAAG---AIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGC------ 227
Query: 282 DQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSV 341
+ T A +V G+D V+ + W+ G ++ PL +G T V
Sbjct: 228 ------EHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLV 281
Query: 342 MYEGKPDRTPDPSQYYRVIHNHKVNGLF-TAPTALRVIRREDKDSTLGAQYSTDSLRYL- 399
+ R D + + ++V A+ ++ D A+Y SLR +
Sbjct: 282 LLA----RW-DAVAFMAAVERYRVTRTVMLVDNAVELM-----DHPRFAEYDLSSLRQVR 331
Query: 400 ---FVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQ---HDTVPPKYST 453
FV + D+ + W + +V W TET H+ G+Q D +
Sbjct: 332 VVSFVKKLNPDYR-QRWRALTGSVLAEAAWGMTET-HTCDTFTAGFQDDDFDLLSQPVFV 389
Query: 454 GLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGS 513
GLP PG + K + F + E+ + G+
Sbjct: 390 GLPVPGTEFKICD---------------------------------FETGELLPL---GA 413
Query: 514 ECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFP---------GYYDTMDAGYY 564
E G IVV+ P +L K Y+ K P G+ T D G
Sbjct: 414 E------GEIVVRTP-------SLLKG-------YWNK-PEATAEALRDGWLHTGDIGKI 452
Query: 565 DENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPF 620
DE G+++ R +++ V G + S +E ++ HP V +AV+G P+P KG++P
Sbjct: 453 DEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPV 508
|
Length = 567 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 2e-22
Identities = 87/368 (23%), Positives = 128/368 (34%), Gaps = 104/368 (28%)
Query: 258 DPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317
D ILYTSGTTG P KG+L + A + + + DDV T
Sbjct: 82 DTAAILYTSGTTGPP------------KGVLLT-HAQLLFAARLAARLLGLRPDDVLLTP 128
Query: 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRV 377
+ + +Y Y L G T V+ S+++ + H +
Sbjct: 129 LPLFHINAQAYSVYAALLVGATLVLLPRF-----SASRFWDQVRKHGATVFNLLGAMAAI 183
Query: 378 I-----RREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETG 432
+ +D+D LR++F A E+ F V ++ + TETG
Sbjct: 184 LMKQPPSPDDRDH---------PLRFVFGAP--LPAAIWPAFEERFGVKLVEGYGMTETG 232
Query: 433 HSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVP 492
I + P S G P PG
Sbjct: 233 VPI----IAPGDPAPPG--SCGRPRPGV-------------------------------- 254
Query: 493 KGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKF 552
EVRI+ DG E P E+G +VV+ P P M K Y+
Sbjct: 255 -----------EVRIVDEDGREVPPGEVGELVVR-PRRPWAM----------FKGYY-GM 291
Query: 553 P---------GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVG 603
P G++ T D G DE+G++Y R D I G +S+ +E +L+HP V
Sbjct: 292 PEATAKAWRNGWFHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVA 351
Query: 604 DTAVIGVP 611
+ AV+ VP
Sbjct: 352 EAAVVAVP 359
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 2e-21
Identities = 131/552 (23%), Positives = 202/552 (36%), Gaps = 112/552 (20%)
Query: 83 IDRHVERGMAK---KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLI 139
I+ H + +A K AL ++R+ +Y EL +V +A LA +GV GD V
Sbjct: 24 INDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSF 83
Query: 140 YMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVR 199
+P E LA R+GA+ + + F REL L HA KV + S
Sbjct: 84 QLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPS---------V 134
Query: 200 YKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL-----WD---DALAQRLSHRC 251
++ + A+ + + Q V + + +D + D DA A R
Sbjct: 135 FRGFDHAAM-ARELQSKLPALRQV-VVIDGDGDDSFDRVLMTPERDDTPDAAAILAGPRP 192
Query: 252 VPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIY----N 307
P +D ++YTSGTTG +PKG++ H A ++ Y
Sbjct: 193 SP---DDVTQLIYTSGTTG------------EPKGVM-----HTANTLFSNIHPYAERLE 232
Query: 308 MGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNG 367
+G DV AS M G Y PL T+V+ + +P++ +I V
Sbjct: 233 LGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQD-----IWNPARAAELIRETGVTF 287
Query: 368 LFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWW 427
+ L + R K+S GA SL AG A + +++ W
Sbjct: 288 TMASTPFLTDLCRAVKES--GAPVP--SLFTFLCAGAPIPGILVERAWELLGALIVSAWG 343
Query: 428 QTETGHSITAHCLGYQHDTVPPKYST--GLPFPGYDGKYVNIVMLNWLDGRAHCVRILPE 485
TE G + D K ST G P PG
Sbjct: 344 MTENGAVTVT-----EPDDALEKASTTDGRPLPG-------------------------- 372
Query: 486 SLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFM 545
VEV++I +G++ E GR++V+ K P
Sbjct: 373 -----------------VEVKVIDANGAKLSQGETGRLLVR---GCSNFGGYLKRPH--- 409
Query: 546 KIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDT 605
+ T G++DT D + D GYI + R DVI G + +E+++ HP V
Sbjct: 410 -LNSTDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQV 468
Query: 606 AVIGVPEPTKGE 617
A++ P+ GE
Sbjct: 469 AIVAYPDERLGE 480
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 3e-21
Identities = 145/643 (22%), Positives = 226/643 (35%), Gaps = 195/643 (30%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
VTY EL+ + + LA L A+G+ GD V I + PE A R G ++ +
Sbjct: 12 VTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLT 71
Query: 170 ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEA 229
A E+ ++ + KV+I ++ + A E+++ P + A
Sbjct: 72 AAEIAYIVDDSGAKVLIVSAALAD------------TAAELAAELPAGV----PLLLVVA 115
Query: 230 ELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILR 289
PG+ +++ALA + A + LY+SGTTG+ PKGI R
Sbjct: 116 GPVPGFRS-YEEALAAQPDTPIADETAGADM--LYSSGTTGR------------PKGIKR 160
Query: 290 P-VGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPL-------------A 335
P G M + G M Y+ PL A
Sbjct: 161 PLPGLDPDEAPGMMLALLGFG----------MYGGPDSVYLSPAPLYHTAPLRFGMSALA 210
Query: 336 AGITSVMYEG-KPDRTPDPSQYYRVIHNHKVNGLFTA----PTALRVIRREDKDSTLGAQ 390
G T V+ E + + YRV H+ V +F P +R A+
Sbjct: 211 LGGTVVVMEKFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVR------------AR 258
Query: 391 YSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWW---------QTETGHS--ITAHC 439
Y SLR A C E K M++ WW +E G IT+
Sbjct: 259 YDVSSLRVAIHAAAPCPVEVKR--------AMID-WWGPIIHEYYASSEGGGVTVITSE- 308
Query: 440 LGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATH 499
L PG GK V G VRIL E
Sbjct: 309 -------------DWLAHPGSVGKAV--------LGE---VRILDE-------------- 330
Query: 500 FTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTM 559
DG+E P E+G + ++ P + P++ G+
Sbjct: 331 -----------DGNELPPGEIGTVYFEMDGYP---FEYHNDPEKTAAARNPH--GWVTVG 374
Query: 560 DAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIP 619
D GY DE+GY+Y+T R D+I G + +E+++++HP V D AV GVP+
Sbjct: 375 DVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPD------- 427
Query: 620 FCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGK 679
++MG ER ++ +++P + + +
Sbjct: 428 -----------EEMG----------ER--------VKAVVQP------ADGADAGDALAA 452
Query: 680 ELKELVREAIGPIAAFKLSTSV---TGLPRTRSGKTARKSIVD 719
EL +R +A +K S+ LPRT +GK ++ + D
Sbjct: 453 ELIAWLRGR---LAHYKCPRSIDFEDELPRTPTGKLYKRRLRD 492
|
Length = 502 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 1e-20
Identities = 136/649 (20%), Positives = 235/649 (36%), Gaps = 155/649 (23%)
Query: 74 GEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSA 133
+ NA + +DR+V G K A I D I ++Y EL+ QV L +L +GV
Sbjct: 1 EKYNAAEDLLDRNVVEGRGGKTAFIDD------ISSLSYGELEAQVRRLGAALRRLGVKR 54
Query: 134 GDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVE 193
+RVL+ M + ++ L +R G + + A + LE ++ +V+ +
Sbjct: 55 EERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSG---- 110
Query: 194 PNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVP 253
++ AL S P V G L + + +
Sbjct: 111 -----ELLPVIKAALGKS---PH-----LEHRVVVGRPEAGEVQLAELLATESEQFKPAA 157
Query: 254 VEANDPLYILYTSGTTGKPQGCSELRSEDQPKGIL--RPVGGHIATLAWTMSVIYNMGQD 311
+A+DP + LY+SG+TG P+G S L R G + +D
Sbjct: 158 TQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLG--------------IRED 203
Query: 312 DVWWTASDM--GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLF 369
DV ++A+ + + +G++ P++ G T+V+ +R P P + + H+ +
Sbjct: 204 DVVFSAAKLFFAYGLGNALTF--PMSVGATTVLM---GER-PTPDAVFDRLRRHQPTIFY 257
Query: 370 TAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQT 429
PT + D L A+ LR AGE E + F V +++ T
Sbjct: 258 GVPTLYAAML---ADPNLPAE-DQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGST 313
Query: 430 ETGH---SITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPES 486
E H S + Y ++G P PGY
Sbjct: 314 EMLHIFLSNLPGDVRYG--------TSGKPVPGY-------------------------- 339
Query: 487 LRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMK 546
+R++ + G + E G +++ P TM +A R
Sbjct: 340 -----------------RLRLVGDGGQDVAAGEPGELLISGP-SSATMYWNNRAKTR--- 378
Query: 547 IYFTKFPG-YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDT 605
F G + + D +++G R DD++ V+G +S +E ++ HP V +
Sbjct: 379 ---DTFQGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEA 435
Query: 606 AVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPI 665
AV+GV + GLI +P + ++++P I
Sbjct: 436 AVVGVEDE----------------------DGLI------KPKAF------IVLRPGQDI 461
Query: 666 SSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTAR 714
+ T ELKE V++ + P + V LP+T +GK R
Sbjct: 462 DTALET--------ELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQR 502
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 1e-20
Identities = 106/521 (20%), Positives = 186/521 (35%), Gaps = 111/521 (21%)
Query: 111 TYAELQEQVSLLAGSLA-AIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
TY +L E VS +A L + V G+R+ I E IV + A ++ I +
Sbjct: 29 TYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLT 88
Query: 170 ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEA 229
EL +L+ + V+ KT N AL + +
Sbjct: 89 ENELIFQLKDSGTTVLFVE------------KTFQNMALSMQK---------------VS 121
Query: 230 ELTPGYDILWDDALAQRLSHR---CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKG 286
+ ++ +L + + V + I YTSGTTGKP+G + L E+
Sbjct: 122 YVQR---VISITSLKEIEDRKIDNFVEKNESASFIICYTSGTTGKPKG-AVLTQENMFWN 177
Query: 287 ILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGK 346
L + + TM D + + G + L AG ++
Sbjct: 178 ALN----NTFAIDLTM--------HDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIV---- 221
Query: 347 PDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHC 406
P + +P++ +I HKV + PT + + + + + S+R+ + G C
Sbjct: 222 PRKF-EPTKALSMIEKHKVTVVMGVPTIHQALI----NCSKFETTNLQSVRWFYNGGAPC 276
Query: 407 DHE-TKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYV 465
E + + ++ F G +T +T P
Sbjct: 277 PEELMREFIDRGFLFGQ---------GFGMT--------ETSP----------------- 302
Query: 466 NIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVV 525
+ ML+ D R S+ K V F + +I + ++ E E+G +++
Sbjct: 303 TVFMLSEEDARRK-----VGSIGKPVL-------FC--DYELIDENKNKVEVGEVGELLI 348
Query: 526 KLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGH 585
+ P M + P + T G+ T D DE+G++Y+ R ++I G
Sbjct: 349 R---GPNVMKEYWNRPDATEE---TIQDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGE 402
Query: 586 RLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKK 626
+ +E V+ DV + AV+G GEIP +KK
Sbjct: 403 NIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKK 443
|
Length = 496 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 3e-20
Identities = 126/558 (22%), Positives = 198/558 (35%), Gaps = 145/558 (25%)
Query: 105 KSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRV------------LIYMPLIPEAIVSML 152
SI + TYA+ +V LA +L ++GV GDRV L + A+ M
Sbjct: 21 GSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYF------AVPGMG 74
Query: 153 AT-----VRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEA 207
A RL + ++ + HA+ KVI L
Sbjct: 75 AVLHTLNPRL-----------SPEQIAYIINHAEDKVIFV------------DDDFLPLL 111
Query: 208 LEISSCKPD--YCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVP-VEANDPLYILY 264
I+ P +++ + E L Y +++ L + P ++ N + Y
Sbjct: 112 EAIAPRLPTVKAVVVYDDADMPETSLPNVYA--YEELLEEESPEYEWPELDENTAAGLCY 169
Query: 265 TSGTTGKPQGCSELRSEDQPKGIL---RPVGGHIATLAWTMSVIYNMGQDDVWWTASDM- 320
TSGTTG P KG++ R + H A S+ + + D M
Sbjct: 170 TSGTTGNP------------KGVVYSHRSLVLHTLASALPDSL--GLSESDTVLPVVPMF 215
Query: 321 ---GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRV 377
W + Y G V+ P R DP+ +I KV PT
Sbjct: 216 HVNAWGLP-----YAATMVGAKLVL----PGRYLDPASLLDLIEEEKVTVSAGVPTIWLG 266
Query: 378 IRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITA 437
+ + SLR + V G E+ V +++ W TET T
Sbjct: 267 LL----NYLEANGKDLSSLRRVVVGGSALPRSLIEKLEERG-VEVIHAWGMTETSPLGTV 321
Query: 438 HCLGYQHDTVPP------KYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNV 491
L +P + G P PG
Sbjct: 322 SRLKPHLVDLPEEEKLELRAKQGRPVPG-------------------------------- 349
Query: 492 PKGQNATHFTSVEVRIIRNDGSECEPHE---LGRIVVKLPLPPGTMSTLYKAPQRFMKIY 548
VE+RI+ ++G+E P + +G +VV+ P + YK P++ +
Sbjct: 350 -----------VELRIVDDEGNEL-PWDGKTVGELVVR---GPWVTGSYYKDPEKTEE-- 392
Query: 549 FTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVI 608
T+ G++ T D DE+GYI +T R DVI G +S+ LE+ +++HP V + AV+
Sbjct: 393 LTR-DGWFRTGDVAVIDEDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVV 451
Query: 609 GVPEPTKGEIPFCLYIKK 626
GVP GE P + + K
Sbjct: 452 GVPHEKWGERPLAVVVLK 469
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 4e-20
Identities = 87/376 (23%), Positives = 140/376 (37%), Gaps = 102/376 (27%)
Query: 256 ANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVG---GHIATLAWTMSVIYNMGQDD 312
+DP IL+TSGTTG+P+G V ++ A ++ + +
Sbjct: 1 PDDPALILHTSGTTGRPKG----------------VPLTHKNLLASARNIAKSHKL---- 40
Query: 313 VWWTASDMGWVV-----GHSYIC--YGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKV 365
T SD V H I L AG + V S+++ I ++V
Sbjct: 41 ---TPSDRCLNVMPLFHIHGLIVSLLATLLAGGSVVCPPKF-----SASKFWDDIAKYRV 92
Query: 366 NGLFTAPTALRVI-RREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLN 424
PT +++ + + LR++ A + EK F V +L
Sbjct: 93 TWYSAVPTIHQILLKTAKPNPGKPPP----RLRFIRSASAPLPPAVLDRLEKRFGVPVLE 148
Query: 425 HWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILP 484
+ TE H I ++ P LP
Sbjct: 149 AYGMTEAAHQIASN-------------------P------------------------LP 165
Query: 485 ESLRK--NVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQ 542
+RK +V + VEV I+ +DG P + G IV++ P + P
Sbjct: 166 PLVRKPGSVGRPAG------VEVAILDDDGRPLPPGQEGEIVIR---GPNVTAGYLNNP- 215
Query: 543 RFMKIYFTKFP-GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPD 601
+ F G++ T D GY DE+GY+++T R ++IN G ++S +E+V+L HP
Sbjct: 216 ---EANREAFRDGWFRTGDLGYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRHPA 272
Query: 602 VGDTAVIGVPEPTKGE 617
V + V GVP+ GE
Sbjct: 273 VAEAVVFGVPDELYGE 288
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 1e-19
Identities = 122/527 (23%), Positives = 187/527 (35%), Gaps = 111/527 (21%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
R+ ++ EL ++ + AG LAA+GV GD V + M + A +RLGA V
Sbjct: 10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWH 69
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE 227
F E+ LE + +V+IA + + + L + + S I R
Sbjct: 70 FKPEEIAYILEDSGARVLIAHADLLHG-----LASALPAGVTVLSVPTPPEIAAAYRISP 124
Query: 228 EAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGI 287
P I W+ LAQ+ + PV P ++YTSGTTG P KG+
Sbjct: 125 ALLTPPAGAIDWEGWLAQQEPYDGPPVPQ--PQSMIYTSGTTGHP------------KGV 170
Query: 288 LRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPL------AAGITSV 341
R A G G + GPL A G+ +
Sbjct: 171 RRAAPTPEQAAAAEQMRALIYGLKP------------GIRALLTGPLYHSAPNAYGLRAG 218
Query: 342 MYEGKPDRTP--DPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYL 399
G P DP + ++I H++ + PT IR + A+Y SLR++
Sbjct: 219 RLGGVLVLQPRFDPEELLQLIERHRITHMHMVPTMF--IRLLKLPEEVRAKYDVSSLRHV 276
Query: 400 FVAGEHCDHETKNWAEKSFNVTMLNHWW---------QTETGHSITAHCLGYQHDTVPPK 450
A C + K M+ WW TE+G A
Sbjct: 277 IHAAAPCPADVKR--------AMIE-WWGPVIYEYYGSTESGAVTFATS----------- 316
Query: 451 YSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRN 510
L PG GK P E+R +
Sbjct: 317 -EDALSHPGTVGK------------------AAPG-----------------AELRFVDE 340
Query: 511 DGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYI 570
DG E+G I ++ P T + P++ +I G+ + D GY D +GY+
Sbjct: 341 DGRPLPQGEIGEIYSRIAGNPDF--TYHNKPEKRAEI---DRGGFITSGDVGYLDADGYL 395
Query: 571 YVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
++ R D++ G + + +E V+ + P V D AV G+P+ GE
Sbjct: 396 FLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGE 442
|
Length = 509 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 4e-19
Identities = 107/521 (20%), Positives = 182/521 (34%), Gaps = 92/521 (17%)
Query: 103 VTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHS 162
VT ++Y +L V LAG L G+ GDRV + M E +V++LA R +
Sbjct: 37 VTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVV 96
Query: 163 VVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQ 222
+ E R + A +V++ + G + A + P +
Sbjct: 97 PLDPALPIAEQRVRSQAAGARVVLIDADGPH-----------DRAEPTTRWWPLTVNVGG 145
Query: 223 RRCVEEAELTPGYDILWDDALAQRLSHRCVP--VEANDPLYILYTSGTTGKPQGCSELRS 280
L+ D A + P + +D + I++T GTTG P+
Sbjct: 146 DSGPSGGTLSVHLD-----AATEPTPATSTPEGLRPDDAM-IMFTGGTTGLPKMVPWTH- 198
Query: 281 EDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITS 340
+IA+ + Y + D T + M GH G +AA + +
Sbjct: 199 ------------ANIASSVRAIITGYRLSPRDA--TVAVMPLYHGH-----GLIAALLAT 239
Query: 341 VMYEGK---PDRTP-DPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSL 396
+ G P R ++ I PT +++ ++ +T + +L
Sbjct: 240 LASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILL--ERAATEPSGRKPAAL 297
Query: 397 RYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLP 456
R++ ET + F ++ + TE H +T + T P STGL
Sbjct: 298 RFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLV 357
Query: 457 FPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECE 516
GR+ T ++RI+ +DG
Sbjct: 358 ------------------GRS-----------------------TGAQIRIVGSDGLPLP 376
Query: 517 PHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARD 576
+G + ++ T+ Y FT G+ T D G G + + R
Sbjct: 377 AGAVGEVWLRGT----TVVRGYLGDPTITAANFTD--GWLRTGDLGSLSAAGDLSIRGRI 430
Query: 577 DDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
++IN G ++S +E V+ SHP+V + AV GVP+ GE
Sbjct: 431 KELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGE 471
|
Length = 534 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 90.8 bits (225), Expect = 8e-19
Identities = 66/380 (17%), Positives = 127/380 (33%), Gaps = 60/380 (15%)
Query: 84 DRHVERGMAKKVALIHDSP-VTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
+ ++ A D+ + + +++TYAEL + + LA L ++GV G+ V I
Sbjct: 226 RLTIHLLFEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILAD 285
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202
E +V++LA ++ GA + + + A L LE ++P +++
Sbjct: 286 RSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLT--------------- 330
Query: 203 ILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYI 262
Q + PG + + + + YI
Sbjct: 331 -------------------QAHLRVDDVGLPGLALDDALSEIPDTDPIPQALLGDALAYI 371
Query: 263 LYTSGTTGKPQG-CSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMG 321
+YTSG+TG+P+G E R+ L + + DD + +
Sbjct: 372 IYTSGSTGQPKGVRIEHRAL-------------ANLLND-AGARFGLDADDRVLALASLS 417
Query: 322 WVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRE 381
+ I +G L G + + DP+ ++ + L P LR++
Sbjct: 418 FDASVFEI-FGALLEG--ARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLL--L 472
Query: 382 DKDSTLGAQYSTDSLRYLFVAGEHCDHET--KNWAEKSFNVTMLNHWWQTETGHSITAHC 439
+ LR L GE + + +LN + TE +
Sbjct: 473 LAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFP 532
Query: 440 LGYQHDTVPPKYSTGLPFPG 459
+ + ++ P G P
Sbjct: 533 ISAELESRVP---IGRPVAN 549
|
Length = 642 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 4e-18
Identities = 77/360 (21%), Positives = 123/360 (34%), Gaps = 71/360 (19%)
Query: 265 TSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVV 324
T GTTG P+ + R + AW +++ +G DV + V
Sbjct: 10 TGGTTGAPK-------------LARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVG 56
Query: 325 GHSYICYGPLAAGITSVMYEGKPDRTPDPS---QYYRVIHNHKVNGLFTAPTALRVIRRE 381
G PLA G T V+ P +P+ +++++ ++V L PT L + +
Sbjct: 57 GAIVTGLAPLARGATVVL--PTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQV 114
Query: 382 DKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLG 441
A S SLRY E E V ++ + TE + G
Sbjct: 115 PLG---DADIS--SLRYALTGAAPLPVEVARRFEAVTGVPVVEGYGMTEGTGVSAINPRG 169
Query: 442 YQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFT 501
S GL P VR+ +A
Sbjct: 170 GP----RRPGSVGLRLPY------------------TRVRVAK----------LDAGG-- 195
Query: 502 SVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDA 561
G +C P E+G + ++ P + Y G+ +T D
Sbjct: 196 --------ALGRDCAPGEVGVLAIRGP----NVFPGYLNDAHNAGARLE--DGWLNTGDL 241
Query: 562 GYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFC 621
G D +GY+++T R D+I GH + +E+ +L HP V A +G P+ GE+P
Sbjct: 242 GRIDADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVALAAAVGRPDAYAGELPVA 301
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 5e-18
Identities = 88/389 (22%), Positives = 140/389 (35%), Gaps = 100/389 (25%)
Query: 243 LAQRLSHR-CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWT 301
L L + +DP IL+TSG+ G P KG++ +A +
Sbjct: 130 LPPALLRLFLAGAKPDDPAVILFTSGSEGLP------------KGVVLSHRNLLANIDQI 177
Query: 302 MSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYY---R 358
+VI ++ +DV A + G + PL G+ V Y P+P
Sbjct: 178 AAVI-DLNTEDVLLGALPLFHAFGLTVTLLLPLLTGLRVVYY-------PNPLDAKKIAE 229
Query: 359 VIHNHKVNGLFTAPTALRVI-RREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKN-WAEK 416
+I ++K L PT LR R SLR + E T+ + EK
Sbjct: 230 LIRDYKATILCGTPTFLRGYARNAHP-------EDFSSLRLVVAGAEKLPEATRELFEEK 282
Query: 417 SFNVTMLNHWWQTETGHSITAHC-LGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDG 475
F + +L + TE I+ + +G + TV G P PG
Sbjct: 283 -FGIRILEGYGATECSPVISVNTPMGNKPGTV------GRPLPG---------------- 319
Query: 476 RAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPH-ELGRIVVKLPLPPGTM 534
+EVRI+ + E P E G ++V+ P M
Sbjct: 320 ---------------------------IEVRIVSPETHEELPIGEGGLLLVR---GPNVM 349
Query: 535 STLYKAPQRFMKIYFTKF-----PGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLST 589
S ++ T G+YDT D G DE+G++ + R + G +S
Sbjct: 350 SGYLNNEEK------TSEVEVLGDGWYDTGDIGKIDEDGFLTIVGRLKRFAKIGGEMVSL 403
Query: 590 SALEDVVLSH-PDVGDTAVIGVPEPTKGE 617
+A+E+++ P+ A + VP+ KGE
Sbjct: 404 TAVEELLSEILPEDSLHAAVEVPDEKKGE 432
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 87.8 bits (217), Expect = 5e-18
Identities = 118/525 (22%), Positives = 193/525 (36%), Gaps = 93/525 (17%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
+ +T++ ++V A L +GV GDRV I +P P+A++ T+ G I
Sbjct: 48 KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPL 107
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEAL--EISSCKP-----DYCII 220
+ REL +L + KVI+ V+ T + + I+ P Y +
Sbjct: 108 YTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFV 167
Query: 221 FQRRC-----VEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYIL-YTSGTTGKPQG 274
+++ V E+E LW+ + + VP + + L +L YT GTTG P
Sbjct: 168 QKKQSNLVVKVSESETIH----LWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFP-- 221
Query: 275 CSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPL 334
KG++ ++ + +YN + + ++ V + YG
Sbjct: 222 ----------KGVMLTHKNLVSNTLMGVQWLYNCKEGE------EVVLGVLPFFHVYGMT 265
Query: 335 AAGITSVMYEGKPDRTP--DPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYS 392
A S+M K P D + I HKV APT + +S L +Y
Sbjct: 266 AVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALL----NSPLLKEYD 321
Query: 393 TDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYS 452
S+R E + E ++ + TE+ S H VP S
Sbjct: 322 ISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTES--SPVTHSNFLWEKRVPG--S 377
Query: 453 TGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDG 512
G+P+P + +++ G
Sbjct: 378 IGVPWPDTEAMIMSL------------------------------------------ETG 395
Query: 513 SECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYV 572
P E+G IVVK P M + P+ + G+ T D GY DE+G+ YV
Sbjct: 396 EALPPGEIGEIVVK---GPQIMKGYWNKPEETAAVLQD---GWLHTGDVGYMDEDGFFYV 449
Query: 573 TARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
R D+I +G + +E+V+ H V + IGVP+P +GE
Sbjct: 450 KDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGE 494
|
Length = 563 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 6e-18
Identities = 56/181 (30%), Positives = 78/181 (43%), Gaps = 19/181 (10%)
Query: 108 RKVTYAELQEQVSLLAGSL-AAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFG 166
R ++Y EL E+ LAG L GV GDRVL+YM P+ +++ A +R A+ V
Sbjct: 34 RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNP 93
Query: 167 GFAARELCARLEHAKPKVIIAASC---GVEPNK---------VVRYKTILNEALEISSCK 214
EL + + +V I S V P V +Y L EI+
Sbjct: 94 MNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAV-- 151
Query: 215 PDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
P + R L PG + W +ALA L+ +D + YTSGTTG P+G
Sbjct: 152 PAWL----RAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKG 207
Query: 275 C 275
C
Sbjct: 208 C 208
|
Length = 546 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 7e-18
Identities = 96/536 (17%), Positives = 178/536 (33%), Gaps = 153/536 (28%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
T+ +L + + LA +L A G+ +G RV + E ++ + A + LGA +++
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 171 RELCARLEHAKPKVIIAASC----GVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCV 226
E +LE ++++ S + + + R + +S+
Sbjct: 61 NERTNQLEDLDVQLLLTDSLLEEKDFQADSLDRIEAAGRYETSLSASFNM---------- 110
Query: 227 EEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKG 286
+ +++TSGTTGKP K
Sbjct: 111 ------------------------------DQIATLMFTSGTTGKP------------KA 128
Query: 287 ILRPVGGHIATLAWTMSVIYNMG--QDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYE 344
+ H A+ + N+G +DD W + + + G S I + L G T + +
Sbjct: 129 VPHTFRNHYAS---AVGSKENLGFTEDDNWLLSLPLYHISGLS-ILFRWLIEGATLRIVD 184
Query: 345 GKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGE 404
+Q +I N +V + PT L + E ++LR + + G
Sbjct: 185 KF-------NQLLEMIANERVTHISLVPTQLNRLLDEG--------GHNENLRKILLGGS 229
Query: 405 HCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKY 464
A++ + + + + TET +T + + + G P G
Sbjct: 230 AIPAPLIEEAQQ-YGLPIYLSYGMTETCSQVTT----ATPEMLHARPDVGRPLAG----- 279
Query: 465 VNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIV 524
E++I + D E G I+
Sbjct: 280 --------------------------------------REIKI-KVDNKE----GHGEIM 296
Query: 525 VKLPLPPGTMSTLYKAPQRFMKIYFTKFP--------GYYDTMDAGYYDENGYIYVTARD 576
VK MK Y + G+++T D G D G++YV R
Sbjct: 297 VKGAN--------------LMKGYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRR 342
Query: 577 DDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDK 632
DD+I G + +E V+ HP + + V+ P+ G++P YI + +
Sbjct: 343 DDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPV-AYIVSESDISQ 397
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 2e-17
Identities = 119/549 (21%), Positives = 192/549 (34%), Gaps = 110/549 (20%)
Query: 99 HDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158
D P T TYAEL V+ A L ++GV GD V +P +PE ++ G
Sbjct: 53 LDRPET-----WTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWG----G 103
Query: 159 AIHSVVF---GGFAARELCARLEHAKPKVIIAASCGVEP--------NKVVRYKTILNEA 207
+ ++ L A KV++ G P +V+ L
Sbjct: 104 EAAGIANPINPLLEPEQIAELLRAAGAKVLVTL--GPFPGTDIWQKVAEVLAALPELRTV 161
Query: 208 LEISSCKPDYCIIFQRRCVEEAELTPGYDIL-WDDALAQRLSHRCV---PVEANDPLYIL 263
+E+ Y +R V IL +D LA++ R P+ +D
Sbjct: 162 VEVDL--ARYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYF 219
Query: 264 YTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWV 323
+T GTTG PK G +A AW +++ +G D + + V
Sbjct: 220 HTGGTTG------------MPKLAQHTHGNEVAN-AWLGALLLGLGPGDTVFCGLPLFHV 266
Query: 324 VGHSYICYGPLAAGITSVMYEGKPDRTPDPS---QYYRVIHNHKVNGLFTAPTALRVIRR 380
PLA G V+ P P +++++ +++N L PT + +
Sbjct: 267 NALLVTGLAPLARGAHVVL--ATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQ 324
Query: 381 EDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCL 440
D + SLRY E E + V ++ + TE A C+
Sbjct: 325 VPVDG-----HDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTE------ATCV 373
Query: 441 GYQHDTVPPKY-----STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQ 495
PP S GL P V +V+L D +R
Sbjct: 374 ---SSVNPPDGERRIGSVGLRLPYQR---VRVVIL---DDAGRYLR-------------- 410
Query: 496 NATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGY 555
+C E+G + + P + + Y ++ G+
Sbjct: 411 ------------------DCAVDEVGVLCIAGP----NVFSGYLEAAHNKGLWL--EDGW 446
Query: 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTK 615
+T D G D +GY ++T R D+I GH + +A+E+ +L HP V A +G P+
Sbjct: 447 LNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHA 506
Query: 616 GEIPFCLYI 624
GE+P Y+
Sbjct: 507 GELP-VAYV 514
|
Length = 632 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 3e-17
Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 41/230 (17%)
Query: 244 AQRLSH-------RCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGH-- 294
A+RL++ + + + +D Y++YTSG+TG+ PKG+ + H
Sbjct: 73 AERLAYMLEDSGAKLLLTDPDDLAYVIYTSGSTGR------------PKGV---MVEHRG 117
Query: 295 IATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPS 354
+ L + Y + D + + I + PL +G T V+ P+ DP
Sbjct: 118 LVNLLAWLQERYGLTAGDRVLQFASFSFDASVWEI-FPPLLSGATLVLAP--PEVLRDPE 174
Query: 355 QYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNW 413
++ H++ L P+ LR + + + L SLR + V GE E + W
Sbjct: 175 ALAELLREHRITVLHLVPSLLRALLDALEPAAL------PSLRLVIVGGEALPAELVRRW 228
Query: 414 AEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYST---GLPFPGY 460
E ++N + TET T ++ D + G P
Sbjct: 229 RELFPGARLVNAYGPTET----TVDVTYHEVDPDDLDGGSVPIGRPIANT 274
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 6e-17
Identities = 54/174 (31%), Positives = 77/174 (44%), Gaps = 14/174 (8%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
+TY EL E+V LA L ++G+ AGDRV I+ PE ++ LA + LGA+ ++
Sbjct: 44 EAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYST 103
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDY--CIIFQRRC 225
+L L ++ KVI VE + ++ LE D I R
Sbjct: 104 STPEQLAYILNESESKVIF-----VENQE---LLDLVLPVLEDCPKVVDLIVIIDLVREA 155
Query: 226 VEEAELT----PGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGC 275
VE L P I + L R P + +D I+YTSGTTG P+G
Sbjct: 156 VEAKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGV 209
|
Length = 613 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 6e-17
Identities = 112/515 (21%), Positives = 177/515 (34%), Gaps = 109/515 (21%)
Query: 109 KVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF 168
++TY+EL+ +V +A L A GV RV + P +A++++LA RLGA+ +++
Sbjct: 28 RLTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPRL 87
Query: 169 AA---RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRC 225
EL R E +IA V I ++
Sbjct: 88 KPAEIAELIKRGEMTA--AVIAVDAQVMD--------------AIFQSGSGVRVLA---- 127
Query: 226 VEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPK 285
+ G + P E P ++ YTSGTTG P+G + + +
Sbjct: 128 -LGDLVGLGEPESAGPPIEDP------PREPEQPAFVFYTSGTTGLPKGAVIPQRAAESR 180
Query: 286 GILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEG 345
L + G+ +V + V+G + LA T V
Sbjct: 181 -----------VLFMSTQAGLRHGRHNVVLGLMPLYHVIGFFAVLVAALALDGTYV---- 225
Query: 346 KPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEH 405
DP+ ++I +V LF PT L + + GA DSL ++ AG
Sbjct: 226 -VVEEFDPADALKLIEQERVTSLFATPTHLDAL----AAAAEGAPLKLDSLEHVTFAGAT 280
Query: 406 CDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYV 465
+ +N + TE +S+ Y D P+ T + PG+
Sbjct: 281 MPDAVLERVNQHLPGEKVNIYGTTEAMNSL------YMRD---PRTGTEMR-PGFFS--- 327
Query: 466 NIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECE---PHELGR 522
EVRI+R GS E E G
Sbjct: 328 --------------------------------------EVRIVRIGGSPDEALPNGEEGE 349
Query: 523 IVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINV 582
+VV T + PQ + G+Y T D D +G + + R DD+I
Sbjct: 350 LVVAAA--DATFTGYLNQPQATAE---KLQDGWYRTSDVAVVDPSGTVRILGRVDDMIIS 404
Query: 583 AGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
G + S +E V+ P V + VIG+P+ G+
Sbjct: 405 GGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQ 439
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 7e-17
Identities = 97/376 (25%), Positives = 144/376 (38%), Gaps = 102/376 (27%)
Query: 258 DPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVW-WT 316
DP I+YTSGTTG+P KG++ H A +++ + W WT
Sbjct: 89 DPALIIYTSGTTGRP------------KGVVLT---HGNLAANARALV------EAWRWT 127
Query: 317 ASDM-----------GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKV 365
ASD+ G + PL AG + DP + + ++
Sbjct: 128 ASDVLLHALPLHHVHGLFNA----LHCPLWAGASVEFL-----PRFDPQERDALRLLPRI 178
Query: 366 NGLFTAPTA-LRVIRREDKDSTLGAQYSTDSLRYLFVAGEH-CDHETKNWAEKSFNVTML 423
PT R++ E + A + +LR LFV+G E+ T+L
Sbjct: 179 TVFMGVPTIYTRLL--EHYEFDDAAAAAARNLR-LFVSGSAALPVPVLERWEERTGHTLL 235
Query: 424 NHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRIL 483
+ TETG +++ G + GLP PG
Sbjct: 236 ERYGMTETGMALSNPLDG-----ERRPGTVGLPLPG------------------------ 266
Query: 484 PESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPH-ELGRIVVKLPLPPGTMSTLYKAPQ 542
VEVRI+ DG E E+G I V+ P S + P+
Sbjct: 267 -------------------VEVRIVDEDGGEPLAAGEVGEIQVRGP---NVFSEYWNKPE 304
Query: 543 RFMKIYFTKFPGYYDTMDAGYYDENGYIYVTAR-DDDVINVAGHRLSTSALEDVVLSHPD 601
FT+ G++ T D G DE+GY + R DD+I G+++S +E+ +L HP
Sbjct: 305 A-TAEAFTE-DGWFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPG 362
Query: 602 VGDTAVIGVPEPTKGE 617
V + AVIGVP+P GE
Sbjct: 363 VAEVAVIGVPDPDWGE 378
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 1e-16
Identities = 75/270 (27%), Positives = 111/270 (41%), Gaps = 40/270 (14%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
T+ EL ++V+ LAG+L+ GV GDRVLI M E + S+LA LGAI
Sbjct: 41 NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAI------- 93
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTIL-NEALEISSCKPDYCIIFQRRCV 226
A + RL + ++ + CG VV + L A + P +
Sbjct: 94 --AVPVNFRLTPPEIAFLV-SDCGA---HVVVTEAALAPVATAVRDIVPLLSTVVVAGGS 147
Query: 227 EEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKG 286
+ + GY+ L +A +H V + + P I+YTSGTTG+P+G
Sbjct: 148 SDDSVL-GYEDLLAEAGP---AHAPVDIPNDSPALIMYTSGTTGRPKGA----------- 192
Query: 287 ILRPVGGHIATLAWTMSVIYNMGQD---DVWWTASDMGWVVGHSYICYGPLAAGITSVMY 343
V H M+ + G D DV + + + G + G L G +V+Y
Sbjct: 193 ----VLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPG-LLLGAPTVIY 247
Query: 344 EGKPDRTPDPSQYYRVIHNHKVNGLFTAPT 373
P DP Q V+ KV G+F P
Sbjct: 248 ---PLGAFDPGQLLDVLEAEKVTGIFLVPA 274
|
Length = 542 |
| >gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 3e-16
Identities = 88/341 (25%), Positives = 148/341 (43%), Gaps = 55/341 (16%)
Query: 30 DAYRKSIEAPESFWTDV-GNMA-TWSKKWDRILDNSDQ--PFTKWFVGGEINACYNAIDR 85
+ R S+E PE +W+ V ++ +S ILD SD+ P +W G +N +
Sbjct: 124 EFQRFSVENPEVYWSIVLDELSLVFSVPPRCILDTSDESNPGGQWLPGAVLNVAECCLTP 183
Query: 86 HVERGMAKKVALI------HDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLI 139
+ +A+I D PV ++T +EL+ QVS +A +L A+G GD + I
Sbjct: 184 KPSK-TDDSIAIIWRDEGSDDLPV----NRMTLSELRSQVSRVANALDALGFEKGDAIAI 238
Query: 140 YMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVR 199
MP+ A++ LA + G + + FA E+ RL+ +K K I V K +
Sbjct: 239 DMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSI- 297
Query: 200 YKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDP 259
+ + +E + P ++ +L G D+ WDD LA R + P E
Sbjct: 298 --PLYSRVVEAKA--PKAIVLPADGKSVRVKLREG-DMSWDDFLA-RANGLRRPDEYK-A 350
Query: 260 LY--------ILYTSGTTGKPQG-----CSELRSEDQPKGILRPVGGHIATLAWTMSVIY 306
+ IL++SGTTG+P+ + LR+ A AW
Sbjct: 351 VEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRA---------------AADAWAHL--- 392
Query: 307 NMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKP 347
++ + D+ +++GW++G ++ Y L G T +Y G P
Sbjct: 393 DIRKGDIVCWPTNLGWMMGP-WLVYASLLNGATLALYNGSP 432
|
Length = 728 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 7e-16
Identities = 76/319 (23%), Positives = 130/319 (40%), Gaps = 48/319 (15%)
Query: 85 RHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLI 144
R +R +AL+ R T+ E+ +V LA +LAA GV GDR+L++
Sbjct: 19 RFPDR-----IALVWGD------RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNC 67
Query: 145 PEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTIL 204
+ SM A RLGA+ E+ E + + +I + E VR
Sbjct: 68 NQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVR----- 122
Query: 205 NEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILY 264
+ +++ + A Y+ L L R V+ +DP + +
Sbjct: 123 AASPDLTHVVA----------IGGARAGLDYEALVARHLGAR--VANAAVDHDDPCWFFF 170
Query: 265 TSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVV 324
TSGTTG+P+ + + + Q + + H+A L + + D + +
Sbjct: 171 TSGTTGRPK--AAVLTHGQMAFV---ITNHLADL------MPGTTEQDASLVVAPLSHGA 219
Query: 325 GHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKD 384
G +C +A G +V+ P DP++ + ++ H+V LFT PT L+++ E
Sbjct: 220 GIHQLC--QVARGAATVLL---PSERFDPAEVWALVERHRVTNLFTVPTILKML-VEHPA 273
Query: 385 STLGAQYSTDSLRYLFVAG 403
+Y SLRY+ AG
Sbjct: 274 V---DRYDHSSLRYVIYAG 289
|
Length = 528 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 7e-16
Identities = 123/535 (22%), Positives = 178/535 (33%), Gaps = 95/535 (17%)
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
+D H R VALI D R ++ AEL+ V LA LAA GV GDRV +++P
Sbjct: 16 LDAHA-RARPDAVALI-DED-----RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLP 68
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPN-KVVRYK 201
E +V LA RLGA V + + E+ L + + ++ V P K + +
Sbjct: 69 NCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLV-----VWPGFKGIDFA 123
Query: 202 TILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDP-- 259
IL + P I + + AL A DP
Sbjct: 124 AILAAV-PPDALPPLRAIAVVDDAADATPAPAPGARVQLFALPDPAPPAAAGERAADPDA 182
Query: 260 LYILY-TSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTAS 318
+L+ TSGTT P+ L Q +LR H A ++ Y V A
Sbjct: 183 GALLFTTSGTTSGPK----LVLHRQ-ATLLR----H----ARAIARAYGYDPGAVLLAAL 229
Query: 319 DMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVI 378
V G S + G LA G V D ++ R + H+V F LR I
Sbjct: 230 PFCGVFGFSTLL-GALAGGAPLVCEP-----VFDAARTARALRRHRVTHTFGNDEMLRRI 283
Query: 379 RREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAH 438
T G + S R A SF
Sbjct: 284 LD-----TAGERADFPSARLFGFA--------------SF-------------------- 304
Query: 439 CLGYQHDTVPPKYSTGLPFPG-YDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNA 497
+ + G+P G Y V ++ P S+R G
Sbjct: 305 -APALGELAALARARGVPLTGLYGSSEVQALVALQ-------PATDPVSVRIE---GGGR 353
Query: 498 THFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYY 556
VR DG+ E G I ++ P M P + T GY+
Sbjct: 354 PASPEARVRARDPQDGALLPDGESGEIEIR---APSLMRGYLDNPDATARA-LTD-DGYF 408
Query: 557 DTMDAGYY-DENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGV 610
T D GY + ++Y T R D + + G ++ + +E + + P V V+G
Sbjct: 409 RTGDLGYTRGDGQFVYQT-RMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGA 462
|
Length = 540 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 1e-15
Identities = 76/297 (25%), Positives = 115/297 (38%), Gaps = 59/297 (19%)
Query: 94 KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153
+ A+++ R+ TY E ++ LA +L+ +G+ GD V + P P + +
Sbjct: 20 RTAVVYGD------RRYTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFG 73
Query: 154 TVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSC 213
GA+ + A ++ L H++ KV+ + ++ EAL + S
Sbjct: 74 VPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQ---------EFLSLAEEALALLST 124
Query: 214 KP--DYCIIFQRRCVEEAELTPGYDILWD---DALAQRLSHRCVPVEANDPLYILYTSGT 268
K D II E++E D+L D L P + DP+ + YTSGT
Sbjct: 125 KEIIDTEIIVISPAAEDSEEGDYEDLLAGGDPDPLPIP------PDDEWDPISLNYTSGT 178
Query: 269 TGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYN-MGQDDVW-WTASDM---GWV 323
TG PKG++ G A L +VI M V+ WT GW
Sbjct: 179 TG------------NPKGVVYTHRG--AYLNALGNVIEWGMPDRPVYLWTLPMFHCNGW- 223
Query: 324 VGHSYICY--GPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVI 378
C+ A G T V R D Y +I HKV L APT L ++
Sbjct: 224 ------CFPWAITAVGGTHVCL-----RKVDAPAIYDLIEKHKVTHLCGAPTVLNML 269
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 1e-15
Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 16/178 (8%)
Query: 109 KVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF 168
+ T+ +L + V LA L A+GV GDRV I+ P E +++ AT R+GAI + +
Sbjct: 45 RYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAY 104
Query: 169 AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEAL-EISSCKPDYCII----FQR 223
A EL L + + +I A + K Y +L E L ++ +P R
Sbjct: 105 RASELEYALGQSGVRWVICA----DAFKTSDYHAMLQELLPGLAEGQPGALACERLPELR 160
Query: 224 RCVEEAELTPGYDILWDDALA-------QRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
V A P + W + A + L+ R ++ +DP+ I YTSGTTG P+G
Sbjct: 161 GVVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKG 218
|
Length = 558 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 1e-15
Identities = 87/373 (23%), Positives = 135/373 (36%), Gaps = 87/373 (23%)
Query: 255 EANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVW 314
E +D I YTSGTTG P+GC + +AT A + + D V
Sbjct: 82 ELDDVAVIPYTSGTTGLPKGC------------MHTHRTVLATAA-ASAAWSGLTPDSVL 128
Query: 315 WTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTA 374
+ V G P+ G T V+ + DR R I ++V T
Sbjct: 129 LAFLPLFHVAGMQGSMNAPIYTGATLVLL-TRWDREAAA----RAIERYRVTHWTNIVTM 183
Query: 375 LRVIRREDKDSTLG-AQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNH---WWQTE 430
+ + + A Y SL+ + G AE+ +T L + + TE
Sbjct: 184 VVDLL-----AHPRFADYDLSSLKVVGGGGAAL---PPAVAERLKALTGLLYEEGYGLTE 235
Query: 431 TGHSITAHCLGYQHDTVP--PKYST-GLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESL 487
T H+ T H P PK G+P G D + ++ PE+
Sbjct: 236 T-HTCT-------HFNPPDRPKPQCLGIPVFGTDARVID-----------------PETG 270
Query: 488 RKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKI 547
E P E G IVV+ P + P+ +
Sbjct: 271 E-------------------------ELPPGEEGEIVVR---GPQVFKGYWNRPEATAES 302
Query: 548 YFT-KFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTA 606
+ ++ T D GY DE GY + R +INV+G+++ + +E ++ HP V +
Sbjct: 303 FIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVC 362
Query: 607 VIGVPEPTKGEIP 619
VIG P+P +GE+
Sbjct: 363 VIGRPDPRRGEVV 375
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 1e-15
Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
+++TYAEL +V A +LAA+G+ GDRV I+ P P +++ L ++ GA+ +
Sbjct: 29 QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTR 88
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKP--DYCIIFQRRC 225
+ A E L K + L ++ P ++ +I +
Sbjct: 89 YTADEAAYILARGDAKALFVLG------------LFLGVDYSATTRLPALEHVVICE--- 133
Query: 226 VEEAELTPGYDILWDDALAQ-RLSHRCVPVEANDPLYILYTSGTTGKPQG 274
EE + + D LA + R V+ +D IL+TSGTTG+P+G
Sbjct: 134 TEEDDPHTEKMKTFTDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKG 183
|
Length = 513 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 3e-15
Identities = 75/297 (25%), Positives = 111/297 (37%), Gaps = 47/297 (15%)
Query: 86 HVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIP 145
V + +VAL+ R++TYAEL+E+ + LA L A G+ GD V IY
Sbjct: 11 AVADAVPDRVALVCGD------RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRI 64
Query: 146 EAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILN 205
E + +ML + A+ V + EL L+ + ++ + +
Sbjct: 65 EYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYER---------EFAPRVA 115
Query: 206 EALEISSCKPDYCIIFQRRCVE----EAELTPGYDILWDDALAQRLSHRCVPVEANDPLY 261
E L K + VE L D ++DALA R + D LY
Sbjct: 116 EVLP-RLPKLRTLV-----VVEDGSGNDLLPGAVD--YEDALAAGSPERDFGERSPDDLY 167
Query: 262 ILYTSGTTGKPQGCSELRSED----QPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317
+LYT GTTG P+G R ED G G I ++ G + A
Sbjct: 168 LLYTGGTTGMPKGVM-WRQEDIFRVLLGGRDFATGEPIEDE-EELAKRAAAGPGMRRFPA 225
Query: 318 SDM--G---WVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLF 369
+ G W + L +G T V+ PD D + +R I KVN +
Sbjct: 226 PPLMHGAGQWAA------FAALFSGQTVVLL---PDVRFDADEVWRTIEREKVNVIT 273
|
Length = 533 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 4e-15
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 502 SVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDA 561
E++I DG P E G IVVK P + + G++ T D
Sbjct: 315 PCELKI-EKDGVVVPPFEEGEIVVK---GPNVTKGYLNREDATRETFQD---GWFKTGDI 367
Query: 562 GYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFC 621
GY DE G++YV R D+I G + + +E+V+LSHP V + V+GVP+ G++P
Sbjct: 368 GYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVP-V 426
Query: 622 LYIKKRIPLDK 632
++ K + +
Sbjct: 427 AFVVKSGEVTE 437
|
Length = 483 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 4e-15
Identities = 70/291 (24%), Positives = 101/291 (34%), Gaps = 59/291 (20%)
Query: 94 KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153
K AL+ R TYAEL V+ +A +L +G+ GDRV + LA
Sbjct: 27 KTALVFGD------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLA 80
Query: 154 TVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSC 213
R GA+H V EL L+H+ + + AL +
Sbjct: 81 CARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPT---------AEAALALLPV 131
Query: 214 KPDYCIIFQRRCVEEAELTPGYDILWDDAL-AQRLSHRCVPVEANDPLYILYTSGTTGKP 272
V PG + + D A ++ V + +D ILYTSGT P
Sbjct: 132 DT-----LILSLVLGGREAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLP 186
Query: 273 QGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHS---YI 329
+G + H A +A +S I +A D + H+ Y
Sbjct: 187 KGA---------------MLTHRALIAEYVSCIVAGD-----MSADD---IPLHALPLYH 223
Query: 330 C------YGP-LAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPT 373
C GP L G T+V+ + PDP R I ++ F PT
Sbjct: 224 CAQLDVFLGPYLYVGATNVILDA-----PDPELILRTIEAERITSFFAPPT 269
|
Length = 523 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 5e-15
Identities = 71/342 (20%), Positives = 114/342 (33%), Gaps = 89/342 (26%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
+ +Y E++EQV LA L GV GD V + +P +++ A V GA + G
Sbjct: 482 YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTG 541
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE 227
+ L LE A+P ++I + + D +
Sbjct: 542 YPDDRLKMMLEDARPSLLITTA-------------------DQLPRFADVPDLT------ 576
Query: 228 EAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGI 287
+ Y+ A L + + YI++TSG+TG+P+G
Sbjct: 577 ----SLCYNAPLAPQGAAPL----QLSQPHHTAYIIFTSGSTGRPKGV------------ 616
Query: 288 LRPVGGHIAT---LAWTMSVIYNMGQDDV----------------WWTASDMGWVVGHSY 328
+ G A L W M Y + DDV +W
Sbjct: 617 ---MVGQTAIVNRLLW-MQNHYPLTADDVVLQKTPCSFDVSVWEFFW------------- 659
Query: 329 ICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLG 388
P AG VM +P+ DP + + V P+ L + G
Sbjct: 660 ----PFIAGAKLVM--AEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVAS--LTPEG 711
Query: 389 AQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTE 430
A+ S SLR +F +GE + ++ + N + TE
Sbjct: 712 ARQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTE 753
|
Length = 1296 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 2e-14
Identities = 68/296 (22%), Positives = 108/296 (36%), Gaps = 89/296 (30%)
Query: 94 KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153
+AL++ R +TYAEL E+ + LA L A GV GD V + + PE +V++LA
Sbjct: 3 AIALVYGD------RSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILA 56
Query: 154 TVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSC 213
++ GA + L+ A P L LE S
Sbjct: 57 ILKAGAAY-------------VPLDPAYP------------------AERLAFMLEDSGA 85
Query: 214 KPDYCIIFQRRCVEEAELT-PGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKP 272
+ ++ A IL ++ A+ V+A+D Y++YTSG+TG+P
Sbjct: 86 R---VLLTDESLAPLARADQLPLVILEEELDAEDAGPPAPAVDADDLAYVMYTSGSTGRP 142
Query: 273 QG-CSELRSEDQPKGILRPVGG-------------HIATLAWTMSVIYNMGQDDVWWTAS 318
+G R G++R V ++ L++ S ++W
Sbjct: 143 KGVAVPHR------GVVRLVRNTNYIALDPDDRFLQLSPLSFDASTF------EIW---- 186
Query: 319 DMGWVVGHSYICYGPLAAGITSVMYEGKPDRTP-DPSQYYRVIHNHKVNGLF-TAP 372
G L G V+ T DP + R+I V L+ TA
Sbjct: 187 -------------GALLNGGRLVLI---DKETLLDPDRLARLIAEQGVTVLWLTAA 226
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 4e-14
Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 21/135 (15%)
Query: 500 FTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFM-------KIYFTKF 552
F +V+VRI G E + E+G + VK +PQ FM
Sbjct: 313 FHNVQVRICNEAGEEVQKGEIGTVYVK-------------SPQFFMGYIIGGVLARELNA 359
Query: 553 PGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPE 612
G+ D GY DE G+IY+ R+ ++I G + +E V+ HP V + VIGVP+
Sbjct: 360 DGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPD 419
Query: 613 PTKGEIPFCLYIKKR 627
GE P IK
Sbjct: 420 SYWGEKP-VAIIKGS 433
|
Length = 487 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 4e-14
Identities = 66/313 (21%), Positives = 115/313 (36%), Gaps = 66/313 (21%)
Query: 94 KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153
A+I + +TY EL + + +A +L A GV+ GD V + MP E IV++L
Sbjct: 3 ATAVIDGA------GTLTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLG 56
Query: 154 TVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSC 213
+ GA + V I E R IL A
Sbjct: 57 ILLAGAAY----------------------VPIDPDQPAE-----RRAAILARA----GA 85
Query: 214 KPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQ 273
+ ++ + E + D A A+ + V+ +D Y+++TSG+TG+
Sbjct: 86 R---AVLTDPGLAQPEEAPDLLVVADDAAAAESPAPPPPRVDPDDLAYVIFTSGSTGE-- 140
Query: 274 GCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGW---VVGHSYIC 330
PKG++ + T+ + +G D S + + V Y
Sbjct: 141 ----------PKGVMITHRAAVNTILDVNRR-FGVGPADRVLALSALHFDLSV----YDI 185
Query: 331 YGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQ 390
+G L+AG V+ + R DP + ++ H V + P + ++ A
Sbjct: 186 FGALSAGAALVLPD--EARRRDPDHWAELVQRHGVTVWNSVPALMDML----LTYAEDAA 239
Query: 391 YSTDSLRYLFVAG 403
SLR + ++G
Sbjct: 240 RLLPSLRLVMLSG 252
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 7e-14
Identities = 123/554 (22%), Positives = 195/554 (35%), Gaps = 134/554 (24%)
Query: 81 NAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIY 140
+A+ R+ + AL+ ++TY +L +++S + A+G+ GD V +
Sbjct: 20 SALKRY-----PDRPALVLGD------TRLTYGQLADRISRYIQAFEALGLGTGDAVALL 68
Query: 141 MPLIPEAIVSMLATVRLG----AIHSVVFGGFAARELCA-RLEHAKPKVIIAASCGVEPN 195
PE ++++ A G A+H + + + A LE A +I V+P
Sbjct: 69 SLNRPEVLMAIGAAQLAGLRRTALHPL-----GSLDDHAYVLEDAGISTLI-----VDPA 118
Query: 196 KVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVE 255
V AL + + P + V + D+L A A+ V
Sbjct: 119 PFV------ERALALLARVPSLKHVLTLGPVPDGV-----DLL--AAAAKFGPAPLVAAA 165
Query: 256 A-NDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVW 314
D + YT GTTGK PKG++ H + TM+ I
Sbjct: 166 LPPDIAGLAYTGGTTGK------------PKGVMGT---HRSI--ATMAQI--------- 199
Query: 315 WTASDMGWVVGHSYICYGPL--AAGIT---SVMYEGKPDRTP--DPSQYYRVIHNHKVNG 367
++ W ++ PL A G +++ G DP++ R I ++
Sbjct: 200 -QLAEWEWPADPRFLMCTPLSHAGGAFFLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITA 258
Query: 368 LFTAPTALRVIRREDKDSTLGAQYSTD--SLRYLFVAGEHCDHETKNWAEKSFNVTMLNH 425
F PT + + T D SL ++ A + F +
Sbjct: 259 TFLVPTMIYALLDHPDLRT------RDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQY 312
Query: 426 WWQTETGHSITAHCLGYQHDTVPPKY--STGLPFPGYDGKYVNIVMLNWLDGRAHCVRIL 483
+ QTE IT + HD PK S G P PG V +L
Sbjct: 313 YGQTEAPMVIT-YLRKRDHDPDDPKRLTSCGRPTPGLR------------------VALL 353
Query: 484 PESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQR 543
E R+ V +G E+G I V+ PL M + P+
Sbjct: 354 DEDGRE-VAQG------------------------EVGEICVRGPL---VMDGYWNRPEE 385
Query: 544 FMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVG 603
+ G+ T D DE+G+ Y+ R D+I G + +EDV+ HP V
Sbjct: 386 TAE---AFRDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVA 442
Query: 604 DTAVIGVPEPTKGE 617
AVIGVP+ GE
Sbjct: 443 QVAVIGVPDEKWGE 456
|
Length = 524 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 1e-13
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 24/120 (20%)
Query: 503 VEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFP--------- 553
VE R++ +DG++ P E+G IV +++PQ M Y+ P
Sbjct: 350 VETRVVDDDGNDVAPGEVGEIV-------------HRSPQ-LMLGYWDD-PEKTAEAFRG 394
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G++ + D G DE GYI V R D+I G +++ +E+ + +HP V + AVIG+P+P
Sbjct: 395 GWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDP 454
|
Length = 523 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 2e-13
Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 504 EVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGY 563
EVR++ DG+ P E+G ++ + P T+ Y+AP+ + + G+Y + D
Sbjct: 369 EVRVVDADGNPVAPGEVGELLTRGPY---TIRGYYRAPEHNARAFDAD--GFYRSGDLVR 423
Query: 564 YDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLY 623
D +GY+ V R D IN G +++ +E+++L HP V D A++ +P+ GE C +
Sbjct: 424 RDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGE-KSCAF 482
Query: 624 IKKRIP 629
I + P
Sbjct: 483 IVVKEP 488
|
Length = 542 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 2e-13
Identities = 118/514 (22%), Positives = 177/514 (34%), Gaps = 111/514 (21%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFG-GFA 169
T+ EL E+ LA +L A+ + V I + ++LA R+GA ++ FA
Sbjct: 70 TWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGA-DILLLNTSFA 128
Query: 170 ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCV--- 226
L + +I + ++ AL + P R V
Sbjct: 129 GPALAEVVTREGVDTVIYDE---------EFSATVDRAL---ADCPQ-----ATRIVAWT 171
Query: 227 -EEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPK 285
E+ +LT ++L QR + IL TSGTTG P+G RS
Sbjct: 172 DEDHDLT--VEVLIAAHAGQRPEPT--GRKGR---VILLTSGTTGTPKGAR--RSGPGGI 222
Query: 286 GILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEG 345
G L+ + A +VI + M G S + LAA + +
Sbjct: 223 GTLKAILDRTPWRAEEPTVI-----------VAPMFHAWGFSQLV---LAASLACTIVT- 267
Query: 346 KPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEH 405
R DP +I H+ GL P R D + + +YS SLR+ +G
Sbjct: 268 --RRRFDPEATLDLIDRHRATGLAVVPVMFD--RIMDLPAEVRNRYSGRSLRFAAASGSR 323
Query: 406 CDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYV 465
+ F + N++ TE G TA
Sbjct: 324 MRPDVVIAFMDQFGDVIYNNYNATEAGMIATAT--------------------------- 356
Query: 466 NIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVV 525
P LR T E+RI+ D E E+G I V
Sbjct: 357 ------------------PADLRAAPDTAGRPAEGT--EIRILDQDFREVPTGEVGTIFV 396
Query: 526 KLPLPPGTMSTLYKAPQRFMKIYFTK--FPGYYDTMDAGYYDENGYIYVTARDDDVINVA 583
+ T Y + TK G+ + D GY DENG ++V RDD++I
Sbjct: 397 R----NDTQFDGYTSGS-------TKDFHDGFMASGDVGYLDENGRLFVVGRDDEMIVSG 445
Query: 584 GHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
G + +E + +HPDV + AVIGV + G+
Sbjct: 446 GENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQ 479
|
Length = 537 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 2e-13
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 19/142 (13%)
Query: 484 PESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPL--------PPGTMS 535
P+S+ K +P + EV ++R DGSEC P E G +V + L P T
Sbjct: 329 PDSIGKAIP---------NAEVLVLREDGSECAPGEEGELVHRGALVAMGYWNDPEKTAE 379
Query: 536 TLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDV 595
P +++ + + + D DE G++Y R D++I +G+R+S + +E+V
Sbjct: 380 RFRPLPPFPGELHLPELAVW--SGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEV 437
Query: 596 VLSHPDVGDTAVIGVPEPTKGE 617
+ V + GVP+PT G+
Sbjct: 438 AYATGLVAEAVAFGVPDPTLGQ 459
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 5e-13
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 504 EVRIIRNDGSECEPHELGRIVVKLPLPPGT-MSTLYKAPQRFMKIYFTKFPGYYDTMDAG 562
E I + E+G I +K +P T Y P+ K+ + G+ T D G
Sbjct: 350 EAEIRDDHNRPLPAGEIGEICIK-GVPGKTIFKEYYLDPKATAKVL--EADGWLHTGDTG 406
Query: 563 YYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
Y DE G+ Y R ++I G +S LE+++ +HP + D V+G+ + + E
Sbjct: 407 YVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDE 461
|
Length = 517 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 5e-13
Identities = 58/182 (31%), Positives = 88/182 (48%), Gaps = 28/182 (15%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
TY E E+V LA L A+G+ GDRV I+ P +PE +++ AT ++GAI + +
Sbjct: 45 TYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRL 104
Query: 171 RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNE-ALEISSCKPDY----------CI 219
E LE+A + A + K Y +L E A E+++C+P +
Sbjct: 105 SE----LEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRV 160
Query: 220 IFQRRCVEEAELTPGYDILWDDALA-------QRLSHRCVPVEANDPLYILYTSGTTGKP 272
IF E PG + +D+ LA L+ R ++ +DP+ I YTSGTTG P
Sbjct: 161 IFL-----GDEKHPGM-LNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFP 214
Query: 273 QG 274
+G
Sbjct: 215 KG 216
|
Length = 559 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 7e-13
Identities = 89/384 (23%), Positives = 134/384 (34%), Gaps = 102/384 (26%)
Query: 258 DPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGH--IATLAWTMSVIYNMGQDDVWW 315
D LY+LYT GTTG P+G R ED I R + G AT T+ +
Sbjct: 4 DDLYMLYTGGTTGMPKGVM-WRQED----IFRVLLGGPDFATGEPTLEELAKQVAA---- 54
Query: 316 TASDMGWVVG----H---SYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGL 368
+ ++ H ++ L AG +V+ PD DP + +R + H+VN L
Sbjct: 55 GGAGTRFLPACPLMHGAGQWLALSALFAG-GTVVLL--PDDKFDPDRVWRTVEKHRVNTL 111
Query: 369 ------FTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKN-WAEKSFNVT 421
F P L + + Y SLR + +G E K E N+
Sbjct: 112 VIVGDAFARPL-LEALEAAGR-------YDLSSLRAISSSGAMWSPEVKQGLLELLPNLA 163
Query: 422 MLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVR 481
+++ +ETG G +TG G V
Sbjct: 164 LVDALGASETGG------GGSSVSRAGGASATGKFELG-----------------PDTVV 200
Query: 482 ILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEP--HELGRIVVKLPLPPGTMSTLYK 539
+ DGSE P E+G I +P G YK
Sbjct: 201 LDE--------------------------DGSEVPPGSGEVGWIARGGRVPLG----YYK 230
Query: 540 APQRFMKIYFTK------FPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALE 593
P++ K + PG + ++A G I + R IN G ++ +E
Sbjct: 231 DPEKTAKTFREIDGVRYAVPGDFARVEAD-----GTITLLGRGSVCINTGGEKVFPEEVE 285
Query: 594 DVVLSHPDVGDTAVIGVPEPTKGE 617
+ + +HPDV D V+GVP+ G+
Sbjct: 286 EALKAHPDVADALVVGVPDERWGQ 309
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 8e-13
Identities = 73/387 (18%), Positives = 129/387 (33%), Gaps = 120/387 (31%)
Query: 254 VEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVG-GHIAT-LAWTMSVIYNMGQD 311
+ +D YIL+TSG+TGKP KG+ + ++A+ L W M +++ +
Sbjct: 94 ADPDDLAYILFTSGSTGKP------------KGV--QISHANLASFLDW-MVEDFDLTEG 138
Query: 312 DVW-------WTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHK 364
DV+ + S + LA+G T +Y ++ DP + + H
Sbjct: 139 DVFSNQAPFSFDLSVFDL--------FPALASGAT--LYVIPKEQIADPLALFEFLKEHG 188
Query: 365 VNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLN 424
+ + P+ ++ L + S SLR GE +
Sbjct: 189 LTVWVSVPSFASLLLL---SRELNPE-SLPSLRTFLFCGE------------VLPKKLAK 232
Query: 425 HWWQ-------------TE-----TGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVN 466
+ TE T + +T L +++ +P G P PG
Sbjct: 233 ALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLS-RNEPLP----IGYPKPGLRAL--- 284
Query: 467 IVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVK 526
I+ DG P E G +V+
Sbjct: 285 ----------------------------------------ILDEDGRPVPPGEEGELVI- 303
Query: 527 LPLPPGTMSTLYKAPQRFMKIYFTKFP-GYYDTMDAGYYDENGYIYVTARDDDVINVAGH 585
P P++ K +F +Y T D Y +++G + R D I + G+
Sbjct: 304 --AGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLLVYLGRKDFQIKLHGY 361
Query: 586 RLSTSALEDVVLSHPDVGDTAVIGVPE 612
R+ +E + + P V + V+ VP+
Sbjct: 362 RIELEEIEAALRALPGVEEAVVLPVPK 388
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 1e-12
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 501 TSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMD 560
T +EV+I ++G E P E G I V + P + Y P+ K + G++ T D
Sbjct: 347 TGMEVQIQDDEGRELPPGETGEICV---IGPAVFAGYYNNPEANAKAFRD---GWFRTGD 400
Query: 561 AGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEI 618
G+ D G++Y+T R D+ G + +E+ +L+HP V + AV+GVP+P GE+
Sbjct: 401 LGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEV 458
|
Length = 528 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 1e-12
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 504 EVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGY 563
EVR++ + G+ P E G ++ + P T YKAP+ F G+Y T D
Sbjct: 362 EVRVVDDHGNPVAPGETGMLLTRGPY---TFRGYYKAPEHNAAA-FDA-EGFYYTGDLVR 416
Query: 564 YDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLY 623
GYI V R D IN G +++ +E+++L+HP V D A++ +P+ GE C +
Sbjct: 417 LTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKS-CAF 475
Query: 624 IKKRIP 629
I R P
Sbjct: 476 IVVRDP 481
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 4e-12
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
R+ TYAEL E+V+ LA L A+GV GDRV + + PE + + A +LGA+ +
Sbjct: 2 RRYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTA 61
Query: 168 FAARELCARLEHAKPKVIIAASCGV 192
EL L+H+ ++I+ + +
Sbjct: 62 LRGEELAHILDHSGARLIVVDTAAI 86
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 4e-12
Identities = 63/191 (32%), Positives = 87/191 (45%), Gaps = 34/191 (17%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
TYAEL +QV A L A+GV GDRV I +P P+ IV+ A +RLGA+ VV
Sbjct: 56 ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAV--VVEHN 113
Query: 168 --FAARELCARLEHAKPKVII----AASCGVEPNKVVRYKTILNEALEISSCKPDYCIIF 221
+ A EL E +V I A + +TI+ ++ + + P +
Sbjct: 114 PLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIV--SVNMIAAMP----LL 167
Query: 222 QRRCVE---------EAELT---PG---YDILWDDAL---AQRLSHRCVPVEANDPLYIL 263
QR + A LT PG ++ L D A+ +SH +D IL
Sbjct: 168 QRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHP--RPTPDDVALIL 225
Query: 264 YTSGTTGKPQG 274
YTSGTTGKP+G
Sbjct: 226 YTSGTTGKPKG 236
|
Length = 573 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 5e-12
Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 488 RKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKI 547
RK V G T VE +I+ G E E+G ++V+ P M Y P+
Sbjct: 332 RKTVA-GTIGTAIAGVENKIVNELGEEVPVGEVGELLVR---GPNVMKGYYDDPEA---- 383
Query: 548 YFT----KFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVG 603
T G+ T D G DE GY+Y+ R D+ V G + + +E+V+ HP V
Sbjct: 384 --TAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVA 441
Query: 604 DTAVIGVPEPTKGE 617
+ AVIGVP+ GE
Sbjct: 442 EAAVIGVPDERLGE 455
|
Length = 513 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 5e-12
Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 18/182 (9%)
Query: 94 KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153
AL+H R +TYA L E+V LA L +G++ G+RV IY+ E + +M
Sbjct: 16 ATALVHHD------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFG 69
Query: 154 TVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSC 213
G + + A ++ L ++++ +S ++ + C
Sbjct: 70 AALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLH-----------PALPGC 118
Query: 214 KPDYCIIFQRRCVEEAELTPGYDIL-WDDALAQRLSHRCVPVEANDPLYILYTSGTTGKP 272
+I +E PG + W LA + PV +D ILYTSG+TG+P
Sbjct: 119 HDLRTLIIVGDPAHASEGHPGEEPASWPKLLALGDADPPHPVIDSDMAAILYTSGSTGRP 178
Query: 273 QG 274
+G
Sbjct: 179 KG 180
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 5e-12
Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 31/144 (21%)
Query: 484 PESLRKN------VPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMS-- 535
PE L + PKG V V+I+ +G+E +GRI V
Sbjct: 368 PEDLAEAPGTVGRPPKG--------VTVKILDENGNEVPRGVVGRIFVG-----NGFPFE 414
Query: 536 --TLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALE 593
T + Q G + D GY+DE+G ++V RDDD+I G + + +E
Sbjct: 415 GYTDGRDKQI--------IDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVE 466
Query: 594 DVVLSHPDVGDTAVIGVPEPTKGE 617
D++ HPDV + AVIGV + G+
Sbjct: 467 DLLAGHPDVVEAAVIGVDDEEFGQ 490
|
Length = 549 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 5e-12
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 502 SVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDA 561
S E++++ +DG+E P E G + VK P M ++ P+ ++ G+ T D
Sbjct: 386 STEIKLVDDDGNEVPPGEPGELWVK---GPQVMLGYWQRPEATDEVIKD---GWLATGDI 439
Query: 562 GYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEI 618
DE G++ + R D+I V+G + + +EDVV+ HP V + A +GVP GE
Sbjct: 440 AVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEA 496
|
Length = 560 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 8e-12
Identities = 29/77 (37%), Positives = 45/77 (58%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
+Y EL+E + A LA++GV G+RV +P PE V+ L T++LGA++ +F F
Sbjct: 2 SYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFGP 61
Query: 171 RELCARLEHAKPKVIIA 187
+ RLE + KV+I
Sbjct: 62 EPIRDRLELGEAKVLIT 78
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 9e-12
Identities = 47/223 (21%), Positives = 83/223 (37%), Gaps = 69/223 (30%)
Query: 255 EANDPLYILYTSGTTGKPQG--------CSELRSEDQPKGILRPVG-----GHIATLAWT 301
+DP Y++YTSG+TGKP+G C+ LR+E G + + A++A+
Sbjct: 97 SPDDPAYVIYTSGSTGKPKGVVITHRNICNFLRAE----GAILGIRPGDRVLQFASIAFD 152
Query: 302 MSVIYNMGQDDVWWTASDMGWVVGHSYICYGP---LAAGITSVMYEGKPDRTPDPSQYYR 358
+S++ +++ T + G + + P + +
Sbjct: 153 VSIL------EIFTT-----LLAGGT-LVIPPEELRLEDLAEFLNR-------------- 186
Query: 359 VIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKN-WAEKS 417
+V P+ L ++ ED SLR L + GE C + W++
Sbjct: 187 ----LRVTVAHLTPSLLALLDPED----------VPSLRTLILGGEACPQALVDRWSKP- 231
Query: 418 FNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGY 460
+LN + TE + TA + P + G P P Y
Sbjct: 232 --RRLLNTYGPTEATVTATAS----RLTPGKP-VNIGRPLPNY 267
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 9e-12
Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 503 VEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAG 562
VE+RI G P+ G I ++ P +K P++ + ++ ++ + D G
Sbjct: 328 VEIRIADGAGRWLPPNMKGEICMR---GPKVTKGYWKDPEKTAEAFYG---DWFRSGDVG 381
Query: 563 YYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIP 619
Y DE G++Y+T R D+I G +++S +E V+ P+V + AVIGV + GE
Sbjct: 382 YLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERI 438
|
Length = 497 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 1e-11
Identities = 70/301 (23%), Positives = 108/301 (35%), Gaps = 50/301 (16%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
+TYAEL EQ + LA L A+GV AGD V + ++++ A ++GA ++ GF+
Sbjct: 75 LTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFS 134
Query: 170 ARELCARLEHAKPKVII-----AASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRR 224
+L K ++ P + R +
Sbjct: 135 GPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNP----------------- 177
Query: 225 CVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQP 284
++ + L D L S +P ++ TSGTTG P
Sbjct: 178 -DDDEPSGSTDETL--DDLIAGSSTAPLPKPPKPGGIVILTSGTTG------------TP 222
Query: 285 KGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDM--GWVVGHSYICYGPLAAGITSVM 342
KG RP +A LA +S + + + M H + +A G T V+
Sbjct: 223 KGAPRPEPSPLAPLAGLLSRV-PFRAGETTLLPAPMFHATGWAHLTLA---MALGSTVVL 278
Query: 343 YEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVA 402
R DP I HK L P L I + + A+Y T SL+ +FV+
Sbjct: 279 R-----RRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPE--VLAKYDTSSLKIIFVS 331
Query: 403 G 403
G
Sbjct: 332 G 332
|
Length = 549 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 1e-11
Identities = 43/194 (22%), Positives = 75/194 (38%), Gaps = 24/194 (12%)
Query: 240 DDALAQRLSHRC-VPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATL 298
D L H V ++ ++ Y++YTSG+TG QPKG+ G +A
Sbjct: 638 ADLLCGYSGHNPEVALDPDNLAYVIYTSGSTG------------QPKGVAIS-HGALANY 684
Query: 299 AWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYR 358
++ + DD S + +G + + +G LA+G T + PD D +
Sbjct: 685 VCVIAERLQLAADDSMLMVSTFAFDLGVTEL-FGALASGATLHLLP--PDCARDAEAFAA 741
Query: 359 VIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKN-WAEKS 417
++ + V L P+ L+ + ++ A R L GE +
Sbjct: 742 LMADQGVTVLKIVPSHLQALL----QASRVALPR--PQRALVCGGEALQVDLLARVRALG 795
Query: 418 FNVTMLNHWWQTET 431
++NH+ TET
Sbjct: 796 PGARLINHYGPTET 809
|
Length = 3956 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 3e-11
Identities = 51/210 (24%), Positives = 78/210 (37%), Gaps = 50/210 (23%)
Query: 81 NAIDRHVERGMAK---KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRV 137
++ E A+ + AL+ + + ++YAEL + + A AA GV GD V
Sbjct: 37 RSLGDVFEEAAARHPDRPALLFED------QSISYAELNARANRYAHWAAARGVGKGDVV 90
Query: 138 LIYMPLIPEAIVSMLATVRLGA----IHSVVFGGFAARELCARLEHA----KPKVIIAAS 189
+ M PE + + L +LGA +++ G A L H+ K +I
Sbjct: 91 ALLMENRPEYLAAWLGLAKLGAVVALLNTQQRG--------AVLAHSLNLVDAKHLIVGE 142
Query: 190 CGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSH 249
E L EA E + D + R T ++D LA +
Sbjct: 143 ---E----------LVEAFE--EARAD--LARPPRLWVAGGDTLDDPEGYED-LAAAAAG 184
Query: 250 RCVP-------VEANDPLYILYTSGTTGKP 272
V A D + +YTSGTTG P
Sbjct: 185 APTTNPASRSGVTAKDTAFYIYTSGTTGLP 214
|
Length = 600 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 4e-11
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 496 NATHFT--------SVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKI 547
+AT F+ S EV I +DG++ E G I ++ P M+ + P K+
Sbjct: 374 DATEFSGTIGLPLPSTEVSIRDDDGNDLPLGEPGEICIR---GPQVMAGYWNRPDETAKV 430
Query: 548 YFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAV 607
G++ T D G DE GY + R D+I V+G + + +E+VV SHP V + A
Sbjct: 431 MTAD--GFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAA 488
Query: 608 IGVPEPTKGEIPFCLYIKK 626
+GVP+ GE +KK
Sbjct: 489 VGVPDEHSGEAVKLFVVKK 507
|
Length = 557 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 4e-11
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 529 LPPGTMSTLYKAPQRFMKIYFTKFP---------GYYDTMDAGYYDENGYIYVTARDDDV 579
LPPG L+ MK Y G+ T D Y+DE+GY+Y+ R ++
Sbjct: 396 LPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEI 455
Query: 580 INVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKK 626
I G +++ + LE V++SHP++ D AV VP+ GEIP +++
Sbjct: 456 IKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRR 502
|
Length = 560 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 1e-10
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 106 SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIH---S 162
+ + T+ +L++ + LA +L +GV GDRV +Y+P PE ++ LA +LGA+ S
Sbjct: 3 TREEYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLS 62
Query: 163 VVFGGFAARELCARLEHAKPKVII 186
V+FG A + RL + +V++
Sbjct: 63 VLFGPDA---VEHRLRDSGARVLV 83
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 1e-10
Identities = 59/217 (27%), Positives = 89/217 (41%), Gaps = 61/217 (28%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVF-- 165
+KVT+ EL E V +AG LAA+GV GDRV + M E I+ + A +LGA+ V
Sbjct: 26 KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAV--AVLLN 83
Query: 166 GGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRC 225
+ EL +L+ A+ K +I D+
Sbjct: 84 TRLSREELLWQLDDAEVKCLITD--------------------------DDF-------- 109
Query: 226 VEEAELTPGYDILWDDALAQRLSHRCVPVEA---NDPLYILYTSGTTGKPQGCSELRSED 282
EA+L PG + + + + E ++ I+YTSGTTGK
Sbjct: 110 --EAKLIPGISVKFAELMNGPKEEA-EIQEEFDLDEVATIMYTSGTTGK----------- 155
Query: 283 QPKGILRPVGGHIATLAWTMSVIYNMG--QDDVWWTA 317
PKG+++ G H + + N+G +DD W A
Sbjct: 156 -PKGVIQTYGNHWWS---AVGSALNLGLTEDDCWLAA 188
|
Length = 483 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 1e-10
Identities = 78/354 (22%), Positives = 123/354 (34%), Gaps = 62/354 (17%)
Query: 66 PFTKWFVGGEINACYNA----IDRHVERGMAKKVALIHDSP-VTKSIRKVTYAELQEQVS 120
FT W E Y DR + + A D V R+++YAEL ++
Sbjct: 7 GFTPW--PEEFARRYREKGYWQDRTLTDILTDHAARYPDRIAVIDGERRLSYAELDQRAD 64
Query: 121 LLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHA 180
LA L +G+ GD VL+ +P + E ++ A +RLG + A EL A
Sbjct: 65 RLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQI 124
Query: 181 KPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWD 240
+ ++I A + Y+ E + + I+ + + +
Sbjct: 125 EAALLIVA----RQHSGFDYRPFARELVAKHPTLR-HVIVAGE---------AEHPSVLE 170
Query: 241 DALAQRLSHR--CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATL 298
AL P +A + + + GTTG PK I R + ++
Sbjct: 171 AALCHPAGLFTPAPPADAGEVAFFQLSGGTTG------------TPKLIPRTHNDYYYSV 218
Query: 299 AWTMSV-IYNMGQDDVWWTASDMGWVVGHSYICYGPLAA-GITSVMYEG-----KPDRTP 351
S I Q V+ A H++ PL++ G V G PD P
Sbjct: 219 --RASAEICGFDQQTVYLCALPA----AHNF----PLSSPGALGVFLAGGTVVLAPD--P 266
Query: 352 DPSQYYRVIHNHKVN--GLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAG 403
P + +I H V L +L + E + + L SLR L V G
Sbjct: 267 SPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLS------SLRLLQVGG 314
|
Length = 542 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 1e-10
Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G++DT D D GY+ +T R DVI G +S+ LE++ + HP V + AVIGV P
Sbjct: 410 GFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHP 469
Query: 614 TKGEIPFCLYIKK 626
E P + K
Sbjct: 470 KWDERPLLIVQLK 482
|
Length = 542 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 2e-10
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 44/179 (24%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
+ TY +L + LA L A+GV GDRV + + PEA+ LAT+R GA+ +
Sbjct: 27 LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTA 86
Query: 168 FAARELCARLEHAKPKVI------------IAASCGVEPNKVVRYKTILNEALEISSCKP 215
+ EL + A+P ++ IAA+ G + L+ S
Sbjct: 87 YTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAG------APHVETLDADGTGS---- 136
Query: 216 DYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
L + A A VP A+D ILYTSGTTG+ +G
Sbjct: 137 ----------------------LLEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKG 173
|
Length = 504 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 3e-10
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
+TY EL + LA +LA +GV GD V +P E +V LA R+GA+ + + +
Sbjct: 2 LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61
Query: 170 ARELCARLEHAKPKVIIAAS 189
REL L A+ +V+
Sbjct: 62 ERELGFILRQARARVLFVPD 81
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 4e-10
Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 28/155 (18%)
Query: 483 LPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPH---ELGRIVVKLPLPPGTMSTLYK 539
LP R + Q + EV ++ + + P +G IV++ G
Sbjct: 333 LPAEERARLKARQGVRYVGLEEVDVVDPETMKDVPRDGKTIGEIVMR-----GNT----- 382
Query: 540 APQRFMKIYFTKFP---------GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTS 590
MK Y+ K P G++ + D +GYI + R D+I G +S+
Sbjct: 383 ----VMKGYY-KNPEATEEAFAGGWFHSGDLAVVHPDGYIEIKDRSKDIIISGGENISSI 437
Query: 591 ALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIK 625
+E V+ HP V + AV+ P+ GE P C ++
Sbjct: 438 EVEGVLYKHPAVLEAAVVARPDEKWGETP-CAFVV 471
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 4e-10
Identities = 121/620 (19%), Positives = 207/620 (33%), Gaps = 151/620 (24%)
Query: 141 MPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRY 200
MP+ +A++ LA V G + V F+A+E+ RL+ + K + + V+R
Sbjct: 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQ------DVVLRG 54
Query: 201 KTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCV------PV 254
L ++ P I+ A D+ W D L + V PV
Sbjct: 55 GRALPLYSKVVEAAPAKAIVLPAAGEPVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPV 114
Query: 255 --EANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDD 312
IL++SGTTG+P+ P L P+ A+ W ++ D
Sbjct: 115 YAPVESVTNILFSSGTTGEPKAI--------PWTHLSPL--RCASDGWAH---MDIQPGD 161
Query: 313 VWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAP 372
V +++GW++G ++ Y G T +Y G P ++ + + V L P
Sbjct: 162 VVCWPTNLGWMMG-PWLLYSAFLNGATLALYGGAP-LGRGFGKF---VQDAGVTVLGLVP 216
Query: 373 TALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNW--AEKSFNVTMLNHWWQTE 430
+ ++ R + G +S LR GE + W + + + ++ + TE
Sbjct: 217 SIVKAWRHTGAFAMEGLDWS--KLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTE 274
Query: 431 TGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKN 490
+ L P +ST
Sbjct: 275 LASGYISSTL--LQPQAPGAFST------------------------------------- 295
Query: 491 VPKGQNATHFTSVEVRIIRNDGSECEPHE---LGRIVVKLPLPPGTMSTLYKAPQRFMKI 547
A+ T ++ ND P + +G + + P+ G L A K+
Sbjct: 296 ------ASLGTRF---VLLNDNGVPYPDDQPCVGEVALAPPM-LGASDRLLNADHD--KV 343
Query: 548 YFTKFPGYYDT-------------MDAGYYDENGYIYVTARDDDVINVAGHRLSTSALED 594
Y+ P Y GY+ G R DD +N+ G + S+ +E
Sbjct: 344 YYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQG------RADDTMNLGGIKTSSVEIER 397
Query: 595 VVLSHPD-VGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTN 653
+ +TA +GV P G P L I + +K GF
Sbjct: 398 ACDRAVAGIAETAAVGVAPPDGG--PELLVIFLVLGEEKKGFD----------------- 438
Query: 654 PIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLS--TSVTGLPRTRSGK 711
E + K+ +E ++ + P+ FK+S V LPR S K
Sbjct: 439 -----------------QARPEALQKKFQEAIQTNLNPL--FKVSRVKIVPELPRNASNK 479
Query: 712 TARKSIVDMARNK-PLRVRL 730
R+ + D + + R +L
Sbjct: 480 LLRRVLRDQLKKELSGRSKL 499
|
Length = 499 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 6e-10
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
T+AEL+E+ A L +GV GDRV + +P +PE +L ++LGA+
Sbjct: 1 WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60
Query: 170 ARELCARLEHAKPKVIIA 187
+++ RLE A + I+
Sbjct: 61 PKDIRYRLERAGARAIVT 78
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 9e-10
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G Y + D Y D +GY Y R D + V G L T+ +E ++L +PD + AV VP+P
Sbjct: 381 GVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDP 440
Query: 614 TKGE 617
G+
Sbjct: 441 VVGD 444
|
Length = 529 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 1e-09
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 22/126 (17%)
Query: 502 SVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDA 561
+V R++ + ++ E+G IV Y+AP M Y+ +
Sbjct: 353 TVAARVVDENMNDVPVGEVGEIV-------------YRAPT-LMSGYWNNPEATAEAFAG 398
Query: 562 GYY--------DENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G++ DE GY++V R D+I G + + +E+V+ SHPD+ + AVIG +
Sbjct: 399 GWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADE 458
Query: 614 TKGEIP 619
GE+P
Sbjct: 459 KWGEVP 464
|
Length = 542 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-09
Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 19/167 (11%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
R TYA+++ +A L +G+ GD V++ +P PE +++ L R GA+ +
Sbjct: 49 RVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPF 108
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE 227
+ E+ + + + K+II SC V+ K+ ++ + + + C+
Sbjct: 109 YTPAEIAKQAKASGAKLIITQSCYVD--KLKGLAE--DDGVTVVTIDDP-----PEGCLH 159
Query: 228 EAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
+ELT ++ L + V + +D + + Y+SGTTG P+G
Sbjct: 160 FSELTQAD----ENELPE------VEISPDDVVALPYSSGTTGLPKG 196
|
Length = 537 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 1e-09
Identities = 73/342 (21%), Positives = 131/342 (38%), Gaps = 57/342 (16%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
YAEL + + LA +L GV V + M E +V++LA ++ G + + + A
Sbjct: 538 DYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPA 597
Query: 171 RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAE 230
L LE + +++++ S + K L + Q ++
Sbjct: 598 ERLAYMLEDSGVQLLLSQS-------HLGRKLPLAAGV-------------QVLDLDRPA 637
Query: 231 L-TPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILR 289
GY ++ L+ + Y++YTSG+TGK PKG
Sbjct: 638 AWLEGY---SEENPGTELN-------PENLAYVIYTSGSTGK------------PKGAGN 675
Query: 290 PVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDR 349
L W M Y +G D + + V + + PL +G V+ P
Sbjct: 676 RHRALSNRLCW-MQQAYGLGVGDTVLQKTPFSFDVSV-WEFFWPLMSGARLVV--AAPGD 731
Query: 350 TPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHC--D 407
DP++ +I+ V+ L P+ L+ +++ + S SLR + +GE D
Sbjct: 732 HRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDVA------SCTSLRRIVCSGEALPAD 785
Query: 408 HETKNWAEKSFNVTMLNHWWQTETGHSIT-AHCLGYQHDTVP 448
+ + +A+ + N + TE +T C+ D+VP
Sbjct: 786 AQEQVFAKLP-QAGLYNLYGPTEAAIDVTHWTCVEEGGDSVP 826
|
Length = 5163 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 2e-09
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 94 KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153
VA++ + +TY EL E+ + LA L A GV GD V I + PE +V++LA
Sbjct: 3 AVAVVFGD------QSLTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAILA 56
Query: 154 TVRLGA 159
++ GA
Sbjct: 57 VLKAGA 62
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-09
Identities = 31/80 (38%), Positives = 42/80 (52%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
+TYAEL E V LAG L GV GDRV +YM P+ +++ A +R GA+ V
Sbjct: 2 ITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNR 61
Query: 170 ARELCARLEHAKPKVIIAAS 189
EL L + +V+I S
Sbjct: 62 EAELEHILNDSGARVLIVGS 81
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 76/351 (21%), Positives = 128/351 (36%), Gaps = 58/351 (16%)
Query: 66 PFTKWFVGGEINACYNA----IDRHVERGMAKKVALIHDSP-VTKSIRKVTYAELQEQVS 120
FT W E+ Y D+ + + + A D+ + R+ +Y EL ++
Sbjct: 2 EFTPWPE--ELAERYREKGYWQDKPLTDILRDQAARYPDAIAIICGNRQWSYRELDQRAD 59
Query: 121 LLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAAR--ELCARLE 178
LA L +G+ GD ++ +P I E + A ++LG V F+ R EL A
Sbjct: 60 NLAAGLTKLGIKQGDTAVVQLPNIAEFYIVFFALLKLGVAP--VLALFSHRKSELTAYAS 117
Query: 179 HAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL 238
+P + I + + Y + S II + E L
Sbjct: 118 QIEPALYIIDR----AHSLFDYDDFARQLQ--SKLPTLRNIIVAGQTGEAELF------L 165
Query: 239 WDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATL 298
W ++ A+ + P ++++ + + G+TG PK I R + ++
Sbjct: 166 WLESPAEPVK--FPPTKSDEVAFFQLSGGSTG------------TPKLIPRTHNDYYYSV 211
Query: 299 AWTMSV-IYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEG-----KPDRTPD 352
SV I + Q + A H+Y P A G V Y G PD P
Sbjct: 212 --RRSVEICWLTQQTRYLCALPA----AHNYPLSSPGALG---VFYAGGCVVLAPD--PS 260
Query: 353 PSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAG 403
P+ + +I HKV P A+ + + ++ SL+ L V G
Sbjct: 261 PTDCFPLIERHKVTVTALVPPAVALWM----QAASKSRADLSSLKLLQVGG 307
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 2e-09
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G T D GY D G +++ R+DD+I G + A+E+ + +HP V D AVIGVP+
Sbjct: 396 GMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDE 455
Query: 614 TKGE 617
G
Sbjct: 456 RFGH 459
|
Length = 516 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-09
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 6/127 (4%)
Query: 504 EVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGY 563
EV + DG+ E+GR++ + P T YK+PQ + G+Y + D
Sbjct: 364 EVWVADADGNPLPQGEVGRLMTRGPY---TFRGYYKSPQHNASAFDAN--GFYCSGDLVS 418
Query: 564 YDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLY 623
D +GYI V R+ D IN G +++ +E+++L HP V A++ + + GE C +
Sbjct: 419 IDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGE-KSCAF 477
Query: 624 IKKRIPL 630
+ + PL
Sbjct: 478 LVVKEPL 484
|
Length = 536 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 3e-09
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G+Y + D DE GYI +T R D+I G +S+ +ED++L HP + D V+ +P+
Sbjct: 410 GWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDE 469
Query: 614 TKGEIPFCLYI 624
GE C Y+
Sbjct: 470 RLGE-RSCAYV 479
|
Length = 547 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 3e-09
Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 12/146 (8%)
Query: 483 LPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHE---LGRIVVKLPLPPGTMSTLYK 539
LPE+ + + Q + +V + + E P + +G IV+K S++ K
Sbjct: 352 LPENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIK-------GSSIMK 404
Query: 540 APQRFMKIYFTKFP-GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLS 598
+ K F G+ +T D G +G++ + R D+I G +S+ +E+V+
Sbjct: 405 GYLKNPKATSEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYK 464
Query: 599 HPDVGDTAVIGVPEPTKGEIPFCLYI 624
+P V +TAV+ +P PT GE P C ++
Sbjct: 465 YPKVLETAVVAMPHPTWGETP-CAFV 489
|
Length = 579 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 3e-09
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 5/116 (4%)
Query: 502 SVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDA 561
S ++I +DG+E E+G + VK P M ++ P+ +I + G+ T D
Sbjct: 386 STLCKVIDDDGNELPLGEVGELCVK---GPQVMKGYWQRPEATDEILDSD--GWLKTGDI 440
Query: 562 GYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
E+GY+ + R D+I V+G + + LEDV+ + P V A IGVP+ GE
Sbjct: 441 ALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGE 496
|
Length = 562 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 3e-09
Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 34/167 (20%)
Query: 109 KVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF 168
++TY +L+EQ LA + + +++Y + P +V+ L +++ G + V
Sbjct: 25 ELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSI 84
Query: 169 AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEE 228
+ + +E A P+++I + V + I ALE
Sbjct: 85 PSERIEMIIEAAGPELVIHTA--ELSIDAVGTQIITLSALE------------------- 123
Query: 229 AELTPGYDILWDDALAQRLSH-RCVPVEANDPLYILYTSGTTGKPQG 274
A V+ +D YI+YTSG+TG P+G
Sbjct: 124 ------------QAETSGGPVSFDHAVKGDDNYYIIYTSGSTGNPKG 158
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 4e-09
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 92 AKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSM 151
+AL D R ++YAEL E+ + LA L A+GV GDRV + + + + ++
Sbjct: 1 PDAIALRDDD------RTLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAAL 54
Query: 152 LATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIA 187
LA ++ GA + + + A L LE A+P +++
Sbjct: 55 LAILKAGAAYVPLDPSYPAERLQYMLEDAEPALLLT 90
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 5e-09
Identities = 83/368 (22%), Positives = 138/368 (37%), Gaps = 67/368 (18%)
Query: 257 NDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMS--VIYNMGQDDVW 314
+D + I +TSGTTG+P+G + H A + +++ I G+DDV+
Sbjct: 172 DDAVLICFTSGTTGRPKGVTI---------------SHSALIVQSLAKIAIVGYGEDDVY 216
Query: 315 WTASDMGWVVGHSYICY-GPLAAGITSVMYEGKPDRTP--DPSQYYRVIHNHKVNGLFTA 371
+ + C+ G L++ + +M P D + I H V + T
Sbjct: 217 LHTAPL---------CHIGGLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITV 267
Query: 372 PTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTE 430
P + + + S S+R + G A+K F N + + + TE
Sbjct: 268 PAMMADLISLTRKSMTWK--VFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTE 325
Query: 431 TGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKN 490
S+T L HD P S + + V + CV
Sbjct: 326 ACSSLTFMTL---HD--PTLESPKQTLQTVNQTKSSSVHQ----PQGVCV---------- 366
Query: 491 VPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFT 550
G+ A H VE++I ++ S +GRI+ + P M L Q
Sbjct: 367 ---GKPAPH---VELKIGLDESSR-----VGRILTR---GPHVM--LGYWGQNSETASVL 410
Query: 551 KFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGV 610
G+ DT D G+ D+ G +++ R +D I G + +E V+ HP V V+GV
Sbjct: 411 SNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGV 470
Query: 611 PEPTKGEI 618
P+ E+
Sbjct: 471 PDSRLTEM 478
|
Length = 563 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 7e-09
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 506 RIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYD 565
++I +DG+E E G + +K P M ++ P+ + + G++ T D D
Sbjct: 398 KVIDDDGNELPLGERGELCIK---GPQVMKGYWQQPEATAEALDAE--GWFKTGDIAVID 452
Query: 566 ENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
+G++ + R D+I V+G + + +EDVV++HP V + A IGVP+ GE
Sbjct: 453 PDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGE 504
|
Length = 562 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 7e-09
Identities = 40/171 (23%), Positives = 63/171 (36%), Gaps = 31/171 (18%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAI----HSV 163
+TYAEL + +A L A+G + GDRVL+ P + + + + GAI
Sbjct: 22 ETLTYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPP 80
Query: 164 VFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQR 223
G L A L A + ++ S +R AL +
Sbjct: 81 RRLGRHLARLAAILADAGARAVLTTS---AVLAALRAALAAPAALLL-----------LL 126
Query: 224 RCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
++ D W R P + +D ++ YTSG+TG P+G
Sbjct: 127 IAADDLAALAAAD--W----------RPPPPDPDDIAFLQYTSGSTGAPKG 165
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 9e-09
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 94 KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153
++AL+ R +TY EL + LA +L A+G+ GDRV + P E +V LA
Sbjct: 2 RIALVDGG------RSLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLA 55
Query: 154 TVRLGAIHSVVFGGFAARELCARLEHAKPKVII 186
R G + + + A EL L ++P +++
Sbjct: 56 IWRAGGVAVPLNPSYPAAELAYILSDSQPSLLV 88
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 9e-09
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFG--G 167
+T+ EL ++VS LA LAA+GV GDRV + E ++ LA +RLGA+ V+
Sbjct: 2 LTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAV--VLPLNPR 59
Query: 168 FAARELCARLEHAKPKV 184
EL +L +P +
Sbjct: 60 LPQEELQQQLADLQPDL 76
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
+YA+L ++ + +A L GV GDRVL+ +P +PE +MLA ++LGA+
Sbjct: 1 YSYAQLSKRSNRVANFLRKHGVRRGDRVLLMLPNVPELWEAMLAAIKLGAVVIPATTLLT 60
Query: 170 ARELCARLEHAKPKVIIAAS 189
+L R KPK I+A
Sbjct: 61 PADLRDRFSRGKPKAIVADE 80
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 1e-08
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G+ T D GY D++G I++ R ++I G +++ + LE ++L+HP V D AV+ +P+
Sbjct: 417 GWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDE 476
Query: 614 TKGEIP-FCLYIKKR 627
GEIP C+ I +
Sbjct: 477 EAGEIPAACVVINPK 491
|
Length = 546 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-08
Identities = 69/325 (21%), Positives = 116/325 (35%), Gaps = 81/325 (24%)
Query: 83 IDRHVERGMAKK----VALIH----DSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAG 134
I RH+ R A++ +A+ + + ++++AEL + +A L A G+ G
Sbjct: 8 IARHLPR-AAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRG 66
Query: 135 DRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEP 194
R ++ + E A + GA+ +V G + L L A+P I G+
Sbjct: 67 MRAVLMVTPSLEFFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFI----GIPK 122
Query: 195 NKVVRYKTILNEALEISSCKPDYCIIF--------QRRCVEEAELTPGYDILWDDALAQR 246
+ R +F + V L G + L +
Sbjct: 123 AHLAR-------------------RLFGWGKPSVRRLVTVGGRLLWGGTTL---ATLLRD 160
Query: 247 LSH---RCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMS 303
+ + +D IL+TSG+TG PKG++ H A
Sbjct: 161 GAAAPFPMADLAPDDMAAILFTSGSTGT------------PKGVVYT---HGMFEA---- 201
Query: 304 VIYNMGQDDVWWTASDMGWVVGHSYICYGPL------AAGITSVMYEGKPDR--TPDPSQ 355
I + + D G G + PL A G+TSV+ + P R T DP++
Sbjct: 202 QIEALRE--------DYGIEPGEIDLPTFPLFALFGPALGMTSVIPDMDPTRPATVDPAK 253
Query: 356 YYRVIHNHKVNGLFTAPTALRVIRR 380
+ I + V LF +P L + R
Sbjct: 254 LFAAIERYGVTNLFGSPALLERLGR 278
|
Length = 552 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 2e-08
Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 502 SVEVRIIRNDGSECEPHELGRIVVKLP-LPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMD 560
+V+ R++ + G++C G ++++ P L PG ++ PQ + FT G++ T D
Sbjct: 314 TVQTRVVDDQGNDCPAGVPGELLLRGPNLSPG----YWRRPQATARA-FTG-DGWFRTGD 367
Query: 561 AGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPF 620
D +G+ +V R D+ G + + +E V+ HP + + AV+G+ + GE+ +
Sbjct: 368 IARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGY 427
Query: 621 C 621
Sbjct: 428 L 428
|
Length = 488 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-08
Identities = 58/284 (20%), Positives = 103/284 (36%), Gaps = 56/284 (19%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
TY+ L S LA L A G+ GDRV +P E + LA +++GA+ + +
Sbjct: 51 TYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWRE 110
Query: 171 RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAE 230
EL L + K+ A + +K I + + ++ V +
Sbjct: 111 AELVWVLNKCQAKMFFAPT---------LFKQT-RPVDLILPLQNQ--LPQLQQIVGVDK 158
Query: 231 LTPGYDILWDDALAQRLS-----HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPK 285
L P +L+Q ++ + ++ +L+TSGT G P+G + + +
Sbjct: 159 LAPATS---SLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGV--MLTHNN-- 211
Query: 286 GILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEG 345
IL + A L N+ DV+ + +G G + P G SV+ +
Sbjct: 212 -ILASERAYCARL--------NLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLD- 261
Query: 346 KPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGA 389
+FT L ++ ++ LGA
Sbjct: 262 ----------------------IFTPDACLALLEQQRCTCMLGA 283
|
Length = 547 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 3e-08
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 26/136 (19%)
Query: 503 VEVRIIRNDGSECEPHELGRIVVKLP------LPPGTMSTLYKAPQRFMKIYFTKFPGYY 556
E+RI P + G I+V+ P LP G ++ G++
Sbjct: 251 RELRI-------VNPQD-GEILVRGPSLFLGYLPQGGLTPPLDED------------GWF 290
Query: 557 DTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKG 616
T D GY D GY+YV R DD+I G + +E V+L HP V + AV+GVP+ G
Sbjct: 291 HTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWG 350
Query: 617 EIPFCLYIKKRIPLDK 632
+ P + P+
Sbjct: 351 QRPVAFVVPNDDPVSV 366
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 24/61 (39%), Positives = 32/61 (52%)
Query: 558 TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
T D GY E G ++ R DDVINV+G + +EDV+L P V + V +P GE
Sbjct: 295 TKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGE 354
Query: 618 I 618
Sbjct: 355 R 355
|
Length = 414 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 4e-08
Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 46/173 (26%)
Query: 109 KVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG------AIHS 162
K+TY +L+E LA + ++ + ++++ + PE + + L V+ G + S
Sbjct: 27 KLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPVDVSS 86
Query: 163 VVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTI-LNEALEISSCKPDYCIIF 221
A + +E AKP +IIA P +++ I L+E +I + Y
Sbjct: 87 ------PAERIEMIIEVAKPSLIIATE--ELPLEILGIPVITLDELKDIFATGNPY---- 134
Query: 222 QRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
H V+ +D YI++TSGTTGKP+G
Sbjct: 135 ------------------------DFDH---AVKGDDNYYIIFTSGTTGKPKG 160
|
Length = 503 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 56.3 bits (135), Expect = 4e-08
Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 9/142 (6%)
Query: 485 ESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGT-MSTLYKAPQR 543
E L G + ++ P + G+ + ++ L Y +
Sbjct: 326 EKLTLKAKTGLP--IPL--VRLRVADEEGRPVPKD-GKALGEVQLKGPWITGGYYGNEEA 380
Query: 544 FMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVG 603
G++ T D +DE GY+ + R D+I G +S+ LE+ ++ HP V
Sbjct: 381 TRSALTPD--GFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVK 438
Query: 604 DTAVIGVPEPTKGEIPFCLYIK 625
+ AV+ +P P E +
Sbjct: 439 EAAVVAIPHPKWQE-RPLAVVV 459
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 4e-08
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G Y + D Y D +G+IY R D + V G LS + +E ++L HP + AV VP+
Sbjct: 380 GMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDE 439
Query: 614 TKGE 617
G+
Sbjct: 440 RVGD 443
|
Length = 540 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 4e-08
Identities = 87/389 (22%), Positives = 143/389 (36%), Gaps = 106/389 (27%)
Query: 253 PVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGIL---RPVGGHIATLAWTMSVIYNMG 309
+ +D I+++SG+ G +PKG++ + +I + S ++N+
Sbjct: 778 TFKPDDTATIIFSSGSEG------------EPKGVMLSHHNILSNIEQI----SDVFNLR 821
Query: 310 QDDVWWTASDMGWVVG-----HSY----ICYGPLAAGITSVMYEGKPDRTPDPSQYYRVI 360
DDV ++ HS+ + PL GI V + PD T D +++
Sbjct: 822 NDDV---------ILSSLPFFHSFGLTVTLWLPLLEGIKVVYH---PDPT-DALGIAKLV 868
Query: 361 HNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNV 420
H+ L PT LR+ R K L ++ SLR + E E + E+ F +
Sbjct: 869 AKHRATILLGTPTFLRLYLRNKKLHPL--MFA--SLRLVVAGAEKLKPEVADAFEEKFGI 924
Query: 421 TMLNHWWQTETGHSITAHC-------LGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWL 473
+L + TET + + Q + S G+P PG
Sbjct: 925 RILEGYGATETSPVASVNLPDVLAADFKRQTGSKEG--SVGMPLPGV------------- 969
Query: 474 DGRAHCVRIL-PESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPG 532
VRI+ PE+ E P E G I++ P
Sbjct: 970 -----AVRIVDPET-------------------------FEELPPGEDGLILIG---GPQ 996
Query: 533 TMSTLYKAPQRFMK-IYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSA 591
M P++ + I G+Y T D G+ DE+G++ +T R + G + A
Sbjct: 997 VMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGA 1056
Query: 592 LED---VVLSHPDVGDTAVIGVPEPTKGE 617
+E+ L +V AV VP+ KGE
Sbjct: 1057 VEEELAKALGGEEV-VFAVTAVPDEKKGE 1084
|
Length = 1146 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 5e-08
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 22/127 (17%)
Query: 500 FTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLY-KAPQRFMKIYFTK------- 551
F EVRI+ +P + +P G L + PQ F K Y+ +
Sbjct: 395 FPDTEVRIV-------DPEDPDET-----MPDGEEGELLVRGPQVF-KGYWNRPEETAKS 441
Query: 552 -FPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGV 610
G++ T D +E+G+I + R ++I G + + +E+V+ HP V D AV+G+
Sbjct: 442 FLDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGL 501
Query: 611 PEPTKGE 617
P E
Sbjct: 502 PREDGSE 508
|
Length = 573 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 5e-08
Identities = 72/302 (23%), Positives = 118/302 (39%), Gaps = 58/302 (19%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
++++YAE +++ AG L A G+ GD V + M + A LGA+ +
Sbjct: 26 QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYR 85
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE 227
AA E+ L A K+++ + K +++ A + S +R
Sbjct: 86 LAADEVAYILGDAGAKLLLVDEEFDAIVALETPKIVIDAAAQADS---------RRLAQG 136
Query: 228 EAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGI 287
E+ P V D + ++YTSGTT D+PKG+
Sbjct: 137 GLEIPPQA-----------------AVAPTDLVRLMYTSGTT------------DRPKGV 167
Query: 288 LRPVGGHIATLAW-TMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEG- 345
+ G L W ++ + +G TAS+ VVG Y GI +V++ G
Sbjct: 168 MHSYG----NLHWKSIDHVIALG-----LTASERLLVVGPLYHVGAFDLPGI-AVLWVGG 217
Query: 346 --KPDRTPDPSQYYRVIHNHKVNGLFTAPTAL-RVIRREDKDSTLGAQYSTDSLRYLFVA 402
+ R DP I H++ + AP L RV+ D+D ++ DSL +
Sbjct: 218 TLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRD-----RFDLDSLAWCIGG 272
Query: 403 GE 404
GE
Sbjct: 273 GE 274
|
Length = 497 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 6e-08
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 5/125 (4%)
Query: 502 SVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDA 561
S + I + G+ E+G + +K P M +K P+ K+ G+ T D
Sbjct: 390 STDACIKDDAGTVLAIGEIGELCIK---GPQVMKGYWKRPEETAKVMDAD--GWLHTGDI 444
Query: 562 GYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFC 621
DE G++Y+ R D+I V+G + + +EDV+ P V + A +GVP+ GEI
Sbjct: 445 ARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKV 504
Query: 622 LYIKK 626
+ +KK
Sbjct: 505 VIVKK 509
|
Length = 560 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 7e-08
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 21/186 (11%)
Query: 93 KKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSML 152
K ALI +S +R+ +Y EL E+++ A ++G+ GD+V +++ PE I
Sbjct: 22 HKTALIFES-SGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWF 80
Query: 153 ATVRLGAIHSVVFGGFAARELCARLEHAKPKVII---AASCGV-EPNKVVRYKTILNEAL 208
++GAI +V + ARL + I+ AS V Y+ I E
Sbjct: 81 GLAKIGAI--MV-------PINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQED- 130
Query: 209 EISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGT 268
++ C+ R + + + L A L + P+ +D IL+TSGT
Sbjct: 131 --ATPLRHICLT--RVALPADDGVSSFTQLKAQQPAT-LCYA-PPLSTDDTAEILFTSGT 184
Query: 269 TGKPQG 274
T +P+G
Sbjct: 185 TSRPKG 190
|
Length = 517 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 7e-08
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
+TYAEL+E+ LA L A+G AGD V +Y P+A ++LA ++ GA + +
Sbjct: 15 DTLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILACLKAGAAYVPLDPS 74
Query: 168 FAARELCARLEHAKPKVIIAA 188
A + LE A P ++A
Sbjct: 75 QPAERIAKILEAAGPAALVAD 95
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 8e-08
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
+ +T+AEL E+V LA L A+GV GDRV I PE +++ LA + GA+ V
Sbjct: 4 QTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAV-PVPIYP 62
Query: 168 FAARELCAR-LEHAKPKVIIA 187
++ E A L + +V+
Sbjct: 63 TSSPEEVAYILNDSGARVVFV 83
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 8e-08
Identities = 43/168 (25%), Positives = 61/168 (36%), Gaps = 22/168 (13%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
TYAE + A +LAA GV GDRV + E + L LGAI V A
Sbjct: 48 TYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAI--AVPINTAL 105
Query: 171 RELCARLEH----AKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCV 226
R +LEH + ++++ + + L A P ++
Sbjct: 106 RG--PQLEHILRNSGARLLVVEAALLA---------ALEAADPGDLPLPAVWLL---DAP 151
Query: 227 EEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
+ G+ L V+ D ILYTSGTTG +G
Sbjct: 152 ASVSVPAGWSTAPLPPLDAPAP--AAAVQPGDTAAILYTSGTTGPSKG 197
|
Length = 542 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 9e-08
Identities = 131/653 (20%), Positives = 211/653 (32%), Gaps = 164/653 (25%)
Query: 99 HDSPVTKSIRK------VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSML 152
P ++R+ + Y EL +V LA L A VS G RVL+ PE +S+L
Sbjct: 25 RQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVL 84
Query: 153 ATVRLGAIHSVVFGGFAARELCARLEHAKP-KVIIAASCGVEPNKVVRYKTILNEALEIS 211
A +LGAI + G + + P ++A + S
Sbjct: 85 ACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMAS----------------S 128
Query: 212 SCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGK 271
+ I A L +LA + DPL +++TSGTTG+
Sbjct: 129 AVPEALHSIPVIAVDIAAVTRESEHSLDAASLAGNADQ-----GSEDPLAMIFTSGTTGE 183
Query: 272 PQGC-SELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYIC 330
P+ R+ IL+ G L W + WVVG +
Sbjct: 184 PKAVLLANRTFFAVPDILQKEG-----LNW-------------------VTWVVGET--T 217
Query: 331 YGPLAAG--------ITSVMYEGK-PDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRE 381
Y PL A +T +M+ G + + ++ + V PT L + E
Sbjct: 218 YSPLPATHIGGLWWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSE 277
Query: 382 DKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLG 441
K A + SLR + G + E + V + +ETG TA CL
Sbjct: 278 LK----SANATVPSLRLVGYGGSRAIAADVRFIEAT-GVRTAQVYGLSETG--CTALCLP 330
Query: 442 YQHDTVP--PKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATH 499
++ + G P+PG D V L DG P +
Sbjct: 331 TDDGSIVKIEAGAVGRPYPGVD------VYLAATDGIG-----------PTAPGAGPSAS 373
Query: 500 FTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTM 559
F ++ ++ P M + P+R ++ G+ +T
Sbjct: 374 FGTLWIK-----------------------SPANMLGYWNNPERTAEVLID---GWVNTG 407
Query: 560 DAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIP 619
D E+G+ Y+ R ++I G ++ ++ + V + A +P+
Sbjct: 408 DLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEE----- 462
Query: 620 FCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGK 679
F L+G ++ + DE +
Sbjct: 463 ---------------FGALVG------------------------LAVVASAELDESAAR 483
Query: 680 ELKELV----REAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKPLRV 728
LK + R P+A VT +PRT+SGK R S+ A RV
Sbjct: 484 ALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAATADKARV 536
|
Length = 540 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 502 SVEVRIIRND-GSECEPHELGRIVVKLPLPPGTMSTLYKAPQR----FMKIYFTKFPGYY 556
V+ R+I + E P E+G IVV P + P+ F++I +F +
Sbjct: 365 GVDARVIDPETLEELPPGEVGEIVVH---GPQVFKGYWNRPEATAEAFIEIDGKRF---F 418
Query: 557 DTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKG 616
T D G DE GY ++T R +IN +G ++ + +E+++ HP + + VI P+P +G
Sbjct: 419 RTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRG 478
Query: 617 E 617
E
Sbjct: 479 E 479
|
Length = 546 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 8/124 (6%)
Query: 494 GQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFP 553
G+ H +EV+++ DG+ E+G + + M + P+ +
Sbjct: 376 GRTQPH---LEVKVVDPDGATVPRGEIGELCTRGYS---VMKGYWNNPEATAESIDED-- 427
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G+ T D DE GY+ + R D+I G + +E+ + +HP V D V GVP+
Sbjct: 428 GWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDE 487
Query: 614 TKGE 617
GE
Sbjct: 488 KYGE 491
|
Length = 558 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 83/381 (21%), Positives = 130/381 (34%), Gaps = 98/381 (25%)
Query: 256 ANDPLYILYTSGTTGKPQGCSELRSEDQPKGIL---RPVGGHIATLAWTMSVIYNMGQDD 312
A+DP IL+TSG+TG PKG++ R I L +
Sbjct: 84 ADDPAAILFTSGSTGP------------PKGVVYTHRTFAAQIDALRSLYGI-------- 123
Query: 313 VWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDR--TPDPSQYYRVIHNHKVNGLFT 370
D + +GP A G+T+V+ P DP++ + I + +F
Sbjct: 124 ---REGDRDLAAFPPFALFGP-ALGVTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFG 179
Query: 371 APTALRVIRR--EDKDSTL---------GAQYSTDSLR-YLFVAGEHCDHETKNWAEKSF 418
+P L+ + R E+ L GA D LR ++ + T A ++
Sbjct: 180 SPALLKNVARYCEENGIQLPSLRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYGATEAL 239
Query: 419 NVT-MLNHWWQTETGHSITAH---CLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLD 474
V + E+ A C+G+ P PG D
Sbjct: 240 PVASIEGREVLAESAEPPEAGAGVCVGH-------------PVPGID------------- 273
Query: 475 GRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTM 534
VRI+P + E P E+G I+V P
Sbjct: 274 -----VRIIPIDDGPIASWDDDI----------------ELPPGEVGEIIVS---GPHVT 309
Query: 535 STLYKAPQ--RFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSAL 592
Y P+ + KI ++ D GY+D+ G ++ R + AG L T +
Sbjct: 310 REYYNRPEATKLAKIS-DGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAGGTLFTVPV 368
Query: 593 EDVVLSHPDVGDTAVIGVPEP 613
E V HP V +A++GV +P
Sbjct: 369 EQVFNRHPGVRRSALVGVGKP 389
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 1e-07
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 11/100 (11%)
Query: 529 LPPGTMSTLY-----------KAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDD 577
LP G + T+Y P++ P + D G DE+GY+Y+ R
Sbjct: 343 LPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKS 402
Query: 578 DVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
+I G + E+ + HP V D AVIGVP+P GE
Sbjct: 403 FMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGE 442
|
Length = 501 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 528 PLPPGTMSTLYKAPQRFMKIYF-----TKF-----PGYYDTMDAGYYDENGYIYVTARDD 577
LPPG T++ R + Y T + D GY DE+GY+Y+T R
Sbjct: 347 ELPPGEPGTIWFEGGRPFE-YLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAA 405
Query: 578 DVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
+I G + E+++++HP V D AV GVP GE
Sbjct: 406 FMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGE 445
|
Length = 511 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 2e-07
Identities = 82/370 (22%), Positives = 127/370 (34%), Gaps = 76/370 (20%)
Query: 252 VPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQD 311
V + ++ Y++YTSG+TG+ PKG+ G + L T Y + D
Sbjct: 4689 VRLHPDNLAYVIYTSGSTGR------------PKGVAVSHGSLVNHLHATGER-YELTPD 4735
Query: 312 DVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTA 371
D + H + Y PL G + V+ + D DP + Y IH H+V L
Sbjct: 4736 DRVLQFMSFSFDGSHEGL-YHPLINGASVVI---RDDSLWDPERLYAEIHEHRVTVLVFP 4791
Query: 372 PTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTE 430
P L+ + + SLR GE + + A ++ V + N + TE
Sbjct: 4792 PVYLQQLAEHAE-----RDGEPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTE 4846
Query: 431 TGHSITA-HCLGYQH---DTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPES 486
T ++ +P G P G YV LDG+
Sbjct: 4847 TTVTVLLWKARDGDACGAAYMP----IGTPLGNRSG-YV-------LDGQL--------- 4885
Query: 487 LRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMK 546
+P G E+ + G E + R ++ P +RF+
Sbjct: 4886 --NPLPVGVAG------ELYL----GGEG----VARGYLERPA---------LTAERFVP 4920
Query: 547 IYFTKFPG--YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGD 604
F PG Y T D Y +G I R D + + G R+ +E + HP V +
Sbjct: 4921 DPFGA-PGGRLYRTGDLARYRADGVIDYLGRVDHQVKIRGFRIELGEIEARLREHPAVRE 4979
Query: 605 TAVIGVPEPT 614
VI
Sbjct: 4980 AVVIAQEGAV 4989
|
Length = 5163 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
+T+ EL E+ +A L A G+ GDRV++ +P + A ++GA+ ++ G
Sbjct: 1 DSLTFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPG 60
Query: 168 FAARELCARLEHAKPKVII 186
+ L LE A+P I
Sbjct: 61 MGRKHLGRCLEEAEPDAFI 79
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 94 KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153
K A + +TY EL + + A L A+GVS GDRVL+ +P PE + + LA
Sbjct: 1 KTAFYCGE------QSLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLA 54
Query: 154 TVRLGAIHSVVFGGFAARELCARLEHAKPKVIIA 187
++ GA+ + ++L L+ + +++
Sbjct: 55 CLKAGAVAVALNPLLTPQDLEHILDDSGAALLVT 88
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 4e-07
Identities = 95/527 (18%), Positives = 174/527 (33%), Gaps = 104/527 (19%)
Query: 85 RHVERGMAKKVALIHDSPVTK-SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPL 143
R V R ++V D+ ++++YAEL + + LA L GV V + +
Sbjct: 3057 RGVHRLFEEQVERTPDAVALAFGEQRLSYAELNRRANRLAHRLIERGVGPDVLVGVAVER 3116
Query: 144 IPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTI 203
E +V +LA ++ G + + + L LE + +++++ S P
Sbjct: 3117 SLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHLRLP--------- 3167
Query: 204 LNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYIL 263
+ V+ +L G + + A R + Y++
Sbjct: 3168 ------------------LAQGVQVLDLDRGDENYAEANPAIR-------TMPENLAYVI 3202
Query: 264 YTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWV 323
YTSG+TGKP+G ++ M Y +G D + +
Sbjct: 3203 YTSGSTGKPKGVGIRH-------------SALSNHLCWMQQAYGLGVGDRVLQFTTFSFD 3249
Query: 324 VGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDK 383
V + + PL +G V+ P+ DP+ +I++ V+ L P+ L+ E+
Sbjct: 3250 VFVEEL-FWPLMSGARVVL--AGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEED 3306
Query: 384 DSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQ 443
SL+ + GE + + + + + N + TE ++T +
Sbjct: 3307 AHRCT------SLKRIVCGGEALPADLQ--QQVFAGLPLYNLYGPTEATITVTHWQCVEE 3358
Query: 444 HDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSV 503
P G P ++ + + VP G +
Sbjct: 3359 GKDAVP---IGRPIANRACYILDGSL-------------------EPVPVGALGELYLGG 3396
Query: 504 EVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGY 563
E L G + +RF+ F Y T D
Sbjct: 3397 EG-----------------------LARGYHNRPGLTAERFVPDPFVPGERLYRTGDLAR 3433
Query: 564 YDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGV 610
Y +G I R D + + G R+ +E +L HP V + V+ V
Sbjct: 3434 YRADGVIEYIGRVDHQVKIRGFRIELGEIEARLLEHPWVREAVVLAV 3480
|
Length = 5163 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 4e-07
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Query: 507 IIRNDGSECE---PHELGRIVVKLPLPPGTMSTLYKAPQRFMKIY---FTKFPGYYDTMD 560
IR+ C P E+G ++ ++ KI F K Y++T D
Sbjct: 266 PIRDANGFCIKVPPGEVGLLLGEI-TDRNPFDGYTDDEATEKKILRDVFKKGDAYFNTGD 324
Query: 561 AGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
D GY Y R D G +ST+ +E+V+ HP V + V GV P
Sbjct: 325 LVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKHPGVEEANVYGVEVP 377
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 5e-07
Identities = 101/521 (19%), Positives = 157/521 (30%), Gaps = 132/521 (25%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
+ ++YAEL + + LA L A GV RV I E +V++LA ++ G + +
Sbjct: 2027 QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPN 2086
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE 227
+ A L LE + +++ + L E L + + V
Sbjct: 2087 YPAERLAYMLEDSGAALLLT-------------QRHLLERLPLPA------------GVA 2121
Query: 228 EAELTPGYDILWDDALAQRLSHRCVPVEANDPL-YILYTSGTTGKPQGCSELRSEDQPKG 286
L D A A + L Y++YTSG+TG PKG
Sbjct: 2122 RLPLDR------DAEWADYPDTAPAVQLAGENLAYVIYTSGSTG------------LPKG 2163
Query: 287 ILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGK 346
+ G +A Y + D + H + PL G ++ +
Sbjct: 2164 VAVSHGALVAHCQAAGER-YELSPADCELQFMSFSFDGAHEQ-WFHPLLNGARVLI---R 2218
Query: 347 PDRTPDPSQYYRVIHNHKVNGLFTAPTALR-VIRREDKDSTLGAQYSTDSLRYLFVAGEH 405
D DP Q Y + H V L P L+ + ++D ++R GE
Sbjct: 2219 DDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDG------RPPAVRVYCFGGEA 2272
Query: 406 CDHET-KNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKY 464
+ + E V + N + TE V P P Y
Sbjct: 2273 VPAASLRLAWEALRPVYLFNGYGPTEA--------------VVTPLLWKCRPQDPCGAAY 2318
Query: 465 VNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIV 524
V I L R IL L
Sbjct: 2319 VPIGRA--LGNRRAY--ILDADLN------------------------------------ 2338
Query: 525 VKLPLPPGTMSTLYKAPQRFMKIYFTKFPG-----------------YYDTMDAGYYDEN 567
L PG LY + + Y + PG Y T D Y +
Sbjct: 2339 ---LLAPGMAGELYLGGEGLARGYLNR-PGLTAERFVPDPFSASGERLYRTGDLARYRAD 2394
Query: 568 GYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVI 608
G + R D + + G R+ +E + +HP V + V+
Sbjct: 2395 GVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVV 2435
|
Length = 5163 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 6e-07
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G++ T D D +G++ +T R DVI G +S+ +E+V ++HP V + A I P
Sbjct: 409 GWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHP 468
Query: 614 TKGEIPFCLYIKK 626
E P + +K+
Sbjct: 469 KWDERPLLVVVKR 481
|
Length = 539 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 6e-07
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G++ T D +GYI + R D+I G +S+ +EDV+ HP V AV+ P+P
Sbjct: 416 GWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDP 475
Query: 614 TKGEIPFCLYIKKR 627
GE+P C +++ +
Sbjct: 476 KWGEVP-CAFVELK 488
|
Length = 545 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 8e-07
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGA 159
+TYAEL + + LA L ++GV GD V + + P V++LA ++ GA
Sbjct: 16 GSLTYAELDRRANKLAHHLISLGVRPGDIVALCLERSPWLYVAILAVLKAGA 67
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 25/126 (19%)
Query: 64 DQPFTKWFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLA 123
D P T + + RH + +A+I R+ +Y EL + LA
Sbjct: 24 DLPLT------------DILTRHAA---SDAIAVICGE------RQFSYRELNQASDNLA 62
Query: 124 GSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAAR--ELCARLEHAK 181
SL G+ GD L+ + + E ++ A ++LG V F+ + EL A +
Sbjct: 63 CSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVA--PVNALFSHQRSELNAYASQIE 120
Query: 182 PKVIIA 187
P ++IA
Sbjct: 121 PALLIA 126
|
Length = 536 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 504 EVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLY-----KAPQRFMKIYFTKFPGYYDT 558
E R++ E E G ++++ P +T Y K + + ++F T
Sbjct: 353 EARVVDEHDQELPDGEPGELLLRAD-EPFAFATGYFGMPEKTVEAWRNLWF-------HT 404
Query: 559 MDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVP 611
D D +G+ R D I G +S+ +E V+LSHP V AV VP
Sbjct: 405 GDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVP 457
|
Length = 542 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 553 PGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPE 612
PG++ T D G D +G + V R DD I+ G + +E + +HP V D AV G+P+
Sbjct: 233 PGWFRTDDLGALD-DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPD 291
Query: 613 PTKGE 617
G+
Sbjct: 292 DRLGQ 296
|
Length = 358 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 3e-06
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 528 PLPPGTMSTLYKAPQRFMKIYFTK--------FPGYYDTMDAGYYDENGYIYVTARDDDV 579
LPPG + L + Y+ + + T D GY D +GY ++ R D+
Sbjct: 387 VLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYFFLVDRKKDM 446
Query: 580 INVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617
I G + +E + HP V + VIG+P+ +GE
Sbjct: 447 IISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGE 484
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDD-DVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPE 612
G++ T D D +G + R+ D+I G+R+ +E +L HP V + AV+GVP+
Sbjct: 350 GWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPD 409
Query: 613 PTKGE 617
G+
Sbjct: 410 DDLGQ 414
|
Length = 471 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 4e-06
Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 46/167 (27%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
+Y E++E+ + L A+G+ GD++ I+ PE I++ A
Sbjct: 7 SYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQA----------------- 49
Query: 171 RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAE 230
C + V + + G E + Y ILNE EIS I+F + +
Sbjct: 50 ---CFS--QSLVIVPLYDTLGEE---AIEY--ILNET-EIS-------IVF----CDAVK 87
Query: 231 LTPGYDILWDD--ALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGC 275
+ +++ L ++ P + D I+YTSGTTG P+G
Sbjct: 88 V-----YSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGV 129
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 5e-06
Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 47/214 (21%)
Query: 519 ELGRIVVKLPLPPGTMSTLY---KAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTAR 575
E+G +V P+P +M + ++ YF +PG + D G I + R
Sbjct: 463 EVGELVCTNPMP--SMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGR 520
Query: 576 DDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGF 635
D +N G R+ ++ + + V +V ++ IG +P G R+ L
Sbjct: 521 SDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGY---------RVVL----- 566
Query: 636 SGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAF 695
F L +L D+ + +K +R + P
Sbjct: 567 -----FVHLAPGATL-----------------------DDALLDRIKRTIRAGLSPRHVP 598
Query: 696 KLSTSVTGLPRTRSGKTARKSIVDMARNKPLRVR 729
V G+P T +GK ++ + + P+
Sbjct: 599 DEIIEVPGIPHTLTGKRVEVAVKRVLQGTPVDNP 632
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 6e-06
Identities = 79/365 (21%), Positives = 117/365 (32%), Gaps = 95/365 (26%)
Query: 261 YILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDM 320
Y++YTSG+TG+ PKG G + L T Y + DV +
Sbjct: 1722 YVIYTSGSTGR------------PKGAGNRHGALVNRLCATQEA-YQLSAADVVLQFTSF 1768
Query: 321 GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRR 380
+ V + + PL G V+ P DP Q ++I +V L P+ L+ + +
Sbjct: 1769 AFDVSVWEL-FWPLINGARLVI--APPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQ 1825
Query: 381 EDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWWQTETGHSITAHC 439
D SLR + GE + E + W E+ + + N + TET
Sbjct: 1826 MD-----EQVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTET-------- 1872
Query: 440 LGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATH 499
V + T C R E R +VP GQ
Sbjct: 1873 ------AVDVTHWT-------------------------CRRKDLEG-RDSVPIGQ---- 1896
Query: 500 FTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLY-----------KAP----QRF 544
I N + L P+P G LY P +RF
Sbjct: 1897 -------PIANLSTYILDASLN------PVPIGVAGELYLGGVGLARGYLNRPALTAERF 1943
Query: 545 MKIYFTKFPG-YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVG 603
+ F Y T D Y +G I R D + + G R+ +E + V
Sbjct: 1944 VADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVR 2003
Query: 604 DTAVI 608
+ VI
Sbjct: 2004 EAVVI 2008
|
Length = 3956 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 7e-06
Identities = 53/219 (24%), Positives = 77/219 (35%), Gaps = 64/219 (29%)
Query: 504 EVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLY--KAPQRFMKIYFTKFPGYYDTMDA 561
E+ I G +G I V+ P MS + + Q + G+ DT D
Sbjct: 395 EIEIRNEAGMPLPERVVGHICVR---GPSLMSGYFRDEESQDVLAA-----DGWLDTGDL 446
Query: 562 GYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDV--GDTAVIGVPEPTKGEIP 619
GY +GY+Y+T R D+I + G + +E + P++ GD A + + GE
Sbjct: 447 GYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKI 504
Query: 620 FCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEE--- 676
L + C SDEE
Sbjct: 505 VLL---------------------------------------------VQCRISDEERRG 519
Query: 677 -IGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTAR 714
+ L LVR G AA +L + LPRT SGK +R
Sbjct: 520 QLIHALAALVRSEFGVEAAVELVPPHS-LPRTSSGKLSR 557
|
Length = 579 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 7e-06
Identities = 45/174 (25%), Positives = 69/174 (39%), Gaps = 37/174 (21%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
T+A++ +Q +A +L ++G+ GDR+ I E I++ LA G + ++ A
Sbjct: 8 TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTA 67
Query: 171 RELCARLEHAKPKVII--------AASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQ 222
+ LEH+ K + A GV TI+
Sbjct: 68 ETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEG----LPTIILFPYSTLKDHYK------ 117
Query: 223 RRCVEEAELTPGYDILWDDALA--QRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
WDD LA + L R +P E D I+YTSGTTG+P+G
Sbjct: 118 ----------------WDDLLAATEPLQGRPLP-EPEDLATIVYTSGTTGQPKG 154
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 8e-06
Identities = 48/202 (23%), Positives = 73/202 (36%), Gaps = 59/202 (29%)
Query: 519 ELGRIVVKLPLPPGTMSTLY---KAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTAR 575
E+G +V P P +M + R+ YF FPG + D +G + + R
Sbjct: 435 EVGELVCTKPFP--SMPLYFWNDPDGSRYRDAYFDTFPGVWRHGDWIKITPHGGVIIYGR 492
Query: 576 DDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGF 635
D +N G R+ T+ + VV P+V D+ V+G E R+PL
Sbjct: 493 SDATLNPGGVRIGTAEIYRVVEKIPEVEDSLVVGQEVDDGDE---------RMPL----- 538
Query: 636 SGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGP---- 691
F KL +L D+ + K ++ +R A+ P
Sbjct: 539 -----FVKLREGVTL-----------------------DDALVKRIRSAIRAALSPRHVP 570
Query: 692 --IAAFKLSTSVTGLPRTRSGK 711
I A V +P T SGK
Sbjct: 571 AEIIA------VPDIPYTLSGK 586
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 8e-06
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
R+++YAE + A +L A+GV GD V + M PE +++ LA +LGA+ +++
Sbjct: 2 RRLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINTT 61
Query: 168 FAARELCARLEHAKPKVIIAASC 190
L + + + +I
Sbjct: 62 QRGEVLAHCINVSDARAVIVDPA 84
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 8e-06
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 16/132 (12%)
Query: 502 SVEVRIIRNDGSECEPHEL--GRIVVKLPL-------PP-----GTMSTLYKAPQRFMKI 547
S+E RI+ NDG E + G I V+ P G ST
Sbjct: 366 SLEYRIV-NDGQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDAND 424
Query: 548 YFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAV 607
FT G+ T D G +G++ + R DVI G + ++ LE+ +++ P+V + AV
Sbjct: 425 RFTA-DGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAV 483
Query: 608 IGVPEPTKGEIP 619
IG P+ GE P
Sbjct: 484 IGYPDDKWGERP 495
|
Length = 576 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 9e-06
Identities = 39/168 (23%), Positives = 62/168 (36%), Gaps = 37/168 (22%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
R+ TYAEL V LA L G G+R+ + + A R+GAI+ +
Sbjct: 21 RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWR 80
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKP-DYCIIFQRRCV 226
+A EL A L+ A+P++++ ++A+ D
Sbjct: 81 LSASELDALLQDAEPRLLLG-----------------DDAVAAGRTDVEDLAAFIASADA 123
Query: 227 EEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
E TP + IL+TSGT+G+P+G
Sbjct: 124 LEPADTP-------------------SIPPERVSLILFTSGTSGQPKG 152
|
Length = 488 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 9e-06
Identities = 84/338 (24%), Positives = 126/338 (37%), Gaps = 67/338 (19%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
+ YAEL Q + LA L GV V I P+ +V +LA ++ G + + +
Sbjct: 1157 LDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAYVPLDPDYP 1216
Query: 170 ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEA 229
A L L A GVE ++ ++ L E L + I ++
Sbjct: 1217 AERLAYML----------ADSGVE---LLLTQSHLLERLPQA---EGVSAI----ALDSL 1256
Query: 230 EL------TPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQ 283
L PG L D LA Y++YTSG+TG Q
Sbjct: 1257 HLDSWPSQAPGLH-LHGDNLA----------------YVIYTSGSTG------------Q 1287
Query: 284 PKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMY 343
PKG+ L W M Y + DV + + + V + C+ PL G V+
Sbjct: 1288 PKGVGNTHAALAERLQW-MQATYALDDSDVLMQKAPISFDVS-VWECFWPLITGCRLVL- 1344
Query: 344 EGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAG 403
P DP + ++ + V L P L++ E L A + SLR LF G
Sbjct: 1345 -AGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDE----PLAAACT--SLRRLFSGG 1397
Query: 404 EHCDHETKNWA-EKSFNVTMLNHWWQTETGHSITA-HC 439
E E +N ++ V + N + TET ++T C
Sbjct: 1398 EALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQC 1435
|
Length = 4334 |
| >gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 553 PGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPE 612
G ++T D GY D GY+++ R+ I G + + +E +L+ V D V+G+P+
Sbjct: 323 QGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPD 382
Query: 613 PTKGEIPFCLYIKK 626
P GE+ +Y+ K
Sbjct: 383 PHWGEVVTAIYVPK 396
|
Length = 452 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGA 159
+TYAEL + + LA L A GV RV + + P+ +V++LA ++ GA
Sbjct: 23 ESLTYAELNRRANRLAARLRAAGVGPESRVGVCLRRSPDLVVALLAVLKAGA 74
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 20/66 (30%), Positives = 40/66 (60%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G+ T D GY D++ +++ R ++I G +++ + LE +++SHP + D AV+ + +
Sbjct: 412 GWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDE 471
Query: 614 TKGEIP 619
GE+P
Sbjct: 472 VAGEVP 477
|
Length = 537 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 41/173 (23%), Positives = 68/173 (39%), Gaps = 50/173 (28%)
Query: 240 DDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLA 299
+DA A R V + +D Y++YTSG+TG +PKG+ A L
Sbjct: 93 EDAGA-----RLVLTDPDDLAYVIYTSGSTG------------RPKGVAIEHRNAAALLQ 135
Query: 300 WTMSVIYNMGQDDVWWTASDMGWVVGHSYICY--------GPLAAGITSVMYEGKPDRTP 351
W +V ++A ++ V+ + IC+ PL+ G V+ +
Sbjct: 136 WAAAV----------FSAEELAGVLAATSICFDLSVFEIFVPLSTGGRVVLADNALALPD 185
Query: 352 DPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGE 404
P +V + T P+A R + R D + S+R + +AGE
Sbjct: 186 LP-------AKAEVTLINTVPSAARELLRHDALPS--------SVRTVNLAGE 223
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 94/449 (20%), Positives = 150/449 (33%), Gaps = 100/449 (22%)
Query: 255 EANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMG--QDD 312
+D +I ++SG+TG+P+G IL H L ++I +D
Sbjct: 104 LPDDIAFIQFSSGSTGEPKGV-----------ILT----HKNLLTNIEAIIEAAEITSED 148
Query: 313 V---WWTAS-DMGWVVGHSYICYGPLAAGITSVMYEGKPDRT--PDPSQYYRVIHNHKVN 366
V W + DMG + H P A GI + P R P + H+
Sbjct: 149 VFLSWMPLTHDMGLIGFH----LTPTALGINQYLM---PTRLFIRRPLLWLDKASQHRAT 201
Query: 367 GLFTAPTALRVIRREDKDSTLGAQYSTD--SLRYLFVAGEHCDHETKNWAEKSFNVTMLN 424
L + + + + K D S+R +F E + + F M
Sbjct: 202 ILSSPNFGYKYLLKHFKTEK---IIDWDLSSVRLIFNGAEPISADLC----EEFLEKM-- 252
Query: 425 HWWQTETGHSITAHCLGYQHDTVPPKYSTGL---------PFPGYDGKYVNIVMLNWLDG 475
G + + + P Y GL P PG K V +
Sbjct: 253 -------------APFGLRPNAMYPVY--GLAEATLAVSFPKPGEPFKTVCL-------D 290
Query: 476 RAHCVRILPESLRKNVPKGQNATHFTSV-------EVRIIRNDGSECEPHELGRIVVKLP 528
R H + + + PK +A F V E+RI+ + G +G I +K
Sbjct: 291 RNHLK--VGVKIIEIDPKNSDAISFVEVGSPIDGCEIRIVDDAGEVLPDRTIGHIQIK-- 346
Query: 529 LPPG-TMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRL 587
G +++ Y K T G+ T D G+ NG + +T R D+I V G
Sbjct: 347 ---GDNVTSGYYNNPEATKKSITP-DGWLKTGDLGFL-RNGRLVITGRAKDIIIVNGQNY 401
Query: 588 STSALEDVVLSHPDV--GDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLE 645
+E V + G A GV + + ++++ R LD F L
Sbjct: 402 YPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVIFVEYRQSLDD--------FTPLA 453
Query: 646 RP-TSLLTNPIRVLIKPYGPISSIYCTRS 673
+ + + I P+ SI T S
Sbjct: 454 LKIKRHVNKKMGLNIDHVIPVRSIPKTTS 482
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 7e-05
Identities = 109/553 (19%), Positives = 183/553 (33%), Gaps = 123/553 (22%)
Query: 82 AIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYM 141
A+ R E + + I S +YAEL E+ + L A+G+ GD V++
Sbjct: 15 ALQRAAEHAPGRGITYID---ADGSEEFQSYAELLEEAERILAGLRALGLKPGDSVIL-- 69
Query: 142 PLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYK 201
+ V A + V GGF + A P + V K+
Sbjct: 70 -----QLERNEDFVT--AFWACVLGGFVPVPV------AVPPTYDEPNAAV--AKLRNIW 114
Query: 202 TILNEALEISSC--KPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDP 259
+L + ++ A L + ++ + P +DP
Sbjct: 115 ELLGSPVILTDAALVAAL-----AGLRTRAGLEALRVLAIEELRSAPPDAPLHPARPDDP 169
Query: 260 LYILYTSGTTGKPQGCSELRSEDQPKGIL-RPVGGHIATLAWTMSVIYNMGQDDVW--WT 316
+L TSG+TG P+ C L + IL R G + DDV W
Sbjct: 170 ALLLLTSGSTGVPK-CVVLTH----RNILARSAG---------TVQVNGFTPDDVSLNWM 215
Query: 317 ASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTP----DPSQYYRVIHNHKVNGLFTAP 372
D V G + + G + T DP ++ +I ++V + AP
Sbjct: 216 PLDH--VGGIVMLHLRDVYLGCQQIHVP-----TDYILADPLRWLDLIDRYRVTITW-AP 267
Query: 373 T-ALRVIR-REDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNH----- 425
A ++ ++ + SLRY+ AGE +T + F + +
Sbjct: 268 NFAFALLNDALERIE--DRSWDLSSLRYIINAGEAVVAKT---IRR-FLELLAPYGLPAD 321
Query: 426 -----WWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCV 480
+ +ET +T Y + G+ G
Sbjct: 322 AIRPAFGMSETCSGVT-----YSRGFRTGPDTGGVLVDSLTGP----------------- 359
Query: 481 RILPESLRKNVPKGQNATHFTS-------VEVRIIRNDGSECEPHELGRIVVKLPLPPGT 533
LR A F V +RI+ DG+ E+GR+ V+ P T
Sbjct: 360 ------LRFAAADHPEAVTFVELGRPIPGVAIRIVDEDGALLPEGEVGRLQVRGP----T 409
Query: 534 MSTLY----KAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLST 589
+++ Y +A FT+ G++ T D G+ +G + +T R+ D+I + G
Sbjct: 410 VTSGYYRNPEANAEA----FTE-DGWFRTGDLGFLH-DGRLTITGREKDMIIINGVNYYN 463
Query: 590 SALEDVVLSHPDV 602
+E V P V
Sbjct: 464 HEIEAAVEQVPGV 476
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 9e-05
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVI-NVAGHRLSTSALEDVVLSHPDVGDTAVIG 609
G+ T D G DE+G++ +T R D+I G ++ +E+ + + P + V+G
Sbjct: 311 GWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVG 367
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 76 INACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAA-IGVSAG 134
+N +DRHV G + TY +L ++ + +A L +GV G
Sbjct: 33 LNCAAELLDRHVHNGRGNRPCFRTFE------ETWTYQDLLDRANRIAHVLVEDLGVVPG 86
Query: 135 DRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAAREL-----CARLEHA 180
+RVL+ P + LA ++ GAI A+EL AR+ HA
Sbjct: 87 NRVLLRSANTPMLVACWLAVLKAGAIVVTTMPLLRAKELTTIVDKARITHA 137
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 56/295 (18%), Positives = 103/295 (34%), Gaps = 57/295 (19%)
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
I+ V R + AL+ ++++YAEL + + LA L AIGV V + +
Sbjct: 3101 IEAQVAR-TPEAPALVFGD------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVE 3153
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202
E IV++LA ++ G + + + L +E + K+++ + +E T
Sbjct: 3154 RSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDT 3213
Query: 203 ILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPL-Y 261
L L L + + L Y
Sbjct: 3214 AL--------------------------------TLDRLDLNGYSENNPSTRVMGENLAY 3241
Query: 262 ILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMG 321
++YTSG+TGKP+G G +A ++ Y + +D
Sbjct: 3242 VIYTSGSTGKPKGVGVRH-------------GALANHLCWIAEAYELDANDRVLLFMSFS 3288
Query: 322 WVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALR 376
+ L G V+ + + DP + ++ IH H+++ P L+
Sbjct: 3289 FDGAQERF-LWTLICGGCLVV---RDNDLWDPEELWQAIHAHRISIACFPPAYLQ 3339
|
Length = 3956 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 48/230 (20%), Positives = 95/230 (41%), Gaps = 40/230 (17%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
TY ++ E+V A L A+G + +RV I+ E ++++ R ++
Sbjct: 108 TYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGE 167
Query: 171 RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAE 230
LC L + +I C + + K +++ + ++ + K + + + +
Sbjct: 168 EALCHSLNETEVTTVI---CDSK-----QLKKLIDISSQLETVKRVIYMDDEGVDSDSSL 219
Query: 231 LTPGYDILWDDALAQRLSHRCVPVEANDPL-----YILYTSGTTGKPQGCSELRSEDQPK 285
+ + ++L + PV+ + P I+YTSG+TG PK
Sbjct: 220 SGSSNWTVSSFSEVEKLG-KENPVDPDLPSPNDIAVIMYTSGSTG------------LPK 266
Query: 286 GILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLA 335
G++ G +AT+A M+V+ +G++DV Y+ Y PLA
Sbjct: 267 GVMMTHGNIVATVAGVMTVVPKLGKNDV--------------YLAYLPLA 302
|
Length = 696 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 14/120 (11%)
Query: 503 VEVRIIRNDGSECEPHELGRIVVKLP-LPPG--TMSTLYKAPQRFMKIYFTKFPGYYDTM 559
+EVR++ DG P +G I ++ + PG TM A G+ DT
Sbjct: 369 LEVRVVDEDGQVLPPRGVGVIELRGESVTPGYLTMDGFIPAQDA---------DGWLDTG 419
Query: 560 DAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDV--GDTAVIGVPEPTKGE 617
D GY E G + V R DVI +AG + + +E V G+ + + E
Sbjct: 420 DLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSRE 479
|
Length = 545 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 55/196 (28%), Positives = 81/196 (41%), Gaps = 47/196 (23%)
Query: 95 VALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAI-----V 149
A+IH R+ T+AE + LA +LA G+ GD V + +P IP + V
Sbjct: 35 PAVIHGD------RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGV 88
Query: 150 SMLATV------RLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTI 203
M V RL A S+ F L H + KV+I + E +V R
Sbjct: 89 PMAGAVLNTLNTRLDA-ASIAF----------MLRHGEAKVLIVDT---EFAEVAR---- 130
Query: 204 LNEALEISSCKPDYCIIFQRRCVEEAELTPGY---DILWDDALAQRLSHRCVPVEAN--D 258
EAL + P +I V++ E G + ++ LA + A+ D
Sbjct: 131 --EALALLPG-PKPLVID----VDDPEYPGGRFIGALDYEAFLASGDPDFAWTLPADEWD 183
Query: 259 PLYILYTSGTTGKPQG 274
+ + YTSGTTG P+G
Sbjct: 184 AIALNYTSGTTGNPKG 199
|
Length = 545 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 56/251 (22%), Positives = 91/251 (36%), Gaps = 59/251 (23%)
Query: 99 HDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158
+D P + VT+ ++ + + L L G+S+GDRVL+ +P P+ + +LA + G
Sbjct: 20 YDRPAFYAADVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARG 79
Query: 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYC 218
+ F A R +HA AL ++S
Sbjct: 80 VM------AFLANPELHRDDHALAARNTEP------------------ALVVTS--DALR 113
Query: 219 IIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSEL 278
FQ V EA +++ + A + P+ + Y YTSGTTG P+
Sbjct: 114 DRFQPSRVAEAA-----ELMSEAARVAPGGYE--PMGGDALAYATYTSGTTGPPKAA--- 163
Query: 279 RSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYG------ 332
I A ++ + M + + T D G Y YG
Sbjct: 164 ----------------IHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVW 207
Query: 333 -PLAAGITSVM 342
PLA G ++V+
Sbjct: 208 FPLATGGSAVI 218
|
Length = 705 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 68/280 (24%), Positives = 105/280 (37%), Gaps = 41/280 (14%)
Query: 110 VTYAELQEQVSLLAGSLA-AIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF 168
++Y+ELQ V +A L +GV GD VL+ +P V LA + LG I + +
Sbjct: 67 ISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSS 126
Query: 169 AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTIL-NEALEISSCKPDYCIIFQRRCVE 227
+ E+ R+ + + VE + I E + S + ++ F E
Sbjct: 127 SLGEIKKRVVDCSVGLAFTSPENVEKLSPLGVPVIGVPENYDFDSKRIEFPK-FYELIKE 185
Query: 228 EAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGI 287
+ + P I DD A I+Y+SGTTG KG+
Sbjct: 186 DFDFVPKPVIKQDDVAA-----------------IMYSSGTTGA------------SKGV 216
Query: 288 LRPVGGHIATLA----WTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMY 343
+ IA + + S G D+V+ A M + G S G L+ G T V+
Sbjct: 217 VLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVM 276
Query: 344 EGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDK 383
R D S +VI KV P L + ++ K
Sbjct: 277 -----RRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAK 311
|
Length = 560 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 3e-04
Identities = 68/292 (23%), Positives = 119/292 (40%), Gaps = 54/292 (18%)
Query: 109 KVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL-GAIHSVVFGG 167
+ T+ + ++ LA SL ++ ++ D V + P P A+ M V + GA+ + +
Sbjct: 39 RFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTP-AMYEMHFAVPMAGAVLNPINTR 97
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISS---CKPDYCIIFQRR 224
A + A L HAKPK++ ++ + E L + S + +IF
Sbjct: 98 LDATSIAAILRHAKPKILFVDR---------SFEPLAREVLHLLSSEDSNLNLPVIF--- 145
Query: 225 CVEEAELT--PGYDILWDDALAQR------LSHRCVPVE-ANDPLYILYTSGTTGKPQGC 275
+ E + P + L + L QR L R ++ +DP+ + YTSGTT P+G
Sbjct: 146 -IHEIDFPKRPSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGV 204
Query: 276 SELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVW-WTASDM---GWVVGHSYICY 331
++ G +++TL+ + + MG V+ WT GW +
Sbjct: 205 -----------VISHRGAYLSTLSAIIG--WEMGTCPVYLWTLPMFHCNGWT-----FTW 246
Query: 332 GPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDK 383
G A G TSV R + Y+ I H V + PT ++ + +
Sbjct: 247 GTAARGGTSVCM-----RHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNS 293
|
Length = 579 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 4e-04
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 22/124 (17%)
Query: 503 VEVRII-RNDGSECEPHELGRIVVKLP--------LPPGTMSTLYKAPQRFMKIYFTKFP 553
V +R+ G+E P E+G I VK P +P T F
Sbjct: 330 VSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEE------------FRA-D 376
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G++ T D G DE GY+++ R D+I G+ + +E + P V ++AVIGVP P
Sbjct: 377 GFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHP 436
Query: 614 TKGE 617
GE
Sbjct: 437 DFGE 440
|
Length = 504 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 16/126 (12%)
Query: 500 FTSVEVRIIR---------NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQ--RFMKIY 548
VEVRII +D E+G IVV P+ + Y P+ R KI
Sbjct: 358 VDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPM---VTRSYYNRPEATRLAKI- 413
Query: 549 FTKFPGYYDTM-DAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAV 607
+ M D GY D G ++ R + AG L T E + +HP V +A+
Sbjct: 414 PDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSAL 473
Query: 608 IGVPEP 613
+GV P
Sbjct: 474 VGVGVP 479
|
Length = 552 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 47/178 (26%), Positives = 69/178 (38%), Gaps = 32/178 (17%)
Query: 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAA 170
TY E+ E+V + +L A G G RV IY P+ IV+M A I ++
Sbjct: 78 TYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGP 137
Query: 171 RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQR------- 223
+ ++HA+ + V+ K+ K +L PD C +R
Sbjct: 138 GAVDYIVDHAEIDFVF-----VQDKKI---KELLE---------PD-CKSAKRLKAIVSF 179
Query: 224 RCVEEAELTPGYDI-----LWDDAL--AQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
V E E I W D L + P + D I+YTSGT+G P+G
Sbjct: 180 TSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKG 237
|
Length = 660 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 21/139 (15%)
Query: 491 VPKGQNATHFTSVEVR----IIRNDGSECEP--HELGRIVVKLPLPPGTMSTLYKAPQRF 544
V KG T + ++ DG+ EP E+G I + +P G YK P++
Sbjct: 342 VAKGAVHTGGPRFTIGPRTVVLDEDGNPVEPGSGEIGWIARRGHIPLG----YYKDPEKT 397
Query: 545 MKIYFTK------FPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLS 598
+ + T PG ++A G I + R IN G ++ +E+ + +
Sbjct: 398 AETFPTIDGVRYAIPGDRARVEAD-----GTITLLGRGSVCINTGGEKVFPEEVEEALKA 452
Query: 599 HPDVGDTAVIGVPEPTKGE 617
HPDV D V+GVP+ G+
Sbjct: 453 HPDVADALVVGVPDERWGQ 471
|
Length = 533 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 8e-04
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G++ + D G +GYI + R D+I G +S+ +E+VV +HP V + +V+ P+
Sbjct: 430 GWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDE 489
Query: 614 TKGEIPFCLYI 624
GE P C ++
Sbjct: 490 RWGESP-CAFV 499
|
Length = 567 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 9e-04
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 555 YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPT 614
Y T D + +G I R D + + G R+ +E +L HP V + AV+ V E
Sbjct: 359 LYRTGDLARWRPDGNIEFLGRIDRQVKIRGFRIELGEIEQALLQHPGVREAAVL-VREDA 417
Query: 615 KGEIPFCLYIKKRIPLD 631
G+ Y+ R LD
Sbjct: 418 AGDKRLVAYVVARGALD 434
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 89 RGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAI 148
R VA++ D K+TYAEL + + LA +L A GV V I M E +
Sbjct: 4562 RMTPDAVAVVFDE------EKLTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMM 4615
Query: 149 VSMLATVRLGAIH 161
V +LA ++ G +
Sbjct: 4616 VGLLAVLKAGGAY 4628
|
Length = 5163 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 10/121 (8%)
Query: 503 VEVRIIRNDGS-ECEPHELGRIVVKLPLPPGTMSTLYKAP----QRFMKIYFTKFPGYYD 557
EVRI+ + E+G I V+ P + + P + F T G+
Sbjct: 364 HEVRIVDPETRRPLPDGEVGEIWVR---GPSVAAGYWNRPEATAETFGARLATDEGGWLR 420
Query: 558 TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVV-LSHPDVGDTAVIGVPEPTKG 616
T D G+ + G +YVT R D+I + G +E V +HP + A G
Sbjct: 421 TGDLGFLHD-GELYVTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFSVDGDG 479
Query: 617 E 617
E
Sbjct: 480 E 480
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
Query: 531 PGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVI------NVAG 584
P M YK P+ + FT+ G++ T D G DE+GY+ +T R ++I N+A
Sbjct: 428 PNVMKGYYKNPEATAEA-FTE-DGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIA- 484
Query: 585 HRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
+E + P + V+G +
Sbjct: 485 ----PEPIESKLAKSPLIEQICVVGDDKK 509
|
Length = 613 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.002
Identities = 38/145 (26%), Positives = 56/145 (38%), Gaps = 45/145 (31%)
Query: 503 VEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTL----YKAPQRFMKIYFTKFPGYYD- 557
+EV+I+ +P E G V P G L Y MK GY++
Sbjct: 380 LEVKIV-------DP-ETGETV-----PRGEQGELCTRGYSV----MK-------GYWND 415
Query: 558 ---------------TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDV 602
T D DE GY+ + R D+I G + +E+ + +HP +
Sbjct: 416 PEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKI 475
Query: 603 GDTAVIGVPEPTKGEIPFCLYIKKR 627
D V+GVP+ GE C +I R
Sbjct: 476 QDVQVVGVPDEKYGEE-VCAWIILR 499
|
Length = 559 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 5/105 (4%)
Query: 514 ECEPHELGRIVVKLPLPPGTMSTLY----KAPQ-RFMKIYFTKFPGYYDTMDAGYYDENG 568
E G ++ ++ + Y A + + ++ F K +Y T D D +G
Sbjct: 293 RAPVGEPGEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADG 352
Query: 569 YIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
Y R D +ST + DV+ + P V + V GV P
Sbjct: 353 RWYFLDRLGDTFRWKSENVSTGEVADVLGAIPSVAEANVYGVKVP 397
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 21/175 (12%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
R +TYAEL E++ LA +G++ G V IY E + S+ + + V+
Sbjct: 120 RYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYAN 179
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPN--KVVRYKTILNEALEISSCKPDYCIIFQRRC 225
L L + K I+ V PN ++++ + N I
Sbjct: 180 LGEDALAYALRETECKAIVCNGKNV-PNLLRLMKSGGMPN------------TTIIYLDS 226
Query: 226 VEEAELTPGYDIL-WDDALA---QRLSHRCVPV-EANDPL-YILYTSGTTGKPQG 274
+ + T G ++ W D +A SH + + E ND L I+YTSGTTG P+G
Sbjct: 227 LPASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKG 281
|
Length = 700 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 12/177 (6%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
+ +TY EL E LA L + G++ G RV I MP + + V++ A +R G + V
Sbjct: 47 KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPL 106
Query: 168 FAARELCARLEHAKPKVIIA----ASC--GVEPNKVVRYKTI--LNEALEISSCKPDYCI 219
+ REL +L+ + + I+ A+ V V++ + + + L ++ +
Sbjct: 107 YTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVV 166
Query: 220 IFQRRCVEEAELTPGYDILWDDALAQ--RLSHRCVPVEANDPLYILYTSGTTGKPQG 274
++ V L PG+ + ++DALA+ R + + V + +D ++ YT GTTG +G
Sbjct: 167 RRVKKMVPAWSL-PGH-VRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKG 221
|
Length = 557 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.003
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 7/38 (18%)
Query: 244 AQRLSH-------RCVPVEANDPLYILYTSGTTGKPQG 274
A+RL + + + +D Y++YTSG+TGKP+G
Sbjct: 73 AERLQYMLEDAEPALLLTDPDDLAYVIYTSGSTGKPKG 110
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 38/165 (23%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
++Y +L ++V LLA L A+GV R+ + + + +++ LA ++ G + + F+
Sbjct: 3 LSYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFFS 59
Query: 170 ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEA 229
A + +H + G + ++++ + +S A
Sbjct: 60 A----QQTQH------LLNDAGAD--------LLISDDPDAAS----------------A 85
Query: 230 ELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQG 274
TP + D +A R S V + A I YTSG+TG+P+G
Sbjct: 86 LHTPFATLGEDLYIALRPSANPVELPA-GTAKITYTSGSTGQPKG 129
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 17/170 (10%)
Query: 111 TYAELQEQVSLLAGSLA-AIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
T+A + + + LA +L +G++ RV M E + + A +GA+ + +
Sbjct: 40 TFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLM 99
Query: 170 ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRC---V 226
++ + HA+ +VI+A +P + IL E C ++F
Sbjct: 100 NDQIVHIINHAEDEVIVA-----DPRLAEQLGEILKE------CPCVRAVVFIGPSDADS 148
Query: 227 EEAELTPGYDIL-WDDALAQRLSHRCVP-VEANDPLYILYTSGTTGKPQG 274
A + G + ++ L R + P ++ I Y++GTTG P+G
Sbjct: 149 AAAHMPEGIKVYSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKG 198
|
Length = 576 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.004
Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 28/177 (15%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
R++TYAE E+V +A +L G+SA ++I E + LA + G ++ V
Sbjct: 68 RRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVSPA 127
Query: 168 FA--ARELCARLEHA----KPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIF 221
++ +++ +L H P ++ A + R AL + D ++
Sbjct: 128 YSLVSQDF-GKLRHVLELLTPGLVFAD----DGAAFAR-------ALA-AVVPADVEVVA 174
Query: 222 QRRCVEEAELTPGYDILWDDALAQRLSHRCVP----VEANDPLYILYTSGTTGKPQG 274
R V TP + LA + V + L+TSG+TG P+
Sbjct: 175 VRGAVPGRAATP-----FAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKA 226
|
Length = 614 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 737 | |||
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| KOG1175|consensus | 626 | 100.0 | ||
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| KOG1176|consensus | 537 | 100.0 | ||
| KOG1177|consensus | 596 | 100.0 | ||
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1256|consensus | 691 | 100.0 | ||
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| KOG1180|consensus | 678 | 100.0 | ||
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| KOG1179|consensus | 649 | 100.0 | ||
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| KOG3628|consensus | 1363 | 100.0 | ||
| KOG1178|consensus | 1032 | 100.0 | ||
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.96 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.93 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.91 | |
| KOG3628|consensus | 1363 | 99.9 | ||
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.84 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.65 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 99.29 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.64 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 98.33 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 97.55 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 97.4 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 97.08 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 96.93 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 93.48 |
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-91 Score=763.93 Aligned_cols=520 Identities=36% Similarity=0.622 Sum_probs=476.1
Q ss_pred CCCCCCchhHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEecCCHHH
Q psy8076 69 KWFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAA-IGVSAGDRVLIYMPLIPEA 147 (737)
Q Consensus 69 ~~~~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~~~~e~ 147 (737)
+||.++.+|.++|+++++....++|++|+++.++..+. +++||+||.++++++|+.|++ .|+ +||||+|+||+.+|+
T Consensus 1 ~wf~~~~lN~~~n~~dr~~~~~~~~~~aii~~~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~ 78 (528)
T COG0365 1 KWFEGGTLNLALNALDRHLEADRPDDTAIIFDGEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEA 78 (528)
T ss_pred CCcCCceeechhhhhhhhhhccCCCceEEEEEcCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHH
Confidence 59999999999999999998776899999999865444 999999999999999999987 578 999999999999999
Q ss_pred HHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEeccccc
Q psy8076 148 IVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE 227 (737)
Q Consensus 148 vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~ 227 (737)
+++||||+++||+++|+.+.++++.+..++++++++++|+++...+.++.+.++..++.++.. ++++...
T Consensus 79 ~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~-------~iv~~r~--- 148 (528)
T COG0365 79 VIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSS-------VVVVPRL--- 148 (528)
T ss_pred HHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcc-------eEEeccc---
Confidence 999999999999999999999999999999999999999999999999999998888876543 5555543
Q ss_pred ccccCCCCcccHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhh
Q psy8076 228 EAELTPGYDILWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIY 306 (737)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~ 306 (737)
.++|.+....... .+..+.+++|++|++||||||| +||||+|+|++++....+.+...+
T Consensus 149 --------~~~~~~~~~~~~~~~~~~~~~~~dpl~ilYTSGTTG------------~PKgv~H~~gg~l~~~~~~~~~~~ 208 (528)
T COG0365 149 --------GLWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTG------------KPKGIVHSHGGYLVEHRLTAKFHG 208 (528)
T ss_pred --------cccHHHHhhccCCCCCccccCCCCeEEEEeCCCCCC------------CCceEEEeCchHHHHHHHHHHHhh
Confidence 1777777766543 5566799999999999999999 999999999999999998888899
Q ss_pred cCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCc
Q psy8076 307 NMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDST 386 (737)
Q Consensus 307 ~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~ 386 (737)
++.++|+++++++++|++|+.+.++++|.+|++++++++.+. . ++++++++|+++++|+++++|+.+++|.+... .
T Consensus 209 ~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~-~-~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~--~ 284 (528)
T COG0365 209 DLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPF-Y-SPERLWEALEKYKVTIFGTSPTFLRRLMKLGL--G 284 (528)
T ss_pred CCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCC-C-CHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC--c
Confidence 999999999999999999999989999999999999999887 4 89999999999999999999999999999876 1
Q ss_pred cccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcce
Q psy8076 387 LGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVN 466 (737)
Q Consensus 387 ~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~ 466 (737)
.++++++||.+.++||||++++++|+.+.+|+++.+.||+||+|+...... . +.++ ++.|+|+||++
T Consensus 285 --~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~----~-~~~~-g~~g~p~pG~~----- 351 (528)
T COG0365 285 --EPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGR----P-PVKN-GSSGLPLPGYA----- 351 (528)
T ss_pred --ccccchhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCC----C-CcCC-CCCCCCCCCce-----
Confidence 678999999999999999999999999999999999999999995444421 1 4444 44499999988
Q ss_pred eeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHH
Q psy8076 467 IVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMK 546 (737)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~ 546 (737)
+. |+|++|+++++|+ |+|+|+.||| +++++||+|++++.+
T Consensus 352 ~~--------------------------------------vvdd~g~~~~~~~-G~Lvi~~~~p-~~~~~~w~d~er~~~ 391 (528)
T COG0365 352 VR--------------------------------------RVDDEGNPVPPGV-GELVVRLPWP-GMALTYWNDPERYKE 391 (528)
T ss_pred eE--------------------------------------EECCCCCcCCCCc-eEEEEeCCCc-hhhhhhhCCHHHHHH
Confidence 77 9999999999999 9999999999 999999999999999
Q ss_pred hhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEee
Q psy8076 547 IYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKK 626 (737)
Q Consensus 547 ~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~ 626 (737)
.|+.. ||.|||.+++|+||+++|+||.||+||+.|+||.+.|||++|.+||.|.||+||+++++..|+.++|||+++
T Consensus 392 ~y~~~---~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~ 468 (528)
T COG0365 392 AYFGR---WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLA 468 (528)
T ss_pred HHhhc---eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEec
Confidence 99864 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCC
Q psy8076 627 RIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPR 706 (737)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~ 706 (737)
++ .. .. +++++|++++++.+.+++.|+.+.++++|||
T Consensus 469 ~g------------~~------------------------------~~-~L~~ei~~~vr~~~~~~~~p~~i~fv~~LPk 505 (528)
T COG0365 469 AG------------VE------------------------------PN-ELAEEIRRHVARNIGPHAIPRKIRFVDELPK 505 (528)
T ss_pred CC------------CC------------------------------hH-HHHHHHHHHHHhccCcccCCceEEEecCCCC
Confidence 98 32 22 8999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHcC
Q psy8076 707 TRSGKTARKSIVDMARN 723 (737)
Q Consensus 707 t~sGKi~R~~l~~~~~~ 723 (737)
|+||||+|+.||+.+.+
T Consensus 506 T~sGKI~R~~lr~~~~~ 522 (528)
T COG0365 506 TASGKIQRRLLRKILHK 522 (528)
T ss_pred CCcccHHHHHHHHHHhh
Confidence 99999999999999884
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-89 Score=796.06 Aligned_cols=615 Identities=34% Similarity=0.628 Sum_probs=517.0
Q ss_pred cccccccccccCC-hhHHHHHHHHHhhChhhHHHHHHhhcccccCcc--ccccC-C----CCCCCCCCCCCchhHHHHHH
Q psy8076 12 FSGNKINECTSNQ-NDKYYDAYRKSIEAPESFWTDVGNMATWSKKWD--RILDN-S----DQPFTKWFVGGEINACYNAI 83 (737)
Q Consensus 12 y~~~~~~~~~~~~-~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~--~~l~~-~----~~~~~~~~~~~~~n~~~~~l 83 (737)
+.++.|+...... +.+|.++++++++||+.||+++++.+.|.++++ ++++. . ..+..+||+++.+|+++++|
T Consensus 15 ~~~~~~~~~~~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~wf~g~~~N~~~~~l 94 (666)
T PLN02654 15 FPSKDFSAQALVSSPQQYMEMYKRSVDDPAGFWSDIASQFYWKQKWEGDEVCSENLDVRKGPISIEWFKGGKTNICYNCL 94 (666)
T ss_pred CCCHHHHhhccCCCHHHHHHHHHHHhcCHHHHHHHHHHhCCeecCCCcceEeccCCCcccCCccccccCCCEeeHHHHHH
Confidence 3445555444443 678999999999999999999999999999974 66532 1 12467999999999999999
Q ss_pred hhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEe
Q psy8076 84 DRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSV 163 (737)
Q Consensus 84 ~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vp 163 (737)
++|+++.+|+++|+++.++..+..+++||+||.++++++|++|+++|+++||+|+|+++|++|+++++|||+++|++++|
T Consensus 95 ~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Gav~vp 174 (666)
T PLN02654 95 DRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSV 174 (666)
T ss_pred HHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence 99987533999999986544455689999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCC---CCCeEEEEecccc---cccccCCCCcc
Q psy8076 164 VFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSC---KPDYCIIFQRRCV---EEAELTPGYDI 237 (737)
Q Consensus 164 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~viv~~~~~~---~~~~~~~~~~~ 237 (737)
+++.++.+++..++++++++++|+++.....++.+.++..+..++..... ....++....... ....+......
T Consensus 175 v~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (666)
T PLN02654 175 VFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEGRDV 254 (666)
T ss_pred cCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccccccccccCCcc
Confidence 99999999999999999999999999888888888888888776654321 1223333322100 00111122344
Q ss_pred cHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEE
Q psy8076 238 LWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWT 316 (737)
Q Consensus 238 ~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~ 316 (737)
.|+++...... .+.....++++++|+||||||| .||||+++|++++......+...++++++|++++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG------------~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~ 322 (666)
T PLN02654 255 WWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTG------------KPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWC 322 (666)
T ss_pred cHHHHhhcCCCCCCceecCCCCceEEEecCCCCC------------CCceEEecccHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 56665543221 2233467899999999999999 9999999999987776666777789999999999
Q ss_pred ecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCc
Q psy8076 317 ASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSL 396 (737)
Q Consensus 317 ~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~L 396 (737)
.+|++|++|+.+.++++|+.|++++++++.+. .+++..++++|+++++|+++++|++++.|.+...... ...++++|
T Consensus 323 ~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--~~~~l~~L 399 (666)
T PLN02654 323 TADCGWITGHSYVTYGPMLNGATVLVFEGAPN-YPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYV--TRHSRKSL 399 (666)
T ss_pred cCCchhhhhhHHHHHHHHHcCceEEEECCCCC-CCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCcccc--ccCChhhe
Confidence 99999999988878999999999999987665 5789999999999999999999999999988653221 45678999
Q ss_pred cEEEeecCCCCHHHHHHHHHhcC---CcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccc
Q psy8076 397 RYLFVAGEHCDHETKNWAEKSFN---VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWL 473 (737)
Q Consensus 397 r~i~~gGe~l~~~~~~~~~~~~~---~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~ 473 (737)
|.++++||++++++++++.+.+| +++.+.||+||+++..+.... ...+.++ +++|+|++|++ ++
T Consensus 400 r~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~--~~~~~~~-gs~G~p~~g~~-----v~----- 466 (666)
T PLN02654 400 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP--GAWPQKP-GSATFPFFGVQ-----PV----- 466 (666)
T ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCC--CCCCCCC-CccCCCCCCce-----EE-----
Confidence 99999999999999999999998 689999999999876554321 1123445 78888888888 77
Q ss_pred cCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCC
Q psy8076 474 DGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFP 553 (737)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~ 553 (737)
|+|++|++++.++.|||+|++|+| +++.|||++++++.+.|+..++
T Consensus 467 ---------------------------------i~d~~g~~~~~~~~Gel~v~~~~p-~~~~gy~~~~~~~~~~~~~~~~ 512 (666)
T PLN02654 467 ---------------------------------IVDEKGKEIEGECSGYLCVKKSWP-GAFRTLYGDHERYETTYFKPFA 512 (666)
T ss_pred ---------------------------------EECCCCCCCCCCCceEEEEcCCCc-hhhhhhcCChHHHHHhhhhcCC
Confidence 999999999999999999999876 9999999999999999888778
Q ss_pred CeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcC
Q psy8076 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKM 633 (737)
Q Consensus 554 g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~ 633 (737)
|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||.|.+++|++++++..|+.+++||+++++
T Consensus 513 g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~----- 587 (666)
T PLN02654 513 GYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEG----- 587 (666)
T ss_pred CEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCC-----
Confidence 999999999999999999999999999999999999999999999999999999999999899999999999875
Q ss_pred CccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhh
Q psy8076 634 GFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTA 713 (737)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~ 713 (737)
. ....++.++|+++++++|+.+++|+.++++++||+|+|||++
T Consensus 588 -------~------------------------------~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~ 630 (666)
T PLN02654 588 -------V------------------------------PYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIM 630 (666)
T ss_pred -------C------------------------------CCCHHHHHHHHHHHHHhCCCCcCCCEEEECCCCCCCCCcCch
Confidence 1 123467789999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC--CCCchh
Q psy8076 714 RKSIVDMARNK--PLRVRL 730 (737)
Q Consensus 714 R~~l~~~~~~~--~~~~~~ 730 (737)
|+.|++++.+. ++.+..
T Consensus 631 r~~l~~~~~~~~~~~~~~~ 649 (666)
T PLN02654 631 RRILRKIASRQLDELGDTS 649 (666)
T ss_pred HHHHHHHHcCCCCCCCCcc
Confidence 99999999874 354443
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-88 Score=787.69 Aligned_cols=607 Identities=40% Similarity=0.717 Sum_probs=517.0
Q ss_pred HHHHHHHHHhhChhhHHHHHHhhcccccCccccccCCCCCCCCCCCCCchhHHHHHHhhhhhccCCCceEEEEeCCCCCc
Q psy8076 27 KYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTKS 106 (737)
Q Consensus 27 ~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~ 106 (737)
+|.+++++++++|+.||.++++.+.|.++++++++....+..+||+++.+|+++++|+++++.. |+++|+++.++..+.
T Consensus 2 ~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~-p~~~Al~~~~~~~~~ 80 (628)
T TIGR02316 2 RYEEFYQRSIEQPEAFWAEQARRIDWQTPPQRILDYSNPPFARWFAGGRTNLCHNALDRHLDER-GEQLALVTVSSETGQ 80 (628)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHhCCeecCCcccccCCCCCcCccCCCCEeeHHHHHHHHHhCcC-CCCeEEEEEcCCCCc
Confidence 4889999999999999999999999999999998765667789999999999999999998877 999999986544455
Q ss_pred eeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEE
Q psy8076 107 IRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVII 186 (737)
Q Consensus 107 ~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl 186 (737)
.+++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|
T Consensus 81 ~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li 160 (628)
T TIGR02316 81 ERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIV 160 (628)
T ss_pred eEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHHHhhcCC--CCCccccCCCCeEEEe
Q psy8076 187 AASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLS--HRCVPVEANDPLYILY 264 (737)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~ 264 (737)
+++...+.++.+.+...+..++........++++++.... ...........|.++...... .+.....+++++||+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ily 239 (628)
T TIGR02316 161 SADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLA-PMRLIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILY 239 (628)
T ss_pred ECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCC-CcCcccCccccHHHHhhccccCCCCceecCCCCcEEEEE
Confidence 9988888888888888888877665445677777764311 111112234556665544221 2233357899999999
Q ss_pred cCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccccchhhhhhhccccCcEEEEec
Q psy8076 265 TSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYE 344 (737)
Q Consensus 265 TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~ 344 (737)
|||||| .||||+++|++++......+...++++++|++++.++++|++|+.+.++++|+.|+++++++
T Consensus 240 TSGTTG------------~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~ 307 (628)
T TIGR02316 240 TSGTTG------------KPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYE 307 (628)
T ss_pred CCCCCC------------CCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeC
Confidence 999999 99999999999776666667777899999999999999999998777899999999999998
Q ss_pred CCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccc
Q psy8076 345 GKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLN 424 (737)
Q Consensus 345 ~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~ 424 (737)
+.+. .+++..++++|+++++|+++++|++++.|.+...... ...++++||.+++|||++++++.+++.+.++..+++
T Consensus 308 ~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~ 384 (628)
T TIGR02316 308 GLPT-NPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWL--RKHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVID 384 (628)
T ss_pred CCCC-CCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCccc--ccCCccceeEEEEecCCCCHHHHHHHHHHhCCCEEe
Confidence 7655 5789999999999999999999999999987643211 345789999999999999999999999999999999
Q ss_pred cccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccce
Q psy8076 425 HWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVE 504 (737)
Q Consensus 425 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (737)
.||+||++..++....+......+. +++|+|++|++ ++
T Consensus 385 ~yG~TE~~~~~~~~~~~~~~~~~~~-gs~G~p~~g~~-----v~------------------------------------ 422 (628)
T TIGR02316 385 NYWQTETGWPVLAIMPGLDLKPVKL-GSPGLPMYGYH-----LR------------------------------------ 422 (628)
T ss_pred cccccccCceeecCCCCCCcCCCCC-CCcccCcCCce-----EE------------------------------------
Confidence 9999999855443222111122333 67788888877 77
Q ss_pred EEEEcC-CCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCC-CCeeecCceEEEecCceEEEEeecCCeEee
Q psy8076 505 VRIIRN-DGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKF-PGYYDTMDAGYYDENGYIYVTARDDDVINV 582 (737)
Q Consensus 505 ~~Ivd~-~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~-~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~ 582 (737)
|+|+ +|++++.|+.|||+|+||+|++.+.|||++++++.+.|+..+ ++||+|||+|++|+||+++|+||.||+||+
T Consensus 423 --i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~ 500 (628)
T TIGR02316 423 --VLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINV 500 (628)
T ss_pred --EEECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEe
Confidence 9997 799999999999999999888899999999999988886543 459999999999999999999999999999
Q ss_pred CcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCC
Q psy8076 583 AGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPY 662 (737)
Q Consensus 583 ~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (737)
+|+||+|.|||++|.+||+|.||+|++++++..++.+++||+++++.... .
T Consensus 501 ~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~--------~--------------------- 551 (628)
T TIGR02316 501 AGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAG--------D--------------------- 551 (628)
T ss_pred CCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcccc--------c---------------------
Confidence 99999999999999999999999999999998999999999987641000 0
Q ss_pred CCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHHHcCCCCCchhh
Q psy8076 663 GPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKPLRVRLV 731 (737)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~~~~~~~~~ 731 (737)
......+.++|+++++++|++|++|+.++++++||+|+|||++|+.|++++.+.+..+...
T Consensus 552 --------~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~~~~~~~~~~ 612 (628)
T TIGR02316 552 --------AHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALAEGRDPGDLTT 612 (628)
T ss_pred --------ccchHHHHHHHHHHHHHhcCCCcCCCEEEEcCCCCCCCchHHHHHHHHHHHcCCCCCCccc
Confidence 0112356789999999999999999999999999999999999999999999887765443
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-88 Score=786.12 Aligned_cols=595 Identities=42% Similarity=0.768 Sum_probs=519.9
Q ss_pred ChhHHHHHHHHHhhChhhHHHHHHhh-cccccCccccccCCCCCCCCCCCCCchhHHHHHHhhhhhccCCCceEEEEeCC
Q psy8076 24 QNDKYYDAYRKSIEAPESFWTDVGNM-ATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDRHVERGMAKKVALIHDSP 102 (737)
Q Consensus 24 ~~~~~~~l~~~~~~~p~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~ 102 (737)
.+.+|..++++++++|+.||.++++. +.|.++|+++++....+..+||+++.+|+++++|+++++++ |+++|+++.++
T Consensus 3 ~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~-p~~~Al~~~~~ 81 (625)
T TIGR02188 3 NLEQYKELYEESIEDPDKFWAKLARELLDWFKPFTKVLDWSFPPFYKWFVGGELNVSYNCVDRHLEAR-PDKVAIIWEGD 81 (625)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHhcCceecCCceeecCCCCCCCeeCCCCEEEHHHHHHHHhhccC-CCCeEEEEEcC
Confidence 36789999999999999999999988 99999999998766667889999999999999999999887 99999998764
Q ss_pred CCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCC
Q psy8076 103 VTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKP 182 (737)
Q Consensus 103 ~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~ 182 (737)
..+..+.+||+||+++++++|+.|+++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++++++
T Consensus 82 ~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~ 161 (625)
T TIGR02188 82 EPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGA 161 (625)
T ss_pred CCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCC
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHHHhhcCC-CCCccccCCCCeE
Q psy8076 183 KVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLS-HRCVPVEANDPLY 261 (737)
Q Consensus 183 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~ 261 (737)
+++|+++...+.++.+.+...+.+++...+..+++++++..... ...+.......|.++...... .......++++++
T Consensus 162 ~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 240 (625)
T TIGR02188 162 KLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGN-PVPWVEGRDVWWHDLMAKASAYCEPEPMDSEDPLF 240 (625)
T ss_pred CEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCC-CcCccccccccHHHHHhhcCCCCCceecCCCCceE
Confidence 99999998888888888888888887766534666776654311 111222334566666554332 2334567899999
Q ss_pred EEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccccchhhhhhhccccCcEEE
Q psy8076 262 ILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSV 341 (737)
Q Consensus 262 i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~v 341 (737)
|+||||||| .||||+++|++++......+...++++++|++++.++++|++++.+.++.+|..|++++
T Consensus 241 il~TSGTTG------------~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~v 308 (625)
T TIGR02188 241 ILYTSGSTG------------KPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTV 308 (625)
T ss_pred EEecCCCCC------------CCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEE
Confidence 999999999 99999999999877766666777899999999999999999998777899999999999
Q ss_pred EecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcC--
Q psy8076 342 MYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFN-- 419 (737)
Q Consensus 342 l~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~-- 419 (737)
++++.+. .+++..+++.|+++++|+++++|++++.|.+...... ...++++||.+++||+++++++++++.+.++
T Consensus 309 l~~~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~ 385 (625)
T TIGR02188 309 MFEGTPT-YPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWV--KKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKE 385 (625)
T ss_pred EECCCCC-CCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCccc--ccCCccceeEEEEecCCCCHHHHHHHHHHcCCC
Confidence 9987655 5789999999999999999999999999988654322 3457899999999999999999999999886
Q ss_pred -CcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCc
Q psy8076 420 -VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNAT 498 (737)
Q Consensus 420 -~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (737)
+++++.||+||+++.++.... .....++ +++|+|++|++ ++
T Consensus 386 ~~~i~~~yG~TE~~~~~~~~~~--~~~~~~~-~~~G~p~~g~~-----~~------------------------------ 427 (625)
T TIGR02188 386 RCPIVDTWWQTETGGIMITPLP--GATPTKP-GSATLPFFGIE-----PA------------------------------ 427 (625)
T ss_pred CCceEecccccccCCceeecCC--CCCCcCC-CcccCCcCCce-----EE------------------------------
Confidence 689999999999876554322 1223445 77888888888 77
Q ss_pred ccccceEEEEcCCCCccC-CCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecC
Q psy8076 499 HFTSVEVRIIRNDGSECE-PHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDD 577 (737)
Q Consensus 499 ~~~~~~~~Ivd~~g~~~~-~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~d 577 (737)
|+|++|++++ +|+.|||+|+||+| +++.|||++++++.+.|+...+|||+|||+|++|+||+++|+||+|
T Consensus 428 --------i~d~~g~~~~~~g~~GeL~v~~p~p-~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~d 498 (625)
T TIGR02188 428 --------VVDEEGNPVEGPGEGGYLVIKQPWP-GMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVD 498 (625)
T ss_pred --------EECCCCCCCCCCCCeEEEEEccCCC-cccccccCChHHHHHHHhccCCCEEECCceEEEcCCCcEEEEeccc
Confidence 9999999999 99999999999876 9999999999999999988778999999999999999999999999
Q ss_pred CeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCcccc
Q psy8076 578 DVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRV 657 (737)
Q Consensus 578 d~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (737)
|+||++|+||+|.|||++|.+||.|.+++|++++++..|+.+++||+++++ .
T Consensus 499 d~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~------------~---------------- 550 (625)
T TIGR02188 499 DVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDG------------Y---------------- 550 (625)
T ss_pred CEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCC------------C----------------
Confidence 999999999999999999999999999999999999889999999999876 1
Q ss_pred ccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHHHcCC
Q psy8076 658 LIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNK 724 (737)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~~ 724 (737)
.....+.++|+++++++|+.+++|+.|+++++||+|+|||++|+.|++++.++
T Consensus 551 --------------~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~~~ 603 (625)
T TIGR02188 551 --------------EPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGE 603 (625)
T ss_pred --------------CCCHHHHHHHHHHHHhhcCCCccCcEEEECCCCCCCCCccchHHHHHHHHcCC
Confidence 12245678999999999999999999999999999999999999999999876
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-88 Score=781.89 Aligned_cols=603 Identities=31% Similarity=0.575 Sum_probs=502.8
Q ss_pred hhHHHHHHHHHhhChhhHHHHHHhh-cccccCccccccCCCCCCCCCCCCCchhHHHHHHhhhhhc--cCCCceEEEEeC
Q psy8076 25 NDKYYDAYRKSIEAPESFWTDVGNM-ATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDRHVER--GMAKKVALIHDS 101 (737)
Q Consensus 25 ~~~~~~l~~~~~~~p~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~l~~~~~~--~~pd~~Al~~~~ 101 (737)
+.+|.+++++++++|+.||+++++. +.|.++++++++. +.+..+||+++.+|+++++|++++.. + |+++|+++.+
T Consensus 7 ~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~-~~~~~~wf~~~~~n~~~~~l~~~~~~~~~-~~~~A~~~~~ 84 (647)
T PTZ00237 7 PFDYENDSNYANSNPESFWDEVAKKYVHWDKMYDKVYSG-DEIYPDWFKGGELNTCYNVLDIHVKNPLK-RDQDALIYEC 84 (647)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHhcCeeeCCcccccCC-CCCchhhCCCCeeeHHHHHHHHhhcccCC-CCceEEEEEc
Confidence 6789999999999999999999999 8999999999875 44458999999999999999999865 5 9999999975
Q ss_pred CCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcC
Q psy8076 102 PVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAK 181 (737)
Q Consensus 102 ~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~ 181 (737)
+..+..+++||+||+++++++|+.|+++|+++||+|+++++|++|+++++|||+++|++++|+++.++.+++.+++++++
T Consensus 85 ~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~ 164 (647)
T PTZ00237 85 PYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETIT 164 (647)
T ss_pred CCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcC
Confidence 44444689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEeccccc-ccc-------cCCCCcccHHHHHhhc-----CC
Q psy8076 182 PKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE-EAE-------LTPGYDILWDDALAQR-----LS 248 (737)
Q Consensus 182 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~-~~~-------~~~~~~~~~~~~~~~~-----~~ 248 (737)
++++|+++.....++.+++...+.++.........+++++...... ... ........|.+++... ..
T Consensus 165 ~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (647)
T PTZ00237 165 PKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSP 244 (647)
T ss_pred CCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccccccccccCCCcccccHHHHHhhhccccCCC
Confidence 9999999877777777778777777766433234566655322100 000 0011235566655421 11
Q ss_pred -CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccccchh
Q psy8076 249 -HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHS 327 (737)
Q Consensus 249 -~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~ 327 (737)
.......++++++|+||||||| .||||+++|++++......+...++...+|++++.++++|++++.
T Consensus 245 ~~~~~~~~~~d~~~IlyTSGTTG------------~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~w~~~~~ 312 (647)
T PTZ00237 245 FYEYVPVESSHPLYILYTSGTTG------------NSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHG 312 (647)
T ss_pred CCCceeeCCCCcEEEEEcCCCCC------------CCCeEEEcCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCceEeeHH
Confidence 2234567899999999999999 999999999986655555455567778899999999999998754
Q ss_pred hhhhhccccCcEEEEecCCCCC-CCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCC-ccccCCCCCCccEEEeecCC
Q psy8076 328 YICYGPLAAGITSVMYEGKPDR-TPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDS-TLGAQYSTDSLRYLFVAGEH 405 (737)
Q Consensus 328 ~~~~~~L~~G~~~vl~~~~~~~-~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~-~~~~~~~l~~Lr~i~~gGe~ 405 (737)
.++.+|+.|++++++++.+.. ...+..+++.|+++++|+++++|++++.|.+..... ......++++||.+++||++
T Consensus 313 -~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~Lr~i~~~G~~ 391 (647)
T PTZ00237 313 -FLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEV 391 (647)
T ss_pred -HHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCcchheEEEecCcc
Confidence 488999999999999874320 112788999999999999999999999998754221 11134578999999999999
Q ss_pred CCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcccccccccc
Q psy8076 406 CDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPE 485 (737)
Q Consensus 406 l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (737)
+++++.+++.+.+|+++++.||+||+++.++.... ....+. +++|+|++|++ ++
T Consensus 392 l~~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~---~~~~~~-~s~G~p~~g~~-----~~----------------- 445 (647)
T PTZ00237 392 IEESIPEYIENKLKIKSSRGYGQTEIGITYLYCYG---HINIPY-NATGVPSIFIK-----PS----------------- 445 (647)
T ss_pred CCHHHHHHHHHhcCCCEEeeechHHhChhhhccCC---CCCCCC-CCCccCcCCce-----EE-----------------
Confidence 99999999999999999999999999865443211 111222 67888888888 77
Q ss_pred ccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEe
Q psy8076 486 SLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYD 565 (737)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~ 565 (737)
|+|++|++++.|+.|||++++|+|++++.|||++++++.+ +|..++|||+|||+|++|
T Consensus 446 ---------------------i~d~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~-~f~~~~g~~~TGDlg~~d 503 (647)
T PTZ00237 446 ---------------------ILSEDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQ-LFSKFPGYYNSGDLGFKD 503 (647)
T ss_pred ---------------------EECCCCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHH-HHhCCCCEEECCcEEEEC
Confidence 9999999999999999999999888999999999999875 566678999999999999
Q ss_pred cCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccC
Q psy8076 566 ENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLE 645 (737)
Q Consensus 566 ~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 645 (737)
+||+++|+||+||+||++|+||+|.|||++|.+||.|.+|+|++++++..++.++|||+++++... ..
T Consensus 504 ~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~---------~~--- 571 (647)
T PTZ00237 504 ENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSN---------QS--- 571 (647)
T ss_pred CCCeEEEEeccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCccc---------cC---
Confidence 999999999999999999999999999999999999999999999999889999999998754000 00
Q ss_pred CCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHHHcCCC
Q psy8076 646 RPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKP 725 (737)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~~~ 725 (737)
.+..++.++|+++++++|+++++|+.|+++++||+|+|||++|+.|++++.+.+
T Consensus 572 --------------------------~~~~~l~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~~ 625 (647)
T PTZ00237 572 --------------------------IDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLNDSN 625 (647)
T ss_pred --------------------------CCHHHHHHHHHHHHHhhcCccccCcEEEEcCCCCCCCCccEeHHHHHHHHcCCC
Confidence 123467789999999999999999999999999999999999999999998876
Q ss_pred CCc
Q psy8076 726 LRV 728 (737)
Q Consensus 726 ~~~ 728 (737)
..+
T Consensus 626 ~~~ 628 (647)
T PTZ00237 626 YQL 628 (647)
T ss_pred CCC
Confidence 544
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-87 Score=774.96 Aligned_cols=609 Identities=40% Similarity=0.718 Sum_probs=519.0
Q ss_pred hhHHHHHHHHHhhChhhHHHHHHhhcccccCccccccCCCCCCCCCCCCCchhHHHHHHhhhhhccCCCceEEEEeCCCC
Q psy8076 25 NDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDRHVERGMAKKVALIHDSPVT 104 (737)
Q Consensus 25 ~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~ 104 (737)
+++|.++++++++||+.||++++..+.|.++++++++....+..+||+++.+|.++++|+++++.. |+++|+++.++..
T Consensus 1 ~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~-p~~~A~~~~~~~~ 79 (629)
T PRK10524 1 MMSYSEFYQRSIDDPEAFWAEQARRIDWQTPFTQVLDYSNPPFARWFVGGRTNLCHNAVDRHLAKR-PEQLALIAVSTET 79 (629)
T ss_pred ChhHHHHHHHHhcCHHHHHHHHHHhCCcccCchhhccCCCCCcCccCCCcEeeHHHHHHHHhhccC-CCCeEEEEEcCCC
Confidence 457999999999999999999999999999999998765667789999999999999999999877 9999999865444
Q ss_pred CceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcE
Q psy8076 105 KSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKV 184 (737)
Q Consensus 105 ~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 184 (737)
+..+.+||+||+++++++|+.|+++|+++||+|+++++|++++++++|||+++|++++|++|.++.+++..+++++++++
T Consensus 80 ~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~ 159 (629)
T PRK10524 80 DEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVL 159 (629)
T ss_pred CceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcE
Confidence 55689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHHHhhcCC--CCCccccCCCCeEE
Q psy8076 185 IIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLS--HRCVPVEANDPLYI 262 (737)
Q Consensus 185 vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i 262 (737)
+|+++...+.++.+.+...+.+++.........++++..... ...........+.++...... .+.....+++++|+
T Consensus 160 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i 238 (629)
T PRK10524 160 IVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLA-PMARVAGRDVDYATLRAQHLGARVPVEWLESNEPSYI 238 (629)
T ss_pred EEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCC-CcCcccCCcccHHHHHhcCCCCCCCceeeCCCCceEE
Confidence 999988888888888888888887766545667777654211 111222234556665443222 22333577999999
Q ss_pred EecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccccchhhhhhhccccCcEEEE
Q psy8076 263 LYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVM 342 (737)
Q Consensus 263 ~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl 342 (737)
+||||||| .||||+++|++++......+...++++++|++++.++++|++++.+.++.+|+.|+++++
T Consensus 239 l~TSGTTG------------~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~ 306 (629)
T PRK10524 239 LYTSGTTG------------KPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIM 306 (629)
T ss_pred EeecCCCC------------CCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEE
Confidence 99999999 999999999998777766667778899999999999999999987888999999999999
Q ss_pred ecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcc
Q psy8076 343 YEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTM 422 (737)
Q Consensus 343 ~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i 422 (737)
+++.+. .+++..++++|+++++|+++++|++++.|.+...... ...++++||.+++|||++++++.+++.+.++.++
T Consensus 307 ~~g~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v 383 (629)
T PRK10524 307 YEGLPT-RPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALL--RKHDLSSLRALFLAGEPLDEPTASWISEALGVPV 383 (629)
T ss_pred ECCCCC-CCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccc--cccChhheeEEEEeCCCCCHHHHHHHHHhcCCCe
Confidence 987665 5789999999999999999999999999887543211 3457899999999999999999999999999999
Q ss_pred cccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCccccc
Q psy8076 423 LNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTS 502 (737)
Q Consensus 423 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (737)
++.||+||++..++...........++ +++|+|++|+. ++
T Consensus 384 ~~~YG~TE~~~~~~~~~~~~~~~~~~~-~~~G~p~~g~~-----~~---------------------------------- 423 (629)
T PRK10524 384 IDNYWQTETGWPILAIARGVEDRPTRL-GSPGVPMYGYN-----VK---------------------------------- 423 (629)
T ss_pred EeccccccccchhhcCCCCcccCcCCC-CCcccCcCCce-----EE----------------------------------
Confidence 999999999854433222111122334 67888888887 77
Q ss_pred ceEEEEcC-CCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCC-CCeeecCceEEEecCceEEEEeecCCeE
Q psy8076 503 VEVRIIRN-DGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKF-PGYYDTMDAGYYDENGYIYVTARDDDVI 580 (737)
Q Consensus 503 ~~~~Ivd~-~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~-~g~~~TGDl~~~~~dG~l~i~GR~dd~I 580 (737)
|+|+ +|++++.|+.|||+|+||+|++++.|||++++++.+.||... +|||+|||+|++|+||+++|+||.||+|
T Consensus 424 ----i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i 499 (629)
T PRK10524 424 ----LLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVI 499 (629)
T ss_pred ----EEeCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeE
Confidence 9998 999999999999999999877899999999999998887644 4799999999999999999999999999
Q ss_pred eeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccC
Q psy8076 581 NVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIK 660 (737)
Q Consensus 581 k~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (737)
|++|+||+|.|||++|.+||+|.+++|++++++..++.+++||+++++.... .
T Consensus 500 ~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~--------~------------------- 552 (629)
T PRK10524 500 NVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLA--------D------------------- 552 (629)
T ss_pred EeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCccc--------c-------------------
Confidence 9999999999999999999999999999999998899999999987651000 0
Q ss_pred CCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHHHcCCCCCchhh
Q psy8076 661 PYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKPLRVRLV 731 (737)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~~~~~~~~~ 731 (737)
......+.++|+++++++|+.+++|..++++++||+|++||++|+.|++++.+.+..+...
T Consensus 553 ----------~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~ 613 (629)
T PRK10524 553 ----------REARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQAIAEGRDPGDLTT 613 (629)
T ss_pred ----------ccchHHHHHHHHHHHHhhcCCCcCCCEEEEcCCCCCCCCcchHHHHHHHHHcCCCCCCccc
Confidence 0123457789999999999999999999999999999999999999999998887666443
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-86 Score=769.66 Aligned_cols=597 Identities=40% Similarity=0.735 Sum_probs=514.4
Q ss_pred ChhHHHHHHHHHhhChhhHHHHHHhhcccccCccccccCCCCCCCCCCCCCchhHHHHHHhhhhhccCCCceEEEEeCCC
Q psy8076 24 QNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDRHVERGMAKKVALIHDSPV 103 (737)
Q Consensus 24 ~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~ 103 (737)
.+.+|..++++++++|+.||.++++.+.|.++|+++++. +.+..+||+++.+|+++++|++++++. |+++|+++.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~n~~~~~l~~~~~~~-p~~~Al~~~~~~ 92 (637)
T PRK00174 15 DMEQYKALYQESVEDPEGFWAEQAKRLDWFKPFDTVLDW-NAPFIKWFEDGELNVSYNCLDRHLKTR-GDKVAIIWEGDD 92 (637)
T ss_pred ChHHHHHHHHHHhcCHHHHHHHHHHhcCeecCCcccccC-CCCCCccCCCCEeEHHHHHHHHhhccC-CCCeEEEEECCC
Confidence 467999999999999999999999999999999999875 567889999999999999999999887 999999987643
Q ss_pred CCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCc
Q psy8076 104 TKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPK 183 (737)
Q Consensus 104 ~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~ 183 (737)
.+..+++||+||+++++++|+.|+++|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++
T Consensus 93 ~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~ 172 (637)
T PRK00174 93 PGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAK 172 (637)
T ss_pred CCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHHHhhcCC-CCCccccCCCCeEE
Q psy8076 184 VIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLS-HRCVPVEANDPLYI 262 (737)
Q Consensus 184 ~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i 262 (737)
++|+++.....++.+.+...+...+..++ ..+.++++.... ....+.......+.++...... .......+++++||
T Consensus 173 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i 250 (637)
T PRK00174 173 LVITADEGVRGGKPIPLKANVDEALANCP-SVEKVIVVRRTG-GDVDWVEGRDLWWHELVAGASDECEPEPMDAEDPLFI 250 (637)
T ss_pred EEEEcCccccCCcccchHHHHHHHHHhCC-CccEEEEEcCCC-CCcCcCCCCcccHHHHHhhcCCCCCccccCCCCcEEE
Confidence 99999887777777777777777776665 566777665431 1111222234556666543322 23345678999999
Q ss_pred EecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccccchhhhhhhccccCcEEEE
Q psy8076 263 LYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVM 342 (737)
Q Consensus 263 ~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl 342 (737)
+||||||| .||||+++|++++.+........++++++|++++.+|++|+.++.+.++.+|..|+++++
T Consensus 251 ~~TSGTTG------------~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~ 318 (637)
T PRK00174 251 LYTSGSTG------------KPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLM 318 (637)
T ss_pred EECCCCCC------------CCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEE
Confidence 99999999 999999999998776666566668899999999999999999987788999999999999
Q ss_pred ecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcC---
Q psy8076 343 YEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFN--- 419 (737)
Q Consensus 343 ~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~--- 419 (737)
+++.+. .+++..+++.|+++++|++.++|++++.|.+...... ...++++||.+++|||++++++.+++.+.++
T Consensus 319 ~~~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~ 395 (637)
T PRK00174 319 FEGVPN-YPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHP--KKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGER 395 (637)
T ss_pred ECCCCC-CCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCccc--ccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCC
Confidence 987554 5789999999999999999999999999987654321 3456889999999999999999999998886
Q ss_pred CcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcc
Q psy8076 420 VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATH 499 (737)
Q Consensus 420 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (737)
+++++.||+||+++.++.... .....++ +++|+|++|+. ++
T Consensus 396 ~~i~~~YG~TE~~~~~~~~~~--~~~~~~~-~~vG~p~~g~~-----~~------------------------------- 436 (637)
T PRK00174 396 CPIVDTWWQTETGGIMITPLP--GATPLKP-GSATRPLPGIQ-----PA------------------------------- 436 (637)
T ss_pred CceEecccccccCCceEecCC--CCCCcCC-CcccCCCCCce-----EE-------------------------------
Confidence 689999999999876544221 1122334 68889988888 77
Q ss_pred cccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCe
Q psy8076 500 FTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDV 579 (737)
Q Consensus 500 ~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~ 579 (737)
|+|++|++++.|+.|||+|+||+| +++.|||++++++.+.++...+|||+|||+|++|+||+++|+||.||+
T Consensus 437 -------i~d~~g~~~~~g~~Gel~v~g~~p-~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ 508 (637)
T PRK00174 437 -------VVDEEGNPLEGGEGGNLVIKDPWP-GMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDV 508 (637)
T ss_pred -------EECCCCCCCCCCCcEEEEEcCCCC-cccccccCCHHHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccE
Confidence 999999999999999999999776 999999999999999988777899999999999999999999999999
Q ss_pred EeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCcccccc
Q psy8076 580 INVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLI 659 (737)
Q Consensus 580 Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (737)
||++|+||+|.|||++|.+||+|.+++|++++++..|+.+++||++.++ .
T Consensus 509 ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~------------~------------------ 558 (637)
T PRK00174 509 LNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGG------------E------------------ 558 (637)
T ss_pred EEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCC------------C------------------
Confidence 9999999999999999999999999999999999889999999998765 1
Q ss_pred CCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHHHcCC-CCCc
Q psy8076 660 KPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNK-PLRV 728 (737)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~~-~~~~ 728 (737)
.....+.++|+++++++|+.+++|..++++++||+|++||++|+.|++++.++ .+.+
T Consensus 559 ------------~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~~~~ 616 (637)
T PRK00174 559 ------------EPSDELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEGEEILGD 616 (637)
T ss_pred ------------CCCHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCCcchHHHHHHHHHcCCCCCCC
Confidence 11245677899999999999999999999999999999999999999998876 3444
|
|
| >KOG1175|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-86 Score=722.31 Aligned_cols=597 Identities=42% Similarity=0.726 Sum_probs=539.2
Q ss_pred CChhHHHHHHHHHhhChhhHHHHHHhhcccccCcc--ccccCCCCCCCCCCCCCchhHHHHHHhhhhhccCCCceEEEEe
Q psy8076 23 NQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWD--RILDNSDQPFTKWFVGGEINACYNAIDRHVERGMAKKVALIHD 100 (737)
Q Consensus 23 ~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~pd~~Al~~~ 100 (737)
..+.+|+.++++++++|+.||.++++.+.|..++. .......++..+||+++.+|.++++++++.+...++.+|++++
T Consensus 8 ~~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~ln~~~n~~~~~~~~~~~~~~a~~~~ 87 (626)
T KOG1175|consen 8 NSLSSYREFYRFSVEDPERFWGEVAKELHWKFPWPRCNKDENKGNPFTKWFPGAFLNACYNCLDRHIKEKGGDKVAIIFE 87 (626)
T ss_pred CCHHHHHHHHhhcccCHHHHHHHhhhhhhcccCccccccccccCCCCccccccchhhhhHhhhhhhhhhcCCCCcEEEEE
Confidence 34779999999999999999999999988777765 2233444678999999999999999999976656999999999
Q ss_pred CCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhc
Q psy8076 101 SPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHA 180 (737)
Q Consensus 101 ~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~ 180 (737)
+...+....+||.||.+++.++|+.|.++|+++||+|++++|+.+|+++++|||+++|++++++...+++..+..+++++
T Consensus 88 ~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~ 167 (626)
T KOG1175|consen 88 GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSAKELLDRLQDS 167 (626)
T ss_pred ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhc
Confidence 77666666699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCcccCCccccchHHHHHHHHhcCCC---CCeEEEEecccccccccCCCCcccHHHHHhhcCC-CCCccccC
Q psy8076 181 KPKVIIAASCGVEPNKVVRYKTILNEALEISSCK---PDYCIIFQRRCVEEAELTPGYDILWDDALAQRLS-HRCVPVEA 256 (737)
Q Consensus 181 ~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 256 (737)
++|++++.+...+.++.+.++..+.+++..++.. ....+++... ..++.|.+......+ ..+.+.+.
T Consensus 168 ~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------~~d~~~~~~~~~a~~~~~~~~~~~ 238 (626)
T KOG1175|consen 168 KAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRR---------NRDLFWSLELKKASPEHPCVPVKA 238 (626)
T ss_pred CCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecc---------cccccHHHHhhhcCCCCCceecCc
Confidence 9999999999999999999999999988877632 1222222221 126778877665554 56888999
Q ss_pred CCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccccchhhhhhhcccc
Q psy8076 257 NDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAA 336 (737)
Q Consensus 257 ~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~ 336 (737)
+|+.+|+||||||| .|||+++++.+++..........++++++|+++++++.+|++++.+.++++|+.
T Consensus 239 edpl~IlfTSGtTg------------~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~ 306 (626)
T KOG1175|consen 239 EDPLFILFTSGTTG------------KPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLN 306 (626)
T ss_pred cCceEEEecCCCCC------------CCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhc
Confidence 99999999999999 999999999999999999999999999999999999999999999989999999
Q ss_pred CcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHH
Q psy8076 337 GITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEK 416 (737)
Q Consensus 337 G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~ 416 (737)
|++++++++.|. ++.++++.+.++++|++++.|++++.|.+...... ..+++++||.+.++||++.++.+.|+.+
T Consensus 307 Ga~~vl~~g~p~---~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~--~~~~~~sLk~~~S~Gepi~~~~~ew~~~ 381 (626)
T KOG1175|consen 307 GATVVLYEGPPF---DPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDV--TSYSLKSLRTCGSVGEPINPEAWEWWKR 381 (626)
T ss_pred CcEEEEEcCCCC---ChhhhhhhHhhcceEEEEeccHHHHHHHHhccccc--cccccceEEEEeecCccCCcchHHHHHH
Confidence 999999998764 99999999999999999999999999988766543 4555578999999999999999999999
Q ss_pred hcCC-cccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCC
Q psy8076 417 SFNV-TMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQ 495 (737)
Q Consensus 417 ~~~~-~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (737)
.++. +|++.||+||+|+.++....+.. +.++ ++.+.|.+|++ +.
T Consensus 382 ~~~~~pv~e~~~qtEtG~~~i~~~~g~~--p~~p-g~~~~p~~g~~-----v~--------------------------- 426 (626)
T KOG1175|consen 382 VTGLDPIYETYGQTETGGICITPKPGKL--PIKP-GSAGKPFPGYD-----VQ--------------------------- 426 (626)
T ss_pred hcCccchhhceeeeccCceeeeccCCCC--CcCc-cccCCCCCCcc-----eE---------------------------
Confidence 9987 69999999999998887665332 6777 89999999999 88
Q ss_pred CCcccccceEEEEcCCCCccCCC-cceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEe
Q psy8076 496 NATHFTSVEVRIIRNDGSECEPH-ELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTA 574 (737)
Q Consensus 496 ~~~~~~~~~~~Ivd~~g~~~~~g-~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~G 574 (737)
|+|++|.+++.+ +.|||+++.|+|++++++||+|++++...||.+++|+|+|||.|++|+||+++++|
T Consensus 427 -----------i~de~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~G 495 (626)
T KOG1175|consen 427 -----------ILDENGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYYWILG 495 (626)
T ss_pred -----------EECCCCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEEcCCceEEEEe
Confidence 999999999887 89999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCc
Q psy8076 575 RDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNP 654 (737)
Q Consensus 575 R~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (737)
|.||+||++|+|+++.|||++|.+||.|.|++||+.+++..||.++|||+++++ .
T Consensus 496 R~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g------------~------------- 550 (626)
T KOG1175|consen 496 RVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSG------------S------------- 550 (626)
T ss_pred cccccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCC------------C-------------
Confidence 999999999999999999999999999999999999999999999999999987 2
Q ss_pred cccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHHHcCCCCCchhhhh
Q psy8076 655 IRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKPLRVRLVYL 733 (737)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~~~~~~~~~~~ 733 (737)
...+++.++|++++++.+++++.|+.|++++.||+|+|||++|++||+.+.++.+++.....
T Consensus 551 -----------------~~~~~L~kel~~~VR~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g~~~~d~st~~ 612 (626)
T KOG1175|consen 551 -----------------HDPEQLTKELVKHVRSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASGKAVGDTSTLA 612 (626)
T ss_pred -----------------CChHHHHHHHHHHHHhhcCcccccceeEecCCCCccccchhHHHHHHHHhccCccccccccC
Confidence 45688999999999999999999999999999999999999999999999999887765543
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-84 Score=755.08 Aligned_cols=595 Identities=22% Similarity=0.328 Sum_probs=499.6
Q ss_pred ccCChhHHHHHHHHHhhChhhHHHHHHhh--cccccCccccccCCCCCCCCCCCCCchhHHHHHHhhhhhccCCCceEEE
Q psy8076 21 TSNQNDKYYDAYRKSIEAPESFWTDVGNM--ATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDRHVERGMAKKVALI 98 (737)
Q Consensus 21 ~~~~~~~~~~l~~~~~~~p~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~pd~~Al~ 98 (737)
....+.+|.++++++++||+.||.++++. +.|.++|+++++....+..+||+++.+|++.+++++ . ++++|++
T Consensus 30 ~~~~~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~~~~----~-~~~~a~~ 104 (652)
T TIGR01217 30 HGAAEGGYDALHRWSVDELDTFWKAVWEWFDVRFSTPCARVVDDRTMPGAQWFPGARLNYAENLLRA----A-GTEPALL 104 (652)
T ss_pred hCCChhhHHHHHHHHHhCHHHHHHHHHHhCCcceeCCCceeeeCCCCCCCEECCCCeeeHHHHHhcc----C-CCCeEEE
Confidence 44456789999999999999999999998 899999999997666677899999999999999974 3 7899999
Q ss_pred EeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHh
Q psy8076 99 HDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLE 178 (737)
Q Consensus 99 ~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~ 178 (737)
+.++ .+..+++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|++++|+++.++++++.++++
T Consensus 105 ~~~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~ 183 (652)
T TIGR01217 105 YVDE-THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQ 183 (652)
T ss_pred EECC-CCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHH
Confidence 9763 345689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccc-cccCCCCcccHHHHHhhcC--CCCCcccc
Q psy8076 179 HAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEE-AELTPGYDILWDDALAQRL--SHRCVPVE 255 (737)
Q Consensus 179 ~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 255 (737)
+++++++|+++.....++.+.+...+.++...++ .++.++++....... ..........|+++..... ........
T Consensus 184 ~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (652)
T TIGR01217 184 QIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELP-TLRAVVHIPYLGPRETEAPKIDGALDLEDFTAAAQAAELVFEQLP 262 (652)
T ss_pred hcCCcEEEEccccccCCcccchHHHHHHHHhcCC-CccEEEEEeCCCCcccccccccCcccHHHHHhcccCCCCCceecC
Confidence 9999999999988888888888888888877666 667777765321100 0000113456777654421 12334567
Q ss_pred CCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccccchhhhhhhccc
Q psy8076 256 ANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLA 335 (737)
Q Consensus 256 ~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~ 335 (737)
++++++|+||||||| .||||+++|++++......+...++++++|+++++++++|+++ .+ ++.+|+
T Consensus 263 ~~d~~~ilyTSGTTG------------~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~-~~~~l~ 328 (652)
T TIGR01217 263 FDHPLWILFSSGTTG------------LPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMW-NW-LVSGLA 328 (652)
T ss_pred CCCCEEEEEcCCCCC------------CCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhh-HH-HHHHHh
Confidence 799999999999999 9999999999977666555666789999999999999999864 33 568999
Q ss_pred cCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHH
Q psy8076 336 AGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAE 415 (737)
Q Consensus 336 ~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~ 415 (737)
.|++++++++.+. .+++..++++++++++|++.++|++++.+....... ....++++||.+++|||++++++.+++.
T Consensus 329 ~G~t~vl~~g~~~-~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~--~~~~~l~sLr~i~~gGe~l~~~~~~~~~ 405 (652)
T TIGR01217 329 TGATLVLYDGSPG-FPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHP--ARTHDLSALQCVASTGSPLPPDGFRWVY 405 (652)
T ss_pred cCcEEEEECCCCC-CCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCc--cccCChhheeEEEeecCCCCHHHHHHHH
Confidence 9999999987654 468999999999999999999999988887643221 1456789999999999999999999999
Q ss_pred HhcCC--cccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCC
Q psy8076 416 KSFNV--TMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPK 493 (737)
Q Consensus 416 ~~~~~--~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (737)
+.++. .+.+.||+||+++...... ...+..+ +++|.|.+|++ ++
T Consensus 406 ~~~~~~~~~~~~yG~TE~~~~~~~~~---~~~~~~~-g~~g~p~~g~~-----v~------------------------- 451 (652)
T TIGR01217 406 DEIKADVWLASISGGTDICSCFAGAN---PTLPVHI-GEIQAPGLGTA-----VQ------------------------- 451 (652)
T ss_pred HHhCCCceEEeccCHHHHhccccCCC---CCCCCcC-CccCCCcCCCc-----eE-------------------------
Confidence 88864 5678999999754332211 1112223 56777777777 66
Q ss_pred CCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChh--hhHHhhccCCCCeeecCceEEEecCceEE
Q psy8076 494 GQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQ--RFMKIYFTKFPGYYDTMDAGYYDENGYIY 571 (737)
Q Consensus 494 ~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~--~~~~~~~~~~~g~~~TGDl~~~~~dG~l~ 571 (737)
|+|++|+++ .|+.|||+|+||+| +++.|||++++ ++.+.||.+++|||+|||+|++|+||+|+
T Consensus 452 -------------ivd~~g~~~-~g~~GEl~v~gp~p-~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~ 516 (652)
T TIGR01217 452 -------------SWDPEGKPV-TGEVGELVCTNPMP-SMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIV 516 (652)
T ss_pred -------------EECCCCCCC-CCCccEEEEecCCC-ccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEE
Confidence 999999999 59999999999986 89999999997 44467777778999999999999999999
Q ss_pred EEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccC
Q psy8076 572 VTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLL 651 (737)
Q Consensus 572 i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (737)
|+||+||+||++|+||+|.|||++|.+||.|.+|+|++++++..++.++|||+++++ .
T Consensus 517 i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~------------~---------- 574 (652)
T TIGR01217 517 IHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPG------------A---------- 574 (652)
T ss_pred EEecccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCC------------C----------
Confidence 999999999999999999999999999999999999999999899999999998765 1
Q ss_pred CCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHHHcCCCCCchh
Q psy8076 652 TNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKPLRVRL 730 (737)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~~~~~~~~ 730 (737)
...+++.++|+++++++|++|++|+.++++++||+|+|||++|+.|++++.++++.+..
T Consensus 575 --------------------~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~r~~Lr~~~~~~~~~~~~ 633 (652)
T TIGR01217 575 --------------------TLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKRVEVAVKRVLQGTPVDNPG 633 (652)
T ss_pred --------------------CCCHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccChHHHHHHHHcCCCCCCcc
Confidence 12245678999999999999999999999999999999999999999999888765543
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-84 Score=755.30 Aligned_cols=593 Identities=25% Similarity=0.377 Sum_probs=502.8
Q ss_pred ccCChhHHHHHHHHHhhChhhHHHHHHhh--cccccCccccccCCCCCCCCCCCCCchhHHHHHHhhhhhccCCCceEEE
Q psy8076 21 TSNQNDKYYDAYRKSIEAPESFWTDVGNM--ATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDRHVERGMAKKVALI 98 (737)
Q Consensus 21 ~~~~~~~~~~l~~~~~~~p~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~pd~~Al~ 98 (737)
....+.+|.+++++++++|+.||.++++. +.|.++++++++....+..+||+++.+|++++++++ .. |+++|++
T Consensus 29 ~~~~~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~~~~---~~-~~~~Al~ 104 (655)
T PRK03584 29 RGLSFDDYAALWRWSVEDLEAFWQSVWDFFGVIGSTPYTVVLAGRRMPGARWFPGARLNYAENLLRH---RR-DDRPAII 104 (655)
T ss_pred hCCChHhHHHHHHHHHhCHHHHHHHHHHhcCceecCCCcEeecCCCCCCCeeCCCCEeeHHHHhhcc---CC-CCCeEEE
Confidence 34456789999999999999999999987 889999999987655667899999999999999974 34 9999999
Q ss_pred EeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHh
Q psy8076 99 HDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLE 178 (737)
Q Consensus 99 ~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~ 178 (737)
+.++ .+..+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++
T Consensus 105 ~~~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~ 183 (655)
T PRK03584 105 FRGE-DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFG 183 (655)
T ss_pred EECC-CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHH
Confidence 9763 345689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHHHhhcC--CCCCccccC
Q psy8076 179 HAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRL--SHRCVPVEA 256 (737)
Q Consensus 179 ~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 256 (737)
+++++++|+++.....++.+.....+.++...++ .+++++++.................|.++..... ........+
T Consensus 184 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (655)
T PRK03584 184 QIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALP-SLEHVVVVPYLGPAAAAAALPGALLWEDFLAPAEAAELEFEPVPF 262 (655)
T ss_pred HcCCcEEEEccccccCCcccchHHHHHHHHhcCC-CccEEEEEecCCCcccccccCCcccHHHHhhccccCCCCceecCC
Confidence 9999999999988777777777788877776665 5667776654311111112223456776655221 223345678
Q ss_pred CCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccccchhhhhhhcccc
Q psy8076 257 NDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAA 336 (737)
Q Consensus 257 ~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~ 336 (737)
+++++|+||||||| .||||+++|++++.+....+...+++.++|+++++++++|+++. + ++++|+.
T Consensus 263 ~~~a~ilyTSGTTG------------~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~-~~~~L~~ 328 (655)
T PRK03584 263 DHPLWILYSSGTTG------------LPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMWN-W-LVSGLLV 328 (655)
T ss_pred CCcEEEEecCCCCC------------CCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhHH-H-HHHHHHc
Confidence 99999999999999 99999999999877666556677899999999999999998653 3 6789999
Q ss_pred CcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHH
Q psy8076 337 GITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEK 416 (737)
Q Consensus 337 G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~ 416 (737)
|++++++++.+. .+++..++++++++++|++.++|++++.|.+...... ...++++||.+++|||++++++.+++.+
T Consensus 329 G~t~vl~~~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--~~~~l~sLr~i~~~Ge~l~~~~~~~~~~ 405 (655)
T PRK03584 329 GATLVLYDGSPF-YPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPG--ETHDLSALRTIGSTGSPLPPEGFDWVYE 405 (655)
T ss_pred CCEEEEeCCCCC-CCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCcc--ccCChhheEEEEEecCCCCHHHHHHHHH
Confidence 999999987665 5789999999999999999999999999987532211 3457899999999999999999999999
Q ss_pred hcC--CcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCC
Q psy8076 417 SFN--VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKG 494 (737)
Q Consensus 417 ~~~--~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (737)
.++ ..+++.||+||+++.+.... ...+..+ +++|.|++|++ ++
T Consensus 406 ~~~~~~~~~~~yG~TE~~~~~~~~~---~~~~~~~-g~~g~p~~g~~-----~~-------------------------- 450 (655)
T PRK03584 406 HVKADVWLASISGGTDICSCFVGGN---PLLPVYR-GEIQCRGLGMA-----VE-------------------------- 450 (655)
T ss_pred HhCCCceEEeccChHhhhcccccCC---CCCCcCC-CccCCCcCCce-----eE--------------------------
Confidence 884 67999999999865433211 1223334 67788888877 76
Q ss_pred CCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChh--hhHHhhccCCCCeeecCceEEEecCceEEE
Q psy8076 495 QNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQ--RFMKIYFTKFPGYYDTMDAGYYDENGYIYV 572 (737)
Q Consensus 495 ~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~--~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i 572 (737)
|+|++|+++ .|+.|||+|+||+| +++.|||++++ ++.+.||..++|||+|||+|++|+||+++|
T Consensus 451 ------------ivd~~g~~~-~g~~GeL~v~gp~p-~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i 516 (655)
T PRK03584 451 ------------AWDEDGRPV-VGEVGELVCTKPFP-SMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVI 516 (655)
T ss_pred ------------EECCCCCCC-CCCceEEEEccCCC-CCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCCCeEEE
Confidence 999999999 79999999999876 89999999986 445667777789999999999999999999
Q ss_pred EeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCC
Q psy8076 573 TARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLT 652 (737)
Q Consensus 573 ~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (737)
+||.||+||++|+||+|.|||++|.+||.|.+|+|++++++..++.+++||+++++ .
T Consensus 517 ~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~------------~----------- 573 (655)
T PRK03584 517 YGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEG------------V----------- 573 (655)
T ss_pred EeeccCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCC------------C-----------
Confidence 99999999999999999999999999999999999999998889999999999865 1
Q ss_pred CccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHHHcCCCCC
Q psy8076 653 NPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKPLR 727 (737)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~~~~~ 727 (737)
...+.+.++|+++++++|+++++|..++++++||+|+|||++|+.|++++.+++..
T Consensus 574 -------------------~~~~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~sGKi~r~~lr~~~~~~~~~ 629 (655)
T PRK03584 574 -------------------TLDDALRARIRTTIRTNLSPRHVPDKIIAVPDIPRTLSGKKVELPVKKLLHGRPVK 629 (655)
T ss_pred -------------------CCcHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccchHHHHHHHHcCCCCC
Confidence 12345678999999999999999999999999999999999999999999988876
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-82 Score=735.48 Aligned_cols=583 Identities=24% Similarity=0.346 Sum_probs=478.9
Q ss_pred cCChhHHHHHHHHHhhChhhHHHHHHhh--cccccCccccccC--CCCCCCCCCCCCchhHHHHHHhhhhhccCCCceEE
Q psy8076 22 SNQNDKYYDAYRKSIEAPESFWTDVGNM--ATWSKKWDRILDN--SDQPFTKWFVGGEINACYNAIDRHVERGMAKKVAL 97 (737)
Q Consensus 22 ~~~~~~~~~l~~~~~~~p~~~~~~~~~~--~~~~~~~~~~l~~--~~~~~~~~~~~~~~n~~~~~l~~~~~~~~pd~~Al 97 (737)
...+.+|..+++++++||+.||.++++. +.|.++++++++. ...+..+||+++.+|.++++|++++++. |+++|+
T Consensus 116 ~~~~~~y~~~~~~sv~~~~~fw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~wf~g~~ln~~~~~l~~~~~~~-pd~~Ai 194 (728)
T PLN03052 116 KDPISSFSEFQRFSVENPEVYWSIVLDELSLVFSVPPRCILDTSDESNPGGQWLPGAVLNVAECCLTPKPSKT-DDSIAI 194 (728)
T ss_pred CCChhhHHHHHHHHhhCHHHHHHHHHHhcCCCccCCCceeecCCCCCCCCCEECCCCEeEHHHHHHHHHhccC-CCCeEE
Confidence 3446789999999999999999999997 5899999999975 3456789999999999999999987766 999999
Q ss_pred EEeCCC--CCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHH
Q psy8076 98 IHDSPV--TKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCA 175 (737)
Q Consensus 98 ~~~~~~--~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~ 175 (737)
++.++. .+..+++||+||+++++++|++|+++|+++||+|+++++|++|+++++|||+++|++++|++|.++++++.+
T Consensus 195 ~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~ 274 (728)
T PLN03052 195 IWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIAT 274 (728)
T ss_pred EEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHH
Confidence 998642 224579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHHHhhcC----C--C
Q psy8076 176 RLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRL----S--H 249 (737)
Q Consensus 176 ~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~ 249 (737)
++++++++++|+++...+.++.++....+.+... .+++++.................|.++..... . .
T Consensus 275 rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~------~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (728)
T PLN03052 275 RLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA------PKAIVLPADGKSVRVKLREGDMSWDDFLARANGLRRPDEY 348 (728)
T ss_pred HHHhcCceEEEEcCccccCCcccchHHHHHHhcC------CcEEEEeCCCCccccccccCCccHHHHHhccccccccccc
Confidence 9999999999999987777777766555544321 34555543211100011113456777654321 1 1
Q ss_pred CCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccccchhhh
Q psy8076 250 RCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYI 329 (737)
Q Consensus 250 ~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~ 329 (737)
......+++++||+||||||| +||||+++|++++..... ....++++++|+++++++++|+++. +.
T Consensus 349 ~~~~~~~d~~a~IlyTSGTTG------------~PKgVv~sh~~~l~~~~~-~~~~~~l~~~d~~~~~~~l~w~~g~-~~ 414 (728)
T PLN03052 349 KAVEQPVEAFTNILFSSGTTG------------EPKAIPWTQLTPLRAAAD-AWAHLDIRKGDIVCWPTNLGWMMGP-WL 414 (728)
T ss_pred cccccCCCCcEEEEecCCCCC------------CCceEEECchHHHHHHHH-HHHhcCCCCCcEEEECCCcHHHhHH-HH
Confidence 122236699999999999999 999999999886555444 3344789999999999999999996 56
Q ss_pred hhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHH
Q psy8076 330 CYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHE 409 (737)
Q Consensus 330 ~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~ 409 (737)
++++|+.|++++++++. +++..++++++++++|++.++|++++.|.+.... ...++++||.+++|||+++++
T Consensus 415 v~~~L~~Gat~vl~~g~----p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~----~~~dlssLr~i~s~Ge~l~~~ 486 (728)
T PLN03052 415 VYASLLNGATLALYNGS----PLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCM----AGLDWSSIRCFGSTGEASSVD 486 (728)
T ss_pred HHHHHHhCCEEEEeCCC----CCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCc----ccCChhheeEEEecCCCCCHH
Confidence 88999999999999874 3456799999999999999999999999876432 456889999999999999999
Q ss_pred HHHHHHHhcC-CcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccc
Q psy8076 410 TKNWAEKSFN-VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLR 488 (737)
Q Consensus 410 ~~~~~~~~~~-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (737)
...|+.+.++ .+++|.||+||+++.++.... ..+..+ +++|.|++|++ ++
T Consensus 487 ~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~---~~~~~~-g~~g~p~~g~~-----v~-------------------- 537 (728)
T PLN03052 487 DYLWLMSRAGYKPIIEYCGGTELGGGFVTGSL---LQPQAF-AAFSTPAMGCK-----LF-------------------- 537 (728)
T ss_pred HHHHHHHhcCCCCeEeeccChhhCcccccCCC---CCCCCC-CccccCCCCce-----EE--------------------
Confidence 9999888776 578999999999865443221 122334 67888888887 77
Q ss_pred cCCCCCCCCcccccceEEEEcCCCCccCCCc--ceEEEEecCCCCCcccccccChhhhHHhhccCCC---C--eeecCce
Q psy8076 489 KNVPKGQNATHFTSVEVRIIRNDGSECEPHE--LGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFP---G--YYDTMDA 561 (737)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~--~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~---g--~~~TGDl 561 (737)
|+|++|++++.|+ .|||+++++++ +...+|+++.. .+.||..++ | ||+|||+
T Consensus 538 ------------------v~d~~g~~v~~g~~~~GEL~v~~~~~-~~~~~~~~~~~--~~~yf~~~p~~~g~~~~~tGDl 596 (728)
T PLN03052 538 ------------------ILDDSGNPYPDDAPCTGELALFPLMF-GASSTLLNADH--YKVYFKGMPVFNGKILRRHGDI 596 (728)
T ss_pred ------------------EECCCCCCCCCCCCceEEEEEeCCCC-CCCccccCchh--hhhhhhcCCCCCCCEEEecCce
Confidence 9999999999985 59999987654 56678888742 355664322 4 9999999
Q ss_pred EEEecCceEEEEeecCCeEeeCcEEechHHHHHHHh-cCCCcceeEEecccCCCCC-cceEEEEEee--cCCCCcCCccc
Q psy8076 562 GYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVL-SHPDVGDTAVIGVPEPTKG-EIPFCLYIKK--RIPLDKMGFSG 637 (737)
Q Consensus 562 ~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~v~~~--~~~~~~~~~~~ 637 (737)
+++|+||+++|+||+||+||++|+||++.|||++|. .||.|.|++|++++++..| +.+++||+++ ++
T Consensus 597 ~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g--------- 667 (728)
T PLN03052 597 FERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPG--------- 667 (728)
T ss_pred EEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCC---------
Confidence 999999999999999999999999999999999995 7999999999999998665 8899999987 33
Q ss_pred cccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHH
Q psy8076 638 LIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSI 717 (737)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l 717 (737)
.. .+.+++.+.|++.++++|+++++|..|+++++||+|+|||++|+.|
T Consensus 668 ---~~-----------------------------~~~~~L~~~i~~~i~~~l~~~~~p~~i~~v~~lP~T~sGKi~Rr~L 715 (728)
T PLN03052 668 ---SN-----------------------------PDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVL 715 (728)
T ss_pred ---CC-----------------------------CCHHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCchHHHHHHH
Confidence 10 2236788899999999999999999999999999999999999999
Q ss_pred HHHHcCC
Q psy8076 718 VDMARNK 724 (737)
Q Consensus 718 ~~~~~~~ 724 (737)
++++.+.
T Consensus 716 r~~~~~~ 722 (728)
T PLN03052 716 RQQLAQE 722 (728)
T ss_pred HHHHHhh
Confidence 9988654
|
|
| >KOG1176|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-76 Score=650.17 Aligned_cols=499 Identities=27% Similarity=0.413 Sum_probs=420.6
Q ss_pred CCc-eEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCC
Q psy8076 92 AKK-VALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIG--VSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGF 168 (737)
Q Consensus 92 pd~-~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~G--v~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~ 168 (737)
+++ +++++.... .+.+||+|++.++.++|..|.++| +++||+|++++||+++++.++|||+.+|+++.|++|.+
T Consensus 30 ~~~~~~~i~~~~~---g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~ 106 (537)
T KOG1176|consen 30 LDRNTSLVYQDSD---GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRL 106 (537)
T ss_pred ccCcceEEEecCC---CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCccc
Confidence 444 778776521 489999999999999999999876 88999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCccc-HHHHHhhcC
Q psy8076 169 AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL-WDDALAQRL 247 (737)
Q Consensus 169 ~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 247 (737)
.+.++...+++++++++|++... ...+.++...+. .+++++................. +.++.....
T Consensus 107 ~~~ei~~~~~~s~~kiif~d~~~---------~~~i~~~~~~~~---~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T KOG1176|consen 107 TASEIAKQLKDSKPKLIFVDEDF---------YDKISEATSKLA---LKIIVLTGDEGVISISDLVEDLDAFEDLMPEGL 174 (537)
T ss_pred CHHHHHHHHHhcCCeEEEEcCch---------HHHHHHHHhhcC---CceEEEecccCccccccccccccchhhccccCC
Confidence 99999999999999999999863 445555554443 44555543211111101111111 333333332
Q ss_pred CCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccccchh
Q psy8076 248 SHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHS 327 (737)
Q Consensus 248 ~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~ 327 (737)
+....+...+|++.++||||||| .||||+++|++++.+.... .....+...|+.++.+|++|.+|+.
T Consensus 175 ~~~~~~~~~dd~~~il~SSGTTg------------~PKgV~lsHr~~~~~~~~~-~~~~~~~~~~v~l~~lPl~H~~Gl~ 241 (537)
T KOG1176|consen 175 PDGIRPVSEDDTAAILYSSGTTG------------LPKGVVLSHRNLIANTLSI-KIGWELTSDDVYLCTLPLFHIYGLI 241 (537)
T ss_pred CcccccCCCCCeEEEecCCCCCC------------CCceEEEecHHHHHHHHHh-hhcccCCCCceEEEechHHHHhHHH
Confidence 22245567799999999999999 9999999999977776643 3335667799999999999999987
Q ss_pred hhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCC
Q psy8076 328 YICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCD 407 (737)
Q Consensus 328 ~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~ 407 (737)
..+.+.+..|+++++.. .+++..+++.|++|+||+++++|.++..|.+.+.. ...+++++|.+.+||++++
T Consensus 242 ~~~~~~~~~~~~ii~~~-----~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~----~~~~l~sl~~v~~gga~~~ 312 (537)
T KOG1176|consen 242 TLLLSLLAGGTTIICLR-----KFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIV----KKYDLSSLRSVLSGGAPLS 312 (537)
T ss_pred HHHHHHHhCCceEEECC-----CCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCcc----CcccCCccEEEEecCCCCC
Confidence 75555666666666654 47999999999999999999999999999998633 5678999999999999999
Q ss_pred HHHHHHHHHhcC-CcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccc
Q psy8076 408 HETKNWAEKSFN-VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPES 486 (737)
Q Consensus 408 ~~~~~~~~~~~~-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (737)
+++.+++.+.++ ..+.+.||+||+|+.++.+... .. .++ +++|++++|.. ..
T Consensus 313 ~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~--~e-~k~-~svG~~~~g~~-----~~------------------ 365 (537)
T KOG1176|consen 313 PATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWG--PE-RKP-GSVGRLLPGVR-----VK------------------ 365 (537)
T ss_pred HHHHHHHHHhCCCceEEEeeccccccCceeecCCC--cc-Ccc-cccCccccceE-----EE------------------
Confidence 999999999998 8899999999999887776542 11 455 89999999877 66
Q ss_pred cccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEec
Q psy8076 487 LRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDE 566 (737)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~ 566 (737)
|.++.|+.+++++.||||++|+ .++.||++||+.|.+.+-. +|||+|||+|++|+
T Consensus 366 --------------------v~~e~g~~l~~~~~GEI~vrg~---~imkGY~~NpeaT~~~~~~--~GW~~TGDiGy~D~ 420 (537)
T KOG1176|consen 366 --------------------VLDETGVSLGPNQTGEICVRGP---QVMKGYLKNPEATKEAFDD--DGWFHTGDLGYFDE 420 (537)
T ss_pred --------------------eeCCCCCCCCCCCceEEEEECc---ccchhhcCChHHHHhhccc--CCccccCceEEEcC
Confidence 8899999999999999999999 9999999999999888733 49999999999999
Q ss_pred CceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCC
Q psy8076 567 NGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLER 646 (737)
Q Consensus 567 dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 646 (737)
||+|+|.+|++|+||.+|+.|+|.|||++|..||.|.|||||+++|+..||.++|||+.+++ .
T Consensus 421 DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g------------~----- 483 (537)
T KOG1176|consen 421 DGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKG------------S----- 483 (537)
T ss_pred CCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCC------------C-----
Confidence 99999999999999999999999999999999999999999999999999999999999875 1
Q ss_pred CCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHHHcCC
Q psy8076 647 PTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNK 724 (737)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~~ 724 (737)
...+++|+++++++++.|++|+.++|+++||||+||||+|+.|++++.+.
T Consensus 484 ----------------------------~lte~di~~~v~k~l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~~ 533 (537)
T KOG1176|consen 484 ----------------------------TLTEKDIIEYVRKKLPAYKLPGGVVFVDELPKTPNGKILRRKLRDIAKKL 533 (537)
T ss_pred ----------------------------cCCHHHHHHHHHhhCChhhccCeEEEeccCCCCCcchHHHHHHHHHHHhc
Confidence 23478999999999999999999999999999999999999999998764
|
|
| >KOG1177|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-75 Score=590.98 Aligned_cols=515 Identities=22% Similarity=0.255 Sum_probs=442.7
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++-++++-.+++- ||+.|+++..+ ..++||+|+...++.+|+.|..+|+++||||++..||+.+|+..+|||.++
T Consensus 51 Tigq~l~~~t~~v-~dkea~Vf~~e----g~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~A 125 (596)
T KOG1177|consen 51 TIGQLLETTTERV-PDKEAAVFDHE----GIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARA 125 (596)
T ss_pred cHHHHHHHHhhcc-CcceEEEEeec----cchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHh
Confidence 5778888888887 99999998752 356999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHH-------------hcCCCCCeEEEEecc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALE-------------ISSCKPDYCIIFQRR 224 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~viv~~~~ 224 (737)
|.+.|++||+|...++++.|++.+++++|+..... .-.|.+.+.+..- .+| .+.+++..+++
T Consensus 126 G~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k----~~ny~~~l~~icPEv~~~~~G~lkS~~lp-~lthvi~~~ed 200 (596)
T KOG1177|consen 126 GLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFK----TQNYYETLLEICPEVMRGDPGQLKSELLP-ELTHVILADED 200 (596)
T ss_pred ceEEeccCcccccHHHHHHHhhcCeEEEEccchhh----hchHHHHHHHhhHHhhcCCCccccccccc-cceEEEecCCC
Confidence 99999999999999999999999999999976532 2223333333321 122 45666666532
Q ss_pred cccccccCCCCcccHHHHHhhcCC-------CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHH
Q psy8076 225 CVEEAELTPGYDILWDDALAQRLS-------HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIAT 297 (737)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~ 297 (737)
....+.+.+.+.+..... .......||+++.|.||||||| .|||+.+||.|++++
T Consensus 201 ------~~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG------------~PKgatLsH~~~~Nn 262 (596)
T KOG1177|consen 201 ------HPLPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTG------------APKGATLSHYNFLNN 262 (596)
T ss_pred ------CcCCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCC------------CCcceeeehhhhhhh
Confidence 123455667777665443 1122367899999999999999 999999999997777
Q ss_pred HHHHHhhhhcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHH
Q psy8076 298 LAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRV 377 (737)
Q Consensus 298 ~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~ 377 (737)
... ....+++.++++++...|++|..|....++.+|..|+|+|++.. .+++...++.|+++++|.++.+|+|+..
T Consensus 263 a~~-vg~r~g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~----~f~~k~alqai~~ekcT~l~gtPtM~~D 337 (596)
T KOG1177|consen 263 ARA-VGARAGYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAP----SFDPKDALQAISNEKCTTLYGTPTMFVD 337 (596)
T ss_pred HHH-HHHHhCcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCC----CCChHHHHHHHHhhceEEEecChHHHHH
Confidence 665 56678999999999999999999988889999999999999764 4899999999999999999999999999
Q ss_pred HHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcCC-cccccccccccccccccccccCCCCCCCCCCccCCC
Q psy8076 378 IRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNV-TMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLP 456 (737)
Q Consensus 378 l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~-~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p 456 (737)
|++.+.. ...+++++|.+++||+++++++.+.+.+.++. .+...||+||++...+....+ +.+.....++|+.
T Consensus 338 lln~~~~----~~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~--D~~~~~~ksVG~~ 411 (596)
T KOG1177|consen 338 LLNIPQK----QQVDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLG--DPPEERIKSVGHL 411 (596)
T ss_pred Hhcchhh----ccCchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCC--CCHHHHHhhhhhc
Confidence 9987766 77899999999999999999999999987775 467889999999777765442 2222222688888
Q ss_pred cCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccc
Q psy8076 457 FPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMST 536 (737)
Q Consensus 457 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~g 536 (737)
+++.+ .. |+|.+|..+|.|..|||+++|+ +.|.|
T Consensus 412 m~h~E-----a~--------------------------------------iv~~~g~~v~~~~~Gel~iRGY---~tMl~ 445 (596)
T KOG1177|consen 412 MDHYE-----AA--------------------------------------IVDKDGSEVPLGTKGELLIRGY---STMLG 445 (596)
T ss_pred ccccc-----cc--------------------------------------cccCCCCccccCCCceEEEEec---hhhee
Confidence 88888 77 9999999999999999999999 99999
Q ss_pred cccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCC
Q psy8076 537 LYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKG 616 (737)
Q Consensus 537 y~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~ 616 (737)
||++++.+.+..- .+.||+|||.|++|++|+++|+||.+|+|+.+|++|+|.|||+.|.+||.|.+|.|||++|+..|
T Consensus 446 Ywg~~~kT~eti~--~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~G 523 (596)
T KOG1177|consen 446 YWGEEEKTKETIG--NDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLG 523 (596)
T ss_pred ecCCcccchhhcc--cccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCccc
Confidence 9999998887653 38899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeee
Q psy8076 617 EIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFK 696 (737)
Q Consensus 617 ~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~ 696 (737)
|.++|+|.+... . ...-..++|+.+|+.++..|++|+
T Consensus 524 E~VCA~vRLqe~------------~-------------------------------e~~~t~E~lKa~Ck~klaHFKiPk 560 (596)
T KOG1177|consen 524 EEVCACVRLQEG------------A-------------------------------EGKTTAETLKAMCKGKLAHFKIPK 560 (596)
T ss_pred ceEEEEEEeecc------------c-------------------------------cccccHHHHHHHHhcccccccCCc
Confidence 999999999876 1 111357899999999999999999
Q ss_pred eEEEcCCCCCCCCchhhHHHHHHHHc
Q psy8076 697 LSTSVTGLPRTRSGKTARKSIVDMAR 722 (737)
Q Consensus 697 ~~~~v~~lP~t~sGKi~R~~l~~~~~ 722 (737)
+|+++++||+|.+|||+|-.++++..
T Consensus 561 y~vf~~~FPlT~tGKIqKFeir~~~k 586 (596)
T KOG1177|consen 561 YFVFVDEFPLTTTGKIQKFEIREMSK 586 (596)
T ss_pred EEEEeccCcccccccchhHHHHHHHH
Confidence 99999999999999999999999988
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-71 Score=638.81 Aligned_cols=528 Identities=30% Similarity=0.553 Sum_probs=443.1
Q ss_pred CCCCCCchhHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHH
Q psy8076 69 KWFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAI 148 (737)
Q Consensus 69 ~~~~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~v 148 (737)
+|++++.+|+++++++++++..+|+++|+++.++. ..+.+||+||+++++++|++|.++|+++||+|+++++|+++++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~ 112 (570)
T PRK04319 35 SWLETGKVNIAYEAIDRHADGGRKDKVALRYLDAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELY 112 (570)
T ss_pred ccCCCCceeHHHHHHHHhhccCCCCceEEEEECCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHH
Confidence 78999999999999999988544999999987522 3579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccc
Q psy8076 149 VSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEE 228 (737)
Q Consensus 149 va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~ 228 (737)
+++|||+++|++++|+++.++.+++.+++++++++++++++....... . ..++ ..+.++++.....
T Consensus 113 ~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~--------~---~~~~-~~~~~~~~~~~~~-- 178 (570)
T PRK04319 113 FALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKP--------A---DDLP-SLKHVLLVGEDVE-- 178 (570)
T ss_pred HHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccc--------h---hcCC-CceEEEEECCCcC--
Confidence 999999999999999999999999999999999999999875432110 0 1122 3445555443210
Q ss_pred cccCCCCcccHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhc
Q psy8076 229 AELTPGYDILWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYN 307 (737)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~ 307 (737)
.......+.+....... ....+..++++++++||||||| .||||+++|++++..... ....++
T Consensus 179 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PKgV~~s~~~l~~~~~~-~~~~~~ 242 (570)
T PRK04319 179 ---EGPGTLDFNALMEQASDEFDIEWTDREDGAILHYTSGSTG------------KPKGVLHVHNAMLQHYQT-GKYVLD 242 (570)
T ss_pred ---CCcCccCHHHHHhhcCCcCCccccCCCCCEEEEeCCCCCC------------CCCEEEEecHHHHHHHHH-HHHhcC
Confidence 11223456655543322 2334467789999999999999 999999999886655443 455678
Q ss_pred CCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCcc
Q psy8076 308 MGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTL 387 (737)
Q Consensus 308 ~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~ 387 (737)
+.++|++++..+++|.+|+.+.++.+|..|+++++... .+++..+++.|+++++|+++++|++++.|.+......
T Consensus 243 ~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~- 317 (570)
T PRK04319 243 LHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGG----RFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLV- 317 (570)
T ss_pred CCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECC----CCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCccc-
Confidence 89999999999999999988889999999999999764 4689999999999999999999999999987643211
Q ss_pred ccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCccee
Q psy8076 388 GAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNI 467 (737)
Q Consensus 388 ~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~ 467 (737)
...++++||.+++||+++++++.+++.+.++.++++.||+||+++.++.... .....+ +++|+|++|+. +
T Consensus 318 -~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~---~~~~~~-~~~G~p~~g~~-----~ 387 (570)
T PRK04319 318 -KKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYP---AMDIKP-GSMGKPLPGIE-----A 387 (570)
T ss_pred -ccCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCC---CCCCCC-CcCcCCCCCCE-----E
Confidence 3456889999999999999999999999999999999999999876544321 222344 78899999888 7
Q ss_pred eeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHh
Q psy8076 468 VMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKI 547 (737)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~ 547 (737)
+ |+|++|.++++|+.|||+|+|++| +++.|||++++.+.+.
T Consensus 388 ~--------------------------------------i~d~~~~~~~~g~~Gel~i~~~~~-~~~~GY~~~~~~~~~~ 428 (570)
T PRK04319 388 A--------------------------------------IVDDQGNELPPNRMGNLAIKKGWP-SMMRGIWNNPEKYESY 428 (570)
T ss_pred E--------------------------------------EECCCCCCCCCCCceEEEEcCCCC-hHHhHhcCCHHHhhhh
Confidence 7 999999999999999999998433 8999999999988876
Q ss_pred hccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeec
Q psy8076 548 YFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKR 627 (737)
Q Consensus 548 ~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~ 627 (737)
|. +|||+|||+++++++|+++|+||.||+||++|++|+|.|||++|.+||.|.+++|++++++..++.+++++++.+
T Consensus 429 ~~---~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~ 505 (570)
T PRK04319 429 FA---GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRP 505 (570)
T ss_pred hc---CCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECC
Confidence 52 789999999999999999999999999999999999999999999999999999999999888999999999876
Q ss_pred CCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCC
Q psy8076 628 IPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRT 707 (737)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t 707 (737)
+ . ...+.+.++|+++++++|+.|++|+.++++++||+|
T Consensus 506 ~------------~------------------------------~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t 543 (570)
T PRK04319 506 G------------Y------------------------------EPSEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKT 543 (570)
T ss_pred C------------C------------------------------CCCHHHHHHHHHHHHHhcccccCCcEEEEeCCCCCC
Confidence 5 1 112456789999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHcCCCCC
Q psy8076 708 RSGKTARKSIVDMARNKPLR 727 (737)
Q Consensus 708 ~sGKi~R~~l~~~~~~~~~~ 727 (737)
++||++|+.|+++..+....
T Consensus 544 ~~GKv~r~~L~~~~~~~~~~ 563 (570)
T PRK04319 544 RSGKIMRRVLKAWELGLPEG 563 (570)
T ss_pred CchhhhHHHHHHHHhCCCcC
Confidence 99999999999997654443
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-72 Score=633.53 Aligned_cols=508 Identities=28% Similarity=0.410 Sum_probs=422.0
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++...+.+++..+ |+++|+++.+.. .++||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++
T Consensus 12 ~~~~~l~~~a~~~-~~~~a~~~~~~~----~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~ 86 (534)
T COG0318 12 TLASLLERAARRN-PDRPALIFLGRG----GRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRA 86 (534)
T ss_pred cHHHHHHHHHHhC-CCceEEEEcCCC----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 5788999999998 999999998721 15999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCc-
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYD- 236 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~- 236 (737)
|++++|++|.+...++.++++++++++++++.. +...+.......+ ....+...... ....
T Consensus 87 Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~ 148 (534)
T COG0318 87 GAVAVPLNPRLTPRELAYILNDAGAKVLITSAE---------FAALLEAVAEALP-VVLVVLLVGDA--------DDRLP 148 (534)
T ss_pred CEEEeecCcccCHHHHHHHHHhcCCeEEEEccc---------chhHHHHHhccCC-cceEEEecccc--------ccccc
Confidence 999999999999999999999999999999875 1222333222221 11111111110 0000
Q ss_pred ccHHHHHhhcCC--CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhc--CCCCc
Q psy8076 237 ILWDDALAQRLS--HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYN--MGQDD 312 (737)
Q Consensus 237 ~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~--~~~~d 312 (737)
..+.+....... ....+..++++++++||||||| .||||++||++++.+... +...++ ++.+|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG------------~PKgv~~th~~~~~~~~~-~~~~~~~~~~~~d 215 (534)
T COG0318 149 ITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTG------------LPKGVVLTHRNLLANAAG-IAAALGGGLTPDD 215 (534)
T ss_pred ccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCC------------CCCEeEEecHhHHHHHHH-HHHHhcccCCCCc
Confidence 244555333222 1122267899999999999999 999999999997776554 455566 89999
Q ss_pred EEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCC
Q psy8076 313 VWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYS 392 (737)
Q Consensus 313 ~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~ 392 (737)
++++++|++|++|+...++.+++.|+++++.++. .+++..++..+.++++|++.++|+++..|+..... ...+
T Consensus 216 ~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~~---~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~----~~~~ 288 (534)
T COG0318 216 VVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPE---PFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEK----DDDD 288 (534)
T ss_pred eEEEecChHHHHHHHHHHHHHHHcCCEEEeCCCC---CcCHHHHHHHHHHhcceEEecchHHHHHHHhCCcc----Cccc
Confidence 9999999999999988777789999999998742 36899999999999999999999999999887655 2333
Q ss_pred CCC-ccEEEeecCCCCHHHHHHHHHhcC-CcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeee
Q psy8076 393 TDS-LRYLFVAGEHCDHETKNWAEKSFN-VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVML 470 (737)
Q Consensus 393 l~~-Lr~i~~gGe~l~~~~~~~~~~~~~-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~ 470 (737)
+++ ||.+++||++++++++++|.+.++ ..+++.||+||++..++...... . ..+. +.+|+|+||++ ++
T Consensus 289 ~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-~-~~~~-~~~G~~~pg~~-----v~-- 358 (534)
T COG0318 289 LSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDD-L-LAKP-GSVGRPLPGVE-----VR-- 358 (534)
T ss_pred cccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCch-h-hhcC-CcccccCCCcE-----EE--
Confidence 444 999999999999999999999998 47999999999997776654311 0 1233 56688888877 77
Q ss_pred ccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCC-ccCCCcceEEEEecCCCCCcccccccChhhhHHhhc
Q psy8076 471 NWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGS-ECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYF 549 (737)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~-~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~ 549 (737)
|+|+++. ++| |++|||+|+|| +++.|||++++.+.+.|
T Consensus 359 ------------------------------------Ivd~~~~~~~p-g~vGei~irgp---~v~~GY~~~pe~t~~~f- 397 (534)
T COG0318 359 ------------------------------------IVDPDGGEVLP-GEVGEIWVRGP---NVMKGYWNRPEATAEAF- 397 (534)
T ss_pred ------------------------------------EEeCCCCccCC-CCceEEEEECc---hhhhhhcCChHHHHHhh-
Confidence 9997765 555 99999999999 99999999999998854
Q ss_pred cCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCC
Q psy8076 550 TKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIP 629 (737)
Q Consensus 550 ~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~ 629 (737)
.+ +|||+|||+|++|+||+++|+||.+|+|+.+|++|+|.|||+++.+||.|.+|+|++++++..||.++|+|+++++
T Consensus 398 ~~-~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~- 475 (534)
T COG0318 398 DE-DGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPG- 475 (534)
T ss_pred cc-CCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCC-
Confidence 32 6999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCC
Q psy8076 630 LDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRS 709 (737)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~s 709 (737)
. ......++|+++++++++.+++|+.++++++||+|++
T Consensus 476 -----------~-------------------------------~~~~~~~~i~~~~~~~l~~~~~P~~v~~v~~lP~t~s 513 (534)
T COG0318 476 -----------G-------------------------------DAELTAEELRAFLRKRLALYKVPRIVVFVDELPRTAS 513 (534)
T ss_pred -----------C-------------------------------CCCCCHHHHHHHHHhhhhcccCCeEEEEeCCCCCCCc
Confidence 1 0011478899999999999999999999999999999
Q ss_pred chhhHHHHHHHHcC
Q psy8076 710 GKTARKSIVDMARN 723 (737)
Q Consensus 710 GKi~R~~l~~~~~~ 723 (737)
||++|+.|++.+..
T Consensus 514 GKi~r~~lr~~~~~ 527 (534)
T COG0318 514 GKIDRRALREEYRA 527 (534)
T ss_pred hhhhHHHHHHHHHh
Confidence 99999999999887
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-71 Score=698.28 Aligned_cols=611 Identities=16% Similarity=0.211 Sum_probs=452.3
Q ss_pred ceeeeeeecccccccccccCC-hhHHHHHHHHHhhChhhHHHHHHhhcccccCccccccCCCCCCCCCCCCCchhHHHHH
Q psy8076 4 FKCDISLDFSGNKINECTSNQ-NDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNA 82 (737)
Q Consensus 4 ~~~~~~~~y~~~~~~~~~~~~-~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~ 82 (737)
.++.++++|++++|+++++++ +.+|..++++++++|+..+.++. .+.-.+. +.+... .....|.. ...+++++
T Consensus 168 ~~l~l~~~y~~~lf~~~~i~~l~~~f~~lL~~~~~~p~~~l~~l~-~~~~~~~--~~~~~~-~~~~~~~~--~~~~l~~~ 241 (1389)
T TIGR03443 168 PELELSIYYNSLLFSSDRITIVADQLAQLLSAASSNPDEPIGKVS-LITPSQK--SLLPDP-TKDLDWSG--FRGAIHDI 241 (1389)
T ss_pred CcEEEEEEEchhcCCHHHHHHHHHHHHHHHHHHHhCcCCceeccc-CCCHHHH--hhhhcc-ccccCcCc--ccCcHHHH
Confidence 357889999999999999999 56799999999999999887772 2221111 111110 11123322 12358899
Q ss_pred HhhhhhccCCCceEEEEeCCC---CCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCC
Q psy8076 83 IDRHVERGMAKKVALIHDSPV---TKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGA 159 (737)
Q Consensus 83 l~~~~~~~~pd~~Al~~~~~~---~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~ 159 (737)
|+++++++ |+++|+++.... ....+++||+||+++++++|++|.++|+++|++|+|+++|++++++++|||+++|+
T Consensus 242 ~~~~a~~~-pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~l~~G~ 320 (1389)
T TIGR03443 242 FADNAEKH-PDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAGA 320 (1389)
T ss_pred HHHHHHhC-CCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHHHhhCc
Confidence 99999998 999999874311 12357999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhc---CCCCCeEEEEecccccccccCCCCc
Q psy8076 160 IHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEIS---SCKPDYCIIFQRRCVEEAELTPGYD 236 (737)
Q Consensus 160 ~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~viv~~~~~~~~~~~~~~~~ 236 (737)
+++|++|.++.+++.+++++++++++++...... ....+....... ......+.+.... ....... .
T Consensus 321 ~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~ 390 (1389)
T TIGR03443 321 TFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGT------LDQLVRDYIDKELELRTEIPALALQDDG-SLVGGSL---E 390 (1389)
T ss_pred EEeccCCCCcHHHHHHHHHhcCCCEEEEeccccc------cchhhhhhhhcccccccccceEEecccc-ccccccc---c
Confidence 9999999999999999999999999998764210 011111111000 0011111111100 0000000 0
Q ss_pred ccHHHHHhh----cCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCc
Q psy8076 237 ILWDDALAQ----RLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDD 312 (737)
Q Consensus 237 ~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d 312 (737)
....+.... ..........+++++||+||||||| .||||+++|++++..+.+ +...+++.++|
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG------------~PKgV~~sh~~l~~~~~~-~~~~~~~~~~d 457 (1389)
T TIGR03443 391 GGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEG------------IPKGVLGRHFSLAYYFPW-MAKRFGLSEND 457 (1389)
T ss_pred cccccccccccccccCCCCCcCCCCCceEEEECCCCCC------------CCCEEEeccHHHHHHHHH-HHHhcCCCCCC
Confidence 000000000 0001112356799999999999999 999999999887666554 55668899999
Q ss_pred EEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCC
Q psy8076 313 VWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYS 392 (737)
Q Consensus 313 ~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~ 392 (737)
++++.++++|+.+ .+.++.+|+.|+++++.+... ..++..+++.|+++++|+++++|++++.|.... ...
T Consensus 458 ~~~~~~~~~~d~~-~~~i~~~L~~G~~l~~~~~~~--~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~-------~~~ 527 (1389)
T TIGR03443 458 KFTMLSGIAHDPI-QRDMFTPLFLGAQLLVPTADD--IGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA-------TTP 527 (1389)
T ss_pred EEEEecCceecch-HHHHHHHHhCCCEEEEcChhh--ccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc-------ccc
Confidence 9999999999988 466999999999999976432 357889999999999999999999999987542 225
Q ss_pred CCCccEEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCCC------CCCCCccCCCcCCCCCCcc
Q psy8076 393 TDSLRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDT------VPPKYSTGLPFPGYDGKYV 465 (737)
Q Consensus 393 l~~Lr~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~------~~~~~~~G~p~~g~~~~~~ 465 (737)
+++||.+++|||++++...+++.+.. +.+++|.||+||++..++.......... .....++|+|++++.
T Consensus 528 ~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~---- 603 (1389)
T TIGR03443 528 IPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQ---- 603 (1389)
T ss_pred CCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCE----
Confidence 78999999999999999999888765 5789999999999876665433111100 011146677777766
Q ss_pred eeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCC--CCccCCCcceEEEEecCCCCCcccccccChhh
Q psy8076 466 NIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRND--GSECEPHELGRIVVKLPLPPGTMSTLYKAPQR 543 (737)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~--g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~ 543 (737)
++ |+|++ ++++|.|+.|||+|+|| ++++||+++++.
T Consensus 604 -~~--------------------------------------ivd~~~~~~~~~~G~~GEL~i~G~---~v~~GY~~~p~~ 641 (1389)
T TIGR03443 604 -LL--------------------------------------VVNRNDRTQTCGVGEVGEIYVRAG---GLAEGYLGLPEL 641 (1389)
T ss_pred -EE--------------------------------------EECCccCCCcCCCCCceEEEeccc---ccchhcCCChhH
Confidence 66 99965 57899999999999999 999999999999
Q ss_pred hHHhhccC--------------------------CCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHh
Q psy8076 544 FMKIYFTK--------------------------FPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVL 597 (737)
Q Consensus 544 ~~~~~~~~--------------------------~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~ 597 (737)
+.+.|... .+|||+|||+|++++||+|+|+||.||+||++|+||+|.|||++|.
T Consensus 642 t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~ 721 (1389)
T TIGR03443 642 NAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLS 721 (1389)
T ss_pred hhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHHH
Confidence 98887531 2579999999999999999999999999999999999999999999
Q ss_pred cCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHH
Q psy8076 598 SHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEI 677 (737)
Q Consensus 598 ~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (737)
+||.|.+++|++.+++..++.+++|+++..... .. .... . .. .........+.........
T Consensus 722 ~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~-~~-----~~~~---~------~~----~~~~~~~~~~~~~~~~~~~ 782 (1389)
T TIGR03443 722 QHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSD-EL-----EEFK---S------EV----DDEESSDPVVKGLIKYRKL 782 (1389)
T ss_pred hCcchheeEEEEeeCCCCCeEEEEEEeccCccc-cc-----cccc---c------cc----ccccccccchhhhhhhhhh
Confidence 999999999999888877888999998763200 00 0000 0 00 0000000000000111234
Q ss_pred HHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHH
Q psy8076 678 GKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVD 719 (737)
Q Consensus 678 ~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~ 719 (737)
.++++++++++||.||+|..++++++||+|+|||+||++|++
T Consensus 783 ~~~l~~~l~~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~ 824 (1389)
T TIGR03443 783 IKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPF 824 (1389)
T ss_pred HHHHHHHHHhhCCcccCCceEEEcccCCCCCCccccHhhcCC
Confidence 678999999999999999999999999999999999999964
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-72 Score=753.12 Aligned_cols=561 Identities=18% Similarity=0.245 Sum_probs=463.5
Q ss_pred ceeeeeeecccccccccccCC-hhHHHHHHHHHhhChhhHHHHHHhhcccccCccccccCCCCCCCCCCCCCchhHHHHH
Q psy8076 4 FKCDISLDFSGNKINECTSNQ-NDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNA 82 (737)
Q Consensus 4 ~~~~~~~~y~~~~~~~~~~~~-~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~ 82 (737)
.++.+.++|++++|++.++++ +++|..+++..+++|+..++++. .+...+ ..+++..++.+...+... .+++++
T Consensus 3026 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~l~-~l~~~~-~~~~~~~~~~~~~~~~~~---~~~~~l 3100 (3956)
T PRK12467 3026 DTLELEFSYDRQHFDAAAIERLAESFDRLLQAMLNNPAARLGELP-TLAAHE-RRQVLHAWNATAAAYPSE---RLVHQL 3100 (3956)
T ss_pred cceeEEEEechhhCCHHHHHHHHHHHHHHHHHHHhCcCCchhhcc-CCCHHH-HHHHHHhhccCCCCCCcc---ccHHHH
Confidence 367899999999999999999 66899999999999999888772 222222 224445555443332222 368899
Q ss_pred HhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEE
Q psy8076 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHS 162 (737)
Q Consensus 83 l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~v 162 (737)
|+++++++ ||++|+++.+ +++||+||+++++++|+.|.++|+++|++|+|+++|++++++++|||+++|++|+
T Consensus 3101 ~~~~a~~~-p~~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~v 3173 (3956)
T PRK12467 3101 IEAQVART-PEAPALVFGD------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYV 3173 (3956)
T ss_pred HHHHHHhC-CCcceEeeCC------cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEee
Confidence 99999998 9999999987 8999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCC-CCCeEEEEecccccccccCCCCcccHHH
Q psy8076 163 VVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSC-KPDYCIIFQRRCVEEAELTPGYDILWDD 241 (737)
Q Consensus 163 pl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~viv~~~~~~~~~~~~~~~~~~~~~ 241 (737)
|++|.+|.+++.+++++++++++|++...... ++. ....++.++.. .
T Consensus 3174 pld~~~p~~rl~~il~~~~~~~vlt~~~~~~~----------------~~~~~~~~~~~~~~~----------------~ 3221 (3956)
T PRK12467 3174 PLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQ----------------LPAPAGDTALTLDRL----------------D 3221 (3956)
T ss_pred cCCCCChHHHHHHHHhCCCCcEEEechhhhhh----------------cccccCCceeeecch----------------h
Confidence 99999999999999999999999998643211 000 01112222111 0
Q ss_pred HHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccc
Q psy8076 242 ALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMG 321 (737)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~ 321 (737)
..............++++|||+||||||| +||||+++|++++..+.+ +...++++++|++++++|++
T Consensus 3222 ~~~~~~~~~~~~~~~~~~a~ii~TSGSTG------------~PKgV~~~h~~l~~~~~~-~~~~~~~~~~d~~l~~~~~~ 3288 (3956)
T PRK12467 3222 LNGYSENNPSTRVMGENLAYVIYTSGSTG------------KPKGVGVRHGALANHLCW-IAEAYELDANDRVLLFMSFS 3288 (3956)
T ss_pred hcccCCCCCcccCCCCceEEEEEccCCCC------------CcceeeehhHHHHHHHHH-HHHhcCCCcCCEEEEecCcc
Confidence 00011112223467899999999999999 999999999986665554 56678999999999999999
Q ss_pred cccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEe
Q psy8076 322 WVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFV 401 (737)
Q Consensus 322 ~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~ 401 (737)
|+.+ .++++.+|..|+++++.+. . ..++..+++.|+++++|++.++|++++.|.+... ..++++||.+++
T Consensus 3289 fd~~-~~~~~~~L~~G~~l~i~~~-~--~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~------~~~~~~lr~~~~ 3358 (3956)
T PRK12467 3289 FDGA-QERFLWTLICGGCLVVRDN-D--LWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG------GADCASLDIYVF 3358 (3956)
T ss_pred HhHH-HHHHHHHHhCCCEEEECCc-c--cCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc------ccCCCCceEEEE
Confidence 9988 6779999999999999873 2 3689999999999999999999999999976532 236788999999
Q ss_pred ecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccc
Q psy8076 402 AGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCV 480 (737)
Q Consensus 402 gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~ 480 (737)
|||++++++.++|.+.+ +..++|.||+||+++.++...............++|+|++|+. ++
T Consensus 3359 gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~-----~~------------ 3421 (3956)
T PRK12467 3359 GGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRS-----IY------------ 3421 (3956)
T ss_pred ecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCE-----EE------------
Confidence 99999999999998877 4689999999999987765443211111112268899999988 87
Q ss_pred cccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccC-----CCCe
Q psy8076 481 RILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTK-----FPGY 555 (737)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~-----~~g~ 555 (737)
|+|++++++|.|++|||+|+|+ ++++||+|+++.|.+.|..+ ..+|
T Consensus 3422 --------------------------v~d~~~~~vp~G~~GEL~i~G~---~v~~GY~~~~~~T~~~F~~~p~~~~g~r~ 3472 (3956)
T PRK12467 3422 --------------------------VLDGQLNPVPVGVAGELYIGGV---GLARGYHQRPSLTAERFVADPFSGSGGRL 3472 (3956)
T ss_pred --------------------------EECCCCCCCCCCCCceEEEcch---hhhhhccCCcccchhhccCCCCCCCCcee
Confidence 9999999999999999999999 99999999999998888643 2359
Q ss_pred eecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCc
Q psy8076 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGF 635 (737)
Q Consensus 556 ~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~ 635 (737)
|||||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|.+|+|++..+ ..++.+++||+....
T Consensus 3473 yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~-~~~~~lva~v~~~~~------- 3544 (3956)
T PRK12467 3473 YRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDG-AGGKQLVAYVVPADP------- 3544 (3956)
T ss_pred eccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEEEecC-CCCcEEEEEEeCCCC-------
Confidence 999999999999999999999999999999999999999999999999999998754 467789999987653
Q ss_pred cccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHH
Q psy8076 636 SGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARK 715 (737)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~ 715 (737)
. ....++++++++++||.||+|..++++++||+|+|||+||+
T Consensus 3545 -----~---------------------------------~~~~~~l~~~l~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~ 3586 (3956)
T PRK12467 3545 -----Q---------------------------------GDWRETLRDHLAASLPDYMVPAQLLVLAAMPLGPNGKVDRK 3586 (3956)
T ss_pred -----C---------------------------------cccHHHHHHHHhccCChhhCCCeeeeeccCCCCCCCccchh
Confidence 0 12467899999999999999999999999999999999999
Q ss_pred HHHHHHcC
Q psy8076 716 SIVDMARN 723 (737)
Q Consensus 716 ~l~~~~~~ 723 (737)
+|++....
T Consensus 3587 ~L~~~~~~ 3594 (3956)
T PRK12467 3587 ALPDPDAK 3594 (3956)
T ss_pred hcCCCCcc
Confidence 99986544
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-71 Score=751.76 Aligned_cols=567 Identities=15% Similarity=0.196 Sum_probs=463.9
Q ss_pred ceeeeeeecccccccccccCC-hhHHHHHHHHHhhChhhHHHHHHhhcccccCccccccCCCCCCCCCCCCCchhHHHHH
Q psy8076 4 FKCDISLDFSGNKINECTSNQ-NDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNA 82 (737)
Q Consensus 4 ~~~~~~~~y~~~~~~~~~~~~-~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~ 82 (737)
.+++++++|++++|++.++++ +++|..++++++++|+..++++. .+... ...+++..++.+...+... ..++++
T Consensus 3651 ~~l~~~l~y~~~~~~~~~~~~l~~~f~~~L~~l~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~ 3725 (4334)
T PRK05691 3651 DDLGLHLSYDQRYFDAPTVERLLGEFKRLLLALVQGFHGDLSELP-LLGEQ-ERDFLLDGCNRSERDYPLE---QSYVRL 3725 (4334)
T ss_pred CceEEEEEEchhhCCHHHHHHHHHHHHHHHHHHHhCcCCChhhcC-CCCHH-HHHHHHHhhCCccCCCccc---cCHHHH
Confidence 468899999999999999999 67899999999999999887772 22221 2223444444433332222 257899
Q ss_pred HhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEE
Q psy8076 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHS 162 (737)
Q Consensus 83 l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~v 162 (737)
|+++++++ ||++|+++.+ ..+||+||+++++++|+.|.++|+++|++|+|++++++++++++|||+|+|++||
T Consensus 3726 ~~~~~~~~-p~~~Av~~~~------~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~v 3798 (4334)
T PRK05691 3726 FEAQVAAH-PQRIAASCLD------QQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYL 3798 (4334)
T ss_pred HHHHHHhC-CCceEEEcCC------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEe
Confidence 99999999 9999999987 8899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCC-CCCeEEEEecccccccccCCCCcccHHH
Q psy8076 163 VVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSC-KPDYCIIFQRRCVEEAELTPGYDILWDD 241 (737)
Q Consensus 163 pl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~viv~~~~~~~~~~~~~~~~~~~~~ 241 (737)
||+|.+|.+++.+++++++++++|+++..... .......+.. ....+++.... ...
T Consensus 3799 pld~~~p~~r~~~il~~~~~~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-------------~~~- 3855 (4334)
T PRK05691 3799 PLDPGLPAQRLQRIIELSRTPVLVCSAACREQ---------ARALLDELGCANRPRLLVWEEV-------------QAG- 3855 (4334)
T ss_pred CCCCCChHHHHHHHHHhcCCCEEEecCcccch---------hhhhhcccccccccceeeeccc-------------ccc-
Confidence 99999999999999999999999998764321 1111111110 11112221110 000
Q ss_pred HHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccc
Q psy8076 242 ALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMG 321 (737)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~ 321 (737)
............++++|||+||||||| +||||+++|+++++...+ ....++++++|+++++++++
T Consensus 3856 --~~~~~~~~~~~~~~~~ayvi~TSGSTG------------~PKGV~~~h~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~ 3920 (4334)
T PRK05691 3856 --EVASHNPGIYSGPDNLAYVIYTSGSTG------------LPKGVMVEQRGMLNNQLS-KVPYLALSEADVIAQTASQS 3920 (4334)
T ss_pred --cccccCCCCCCCCCceEEEEECCCCCC------------CCCEEEeehHHHHHHHHH-HHHhcCCCccceEEEecCCc
Confidence 000011223457899999999999999 999999999997666655 55668999999999999999
Q ss_pred cccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEe
Q psy8076 322 WVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFV 401 (737)
Q Consensus 322 ~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~ 401 (737)
|+.+ +++++.+|+.|+++++++... ..++..+++.++++++|++.++|++++.+..... ..+++||.+++
T Consensus 3921 fd~s-~~~~~~~l~~G~~l~i~~~~~--~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~-------~~~~~lr~~~~ 3990 (4334)
T PRK05691 3921 FDIS-VWQFLAAPLFGARVEIVPNAI--AHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDR-------QALDGLRWMLP 3990 (4334)
T ss_pred hhHH-HHHHHHHHhCCCEEEEcCccc--cCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhcc-------ccCCCceEEEe
Confidence 9998 677999999999999987643 3689999999999999999999999998876422 25679999999
Q ss_pred ecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccc
Q psy8076 402 AGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCV 480 (737)
Q Consensus 402 gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~ 480 (737)
|||++++++.+.|.+.+ ++.++|.||+||++..++............. .++|+|++|+. ++
T Consensus 3991 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~-~~iG~p~~~~~-----~~------------ 4052 (4334)
T PRK05691 3991 TGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSY-LPIGSPTDNNR-----LY------------ 4052 (4334)
T ss_pred cCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCc-CCCCCccCCCE-----EE------------
Confidence 99999999999888765 6799999999999987766544222222222 57999999988 88
Q ss_pred cccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccC-----CCCe
Q psy8076 481 RILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTK-----FPGY 555 (737)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~-----~~g~ 555 (737)
|+|++++++|.|++|||+|+|+ ++++||+|+++.|.+.|..+ ..+|
T Consensus 4053 --------------------------v~d~~~~~~p~g~~GEL~i~G~---~v~~GY~~~~~~t~~~f~~~p~~~~~~~~ 4103 (4334)
T PRK05691 4053 --------------------------LLDEALELVPLGAVGELCVAGT---GVGRGYVGDPLRTALAFVPHPFGAPGERL 4103 (4334)
T ss_pred --------------------------EECCCCCCCCCCCceEEEEecc---cccccccCCcccchhhcccCCCCCCCcee
Confidence 9999999999999999999999 99999999999999888643 3469
Q ss_pred eecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCc
Q psy8076 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGF 635 (737)
Q Consensus 556 ~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~ 635 (737)
|||||+|++++||+|+|+||+|+|||++|+||+++|||++|.++|+|.+|+|+... ...++.++||++....
T Consensus 4104 yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~~~~~v~~a~v~~~~-~~~~~~l~a~~~~~~~------- 4175 (4334)
T PRK05691 4104 YRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAVAVQE-GVNGKHLVGYLVPHQT------- 4175 (4334)
T ss_pred eccCcceeecCCCcEEEecccCCcEEeceEEecHHHHHHHHHhCCCccEEEEEEec-CCCCcEEEEEEeCCcc-------
Confidence 99999999999999999999999999999999999999999999999998887654 3456789999987654
Q ss_pred cccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHH
Q psy8076 636 SGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARK 715 (737)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~ 715 (737)
. .......++|+++|+++||.||+|..++.+++||+|+|||+||+
T Consensus 4176 -----~------------------------------~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~t~~GKidr~ 4220 (4334)
T PRK05691 4176 -----V------------------------------LAQGALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRK 4220 (4334)
T ss_pred -----c------------------------------ccchHHHHHHHHHHHhhCChhhcCcceeecccCCCCCCCcccHh
Confidence 1 12234567899999999999999999999999999999999999
Q ss_pred HHHHH
Q psy8076 716 SIVDM 720 (737)
Q Consensus 716 ~l~~~ 720 (737)
+|++.
T Consensus 4221 ~L~~~ 4225 (4334)
T PRK05691 4221 ALPAL 4225 (4334)
T ss_pred hcCCC
Confidence 99875
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-71 Score=696.48 Aligned_cols=560 Identities=19% Similarity=0.218 Sum_probs=452.2
Q ss_pred ceeeeeeecccccccccccCC-hhHHHHHHHHHhhChhhHHHHHHhhcccccCccccccCCCCCCCCCCCCCchhHHHHH
Q psy8076 4 FKCDISLDFSGNKINECTSNQ-NDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNA 82 (737)
Q Consensus 4 ~~~~~~~~y~~~~~~~~~~~~-~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~ 82 (737)
.++.++++|++++|+++++++ +++|..++++++++|+..++++ +.+...+.. + +..++.+...+ + ..++.++
T Consensus 391 ~~l~~~~~y~~~~f~~~~i~~l~~~~~~ll~~~~~~p~~~i~~~-~~~~~~~~~-~-~~~~~~~~~~~-~---~~~l~~~ 463 (1296)
T PRK10252 391 GGLSIEILANPQRYDEATLIAHAERLKALIAQFAADPALLCGDV-DILLPGEYA-Q-LAQVNATAVEI-P---ETTLSAL 463 (1296)
T ss_pred CcEEEEEEEChhhCCHHHHHHHHHHHHHHHHHHHhCCCCChhhc-CCCCHHHHH-H-HHHhcCCCCCC-C---cCCHHHH
Confidence 468899999999999999999 6689999999999999988877 222222211 2 22222221111 1 1247889
Q ss_pred HhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEE
Q psy8076 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHS 162 (737)
Q Consensus 83 l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~v 162 (737)
|+++++.+ |+++|+++.+ +.+||+||+++++++|+.|.+.|+++|++|+|++++++++++++|||+++|++++
T Consensus 464 ~~~~~~~~-p~~~Al~~~~------~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~v 536 (1296)
T PRK10252 464 VAQQAAKT-PDAPALADAR------YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWL 536 (1296)
T ss_pred HHHHHHhC-CCCeEEEcCC------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 99999988 9999999876 8899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHH
Q psy8076 163 VVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDA 242 (737)
Q Consensus 163 pl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~ 242 (737)
|++|+++.+++.++++++++++++++........ ..+ .. .++.+.. .
T Consensus 537 pld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~-------------~~~-~~-~~~~~~~------------------~ 583 (1296)
T PRK10252 537 PLDTGYPDDRLKMMLEDARPSLLITTADQLPRFA-------------DVP-DL-TSLCYNA------------------P 583 (1296)
T ss_pred ecCccCHHHHHHHHHHhCCCCEEEECcchhhhcc-------------cCC-Cc-eeeeccc------------------c
Confidence 9999999999999999999999999865321100 000 00 0000000 0
Q ss_pred HhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEeccccc
Q psy8076 243 LAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGW 322 (737)
Q Consensus 243 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 322 (737)
.............+++++||+||||||| .||||+++|++++..+.+ +...++++++|++++.+|++|
T Consensus 584 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG------------~PKgV~~~h~~l~~~~~~-~~~~~~~~~~d~~l~~~~~~f 650 (1296)
T PRK10252 584 LAPQGAAPLQLSQPHHTAYIIFTSGSTG------------RPKGVMVGQTAIVNRLLW-MQNHYPLTADDVVLQKTPCSF 650 (1296)
T ss_pred cccccCCCCCCCCCCCeEEEEECCCCCC------------CCCEEEeccHHHHHHHHH-HHHhcCCCCCCEEEEeCCcch
Confidence 0000001112236789999999999999 999999999887666555 566789999999999999999
Q ss_pred ccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEee
Q psy8076 323 VVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVA 402 (737)
Q Consensus 323 ~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~g 402 (737)
+.+ .+.++.+|..|+++++.+... ..++..+++.|+++++|++.++|++++.+.+...... ....+++||.+++|
T Consensus 651 d~~-~~~~~~~l~~G~~l~~~~~~~--~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~--~~~~~~~lr~i~~g 725 (1296)
T PRK10252 651 DVS-VWEFFWPFIAGAKLVMAEPEA--HRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEG--ARQSCASLRQVFCS 725 (1296)
T ss_pred hhh-HHHHHHHHhCCCEEEECChhc--cCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccc--ccccCCCccEEEEe
Confidence 998 567899999999999976433 3789999999999999999999999999887533211 22346899999999
Q ss_pred cCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCC---CCCCCCCccCCCcCCCCCCcceeeeeccccCcccc
Q psy8076 403 GEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQH---DTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHC 479 (737)
Q Consensus 403 Ge~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~---~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~ 479 (737)
||++++++.+.|.+.++.+++|.||+||++..++........ ....+ .++|+|++|+. ++
T Consensus 726 Ge~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~-~~iG~p~~~~~-----~~----------- 788 (1296)
T PRK10252 726 GEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSS-VPIGYPVWNTG-----LR----------- 788 (1296)
T ss_pred cCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccccCCCC-CCcccccCCCE-----EE-----------
Confidence 999999999999988899999999999998766654332111 12223 67888888888 77
Q ss_pred ccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccC----CCCe
Q psy8076 480 VRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTK----FPGY 555 (737)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~----~~g~ 555 (737)
|+|++++++|.|+.|||+|+|+ ++++||+++++.+.+.|..+ ..+|
T Consensus 789 ---------------------------i~d~~~~~~~~g~~Gel~i~g~---~~~~GY~~~~~~t~~~f~~~~~~~~~~~ 838 (1296)
T PRK10252 789 ---------------------------ILDARMRPVPPGVAGDLYLTGI---QLAQGYLGRPDLTASRFIADPFAPGERM 838 (1296)
T ss_pred ---------------------------EECCCCCCCCCCCceEEEeccc---ccchhhCCCcccchhhcccCCCCCCCEE
Confidence 9999999999999999999999 99999999999888877543 3459
Q ss_pred eecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEeccc----CCCCC--cceEEEEEeecCC
Q psy8076 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVP----EPTKG--EIPFCLYIKKRIP 629 (737)
Q Consensus 556 ~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~----~~~~~--~~~~a~v~~~~~~ 629 (737)
|+|||+|++++||+++|+||.||+||++|+||++.|||++|.+||+|.+++|+.+. +...+ ..+++|++...+
T Consensus 839 y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~- 917 (1296)
T PRK10252 839 YRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSG- 917 (1296)
T ss_pred EecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCC-
Confidence 99999999999999999999999999999999999999999999999999877652 11122 368999987654
Q ss_pred CCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCC
Q psy8076 630 LDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRS 709 (737)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~s 709 (737)
. ....++|+++++++||.||+|..++.+++||+|+|
T Consensus 918 -----------~---------------------------------~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~ 953 (1296)
T PRK10252 918 -----------L---------------------------------PLDTSALQAQLRERLPPHMVPVVLLQLDQLPLSAN 953 (1296)
T ss_pred -----------C---------------------------------CCCHHHHHHHHHhhCchhcCCcEEEEecCCCCCCC
Confidence 1 01246799999999999999999999999999999
Q ss_pred chhhHHHHHHH
Q psy8076 710 GKTARKSIVDM 720 (737)
Q Consensus 710 GKi~R~~l~~~ 720 (737)
||+||++|++.
T Consensus 954 GKidr~~L~~~ 964 (1296)
T PRK10252 954 GKLDRKALPLP 964 (1296)
T ss_pred cChhHHhcCCC
Confidence 99999999764
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-71 Score=741.62 Aligned_cols=572 Identities=19% Similarity=0.234 Sum_probs=463.8
Q ss_pred ceeeeeeecccccccccccCC-hhHHHHHHHHHhhChhhHHHHHHhhcccccCccccccCCCCCCCCCCCCCchhHHHHH
Q psy8076 4 FKCDISLDFSGNKINECTSNQ-NDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNA 82 (737)
Q Consensus 4 ~~~~~~~~y~~~~~~~~~~~~-~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~ 82 (737)
..+.++++|++++|++.++++ +++|.++++.++++|+..++++ ..+... ...+++..++.+.. .++.. .+++++
T Consensus 1505 ~~l~l~~~y~~~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~l-~~~~~~-~~~~~~~~~~~~~~-~~~~~--~~~~~~ 1579 (3956)
T PRK12467 1505 EGLQASLTYATDLFEASTIERLAGHWLNLLQGLVADPERRLGEL-DLLDEA-ERRQILEGWNATHT-GYPLA--RLVHQL 1579 (3956)
T ss_pred CeEEEEEEEeCCcCCHHHHHHHHHHHHHHHHHHhhCccCceeec-cccchH-HhhhhHHhhcCCcc-CCCcc--ccHHHH
Confidence 468899999999999999999 5689999999999999988777 222222 22355555554422 22222 258899
Q ss_pred HhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEE
Q psy8076 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHS 162 (737)
Q Consensus 83 l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~v 162 (737)
|+++++++ |+++|+++.+ +.+||+||+++++++|+.|.++|+++|++|++++++++++++++|||+++|++++
T Consensus 1580 ~~~~a~~~-p~~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG~~~v 1652 (3956)
T PRK12467 1580 IEDQAAAT-PEAVALVFGE------QELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYV 1652 (3956)
T ss_pred HHHHHHhC-CCCeEEEeCC------cEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhccCceee
Confidence 99999998 9999999876 8999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHH
Q psy8076 163 VVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDA 242 (737)
Q Consensus 163 pl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~ 242 (737)
|++|.+|.+++.+++++++++++|++...... + ... ....++.++.. . .+.
T Consensus 1653 pldp~~p~~rl~~il~~~~~~~~l~~~~~~~~---------~----~~~--~~~~~~~~~~~-----------~-~~~-- 1703 (3956)
T PRK12467 1653 PLDPEYPRERLAYMIEDSGIELLLTQSHLQAR---------L----PLP--DGLRSLVLDQE-----------D-DWL-- 1703 (3956)
T ss_pred ecCCCCCHHHHHHHHHhCCCCEEEeChhhhhh---------C----ccc--cCCcEEEeccc-----------c-chh--
Confidence 99999999999999999999999998642210 0 000 01122222211 0 000
Q ss_pred HhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEeccccc
Q psy8076 243 LAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGW 322 (737)
Q Consensus 243 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 322 (737)
.............+++++||+||||||| +||||+++|++++..+.+ +...++++.+|++++++|++|
T Consensus 1704 ~~~~~~~~~~~~~~~~~ayiiyTSGSTG------------~PKGV~~th~~l~~~~~~-~~~~~~~~~~d~~l~~~~~~f 1770 (3956)
T PRK12467 1704 EGYSDSNPAVNLAPQNLAYVIYTSGSTG------------RPKGAGNRHGALVNRLCA-TQEAYQLSAADVVLQFTSFAF 1770 (3956)
T ss_pred ccCCCCCCCCCCCCcCcEEEEECCCcCC------------CCCEEEEcCHHHHHHHHH-HHHhcCCCcccEEEEecCccH
Confidence 0001111223457899999999999999 999999999886665554 566789999999999999999
Q ss_pred ccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEee
Q psy8076 323 VVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVA 402 (737)
Q Consensus 323 ~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~g 402 (737)
+++ +++++.+|+.|+++++.+... ..++..+++.|+++++|++.++|++++.|.+... ...++++||.+++|
T Consensus 1771 d~~-~~~~~~~L~~G~~lvi~~~~~--~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-----~~~~~~~lr~v~~g 1842 (3956)
T PRK12467 1771 DVS-VWELFWPLINGARLVIAPPGA--HRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE-----QVEHPLSLRRVVCG 1842 (3956)
T ss_pred HHH-HHHHHHHHhCCCEEEEcChhh--cCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc-----ccccCCCceEEEEc
Confidence 998 567999999999999987533 3689999999999999999999999999987422 22357899999999
Q ss_pred cCCCCHHHHHHHHHhcC-CcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcccccc
Q psy8076 403 GEHCDHETKNWAEKSFN-VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVR 481 (737)
Q Consensus 403 Ge~l~~~~~~~~~~~~~-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~ 481 (737)
||++++++.+.|.+.++ ..++|.||+||+++.++...............++|+|++|+. ++
T Consensus 1843 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~-----~~------------- 1904 (3956)
T PRK12467 1843 GEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLS-----TY------------- 1904 (3956)
T ss_pred cccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCE-----EE-------------
Confidence 99999999999888774 679999999999977765443211111111268999999988 88
Q ss_pred ccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccC-----CCCee
Q psy8076 482 ILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTK-----FPGYY 556 (737)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~-----~~g~~ 556 (737)
|+|++++++|.|++|||+|+|+ ++++||+|+++.|.+.|..+ ..+||
T Consensus 1905 -------------------------vld~~~~~vp~G~~GEl~i~G~---~v~~GYl~~p~~t~~~f~~~p~~~~~~r~y 1956 (3956)
T PRK12467 1905 -------------------------ILDASLNPVPIGVAGELYLGGV---GLARGYLNRPALTAERFVADPFGTVGSRLY 1956 (3956)
T ss_pred -------------------------EECCCCCCCCCCCceEEEeccc---cccccccCChhhhhhhCcCCCCCCCCccce
Confidence 9999999999999999999999 99999999999998887543 23599
Q ss_pred ecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCcc
Q psy8076 557 DTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFS 636 (737)
Q Consensus 557 ~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~ 636 (737)
+|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|.+|+|++.+ ...++.+++||+........
T Consensus 1957 rTGDl~~~~~dG~l~~~GR~D~qVki~G~rIel~eIE~~l~~~p~V~~a~vv~~~-~~~~~~lva~vv~~~~~~~~---- 2031 (3956)
T PRK12467 1957 RTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREAVVIAQD-GANGKQLVAYVVPTDPGLVD---- 2031 (3956)
T ss_pred eccceEEECCCCCEEEecccCceEEeCeEEechHHHHHHHHhCCCcceEEEEEec-CCCCcEEEEEEEecCccccc----
Confidence 9999999999999999999999999999999999999999999999999999986 44667899999876541000
Q ss_pred ccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHH
Q psy8076 637 GLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKS 716 (737)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~ 716 (737)
. ........++|+++++++||.||+|..++++++||+|+|||+||++
T Consensus 2032 ----~-----------------------------~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidr~~ 2078 (3956)
T PRK12467 2032 ----D-----------------------------DEAQVALRAILKNHLKASLPEYMVPAHLVFLARMPLTPNGKLDRKA 2078 (3956)
T ss_pred ----c-----------------------------cccccccHHHHHHHHHhhCchhhCchhhhhhhcCCCCCCCCcchhh
Confidence 0 0011224578999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy8076 717 IVDMA 721 (737)
Q Consensus 717 l~~~~ 721 (737)
|++..
T Consensus 2079 L~~~~ 2083 (3956)
T PRK12467 2079 LPAPD 2083 (3956)
T ss_pred CCCCc
Confidence 98754
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-70 Score=624.28 Aligned_cols=499 Identities=25% Similarity=0.322 Sum_probs=413.7
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++++++ ||++|+++.+ +.+||+||+++++++|++|.+.|+++||+|+++++|++++++++|||+++
T Consensus 50 ~~~~~~~~~a~~~-pd~~Al~~~~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~ 122 (549)
T PRK07788 50 PFAGLVAHAARRA-PDRAALIDER------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKV 122 (549)
T ss_pred hHHHHHHHHHHHC-CCceEEEECC------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhc
Confidence 5788999999988 9999999875 79999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|+++.++.+++.+++++++++++++++.. ...+.......+ .+..++..... . ........
T Consensus 123 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~-~---~~~~~~~~ 188 (549)
T PRK07788 123 GARIILLNTGFSGPQLAEVAAREGVKALVYDDEF---------TDLLSALPPDLG-RLRAWGGNPDD-D---EPSGSTDE 188 (549)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchh---------HHHHHhhccccc-cceEEEEecCc-c---ccCCcCcc
Confidence 9999999999999999999999999999998652 222222211111 11111111111 0 01112334
Q ss_pred cHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEe
Q psy8076 238 LWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317 (737)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~ 317 (737)
.++++...... ...+...+++++++||||||| .||||+++|++++..... +...+++..+|+++..
T Consensus 189 ~~~~~~~~~~~-~~~~~~~~~~~~i~~TSGTTG------------~PKgv~~s~~~~~~~~~~-~~~~~~~~~~d~~~~~ 254 (549)
T PRK07788 189 TLDDLIAGSST-APLPKPPKPGGIVILTSGTTG------------TPKGAPRPEPSPLAPLAG-LLSRVPFRAGETTLLP 254 (549)
T ss_pred cHHHHhcCCCC-CCCCCCCCCCcEEEECCCCCC------------CCCEEeccCccHHHHHHH-HHhhCCCCcCCeEEEc
Confidence 56665543322 222345678999999999999 999999999987766554 4455788899999999
Q ss_pred cccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCcc
Q psy8076 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLR 397 (737)
Q Consensus 318 ~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr 397 (737)
.|++|..|+. .++.++..|+++++.. .+++..+++.++++++|++.++|++++.|.+...... ...++++||
T Consensus 255 ~p~~~~~g~~-~~~~~l~~G~~~v~~~-----~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--~~~~~~~lr 326 (549)
T PRK07788 255 APMFHATGWA-HLTLAMALGSTVVLRR-----RFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVL--AKYDTSSLK 326 (549)
T ss_pred cchHHHHHHH-HHHHHHHhCCEEEECC-----CCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCccccc--CCCCCCcee
Confidence 9999999864 4677899999999874 3789999999999999999999999999987654311 344678999
Q ss_pred EEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcc
Q psy8076 398 YLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRA 477 (737)
Q Consensus 398 ~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~ 477 (737)
.+++||+++++++.+++.+.++..++|.||+||++...+... ......+ +++|+|++++. ++
T Consensus 327 ~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~---~~~~~~~-~~vG~~~~~~~-----~~--------- 388 (549)
T PRK07788 327 IIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATP---EDLAEAP-GTVGRPPKGVT-----VK--------- 388 (549)
T ss_pred EEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccCh---hhhhhcC-CCcccCCCCcE-----EE---------
Confidence 999999999999999999999999999999999985444321 1222334 68899998888 77
Q ss_pred ccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeee
Q psy8076 478 HCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYD 557 (737)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~ 557 (737)
|+|++|++++.|+.|||+|+|+ .++.||++++.. + ..+|||+
T Consensus 389 -----------------------------i~d~~~~~~~~g~~Gel~v~g~---~~~~gY~~~~~~--~----~~~g~~~ 430 (549)
T PRK07788 389 -----------------------------ILDENGNEVPRGVVGRIFVGNG---FPFEGYTDGRDK--Q----IIDGLLS 430 (549)
T ss_pred -----------------------------EECCCcCCCCCCCeEEEEEeCC---CccccccCCCcc--c----ccCCcee
Confidence 9999999999999999999999 899999998765 1 1379999
Q ss_pred cCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccc
Q psy8076 558 TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSG 637 (737)
Q Consensus 558 TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~ 637 (737)
|||+|++|+||+++|.||.||+||++|++|+|.|||++|.+||.|.+++|++++++..++.++++|+++++
T Consensus 431 TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~--------- 501 (549)
T PRK07788 431 SGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPG--------- 501 (549)
T ss_pred cCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCC---------
Confidence 99999999999999999999999999999999999999999999999999999998889999999998764
Q ss_pred cccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHH
Q psy8076 638 LIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSI 717 (737)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l 717 (737)
. ....++|+++++++|+.|++|..++++++||+|++||++|++|
T Consensus 502 ---~---------------------------------~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L 545 (549)
T PRK07788 502 ---A---------------------------------ALDEDAIKDYVRDNLARYKVPRDVVFLDELPRNPTGKVLKREL 545 (549)
T ss_pred ---C---------------------------------CCCHHHHHHHHHHhhhcCCCCcEEEEeCCCCCCCCcCEeHHHh
Confidence 1 0124689999999999999999999999999999999999999
Q ss_pred HHH
Q psy8076 718 VDM 720 (737)
Q Consensus 718 ~~~ 720 (737)
+++
T Consensus 546 ~~~ 548 (549)
T PRK07788 546 REM 548 (549)
T ss_pred hcc
Confidence 864
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-69 Score=623.38 Aligned_cols=528 Identities=23% Similarity=0.297 Sum_probs=425.0
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCC--CCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHH
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSP--VTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATV 155 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~ 155 (737)
+++++|+++++++ |+++|+++... .....+++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+
T Consensus 26 t~~~~l~~~a~~~-p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~~ 104 (632)
T PRK07529 26 STYELLSRAAARH-PDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGE 104 (632)
T ss_pred CHHHHHHHHHHHC-CCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 4789999999988 99999987531 12245899999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEeccccccc--cc--
Q psy8076 156 RLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEA--EL-- 231 (737)
Q Consensus 156 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~--~~-- 231 (737)
++| +++|+++.++++++.+++++++++++++++.... .+....+..+....+ .++.++.++....... .+
T Consensus 105 ~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~ 178 (632)
T PRK07529 105 AAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPG----TDIWQKVAEVLAALP-ELRTVVEVDLARYLPGPKRLAV 178 (632)
T ss_pred HhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCC----chHHHHHHHHHhcCC-cceeEEEecCcccccccccccc
Confidence 999 6799999999999999999999999999875321 123334444444444 5556665543210000 00
Q ss_pred ------CCCCcccHHHHHhhcCC---CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHH
Q psy8076 232 ------TPGYDILWDDALAQRLS---HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTM 302 (737)
Q Consensus 232 ------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~ 302 (737)
.......+.+.+..... .......++++++++||||||| .||||+++|++++.+ .+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG------------~PK~v~~sh~~l~~~-~~~~ 245 (632)
T PRK07529 179 PLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTG------------MPKLAQHTHGNEVAN-AWLG 245 (632)
T ss_pred cccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccC------------cCCEEEEcHHHHHHH-HHHH
Confidence 11123345555443322 1122346799999999999999 999999999886554 4445
Q ss_pred hhhhcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCC-CCChhHHHHHHHhcCCcEEeecHHHHHHHHHc
Q psy8076 303 SVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDR-TPDPSQYYRVIHNHKVNGLFTAPTALRVIRRE 381 (737)
Q Consensus 303 ~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~-~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~ 381 (737)
...+++.++|++++.+|++|..++...++.+|..|+++++.+..... ......+++.++++++|++.++|+++..|.+.
T Consensus 246 ~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 325 (632)
T PRK07529 246 ALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQV 325 (632)
T ss_pred HHhcCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhC
Confidence 56678899999999999999999877789999999999997642110 11246799999999999999999999999876
Q ss_pred CCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCC
Q psy8076 382 DKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYD 461 (737)
Q Consensus 382 ~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~ 461 (737)
.. ...++++||.+++||+++++++.++|.+.++.++++.||+||++..++.... ....++ +++|.|+|++.
T Consensus 326 ~~-----~~~~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~---~~~~~~-~svG~~~p~~~ 396 (632)
T PRK07529 326 PV-----DGHDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPP---DGERRI-GSVGLRLPYQR 396 (632)
T ss_pred cc-----cCCCccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCcccccCCc---cccccC-CCcccccCCce
Confidence 43 2346889999999999999999999999999999999999999866554322 222234 78999999887
Q ss_pred CCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCC---CccCCCcceEEEEecCCCCCcccccc
Q psy8076 462 GKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDG---SECEPHELGRIVVKLPLPPGTMSTLY 538 (737)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g---~~~~~g~~GEL~i~g~~~~~~~~gy~ 538 (737)
++ +.++|++| ++|+.|+.|||+|+|| +++.||+
T Consensus 397 -----v~------------------------------------i~~~d~~g~~~~~~~~g~~Gel~v~gp---~v~~GY~ 432 (632)
T PRK07529 397 -----VR------------------------------------VVILDDAGRYLRDCAVDEVGVLCIAGP---NVFSGYL 432 (632)
T ss_pred -----EE------------------------------------EEEcCCCCcccccCCCCCceEEEEECC---Ccccccc
Confidence 66 11357777 8999999999999999 9999999
Q ss_pred cChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcc
Q psy8076 539 KAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEI 618 (737)
Q Consensus 539 ~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~ 618 (737)
+++. +...++ .+|||+|||+|++|+||+++|.||.||+||++|++|+|.|||++|.+||+|.+|+|++.+++..|+.
T Consensus 433 ~~~~-~~~~~~--~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~ 509 (632)
T PRK07529 433 EAAH-NKGLWL--EDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGEL 509 (632)
T ss_pred CCcc-cccccc--CCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCce
Confidence 8754 444444 3789999999999999999999999999999999999999999999999999999999999988999
Q ss_pred eEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcC-Cceeeee
Q psy8076 619 PFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIG-PIAAFKL 697 (737)
Q Consensus 619 ~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~p~~ 697 (737)
+++||+++++ .. ...++|+++++++++ .+++|+.
T Consensus 510 ~~a~v~l~~~------------~~---------------------------------~~~~~l~~~~~~~l~~~~~~P~~ 544 (632)
T PRK07529 510 PVAYVQLKPG------------AS---------------------------------ATEAELLAFARDHIAERAAVPKH 544 (632)
T ss_pred eEEEEEEcCC------------CC---------------------------------CCHHHHHHHHHHhcchhccCCcE
Confidence 9999998875 11 124578889999987 5799999
Q ss_pred EEEcCCCCCCCCchhhHHHHHHHHcCCCC
Q psy8076 698 STSVTGLPRTRSGKTARKSIVDMARNKPL 726 (737)
Q Consensus 698 ~~~v~~lP~t~sGKi~R~~l~~~~~~~~~ 726 (737)
++++++||+|++||++|+.|++.+..+.+
T Consensus 545 i~~v~~lP~t~~GKi~r~~Lr~~~~~~~~ 573 (632)
T PRK07529 545 VRILDALPKTAVGKIFKPALRRDAIRRVL 573 (632)
T ss_pred EEEecCCCCCCCCcccHHHHHHHHHHHHH
Confidence 99999999999999999999998776543
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-70 Score=743.46 Aligned_cols=561 Identities=18% Similarity=0.229 Sum_probs=458.2
Q ss_pred eeeeeeecccccccccccCC-hhHHHHHHHHHhhChhhHHHHHHhhcccccCccccccCCCCCCCCCCCCCchhHHHHHH
Q psy8076 5 KCDISLDFSGNKINECTSNQ-NDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAI 83 (737)
Q Consensus 5 ~~~~~~~y~~~~~~~~~~~~-~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~l 83 (737)
++.++++|++++|++.++++ +++|..++++++++|+..++++ +.+...+ ..+++..++.+...+ +.. .+++++|
T Consensus 1935 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l-~~l~~~~-~~~l~~~~~~~~~~~-~~~--~~~~~~~ 2009 (5163)
T PRK12316 1935 TLSLQYSYDRGHFDAAAIERLDRHLLHLLEQMAEDAQAALGEL-ALLDAGE-RQRILADWDRTPEAY-PRG--PGVHQRI 2009 (5163)
T ss_pred cEEEEEecChhhCCHHHHHHHHHHHHHHHHHHHhCcccccccc-cCCCHHH-HHHHHHhcCCCCCCC-CCC--CCHHHHH
Confidence 57889999999999999999 6689999999999999988887 3333222 223444444332221 111 2578999
Q ss_pred hhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEe
Q psy8076 84 DRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSV 163 (737)
Q Consensus 84 ~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vp 163 (737)
+++++++ |+++|+++.+ +.+||+||+++++++|+.|.++|+++|++|+|+++|++++++++|||+++|+++||
T Consensus 2010 ~~~a~~~-p~~~A~~~~~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~~vp 2082 (5163)
T PRK12316 2010 AEQAARA-PEAIAVVFGD------QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVP 2082 (5163)
T ss_pred HHHHHhC-CCCeEEEcCC------CeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhceEEee
Confidence 9999998 9999999876 89999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHHH
Q psy8076 164 VFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDAL 243 (737)
Q Consensus 164 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~ 243 (737)
|+|.+|.+++.+++++++++++++++....... ...... ++.+... ....
T Consensus 2083 ld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~--------------~~~~~~-~~~~~~~---------------~~~~ 2132 (5163)
T PRK12316 2083 LDPNYPAERLAYMLEDSGAALLLTQRHLLERLP--------------LPAGVA-RLPLDRD---------------AEWA 2132 (5163)
T ss_pred cCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcc--------------cccccc-eEeccch---------------hhhh
Confidence 999999999999999999999999875321100 000111 1111100 0011
Q ss_pred hhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccc
Q psy8076 244 AQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWV 323 (737)
Q Consensus 244 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 323 (737)
............+++++||+||||||| +||||+++|++++....+ +...++++++|++++++|++|+
T Consensus 2133 ~~~~~~~~~~~~~~~~a~ii~TSGSTG------------~PKgV~~~h~~l~~~~~~-~~~~~~~~~~d~~l~~~~~~fd 2199 (5163)
T PRK12316 2133 DYPDTAPAVQLAGENLAYVIYTSGSTG------------LPKGVAVSHGALVAHCQA-AGERYELSPADCELQFMSFSFD 2199 (5163)
T ss_pred ccCccCCCCCCCCCCeEEEEeCccCCC------------CCCEeEEccHHHHHHHHH-HHHhcCCCCcceEEEecCchHH
Confidence 111111223467899999999999999 999999999887665554 5667899999999999999999
Q ss_pred cchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeec
Q psy8076 324 VGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAG 403 (737)
Q Consensus 324 ~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gG 403 (737)
.+ +++++.+|+.|+++++.+.. ..++..+++.|+++++|+++++|++++.|.+.... ....++||.+++||
T Consensus 2200 ~~-~~~~~~~L~~G~~~~~~~~~---~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-----~~~~~~lr~~~~gG 2270 (5163)
T PRK12316 2200 GA-HEQWFHPLLNGARVLIRDDE---LWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAER-----DGRPPAVRVYCFGG 2270 (5163)
T ss_pred HH-HHHHHHHHhCCCEEEeCCcc---cCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhc-----ccCCcceeEEEEec
Confidence 87 57799999999999776532 36899999999999999999999999999875432 11235899999999
Q ss_pred CCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccc
Q psy8076 404 EHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRI 482 (737)
Q Consensus 404 e~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~ 482 (737)
|++++++.++|.+.+ +..++|.||+||+++.++...............++|+|++|+. ++
T Consensus 2271 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~-----~~-------------- 2331 (5163)
T PRK12316 2271 EAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPCGAAYVPIGRALGNRR-----AY-------------- 2331 (5163)
T ss_pred ccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeecccccccCCCcCCcccccCCCE-----EE--------------
Confidence 999999999998776 4789999999999877665433211111101157889988888 77
Q ss_pred cccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccC-----CCCeee
Q psy8076 483 LPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTK-----FPGYYD 557 (737)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~-----~~g~~~ 557 (737)
|+|+++++||.|++|||+|+|| ++++||+++++.|.+.|..+ ..+|||
T Consensus 2332 ------------------------i~d~~~~~vp~g~~GEl~i~G~---~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yr 2384 (5163)
T PRK12316 2332 ------------------------ILDADLNLLAPGMAGELYLGGE---GLARGYLNRPGLTAERFVPDPFSASGERLYR 2384 (5163)
T ss_pred ------------------------EECCCCCCCCCCCeeEEEecch---hhcccccCChhhhhhhccCCCCCCCCCeeEe
Confidence 9999999999999999999999 99999999999999888643 245999
Q ss_pred cCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccc
Q psy8076 558 TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSG 637 (737)
Q Consensus 558 TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~ 637 (737)
|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|.+++|++.++. .++.++|||++..+
T Consensus 2385 TGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~-~~~~l~a~v~~~~~--------- 2454 (5163)
T PRK12316 2385 TGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQDGA-SGKQLVAYVVPDDA--------- 2454 (5163)
T ss_pred cccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEEEEecC-CCeEEEEEEEecCC---------
Confidence 99999999999999999999999999999999999999999999999999998766 77889999998765
Q ss_pred cccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHH
Q psy8076 638 LIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSI 717 (737)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l 717 (737)
. ....++|+++++++||.||+|..++++++||+|+|||+||++|
T Consensus 2455 ---~---------------------------------~~~~~~l~~~l~~~Lp~~~vP~~~~~l~~lP~t~~GKidR~~L 2498 (5163)
T PRK12316 2455 ---A---------------------------------EDLLAELRAWLAARLPAYMVPAHWVVLERLPLNPNGKLDRKAL 2498 (5163)
T ss_pred ---C---------------------------------ccCHHHHHHHHHhhCchhcCcceEeeecccCCCCCCccCHhhc
Confidence 1 1236789999999999999999999999999999999999999
Q ss_pred HHHH
Q psy8076 718 VDMA 721 (737)
Q Consensus 718 ~~~~ 721 (737)
++..
T Consensus 2499 ~~~~ 2502 (5163)
T PRK12316 2499 PKPD 2502 (5163)
T ss_pred CCCc
Confidence 8754
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-70 Score=739.55 Aligned_cols=558 Identities=19% Similarity=0.258 Sum_probs=458.4
Q ss_pred ceeeeeeecccccccccccCC-hhHHHHHHHHHhhChhhHHHHHHhhcccccCccccccCCCCCCCCCCCCCchhHHHHH
Q psy8076 4 FKCDISLDFSGNKINECTSNQ-NDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNA 82 (737)
Q Consensus 4 ~~~~~~~~y~~~~~~~~~~~~-~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~ 82 (737)
.++.+.++|++++|+++++++ .++|.++++.++++|+..++++ ..+...+ ..+++..++.+...+.. ...++++
T Consensus 442 ~~l~~~~~y~~~lf~~~~i~~l~~~~~~lL~~i~~~p~~~i~~l-~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~ 516 (5163)
T PRK12316 442 GRLHAALTYATDLFEARTVERMARHWQNLLRGMVENPQARVDEL-PMLDAEE-RGQLVEGWNATAAEYPL---QRGVHRL 516 (5163)
T ss_pred CcEEEEEEEchhhCCHHHHHHHHHHHHHHHHHHHhccccccccC-CCCCHHH-HHHHHHHhcCccccCCC---CCCHHHH
Confidence 467888999999999999999 5689999999999999988776 2222211 12333334333222211 1258899
Q ss_pred HhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEE
Q psy8076 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHS 162 (737)
Q Consensus 83 l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~v 162 (737)
|+++++++ |+++|+++.+ +++||+||+++++++|+.|.+.|+++|++|+|+++|++++++++|||+++|++++
T Consensus 517 ~~~~a~~~-p~~~A~~~~~------~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~v 589 (5163)
T PRK12316 517 FEEQVERT-PEAPALAFGE------ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYV 589 (5163)
T ss_pred HHHHHHHC-CCCeEEEeCC------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEe
Confidence 99999998 9999999876 8999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHH
Q psy8076 163 VVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDA 242 (737)
Q Consensus 163 pl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~ 242 (737)
|++|.+|.+++.+++++++++++|++....... .. . ....++.++.. ..+ .
T Consensus 590 pld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~-------------~~-~-~~~~~~~~~~~------------~~~--~ 640 (5163)
T PRK12316 590 PLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKL-------------PL-A-AGVQVLDLDRP------------AAW--L 640 (5163)
T ss_pred ccCccCcHHHHHHHHHhCCCCEEEEChhhhhhC-------------Cc-c-cCceEEEecCc------------chh--h
Confidence 999999999999999999999999986431100 00 0 01122222211 000 0
Q ss_pred HhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEeccccc
Q psy8076 243 LAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGW 322 (737)
Q Consensus 243 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 322 (737)
.............+++++||+||||||| .||||+++|++++....+ +...++++.+|++++.+|++|
T Consensus 641 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG------------~PKgV~~~h~~l~~~~~~-~~~~~~~~~~d~~l~~~p~~f 707 (5163)
T PRK12316 641 EGYSEENPGTELNPENLAYVIYTSGSTG------------KPKGAGNRHRALSNRLCW-MQQAYGLGVGDTVLQKTPFSF 707 (5163)
T ss_pred ccCCCCCCCCCCCCCCeEEEEECCCcCC------------CCCEeeEcCHHHHHHHHH-HHHhcCCCCCCEEEeeCCeeh
Confidence 0001111223457899999999999999 999999999987766655 566789999999999999999
Q ss_pred ccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEee
Q psy8076 323 VVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVA 402 (737)
Q Consensus 323 ~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~g 402 (737)
+++ .++++.+|+.|+++++++... ..++..+++.|+++++|++.++|++++.|.+... ..++++||.+++|
T Consensus 708 d~~-~~~~~~~L~~G~~l~i~~~~~--~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------~~~~~~l~~~~~g 778 (5163)
T PRK12316 708 DVS-VWEFFWPLMSGARLVVAAPGD--HRDPAKLVELINREGVDTLHFVPSMLQAFLQDED------VASCTSLRRIVCS 778 (5163)
T ss_pred HHH-HHHHHHHHhCCCEEEECCccc--cCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc------cccCCCccEEEEe
Confidence 999 466999999999999986533 3789999999999999999999999999986532 2357899999999
Q ss_pred cCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcccccc
Q psy8076 403 GEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVR 481 (737)
Q Consensus 403 Ge~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~ 481 (737)
||++++++.+.|.+.+ +.+++|.||+||+++.++.... ......+ .++|+|++|++ ++
T Consensus 779 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~--~~~~~~~-~~iG~p~~~~~-----~~------------- 837 (5163)
T PRK12316 779 GEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTC--VEEGGDS-VPIGRPIANLA-----CY------------- 837 (5163)
T ss_pred eccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEec--ccccCCC-CCCccccCCCE-----EE-------------
Confidence 9999999999987665 5789999999999966554432 1222233 68999999988 88
Q ss_pred ccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccC----CCCeee
Q psy8076 482 ILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTK----FPGYYD 557 (737)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~----~~g~~~ 557 (737)
|+|++++++|.|+.|||+|+|| ++++||+++++.+.+.|... .++||+
T Consensus 838 -------------------------i~d~~~~~~p~G~~GEl~i~G~---~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~ 889 (5163)
T PRK12316 838 -------------------------ILDANLEPVPVGVLGELYLAGR---GLARGYHGRPGLTAERFVPSPFVAGERMYR 889 (5163)
T ss_pred -------------------------EECCCCCCCCCCCceEEEeccc---ccChhhCCChhhhhhhCCCCCCCCCCeeEe
Confidence 9999999999999999999999 99999999999998887542 356999
Q ss_pred cCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccc
Q psy8076 558 TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSG 637 (737)
Q Consensus 558 TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~ 637 (737)
|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||.|.+|+|++.+ ++.++|||++.++
T Consensus 890 TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~----~~~lva~vv~~~~--------- 956 (5163)
T PRK12316 890 TGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD----GKQLVGYVVLESE--------- 956 (5163)
T ss_pred cCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcC----CCeEEEEEEccCC---------
Confidence 999999999999999999999999999999999999999999999999999985 5689999998764
Q ss_pred cccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHH
Q psy8076 638 LIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSI 717 (737)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l 717 (737)
. ....++|+++++++||.||+|+.++++++||+|+|||+||++|
T Consensus 957 ---~---------------------------------~~~~~~l~~~l~~~Lp~y~vP~~i~~v~~lP~t~~GKidr~~L 1000 (5163)
T PRK12316 957 ---G---------------------------------GDWREALKAHLAASLPEYMVPAQWLALERLPLTPNGKLDRKAL 1000 (5163)
T ss_pred ---C---------------------------------CCCHHHHHHHHHhhCCCccCCCeEEEHhhCCCCCCCChhHHhh
Confidence 1 1125689999999999999999999999999999999999999
Q ss_pred HHHHc
Q psy8076 718 VDMAR 722 (737)
Q Consensus 718 ~~~~~ 722 (737)
++...
T Consensus 1001 ~~~~~ 1005 (5163)
T PRK12316 1001 PAPEA 1005 (5163)
T ss_pred cCccc
Confidence 87643
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-68 Score=610.08 Aligned_cols=511 Identities=24% Similarity=0.316 Sum_probs=423.9
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcC
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 158 (737)
+.++|+++++.+ |+++|+++.+...++++.+||+||+++++++|++|.+.|+++|++|+++++|++++++++|||+++|
T Consensus 26 l~~~l~~~a~~~-p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~~G 104 (547)
T PRK13295 26 INDDLDACVASC-PDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIG 104 (547)
T ss_pred HHHHHHHHHHHC-CCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhcC
Confidence 678898988888 9999999865334456899999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCccc
Q psy8076 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL 238 (737)
Q Consensus 159 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~ 238 (737)
++++|++|.++.+++.+++++++++++++++.... .+....+.+.....+ .+..++++... ....
T Consensus 105 ~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~----------~~~~ 169 (547)
T PRK13295 105 AVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRG----FDHAAMARRLRPELP-ALRHVVVVGGD----------GADS 169 (547)
T ss_pred cEEeccccccCHHHHHHHHHhcCceEEEEeccccC----cchHHHHHHHhhhCC-CcceEEEecCC----------CccC
Confidence 99999999999999999999999999999875321 112222333333333 44555554332 1112
Q ss_pred HHHHHhhc---------CCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCC
Q psy8076 239 WDDALAQR---------LSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMG 309 (737)
Q Consensus 239 ~~~~~~~~---------~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~ 309 (737)
+.+..... .........++++++++||||||| .||||+++|++++..... +...++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PK~v~~s~~~l~~~~~~-~~~~~~~~ 236 (547)
T PRK13295 170 FEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTG------------EPKGVMHTANTLMANIVP-YAERLGLG 236 (547)
T ss_pred HHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCC------------CCCEEEeccHHHHHHHHH-HHHHhCCC
Confidence 32322111 001112346789999999999999 999999999887666554 45668899
Q ss_pred CCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCcccc
Q psy8076 310 QDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGA 389 (737)
Q Consensus 310 ~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~ 389 (737)
++|++++.+|++|..++.+.++.+|..|+++++.+ ..++..+++.++++++|++.++|+++..|...... .
T Consensus 237 ~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~-----~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~----~ 307 (547)
T PRK13295 237 ADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQD-----IWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKE----S 307 (547)
T ss_pred CCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCC-----CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc----c
Confidence 99999999999999998888899999999999876 36899999999999999999999999998876433 3
Q ss_pred CCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeee
Q psy8076 390 QYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVM 469 (737)
Q Consensus 390 ~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~ 469 (737)
..++++||.+++||+++++++.+++.+.++.++++.||+||++...+.... ....... .++|+|++++. ++
T Consensus 308 ~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~--~~~~~~~-~~~G~~~~~~~-----v~- 378 (547)
T PRK13295 308 GRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLD--DPDERAS-TTDGCPLPGVE-----VR- 378 (547)
T ss_pred CCCcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccCC--Ccchhcc-CccccccCCcE-----EE-
Confidence 446789999999999999999999999999999999999999865443221 1111122 57788888877 77
Q ss_pred eccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhc
Q psy8076 470 LNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYF 549 (737)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~ 549 (737)
|+|+++++++.|+.|||+|+|+ +++.||+++++.+...
T Consensus 379 -------------------------------------i~d~~~~~~~~g~~Gel~v~g~---~~~~gY~~~~~~t~~~-- 416 (547)
T PRK13295 379 -------------------------------------VVDADGAPLPAGQIGRLQVRGC---SNFGGYLKRPQLNGTD-- 416 (547)
T ss_pred -------------------------------------EECCCCCCCCCCCCCeEEEEcC---cccccccCCccccccC--
Confidence 9999999999999999999999 9999999999887654
Q ss_pred cCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCC
Q psy8076 550 TKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIP 629 (737)
Q Consensus 550 ~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~ 629 (737)
.+|||+|||+|+++++|++++.||.||+||++|++|+|.|||++|.+|++|.+++|++++++..++.++++|++.+.
T Consensus 417 --~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~- 493 (547)
T PRK13295 417 --ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPG- 493 (547)
T ss_pred --CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCC-
Confidence 37899999999999999999999999999999999999999999999999999999999998888899999998654
Q ss_pred CCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHH-hcCCceeeeeEEEcCCCCCCC
Q psy8076 630 LDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVRE-AIGPIAAFKLSTSVTGLPRTR 708 (737)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~lP~t~ 708 (737)
. ....+++++++++ .++++++|..++++++||+|.
T Consensus 494 -----------~---------------------------------~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~ 529 (547)
T PRK13295 494 -----------Q---------------------------------SLDFEEMVEFLKAQKVAKQYIPERLVVRDALPRTP 529 (547)
T ss_pred -----------C---------------------------------CCCHHHHHHHHHhccCccccCCcEEEEeccCCCCC
Confidence 1 0124578888886 799999999999999999999
Q ss_pred CchhhHHHHHHHHcCCC
Q psy8076 709 SGKTARKSIVDMARNKP 725 (737)
Q Consensus 709 sGKi~R~~l~~~~~~~~ 725 (737)
+||++|++|++++.+++
T Consensus 530 sgK~~r~~L~~~~~~~~ 546 (547)
T PRK13295 530 SGKIQKFRLREMLRGED 546 (547)
T ss_pred CccccHHHHHHHHhcCC
Confidence 99999999999988754
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-69 Score=630.01 Aligned_cols=482 Identities=19% Similarity=0.265 Sum_probs=402.7
Q ss_pred HHHHHhhhhhcc-CCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 79 CYNAIDRHVERG-MAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 79 ~~~~l~~~~~~~-~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
+.++|.+++... +||++|++.. ..+||+||+++++++|++|.+.|+++|++|+|+++|++++++++|||+++
T Consensus 6 ~~~~~~~~a~~~~~pd~~a~~~~-------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~a 78 (705)
T PRK06060 6 LAGLLAEQASEAGWYDRPAFYAA-------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLAR 78 (705)
T ss_pred HHHHHHHHHhhccCCCceEEEec-------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 467778877752 3999999853 47999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|++|.++.+++.+++++++++++|++......... ..++
T Consensus 79 G~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~------------------~~~~------------------ 122 (705)
T PRK06060 79 GVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQP------------------SRVA------------------ 122 (705)
T ss_pred CcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhcc------------------cccc------------------
Confidence 9999999999999999999999999999997642110000 0000
Q ss_pred cHHHHHhh---cCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEE
Q psy8076 238 LWDDALAQ---RLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVW 314 (737)
Q Consensus 238 ~~~~~~~~---~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~ 314 (737)
...+.... ..+....+..+++++|++||||||| .||||+++|++++..........+++..+|++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG------------~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~ 190 (705)
T PRK06060 123 EAAELMSEAARVAPGGYEPMGGDALAYATYTSGTTG------------PPKAAIHRHADPLTFVDAMCRKALRLTPEDTG 190 (705)
T ss_pred hhhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCC------------CCcEEEEccccHHHHHHHHHHHhhCCCCccee
Confidence 00000000 0011122346789999999999999 99999999999777665544456788999999
Q ss_pred EEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCC
Q psy8076 315 WTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTD 394 (737)
Q Consensus 315 l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~ 394 (737)
++.++++|..++...++.+|..|+++++.+. ..++..++..++++++|+++++|+++..+.+... ..+++
T Consensus 191 l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~------~~~~~ 260 (705)
T PRK06060 191 LCSARMYFAYGLGNSVWFPLATGGSAVINSA----PVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS------PDSFR 260 (705)
T ss_pred EEeccchhhcchhHHHHHHHhcCCEEEEeCC----CCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc------ccccc
Confidence 9999999999876778899999999999763 3578889999999999999999999999886532 22578
Q ss_pred CccEEEeecCCCCHHHHHHHHHhcC-CcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccc
Q psy8076 395 SLRYLFVAGEHCDHETKNWAEKSFN-VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWL 473 (737)
Q Consensus 395 ~Lr~i~~gGe~l~~~~~~~~~~~~~-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~ 473 (737)
+||.+++|||++++++.+++.+.++ .+++|.||+||++..+.... .....+ .++|+|++++. ++
T Consensus 261 slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~----~~~~~~-~~iG~p~~~~~-----v~----- 325 (705)
T PRK06060 261 SLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNR----VDEWRL-GTLGRVLPPYE-----IR----- 325 (705)
T ss_pred ceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEecc----CCCCCc-CcccccCCCcE-----EE-----
Confidence 9999999999999999999999885 79999999999986544321 112233 67899999888 77
Q ss_pred cCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCC
Q psy8076 474 DGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFP 553 (737)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~ 553 (737)
|+|++|++++.|+.|||||+|+ +++.|||++++.+. ..+
T Consensus 326 ---------------------------------i~d~~g~~~~~g~~GEl~i~g~---~v~~GY~~~~~~~~-----~~~ 364 (705)
T PRK06060 326 ---------------------------------VVAPDGTTAGPGVEGDLWVRGP---AIAKGYWNRPDSPV-----ANE 364 (705)
T ss_pred ---------------------------------EECCCCCCCCCCCceEEEEccc---hhhhhhhCCCcccc-----cCC
Confidence 9999999999999999999999 99999999998643 237
Q ss_pred CeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcC
Q psy8076 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKM 633 (737)
Q Consensus 554 g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~ 633 (737)
|||+|||+|++++||+++|+||.||+||++|+||+|.|||++|.+||.|.+++|++++++..++.+++|++....
T Consensus 365 ~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~----- 439 (705)
T PRK06060 365 GWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSG----- 439 (705)
T ss_pred CcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccc-----
Confidence 899999999999999999999999999999999999999999999999999999999998888889999987654
Q ss_pred CccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhh
Q psy8076 634 GFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTA 713 (737)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~ 713 (737)
. ........+++++++++||.|++|..|+++++||+|+|||++
T Consensus 440 -------~------------------------------~~~~~~~~~i~~~l~~~L~~~~~P~~i~~v~~iP~t~~GKid 482 (705)
T PRK06060 440 -------A------------------------------TIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLV 482 (705)
T ss_pred -------c------------------------------CcChHHHHHHHHHHHHhCCCCcCCcEEEEeecCCCCcchhhH
Confidence 1 011234568999999999999999999999999999999999
Q ss_pred HHHHHHHHcC
Q psy8076 714 RKSIVDMARN 723 (737)
Q Consensus 714 R~~l~~~~~~ 723 (737)
|++|++.+..
T Consensus 483 r~~L~~~~~~ 492 (705)
T PRK06060 483 RGALRKQSPT 492 (705)
T ss_pred HHHHHhhccc
Confidence 9999987643
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-68 Score=613.86 Aligned_cols=541 Identities=19% Similarity=0.214 Sum_probs=403.6
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
.+.++|+++++++ |+++|+++.+ +.+||+||.++++++|++|.++|+++||+|+|+++|++++++++|||+++
T Consensus 8 ~~~~~~~~~~~~~-p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~ 80 (563)
T PLN02860 8 HICQCLTRLATLR-GNAVVTISGN------RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACA 80 (563)
T ss_pred HHHHHHHHHHHhc-CCceEEecCC------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhc
Confidence 4678889999888 9999998765 88999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHH-HhcCCCCCeEEEEecccccccccCCCCc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEAL-EISSCKPDYCIIFQRRCVEEAELTPGYD 236 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~viv~~~~~~~~~~~~~~~~ 236 (737)
|++++|+++.++.+++.+++++++++++++++.... ...... ..++ .+..+++....... ........
T Consensus 81 Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~---------~~~~~~~~~~~-~~~~~i~~~~~~~~-~~~~~~~~ 149 (563)
T PLN02860 81 GGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSS---------WYEELQNDRLP-SLMWQVFLESPSSS-VFIFLNSF 149 (563)
T ss_pred cEEEEeCCcccCHHHHHHHHHhcCceEEEEecccch---------HHHHHhhccCC-ceeEEEEecCcccc-cccchhhc
Confidence 999999999999999999999999999999865311 111111 1122 22333333221000 00000000
Q ss_pred ccHHHHHhhc--CCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEE
Q psy8076 237 ILWDDALAQR--LSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVW 314 (737)
Q Consensus 237 ~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~ 314 (737)
+.+.+..... .........++++++++||||||| .||||+++|++++.+... ....++++++|++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PKgV~~s~~~~~~~~~~-~~~~~~~~~~d~~ 216 (563)
T PLN02860 150 LTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTG------------RPKGVTISHSALIVQSLA-KIAIVGYGEDDVY 216 (563)
T ss_pred cccchhccCccccccccCCCCCCCeEEEEecCCCCC------------CCceEEeehHHHHHHHHH-HHhhcCCCCCCEE
Confidence 1111111110 000112346789999999999999 999999999887655443 3445788999999
Q ss_pred EEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCC
Q psy8076 315 WTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTD 394 (737)
Q Consensus 315 l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~ 394 (737)
+..+|++|+.++. .++.+|..|+++++.+ .+++..+++.|+++++|++.++|+++..|.+...... ....++
T Consensus 217 l~~~pl~h~~g~~-~~~~~l~~G~~~v~~~-----~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--~~~~~~ 288 (563)
T PLN02860 217 LHTAPLCHIGGLS-SALAMLMVGACHVLLP-----KFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSM--TWKVFP 288 (563)
T ss_pred EEecCchhhccHH-HHHHHHHcCceEEecC-----CCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhh--cccccc
Confidence 9999999999965 4789999999999875 3689999999999999999999999999987543211 234578
Q ss_pred CccEEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccc
Q psy8076 395 SLRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWL 473 (737)
Q Consensus 395 ~Lr~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~ 473 (737)
+||.+++||+++++++.++|.+.+ +.++++.||+||+++.++............. ... .++. .
T Consensus 289 ~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~-~~~-~~~~---------~----- 352 (563)
T PLN02860 289 SVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPK-QTL-QTVN---------Q----- 352 (563)
T ss_pred ceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccch-hhh-hhhc---------c-----
Confidence 999999999999999999999988 6899999999999865554322110000000 000 0000 0
Q ss_pred cCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCC
Q psy8076 474 DGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFP 553 (737)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~ 553 (737)
..............|.+.++++++|+|++ +|+.|||+|+|| +++.|||++++.+.+.+.. +
T Consensus 353 ---------~~~~~~~~~~~~~vG~p~~~~~v~i~~~~-----~g~~Gel~v~g~---~~~~GY~~~~~~t~~~~~~--~ 413 (563)
T PLN02860 353 ---------TKSSSVHQPQGVCVGKPAPHVELKIGLDE-----SSRVGRILTRGP---HVMLGYWGQNSETASVLSN--D 413 (563)
T ss_pred ---------cccccccccCCcccCCccCCcEEEEecCC-----CCceeEEEEecC---cccccccCCccccchhccC--C
Confidence 00000000011123555555556699876 689999999999 9999999999988776533 7
Q ss_pred CeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcC
Q psy8076 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKM 633 (737)
Q Consensus 554 g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~ 633 (737)
|||+|||+|++|+||+++|+||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++.++++|+++++.. +
T Consensus 414 g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~--~ 491 (563)
T PLN02860 414 GWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWI--W 491 (563)
T ss_pred CeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCccc--c
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999876410 0
Q ss_pred CccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHH-hcCCceeeeeEEEc-CCCCCCCCch
Q psy8076 634 GFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVRE-AIGPIAAFKLSTSV-TGLPRTRSGK 711 (737)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v-~~lP~t~sGK 711 (737)
.... ... .........++|++++++ .|+.|++|+.++++ ++||+|++||
T Consensus 492 ~~~~---------------------------~~~--~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~lP~t~~GK 542 (563)
T PLN02860 492 SDNE---------------------------KEN--AKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGK 542 (563)
T ss_pred cccc---------------------------chh--hcccccccHHHHHHHHhhCcccccccceEEEEEecCCCCCcccc
Confidence 0000 000 000011235678999987 59999999998765 7799999999
Q ss_pred hhHHHHHHHHcC
Q psy8076 712 TARKSIVDMARN 723 (737)
Q Consensus 712 i~R~~l~~~~~~ 723 (737)
++|++|++++.+
T Consensus 543 i~r~~L~~~~~~ 554 (563)
T PLN02860 543 IRRDEVRREVLS 554 (563)
T ss_pred hhHHHHHHHHHH
Confidence 999999998754
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-69 Score=537.86 Aligned_cols=507 Identities=23% Similarity=0.345 Sum_probs=437.3
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|.++++++ ||++|+++.+ +.+||+||+++++++|..|+++|+++||+|.+.+||..++++.+||++++
T Consensus 29 ~l~d~L~~~A~~~-pdriAv~d~~------~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrl 101 (542)
T COG1021 29 TLTDILTDHAARY-PDRIAVIDGE------RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRL 101 (542)
T ss_pred cHHHHHHHHHhhc-CCceEEecCc------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHc
Confidence 3678999999999 9999999987 88999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|+++|.--|..-..+|....+.+.++.+|.++.. ..+++.....+.....+ .++++++..+... ..
T Consensus 102 Gv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~----~gFd~~~~ar~~~a~~~-tlr~v~v~ge~~~---------~~ 167 (542)
T COG1021 102 GVAPVLALPSHRASELGAFASQIEAALLIVARQH----SGFDYRPFARELVAKHP-TLRHVIVAGEAEH---------PS 167 (542)
T ss_pred CcchhhccchhhHHHHHHHHHhhcchheeechhh----cccCcHHHHHHHHhhCC-cceEEEEccCCCC---------cc
Confidence 9999999899999999999999999999998653 34567777777777777 8888888744311 11
Q ss_pred cHHHHHhhcCC--CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEE
Q psy8076 238 LWDDALAQRLS--HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWW 315 (737)
Q Consensus 238 ~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l 315 (737)
.....+..... .+..+.+++++||+..+.|||| .||-|..+|..+..+... -...++++++++++
T Consensus 168 ~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTG------------tPKLIPRtH~DY~Ysv~a-SaEiC~~~~~tvyL 234 (542)
T COG1021 168 VLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTG------------TPKLIPRTHNDYYYSVRA-SAEICGFDQQTVYL 234 (542)
T ss_pred hhhhhhhCccccCCcCCCCCCCceEEEEecCCCCC------------CCccccccccceeeeeee-hhhhhCcCccceEE
Confidence 11122222211 3456678889999999999999 999999999887766655 45669999999999
Q ss_pred Eecccccccchh-hhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCC
Q psy8076 316 TASDMGWVVGHS-YICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTD 394 (737)
Q Consensus 316 ~~~~~~~~~g~~-~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~ 394 (737)
+.+|..|.+.+. -++++.+..|+++|+.+. ++|+....+|++|+||+..++|.+...+++.... ...+++
T Consensus 235 ~~LP~AHNfplssPG~LGv~~agG~VVla~~-----psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~----~~~~Ls 305 (542)
T COG1021 235 CALPAAHNFPLSSPGALGVFLAGGTVVLAPD-----PSPELCFPLIERHGVTVTALVPPLASLWLQAAEW----ERADLS 305 (542)
T ss_pred EecccccCCCCCCcchhheeeeccEEEECCC-----CCHHHHHHHHHHhccceEEeccHHHHHHHHhhhc----ccCCch
Confidence 999999877653 367899999999999874 7899999999999999999999999999988766 667899
Q ss_pred CccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeecccc
Q psy8076 395 SLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLD 474 (737)
Q Consensus 395 ~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~ 474 (737)
|||.+-.||..+++++.+++...+|+.+-+.|||.|.-...+- + .+.+..-..+-|+|+.-.+
T Consensus 306 SLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGLvnyTR--L--DDp~E~i~~TQGrPlsP~D------------- 368 (542)
T COG1021 306 SLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTR--L--DDPPEIIIHTQGRPLSPDD------------- 368 (542)
T ss_pred heeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhhhcccc--c--CCchHheeecCCCcCCCcc-------------
Confidence 9999999999999999999999999999999999997543332 2 2233333367888874333
Q ss_pred CccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCC
Q psy8076 475 GRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPG 554 (737)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g 554 (737)
+++|+|++|+++++|++|+|..+|| ...+|||+.++-+.+.|-. +|
T Consensus 369 -----------------------------EvrvvD~dg~pv~pGE~G~LltRGP---YTirGYyrap~HNa~aF~a--~G 414 (542)
T COG1021 369 -----------------------------EVRVVDADGNPVAPGEVGELLTRGP---YTIRGYYRAPEHNARAFDA--DG 414 (542)
T ss_pred -----------------------------eeEEecCCCCCCCCCCcceeeecCC---eeeeeeccCchhhhhccCc--CC
Confidence 3449999999999999999999999 8999999999999888744 89
Q ss_pred eeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCC
Q psy8076 555 YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMG 634 (737)
Q Consensus 555 ~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~ 634 (737)
||+|||++++|+||++.+.||.+|||+.+|++|..+|||+.|++||.|.+|++|+.+|+..||+.+|||+.++..
T Consensus 415 FYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~----- 489 (542)
T COG1021 415 FYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPP----- 489 (542)
T ss_pred ceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998861
Q ss_pred ccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHH-hcCCceeeeeEEEcCCCCCCCCchhh
Q psy8076 635 FSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVRE-AIGPIAAFKLSTSVTGLPRTRSGKTA 713 (737)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~lP~t~sGKi~ 713 (737)
....+|+++|.+ -+..|++|.++.+++.||+|+-||||
T Consensus 490 -----------------------------------------~~~~qlr~~L~~~GlAa~K~PDrie~v~~~P~T~VGKId 528 (542)
T COG1021 490 -----------------------------------------LRAAQLRRFLRERGLAAFKLPDRIEFVDSLPLTAVGKID 528 (542)
T ss_pred -----------------------------------------CCHHHHHHHHHHcchhhhcCCcceeecccCCCccccccc
Confidence 125678888887 68899999999999999999999999
Q ss_pred HHHHHHHHcCC
Q psy8076 714 RKSIVDMARNK 724 (737)
Q Consensus 714 R~~l~~~~~~~ 724 (737)
+++|++++...
T Consensus 529 Kk~Lr~~l~~~ 539 (542)
T COG1021 529 KKALRRRLASR 539 (542)
T ss_pred HHHHHHHhhhh
Confidence 99999987643
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-68 Score=609.88 Aligned_cols=496 Identities=18% Similarity=0.214 Sum_probs=393.8
Q ss_pred hHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHH
Q psy8076 77 NACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVR 156 (737)
Q Consensus 77 n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~ 156 (737)
+.+.+.|.++++++ |+++|+.+.. .+++||+||.++++++|+.|.+. +||+|+|+++|++++++++|||++
T Consensus 19 ~~~~~~~~~~~~~~-p~~~a~~~~~-----~~~~Ty~el~~~~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~lA~~~ 89 (539)
T PRK06334 19 KTVLESFLKLCSEM-TTATVCWDEQ-----LGKLSYNQVRKAVIALATKVSKY---PDQHIGIMMPASAGAYIAYFATLL 89 (539)
T ss_pred CcHHHHHHHHHHhC-CCceEEEeCC-----CCcccHHHHHHHHHHHHHHHhhc---cCCeEEEEcCCchHHHHHHHHHHh
Confidence 35778888999988 9999998754 36899999999999999999873 899999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCc
Q psy8076 157 LGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYD 236 (737)
Q Consensus 157 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~ 236 (737)
+|++++|+++.++.+++.++++++++++++++... ...+.+...........++.+... .. .
T Consensus 90 ~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~~~~~~~i~~~~~-~~--------~ 151 (539)
T PRK06334 90 SGKIPVMINWSQGLREVTACANLVGVTHVLTSKQL---------MQHLAQTHGEDAEYPFSLIYMEEV-RK--------E 151 (539)
T ss_pred cCCeeEecCcccchHHHHHHHHHcCCCEEEehHHH---------HHHHhhhhhccccccccEEEEehh-hh--------h
Confidence 99999999999999999999999999999997542 122222111100011233333211 00 0
Q ss_pred ccHHHHHh------hcC-----CCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhh
Q psy8076 237 ILWDDALA------QRL-----SHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVI 305 (737)
Q Consensus 237 ~~~~~~~~------~~~-----~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~ 305 (737)
..+.+... ... ........++++++++||||||| .||||+++|++++.+... ....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~th~~l~~~~~~-~~~~ 218 (539)
T PRK06334 152 LSFWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEK------------LPKGVPLTHANLLANQRA-CLKF 218 (539)
T ss_pred ccHHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCC------------CCCEEEEcHHHHHHHHHH-HHHh
Confidence 00001000 000 00112356799999999999999 999999999887665544 4456
Q ss_pred hcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCC
Q psy8076 306 YNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDS 385 (737)
Q Consensus 306 ~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~ 385 (737)
++++.+|++++++|++|.+++...++.++..|+++++... ..++..+++.|+++++|++.++|++++.|.+....
T Consensus 219 ~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~- 293 (539)
T PRK06334 219 FSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYN----PLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKK- 293 (539)
T ss_pred cCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecC----CCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhh-
Confidence 7889999999999999999987667889999999988653 36899999999999999999999999999876432
Q ss_pred ccccCCCCCCccEEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCc
Q psy8076 386 TLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKY 464 (737)
Q Consensus 386 ~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~ 464 (737)
...++++||.+++||+++++++.+++.+.+ +..+++.||+||++..++.... .....+ .++|+|++|++
T Consensus 294 ---~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~---~~~~~~-~~vG~p~~g~~--- 363 (539)
T PRK06334 294 ---QESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTV---NSPKHE-SCVGMPIRGMD--- 363 (539)
T ss_pred ---cccccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccC---CCCCCC-CcCceecCCCE---
Confidence 344678999999999999999999999988 5789999999999876654322 112223 67889998888
Q ss_pred ceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcC-CCCccCCCcceEEEEecCCCCCcccccccChhh
Q psy8076 465 VNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRN-DGSECEPHELGRIVVKLPLPPGTMSTLYKAPQR 543 (737)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~-~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~ 543 (737)
++ |+|+ ++.++++|+.|||+|+|+ +++.|||++++.
T Consensus 364 --v~--------------------------------------i~d~~~~~~~~~g~~Gel~v~g~---~~~~GY~~~~~~ 400 (539)
T PRK06334 364 --VL--------------------------------------IVSEETKVPVSSGETGLVLTRGT---SLFSGYLGEDFG 400 (539)
T ss_pred --EE--------------------------------------EEcCCCCccCCCCceEEEEEecC---cccccccCCccc
Confidence 77 9985 588999999999999999 999999999875
Q ss_pred hHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcce------eEEecccCCCCCc
Q psy8076 544 FMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGD------TAVIGVPEPTKGE 617 (737)
Q Consensus 544 ~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~------a~vv~~~~~~~~~ 617 (737)
+... ..+.+|||+|||+|++|++|+++|.||.||+||++|++|+|.|||++|.+||+|.+ ++|++++++. .
T Consensus 401 ~~~~-~~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~--~ 477 (539)
T PRK06334 401 QGFV-ELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEK--V 477 (539)
T ss_pred ccce-eeCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCc--e
Confidence 4321 12346799999999999999999999999999999999999999999999999987 7888876432 2
Q ss_pred ceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHh-cCCceeee
Q psy8076 618 IPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREA-IGPIAAFK 696 (737)
Q Consensus 618 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~ 696 (737)
.++++++.... .++++++++++ ++.|+.|+
T Consensus 478 ~~~~~~~~~~~-------------------------------------------------~~~~~~~l~~~~~~~~~~P~ 508 (539)
T PRK06334 478 RLCLFTTFPTS-------------------------------------------------ISEVNDILKNSKTSSILKIS 508 (539)
T ss_pred EEEEEEeccCC-------------------------------------------------hHHHHHHHHhcCCcccccch
Confidence 34444442211 35688888886 78999999
Q ss_pred eEEEcCCCCCCCCchhhHHHHHHHHc
Q psy8076 697 LSTSVTGLPRTRSGKTARKSIVDMAR 722 (737)
Q Consensus 697 ~~~~v~~lP~t~sGKi~R~~l~~~~~ 722 (737)
.++++++||+|++||++|++|+++..
T Consensus 509 ~i~~v~~lP~t~~GKi~r~~L~~~~~ 534 (539)
T PRK06334 509 YHHQVESIPMLGTGKPDYCSLNALAK 534 (539)
T ss_pred heeeecccccccCCcccHHHHHHHHH
Confidence 99999999999999999999998754
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-68 Score=620.60 Aligned_cols=536 Identities=17% Similarity=0.148 Sum_probs=407.9
Q ss_pred hHHHHHHhhhhhccCCCceEEEEe---CCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHH
Q psy8076 77 NACYNAIDRHVERGMAKKVALIHD---SPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153 (737)
Q Consensus 77 n~~~~~l~~~~~~~~pd~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA 153 (737)
.++.++|+++++++ |+++|+.+. +...+.++.+||+||.++++++|++|.++|+++||+|+|+++|++||++++||
T Consensus 44 ~tl~~~l~~~a~~~-p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA 122 (651)
T PLN02736 44 GTLHDNFVYAVETF-RDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHA 122 (651)
T ss_pred CCHHHHHHHHHHhC-CCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 35789999999988 999999642 21223467899999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEeccccccccc--
Q psy8076 154 TVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAEL-- 231 (737)
Q Consensus 154 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~-- 231 (737)
|+++|+++||+++.++.+++.+++++++++++|+++. ....+......++ .++.++++..........
T Consensus 123 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~---------~~~~~~~~~~~~~-~l~~ii~~~~~~~~~~~~~~ 192 (651)
T PLN02736 123 CSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQ---------TLNTLLSCLSEIP-SVRLIVVVGGADEPLPSLPS 192 (651)
T ss_pred HHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHH---------HHHHHHHHhhcCC-CceEEEEECCCchhhhhhhc
Confidence 9999999999999999999999999999999999764 2233444444444 455666553211000000
Q ss_pred -CCCCcccHHHHHhhcCC--CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcC
Q psy8076 232 -TPGYDILWDDALAQRLS--HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNM 308 (737)
Q Consensus 232 -~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~ 308 (737)
.......|+++...... ....+..++++++|+||||||| .||||+++|++++.+... ....+++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG------------~PKGV~lsh~~l~~~~~~-~~~~~~~ 259 (651)
T PLN02736 193 GTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTG------------TPKGVVLTHGNLIANVAG-SSLSTKF 259 (651)
T ss_pred cCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCC------------CCcEEEEecHHHHHHHHH-HHhccCC
Confidence 01112456666543321 1233457899999999999999 999999999987665554 4456788
Q ss_pred CCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCC---
Q psy8076 309 GQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDS--- 385 (737)
Q Consensus 309 ~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~--- 385 (737)
.++|++++++|++|++++. .++.+|..|+++++.+ .++..+++.|+++++|+++++|++++.+.+.....
T Consensus 260 ~~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~i~~~~------~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~ 332 (651)
T PLN02736 260 YPSDVHISYLPLAHIYERV-NQIVMLHYGVAVGFYQ------GDNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKE 332 (651)
T ss_pred CCCCEEEEeCCHHHHHHHH-HHHHHHHcCCEEEEeC------CCHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhc
Confidence 9999999999999999975 4788899999999876 36788999999999999999999998876531000
Q ss_pred ------------------------cccc----------CCCC-CCccEEEeecCCCCHHHHHHHHHhcCCcccccccccc
Q psy8076 386 ------------------------TLGA----------QYST-DSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTE 430 (737)
Q Consensus 386 ------------------------~~~~----------~~~l-~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE 430 (737)
.... +..+ ++||.+++||+++++++.+++.+.+|..+++.||+||
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~YG~TE 412 (651)
T PLN02736 333 SGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTE 412 (651)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEEechHH
Confidence 0000 0011 4899999999999999999999889999999999999
Q ss_pred cccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcC
Q psy8076 431 TGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRN 510 (737)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~ 510 (737)
+++.++.... ...++ +++|+|+||++ ++ |+|.
T Consensus 413 ~~~~~~~~~~----~~~~~-~~vG~p~pg~~-----v~--------------------------------------i~d~ 444 (651)
T PLN02736 413 TSCVISGMDE----GDNLS-GHVGSPNPACE-----VK--------------------------------------LVDV 444 (651)
T ss_pred hchheeccCC----CCCCC-CccCCccCceE-----EE--------------------------------------EEEc
Confidence 9866554321 22334 78899999888 77 8883
Q ss_pred -CCC---ccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEee-CcE
Q psy8076 511 -DGS---ECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINV-AGH 585 (737)
Q Consensus 511 -~g~---~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~-~G~ 585 (737)
++. ...++..|||+|+|| +++.|||++++.+.+.|. .+|||+|||+|++|+||+|+|+||.||+||+ +|+
T Consensus 445 ~~~~~~~~~~~~~~GEl~vrgp---~v~~GY~~~~~~t~~~~~--~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~ 519 (651)
T PLN02736 445 PEMNYTSEDQPYPRGEICVRGP---IIFKGYYKDEVQTREVID--EDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGE 519 (651)
T ss_pred cccCcccCCCCCCCceEEecCC---ccccccccCHHHHHhhhc--cCCCeeccceEEEcCCCcEEEEEechhheEcCCCc
Confidence 322 223345799999999 999999999999988763 3799999999999999999999999999998 599
Q ss_pred EechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCC
Q psy8076 586 RLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPI 665 (737)
Q Consensus 586 rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (737)
+|+|.|||++|.+||.|.+|+|++. ..++.++|+|+++.+.+.++..... .+ ...
T Consensus 520 ~V~p~eIE~~l~~~p~V~~a~V~g~---~~~~~~~A~vv~~~~~~~~~~~~~~--~~--------------------~~~ 574 (651)
T PLN02736 520 YIAPEKIENVYAKCKFVAQCFVYGD---SLNSSLVAVVVVDPEVLKAWAASEG--IK--------------------YED 574 (651)
T ss_pred EechHHHHHHHhcCCCeeEEEEEec---CCCceeEEEEEeCHHHHHHHHHHcC--CC--------------------ccC
Confidence 9999999999999999999999983 3467899999987642211100000 00 000
Q ss_pred cccccCCChHHHHHHHHHHHHH-----hcCCceeeeeEEEcCCCC------CCCCchhhHHHHHHHHcC
Q psy8076 666 SSIYCTRSDEEIGKELKELVRE-----AIGPIAAFKLSTSVTGLP------RTRSGKTARKSIVDMARN 723 (737)
Q Consensus 666 ~~~~~~~~~~~~~~~l~~~l~~-----~l~~~~~p~~~~~v~~lP------~t~sGKi~R~~l~~~~~~ 723 (737)
...++ ....+.+.|.+.+++ .|+.|++|++|.++++.| +|++||++|+.|++.|.+
T Consensus 575 ~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~ 641 (651)
T PLN02736 575 LKQLC--NDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAK 641 (651)
T ss_pred HHHHh--cCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHH
Confidence 00011 112233333333332 699999999999999886 799999999999998854
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-67 Score=602.85 Aligned_cols=512 Identities=24% Similarity=0.319 Sum_probs=423.3
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEecCCHHHHHHHHHHHH
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAI-GVSAGDRVLIYMPLIPEAIVSMLATVR 156 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~-Gv~~Gd~V~i~~~~~~e~vva~lA~~~ 156 (737)
++.++|.++++.+ |+++|+++.+ +++||+||.+++.++|+.|.++ |+++|++|+++++|++++++++|||++
T Consensus 11 tl~~~l~~~a~~~-~~~~a~~~~~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 83 (546)
T PRK08314 11 SLFHNLEVSARRY-PDKTAIVFYG------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILR 83 (546)
T ss_pred CHHHHHHHHHHHc-CCCcceeecC------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence 4778888899888 9999999886 7999999999999999999999 999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEeccccc-c-------
Q psy8076 157 LGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE-E------- 228 (737)
Q Consensus 157 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~-~------- 228 (737)
+|++++|++|..+.+++..++++++++++++++... ..+......+ ..+.+++....... .
T Consensus 84 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 152 (546)
T PRK08314 84 ANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELA---------PKVAPAVGNL--RLRHVIVAQYSDYLPAEPEIAVP 152 (546)
T ss_pred cCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchh---------hhHHHHhhcc--CcceEEEecchhhcccccccCcc
Confidence 999999999999999999999999999999987532 2222222111 22333332211000 0
Q ss_pred ---------cccCCCCcccHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHH
Q psy8076 229 ---------AELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLA 299 (737)
Q Consensus 229 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~ 299 (737)
..........|.+..............++++++++||||||| .||||+++|++++.+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG------------~PK~v~~s~~~l~~~~~ 220 (546)
T PRK08314 153 AWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTG------------VPKGCMHTHRTVMANAV 220 (546)
T ss_pred cccccccccccccccccccHHHHhcccCCCCCCCCCCCCeEEEEeCCCCCC------------CCcEEEEecHHHHHHHH
Confidence 000111233455554432222334567899999999999999 99999999998777665
Q ss_pred HHHhhhhcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHH
Q psy8076 300 WTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIR 379 (737)
Q Consensus 300 ~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~ 379 (737)
. ....+++..+|++++.+|++|..|+...++.+|..|+++++.+. .++..+++.++++++|++.++|++++.+.
T Consensus 221 ~-~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~-----~~~~~~~~~i~~~~~t~~~~~p~~~~~ll 294 (546)
T PRK08314 221 G-SVLWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPR-----WDREAAARLIERYRVTHWTNIPTMVVDFL 294 (546)
T ss_pred H-HHHhhCCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCC-----CCHHHHHHHHHHhcCceecccHHHHHHHH
Confidence 4 44567889999999999999999987878899999999999863 68899999999999999999999999888
Q ss_pred HcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCC
Q psy8076 380 REDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPG 459 (737)
Q Consensus 380 ~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g 459 (737)
..... ...+++++|.+++||+++++++.+++.+.++.++++.||+||++...+.... ..... .++|.|++|
T Consensus 295 ~~~~~----~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~----~~~~~-~~~G~~~~g 365 (546)
T PRK08314 295 ASPGL----AERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPP----DRPKL-QCLGIPTFG 365 (546)
T ss_pred hCCCc----cccCchhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccceecCCC----cCCCC-CccCcccCC
Confidence 65432 3446789999999999999999999999999999999999999865544321 11223 678888888
Q ss_pred CCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccc
Q psy8076 460 YDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLY 538 (737)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~ 538 (737)
+. ++ |+| +++++++.|+.|||+|+|+ +++.||+
T Consensus 366 ~~-----~~--------------------------------------i~d~~~~~~~~~g~~Gel~v~g~---~~~~gY~ 399 (546)
T PRK08314 366 VD-----AR--------------------------------------VIDPETLEELPPGEVGEIVVHGP---QVFKGYW 399 (546)
T ss_pred eE-----EE--------------------------------------EEeCCCCcCCCCCCceEEEEECC---chhcccc
Confidence 87 77 999 4699999999999999999 9999999
Q ss_pred cChhhhHHhhcc-CCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCc
Q psy8076 539 KAPQRFMKIYFT-KFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617 (737)
Q Consensus 539 ~~~~~~~~~~~~-~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~ 617 (737)
++++.+.+.|.. +..+||+|||+|+++++|++++.||.||+||++|++|+|.|||++|.++|+|.+++|++.++...++
T Consensus 400 ~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~ 479 (546)
T PRK08314 400 NRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGE 479 (546)
T ss_pred CChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccCc
Confidence 999888777653 2235999999999999999999999999999999999999999999999999999999999988889
Q ss_pred ceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeee
Q psy8076 618 IPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKL 697 (737)
Q Consensus 618 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 697 (737)
.++++++++++ . ......++++++++++|++|++|..
T Consensus 480 ~~~a~v~~~~~------------~-------------------------------~~~~~~~~l~~~~~~~l~~~~~P~~ 516 (546)
T PRK08314 480 TVKAVVVLRPE------------A-------------------------------RGKTTEEEIIAWAREHMAAYKYPRI 516 (546)
T ss_pred eeEEEEEECCC------------C-------------------------------CCCCCHHHHHHHHHHhcccCCCCcE
Confidence 99999998765 1 0111246899999999999999999
Q ss_pred EEEcCCCCCCCCchhhHHHHHHHHcC
Q psy8076 698 STSVTGLPRTRSGKTARKSIVDMARN 723 (737)
Q Consensus 698 ~~~v~~lP~t~sGKi~R~~l~~~~~~ 723 (737)
++++++||+|.+||++|+.|++...+
T Consensus 517 ~~~v~~iP~t~~GKv~r~~L~~~~~~ 542 (546)
T PRK08314 517 VEFVDSLPKSGSGKILWRQLQEQEKA 542 (546)
T ss_pred EEEecCCCCCCccceeHHHHHHHHhh
Confidence 99999999999999999999886544
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-67 Score=597.08 Aligned_cols=492 Identities=23% Similarity=0.280 Sum_probs=406.8
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcC
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 158 (737)
+.++|.++++++ ||++|+++.+ +.+||+||+++++++|++|.++|+++|++|+++++|++++++++|||+++|
T Consensus 45 ~~~~l~~~a~~~-p~~~a~~~~~------~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G 117 (537)
T PRK13382 45 PTSGFAIAAQRC-PDRPGLIDEL------GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIG 117 (537)
T ss_pred HHHHHHHHHHhC-CCCeEEEeCC------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcC
Confidence 678899999998 9999999765 799999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCccc
Q psy8076 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL 238 (737)
Q Consensus 159 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~ 238 (737)
++++|+++.++.+++.+++++++++++|++... ...+.......+ ....++.+... .....
T Consensus 118 ~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~---------~~~~~ 178 (537)
T PRK13382 118 ADILLLNTSFAGPALAEVVTREGVDTVIYDEEF---------SATVDRALADCP-QATRIVAWTDE---------DHDLT 178 (537)
T ss_pred cEEEecCcccCHHHHHHHHHhcCCCEEEEchhh---------HHHHHHHHhhcc-ccceEEEecCC---------ccccc
Confidence 999999999999999999999999999998642 223333322222 22223322211 01233
Q ss_pred HHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEec
Q psy8076 239 WDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTAS 318 (737)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~ 318 (737)
+..+....... .....+++.++++||||||| .||||+++|++.+..... +...+.+..+++++...
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~~~il~TSGTTG------------~PKgv~~s~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 244 (537)
T PRK13382 179 VEVLIAAHAGQ-RPEPTGRKGRVILLTSGTTG------------TPKGARRSGPGGIGTLKA-ILDRTPWRAEEPTVIVA 244 (537)
T ss_pred HHHHhhccCcC-CCCCCCCCCeEEEECCCCCC------------CCCEEEeccchHHHHHHH-HHHhhCCCCCCeEEEec
Confidence 44443322211 12235688999999999999 999999999776655444 44456788999999999
Q ss_pred ccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccE
Q psy8076 319 DMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRY 398 (737)
Q Consensus 319 ~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~ 398 (737)
|++|..++ ..++.++..|+++++.. .+++..+++.|+++++|++.++|++++.|.+...... ...++++||.
T Consensus 245 p~~~~~g~-~~~~~~l~~g~~~~~~~-----~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--~~~~~~~lr~ 316 (537)
T PRK13382 245 PMFHAWGF-SQLVLAASLACTIVTRR-----RFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVR--NRYSGRSLRF 316 (537)
T ss_pred ChHhhhHH-HHHHHHHhcCcEEEECC-----CcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhc--ccCCccceeE
Confidence 99999986 45788999999998865 3789999999999999999999999999987543211 2345678999
Q ss_pred EEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccc
Q psy8076 399 LFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAH 478 (737)
Q Consensus 399 i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~ 478 (737)
+++||+++++++++.|.+.++..++|.||+||++..++.... .....+ +++|+|++|+. ++
T Consensus 317 i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~---~~~~~~-~~vG~p~~~~~-----~~---------- 377 (537)
T PRK13382 317 AAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPA---DLRAAP-DTAGRPAEGTE-----IR---------- 377 (537)
T ss_pred EEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChh---HhccCC-CCccccCcCcE-----EE----------
Confidence 999999999999999999999899999999999866554321 112334 68899998888 77
Q ss_pred cccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeec
Q psy8076 479 CVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDT 558 (737)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~T 558 (737)
|+|+++++++.|+.|||+|+|| +++.||+ ++.+.. + .+|||+|
T Consensus 378 ----------------------------i~d~~~~~~~~g~~GEl~v~g~---~~~~gY~--~~~~~~-~---~~g~~~T 420 (537)
T PRK13382 378 ----------------------------ILDQDFREVPTGEVGTIFVRND---TQFDGYT--SGSTKD-F---HDGFMAS 420 (537)
T ss_pred ----------------------------EECCCCCCCCCCCeeEEEEEcC---CcccCcc--ccchhh-c---cCCCEee
Confidence 9999999999999999999999 9999998 343332 2 2789999
Q ss_pred CceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCcccc
Q psy8076 559 MDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGL 638 (737)
Q Consensus 559 GDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~ 638 (737)
||++++++||+++|.||+||+||++|++|++.|||++|.+||+|.+++|++++++..++.++++|++.++
T Consensus 421 GDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~---------- 490 (537)
T PRK13382 421 GDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPG---------- 490 (537)
T ss_pred CceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCC----------
Confidence 9999999999999999999999999999999999999999999999999999998888999999998654
Q ss_pred ccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHH
Q psy8076 639 IGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIV 718 (737)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~ 718 (737)
. ....++++++++++|+.|++|..++++++||+|++||++|++|+
T Consensus 491 --~---------------------------------~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~gK~~r~~L~ 535 (537)
T PRK13382 491 --A---------------------------------SATPETLKQHVRDNLANYKVPRDIVVLDELPRGATGKILRRELQ 535 (537)
T ss_pred --C---------------------------------CCCHHHHHHHHHHhccCCCCCcEEEEeccCCCCCCCCCcHHhhC
Confidence 1 11246799999999999999999999999999999999999986
Q ss_pred H
Q psy8076 719 D 719 (737)
Q Consensus 719 ~ 719 (737)
+
T Consensus 536 ~ 536 (537)
T PRK13382 536 A 536 (537)
T ss_pred C
Confidence 4
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-68 Score=719.76 Aligned_cols=552 Identities=20% Similarity=0.286 Sum_probs=454.9
Q ss_pred eeeeeeecccccccccccCC-hhHHHHHHHHHhhChhhHHHHHHhhcccccCccccccCCCCCCCCCCCCCchhHHHHHH
Q psy8076 5 KCDISLDFSGNKINECTSNQ-NDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAI 83 (737)
Q Consensus 5 ~~~~~~~y~~~~~~~~~~~~-~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~l 83 (737)
++.++++|++++|+..++++ +++|..+++.++++|+..++++ ..++..+. .+ +..++.... .....+++++|
T Consensus 1065 ~l~~~~~y~~~~~~~~~i~~l~~~~~~~l~~~~~~p~~~~~~l-~l~~~~~~-~~-l~~~~~~~~----~~~~~~l~~~~ 1137 (4334)
T PRK05691 1065 RLTLSFDYAAELFDAATIERLAEHFLALLEQVCEDPQRALGDV-QLLDAAER-AQ-LAQWGQAPC----APAQAWLPELL 1137 (4334)
T ss_pred cEEEEEEEchhhCCHHHHHHHHHHHHHHHHHHHhCcccchhhh-cCCCHHHH-HH-HHhccCCCC----CCccCCHHHHH
Confidence 58899999999999999999 6689999999999999999888 23222221 12 223332111 11123588999
Q ss_pred hhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEe
Q psy8076 84 DRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSV 163 (737)
Q Consensus 84 ~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vp 163 (737)
+++++++ |+++|+++.+ +.+||+||+++++++|+.|.++|+++|++|+|++++++++++++|||+++|++++|
T Consensus 1138 ~~~a~~~-p~~~Al~~~~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~~~vp 1210 (4334)
T PRK05691 1138 NEQARQT-PERIALVWDG------GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAYVP 1210 (4334)
T ss_pred HHHHHhC-CCCeEEEECC------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 9999998 9999999876 78999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCC--eEEEEecccccccccCCCCcccHHH
Q psy8076 164 VFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPD--YCIIFQRRCVEEAELTPGYDILWDD 241 (737)
Q Consensus 164 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~viv~~~~~~~~~~~~~~~~~~~~~ 241 (737)
++|.+|.+++.+++++++++++|++...... ++ ... .++.+... ....
T Consensus 1211 ld~~~p~~rl~~il~~~~~~~vi~~~~~~~~----------------~~-~~~~~~~~~~~~~-------------~~~~ 1260 (4334)
T PRK05691 1211 LDPDYPAERLAYMLADSGVELLLTQSHLLER----------------LP-QAEGVSAIALDSL-------------HLDS 1260 (4334)
T ss_pred cCcCChHHHHHHHHHhcCCCEEEecchhhhh----------------cc-cccCceEEeeccc-------------cccc
Confidence 9999999999999999999999998653211 00 010 11111110 0000
Q ss_pred HHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccc
Q psy8076 242 ALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMG 321 (737)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~ 321 (737)
. ....+.....+++++|++||||||| .||||+++|+++...+.+ +...++++++|++++.+|++
T Consensus 1261 ~---~~~~~~~~~~~~~~a~ii~TSGSTG------------~PKgV~~~h~~l~~~~~~-~~~~~~~~~~d~~l~~~~~~ 1324 (4334)
T PRK05691 1261 W---PSQAPGLHLHGDNLAYVIYTSGSTG------------QPKGVGNTHAALAERLQW-MQATYALDDSDVLMQKAPIS 1324 (4334)
T ss_pred c---CCCCCCCCCCCCCeEEEEEcCCCCC------------CCceeEeecHHHHHHHHH-HHHhcCCCCCCEEEEeCCcc
Confidence 0 0011122356789999999999999 999999999886666554 56678999999999999999
Q ss_pred cccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEe
Q psy8076 322 WVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFV 401 (737)
Q Consensus 322 ~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~ 401 (737)
|+.+ .++++.+|+.|+++++.+... ..++..+++.++++++|++.++|++++.|..... ...+++||.+++
T Consensus 1325 fd~s-~~~~~~~L~~G~~l~i~~~~~--~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~------~~~~~~lr~~~~ 1395 (4334)
T PRK05691 1325 FDVS-VWECFWPLITGCRLVLAGPGE--HRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL------AAACTSLRRLFS 1395 (4334)
T ss_pred HHHH-HHHHHHHHhCCCEEEEcCccc--cCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc------cccCCcccEEEE
Confidence 9998 567999999999999986433 3789999999999999999999999999976432 235789999999
Q ss_pred ecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccc
Q psy8076 402 AGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCV 480 (737)
Q Consensus 402 gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~ 480 (737)
|||++++++.++|.+.+ +..++|.||+||+++.++..... ...... .++|+|++|+. ++
T Consensus 1396 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~--~~~~~~-~~iG~p~~~~~-----~~------------ 1455 (4334)
T PRK05691 1396 GGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQ--AEDGER-SPIGRPLGNVL-----CR------------ 1455 (4334)
T ss_pred eecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecc--cccCCC-CcccceeCCCE-----EE------------
Confidence 99999999999998887 57899999999998776654321 122223 68999999988 77
Q ss_pred cccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccC-----CCCe
Q psy8076 481 RILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTK-----FPGY 555 (737)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~-----~~g~ 555 (737)
|+|++++++|.|++|||+|+|| ++++||+++++.+.+.|..+ ..+|
T Consensus 1456 --------------------------i~d~~~~~vp~G~~GEL~i~G~---~v~~GYl~~p~~t~~~f~~~p~~~~~~r~ 1506 (4334)
T PRK05691 1456 --------------------------VLDAELNLLPPGVAGELCIGGA---GLARGYLGRPALTAERFVPDPLGEDGARL 1506 (4334)
T ss_pred --------------------------EECCCCCCCCCCCceEEEecCc---ccchhhcCCccccHhhCCCCCCCCCCceE
Confidence 9999999999999999999999 99999999999998887642 2359
Q ss_pred eecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCc
Q psy8076 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGF 635 (737)
Q Consensus 556 ~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~ 635 (737)
|+|||+|++++||+++|+||+|+|||++|+||+|.|||++|.+||+|.+|+|++..+. .++.+++|++....
T Consensus 1507 yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~-~~~~lva~~~~~~~------- 1578 (4334)
T PRK05691 1507 YRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGA-AGAQLVGYYTGEAG------- 1578 (4334)
T ss_pred EEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeCC-CCCEEEEEEEeCCC-------
Confidence 9999999999999999999999999999999999999999999999999999976554 45789999887654
Q ss_pred cccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHH
Q psy8076 636 SGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARK 715 (737)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~ 715 (737)
. ....++|+++++++||.||+|..++++++||+|+|||+||+
T Consensus 1579 -----~---------------------------------~~~~~~l~~~l~~~Lp~y~vP~~~~~~~~lP~t~~GKidr~ 1620 (4334)
T PRK05691 1579 -----Q---------------------------------EAEAERLKAALAAELPEYMVPAQLIRLDQMPLGPSGKLDRR 1620 (4334)
T ss_pred -----C---------------------------------CCCHHHHHHHHHHhCccccCCcEEEEccccCCCCCCCcChh
Confidence 1 11245899999999999999999999999999999999999
Q ss_pred HHHHH
Q psy8076 716 SIVDM 720 (737)
Q Consensus 716 ~l~~~ 720 (737)
+|++.
T Consensus 1621 ~L~~~ 1625 (4334)
T PRK05691 1621 ALPEP 1625 (4334)
T ss_pred hcCcc
Confidence 99764
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-68 Score=615.54 Aligned_cols=534 Identities=16% Similarity=0.169 Sum_probs=398.5
Q ss_pred hhHHHHHHhhhhhccCCCceEEEEeCC---CCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHH
Q psy8076 76 INACYNAIDRHVERGMAKKVALIHDSP---VTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSML 152 (737)
Q Consensus 76 ~n~~~~~l~~~~~~~~pd~~Al~~~~~---~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~l 152 (737)
.+++.++|+++++++ ||++|+.+.+. ..+.+..+||+||+++++++|++|.++|+++||+|+|+++|++||++++|
T Consensus 44 ~~t~~~~l~~~a~~~-pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~l 122 (666)
T PLN02614 44 MDSCWDVFRMSVEKY-PNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISME 122 (666)
T ss_pred CCcHHHHHHHHHHhC-CCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 346889999999998 99999986421 12335679999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcC---CCCCeEEEEeccccccc
Q psy8076 153 ATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISS---CKPDYCIIFQRRCVEEA 229 (737)
Q Consensus 153 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~viv~~~~~~~~~ 229 (737)
||+++|+++||+++.++.+++.+++++++++++|+++.. +.......+ ..++.++++........
T Consensus 123 A~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~------------~~~~~~~~~~~~~~l~~vi~~~~~~~~~~ 190 (666)
T PLN02614 123 ACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKK------------ISELFKTCPNSTEYMKTVVSFGGVSREQK 190 (666)
T ss_pred HHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHH------------HHHHHHhcccccccceEEEEeCCCChHHh
Confidence 999999999999999999999999999999999997531 111212221 12455665532100000
Q ss_pred -cc--CCCCcccHHHHHhhcCC--CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhh
Q psy8076 230 -EL--TPGYDILWDDALAQRLS--HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSV 304 (737)
Q Consensus 230 -~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~ 304 (737)
.. .......+.++...... .......++|+++|+||||||| .||||+++|++++.........
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG------------~PKGV~lth~nl~~~~~~~~~~ 258 (666)
T PLN02614 191 EEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTG------------DPKGVMISNESIVTLIAGVIRL 258 (666)
T ss_pred hhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCC------------CCcEEEEecHHHHHHHHHHHhh
Confidence 00 00012345555443221 1223356799999999999999 9999999999877665442222
Q ss_pred h----hcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHH
Q psy8076 305 I----YNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRR 380 (737)
Q Consensus 305 ~----~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~ 380 (737)
. ++++.+|++++++|++|+++... .+..+..|+++++.+ .++..+++.|+++++|+++++|++++.+..
T Consensus 259 ~~~~~~~~~~~d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~------~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~ 331 (666)
T PLN02614 259 LKSANAALTVKDVYLSYLPLAHIFDRVI-EECFIQHGAAIGFWR------GDVKLLIEDLGELKPTIFCAVPRVLDRVYS 331 (666)
T ss_pred ccccccCCCCCcEEEEeccHHHHHHHHH-HHHHHHhCCEEEEeC------CCHHHHHHHHHHhCCeEEEecHHHHHHHHH
Confidence 1 25788999999999999988654 566788999998864 478899999999999999999999998764
Q ss_pred cCCCC----c-----------------------cccCC-------------CC-CCccEEEeecCCCCHHHHHHHHHhc-
Q psy8076 381 EDKDS----T-----------------------LGAQY-------------ST-DSLRYLFVAGEHCDHETKNWAEKSF- 418 (737)
Q Consensus 381 ~~~~~----~-----------------------~~~~~-------------~l-~~Lr~i~~gGe~l~~~~~~~~~~~~- 418 (737)
..... . ..... .+ ++||.+++||+++++++ ..|.+.+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~ 410 (666)
T PLN02614 332 GLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVA 410 (666)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhc
Confidence 21000 0 00000 11 68999999999999876 4555566
Q ss_pred CCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCc
Q psy8076 419 NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNAT 498 (737)
Q Consensus 419 ~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (737)
++++++.||+||+++..+.... ....++ +++|+|+||++ ++
T Consensus 411 ~~~i~~~YG~TE~~~~~~~~~~---~~~~~~-gsvG~p~pg~e-----vk------------------------------ 451 (666)
T PLN02614 411 CCHVLQGYGLTESCAGTFVSLP---DELDML-GTVGPPVPNVD-----IR------------------------------ 451 (666)
T ss_pred CCCEEeeCchHhhhhheeeecc---ccCCcC-CcccCcCCceE-----EE------------------------------
Confidence 4899999999999865433221 112234 78999999888 77
Q ss_pred ccccceEEEEc-CC--CCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEee
Q psy8076 499 HFTSVEVRIIR-ND--GSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTAR 575 (737)
Q Consensus 499 ~~~~~~~~Ivd-~~--g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR 575 (737)
|+| ++ +++++.|+.|||+|+|| +++.|||++++.|.+.| . +|||+|||+|++|+||+|+|+||
T Consensus 452 --------i~d~~~~~~~~~~~g~~GEl~vrGp---~v~~GY~~~pe~T~~~f-~--dGw~~TGDlg~~d~dG~l~i~gR 517 (666)
T PLN02614 452 --------LESVPEMEYDALASTPRGEICIRGK---TLFSGYYKREDLTKEVL-I--DGWLHTGDVGEWQPNGSMKIIDR 517 (666)
T ss_pred --------EeeecccCcccCCCCCCceEEEcCC---cccccccCCHHHhhhhh-c--cCCcccceEEEEcCCCCEEEEEc
Confidence 887 33 47899999999999999 99999999999998886 2 79999999999999999999999
Q ss_pred cCCeEee-CcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCc
Q psy8076 576 DDDVINV-AGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNP 654 (737)
Q Consensus 576 ~dd~Ik~-~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (737)
+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.... ..++|+|++..+.+..+.....+.
T Consensus 518 ~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~---~~l~alvv~~~~~~~~~~~~~~~~-------------- 580 (666)
T PLN02614 518 KKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFE---SFLVAIANPNQQILERWAAENGVS-------------- 580 (666)
T ss_pred chhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCc---ceEEEEEeCCHHHHHHHHHhcCCC--------------
Confidence 9999997 5999999999999999999999999997532 259999998765332221111000
Q ss_pred cccccCCCCCCcccccCCChHHHHHH----HHHHHH-HhcCCceeeeeEEEcCC-C-----CCCCCchhhHHHHHHHHcC
Q psy8076 655 IRVLIKPYGPISSIYCTRSDEEIGKE----LKELVR-EAIGPIAAFKLSTSVTG-L-----PRTRSGKTARKSIVDMARN 723 (737)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~l~-~~l~~~~~p~~~~~v~~-l-----P~t~sGKi~R~~l~~~~~~ 723 (737)
.+...........+. +.+..+ +.|+.|..++.|.++++ | .+|+++|+.|+.+.+.|.+
T Consensus 581 -----------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~ 649 (666)
T PLN02614 581 -----------GDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQS 649 (666)
T ss_pred -----------cCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHH
Confidence 000000111233333 433333 56999999999998864 3 4899999999999998865
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-67 Score=600.90 Aligned_cols=508 Identities=23% Similarity=0.303 Sum_probs=408.6
Q ss_pred hhHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEecCCHHHHHHHHHH
Q psy8076 76 INACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAA-IGVSAGDRVLIYMPLIPEAIVSMLAT 154 (737)
Q Consensus 76 ~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~~~~e~vva~lA~ 154 (737)
++.+..++++ ... |+++|+++... ..++||+||+++++++|++|.+ +|+++||+|+++++|++++++++|||
T Consensus 40 ~~~~~~l~~~--~~~-~~~~a~~~~~~----~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~ 112 (560)
T PLN02574 40 LDAVSFIFSH--HNH-NGDTALIDSST----GFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAV 112 (560)
T ss_pred CCHHHHHhcC--ccc-CCCCEEEECCC----CCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHH
Confidence 4455666665 445 99999997541 2479999999999999999999 99999999999999999999999999
Q ss_pred HHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCC
Q psy8076 155 VRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPG 234 (737)
Q Consensus 155 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~ 234 (737)
+++|++++|++|.++.+++.++++++++++++++.... ..+. .. .. .++.+..... ......
T Consensus 113 ~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~---------~~~~----~~--~~-~~~~~~~~~~--~~~~~~ 174 (560)
T PLN02574 113 LSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENV---------EKLS----PL--GV-PVIGVPENYD--FDSKRI 174 (560)
T ss_pred HHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHH---------HHHH----hc--CC-cEEecCcccc--cccCcc
Confidence 99999999999999999999999999999999986421 1111 11 11 1222211100 000001
Q ss_pred CcccHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHh---hhhcC-C
Q psy8076 235 YDILWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMS---VIYNM-G 309 (737)
Q Consensus 235 ~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~---~~~~~-~ 309 (737)
....+.++...... .......++++++++||||||| .||||+++|++++.+...... ..+.. .
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~ 242 (560)
T PLN02574 175 EFPKFYELIKEDFDFVPKPVIKQDDVAAIMYSSGTTG------------ASKGVVLTHRNLIAMVELFVRFEASQYEYPG 242 (560)
T ss_pred CcccHHHHhhcCCcccccCCCCcCCEEEEEcCCCccC------------CCcEEEEeHHHHHHHHHHHHhccccccccCC
Confidence 11234444333222 1223356789999999999999 999999999987765543221 11222 3
Q ss_pred CCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCcccc
Q psy8076 310 QDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGA 389 (737)
Q Consensus 310 ~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~ 389 (737)
.+++++..+|++|.+|+...++.++..|+++++.+. +++..+++.|+++++|++.++|++++.|.+..... .
T Consensus 243 ~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---~ 314 (560)
T PLN02574 243 SDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRR-----FDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV---C 314 (560)
T ss_pred CCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecC-----CCHHHHHHHHHHcCCeEEecCCHHHHHHHhCcccc---c
Confidence 568899999999999987767788899999998863 68999999999999999999999999998764321 2
Q ss_pred CCCCCCccEEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceee
Q psy8076 390 QYSTDSLRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIV 468 (737)
Q Consensus 390 ~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~ 468 (737)
..++++||.+++||+++++++.+++.+.+ +..+++.||+||++...+.... .....++ +++|+|++++. ++
T Consensus 315 ~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~--~~~~~~~-~~vG~~~~~~~-----v~ 386 (560)
T PLN02574 315 GEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFN--TEKLSKY-SSVGLLAPNMQ-----AK 386 (560)
T ss_pred cCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCC--ccccCCC-CceeeeCCCcE-----EE
Confidence 34678999999999999999999999888 5899999999999865443211 1111233 67888888887 77
Q ss_pred eeccccCccccccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhhhHHh
Q psy8076 469 MLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKI 547 (737)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~ 547 (737)
|+| ++|++++.|+.|||||+|| +++.||+++++.+.+.
T Consensus 387 --------------------------------------i~d~~~g~~~~~g~~Gei~v~g~---~~~~GY~~~~~~t~~~ 425 (560)
T PLN02574 387 --------------------------------------VVDWSTGCLLPPGNCGELWIQGP---GVMKGYLNNPKATQST 425 (560)
T ss_pred --------------------------------------EEeCCCCcCCCCCCCeEEEEECc---chhhhhcCChhHhhhh
Confidence 999 7899999999999999999 9999999999998877
Q ss_pred hccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeec
Q psy8076 548 YFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKR 627 (737)
Q Consensus 548 ~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~ 627 (737)
|. .+|||+|||+|++|+||+++|+||.||+||++|++|++.|||++|.+||+|.+++|++++++..++.++++|+.++
T Consensus 426 ~~--~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~ 503 (560)
T PLN02574 426 ID--KDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQ 503 (560)
T ss_pred cc--CCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCC
Confidence 64 3799999999999999999999999999999999999999999999999999999999999888889999998765
Q ss_pred CCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCC
Q psy8076 628 IPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRT 707 (737)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t 707 (737)
+ . . ...++|+++++++|++|+.|+.++++++||+|
T Consensus 504 ~------------~-------------------------------~--~~~~~l~~~~~~~l~~~~~p~~v~~v~~iP~t 538 (560)
T PLN02574 504 G------------S-------------------------------T--LSQEAVINYVAKQVAPYKKVRKVVFVQSIPKS 538 (560)
T ss_pred C------------C-------------------------------C--CCHHHHHHHHHHhccCcccCcEEEEeeccCCC
Confidence 4 1 0 12367999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHcCC
Q psy8076 708 RSGKTARKSIVDMARNK 724 (737)
Q Consensus 708 ~sGKi~R~~l~~~~~~~ 724 (737)
++||++|+.|++++.+.
T Consensus 539 ~~GKi~r~~L~~~~~~~ 555 (560)
T PLN02574 539 PAGKILRRELKRSLTNS 555 (560)
T ss_pred CcchhhHHHHHHHHhhc
Confidence 99999999999998664
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-66 Score=591.97 Aligned_cols=506 Identities=20% Similarity=0.293 Sum_probs=415.8
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
.+.+++.++++++ |+++|+++.+ ..+++||+||+++++++|++|.++|+++||+|+++++|++++++++|||+++
T Consensus 24 ~~~~~l~~~~~~~-~~~~a~~~~~----~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~ 98 (537)
T PLN02246 24 PLHDYCFERLSEF-SDRPCLIDGA----TGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRR 98 (537)
T ss_pred cHHHHHHHHHHhC-CCCeEEEecC----CCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHc
Confidence 3667788888887 9999998653 1268999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|++|.++.+++..+++.++++++++++.. ...+.+.... . . ..++.+... .....
T Consensus 99 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~---------~~~~~~~~~~-~-~-~~~i~~~~~--------~~~~~ 158 (537)
T PLN02246 99 GAVTTTANPFYTPAEIAKQAKASGAKLIITQSCY---------VDKLKGLAED-D-G-VTVVTIDDP--------PEGCL 158 (537)
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCcEEEEccch---------HHHHHHHhhc-C-C-ceEEEeCCC--------CCCce
Confidence 9999999999999999999999999999998652 2222222111 1 1 133333321 01123
Q ss_pred cHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHh---hhhcCCCCcE
Q psy8076 238 LWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMS---VIYNMGQDDV 313 (737)
Q Consensus 238 ~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~---~~~~~~~~d~ 313 (737)
.+.+....... .+.....++++++++||||||| .||||+++|++++.+...... ..+++..+|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG------------~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~ 226 (537)
T PLN02246 159 HFSELTQADENELPEVEISPDDVVALPYSSGTTG------------LPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDV 226 (537)
T ss_pred eHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCC------------CCceEEEeHHHHHHHHHHHhhccccccCCCCCcE
Confidence 33443332211 2223456799999999999999 999999999987766554322 2467889999
Q ss_pred EEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCC
Q psy8076 314 WWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYST 393 (737)
Q Consensus 314 ~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l 393 (737)
++..+|++|++++...++.++..|+++++.+. .++..+++.|+++++|++.++|+++..|.+.... ...++
T Consensus 227 ~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~----~~~~~ 297 (537)
T PLN02246 227 ILCVLPMFHIYSLNSVLLCGLRVGAAILIMPK-----FEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVV----EKYDL 297 (537)
T ss_pred EEEeechHHHHHHHHHHHHHHhcCCEEEEeCC-----CCHHHHHHHHHHhCceEEEcchHHHHHHhcCccc----cccCc
Confidence 99999999999977767889999999999874 6789999999999999999999999998875432 33467
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccc-cCCCCCCCCCCccCCCcCCCCCCcceeeeec
Q psy8076 394 DSLRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCL-GYQHDTVPPKYSTGLPFPGYDGKYVNIVMLN 471 (737)
Q Consensus 394 ~~Lr~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~-~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~ 471 (737)
+++|.+++||+++++++.+++.+.+ +..+++.||+||++..++.... .......++ +++|+|+++++ ++
T Consensus 298 ~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~-~~~G~~~~~~~-----~~--- 368 (537)
T PLN02246 298 SSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKS-GSCGTVVRNAE-----LK--- 368 (537)
T ss_pred cceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCCCCccccC-CccccccCCcE-----EE---
Confidence 8999999999999999999999988 5779999999999865443211 011122334 57788888877 77
Q ss_pred cccCccccccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhcc
Q psy8076 472 WLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFT 550 (737)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~ 550 (737)
|+| +++++++.|+.|||+|+|+ +++.||+++++.+.+.+.
T Consensus 369 -----------------------------------i~d~~~~~~~~~g~~Gel~v~g~---~~~~GY~~~~~~~~~~~~- 409 (537)
T PLN02246 369 -----------------------------------IVDPETGASLPRNQPGEICIRGP---QIMKGYLNDPEATANTID- 409 (537)
T ss_pred -----------------------------------EecCCCCCcCCCCCceEEEEECC---chhccccCCchhhhhccc-
Confidence 999 5789999999999999999 999999999998877653
Q ss_pred CCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCC
Q psy8076 551 KFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPL 630 (737)
Q Consensus 551 ~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~ 630 (737)
.+|||+|||+|+++++|++++.||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++.++++++..++
T Consensus 410 -~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-- 486 (537)
T PLN02246 410 -KDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNG-- 486 (537)
T ss_pred -CCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCC--
Confidence 37899999999999999999999999999999999999999999999999999999999988888889999987654
Q ss_pred CcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCc
Q psy8076 631 DKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSG 710 (737)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sG 710 (737)
. ....++|+++++++|+.|+.|..++++++||+|++|
T Consensus 487 ----------~---------------------------------~~~~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~G 523 (537)
T PLN02246 487 ----------S---------------------------------EITEDEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSG 523 (537)
T ss_pred ----------C---------------------------------CCCHHHHHHHHHhhCcCccccceEEEeccCCCCCcc
Confidence 1 012468999999999999999999999999999999
Q ss_pred hhhHHHHHHHHcC
Q psy8076 711 KTARKSIVDMARN 723 (737)
Q Consensus 711 Ki~R~~l~~~~~~ 723 (737)
|++|++|++++.+
T Consensus 524 Ki~r~~L~~~~~~ 536 (537)
T PLN02246 524 KILRKDLRAKLAA 536 (537)
T ss_pred hhhHHHHHHHHhc
Confidence 9999999998765
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=594.49 Aligned_cols=525 Identities=19% Similarity=0.227 Sum_probs=413.1
Q ss_pred CCCCCCCCchhHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHH
Q psy8076 67 FTKWFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPE 146 (737)
Q Consensus 67 ~~~~~~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e 146 (737)
...|+.....+.+.++|+++++++ |+++|+++.+ ..+.+||+||.++++++|++|.+.|+++||+|+|+++|+++
T Consensus 6 ~~~~~~~~~~~~l~~~l~~~a~~~-p~~~ai~~~~----~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~ 80 (534)
T PRK05852 6 GAAPMASDFGPRIADLVEVAATRL-PEAPALVVTA----DRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAE 80 (534)
T ss_pred cccchhhhhcccHHHHHHHHHHhC-CCCcEEEecC----CCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHH
Confidence 345666666677899999999888 9999998754 13689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccc
Q psy8076 147 AIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCV 226 (737)
Q Consensus 147 ~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~ 226 (737)
+++++|||+++|++++|++|.++.+++.+++++++++++|++........ ... .. .....+.+.....
T Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~--------~~~---~~-~~~~~~~~~~~~~ 148 (534)
T PRK05852 81 FVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRA--------EPT---TR-WWPLTVNVGGDSG 148 (534)
T ss_pred HHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhc--------ccc---cc-ccceeeeeccccc
Confidence 99999999999999999999999999999999999999999764221000 000 00 0111111111100
Q ss_pred cccccCCCCcccHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhh
Q psy8076 227 EEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIY 306 (737)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~ 306 (737)
.... .....+.................+++++++||||||| .||||+++|+++...... +...+
T Consensus 149 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG------------~PKgv~~~~~~~~~~~~~-~~~~~ 212 (534)
T PRK05852 149 PSGG---TLSVHLDAATEPTPATSTPEGLRPDDAMIMFTGGTTG------------LPKMVPWTHANIASSVRA-IITGY 212 (534)
T ss_pred cccc---ccccccccccCCCccccccCCCCCCceEEEeCCCCCC------------CCcEEEecHHHHHHHHHH-HHHHh
Confidence 0000 0000011100000000111123578899999999999 999999999886655544 45567
Q ss_pred cCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCc
Q psy8076 307 NMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDST 386 (737)
Q Consensus 307 ~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~ 386 (737)
+++.+|++++.+|++|..++...++.++..|+++++.... ..++..+++.|+++++|++.++|+++..|.+......
T Consensus 213 ~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 289 (534)
T PRK05852 213 RLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARG---RFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP 289 (534)
T ss_pred CCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCc---CcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc
Confidence 8999999999999999999888889999999998885432 3678899999999999999999999999987653221
Q ss_pred cccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCC--cCCCCCCc
Q psy8076 387 LGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLP--FPGYDGKY 464 (737)
Q Consensus 387 ~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p--~~g~~~~~ 464 (737)
...+++++|.++++|+++++++.+++.+.++.++++.||+||++..++............+..+.|.+ .+|+.
T Consensus 290 --~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~--- 364 (534)
T PRK05852 290 --SGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQ--- 364 (534)
T ss_pred --ccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCccccccccCcccccccCCCCCCCe---
Confidence 23356899999999999999999999999999999999999998655543210000000000122222 34444
Q ss_pred ceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhh
Q psy8076 465 VNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRF 544 (737)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~ 544 (737)
++|+|++|+++++|+.|||+|+|+ .+++||+++++.+
T Consensus 365 ----------------------------------------~~i~d~~g~~~~~g~~Gel~v~g~---~v~~gY~~~~~~t 401 (534)
T PRK05852 365 ----------------------------------------IRIVGSDGLPLPAGAVGEVWLRGT---TVVRGYLGDPTIT 401 (534)
T ss_pred ----------------------------------------EEEECCCCCCCCCCCceEEEEecC---cccchhcCCcccc
Confidence 449999999999999999999999 9999999999998
Q ss_pred HHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEE
Q psy8076 545 MKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYI 624 (737)
Q Consensus 545 ~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~ 624 (737)
.+.|. +|||+|||+|++|+||++++.||.||+||++|.+|+|.|||++|.++|+|.+|+|++++++..++.++++|+
T Consensus 402 ~~~~~---~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv 478 (534)
T PRK05852 402 AANFT---DGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIV 478 (534)
T ss_pred hhhhc---CCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEE
Confidence 87752 689999999999999999999999999999999999999999999999999999999999888899999998
Q ss_pred eecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCC
Q psy8076 625 KKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGL 704 (737)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~l 704 (737)
.++. . ....++|.++++++|+.+++|..++++++|
T Consensus 479 ~~~~------------~---------------------------------~~~~~~i~~~~~~~l~~~~~P~~i~~v~~i 513 (534)
T PRK05852 479 PRES------------A---------------------------------PPTAEELVQFCRERLAAFEIPASFQEASGL 513 (534)
T ss_pred ECCC------------C---------------------------------CCCHHHHHHHHHHhcccccCCeEEEEhhhc
Confidence 7654 1 012467999999999999999999999999
Q ss_pred CCCCCchhhHHHHHHHHcC
Q psy8076 705 PRTRSGKTARKSIVDMARN 723 (737)
Q Consensus 705 P~t~sGKi~R~~l~~~~~~ 723 (737)
|+|++||++|++|++.+..
T Consensus 514 P~t~~GKi~r~~L~~~~~~ 532 (534)
T PRK05852 514 PHTAKGSLDRRAVAEQFGH 532 (534)
T ss_pred CCCCCccccHHHHHHHhcc
Confidence 9999999999999998864
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-66 Score=595.28 Aligned_cols=510 Identities=20% Similarity=0.272 Sum_probs=411.7
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEecCCHHHHHHHHHHHH
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAA-IGVSAGDRVLIYMPLIPEAIVSMLATVR 156 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~~~~e~vva~lA~~~ 156 (737)
++.++|+++++.+ |+++|++..+ +.+||+||+++++++|+.|.+ .|+++||+|+++++|++++++++|||++
T Consensus 25 ~~~~~l~~~a~~~-p~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~ 97 (562)
T PRK05677 25 NIQAVLKQSCQRF-ADKPAFSNLG------KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMR 97 (562)
T ss_pred cHHHHHHHHHHhC-CCCeeEEECC------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 4678888888887 9999999765 799999999999999999997 5999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccc--------
Q psy8076 157 LGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEE-------- 228 (737)
Q Consensus 157 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~-------- 228 (737)
+|++++|++|.++.+++.+++++++++++|+++... ..+.+..... ..+.+++........
T Consensus 98 ~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 166 (562)
T PRK05677 98 AGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMA---------HLAEKVLPKT--GVKHVIVTEVADMLPPLKRLLIN 166 (562)
T ss_pred cCeEEeecCCCCCHHHHHHHHhccCceEEEEecchh---------hhHHHhhhcc--CcceeEEecccccccchhhhhcc
Confidence 999999999999999999999999999999976421 1222222111 223333221100000
Q ss_pred ----------cccCCCCcccHHHHHhhcCC--CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHH
Q psy8076 229 ----------AELTPGYDILWDDALAQRLS--HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIA 296 (737)
Q Consensus 229 ----------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~ 296 (737)
..........+.+.+..... .......++++++++||||||| .||||+++|++++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgv~~s~~~l~~ 234 (562)
T PRK05677 167 AVVKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTG------------VAKGAMLTHRNLVA 234 (562)
T ss_pred cchhhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCC------------CCcEEEEehhHHHH
Confidence 00000112233443322211 1123356799999999999999 99999999998766
Q ss_pred HHHHHHhhhhc--CCC-CcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHH
Q psy8076 297 TLAWTMSVIYN--MGQ-DDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPT 373 (737)
Q Consensus 297 ~~~~~~~~~~~--~~~-~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~ 373 (737)
+... ....++ +.. .+++++.+|++|..++.+.++..+..|++.++.+. ..++..+++.|+++++|+++.+|+
T Consensus 235 ~~~~-~~~~~~~~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~p~ 309 (562)
T PRK05677 235 NMLQ-CRALMGSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISN----PRDLPAMVKELGKWKFSGFVGLNT 309 (562)
T ss_pred HHHH-HHHHhccCCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecC----cccHHHHHHHHHHcCceEEecHHH
Confidence 5443 222232 333 46889999999999987778888889998877654 257899999999999999999999
Q ss_pred HHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCcc
Q psy8076 374 ALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYST 453 (737)
Q Consensus 374 ~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~ 453 (737)
++..+...... ...+++++|.+++||+++++++.++|.+.+++++++.||+||++..++.... ....+ +++
T Consensus 310 ~~~~l~~~~~~----~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~----~~~~~-~~v 380 (562)
T PRK05677 310 LFVALCNNEAF----RKLDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPS----QAIQV-GTI 380 (562)
T ss_pred HHHHHHhCccc----ccCChhhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccccCcceeecCc----cCCCC-Ccc
Confidence 99998775432 2345679999999999999999999999999999999999999866554321 12234 678
Q ss_pred CCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCc
Q psy8076 454 GLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGT 533 (737)
Q Consensus 454 G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~ 533 (737)
|.|++++. ++ |+|++++++|.|+.|||+|+|| .+
T Consensus 381 G~~~~~~~-----v~--------------------------------------i~d~~~~~~~~g~~Gel~v~g~---~~ 414 (562)
T PRK05677 381 GIPVPSTL-----CK--------------------------------------VIDDDGNELPLGEVGELCVKGP---QV 414 (562)
T ss_pred CccCCCCE-----EE--------------------------------------EECCCCCCCCCCCCeEEEEecC---cc
Confidence 88888887 77 9999999999999999999999 99
Q ss_pred ccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCC
Q psy8076 534 MSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613 (737)
Q Consensus 534 ~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~ 613 (737)
+.||+++++.+.+.|. .+|||+|||+|++|+||+++|.||.||+||++|++|+|.|||++|.+||+|.+++|++++++
T Consensus 415 ~~gY~~~~~~t~~~~~--~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~ 492 (562)
T PRK05677 415 MKGYWQRPEATDEILD--SDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDE 492 (562)
T ss_pred chhhcCCchhhhhccC--CCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCc
Confidence 9999999999887753 37899999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCce
Q psy8076 614 TKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIA 693 (737)
Q Consensus 614 ~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 693 (737)
..++.+++++++.+. . ....++++++++++|++|+
T Consensus 493 ~~g~~~~~~v~~~~~------------~---------------------------------~~~~~~l~~~~~~~l~~~~ 527 (562)
T PRK05677 493 KSGEAIKVFVVVKPG------------E---------------------------------TLTKEQVMEHMRANLTGYK 527 (562)
T ss_pred cCCceEEEEEEeCCC------------C---------------------------------CCCHHHHHHHHHHhhhhcc
Confidence 888889999987654 1 0124678999999999999
Q ss_pred eeeeEEEcCCCCCCCCchhhHHHHHHHHcCC
Q psy8076 694 AFKLSTSVTGLPRTRSGKTARKSIVDMARNK 724 (737)
Q Consensus 694 ~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~~ 724 (737)
+|..++++++||+|++||++|++|++++..+
T Consensus 528 ~P~~i~~v~~iP~t~sGKi~r~~L~~~~~~~ 558 (562)
T PRK05677 528 VPKAVEFRDELPTTNVGKILRRELRDEELKK 558 (562)
T ss_pred CCcEEEEeccCCCCCcccccHHHHHHHHHHh
Confidence 9999999999999999999999999877554
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-66 Score=593.93 Aligned_cols=514 Identities=21% Similarity=0.252 Sum_probs=396.8
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCC----CCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHH
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPV----TKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLAT 154 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~----~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~ 154 (737)
+.++|++++++. |+++|+++.+.. ....+++||+||+++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus 8 ~~~~l~~~a~~~-p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la~ 86 (552)
T PRK09274 8 IARHLPRAAQER-PDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFAL 86 (552)
T ss_pred HHHHHHHHHHhC-CCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHHH
Confidence 457788888887 999999986421 112348999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCC
Q psy8076 155 VRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPG 234 (737)
Q Consensus 155 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~ 234 (737)
+++|++++|++|.++.+++.+++++++++++|+++.. ................++.+... ...
T Consensus 87 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~i~~~~~-------~~~ 149 (552)
T PRK09274 87 FKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKA----------HLARRLFGWGKPSVRRLVTVGGR-------LLW 149 (552)
T ss_pred HHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHH----------HHHHHHhccCccchhheeccccc-------ccc
Confidence 9999999999999999999999999999999986421 00011101011122223322211 000
Q ss_pred CcccHHHHHhhcC--CCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCc
Q psy8076 235 YDILWDDALAQRL--SHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDD 312 (737)
Q Consensus 235 ~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d 312 (737)
....+.++..... ........++++++++||||||| .||||+++|++++..... ....+++.++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PK~v~~s~~~l~~~~~~-~~~~~~~~~~~ 216 (552)
T PRK09274 150 GGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTG------------TPKGVVYTHGMFEAQIEA-LREDYGIEPGE 216 (552)
T ss_pred CCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCC------------CCceEEecHHHHHHHHHH-HHHHhCCCCCc
Confidence 1123344331111 11223356789999999999999 999999999887665554 45568899999
Q ss_pred EEEEecccccccchhhhhhhccccCcEEEEecCCC--CCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccC
Q psy8076 313 VWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKP--DRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQ 390 (737)
Q Consensus 313 ~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~--~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~ 390 (737)
+.+...|++|..+ +..|+++++.+... ....++..+++.|+++++|+++++|++++.|.+.... ..
T Consensus 217 ~~~~~~pl~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----~~ 284 (552)
T PRK09274 217 IDLPTFPLFALFG--------PALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEA----NG 284 (552)
T ss_pred eeeeccCHHHhhh--------hhhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhh----cC
Confidence 9999988876433 34577887754221 1136899999999999999999999999999876432 34
Q ss_pred CCCCCccEEEeecCCCCHHHHHHHHHhcC--Cccccccccccccccccccccc-C----CCCCCCCCCccCCCcCCCCCC
Q psy8076 391 YSTDSLRYLFVAGEHCDHETKNWAEKSFN--VTMLNHWWQTETGHSITAHCLG-Y----QHDTVPPKYSTGLPFPGYDGK 463 (737)
Q Consensus 391 ~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~--~~i~~~YG~TE~~~~~~~~~~~-~----~~~~~~~~~~~G~p~~g~~~~ 463 (737)
.++++||.+++||+++++++.+++.+.++ +++++.||+||+++.++..... . .........++|+|+++++
T Consensus 285 ~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~-- 362 (552)
T PRK09274 285 IKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVE-- 362 (552)
T ss_pred CCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCce--
Confidence 57889999999999999999999999984 6999999999998655432210 0 0001111136788888877
Q ss_pred cceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcC---------CCCccCCCcceEEEEecCCCCCcc
Q psy8076 464 YVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRN---------DGSECEPHELGRIVVKLPLPPGTM 534 (737)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~---------~g~~~~~g~~GEL~i~g~~~~~~~ 534 (737)
++ |+|+ ++++++.|+.|||+|+|| .++
T Consensus 363 ---~~--------------------------------------ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~---~~~ 398 (552)
T PRK09274 363 ---VR--------------------------------------IIAISDAPIPEWDDALRLATGEIGEIVVAGP---MVT 398 (552)
T ss_pred ---EE--------------------------------------EEeccccccccccccccCCCCCeeEEEEecC---ccc
Confidence 76 8884 567899999999999999 899
Q ss_pred cccccChhhhHHhhccCCCC--eeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccC
Q psy8076 535 STLYKAPQRFMKIYFTKFPG--YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPE 612 (737)
Q Consensus 535 ~gy~~~~~~~~~~~~~~~~g--~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~ 612 (737)
.|||++++.+...++.+.+| ||+|||+|++|+||+++|+||.||+||++|++|+|.|||++|.+||+|.+|+|+++++
T Consensus 399 ~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~ 478 (552)
T PRK09274 399 RSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSALVGVGV 478 (552)
T ss_pred ccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHhCcccceeEEEEeCC
Confidence 99999999988877655566 9999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCc
Q psy8076 613 PTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPI 692 (737)
Q Consensus 613 ~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 692 (737)
+ .++.++++|++.++ .. ....++.+++++.+.. ++.+
T Consensus 479 ~-~~~~~~~~v~~~~~------------~~-----------------------------~~~~~l~~~l~~~l~~-~~~~ 515 (552)
T PRK09274 479 P-GAQRPVLCVELEPG------------VA-----------------------------CSKSALYQELRALAAA-HPHT 515 (552)
T ss_pred C-CCceEEEEEEccCc------------cc-----------------------------cchHHHhhhhHHHHHh-cCCC
Confidence 6 46678888888765 11 1223455666666554 3566
Q ss_pred eeeeeEEEcCCCCCC--CCchhhHHHHHHHHcCC
Q psy8076 693 AAFKLSTSVTGLPRT--RSGKTARKSIVDMARNK 724 (737)
Q Consensus 693 ~~p~~~~~v~~lP~t--~sGKi~R~~l~~~~~~~ 724 (737)
+.|..++++++||+| ++||++|++|++++...
T Consensus 516 ~~~~~~~~~~~lP~t~~~~GKi~r~~L~~~~~~~ 549 (552)
T PRK09274 516 AGIERFLIHPSFPVDIRHNAKIFREKLAVWAAKQ 549 (552)
T ss_pred cceeEEeccCCCCccccccccccHHHHHHHHHHh
Confidence 788999999999999 79999999999987653
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-66 Score=586.13 Aligned_cols=506 Identities=24% Similarity=0.331 Sum_probs=424.6
Q ss_pred hHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHH
Q psy8076 77 NACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVR 156 (737)
Q Consensus 77 n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~ 156 (737)
..+.+.|++++..+ |+++|+++.+ +++||+||++++.++|+.|.+.|+++|++|+++++|+++++++++||++
T Consensus 5 ~~i~~~l~~~~~~~-~~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~ 77 (513)
T PRK07656 5 MTLPELLARAARRF-GDKEAYVFGD------QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALK 77 (513)
T ss_pred ccHHHHHHHHHHHC-CCCeEEEeCC------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence 35778899999888 9999999976 8999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCc
Q psy8076 157 LGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYD 236 (737)
Q Consensus 157 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~ 236 (737)
+|++++|+++.++.+++..++++++++++++++... .........++ ..+.+++........ .....
T Consensus 78 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~ 144 (513)
T PRK07656 78 AGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFL---------GVDYSATTRLP-ALEHVVICETEEDDP---HTEKM 144 (513)
T ss_pred cCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhH---------HHHHHHHhccC-CccEEEEEcCccccc---Ccccc
Confidence 999999999999999999999999999999987532 22222223333 445555544321110 01123
Q ss_pred ccHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEE
Q psy8076 237 ILWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWW 315 (737)
Q Consensus 237 ~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l 315 (737)
..|.++...... ....+..++++++++||||||| .||+|.++|++++.... .+...++++++|+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG------------~PK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~ 211 (513)
T PRK07656 145 KTFTDFLAAGDPAERAPEVDPDDVADILFTSGTTG------------RPKGAMLTHRQLLSNAA-DWAEYLGLTEGDRYL 211 (513)
T ss_pred ccHHHHHhcCCCCCCcCCCCCCceEEEEeCCCCCC------------CCCEEEEecHHHHHHHH-HHHHhhCCCCCCeEE
Confidence 456666544322 2334567899999999999999 99999999987655544 455668899999999
Q ss_pred EecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCC
Q psy8076 316 TASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395 (737)
Q Consensus 316 ~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~ 395 (737)
+.+|++|.+++...++.++..|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.... ...++++
T Consensus 212 ~~~~~~~~~~~~~~~~~~l~~G~~~~~~~-----~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~----~~~~~~~ 282 (513)
T PRK07656 212 AANPFFHVFGYKAGVNAPLMRGATILPLP-----VFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDR----SAEDLSS 282 (513)
T ss_pred EccchHHHHHHHHHHHHHHHcCceEEecC-----cCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCc----CCCCccc
Confidence 99999999998777899999999998865 36899999999999999999999999999887543 3346789
Q ss_pred ccEEEeecCCCCHHHHHHHHHhcCC-cccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeecccc
Q psy8076 396 LRYLFVAGEHCDHETKNWAEKSFNV-TMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLD 474 (737)
Q Consensus 396 Lr~i~~gGe~l~~~~~~~~~~~~~~-~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~ 474 (737)
+|.+++||+++++++.+++.+.++. .+++.||+||+++..+.+.... .....+ .++|.|++++. ++
T Consensus 283 l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~-~~~~~~-~~vG~~~~~~~-----~~------ 349 (513)
T PRK07656 283 LRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDD-DRKTVA-GTIGTAIAGVE-----NK------ 349 (513)
T ss_pred eeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccc-cccccC-CCccccCCCcE-----EE------
Confidence 9999999999999999999999998 8999999999987766543311 111113 67888888877 77
Q ss_pred CccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCC
Q psy8076 475 GRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPG 554 (737)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g 554 (737)
|+|+++++++.|+.|||+++|+ .++.||++++..+...+. .+|
T Consensus 350 --------------------------------i~d~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~~~--~~~ 392 (513)
T PRK07656 350 --------------------------------IVNELGEEVPVGEVGELLVRGP---NVMKGYYDDPEATAAAID--ADG 392 (513)
T ss_pred --------------------------------EECCCCCCCCCCCceEEEEEcc---hhhhhhcCCHHHHhhhhc--cCC
Confidence 9999999999999999999999 999999999888776652 378
Q ss_pred eeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCC
Q psy8076 555 YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMG 634 (737)
Q Consensus 555 ~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~ 634 (737)
||+|||+|+++.+|+++++||.||+||++|.+|++.|||++|.++++|.+++|++.+++..++.++++++.++.
T Consensus 393 ~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~------ 466 (513)
T PRK07656 393 WLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPG------ 466 (513)
T ss_pred ceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCC------
Confidence 99999999999999999999999999999999999999999999999999999999988888889999988653
Q ss_pred ccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhH
Q psy8076 635 FSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTAR 714 (737)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R 714 (737)
. ....+++++++++.|+.+++|..++++++||+|++||++|
T Consensus 467 ------~---------------------------------~~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gK~~r 507 (513)
T PRK07656 467 ------A---------------------------------ELTEEELIAYCREHLAKYKVPRSIEFLDELPKNATGKVLK 507 (513)
T ss_pred ------C---------------------------------CCCHHHHHHHHHhhcccccCCCEEEEecCCCCCCccceeH
Confidence 0 0124678899999999999999999999999999999999
Q ss_pred HHHHH
Q psy8076 715 KSIVD 719 (737)
Q Consensus 715 ~~l~~ 719 (737)
+.|++
T Consensus 508 ~~l~~ 512 (513)
T PRK07656 508 RALRE 512 (513)
T ss_pred HHHhc
Confidence 99975
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-66 Score=587.27 Aligned_cols=511 Identities=20% Similarity=0.234 Sum_probs=418.2
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++++.+ ||++|+++.+ +.+||+||.+++.++|..|.+.|+++|++|+++++|++++++++|||+++
T Consensus 22 ~l~~~l~~~a~~~-p~~~a~~~~~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~ 94 (542)
T PRK06155 22 TLPAMLARQAERY-PDRPLLVFGG------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWL 94 (542)
T ss_pred CHHHHHHHHHHHC-CCCeEEEeCC------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHh
Confidence 3678999999998 9999999876 89999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|+++.++.+++..+++++++++++++.... ..+........ ..+.++.++.... .......
T Consensus 95 G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~ 160 (542)
T PRK06155 95 GAIAVPINTALRGPQLEHILRNSGARLLVVEAALL---------AALEAADPGDL-PLPAVWLLDAPAS----VSVPAGW 160 (542)
T ss_pred CCEEEEeccccCHHHHHHHHHhcCceEEEEChhhH---------HHHHHhccccc-CcceEEEecCccc----ccccccc
Confidence 99999999999999999999999999999986532 22222111111 2345555443211 0000011
Q ss_pred cHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEe
Q psy8076 238 LWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317 (737)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~ 317 (737)
...+..............++++++++||||||| .||||+++|+++...... ....++++.++++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG------------~PK~V~~t~~~~~~~~~~-~~~~~~~~~~~~~l~~ 227 (542)
T PRK06155 161 STAPLPPLDAPAPAAAVQPGDTAAILYTSGTTG------------PSKGVCCPHAQFYWWGRN-SAEDLEIGADDVLYTT 227 (542)
T ss_pred chhhhcccCCCCCCCCCCCCCeEEEEECCCCCC------------CCcEEEEEHHHHHHHHHH-HHHhcCCCCCCEEEEe
Confidence 111111111111223456789999999999999 999999999886555433 4556889999999999
Q ss_pred cccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCcc
Q psy8076 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLR 397 (737)
Q Consensus 318 ~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr 397 (737)
.|++|..++. .++.++..|+++++.+. .++..+++.|+++++|++.++|+++..|.+.... .....+++|
T Consensus 228 ~pl~~~~~~~-~~~~~l~~G~~~~~~~~-----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~----~~~~~~~l~ 297 (542)
T PRK06155 228 LPLFHTNALN-AFFQALLAGATYVLEPR-----FSASGFWPAVRRHGATVTYLLGAMVSILLSQPAR----ESDRAHRVR 297 (542)
T ss_pred cCHHHHHHHH-HHHHHHHcCceEEeeCC-----CCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCc----cccccCceE
Confidence 9999999865 47899999999998763 6899999999999999999999999998876543 334567899
Q ss_pred EEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcc
Q psy8076 398 YLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRA 477 (737)
Q Consensus 398 ~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~ 477 (737)
.++.|| +++++.+++.+.++.++++.||+||++..++.. .....+ +++|.|++++. ++
T Consensus 298 ~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~-----~~~~~~-~~vG~~~~~~~-----~~--------- 355 (542)
T PRK06155 298 VALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVT-----HGSQRP-GSMGRLAPGFE-----AR--------- 355 (542)
T ss_pred EEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCC-----CCCCCC-CCcCccCCCce-----EE---------
Confidence 877665 578899999999999999999999998765432 122334 67888888877 77
Q ss_pred ccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeee
Q psy8076 478 HCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYD 557 (737)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~ 557 (737)
|+|+++++++.|+.|||+++|+.|.+++.||+++++.+.+.+ .+|||+
T Consensus 356 -----------------------------i~d~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~---~~~~~~ 403 (542)
T PRK06155 356 -----------------------------VVDEHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW---RNLWFH 403 (542)
T ss_pred -----------------------------EECCCCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhh---cCCcEe
Confidence 999999999999999999999865579999999999887765 279999
Q ss_pred cCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccc
Q psy8076 558 TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSG 637 (737)
Q Consensus 558 TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~ 637 (737)
|||+|++++||+++|+||.||+||++|.+|+|.|||++|.+||+|.+++|++++++..++.+.+++++..+
T Consensus 404 TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~--------- 474 (542)
T PRK06155 404 TGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDG--------- 474 (542)
T ss_pred ccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCC---------
Confidence 99999999999999999999999999999999999999999999999999999988778888888887654
Q ss_pred cccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHH
Q psy8076 638 LIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSI 717 (737)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l 717 (737)
. .....+++++++++++.+++|..++++++||+|++||++|++|
T Consensus 475 ---~---------------------------------~~~~~~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~l 518 (542)
T PRK06155 475 ---T---------------------------------ALEPVALVRHCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVL 518 (542)
T ss_pred ---C---------------------------------CCCHHHHHHHHHhhCcCccCCcEEEEeccCCCCcccceeHHHH
Confidence 1 1124678999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCchhh
Q psy8076 718 VDMARNKPLRVRLV 731 (737)
Q Consensus 718 ~~~~~~~~~~~~~~ 731 (737)
++++...+...+..
T Consensus 519 ~~~~~~~~~~~~~~ 532 (542)
T PRK06155 519 REQGVTADTWDREA 532 (542)
T ss_pred HhhccCCchhhhhh
Confidence 99887776655544
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=580.62 Aligned_cols=491 Identities=21% Similarity=0.270 Sum_probs=410.9
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAA-IGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
+.+.|+++++.+ ||++|+++.+ +.+||+||+++++++|+.|++ .|+++|++|+++++|++++++++|||+++
T Consensus 4 ~~~~~~~~a~~~-p~~~a~~~~~------~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~ 76 (496)
T PRK06839 4 IAYWIEKRAYLH-PDRIAIITEE------EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKV 76 (496)
T ss_pred HHHHHHHHHHHC-CCCeEEEECC------ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 457888999888 9999999875 999999999999999999985 79999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|+++.++.+++..++++++++++++++... ..+.+..... ....++.+..
T Consensus 77 G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~---------~~~~~~~~~~--~~~~~~~~~~-------------- 131 (496)
T PRK06839 77 ECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQ---------NMALSMQKVS--YVQRVISITS-------------- 131 (496)
T ss_pred CcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHH---------HHHHHhhhcc--CcceEEEecc--------------
Confidence 99999999999999999999999999999986421 2222211111 1122222221
Q ss_pred cHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEe
Q psy8076 238 LWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317 (737)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~ 317 (737)
+.+..... .....+..++++++++||||||| .||+|+++|++++..... ....++++.+|+++..
T Consensus 132 -~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG------------~PK~v~~s~~~l~~~~~~-~~~~~~~~~~d~~l~~ 196 (496)
T PRK06839 132 -LKEIEDRK-IDNFVEKNESASFIICYTSGTTG------------KPKGAVLTQENMFWNALN-NTFAIDLTMHDRSIVL 196 (496)
T ss_pred -hHhhhccC-CCCCCCCCCCCcEEEEeCCCCCC------------CCcEEEEEhHHHHHHHHH-HHHHcCCCCCCeEEEe
Confidence 12222111 11223456689999999999999 999999999886554443 3345688899999999
Q ss_pred cccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCcc
Q psy8076 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLR 397 (737)
Q Consensus 318 ~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr 397 (737)
+|++|..++...++.++..|+++++.+ ..++..+++.++++++|++.++|++++.+...... ...+++++|
T Consensus 197 ~p~~~~~g~~~~~~~~l~~g~~~~~~~-----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~~~~lr 267 (496)
T PRK06839 197 LPLFHIGGIGLFAFPTLFAGGVIIVPR-----KFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKF----ETTNLQSVR 267 (496)
T ss_pred eCCcchhhHHHHHHHHHhcCcEEEEcc-----CCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCccc----ccCCCcccc
Confidence 999999997776788999999998865 36899999999999999999999999999886543 345688999
Q ss_pred EEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcc
Q psy8076 398 YLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRA 477 (737)
Q Consensus 398 ~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~ 477 (737)
.+++||+++++++.+++.+. +.++++.||+||++..++.... ....... +++|+|++++. ++
T Consensus 268 ~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~--~~~~~~~-~~~G~p~~~~~-----~~--------- 329 (496)
T PRK06839 268 WFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFMLSE--EDARRKV-GSIGKPVLFCD-----YE--------- 329 (496)
T ss_pred eEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEeccc--ccccccC-CCCcccCCCce-----EE---------
Confidence 99999999999999999876 8999999999999865433221 1222333 78899998888 77
Q ss_pred ccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeee
Q psy8076 478 HCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYD 557 (737)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~ 557 (737)
|+|++++.++.|+.|||+|+|+ .++.||+++++.+...+ .+|||+
T Consensus 330 -----------------------------i~d~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~~---~~g~~~ 374 (496)
T PRK06839 330 -----------------------------LIDENKNKVEVGEVGELLIRGP---NVMKEYWNRPDATEETI---QDGWLC 374 (496)
T ss_pred -----------------------------EECCCcCCCCCCCceEEEEECC---CcchhhcCChHHHHHHH---cCCCee
Confidence 9999999999999999999999 89999999998877654 278999
Q ss_pred cCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccc
Q psy8076 558 TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSG 637 (737)
Q Consensus 558 TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~ 637 (737)
|||+++++++|++++.||.||+||++|.+|+|.|||++|.++|+|.+++|++++++..++.++++|+.+++
T Consensus 375 TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~--------- 445 (496)
T PRK06839 375 TGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSS--------- 445 (496)
T ss_pred ecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCC---------
Confidence 99999999999999999999999999999999999999999999999999999998889999999998765
Q ss_pred cccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHH
Q psy8076 638 LIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSI 717 (737)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l 717 (737)
. ....++|++++++.|+.+++|..+++++++|+|++||++|+.|
T Consensus 446 ---~---------------------------------~~~~~~l~~~~~~~l~~~~~P~~~~~v~~~P~t~~GKi~r~~l 489 (496)
T PRK06839 446 ---S---------------------------------VLIEKDVIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQL 489 (496)
T ss_pred ---C---------------------------------CCCHHHHHHHHHhhCcCCCCCcEEEEeccCCCCccccccHHHH
Confidence 1 0124679999999999999999999999999999999999999
Q ss_pred HHHHcC
Q psy8076 718 VDMARN 723 (737)
Q Consensus 718 ~~~~~~ 723 (737)
+++..+
T Consensus 490 ~~~~~~ 495 (496)
T PRK06839 490 VNQLKS 495 (496)
T ss_pred HHHhhc
Confidence 998764
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-66 Score=588.11 Aligned_cols=505 Identities=23% Similarity=0.297 Sum_probs=412.5
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
.+.+++++++..+ |+++|+++.++..+..+.+||+||+++++++|++|.++|+++|++|+++++|++++++++|||+++
T Consensus 23 ~~~~~~~~~~~~~-p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~ 101 (538)
T TIGR03208 23 TINDHFDAAVANC-PDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARI 101 (538)
T ss_pred cHHHHHHHHHHHC-CCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 3678889999888 999999875433334579999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|++|.++.+++.++++.++++++++++.... ........+.....+ ....+++.... ...
T Consensus 102 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~----------~~~ 166 (538)
T TIGR03208 102 GAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRG----FDHAAMARELQSKLP-ALRQVVVIDGD----------GDD 166 (538)
T ss_pred CEEEeccCcccCHHHHHHHHHhcCCeEEEEcccccc----ccHHHHHHHHhccCC-cceEEEEecCC----------CCc
Confidence 999999999999999999999999999999875321 111222223222233 33455554321 011
Q ss_pred cHHHHHhhcC----C-----CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcC
Q psy8076 238 LWDDALAQRL----S-----HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNM 308 (737)
Q Consensus 238 ~~~~~~~~~~----~-----~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~ 308 (737)
.+...+.... . .......++++++++||||||| .||||+++|++++..... ....+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG------------~PK~v~~s~~~~~~~~~~-~~~~~~~ 233 (538)
T TIGR03208 167 SFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTG------------EPKGVMHTANTLFSNIHP-YAERLEL 233 (538)
T ss_pred CHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCC------------CCcEEEeehHHHHHHHHH-HHhhcCC
Confidence 2222221100 0 0112356799999999999999 999999999886665554 4455788
Q ss_pred CCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccc
Q psy8076 309 GQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLG 388 (737)
Q Consensus 309 ~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~ 388 (737)
+.+|++++.+|++|..++...++.++..|+++++.+ ..++..+++.++++++|++.++|+++..+......
T Consensus 234 ~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~-----~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~---- 304 (538)
T TIGR03208 234 GGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQD-----IWNPARAAELIRETGVTFTMASTPFLTDLCRAVKE---- 304 (538)
T ss_pred CCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecC-----ccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhc----
Confidence 899999999999999988777899999999999875 36899999999999999999999999988765432
Q ss_pred cCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceee
Q psy8076 389 AQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIV 468 (737)
Q Consensus 389 ~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~ 468 (737)
...+++++|.+++||+++++++.+++.+.++++++|.||+||++...+.... ....... .++|+|++|+. ++
T Consensus 305 ~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~--~~~~~~~-~~~G~~~~g~~-----v~ 376 (538)
T TIGR03208 305 SGAPVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPD--DALEKAS-TTDGRPLPGVE-----VK 376 (538)
T ss_pred cCCCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCcc--cchhhcc-CcccccCCCCE-----EE
Confidence 2346789999999999999999999999899999999999999865543321 1111112 57788888877 77
Q ss_pred eeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhh
Q psy8076 469 MLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIY 548 (737)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~ 548 (737)
|+|++|++++.|+.|||+|+|+ +++.||+++++.+..
T Consensus 377 --------------------------------------i~~~~~~~~~~g~~Gel~v~g~---~~~~gy~~~~~~~~~-- 413 (538)
T TIGR03208 377 --------------------------------------VIDANGAKLSQGETGRLLVRGC---SNFGGYLKRPHLNST-- 413 (538)
T ss_pred --------------------------------------EECCCCCCCcCCCCcEEEEecC---cccccccCCcccccc--
Confidence 9999999999999999999999 899999999876542
Q ss_pred ccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecC
Q psy8076 549 FTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRI 628 (737)
Q Consensus 549 ~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~ 628 (737)
..+|||+|||+|++|++|+++++||.||+||++|++|+|.|||++|.+||+|.+++|++.++...++.+++++++..+
T Consensus 414 --~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~ 491 (538)
T TIGR03208 414 --DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPG 491 (538)
T ss_pred --cCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCC
Confidence 247899999999999999999999999999999999999999999999999999999999988888899999998764
Q ss_pred CCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHH-hcCCceeeeeEEEcCCCCCC
Q psy8076 629 PLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVRE-AIGPIAAFKLSTSVTGLPRT 707 (737)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~lP~t 707 (737)
. ....+++++++++ +++.+++|..+++++++|+|
T Consensus 492 ------------~---------------------------------~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~iP~t 526 (538)
T TIGR03208 492 ------------C---------------------------------TLDFAAMVAFLKAQKVALQYIPERLEVVDALPAT 526 (538)
T ss_pred ------------C---------------------------------CCCHHHHHHHHHhcchhhccCCcEEEEeccCCCC
Confidence 1 0123568888885 79999999999999999999
Q ss_pred CCchhhHHHHH
Q psy8076 708 RSGKTARKSIV 718 (737)
Q Consensus 708 ~sGKi~R~~l~ 718 (737)
++||++|+.|+
T Consensus 527 ~~gKv~r~~L~ 537 (538)
T TIGR03208 527 PAGKIQKFRLR 537 (538)
T ss_pred CccccchHhhc
Confidence 99999999986
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-66 Score=589.24 Aligned_cols=510 Identities=21% Similarity=0.267 Sum_probs=400.2
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
.+.+.|.++++++ |+++|+++.+. .+.+||+||+++++++|+.|.+.|+++|++|+++++|++++++++|||+++
T Consensus 15 ~~~~~l~~~a~~~-p~~~a~~~~~~----~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~ 89 (540)
T PRK05857 15 TVLDRVFEQARQQ-PEAIALRRCDG----TSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKL 89 (540)
T ss_pred chHHHHHHHHhhC-CCcEEEeecCC----CceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 4678888888888 99999987541 367999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|+++.++.+++.++++.++++++++++....... .+.+.. . ... .+.++..... ..
T Consensus 90 G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~------~~~~~~---~-~~~-~~~~~~~~~~--------~~ 150 (540)
T PRK05857 90 GAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASS------AVPEAL---H-SIP-VIAVDIAAVT--------RE 150 (540)
T ss_pred CeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccc------cccccc---c-ccc-eeEeeccccc--------cc
Confidence 999999999999999999999999999999875421110 011100 0 111 2222211000 00
Q ss_pred cHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHH---hhhhcCCCCcEE
Q psy8076 238 LWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTM---SVIYNMGQDDVW 314 (737)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~---~~~~~~~~~d~~ 314 (737)
+.+..............++++++++||||||| .||||+++|++++.+..... ...++...++++
T Consensus 151 -~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (540)
T PRK05857 151 -SEHSLDAASLAGNADQGSEDPLAMIFTSGTTG------------EPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETT 217 (540)
T ss_pred -ccccccccccccccCCCCCCeEEEEeCCCCCC------------CCCeEEEechhhhhhhHHhhhccccccccccCcee
Confidence 00000000011123356789999999999999 99999999998765432211 122456678899
Q ss_pred EEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCC
Q psy8076 315 WTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTD 394 (737)
Q Consensus 315 l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~ 394 (737)
+..+|++|..++.+ .+.++..|+++++.+ .++..+++.|+++++|+++++|++++.|.+.... ...+++
T Consensus 218 ~~~~p~~h~~~l~~-~~~~l~~G~~~v~~~------~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~----~~~~~~ 286 (540)
T PRK05857 218 YSPLPATHIGGLWW-ILTCLMHGGLCVTGG------ENTTSLLEILTTNAVATTCLVPTLLSKLVSELKS----ANATVP 286 (540)
T ss_pred eecCCccccchHHH-HHHHhhcceeEEecC------CChhHHHHHHHhcCcceEEeChHHHHHHHhcccc----CCCcCc
Confidence 99999999999754 788899999887632 4678999999999999999999999999876432 345788
Q ss_pred CccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCC-CCCCCCCccCCCcCCCCCCcceeeeeccc
Q psy8076 395 SLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQH-DTVPPKYSTGLPFPGYDGKYVNIVMLNWL 473 (737)
Q Consensus 395 ~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~-~~~~~~~~~G~p~~g~~~~~~~~~~~~~~ 473 (737)
++|.+++||++++....+++ +.++.++++.||+||++............ ...++ +++|+|++|++ ++
T Consensus 287 ~lr~~~~gG~~~~~~~~~~~-~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~-~~~G~~~~g~~-----v~----- 354 (540)
T PRK05857 287 SLRLVGYGGSRAIAADVRFI-EATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEA-GAVGRPYPGVD-----VY----- 354 (540)
T ss_pred cceEEEEcCccCCchhHHHH-HHhCCeeecccCCCcCCceeeeccccccccccccc-CCcCcccCCcE-----EE-----
Confidence 99999999999998887644 56799999999999998543322111000 11233 67888888877 77
Q ss_pred cCccccccccccccccCCCCCCCCcccccceEEEEcCCCCc------cCCCcceEEEEecCCCCCcccccccChhhhHHh
Q psy8076 474 DGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSE------CEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKI 547 (737)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~------~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~ 547 (737)
|+|+++.. ++.|+.|||+|+|| +++.|||++++.+.+.
T Consensus 355 ---------------------------------i~d~~~~~~~~~~~~~~~~~Gel~v~g~---~~~~GY~~~~~~t~~~ 398 (540)
T PRK05857 355 ---------------------------------LAATDGIGPTAPGAGPSASFGTLWIKSP---ANMLGYWNNPERTAEV 398 (540)
T ss_pred ---------------------------------EECccccCccccccCCCCCcceEEEeCc---chhhhhhCCccchhhh
Confidence 99987763 24578999999999 8999999999988877
Q ss_pred hccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeec
Q psy8076 548 YFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKR 627 (737)
Q Consensus 548 ~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~ 627 (737)
|. +|||+|||+|++|++|++++.||.||+||++|++|+|.|||++|..||+|.+++|+++++...++.++++++..+
T Consensus 399 ~~---~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~ 475 (540)
T PRK05857 399 LI---DGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASA 475 (540)
T ss_pred cC---CCceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCC
Confidence 63 789999999999999999999999999999999999999999999999999999999998877888888887654
Q ss_pred CCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCC
Q psy8076 628 IPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRT 707 (737)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t 707 (737)
. .. .....++.+.+.+.+++.+++|++|..++++++||+|
T Consensus 476 ~------------~~----------------------------~~~~~~l~~~~~~~~~~~l~~~~~P~~v~~~~~iP~t 515 (540)
T PRK05857 476 E------------LD----------------------------ESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRT 515 (540)
T ss_pred C------------CC----------------------------hhhHHHHHHHHHHHHHhhhccccCCeEEEEhhcCCCC
Confidence 3 10 0112346677888888999999999999999999999
Q ss_pred CCchhhHHHHHHHHcCCCC
Q psy8076 708 RSGKTARKSIVDMARNKPL 726 (737)
Q Consensus 708 ~sGKi~R~~l~~~~~~~~~ 726 (737)
++||++|++|++.+.++..
T Consensus 516 ~~GKi~r~~l~~~~~~~~~ 534 (540)
T PRK05857 516 QSGKVMRASLAAAATADKA 534 (540)
T ss_pred CCcceeHHHHHHhhhhccc
Confidence 9999999999999987654
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-66 Score=602.63 Aligned_cols=537 Identities=15% Similarity=0.165 Sum_probs=398.7
Q ss_pred chhHHHHHHhhhhhccCCCceEEEEe---CCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHH
Q psy8076 75 EINACYNAIDRHVERGMAKKVALIHD---SPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSM 151 (737)
Q Consensus 75 ~~n~~~~~l~~~~~~~~pd~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~ 151 (737)
...++.++|+++++++ |+++|+.+. +...+.++.+||+||+++++++|++|.++|+++||+|+|+++|++||++++
T Consensus 41 ~~~t~~~~l~~~~~~~-p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~ 119 (660)
T PLN02861 41 DIDSPWQFFSDAVKKY-PNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAM 119 (660)
T ss_pred CCCCHHHHHHHHHHhC-CCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 3456789999999998 999999763 212345678999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEeccccccc-c
Q psy8076 152 LATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEA-E 230 (737)
Q Consensus 152 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~-~ 230 (737)
|||+++|+++||+++.++.+++.+++++++++++|+++.. ...+.......+..++.++.+........ .
T Consensus 120 lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~---------~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~ 190 (660)
T PLN02861 120 EACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESK---------ISSILSCLPKCSSNLKTIVSFGDVSSEQKEE 190 (660)
T ss_pred HHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHH---------HHHHHHhhhhCCCCCEEEEEECCCChhhhhh
Confidence 9999999999999999999999999999999999997531 22233333333324566666543210000 0
Q ss_pred --cCCCCcccHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhc
Q psy8076 231 --LTPGYDILWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYN 307 (737)
Q Consensus 231 --~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~ 307 (737)
........+.++...... ....+..++++++|+||||||| .||||+++|++++.+... ....++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG------------~PKGV~lth~~l~~~~~~-~~~~~~ 257 (660)
T PLN02861 191 AEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTG------------EPKGVILTNRAIIAEVLS-TDHLLK 257 (660)
T ss_pred hhcCCcEEEEHHHHHHhCcccCCCCccCCCceEEEEecCCCCC------------CCCEEEEecHHHHHHHHH-HHhccc
Confidence 000112345555543221 1223456899999999999999 999999999987766543 223232
Q ss_pred -----CCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcC
Q psy8076 308 -----MGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRED 382 (737)
Q Consensus 308 -----~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~ 382 (737)
+..+|++++++|++|+++... .+.+++.|++++++. .++..+++.|+++++|+++++|++++.|....
T Consensus 258 ~~~~~~~~~d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~------~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~ 330 (660)
T PLN02861 258 VTDRVATEEDSYFSYLPLAHVYDQVI-ETYCISKGASIGFWQ------GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGI 330 (660)
T ss_pred cccccCCCCCEEEEECcHHHHHHHHH-HHHHHHhCCEEEEeC------CCHHHHHHHHHHhCCcEEeechHHHHHHHHHH
Confidence 468899999999999999765 455799999998874 47889999999999999999999999886410
Q ss_pred C-----------------------------C----CccccCC-------CC-CCccEEEeecCCCCHHHHHHHHHhcCC-
Q psy8076 383 K-----------------------------D----STLGAQY-------ST-DSLRYLFVAGEHCDHETKNWAEKSFNV- 420 (737)
Q Consensus 383 ~-----------------------------~----~~~~~~~-------~l-~~Lr~i~~gGe~l~~~~~~~~~~~~~~- 420 (737)
. . ....... .+ ++||.+++||+++++++.+ |.+.++.
T Consensus 331 ~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~~~~~~ 409 (660)
T PLN02861 331 MQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLRVTSCS 409 (660)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 0 0 0000000 12 5899999999999999855 5556664
Q ss_pred cccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCccc
Q psy8076 421 TMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHF 500 (737)
Q Consensus 421 ~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (737)
.+++.||+||+++.++.... ....++ +++|+|+++++ ++
T Consensus 410 ~l~~~YG~TE~~~~~~~~~~---~~~~~~-gsvG~p~p~~e-----v~-------------------------------- 448 (660)
T PLN02861 410 VLSQGYGLTESCGGCFTSIA---NVFSMV-GTVGVPMTTIE-----AR-------------------------------- 448 (660)
T ss_pred CeeEecchhhhhhceeeccc---ccCCCC-CCccCccCceE-----EE--------------------------------
Confidence 79999999999866554321 112233 78899998888 77
Q ss_pred ccceEEEEc--CCC-CccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecC
Q psy8076 501 TSVEVRIIR--NDG-SECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDD 577 (737)
Q Consensus 501 ~~~~~~Ivd--~~g-~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~d 577 (737)
|+| ++| ..++.+..|||+|+|| +++.|||++++.|.+.| . +|||+|||+|++|+||+|+|+||+|
T Consensus 449 ------i~d~~~~g~~~~~~~~~GEi~vrGp---~v~~GY~~~pe~T~~~f-~--dGw~~TGDlg~~d~dG~l~i~GR~k 516 (660)
T PLN02861 449 ------LESVPEMGYDALSDVPRGEICLRGN---TLFSGYHKRQDLTEEVL-I--DGWFHTGDIGEWQPNGAMKIIDRKK 516 (660)
T ss_pred ------EEEccccCcccCCCCCceeEEEcCC---cccccccCCHHHHHhhh-h--ccCcccCceEEECCCCcEEEEeccc
Confidence 887 334 3445567899999999 99999999999998887 2 7999999999999999999999999
Q ss_pred CeEee-CcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccc
Q psy8076 578 DVINV-AGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIR 656 (737)
Q Consensus 578 d~Ik~-~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (737)
|+||+ +|++|+|.|||++|.+||.|.+|+|+|.+ .++.++|+|++..+.+..+......
T Consensus 517 d~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~---~~~~~~A~vv~~~~~l~~~~~~~~~----------------- 576 (660)
T PLN02861 517 NIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNS---FESFLVAVVVPDRQALEDWAANNNK----------------- 576 (660)
T ss_pred cceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecC---CcceeEEEEEcCHHHHHHHHHHcCC-----------------
Confidence 99997 69999999999999999999999999986 3457999999875422221100000
Q ss_pred cccCCCCCCcccccCCChHHHHHHHHHHHH----H-hcCCceeeeeEEEcC-CC-----CCCCCchhhHHHHHHHHcC
Q psy8076 657 VLIKPYGPISSIYCTRSDEEIGKELKELVR----E-AIGPIAAFKLSTSVT-GL-----PRTRSGKTARKSIVDMARN 723 (737)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~----~-~l~~~~~p~~~~~v~-~l-----P~t~sGKi~R~~l~~~~~~ 723 (737)
. ...............+.+.++ + .++.+..++.+.+.+ .| .+|+++|+.|+.+.+.|.+
T Consensus 577 -------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~ 646 (660)
T PLN02861 577 -------T-GDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKD 646 (660)
T ss_pred -------C-CCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHH
Confidence 0 000000001122233334443 3 489999999999865 56 8999999999999998865
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-66 Score=598.44 Aligned_cols=537 Identities=15% Similarity=0.129 Sum_probs=401.8
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCC---CCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHH
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSP---VTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLAT 154 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~---~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~ 154 (737)
.+.++|+++++.+ |+++|+++.+. ..+..+.+||+||+++++++|++|.+. +++||+|+++++|++++++++|||
T Consensus 22 ~l~~~l~~~a~~~-~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~lA~ 99 (631)
T PRK07769 22 NLVRHVERWAKVR-GDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFFGA 99 (631)
T ss_pred CHHHHHHHHHHhC-CCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHHHH
Confidence 4678899998888 99999997531 123357899999999999999999987 899999999999999999999999
Q ss_pred HHcCCEEEec-CCCCC--HHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCC-CCCeEEEEecccccccc
Q psy8076 155 VRLGAIHSVV-FGGFA--ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSC-KPDYCIIFQRRCVEEAE 230 (737)
Q Consensus 155 ~~~G~~~vpl-~~~~~--~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~viv~~~~~~~~~~ 230 (737)
+++|++++|+ ++..+ .+++.+++++++++++|+++.. ...+.+.....+. ....++.+... .
T Consensus 100 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~--~--- 165 (631)
T PRK07769 100 LYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDS---------AEGVRKFFRARPAKERPRVIAVDAV--P--- 165 (631)
T ss_pred HHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHH---------HHHHHHHHhhccccccceEEEcccc--c---
Confidence 9999999999 55554 6889999999999999998642 2222222222221 11223322210 0
Q ss_pred cCCCCcccHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCC
Q psy8076 231 LTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQ 310 (737)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~ 310 (737)
+... ......+..++++++|+||||||| .||||+++|++++.+... +...+++..
T Consensus 166 ----------~~~~--~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~sh~~l~~~~~~-~~~~~~~~~ 220 (631)
T PRK07769 166 ----------DEVG--ATWVPPEANEDTIAYLQYTSGSTR------------IPAGVQITHLNLPTNVLQ-VIDALEGQE 220 (631)
T ss_pred ----------cccc--cccCCCCCCCCCeEEEEeCCCCCC------------CCcEEEEcHHHHHHHHHH-HHHHcCCCC
Confidence 0000 001112356789999999999999 999999999887665544 445678899
Q ss_pred CcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCC---cEEeecHHHHHHHHHcCCCCc-
Q psy8076 311 DDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKV---NGLFTAPTALRVIRREDKDST- 386 (737)
Q Consensus 311 ~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~v---t~l~~~P~~~~~l~~~~~~~~- 386 (737)
+|++++++|++|++|+.. ++.+++.|++++++..... ..++..+++.++++++ +++.++|+++..+........
T Consensus 221 ~d~~l~~~Pl~h~~gl~~-~~~~~~~G~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ 298 (631)
T PRK07769 221 GDRGVSWLPFFHDMGLIT-VLLPALLGHYITFMSPAAF-VRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKD 298 (631)
T ss_pred cceEEEeCCCcCchhhHH-HHHHHhhCCeEEEEChHHH-HhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchh
Confidence 999999999999999765 5667778999988753211 2388999999999986 789999998877654311100
Q ss_pred cccCCCCCCccEEEeecCCCCHHHHHHHHHhcC------CcccccccccccccccccccccCCCCCCCCCCccCCCcCCC
Q psy8076 387 LGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFN------VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGY 460 (737)
Q Consensus 387 ~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~------~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~ 460 (737)
.....++++||.+++||+++++++.++|.+.|+ ..+++.||+||++..++..... ..... ..++....
T Consensus 299 ~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~---~~~~~-~~~~~~~~-- 372 (631)
T PRK07769 299 GEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMD---EEPTV-IYVDRDEL-- 372 (631)
T ss_pred cccCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCC---CCceE-EEEcHHHH--
Confidence 002457899999999999999999999998873 2589999999998655543210 00000 00000000
Q ss_pred CCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCccccccc
Q psy8076 461 DGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYK 539 (737)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~ 539 (737)
.....+.+..+ .+..+..+..|.+.++++++|+| ++|+++|.|+.|||+|+|| +++.|||+
T Consensus 373 --------------~~~~~~~v~~~-~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp---~v~~GY~~ 434 (631)
T PRK07769 373 --------------NAGRFVEVPAD-APNAVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGN---NIGTGYWG 434 (631)
T ss_pred --------------hCCCeEecCCC-CCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecCC---CccccccC
Confidence 00001111111 12223334567777888888999 5799999999999999999 99999999
Q ss_pred ChhhhHHhhcc---------------CCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhc-CCCcc
Q psy8076 540 APQRFMKIYFT---------------KFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLS-HPDVG 603 (737)
Q Consensus 540 ~~~~~~~~~~~---------------~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~-~p~V~ 603 (737)
+++.+.+.|.. ..+|||+|||+|+++ ||+|+|+||.||+||++|++|+|.|||++|.+ ||.|.
T Consensus 435 ~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~ 513 (631)
T PRK07769 435 KPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALR 513 (631)
T ss_pred ChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhcccccc
Confidence 99999888753 135899999999995 99999999999999999999999999999996 89999
Q ss_pred e--eEEecccC-------------------CCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCC
Q psy8076 604 D--TAVIGVPE-------------------PTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPY 662 (737)
Q Consensus 604 ~--a~vv~~~~-------------------~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (737)
+ ++|+++++ +..++.++++|+++++ .
T Consensus 514 ~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~------------~--------------------- 560 (631)
T PRK07769 514 TGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPG------------A--------------------- 560 (631)
T ss_pred CCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCc------------c---------------------
Confidence 8 99999988 5578889999998764 1
Q ss_pred CCCcccccCCChHHHHHHHHHHHHHhcCC-ce-eeeeEEEcC--CCCCCCCchhhHHHHHHHHcCCCC
Q psy8076 663 GPISSIYCTRSDEEIGKELKELVREAIGP-IA-AFKLSTSVT--GLPRTRSGKTARKSIVDMARNKPL 726 (737)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~-~p~~~~~v~--~lP~t~sGKi~R~~l~~~~~~~~~ 726 (737)
.....++|.++++++|+. ++ .|+.+++++ +||+|++|||+|++|++.+.++.+
T Consensus 561 -----------~~~~~~~l~~~~~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~~~~ 617 (631)
T PRK07769 561 -----------HKLDPQPIADDIRAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLDGSL 617 (631)
T ss_pred -----------ccccHHHHHHHHHHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHcCCC
Confidence 012356788888888885 55 488888886 799999999999999999887654
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-65 Score=581.50 Aligned_cols=509 Identities=23% Similarity=0.335 Sum_probs=415.5
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcC
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 158 (737)
+.++|.++++++ |+++|+++.+ +.+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|
T Consensus 9 ~~~~~~~~a~~~-p~~~a~~~~~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G 81 (528)
T PRK07470 9 LAHFLRQAARRF-PDRIALVWGD------RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLG 81 (528)
T ss_pred HHHHHHHHHHHC-CCceEEEECC------ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCC
Confidence 567888888888 9999999865 899999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCccc
Q psy8076 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL 238 (737)
Q Consensus 159 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~ 238 (737)
++++|+++.++.+++..+++++++++++++.... ..+.......+ ....++.+... .....
T Consensus 82 ~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~---------~~~~~ 142 (528)
T PRK07470 82 AVWVPTNFRQTPDEVAYLAEASGARAMICHADFP---------EHAAAVRAASP-DLTHVVAIGGA---------RAGLD 142 (528)
T ss_pred eEEEecCccCCHHHHHHHHHhcCceEEEEcchhH---------HHHHHHHhhCC-cCceEEEeCCC---------ccccc
Confidence 9999999999999999999999999999987532 22222222222 33444444321 01234
Q ss_pred HHHHHhhcCC--CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhh-cCCCCcEEE
Q psy8076 239 WDDALAQRLS--HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIY-NMGQDDVWW 315 (737)
Q Consensus 239 ~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~-~~~~~d~~l 315 (737)
+.++...... .......++++++++||||||| .||||+++|+++...........+ +++.+|+++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l 210 (528)
T PRK07470 143 YEALVARHLGARVANAAVDHDDPCWFFFTSGTTG------------RPKAAVLTHGQMAFVITNHLADLMPGTTEQDASL 210 (528)
T ss_pred HHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCC------------CCcEEEEehhhHHHHHHHHHHHhccCCCcccEEE
Confidence 5554433211 2233467789999999999999 999999999886544433222222 567889999
Q ss_pred EecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCC
Q psy8076 316 TASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395 (737)
Q Consensus 316 ~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~ 395 (737)
..+|++|..++.. + ..++.|++.++++.. ..++..+++.|+++++|++.++|++++.+.+.... ...++++
T Consensus 211 ~~~p~~~~~~~~~-~-~~~~~g~~~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~~~~ 281 (528)
T PRK07470 211 VVAPLSHGAGIHQ-L-CQVARGAATVLLPSE---RFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAV----DRYDHSS 281 (528)
T ss_pred EeccchhHHHHHH-H-HHHhcCceEEEeccc---CcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCc----CCCCCcc
Confidence 9999999988643 3 467788888777643 35899999999999999999999999999876442 3456789
Q ss_pred ccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCC---C-CCCCCCCccCCCcCCCCCCcceeeeec
Q psy8076 396 LRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQ---H-DTVPPKYSTGLPFPGYDGKYVNIVMLN 471 (737)
Q Consensus 396 Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~---~-~~~~~~~~~G~p~~g~~~~~~~~~~~~ 471 (737)
+|.+++||++++++..+++.+.++..+++.||+||+++.++....... . ..... +++|.|++|+. ++
T Consensus 282 lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~~~g~~-----~~--- 352 (528)
T PRK07470 282 LRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARI-GTCGFERTGME-----VQ--- 352 (528)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhcccccccccee-eccCcccCCcE-----EE---
Confidence 999999999999999999998899999999999999876554321000 0 01122 56677777766 65
Q ss_pred cccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccC
Q psy8076 472 WLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTK 551 (737)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~ 551 (737)
|+|++|++++.|+.|||+++|+ .++.||+++++.+.+.+
T Consensus 353 -----------------------------------i~d~~~~~~~~g~~Gel~i~~~---~~~~gy~~~~~~~~~~~--- 391 (528)
T PRK07470 353 -----------------------------------IQDDEGRELPPGETGEICVIGP---AVFAGYYNNPEANAKAF--- 391 (528)
T ss_pred -----------------------------------EECCCCCCCCCCCceEEEEeCC---ccchhhcCCHHHHHhhh---
Confidence 9999999999999999999999 99999999998887765
Q ss_pred CCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCC
Q psy8076 552 FPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLD 631 (737)
Q Consensus 552 ~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~ 631 (737)
.+|||+|||+|++++||++++.||.||+||++|++|+|.|||++|.++|.|.+++|++.+++..++.++++++..+.
T Consensus 392 ~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~--- 468 (528)
T PRK07470 392 RDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDG--- 468 (528)
T ss_pred cCCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCC---
Confidence 27899999999999999999999999999999999999999999999999999999999998888888888887654
Q ss_pred cCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCch
Q psy8076 632 KMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGK 711 (737)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGK 711 (737)
. ....+++++++++.|+.+++|..++++++||+|++||
T Consensus 469 ---------~---------------------------------~~~~~~~~~~l~~~l~~~~~P~~~~~~~~iP~t~~GK 506 (528)
T PRK07470 469 ---------A---------------------------------PVDEAELLAWLDGKVARYKLPKRFFFWDALPKSGYGK 506 (528)
T ss_pred ---------C---------------------------------CCCHHHHHHHHHHhhhcCCCCcEEEEeccCCCCCccc
Confidence 1 0124679999999999999999999999999999999
Q ss_pred hhHHHHHHHHcCCCCCch
Q psy8076 712 TARKSIVDMARNKPLRVR 729 (737)
Q Consensus 712 i~R~~l~~~~~~~~~~~~ 729 (737)
++|+.|++++....+-++
T Consensus 507 i~r~~l~~~~~~~~~~~~ 524 (528)
T PRK07470 507 ITKKMVREELEERGLLDL 524 (528)
T ss_pred ccHHHHHHHHHhcccccc
Confidence 999999999887765443
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-65 Score=588.46 Aligned_cols=509 Identities=23% Similarity=0.278 Sum_probs=417.1
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++++++++++ |+++|+++.+ +.+||+||+++++++|+.|.++|+++||+|+++++|++++++++|||+++
T Consensus 33 ~l~~~~~~~~~~~-p~~~a~~~~~------~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~ 105 (573)
T PRK05605 33 TLVDLYDNAVARF-GDRPALDFFG------ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRL 105 (573)
T ss_pred CHHHHHHHHHHHC-CCCeEEEeCC------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 3678899999887 9999999875 78999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccc---------
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEE--------- 228 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~--------- 228 (737)
|++++|++|.++.+++.+++++++++++|+++... ..+.+..... ....++.+.......
T Consensus 106 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~ 174 (573)
T PRK05605 106 GAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVA---------PTVERLRRTT--PLETIVSVNMIAAMPLLQRLALRL 174 (573)
T ss_pred CcEEeecCcCCCHHHHHHHHhccCCcEEEechhhH---------HHHHhhhhcc--ccceeEeeeccccccccccccccc
Confidence 99999999999999999999999999999976521 1122211111 222333322110000
Q ss_pred -----------cccCCCCcccHHHHHhhcCC-----CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCc
Q psy8076 229 -----------AELTPGYDILWDDALAQRLS-----HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVG 292 (737)
Q Consensus 229 -----------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~ 292 (737)
..........|.++...... .......++++++++||||||| .||+|+++|+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PK~v~~s~~ 242 (573)
T PRK05605 175 PIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTG------------KPKGAQLTHR 242 (573)
T ss_pred ccccccccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCC------------CCcEEEEecH
Confidence 00011123455555443211 1122356789999999999999 9999999999
Q ss_pred hhHHHHHHHHhhhhcC-CCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeec
Q psy8076 293 GHIATLAWTMSVIYNM-GQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTA 371 (737)
Q Consensus 293 ~~~~~~~~~~~~~~~~-~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~ 371 (737)
+++.+.........++ ..++++++..|++|..|+...++.++..|+++++.+. .++..+++.|+++++|++.++
T Consensus 243 ~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~-----~~~~~~~~~l~~~~~t~~~~~ 317 (573)
T PRK05605 243 NLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPA-----PDIDLILDAMKKHPPTWLPGV 317 (573)
T ss_pred HHHHHHHHHHhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCC-----CCHHHHHHHHHHhCCEEEEch
Confidence 8776655322222223 3478999999999999877777888999999999763 689999999999999999999
Q ss_pred HHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCC
Q psy8076 372 PTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKY 451 (737)
Q Consensus 372 P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~ 451 (737)
|++++.|.+.... ...++++||.+++||+++++++.+++.+.++..+++.||+||+++.++.... .....+ +
T Consensus 318 P~~~~~l~~~~~~----~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~---~~~~~~-~ 389 (573)
T PRK05605 318 PPLYEKIAEAAEE----RGVDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPM---SDDRRP-G 389 (573)
T ss_pred HHHHHHHHhCccc----cCCCchhccEEEECCCcCCHHHHHHHHHHhCCCeecccccchhchhhhcCCc---ccCCcC-C
Confidence 9999999876543 3456789999999999999999999998889999999999999976655432 122334 6
Q ss_pred ccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCC--CCccCCCcceEEEEecCC
Q psy8076 452 STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRND--GSECEPHELGRIVVKLPL 529 (737)
Q Consensus 452 ~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~--g~~~~~g~~GEL~i~g~~ 529 (737)
++|.|++|+. ++ |+|++ +.+++.|+.|||+|+|+
T Consensus 390 ~~G~~~~~~~-----~~--------------------------------------i~d~~~~~~~~~~g~~Gel~v~~~- 425 (573)
T PRK05605 390 YVGVPFPDTE-----VR--------------------------------------IVDPEDPDETMPDGEEGELLVRGP- 425 (573)
T ss_pred ccccCCCCCE-----EE--------------------------------------EEcCCCCCccCCCCCeeEEEEecC-
Confidence 8899999888 77 99966 58999999999999999
Q ss_pred CCCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEec
Q psy8076 530 PPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIG 609 (737)
Q Consensus 530 ~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~ 609 (737)
.++.||+++++.+.+.|. +|||+|||+|+++++|++++.||.||+||++|++|+|.|||+++.+|+.|.+++|++
T Consensus 426 --~~~~gy~~~~~~~~~~~~---~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~ 500 (573)
T PRK05605 426 --QVFKGYWNRPEETAKSFL---DGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVG 500 (573)
T ss_pred --chhhhhcCChhHhhhccc---CCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEEEEe
Confidence 999999999998887663 579999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhc
Q psy8076 610 VPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAI 689 (737)
Q Consensus 610 ~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 689 (737)
++++..++.+++++++.++ . ....++|+++++++|
T Consensus 501 ~~~~~~~~~~~~~vv~~~~------------~---------------------------------~~~~~~l~~~~~~~l 535 (573)
T PRK05605 501 LPREDGSEEVVAAVVLEPG------------A---------------------------------ALDPEGLRAYCREHL 535 (573)
T ss_pred eecccCCeEEEEEEEECCC------------C---------------------------------CCCHHHHHHHHHHhC
Confidence 9988888899999988764 1 012478999999999
Q ss_pred CCceeeeeEEEcCCCCCCCCchhhHHHHHHHHcC
Q psy8076 690 GPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARN 723 (737)
Q Consensus 690 ~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~ 723 (737)
+.+++|..++++++||+|.+||++|++|++++.+
T Consensus 536 ~~~~~p~~i~~~~~iP~t~~GKi~r~~L~~~~~~ 569 (573)
T PRK05605 536 TRYKVPRRFYHVDELPRDQLGKVRRREVREELLE 569 (573)
T ss_pred ccccCCcEEEEeccCCCCCcccccHHHHHHHHHH
Confidence 9999999999999999999999999999998754
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-65 Score=580.88 Aligned_cols=499 Identities=21% Similarity=0.305 Sum_probs=408.5
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcC
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 158 (737)
+.++|+++++.+ |+++|+++.+ +.+||+||+++++++|..|.+.|+++|++|+++++|++++++++|||+++|
T Consensus 25 l~~~~~~~a~~~-p~~~a~~~~~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G 97 (527)
T TIGR02275 25 LTDILRDQAARY-PDAIAIICGN------RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLG 97 (527)
T ss_pred HHHHHHHHHHHC-CCceEEEeCC------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcC
Confidence 678899999887 9999999875 899999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCccc
Q psy8076 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL 238 (737)
Q Consensus 159 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~ 238 (737)
++++++++..+.+++.++++.++++++++++.... ..............+ ..+.+++..... ....
T Consensus 98 ~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------~~~~ 163 (527)
T TIGR02275 98 IAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSL----FDYDAFARQLQSKLP-TLRNIIVAGQTR---------VEAE 163 (527)
T ss_pred eEEeccccccCHHHHHHHHHhcCCcEEEEcCcccc----cchHHHHHHHHhhCC-cceEEEEecCCC---------Ccch
Confidence 99999999999999999999999999999865311 111122222222222 333444332110 0001
Q ss_pred HHHHHhhc-CCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEe
Q psy8076 239 WDDALAQR-LSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317 (737)
Q Consensus 239 ~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~ 317 (737)
........ .........++++++++||||||| .||||+++|+++..+... ....+.++.+|++++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PKgv~~s~~~~~~~~~~-~~~~~~~~~~d~~l~~ 230 (527)
T TIGR02275 164 LFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTG------------TPKLIPRTHNDYYYSVRR-SVEICWLTQQTRYLCA 230 (527)
T ss_pred hhHHhhCcCccccCCCCCCCccEEEEeCCCCCC------------CCceeeeehHHHHHHHHH-HHhhcCCCcCCEEEEC
Confidence 11111111 111223457799999999999999 999999999987766655 3456788999999999
Q ss_pred cccccccchhh-hhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCc
Q psy8076 318 SDMGWVVGHSY-ICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSL 396 (737)
Q Consensus 318 ~~~~~~~g~~~-~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~L 396 (737)
+|++|.+++.. .++.++..|+++++.+. +++..+++.++++++|++.++|++++.+.+.... ...+++++
T Consensus 231 ~P~~h~~~~~~~~~~~~l~~G~~~v~~~~-----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~----~~~~~~~l 301 (527)
T TIGR02275 231 LPAAHNYPLSSPGALGVFYAGGCVVLAPD-----PSPTDCFPLIERHKVTVTALVPPAVALWMQAASK----SRYDLSSL 301 (527)
T ss_pred CChHhhhhhhHHHHHHHHhcCCeEEECCC-----CCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccc----cCCCccce
Confidence 99999988654 47888999999988652 6789999999999999999999999998876543 34567899
Q ss_pred cEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcC-CCCCCcceeeeeccccC
Q psy8076 397 RYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFP-GYDGKYVNIVMLNWLDG 475 (737)
Q Consensus 397 r~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~-g~~~~~~~~~~~~~~~~ 475 (737)
|.+++||+++++++.+++.+.++.++++.||+||++...+... ....... .++|+|++ +.. ++
T Consensus 302 r~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~---~~~~~~~-~~~G~~~~~~~~-----v~------- 365 (527)
T TIGR02275 302 KLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLD---DPAEIIF-TTQGRPMSPDDE-----VR------- 365 (527)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCC---Ccccccc-ccCCCCCCCCce-----EE-------
Confidence 9999999999999999999999999999999999754332211 1112222 56788874 555 55
Q ss_pred ccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCe
Q psy8076 476 RAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGY 555 (737)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~ 555 (737)
|+|++|+++++|+.|||+++|+ .++.||+++++.+.+.+.. +||
T Consensus 366 -------------------------------i~d~~g~~~~~g~~Gei~v~g~---~~~~gY~~~~~~~~~~~~~--dg~ 409 (527)
T TIGR02275 366 -------------------------------VVDDHGNPVAPGETGMLLTRGP---YTFRGYYKAPEHNAAAFDA--EGF 409 (527)
T ss_pred -------------------------------EECCCCCCCCCCCceEEEecCC---ccchhhcCChhHhHhhcCc--CCC
Confidence 9999999999999999999999 8999999999998776633 789
Q ss_pred eecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCc
Q psy8076 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGF 635 (737)
Q Consensus 556 ~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~ 635 (737)
|+|||+|++++||++++.||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++++|++++.
T Consensus 410 ~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~------- 482 (527)
T TIGR02275 410 YYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDP------- 482 (527)
T ss_pred EEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCC-------
Confidence 9999999999999999999999999999999999999999999999999999999998888899999987654
Q ss_pred cccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHh-cCCceeeeeEEEcCCCCCCCCchhhH
Q psy8076 636 SGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREA-IGPIAAFKLSTSVTGLPRTRSGKTAR 714 (737)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~v~~lP~t~sGKi~R 714 (737)
. ....+|+++++++ ++.++.|..++++++||+|++||++|
T Consensus 483 -----~----------------------------------~~~~~l~~~l~~~~l~~~~~P~~i~~v~~iP~t~sGKv~r 523 (527)
T TIGR02275 483 -----A----------------------------------LKAAQLRRFLRERGLAEYKLPDRVEFIDSLPLTAVGKIDK 523 (527)
T ss_pred -----C----------------------------------CCHHHHHHHHHhCCCccccCCCEEEEeccCCCCCccceeH
Confidence 0 1246799999985 99999999999999999999999999
Q ss_pred HHHH
Q psy8076 715 KSIV 718 (737)
Q Consensus 715 ~~l~ 718 (737)
+.|+
T Consensus 524 ~~L~ 527 (527)
T TIGR02275 524 KALR 527 (527)
T ss_pred HhcC
Confidence 9874
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-65 Score=577.33 Aligned_cols=510 Identities=26% Similarity=0.362 Sum_probs=430.8
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|.++++.+ |+++|+.+.+ +.+||+||+++++++|+.|.+.|+++|++|+++++|+.++++++|||+++
T Consensus 7 ~l~~~l~~~~~~~-p~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~ 79 (521)
T PRK06187 7 TIGRILRHGARKH-PDKEAVYFDG------RRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKI 79 (521)
T ss_pred CHHHHHHHHHHHC-CCceEEEeCC------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 5789999999998 9999999987 67999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|+++.++.+++..+++.+++++++++.. ....+.......+ ..++++++...... .......
T Consensus 80 G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~ 146 (521)
T PRK06187 80 GAVLHPINIRLKPEEIAYILNDAEDRVVLVDSE---------FVPLLAAILPQLP-TVRTVIVEGDGPAA---PLAPEVG 146 (521)
T ss_pred CeEEEecccCCCHHHHHHHHHhcCCeEEEEcch---------HHHHHHHHhhccC-CccEEEEecCcccc---ccccccc
Confidence 999999999999999999999999999999875 3344445444444 45566665543111 1122345
Q ss_pred cHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEE
Q psy8076 238 LWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWT 316 (737)
Q Consensus 238 ~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~ 316 (737)
.+.++...... .......++++++++||||||| .||+|.++|+++...... ....++++.+|++++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG------------~PK~v~~t~~~l~~~~~~-~~~~~~~~~~d~~~~ 213 (521)
T PRK06187 147 EYEELLAAASDTFDFPDIDENDAAAMLYTSGTTG------------HPKGVVLSHRNLFLHSLA-VCAWLKLSRDDVYLV 213 (521)
T ss_pred cHHHHhhcCCccCCCCCCCccceEEEEECCCCCC------------CCceEEeehHHHHHHHHH-HHHhhCCCCCCEEEE
Confidence 55555544332 2233467789999999999999 999999999886655554 455789999999999
Q ss_pred ecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCc
Q psy8076 317 ASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSL 396 (737)
Q Consensus 317 ~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~L 396 (737)
.+|++|..++.. .+.++..|+++++.+. .++..+++.++++++|+++++|++++.|.+.... ...+++++
T Consensus 214 ~~~~~~~~~~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~----~~~~~~~l 283 (521)
T PRK06187 214 IVPMFHVHAWGL-PYLALMAGAKQVIPRR-----FDPENLLDLIETERVTFFFAVPTIWQMLLKAPRA----YFVDFSSL 283 (521)
T ss_pred eCCchHHhhHHH-HHHHHHhCCEEEecCC-----CCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCC----CccCcchh
Confidence 999999998765 4559999999999875 4899999999999999999999999999887654 34567899
Q ss_pred cEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCC--CCCCCCccCCCcCCCCCCcceeeeecccc
Q psy8076 397 RYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHD--TVPPKYSTGLPFPGYDGKYVNIVMLNWLD 474 (737)
Q Consensus 397 r~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~--~~~~~~~~G~p~~g~~~~~~~~~~~~~~~ 474 (737)
|.+++|||++++++.+++.+.+++++++.||+||+++..+......... .... .++|+|++++. ++
T Consensus 284 ~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~-~~~G~~~~~~~-----~~------ 351 (521)
T PRK06187 284 RLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKR-RSAGRPLPGVE-----AR------ 351 (521)
T ss_pred hEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccccccC-CccccccCCeE-----EE------
Confidence 9999999999999999999998999999999999987665543211000 0133 67888888877 77
Q ss_pred CccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCC--CcceEEEEecCCCCCcccccccChhhhHHhhccCC
Q psy8076 475 GRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEP--HELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKF 552 (737)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~--g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~ 552 (737)
|+|+++.+++. |+.|||+++|+ .+..||+++++.+.+.+.
T Consensus 352 --------------------------------i~~~~~~~~~~~~g~~Gel~v~~~---~~~~~y~~~~~~~~~~~~--- 393 (521)
T PRK06187 352 --------------------------------IVDDDGDELPPDGGEVGEIIVRGP---WLMQGYWNRPEATAETID--- 393 (521)
T ss_pred --------------------------------EECCCCCCCCCCCCCeeEEEEECc---chhhhhcCCHHHHHHHhh---
Confidence 99999999999 99999999999 899999999988877653
Q ss_pred CCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCc
Q psy8076 553 PGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDK 632 (737)
Q Consensus 553 ~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~ 632 (737)
+|||+|||+++++++|.+++.||.||+||++|.+|++.+||++|.++++|.+++|++.+++..++.+++++++.++
T Consensus 394 ~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~---- 469 (521)
T PRK06187 394 GGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPG---- 469 (521)
T ss_pred CCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCC----
Confidence 5799999999999999999999999999999999999999999999999999999999988788899999998765
Q ss_pred CCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchh
Q psy8076 633 MGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKT 712 (737)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi 712 (737)
. ....++++++++++++.+++|..++++++||+|++||+
T Consensus 470 --------~---------------------------------~~~~~~l~~~l~~~l~~~~~p~~i~~v~~~P~t~~gK~ 508 (521)
T PRK06187 470 --------A---------------------------------TLDAKELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKI 508 (521)
T ss_pred --------C---------------------------------CCCHHHHHHHHHHhccCCCCceEEEEccCCCCCCCCCe
Confidence 1 01246789999999999999999999999999999999
Q ss_pred hHHHHHHHHcCCC
Q psy8076 713 ARKSIVDMARNKP 725 (737)
Q Consensus 713 ~R~~l~~~~~~~~ 725 (737)
+|+.|++++.+++
T Consensus 509 ~r~~l~~~~~~~~ 521 (521)
T PRK06187 509 LKRVLREQYAEGK 521 (521)
T ss_pred eHHHHHHHHhcCC
Confidence 9999999998763
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-65 Score=573.19 Aligned_cols=479 Identities=21% Similarity=0.309 Sum_probs=399.2
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcC
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 158 (737)
+.+.|++++++. ||++|+++.+ .++||.||.++++++|++|.+.|. +|++|+|+++|++++++++|||+++|
T Consensus 3 ~~~~~~~~a~~~-p~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G 74 (487)
T PRK07638 3 ITKEYKKHASLQ-PNKIAIKEND------RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAG 74 (487)
T ss_pred hHHHHHHHHHhC-CCCeEEecCC------cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 567888899888 9999999876 899999999999999999999984 89999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCccc
Q psy8076 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL 238 (737)
Q Consensus 159 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~ 238 (737)
++++|+++.++.+++.++++.++++++++++...... .. ....++.+..
T Consensus 75 ~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---------~~-------~~~~~~~~~~--------------- 123 (487)
T PRK07638 75 WTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDL---------PD-------EEGRVIEIDE--------------- 123 (487)
T ss_pred eEEEecCccCCHHHHHHHHHhCCCCEEEEecccccch---------hh-------ccceEEEehh---------------
Confidence 9999999999999999999999999999987532210 00 0111222111
Q ss_pred HHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEe
Q psy8076 239 WDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317 (737)
Q Consensus 239 ~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~ 317 (737)
+.+....... ........+++++++||||||| .||||+++|++++.+... ....++++++|+++..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG------------~PKgv~~s~~~~~~~~~~-~~~~~~~~~~d~~~~~ 190 (487)
T PRK07638 124 WKRMIEKYLPTYAPIENVQNAPFYMGFTSGSTG------------KPKAFLRAQQSWLHSFDC-NVHDFHMKREDSVLIA 190 (487)
T ss_pred hhhhhhhccccccccccCCCCcEEEEeCCCCCC------------CCcEEEEecHHHHHHHHH-HHHhcCcCCCCEEEEe
Confidence 1111111111 1111223467899999999999 999999999887666553 4566889999999999
Q ss_pred cccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCcc
Q psy8076 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLR 397 (737)
Q Consensus 318 ~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr 397 (737)
.|++|..++ +.++.++..|+++++.+. +++..+++.++++++|++.++|++++.|.+... ...+.+
T Consensus 191 ~~l~~~~~l-~~~~~~l~~g~~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~ 256 (487)
T PRK07638 191 GTLVHSLFL-YGAISTLYVGQTVHLMRK-----FIPNQVLDKLETENISVMYTVPTMLESLYKENR--------VIENKM 256 (487)
T ss_pred ecchHHHHH-HHHHHHHccCcEEEEcCC-----CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC--------cCCcee
Confidence 999998874 567889999999998763 689999999999999999999999999987622 123556
Q ss_pred EEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCc
Q psy8076 398 YLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGR 476 (737)
Q Consensus 398 ~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~ 476 (737)
.++++|+++++++.+++.+.+ +..+++.||+||++..+.... .....++ .++|+|++|+. ++
T Consensus 257 ~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~---~~~~~~~-~~~G~~~~~~~-----~~-------- 319 (487)
T PRK07638 257 KIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVD---EESERRP-NSVGRPFHNVQ-----VR-------- 319 (487)
T ss_pred EEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecc---cccCCCC-CCCCcccCCcE-----EE--------
Confidence 678899999999999999988 578999999999986554432 1223334 68889988888 77
Q ss_pred cccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCee
Q psy8076 477 AHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYY 556 (737)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~ 556 (737)
|+|++|.++++|+.|||+|+|+ .++.||+++++.+.+. + .+|||
T Consensus 320 ------------------------------i~d~~g~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~-~--~~g~~ 363 (487)
T PRK07638 320 ------------------------------ICNEAGEEVQKGEIGTVYVKSP---QFFMGYIIGGVLAREL-N--ADGWM 363 (487)
T ss_pred ------------------------------EECCCCCCCCCCCCeEEEEecc---cceeeecCCHHHHhhh-c--cCCcE
Confidence 9999999999999999999999 8999999999876553 2 37899
Q ss_pred ecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCcc
Q psy8076 557 DTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFS 636 (737)
Q Consensus 557 ~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~ 636 (737)
+|||+|++|++|++++.||.+|+||++|++|+|.|||+++.+||+|.+++|++.+++..++.++++++...
T Consensus 364 ~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~--------- 434 (487)
T PRK07638 364 TVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSA--------- 434 (487)
T ss_pred ecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECCC---------
Confidence 99999999999999999999999999999999999999999999999999999999888888888886421
Q ss_pred ccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHH
Q psy8076 637 GLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKS 716 (737)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~ 716 (737)
..+++++++++.++.+++|..++++++||+|++||++|++
T Consensus 435 ----------------------------------------~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKv~r~~ 474 (487)
T PRK07638 435 ----------------------------------------TKQQLKSFCLQRLSSFKIPKEWHFVDEIPYTNSGKIARME 474 (487)
T ss_pred ----------------------------------------CHHHHHHHHHHHhhcccCCcEEEEecccCCCCcccccHHH
Confidence 2568899999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q psy8076 717 IVDMARNKP 725 (737)
Q Consensus 717 l~~~~~~~~ 725 (737)
|++++....
T Consensus 475 L~~~~~~~~ 483 (487)
T PRK07638 475 AKSWIENQE 483 (487)
T ss_pred HHHHHhccc
Confidence 999987643
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-65 Score=582.24 Aligned_cols=514 Identities=22% Similarity=0.302 Sum_probs=419.4
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++++++ |+++|+++.+. .+.+||+||.++++++|++|.+.|+++|++|+++++|++++++++|||+++
T Consensus 19 ~l~~~l~~~~~~~-p~~~a~~~~~~----~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~ 93 (558)
T PRK12583 19 TIGDAFDATVARF-PDREALVVRHQ----ALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARI 93 (558)
T ss_pred cHHHHHHHHHHHC-CCCeEEEecCC----CcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhh
Confidence 4789999999988 99999988541 378999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcC------------CCCCeEEEEeccc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISS------------CKPDYCIIFQRRC 225 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~viv~~~~~ 225 (737)
|++++|+++.++.+++..++++++++++++++..... .+...+.+....+. ..+..++.....
T Consensus 94 G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 168 (558)
T PRK12583 94 GAILVNINPAYRASELEYALGQSGVRWVICADAFKTS----DYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPA- 168 (558)
T ss_pred CCEEEecCCCCCHHHHHHHHHhcCCcEEEEecccccc----chhHHHHHHhhhhccccccccccccCCcceEEEEecCC-
Confidence 9999999999999999999999999999998754221 11122222111110 022233322211
Q ss_pred ccccccCCCCcccHHHHHhhcCC-------CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHH
Q psy8076 226 VEEAELTPGYDILWDDALAQRLS-------HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATL 298 (737)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~ 298 (737)
.......|.+....... .......++++++++||||||| .||||+++|++++.+.
T Consensus 169 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG------------~PK~v~~s~~~l~~~~ 230 (558)
T PRK12583 169 ------PPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTG------------FPKGATLSHHNILNNG 230 (558)
T ss_pred ------CCccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCC------------CCceEEeeHHHHHHHH
Confidence 01112234443322211 1112346789999999999999 9999999998876554
Q ss_pred HHHHhhhhcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHH
Q psy8076 299 AWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVI 378 (737)
Q Consensus 299 ~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l 378 (737)
.. ....++++.+|+++...|++|..|....++.++..|+++++... ..++..+++.++++++|+++++|+++..+
T Consensus 231 ~~-~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~----~~~~~~~~~~i~~~~~t~l~~~P~~~~~l 305 (558)
T PRK12583 231 YF-VAESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNE----AFDPLATLQAVEEERCTALYGVPTMFIAE 305 (558)
T ss_pred HH-HHHHhCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecC----CCCHHHHHHHHHHcCCeEEeccHHHHHHH
Confidence 43 45567899999999999999999988888999999999987643 36889999999999999999999999888
Q ss_pred HHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcC-CcccccccccccccccccccccCCCCCCCCCCccCCCc
Q psy8076 379 RREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFN-VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPF 457 (737)
Q Consensus 379 ~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~ 457 (737)
...... ...++++||.+++||+++++++.+++.+.++ ..+++.||+||++...+.... ......++ .++|+|+
T Consensus 306 ~~~~~~----~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~-~~~~~~~~-~~vG~p~ 379 (558)
T PRK12583 306 LDHPQR----GNFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTA-ADDLERRV-ETVGRTQ 379 (558)
T ss_pred Hccccc----cCCCchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceeccCc-cccccccc-CCCCccC
Confidence 765432 3356889999999999999999999998887 479999999999976554322 11122233 6788888
Q ss_pred CCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCccccc
Q psy8076 458 PGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTL 537 (737)
Q Consensus 458 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy 537 (737)
+++. ++ |+|+++.+++.|+.|||+|+|+ .++.||
T Consensus 380 ~~~~-----~~--------------------------------------i~d~~~~~~~~g~~Gel~v~g~---~~~~gy 413 (558)
T PRK12583 380 PHLE-----VK--------------------------------------VVDPDGATVPRGEIGELCTRGY---SVMKGY 413 (558)
T ss_pred CCCe-----EE--------------------------------------EECCCCCCCCCCCeeEEEEEeC---ccchhh
Confidence 8877 77 9999999999999999999999 999999
Q ss_pred ccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCc
Q psy8076 538 YKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617 (737)
Q Consensus 538 ~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~ 617 (737)
+++++.+.+.+. .+|||+|||+|++++||++++.||.||+||++|.+|+|.|||++|.++|.|.+++|++++++..++
T Consensus 414 ~~~~~~~~~~~~--~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~ 491 (558)
T PRK12583 414 WNNPEATAESID--EDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGE 491 (558)
T ss_pred cCChHHHHhhcC--CCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCc
Confidence 999998877653 378999999999999999999999999999999999999999999999999999999999887788
Q ss_pred ceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeee
Q psy8076 618 IPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKL 697 (737)
Q Consensus 618 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 697 (737)
.++++++..+. . .....+|+++++++|+.+++|..
T Consensus 492 ~~~~~v~~~~~------------~---------------------------------~~~~~~i~~~~~~~L~~~~~P~~ 526 (558)
T PRK12583 492 EIVAWVRLHPG------------H---------------------------------AASEEELREFCKARIAHFKVPRY 526 (558)
T ss_pred EEEEEEEECCC------------C---------------------------------CCCHHHHHHHHHhhcccCcCCcE
Confidence 89999998754 1 01246799999999999999999
Q ss_pred EEEcCCCCCCCCchhhHHHHHHHHcC
Q psy8076 698 STSVTGLPRTRSGKTARKSIVDMARN 723 (737)
Q Consensus 698 ~~~v~~lP~t~sGKi~R~~l~~~~~~ 723 (737)
++++++||+|++||++|+.|++++..
T Consensus 527 i~~v~~lP~t~sGK~~r~~L~~~~~~ 552 (558)
T PRK12583 527 FRFVDEFPMTVTGKVQKFRMREISIE 552 (558)
T ss_pred EEEeccCCCCCCCCccHHHHHHHHHh
Confidence 99999999999999999999998765
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=578.02 Aligned_cols=516 Identities=19% Similarity=0.243 Sum_probs=413.0
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+.++..+ |+++++.+.. .+..+.+||.||+++++++|++|.+.|+++||+|+++++|++++++++|||+++
T Consensus 11 ~~~~~l~~~~~~~-~~~~~~~~~~--~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~ 87 (539)
T PRK07008 11 LISSLIAHAARHA-GDTEIVSRRV--EGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGS 87 (539)
T ss_pred CHHHHHHHHHhhC-CCceEEEeec--cCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 4678888888877 9988887542 223578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|++|.++.+++..+++.+++++++++... ...+.+.....+ .+..++.+..... ........+
T Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~ 155 (539)
T PRK07008 88 GAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTF---------LPLVDALAPQCP-NVKGWVAMTDAAH--LPAGSTPLL 155 (539)
T ss_pred CcEEeecccccCHHHHHHHHhccCCcEEEEcchh---------HHHHHHHHhhCC-CceEEEEEccCCc--cccCCcccc
Confidence 9999999999999999999999999999998642 233444433443 4444444433211 000111234
Q ss_pred cHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHH-HHHhhhhcCCCCcEEE
Q psy8076 238 LWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLA-WTMSVIYNMGQDDVWW 315 (737)
Q Consensus 238 ~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~-~~~~~~~~~~~~d~~l 315 (737)
.++++...... .......++++++++||||||| .||||+++|++++.+.. ..+...++++.+|+++
T Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG------------~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l 223 (539)
T PRK07008 156 CYETLVGAQDGDYDWPRFDENQASSLCYTSGTTG------------NPKGALYSHRSTVLHAYGAALPDAMGLSARDAVL 223 (539)
T ss_pred cHHHHhcccCCCcCcccCCcccceEEEECCCCCC------------CCcEEEEecHHHHHHHHHhhcccccCCCCCceEE
Confidence 55555433222 1223456788999999999999 99999999988764332 2233457888999999
Q ss_pred EecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCC
Q psy8076 316 TASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395 (737)
Q Consensus 316 ~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~ 395 (737)
..+|++|..++.. ++.++..|+++++.+. ..++..+++.++++++|++.++|+++..|.+.... ...++++
T Consensus 224 ~~~p~~h~~~~~~-~~~~l~~G~~~~~~~~----~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~----~~~~~~~ 294 (539)
T PRK07008 224 PVVPMFHVNAWGL-PYSAPLTGAKLVLPGP----DLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMRE----AGLRFST 294 (539)
T ss_pred ecCchHHhhhHHH-HHHHHhcCceEEEecC----CcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccc----cCCCccc
Confidence 9999999877543 5778999999998753 36899999999999999999999999999876543 3446789
Q ss_pred ccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCC------CCCCCccCCCcCCCCCCcceeee
Q psy8076 396 LRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDT------VPPKYSTGLPFPGYDGKYVNIVM 469 (737)
Q Consensus 396 Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~------~~~~~~~G~p~~g~~~~~~~~~~ 469 (737)
||.++++|+++++++.+++.+.++.++++.||+||++...+.......... .....++|+|++|+. ++
T Consensus 295 l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~-----~~- 368 (539)
T PRK07008 295 LRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVD-----MK- 368 (539)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccCCchhhhhhcccCCccccceE-----EE-
Confidence 999999999999999999999999999999999999865543322110000 000145666666666 55
Q ss_pred eccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCC--cceEEEEecCCCCCcccccccChhhhHHh
Q psy8076 470 LNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPH--ELGRIVVKLPLPPGTMSTLYKAPQRFMKI 547 (737)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g--~~GEL~i~g~~~~~~~~gy~~~~~~~~~~ 547 (737)
|+|+++++++.+ +.|||+++|+ .++.||+++++. .
T Consensus 369 -------------------------------------i~d~~~~~~~~~~~~~Gei~v~g~---~~~~gy~~~~~~---~ 405 (539)
T PRK07008 369 -------------------------------------IVGDDGRELPWDGKAFGDLQVRGP---WVIDRYFRGDAS---P 405 (539)
T ss_pred -------------------------------------EECCCCCccCCCCCcceEEEEeCC---ccchhhcCChhh---h
Confidence 999999998864 5799999999 899999999842 2
Q ss_pred hccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeec
Q psy8076 548 YFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKR 627 (737)
Q Consensus 548 ~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~ 627 (737)
+. +|||+|||+|++++||++++.||.||+||++|++|+|.|||++|.+||.|.+++|++++++..++.++++|+..+
T Consensus 406 -~~--~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~ 482 (539)
T PRK07008 406 -LV--DGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRP 482 (539)
T ss_pred -hc--CCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCC
Confidence 22 689999999999999999999999999999999999999999999999999999999999877888999888765
Q ss_pred CCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCC
Q psy8076 628 IPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRT 707 (737)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t 707 (737)
+ . ....+++++++++++++|++|..++++++||+|
T Consensus 483 ~------------~---------------------------------~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t 517 (539)
T PRK07008 483 G------------A---------------------------------EVTREELLAFYEGKVAKWWIPDDVVFVDAIPHT 517 (539)
T ss_pred C------------C---------------------------------ccCHHHHHHHHHhhcccccCCeEEEEecCCCCC
Confidence 4 1 112467999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHcCCCC
Q psy8076 708 RSGKTARKSIVDMARNKPL 726 (737)
Q Consensus 708 ~sGKi~R~~l~~~~~~~~~ 726 (737)
++||++|++|++++.+-.+
T Consensus 518 ~sgKi~r~~l~~~~~~~~~ 536 (539)
T PRK07008 518 ATGKLQKLKLREQFRDYVL 536 (539)
T ss_pred CccceeHHHHHHHHHhhcc
Confidence 9999999999999887544
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-64 Score=573.72 Aligned_cols=491 Identities=22% Similarity=0.279 Sum_probs=410.9
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcC
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 158 (737)
+.++|++++++. |+++|+++.+ +.+||.||++++.++|.+|.+.|+++|++|+++++|++++++++|||+++|
T Consensus 4 ~~~~~~~~~~~~-~~~~a~~~~~------~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G 76 (497)
T PRK06145 4 LSASIAFHARRT-PDRAALVYRD------QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLG 76 (497)
T ss_pred HHHHHHHHHHHC-CCceEEEECC------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence 468899999888 9999999876 899999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCccc
Q psy8076 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL 238 (737)
Q Consensus 159 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~ 238 (737)
++++|+++.++.+++..++++++++++++++..... . . .....+.++.. . ...
T Consensus 77 ~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~---------~----~----~~~~~~~~~~~-~---------~~~ 129 (497)
T PRK06145 77 AVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAI---------V----A----LETPKIVIDAA-A---------QAD 129 (497)
T ss_pred cEEEecccccCHHHHHHHHHhcCCcEEEEccchhhh---------h----h----cccceEEecCc-c---------cch
Confidence 999999999999999999999999999998653110 0 0 01112222111 0 000
Q ss_pred HHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEe
Q psy8076 239 WDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317 (737)
Q Consensus 239 ~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~ 317 (737)
+..+...... .......++++++++||||||| .||+|+++|+++...... ....+++..+++++..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PK~v~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~ 196 (497)
T PRK06145 130 SRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTD------------RPKGVMHSYGNLHWKSID-HVIALGLTASERLLVV 196 (497)
T ss_pred hHHHhccCCCCCCCCCCCccceEEEEeCCCCCC------------CCcEEEEecHHHHHHHHH-HHHhhCCCCCcEEEEe
Confidence 1111111111 1122356789999999999999 999999999886654433 4455788999999999
Q ss_pred cccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCcc
Q psy8076 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLR 397 (737)
Q Consensus 318 ~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr 397 (737)
.|++|..++....+.++..|+++++.+ ..++..+++.++++++|++.++|++++.+...... ...+++++|
T Consensus 197 ~p~~~~~~~~~~~~~~l~~g~~~~~~~-----~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~----~~~~~~~l~ 267 (497)
T PRK06145 197 GPLYHVGAFDLPGIAVLWVGGTLRIHR-----EFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDR----DRFDLDSLA 267 (497)
T ss_pred cCchhHhHHHHHHHHHHhccCEEEECC-----cCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCc----cccccccce
Confidence 999999887666678899999999876 36899999999999999999999999999876543 344678999
Q ss_pred EEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCc
Q psy8076 398 YLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGR 476 (737)
Q Consensus 398 ~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~ 476 (737)
.+++||+++++++.+++.+.+ +.++++.||+||++..++.... ......+ +++|+|++++. ++
T Consensus 268 ~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~--~~~~~~~-~~~G~~~~~~~-----~~-------- 331 (497)
T PRK06145 268 WCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEA--GREIEKI-GSTGRALAHVE-----IR-------- 331 (497)
T ss_pred EEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccC--ccccccC-CCcccCCCCce-----EE--------
Confidence 999999999999999999988 4789999999999976554332 1122233 67888888887 77
Q ss_pred cccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCee
Q psy8076 477 AHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYY 556 (737)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~ 556 (737)
|+|+++++++.|+.|||+++|+ +++.||+++++.+.+.|. ++||
T Consensus 332 ------------------------------i~~~~~~~~~~~~~Gel~v~g~---~~~~Gy~~~~~~~~~~~~---~~~~ 375 (497)
T PRK06145 332 ------------------------------IADGAGRWLPPNMKGEICMRGP---KVTKGYWKDPEKTAEAFY---GDWF 375 (497)
T ss_pred ------------------------------EECCCCCCCCCCCceEEEEECc---chhhhhcCChHHHHHHHh---CCCe
Confidence 9999999999999999999999 999999999999988763 6899
Q ss_pred ecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCcc
Q psy8076 557 DTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFS 636 (737)
Q Consensus 557 ~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~ 636 (737)
+|||+++++.||+++++||.||+||++|++|++.|||+.|.++|+|.+++|++.+++..++.+++++++.+.
T Consensus 376 ~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-------- 447 (497)
T PRK06145 376 RSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPG-------- 447 (497)
T ss_pred eccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCC--------
Confidence 999999999999999999999999999999999999999999999999999999998888889999988654
Q ss_pred ccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHH
Q psy8076 637 GLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKS 716 (737)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~ 716 (737)
. ....++|+++++++|+++++|..++++++||+|++||++|++
T Consensus 448 ----~---------------------------------~~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKi~r~~ 490 (497)
T PRK06145 448 ----A---------------------------------TLTLEALDRHCRQRLASFKVPRQLKVRDELPRNPSGKVLKRV 490 (497)
T ss_pred ----C---------------------------------CCCHHHHHHHHHHhhhcCCCCCEEEEeccCCCCCcccccHHH
Confidence 1 012467999999999999999999999999999999999999
Q ss_pred HHHHHc
Q psy8076 717 IVDMAR 722 (737)
Q Consensus 717 l~~~~~ 722 (737)
|++++.
T Consensus 491 l~~~~~ 496 (497)
T PRK06145 491 LRDELN 496 (497)
T ss_pred HHHHhc
Confidence 999875
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=583.75 Aligned_cols=494 Identities=17% Similarity=0.196 Sum_probs=371.4
Q ss_pred hHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHH
Q psy8076 77 NACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVR 156 (737)
Q Consensus 77 n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~ 156 (737)
|-+.++|+++++++ |+++|+++.+ .+.++++||+||.++++++|++|.++ ++||+|+|+++|++++++++|||++
T Consensus 2 ~~~~~~l~~~~~~~-~~~~a~~~~~--~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~ 76 (525)
T PRK05851 2 NELAAALSDAMTAS-GRDLVVLDRE--SGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWL 76 (525)
T ss_pred chHHHHHHHHhcCC-CCceEEeCCC--CCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHH
Confidence 44678888998888 9999998874 33478999999999999999999988 7999999999999999999999999
Q ss_pred cCCEEEecCC-------CCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEeccccccc
Q psy8076 157 LGAIHSVVFG-------GFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEA 229 (737)
Q Consensus 157 ~G~~~vpl~~-------~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~ 229 (737)
+|+++++++. ....+++..++++++++++|+++... ..+.... . . +.+..
T Consensus 77 ~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~~~---~-~----~~~~~------ 133 (525)
T PRK05851 77 AGAAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHL---------ERLRAVD---S-S----VTVHD------ 133 (525)
T ss_pred cCCCCcCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHH---------HHHHHhh---c-c----ccccc------
Confidence 9998754421 12335666789999999999976421 1111110 0 0 00000
Q ss_pred ccCCCCcccHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCC
Q psy8076 230 ELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMG 309 (737)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~ 309 (737)
+.............+..+++++||+||||||| .||||+++|++++..... +...+++.
T Consensus 134 ---------~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~th~~~~~~~~~-~~~~~~~~ 191 (525)
T PRK05851 134 ---------LATAAHTNRSASLTPPDSGGPAVLQGTAGSTG------------TPRTAILSPGAVLSNLRG-LNARVGLD 191 (525)
T ss_pred ---------ccccccccccccCCCCCCCCeEEEEeCCCCCC------------CCcEEEecHHHHHHHHHH-HHHHhCCC
Confidence 00000000000112346789999999999999 999999999887665554 45568888
Q ss_pred -CCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccc
Q psy8076 310 -QDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLG 388 (737)
Q Consensus 310 -~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~ 388 (737)
.+|++++.+|++|++++. .++.+++.|+++++.+.... ..++..+++.++++++|++..+|.++..+.......
T Consensus 192 ~~~d~~l~~~pl~h~~g~~-~~~~~l~~G~~~~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~--- 266 (525)
T PRK05851 192 AATDVGCSWLPLYHDMGLA-FLLTAALAGAPLWLAPTTAF-SASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRV--- 266 (525)
T ss_pred CCCCeEEEcCCCccCccHH-HHHHHHHcCCeEEEcCHHHH-HHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccc---
Confidence 899999999999999975 47899999999999763211 236788999999999998877666666654432211
Q ss_pred cCCCCCCccEEEeecCCCCHHHHHHHHHh---cCC---cccccccccccccccccccccCC---------C--CCCCCCC
Q psy8076 389 AQYSTDSLRYLFVAGEHCDHETKNWAEKS---FNV---TMLNHWWQTETGHSITAHCLGYQ---------H--DTVPPKY 451 (737)
Q Consensus 389 ~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~---~~~---~i~~~YG~TE~~~~~~~~~~~~~---------~--~~~~~~~ 451 (737)
...++++||.+++||+++++++.++|.+. +|. .++|.||+||++..++....... . ...+. .
T Consensus 267 ~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 345 (525)
T PRK05851 267 SDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRH-A 345 (525)
T ss_pred cCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCccccee-e
Confidence 23467899999999999999999988864 454 48999999999865543211000 0 00111 3
Q ss_pred ccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCC-CccCCCcceEEEEecCCC
Q psy8076 452 STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDG-SECEPHELGRIVVKLPLP 530 (737)
Q Consensus 452 ~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g-~~~~~g~~GEL~i~g~~~ 530 (737)
++|+|++|++ ++ |+|+++ .+++.|+.|||+|+||
T Consensus 346 ~vG~p~~g~~-----v~--------------------------------------i~d~~~~~~~~~g~~GEl~v~g~-- 380 (525)
T PRK05851 346 VLGNPIPGME-----VR--------------------------------------ISPGDGAAGVAGREIGEIEIRGA-- 380 (525)
T ss_pred eecCCCCCcE-----EE--------------------------------------EECCCCCccCCCCCeEEEEEecC--
Confidence 4566665555 54 999776 4689999999999999
Q ss_pred CCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecc
Q psy8076 531 PGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGV 610 (737)
Q Consensus 531 ~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~ 610 (737)
+++.|||++++.+ .+|||+|||+|+++ +|+|+|+||.||+||++|+||+|.|||++|.+||.|.+++|+++
T Consensus 381 -~~~~GY~~~~~~~-------~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~ 451 (525)
T PRK05851 381 -SMMSGYLGQAPID-------PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAV 451 (525)
T ss_pred -chhhccccCCccC-------CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEE
Confidence 9999999998632 26899999999996 89999999999999999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcC
Q psy8076 611 PEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIG 690 (737)
Q Consensus 611 ~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 690 (737)
+++..++.+.++++.... . ...+.+.+.+++.+...+
T Consensus 452 ~~~~~~~~~~~~v~~~~~------------~------------------------------~~~~~~~~~~~~~l~~~l- 488 (525)
T PRK05851 452 GTGEGSARPGLVIAAEFR------------G------------------------------PDEAGARSEVVQRVASEC- 488 (525)
T ss_pred EecCCCCceeEEEEEEec------------C------------------------------cchHHHHHHHHHHHHHHh-
Confidence 988888777777765422 0 111233444444444443
Q ss_pred CceeeeeEEEcC--CCCCCCCchhhHHHHHHHHcCC
Q psy8076 691 PIAAFKLSTSVT--GLPRTRSGKTARKSIVDMARNK 724 (737)
Q Consensus 691 ~~~~p~~~~~v~--~lP~t~sGKi~R~~l~~~~~~~ 724 (737)
+++|..+++++ +||+|++||++|++|++.+.+.
T Consensus 489 -~~~P~~~~~v~~~~lP~t~~GKi~r~~L~~~~~~~ 523 (525)
T PRK05851 489 -GVVPSDVVFVAPGSLPRTSSGKLRRLAVKRSLEAA 523 (525)
T ss_pred -CCCccEEEEECCCCcCcCcchHHHHHHHHHHHHhc
Confidence 28999999998 8999999999999999988764
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-64 Score=579.97 Aligned_cols=514 Identities=23% Similarity=0.300 Sum_probs=419.4
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++++++ |+++|+++.+ ..+.+||+||+++++++|+.|.+.|+++|++|+++++|++++++++|||+++
T Consensus 17 ~l~~~l~~~~~~~-~~~~ai~~~~----~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~ 91 (559)
T PRK08315 17 TIGQLLDRTAARY-PDREALVYRD----QGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKI 91 (559)
T ss_pred cHHHHHHHHHHHC-CCCeEEEEcC----CCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHh
Confidence 5789999999888 9999999854 1378999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcC------------CCCCeEEEEeccc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISS------------CKPDYCIIFQRRC 225 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~viv~~~~~ 225 (737)
|++++|++|..+.+++..+++.++++++++++..... ++...+.+....+. ...+.++.+...
T Consensus 92 G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 166 (559)
T PRK08315 92 GAILVTINPAYRLSELEYALNQSGCKALIAADGFKDS----DYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDE- 166 (559)
T ss_pred CeEEEecCccCCHHHHHHHHHhcCCCEEEEecccccc----chHHHHHHhhhhhhcccccccccccCCCceeEEeeccc-
Confidence 9999999999999999999999999999998753211 11222222111110 022333333221
Q ss_pred ccccccCCCCcccHHHHHhhcCC-------CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHH
Q psy8076 226 VEEAELTPGYDILWDDALAQRLS-------HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATL 298 (737)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~ 298 (737)
.......+.++...... .......++++++++||||||| .||||.++|++++.+.
T Consensus 167 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG------------~PK~v~~s~~~l~~~~ 228 (559)
T PRK08315 167 ------KHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTG------------FPKGATLTHRNILNNG 228 (559)
T ss_pred ------CCcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCC------------CcceEEeeHHHHHHHH
Confidence 01112344444332210 1122356789999999999999 9999999998876554
Q ss_pred HHHHhhhhcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHH
Q psy8076 299 AWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVI 378 (737)
Q Consensus 299 ~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l 378 (737)
.. ....++++++|+++...|++|..++...++.++..|+++++... ..++..+++.++++++|+++++|+++..+
T Consensus 229 ~~-~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~~l~~~~~t~~~~~P~~~~~~ 303 (559)
T PRK08315 229 YF-IGEAMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGE----GFDPLATLAAVEEERCTALYGVPTMFIAE 303 (559)
T ss_pred HH-HHHhcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecC----CCCHHHHHHHHHHcCCeEEecchHHHHHH
Confidence 43 55668899999999999999999988888999999999996543 36899999999999999999999999888
Q ss_pred HHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcCC-cccccccccccccccccccccCCCCCCCCCCccCCCc
Q psy8076 379 RREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNV-TMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPF 457 (737)
Q Consensus 379 ~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~-~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~ 457 (737)
...... ...++++||.+++||+++++++++.+.+.++. .+++.||+||++..++..... ......+ .++|+|+
T Consensus 304 ~~~~~~----~~~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~-~~~~~~~-~~vG~p~ 377 (559)
T PRK08315 304 LDHPDF----ARFDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTD-DPLEKRV-TTVGRAL 377 (559)
T ss_pred HhCccc----CCCCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcc-cchhhcc-CCCCccC
Confidence 765433 33467899999999999999999999998875 499999999998755543221 1112233 6788888
Q ss_pred CCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCC-CCccCCCcceEEEEecCCCCCcccc
Q psy8076 458 PGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRND-GSECEPHELGRIVVKLPLPPGTMST 536 (737)
Q Consensus 458 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~-g~~~~~g~~GEL~i~g~~~~~~~~g 536 (737)
+|+. ++ |+|++ |++|+.|+.|||+|+|+ +++.|
T Consensus 378 ~~~~-----v~--------------------------------------i~d~~~~~~~~~g~~GEl~v~g~---~~~~g 411 (559)
T PRK08315 378 PHLE-----VK--------------------------------------IVDPETGETVPRGEQGELCTRGY---SVMKG 411 (559)
T ss_pred CCcE-----EE--------------------------------------EEcCccCCcCCCCCceEEEEECc---hhhhh
Confidence 8887 77 99987 99999999999999999 99999
Q ss_pred cccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCC
Q psy8076 537 LYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKG 616 (737)
Q Consensus 537 y~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~ 616 (737)
|+++++.+...+. .++||+|||+|++++||.++|+||.||+||++|++|++.|||++|.++|+|.+++|++++++..+
T Consensus 412 y~~~~~~~~~~~~--~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~ 489 (559)
T PRK08315 412 YWNDPEKTAEAID--ADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYG 489 (559)
T ss_pred hcCChhHHhhcCC--CCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCC
Confidence 9999988876553 37899999999999999999999999999999999999999999999999999999999988778
Q ss_pred cceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeee
Q psy8076 617 EIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFK 696 (737)
Q Consensus 617 ~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~ 696 (737)
+.++++|++..+ . ....++++++++++++.|++|.
T Consensus 490 ~~~~~~v~~~~~------------~---------------------------------~~~~~~l~~~l~~~l~~~~~P~ 524 (559)
T PRK08315 490 EEVCAWIILRPG------------A---------------------------------TLTEEDVRDFCRGKIAHYKIPR 524 (559)
T ss_pred eEEEEEEEeCCC------------C---------------------------------CCCHHHHHHHHHhhcccccCCc
Confidence 889999987654 1 0124679999999999999999
Q ss_pred eEEEcCCCCCCCCchhhHHHHHHHHcC
Q psy8076 697 LSTSVTGLPRTRSGKTARKSIVDMARN 723 (737)
Q Consensus 697 ~~~~v~~lP~t~sGKi~R~~l~~~~~~ 723 (737)
.++++++||+|++||++|..|++++..
T Consensus 525 ~i~~v~~lP~t~~GK~~r~~L~~~~~~ 551 (559)
T PRK08315 525 YIRFVDEFPMTVTGKIQKFKMREMMIE 551 (559)
T ss_pred EEEEcccCCCCCCCceeHHHHHHHHHh
Confidence 999999999999999999999998665
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-64 Score=575.37 Aligned_cols=508 Identities=20% Similarity=0.253 Sum_probs=416.0
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++++++ |+++|+++.+ ..+..+.+||+||+++++++|+.|.++|+++||+|+++++|+.++++++|||+++
T Consensus 8 ~l~~~~~~~a~~~-p~~~a~~~~~-~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~ 85 (517)
T PRK08008 8 HLRQMWDDLADVY-GHKTALIFES-SGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKI 85 (517)
T ss_pred cHHHHHHHHHHHC-CCceEEEccc-CCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 5789999999988 9999999865 2344689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|++|.++.+++.+++++++++++++++.. ...+.+........++.+++...... ......
T Consensus 86 G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 151 (517)
T PRK08008 86 GAIMVPINARLLREESAWILQNSQASLLVTSAQF---------YPMYRQIQQEDATPLRHICLTRVALP-----ADDGVS 151 (517)
T ss_pred CeEEEEcCcccCHHHHHHHHHhcCceEEEEecch---------hHHHHHHHhhccccCcEEEEecCCCc-----cccccc
Confidence 9999999999999999999999999999998752 23444444433334556665543210 011123
Q ss_pred cHHHHHhhcCC--CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEE
Q psy8076 238 LWDDALAQRLS--HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWW 315 (737)
Q Consensus 238 ~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l 315 (737)
.+.+....... ....+..++++++++||||||| .||||+++|++++..... ......+..+++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG------------~PK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~~ 218 (517)
T PRK08008 152 SFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTS------------RPKGVVITHYNLRFAGYY-SAWQCALRDDDVYL 218 (517)
T ss_pred CHHHHhccCCccccccCCCCCCCeEEEEECCCCCC------------CCcEEEEehHHHHHHHHH-HhhhcCCCCCCeEE
Confidence 34443332221 1223456789999999999999 999999999987644322 22334578899999
Q ss_pred EecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCC
Q psy8076 316 TASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395 (737)
Q Consensus 316 ~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~ 395 (737)
+.+|++|..++...++.++..|+++++.+. .++..+++.++++++|++.++|++++.+...... .....++
T Consensus 219 ~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~~~~ 289 (517)
T PRK08008 219 TVMPAFHIDCQCTAAMAAFSAGATFVLLEK-----YSARAFWGQVCKYRATITECIPMMIRTLMVQPPS----ANDRQHC 289 (517)
T ss_pred EecCcHHHHHHHHHHHHHHhcCcEEEEccc-----cCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCc----ccccccc
Confidence 999999988877778999999999999863 6889999999999999999999999998765432 1223457
Q ss_pred ccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccC
Q psy8076 396 LRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDG 475 (737)
Q Consensus 396 Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~ 475 (737)
+|.+.++ .+++++...+|.+.++.++++.||+||+++.++.... ...... .++|.|++|+. ++
T Consensus 290 l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~---~~~~~~-~~~G~~~~g~~-----~~------- 352 (517)
T PRK08008 290 LREVMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRP---GDKRRW-PSIGRPGFCYE-----AE------- 352 (517)
T ss_pred ceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccccccccccccCCc---cccccC-CccccCCCCcE-----EE-------
Confidence 8887775 4789999999999999999999999999865554321 112223 57888888877 77
Q ss_pred ccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCe
Q psy8076 476 RAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGY 555 (737)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~ 555 (737)
|+|++|++++.|+.|||+++|+-.++++.|||++++.+.+.+. .+||
T Consensus 353 -------------------------------i~d~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~--~~g~ 399 (517)
T PRK08008 353 -------------------------------IRDDHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLE--ADGW 399 (517)
T ss_pred -------------------------------EECCCCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhccc--CCCC
Confidence 9999999999999999999984222899999999999877763 3789
Q ss_pred eecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCc
Q psy8076 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGF 635 (737)
Q Consensus 556 ~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~ 635 (737)
|+|||+|++|+||+++++||.||+||++|++|+|.|||+++.+||.|.+++|++++++..++.+.++|+++.+
T Consensus 400 ~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~------- 472 (517)
T PRK08008 400 LHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEG------- 472 (517)
T ss_pred eeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCC-------
Confidence 9999999999999999999999999999999999999999999999999999999998888889999998764
Q ss_pred cccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHH
Q psy8076 636 SGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARK 715 (737)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~ 715 (737)
. ....++|+++++++++.+++|..++++++||+|++||++|+
T Consensus 473 -----~---------------------------------~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~gK~~r~ 514 (517)
T PRK08008 473 -----E---------------------------------TLSEEEFFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKK 514 (517)
T ss_pred -----C---------------------------------CCCHHHHHHHHHhhcccccCCcEEEEeccCCCCCccceehh
Confidence 1 01246899999999999999999999999999999999999
Q ss_pred HHH
Q psy8076 716 SIV 718 (737)
Q Consensus 716 ~l~ 718 (737)
.|+
T Consensus 515 ~l~ 517 (517)
T PRK08008 515 NLK 517 (517)
T ss_pred hcC
Confidence 874
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-65 Score=589.53 Aligned_cols=535 Identities=18% Similarity=0.200 Sum_probs=388.3
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCC---CCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHH
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPV---TKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLAT 154 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~---~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~ 154 (737)
++.++++++++++ |+++|+++.+.. .+..+.+||+||.++++++|++|.+. +++||+|+++++|++++++++|||
T Consensus 35 ~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~lA~ 112 (612)
T PRK12476 35 TLISLIERNIANV-GDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFFAA 112 (612)
T ss_pred cHHHHHHHHHHhC-CCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHHHH
Confidence 3677888888887 999999985421 23356899999999999999999987 999999999999999999999999
Q ss_pred HHcCCEEEec-CCCCC--HHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCC-CCCeEEEEecccccccc
Q psy8076 155 VRLGAIHSVV-FGGFA--ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSC-KPDYCIIFQRRCVEEAE 230 (737)
Q Consensus 155 ~~~G~~~vpl-~~~~~--~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~viv~~~~~~~~~~ 230 (737)
+++|++++|+ ++.++ .+++.+++++++++++|+++.. ...+......++. ....++.+...
T Consensus 113 ~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~------ 177 (612)
T PRK12476 113 IKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAA---------AEAVEGFLRNLPRLRRPRVIAIDAI------ 177 (612)
T ss_pred HHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHH---------HHHHHHHHhhcccccCceEEEeccc------
Confidence 9999999999 57776 7899999999999999997642 2222222222221 11233333211
Q ss_pred cCCCCcccHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhc-CC
Q psy8076 231 LTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYN-MG 309 (737)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~-~~ 309 (737)
.. ............++++++|+||||||| .||||+++|++++.+... ....++ +.
T Consensus 178 -~~----------~~~~~~~~~~~~~~d~a~i~yTSGTTG------------~PKgV~~sh~~l~~~~~~-~~~~~~~~~ 233 (612)
T PRK12476 178 -PD----------SAGESFVPVELDTDDVSHLQYTSGSTR------------PPVGVEITHRAVGTNLVQ-MILSIDLLD 233 (612)
T ss_pred -cc----------cccccccCCCCCCCceEEEEeCCCCCC------------CCceEEeeHHHHHHHHHH-HHHHhccCC
Confidence 00 000011122356789999999999999 999999999887655443 334466 78
Q ss_pred CCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHH--hcCCcEEeecHHHHHHHHHcCCCCcc
Q psy8076 310 QDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIH--NHKVNGLFTAPTALRVIRREDKDSTL 387 (737)
Q Consensus 310 ~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~--~~~vt~l~~~P~~~~~l~~~~~~~~~ 387 (737)
+++++++++|++|..|+... +.+++.|+++++...... ..++..|++.++ ++++|++..+|+++..+.........
T Consensus 234 ~~~~~l~~~Pl~h~~g~~~~-~~~~~~gg~~~~~~~~~~-~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~ 311 (612)
T PRK12476 234 RNTHGVSWLPLYHDMGLSMI-GFPAVYGGHSTLMSPTAF-VRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAE 311 (612)
T ss_pred CCceEEEeCCcccccchHHH-HHHHhcCCeEEEECHHHH-HHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhh
Confidence 89999999999999997653 444445556655542111 237899999995 58999999999998877654211000
Q ss_pred ccCCCCCCccEEEeecCCCCHHHHHHHHHhc---CC---cccccccccccccccccccccCCCCCCCCCCccCCCcCCCC
Q psy8076 388 GAQYSTDSLRYLFVAGEHCDHETKNWAEKSF---NV---TMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYD 461 (737)
Q Consensus 388 ~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~---~~---~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~ 461 (737)
....++++|| +++||+++++++.++|.+.+ |. .+++.||+||++..++.... ... + .
T Consensus 312 ~~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~--~~~---~-~---------- 374 (612)
T PRK12476 312 GDDIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAP--DAE---P-S---------- 374 (612)
T ss_pred hcCcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCC--CCC---c-e----------
Confidence 1234688999 99999999999999999877 43 48999999999755443211 000 0 0
Q ss_pred CCcceeeeecc-ccCccccccccccccccCCCCCCCCcccccceEEEEcCC-CCccCCCcceEEEEecCCCCCccccccc
Q psy8076 462 GKYVNIVMLNW-LDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRND-GSECEPHELGRIVVKLPLPPGTMSTLYK 539 (737)
Q Consensus 462 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~-g~~~~~g~~GEL~i~g~~~~~~~~gy~~ 539 (737)
...++. .-..+.++++... .+.....+..|.++++++++|+|++ |+++|.|+.|||+|+|| +++.|||+
T Consensus 375 -----~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~---~v~~GY~~ 445 (612)
T PRK12476 375 -----VVYLDREQLGAGRAVRVAAD-APNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGD---NIGRGYWG 445 (612)
T ss_pred -----EEEEcHHHhhCCCeeecCCC-CCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcCC---cccccccC
Confidence 000000 0000011111111 1112223456777777777799987 99999999999999999 99999999
Q ss_pred ChhhhHHhhcc----------------CCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhc-CCCc
Q psy8076 540 APQRFMKIYFT----------------KFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLS-HPDV 602 (737)
Q Consensus 540 ~~~~~~~~~~~----------------~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~-~p~V 602 (737)
+++.+.+.|.. ..++||+|||+|++ .||+|+|+||+||+||++|++|+|.|||++|.+ ||.|
T Consensus 446 ~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~-~dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V 524 (612)
T PRK12476 446 RPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVY-LDGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMV 524 (612)
T ss_pred ChHHHHHHHhhhhccccccccccccccCCCCeeecccccee-ECCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccc
Confidence 99999888742 12359999999998 599999999999999999999999999999985 8999
Q ss_pred ce--eEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHH
Q psy8076 603 GD--TAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKE 680 (737)
Q Consensus 603 ~~--a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (737)
.+ ++|++++++. ++.++++++++++ .. ....++
T Consensus 525 ~~~~v~v~~~~~~~-~~~~~~~v~~~~~------------~~--------------------------------~~~~~~ 559 (612)
T PRK12476 525 RRGYVTAFTVPAED-NERLVIVAERAAG------------TS--------------------------------RADPAP 559 (612)
T ss_pred cCCcEEEEEecCCC-cceEEEEEEecCC------------cc--------------------------------cccHHH
Confidence 99 7778888776 7889999988754 10 011234
Q ss_pred HHHHHHHhcC-Ccee-eeeEEEcC--CCCCCCCchhhHHHHHHHHcCCCCC
Q psy8076 681 LKELVREAIG-PIAA-FKLSTSVT--GLPRTRSGKTARKSIVDMARNKPLR 727 (737)
Q Consensus 681 l~~~l~~~l~-~~~~-p~~~~~v~--~lP~t~sGKi~R~~l~~~~~~~~~~ 727 (737)
|.+++++++. .+++ |..+++++ +||+|++||++|++|++++.++.++
T Consensus 560 l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~~~~~~ 610 (612)
T PRK12476 560 AIDAIRAAVSRRHGLAVADVRLVPAGAIPRTTSGKLARRACRAQYLDGRLG 610 (612)
T ss_pred HHHHHHHHHHHhhCCcceEEEEECCCCcCcCCchHHHHHHHHHHHHcCCCC
Confidence 4445555544 3566 57777776 6999999999999999999887653
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-64 Score=577.49 Aligned_cols=516 Identities=24% Similarity=0.295 Sum_probs=424.3
Q ss_pred CchhHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHH
Q psy8076 74 GEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153 (737)
Q Consensus 74 ~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA 153 (737)
.+.|. .+.++++++.. |+++|+.+.+ +.+||.||+++++++|++|.+.|+++|++|+|+++|+++++++++|
T Consensus 15 ~~~n~-~~~~~~~a~~~-~~~~a~~~~~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a 86 (542)
T PRK07786 15 RRQNW-VNQLARHALMQ-PDAPALRFLG------NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLA 86 (542)
T ss_pred cccCH-HHHHHHHHHHC-CCCeEEEeCC------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 34454 56677888887 9999999886 7999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCC
Q psy8076 154 TVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTP 233 (737)
Q Consensus 154 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~ 233 (737)
|+++|++++|+++..+.+++..+++++++++++++... ...+.......+ ..+.++++... ..
T Consensus 87 ~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~-------~~ 149 (542)
T PRK07786 87 ANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAAL---------APVATAVRDIVP-LLSTVVVAGGS-------SD 149 (542)
T ss_pred HHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccch---------HHHHHHhhhccC-ccceEEEecCC-------Cc
Confidence 99999999999999999999999999999999998642 222222222222 45555554321 01
Q ss_pred CCcccHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcC-CCC
Q psy8076 234 GYDILWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNM-GQD 311 (737)
Q Consensus 234 ~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~-~~~ 311 (737)
.....+.++...... ........+++++++||||||| .||||+++|++++..... ....+++ ..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PK~v~~s~~~l~~~~~~-~~~~~~~~~~~ 216 (542)
T PRK07786 150 DSVLGYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTG------------RPKGAVLTHANLTGQAMT-CLRTNGADINS 216 (542)
T ss_pred ccccCHHHHhhccCCCCCCCCCCCCCeEEEEeCCCCCc------------cchhhhhhHHHHHHHHHH-HHHhcCCCCCC
Confidence 122445555443322 2223456678999999999999 999999999987665554 3444566 678
Q ss_pred cEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCC
Q psy8076 312 DVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQY 391 (737)
Q Consensus 312 d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~ 391 (737)
++++...|++|.+|+ ..++.++..|+++++.+.. ..++..+++.|+++++|+++++|+++..|...... ...
T Consensus 217 ~~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~----~~~ 288 (542)
T PRK07786 217 DVGFVGVPLFHIAGI-GSMLPGLLLGAPTVIYPLG---AFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQA----RPR 288 (542)
T ss_pred ceEEEecchHHHHHH-HHHHHHHHccCEEEEccCC---CcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCccc----Ccc
Confidence 899999999998886 5588999999999997532 35899999999999999999999999999876442 122
Q ss_pred CCCCccEEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeee
Q psy8076 392 STDSLRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVML 470 (737)
Q Consensus 392 ~l~~Lr~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~ 470 (737)
+ .++|.+++||+++++++++++.+.+ +.++++.||+||++...+.... ......+ .++|+|++++. ++
T Consensus 289 ~-~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~--~~~~~~~-~~~G~~~~~~~-----~~-- 357 (542)
T PRK07786 289 D-LALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLG--EDAIRKL-GSVGKVIPTVA-----AR-- 357 (542)
T ss_pred C-cceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCc--ccccccC-CCccccCCCce-----EE--
Confidence 2 3799999999999999999999988 6889999999999865443211 1111233 67888888887 77
Q ss_pred ccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhcc
Q psy8076 471 NWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFT 550 (737)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~ 550 (737)
|+|+++++++.|+.|||+++|+ .++.||+++++.+.+.| .
T Consensus 358 ------------------------------------i~d~~~~~~~~g~~Gel~v~g~---~~~~gy~~~~~~~~~~f-~ 397 (542)
T PRK07786 358 ------------------------------------VVDENMNDVPVGEVGEIVYRAP---TLMSGYWNNPEATAEAF-A 397 (542)
T ss_pred ------------------------------------EECCCCCCCcCCCceEEEEECh---hhhhhhcCCHHHHHHHh-h
Confidence 9999999999999999999999 99999999999887766 2
Q ss_pred CCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCC
Q psy8076 551 KFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPL 630 (737)
Q Consensus 551 ~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~ 630 (737)
+|||+|||+++++.+|.++++||.||+||++|++|++.|||++|.+||.|.+++|++.+++..++.++++++....
T Consensus 398 --~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-- 473 (542)
T PRK07786 398 --GGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRND-- 473 (542)
T ss_pred --CCcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCC--
Confidence 6899999999999999999999999999999999999999999999999999999999888778888999887654
Q ss_pred CcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCc
Q psy8076 631 DKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSG 710 (737)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sG 710 (737)
. .....++++++++++++.|+.|..++++++||+|++|
T Consensus 474 ----------~--------------------------------~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~G 511 (542)
T PRK07786 474 ----------D--------------------------------AALTLEDLAEFLTDRLARYKHPKALEIVDALPRNPAG 511 (542)
T ss_pred ----------C--------------------------------CCCCHHHHHHHHHhhccCCCCCCEEEEeccCCCCCcc
Confidence 1 0112568999999999999999999999999999999
Q ss_pred hhhHHHHHHHHcCCCCCchhhh
Q psy8076 711 KTARKSIVDMARNKPLRVRLVY 732 (737)
Q Consensus 711 Ki~R~~l~~~~~~~~~~~~~~~ 732 (737)
|++|++|++++.+....++..|
T Consensus 512 Kv~r~~L~~~~~~~~~~~~~~~ 533 (542)
T PRK07786 512 KVLKTELRERYGACVNVERRSA 533 (542)
T ss_pred cccHHHHHHHHHhhhchhhccc
Confidence 9999999999999877766554
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-64 Score=579.33 Aligned_cols=529 Identities=19% Similarity=0.277 Sum_probs=399.1
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcC
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 158 (737)
..++|+++++.+ |+++|+++.+ .++||+||+++++++|++|.++|+++||+|+|+++|++++++++|||+++|
T Consensus 16 ~~~~l~~~~~~~-p~~~Al~~~~------~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G 88 (579)
T PLN03102 16 PITFLKRASECY-PNRTSIIYGK------TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAG 88 (579)
T ss_pred HHHHHHHHHHhC-CCCeEEEECC------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence 577888899887 9999999875 789999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCC----CCCeEEEEecccccccccCCC
Q psy8076 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSC----KPDYCIIFQRRCVEEAELTPG 234 (737)
Q Consensus 159 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~viv~~~~~~~~~~~~~~ 234 (737)
++++|++|.++.+++.++++.++++++|+++.. ...+.++...++. ....+++++...... ....
T Consensus 89 ~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 157 (579)
T PLN03102 89 AVLNPINTRLDATSIAAILRHAKPKILFVDRSF---------EPLAREVLHLLSSEDSNLNLPVIFIHEIDFPK--RPSS 157 (579)
T ss_pred cEEeeccccCCHHHHHHHHhccCCeEEEEChhh---------HHHHHHHHhhccccccccCceEEEeccccccc--CCcc
Confidence 999999999999999999999999999997652 2233333332220 112334433211100 0111
Q ss_pred CcccHHHHHhhcCCCC------CccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcC
Q psy8076 235 YDILWDDALAQRLSHR------CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNM 308 (737)
Q Consensus 235 ~~~~~~~~~~~~~~~~------~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~ 308 (737)
....+.++........ .....++++++|+||||||| .||||+++|+++...... ....+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG------------~PK~v~~s~~~~~~~~~~-~~~~~~~ 224 (579)
T PLN03102 158 EELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTA------------DPKGVVISHRGAYLSTLS-AIIGWEM 224 (579)
T ss_pred cccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCC------------CCCEEEEecHHHHHHHHH-HHhhcCC
Confidence 2334555543322211 12245689999999999999 999999999886544333 2233556
Q ss_pred CCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccc
Q psy8076 309 GQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLG 388 (737)
Q Consensus 309 ~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~ 388 (737)
...++++..+|++|..++.. .+.++..|++++++.. +++..+++.|+++++|++.++|+++..|.+....
T Consensus 225 ~~~~~~l~~~pl~h~~g~~~-~~~~~~~g~~~v~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---- 294 (579)
T PLN03102 225 GTCPVYLWTLPMFHCNGWTF-TWGTAARGGTSVCMRH-----VTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSL---- 294 (579)
T ss_pred CCCCeEEecCChhhhcchhH-HHHHHHhcCcEEeecc-----CChHHHHHHHHHcCCeEEEeChHHHHHHHhCccc----
Confidence 77889999999999988654 5778889999988763 5788899999999999999999999999876432
Q ss_pred cCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceee
Q psy8076 389 AQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIV 468 (737)
Q Consensus 389 ~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~ 468 (737)
.....++++.+++||+++++.+.+++.+ +|.++++.||+||+++.++...... .....+ ...+. . ..
T Consensus 295 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~~-~~~~~~---~~~~~---~-----~~ 361 (579)
T PLN03102 295 DLSPRSGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQD-EWNRLP---ENQQM---E-----LK 361 (579)
T ss_pred ccCCcccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCcccccccccc-ccccCC---ccccc---c-----cc
Confidence 2224567888999999999999998875 6899999999999986544321100 000000 00000 0 00
Q ss_pred eeccccCccccccccccccccCCCCCCCCcccccceEEEEc-CCCCccCC--CcceEEEEecCCCCCcccccccChhhhH
Q psy8076 469 MLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEP--HELGRIVVKLPLPPGTMSTLYKAPQRFM 545 (737)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~--g~~GEL~i~g~~~~~~~~gy~~~~~~~~ 545 (737)
...|..+.+.+ .+.++| +.+++++. ++.|||+|+|| +++.|||++++.+.
T Consensus 362 ----------------------~~~g~~~~~~~--~v~i~~~~~~~~v~~~~~~~GEl~v~g~---~~~~GY~~~~~~t~ 414 (579)
T PLN03102 362 ----------------------ARQGVSILGLA--DVDVKNKETQESVPRDGKTMGEIVIKGS---SIMKGYLKNPKATS 414 (579)
T ss_pred ----------------------cCCCccccccc--ceEEeccccccccCCCCCCceEEEEECc---chhhhhcCChhhhH
Confidence 00011111111 122677 45677765 36899999999 99999999999888
Q ss_pred HhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEe
Q psy8076 546 KIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIK 625 (737)
Q Consensus 546 ~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~ 625 (737)
+.| . +|||+|||+|++|+||+++|.||.||+||++|++|+|.|||++|.+||.|.+++|++++++..++.++++|++
T Consensus 415 ~~f-~--~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~ 491 (579)
T PLN03102 415 EAF-K--HGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVL 491 (579)
T ss_pred hhh-c--cCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEe
Confidence 765 2 6899999999999999999999999999999999999999999999999999999999999888999999998
Q ss_pred ecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCC
Q psy8076 626 KRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLP 705 (737)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP 705 (737)
.++.....+ . . ........+++++++++|+.|++|..++++++||
T Consensus 492 ~~~~~~~~~---~--~------------------------------~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~~P 536 (579)
T PLN03102 492 EKGETTKED---R--V------------------------------DKLVTRERDLIEYCRENLPHFMCPRKVVFLQELP 536 (579)
T ss_pred cCccccccc---c--c------------------------------ccccccHHHHHHHHHhhcccccCCeEEEEcccCC
Confidence 764100000 0 0 0000124679999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHcCCCC
Q psy8076 706 RTRSGKTARKSIVDMARNKPL 726 (737)
Q Consensus 706 ~t~sGKi~R~~l~~~~~~~~~ 726 (737)
+|++||++|++|++++.+...
T Consensus 537 ~t~~gKi~r~~L~~~~~~~~~ 557 (579)
T PLN03102 537 KNGNGKILKPKLRDIAKGLVV 557 (579)
T ss_pred CCCcccccHHHHHHHHHHhhh
Confidence 999999999999999876433
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-64 Score=569.28 Aligned_cols=478 Identities=25% Similarity=0.374 Sum_probs=403.2
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.+.|++++.+. ||++|+++.+ +.+||+||+++++++|++|.+.|+++|++|+++++|++++++++|||+++
T Consensus 3 ~~~~~l~~~a~~~-p~~~a~~~~~------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~ 75 (483)
T PRK03640 3 TMPNWLKQRAFLT-PDRTAIEFEE------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQL 75 (483)
T ss_pred cHHHHHHHHHHhC-CCceEEEeCC------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhC
Confidence 4678999999998 9999999876 89999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|+++.++.+++..++++++++++++++.... .... .. ..
T Consensus 76 G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~---------~~~~----~~-----------------------~~ 119 (483)
T PRK03640 76 GAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEA---------KLIP----GI-----------------------SV 119 (483)
T ss_pred CcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhH---------HHhh----hc-----------------------cc
Confidence 999999999999999999999999999999864211 1000 00 00
Q ss_pred cHHHHHhhcC--CCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEE
Q psy8076 238 LWDDALAQRL--SHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWW 315 (737)
Q Consensus 238 ~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l 315 (737)
.+.+...... ........++++++++||||||| .||+|+++|++++..... ....++++.+|+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG------------~PK~v~~s~~~~~~~~~~-~~~~~~~~~~d~~l 186 (483)
T PRK03640 120 KFAELMNGPKEEAEIQEEFDLDEVATIMYTSGTTG------------KPKGVIQTYGNHWWSAVG-SALNLGLTEDDCWL 186 (483)
T ss_pred cHHHHhhcccccCCCCCCCCCCCeEEEEeCCCcCC------------CCcEEEEecHHHHHHHHH-HHHhcCCCcCcEEE
Confidence 1222221111 11222356789999999999999 999999999887766544 34457899999999
Q ss_pred EecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCC
Q psy8076 316 TASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395 (737)
Q Consensus 316 ~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~ 395 (737)
+.+|++|+.++.. ++.++..|+++++.+. .++..+++.++++++|++.++|+++..|....... ....+
T Consensus 187 ~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-----~~~~~ 255 (483)
T PRK03640 187 AAVPIFHISGLSI-LMRSVIYGMRVVLVEK-----FDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-----TYPSS 255 (483)
T ss_pred EecCHHHHHHHHH-HHHHHhcCCEEEecCC-----CCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-----ccCCc
Confidence 9999999988654 7888999999999873 68999999999999999999999999998654321 23468
Q ss_pred ccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccC
Q psy8076 396 LRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDG 475 (737)
Q Consensus 396 Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~ 475 (737)
||.+++||+++++++.+++.+ +++++++.||+||++..++.... ......+ +++|+|++++. ++
T Consensus 256 lr~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~--~~~~~~~-~~vG~p~~~~~-----~~------- 319 (483)
T PRK03640 256 FRCMLLGGGPAPKPLLEQCKE-KGIPVYQSYGMTETASQIVTLSP--EDALTKL-GSAGKPLFPCE-----LK------- 319 (483)
T ss_pred ceEEEEcCCCCCHHHHHHHHH-hCCCeeeeeccCcccccccccCc--ccccccC-CCcccccCCcE-----EE-------
Confidence 999999999999999998886 48999999999999754433221 1122334 78899999888 77
Q ss_pred ccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCe
Q psy8076 476 RAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGY 555 (737)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~ 555 (737)
|.|+ +++++.|+.|||+|+|| +++.||+++++.+.+.| .+||
T Consensus 320 -------------------------------i~~~-~~~~~~g~~Gel~v~g~---~~~~gy~~~~~~~~~~~---~~~~ 361 (483)
T PRK03640 320 -------------------------------IEKD-GVVVPPFEEGEIVVKGP---NVTKGYLNREDATRETF---QDGW 361 (483)
T ss_pred -------------------------------EecC-CCcCCCCCceEEEEECc---chhhhhcCCHHHHHHHH---hcCC
Confidence 8886 48999999999999999 99999999998887765 2789
Q ss_pred eecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCc
Q psy8076 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGF 635 (737)
Q Consensus 556 ~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~ 635 (737)
|+|||++++++||++++.||+||++|++|.+|++.|||+.+.++++|.+++|++.+++..++.++++++....
T Consensus 362 ~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~------- 434 (483)
T PRK03640 362 FKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGE------- 434 (483)
T ss_pred eeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCC-------
Confidence 9999999999999999999999999999999999999999999999999999999988778888888875443
Q ss_pred cccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHH
Q psy8076 636 SGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARK 715 (737)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~ 715 (737)
. ..+++++++++.|+.+++|..++++++||+|++||++|+
T Consensus 435 -----~-----------------------------------~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gK~~r~ 474 (483)
T PRK03640 435 -----V-----------------------------------TEEELRHFCEEKLAKYKVPKRFYFVEELPRNASGKLLRH 474 (483)
T ss_pred -----C-----------------------------------CHHHHHHHHHHhccCCCCCcEEEEeCCCCCCCccceeHH
Confidence 1 146788999999999999999999999999999999999
Q ss_pred HHHHHHcC
Q psy8076 716 SIVDMARN 723 (737)
Q Consensus 716 ~l~~~~~~ 723 (737)
+|++++.+
T Consensus 475 ~l~~~~~~ 482 (483)
T PRK03640 475 ELKQLVEE 482 (483)
T ss_pred HHHHHHhh
Confidence 99999864
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-64 Score=574.29 Aligned_cols=508 Identities=25% Similarity=0.319 Sum_probs=421.8
Q ss_pred hhHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHH
Q psy8076 76 INACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATV 155 (737)
Q Consensus 76 ~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~ 155 (737)
.+++.++|.++++.+ |+++|+++.+ +.+||+||.+++.++|+.|.+.|+++|++|+++++|+.+++++++||+
T Consensus 10 ~~~l~~~l~~~a~~~-~~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~ 82 (523)
T PRK08316 10 RQTIGDILRRSARRY-PDKTALVFGD------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACA 82 (523)
T ss_pred CCCHHHHHHHHHHHC-CCCeEEEECC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 346889999999888 9999999886 899999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCC
Q psy8076 156 RLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGY 235 (737)
Q Consensus 156 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~ 235 (737)
++|++++|+++.++.+++..+++.+++++++++... ...+........ ...+...... ........
T Consensus 83 ~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~ 148 (523)
T PRK08316 83 RAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPAL---------APTAEAALALLP--VDTLILSLVL---GGREAPGG 148 (523)
T ss_pred hcCcEEEecccccCHHHHHHHHHhCCCCEEEEccch---------HHHHHHHhhhcC--ccceeeeecc---cccccccc
Confidence 999999999999999999999999999999998753 222333222222 1111111100 00111112
Q ss_pred cccHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEE
Q psy8076 236 DILWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVW 314 (737)
Q Consensus 236 ~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~ 314 (737)
...+.+....... ........+++++++||||||| .||+|.++|++++...... ...++++++|++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG------------~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~ 215 (523)
T PRK08316 149 WLDFADWAEAGSVAEPDVELADDDLAQILYTSGTES------------LPKGAMLTHRALIAEYVSC-IVAGDMSADDIP 215 (523)
T ss_pred hhhHHHHHhcCCCccCccCCCCCCeEEEEeCCCCCC------------CCcEEEEecHHHHHHHHHH-HHHhCCCCCceE
Confidence 2344444333222 1233467789999999999999 9999999998876665543 445789999999
Q ss_pred EEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCC
Q psy8076 315 WTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTD 394 (737)
Q Consensus 315 l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~ 394 (737)
+..+|++|..++...++.++..|+++++.+. .++..+++.++++++|++.++|+++..|.+.... ...+++
T Consensus 216 ~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~~~ 286 (523)
T PRK08316 216 LHALPLYHCAQLDVFLGPYLYVGATNVILDA-----PDPELILRTIEAERITSFFAPPTVWISLLRHPDF----DTRDLS 286 (523)
T ss_pred EEccCCchhhhHHHHHHHHHhcCceEEEecC-----CCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCccc----ccCCcc
Confidence 9999999999876656778899999999863 5899999999999999999999999999876543 345678
Q ss_pred CccEEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccc
Q psy8076 395 SLRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWL 473 (737)
Q Consensus 395 ~Lr~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~ 473 (737)
++|.+++||+.++.++.+.+.+.+ +.++++.||+||++.+.+.... ....... +++|+|++++. ++
T Consensus 287 ~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~--~~~~~~~-~~~G~~~~~~~-----~~----- 353 (523)
T PRK08316 287 SLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGP--EEHLRRP-GSAGRPVLNVE-----TR----- 353 (523)
T ss_pred cceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCc--ccccccc-CCcccCCCCcE-----EE-----
Confidence 999999999999999999999988 6899999999999876554322 1122233 67888888877 77
Q ss_pred cCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCC
Q psy8076 474 DGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFP 553 (737)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~ 553 (737)
|+|++|++++.|+.|||+++|+ +++.||+++++.+.+.| .+
T Consensus 354 ---------------------------------i~~~~~~~~~~g~~Gei~v~~~---~~~~~y~~~~~~~~~~~---~~ 394 (523)
T PRK08316 354 ---------------------------------VVDDDGNDVAPGEVGEIVHRSP---QLMLGYWDDPEKTAEAF---RG 394 (523)
T ss_pred ---------------------------------EEcCCCCCCCCCCcceEEEECC---chhhhhcCCHHHHHHHh---hC
Confidence 9999999999999999999999 99999999998887775 27
Q ss_pred CeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcC
Q psy8076 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKM 633 (737)
Q Consensus 554 g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~ 633 (737)
|||+|||+|++++||.+++.||.||+||++|++|+|.+||+.|.++++|.+++|++.+++..++.++++++..+.
T Consensus 395 ~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~----- 469 (523)
T PRK08316 395 GWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAG----- 469 (523)
T ss_pred CCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCC-----
Confidence 899999999999999999999999999999999999999999999999999999999999888899999998764
Q ss_pred CccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhh
Q psy8076 634 GFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTA 713 (737)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~ 713 (737)
. ....++++++++++|+.+++|..+++++++|+|++||++
T Consensus 470 -------~---------------------------------~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gKi~ 509 (523)
T PRK08316 470 -------A---------------------------------TVTEDELIAHCRARLAGFKVPKRVIFVDELPRNPSGKIL 509 (523)
T ss_pred -------C---------------------------------CCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCCcccee
Confidence 1 012466888899999999999999999999999999999
Q ss_pred HHHHHHHHcC
Q psy8076 714 RKSIVDMARN 723 (737)
Q Consensus 714 R~~l~~~~~~ 723 (737)
|++|+++|.+
T Consensus 510 r~~l~~~~~~ 519 (523)
T PRK08316 510 KRELRERYAG 519 (523)
T ss_pred HHHHHHHHHh
Confidence 9999999864
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-65 Score=600.61 Aligned_cols=495 Identities=19% Similarity=0.261 Sum_probs=392.7
Q ss_pred HHHHHHhhhhhccCCC-ceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHH
Q psy8076 78 ACYNAIDRHVERGMAK-KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVR 156 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd-~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~ 156 (737)
++.++|+++++++ |+ ++|+.+.+ .+.+||+||.++++++|++|.+. +++||+|+++++|++|+++++|||++
T Consensus 205 t~~~~l~~~~~~~-p~~~~a~~~~~-----~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~ 277 (718)
T PRK08043 205 TLYEALLSAQYRY-GAGKPCIEDVN-----FTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASL 277 (718)
T ss_pred CHHHHHHHHHHHh-CCCCcceEcCC-----CCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHH
Confidence 3678888999888 98 57876422 36899999999999999999987 59999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCc
Q psy8076 157 LGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYD 236 (737)
Q Consensus 157 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~ 236 (737)
+|++++|+++.++.+++.+++++++++++++++......+... +. ..++ .. .++++... .. .
T Consensus 278 ~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~----~~---~~~~-~~-~~i~~~~~--~~-------~ 339 (718)
T PRK08043 278 RRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWH----LP---EQLT-QV-RWVYLEDL--KD-------D 339 (718)
T ss_pred cCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCC----hh---hhhc-cc-cEEEhhhh--hh-------h
Confidence 9999999999999999999999999999999865322110000 00 0011 11 12222110 00 0
Q ss_pred ccHHHH----Hhh-cCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCC
Q psy8076 237 ILWDDA----LAQ-RLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQD 311 (737)
Q Consensus 237 ~~~~~~----~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~ 311 (737)
..+.+. ... .......+..++++++++||||||| .||||+++|++++....+ +...++++++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgv~~sh~~l~~~~~~-~~~~~~~~~~ 406 (718)
T PRK08043 340 VTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEG------------HPKGVVHSHKSLLANVEQ-IKTIADFTPN 406 (718)
T ss_pred cchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCC------------CCCEEEEcHHHHHHHHHH-HHHhhCCCcc
Confidence 011110 000 0111112356799999999999999 999999999987666554 4456789999
Q ss_pred cEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCC
Q psy8076 312 DVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQY 391 (737)
Q Consensus 312 d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~ 391 (737)
|++++.+|++|.+++...++.+|..|+++++.+. ..++..+++.++++++|+++++|+++..+.+.. ...
T Consensus 407 d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~----~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~------~~~ 476 (718)
T PRK08043 407 DRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPS----PLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA------NPY 476 (718)
T ss_pred CeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCC----cccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc------Ccc
Confidence 9999999999999987778899999999998864 246678899999999999999999998876542 234
Q ss_pred CCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeec
Q psy8076 392 STDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLN 471 (737)
Q Consensus 392 ~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~ 471 (737)
++++||.+++||+++++++.++|.+.+|+++++.||+||+++.++... ....++ +++|+|+||++ ++
T Consensus 477 ~~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~----~~~~~~-~svG~p~pg~~-----~~--- 543 (718)
T PRK08043 477 DFARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINV----PMAAKP-GTVGRILPGMD-----AR--- 543 (718)
T ss_pred cccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecC----CcccCC-CCCCCcCCCCe-----eE---
Confidence 678999999999999999999999999999999999999986655432 112344 78999999988 77
Q ss_pred cccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCccccccc--Chhhh-----
Q psy8076 472 WLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYK--APQRF----- 544 (737)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~--~~~~~----- 544 (737)
|+|++|. ++.|||+++|+ +++.|||+ +++.+
T Consensus 544 -----------------------------------i~d~~~~----~~~Gel~v~g~---~v~~GY~~~e~~~~~~~~~~ 581 (718)
T PRK08043 544 -----------------------------------LLSVPGI----EQGGRLQLKGP---NIMNGYLRVEKPGVLEVPTA 581 (718)
T ss_pred -----------------------------------EecCCCC----CCceEEEEecC---CccccccCCCCccccccccc
Confidence 9887653 46699999999 99999998 34421
Q ss_pred --HHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEE
Q psy8076 545 --MKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCL 622 (737)
Q Consensus 545 --~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~ 622 (737)
.+.++ .+|||+|||+|++|+||+++|+||.||+||++|++|+|.|||+++.+|+.+.+++|++.+++..++.++++
T Consensus 582 ~~~~~~~--~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~ 659 (718)
T PRK08043 582 ENARGEM--ERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLF 659 (718)
T ss_pred ccccccc--cCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEE
Confidence 11111 26899999999999999999999999999999999999999999999998888899999888888888877
Q ss_pred EEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHh-cCCceeeeeEEEc
Q psy8076 623 YIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREA-IGPIAAFKLSTSV 701 (737)
Q Consensus 623 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~v 701 (737)
+... . ...++++++++++ |+.|++|+.++++
T Consensus 660 ~~~~-~-----------------------------------------------~~~~~l~~~~~~~~l~~~~vP~~i~~v 691 (718)
T PRK08043 660 TTDS-E-----------------------------------------------LTREKLQQYAREHGVPELAVPRDIRYL 691 (718)
T ss_pred EcCc-c-----------------------------------------------cCHHHHHHHHHhcCCCcccCCceEEEe
Confidence 6421 1 1245789999887 9999999999999
Q ss_pred CCCCCCCCchhhHHHHHHHHcCCC
Q psy8076 702 TGLPRTRSGKTARKSIVDMARNKP 725 (737)
Q Consensus 702 ~~lP~t~sGKi~R~~l~~~~~~~~ 725 (737)
++||+|++||+||++|++++.+.+
T Consensus 692 ~~lP~t~~GKi~r~~L~~~~~~~~ 715 (718)
T PRK08043 692 KQLPLLGSGKPDFVTLKSMVDEPE 715 (718)
T ss_pred cccCcCCCCCcCHHHHHHHHhccc
Confidence 999999999999999999987654
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-65 Score=581.20 Aligned_cols=502 Identities=19% Similarity=0.275 Sum_probs=408.2
Q ss_pred hHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHH
Q psy8076 77 NACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVR 156 (737)
Q Consensus 77 n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~ 156 (737)
+++.+++.++++.+ |+++|+++... .+.+||+||.++++++|+.|.+.|+++|++|+++++|++++++++|||++
T Consensus 28 ~~~~~~l~~~a~~~-p~~~a~~~~~~----~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 102 (546)
T PLN02330 28 LTLPDFVLQDAELY-ADKVAFVEAVT----GKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMA 102 (546)
T ss_pred CcHHHHHhhhhhcC-CCccEEEecCC----CCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHH
Confidence 35778888999888 99999987421 26899999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCc
Q psy8076 157 LGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYD 236 (737)
Q Consensus 157 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~ 236 (737)
+|++++|+++.++.+++.+++++++++++++++..... +.. . . ..++++.... ....
T Consensus 103 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~---------~~~----~--~-~~~i~~~~~~-------~~~~ 159 (546)
T PLN02330 103 AGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGK---------VKG----L--G-LPVIVLGEEK-------IEGA 159 (546)
T ss_pred hCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhh---------Hhh----c--C-CcEEEecCCC-------CCCc
Confidence 99999999999999999999999999999998763321 111 1 1 1233332210 1123
Q ss_pred ccHHHHHhhcCC----CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCC---
Q psy8076 237 ILWDDALAQRLS----HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMG--- 309 (737)
Q Consensus 237 ~~~~~~~~~~~~----~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~--- 309 (737)
..|.++...... .......++++++++||||||| .||||+++|++++.+.... .+++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG------------~PKgv~~s~~~l~~~~~~~---~~~~~~~~ 224 (546)
T PLN02330 160 VNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTG------------ISKGVMLTHRNLVANLCSS---LFSVGPEM 224 (546)
T ss_pred ccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcC------------CCcEEEEehHHHHHHHHHH---hhccCccc
Confidence 445555543221 1223355789999999999999 9999999999877655432 23332
Q ss_pred -CCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccc
Q psy8076 310 -QDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLG 388 (737)
Q Consensus 310 -~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~ 388 (737)
..++++...|++|.+++...++.+|..|+++++.+. .++..+++.++++++|.+.++|+++..+.+....
T Consensus 225 ~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~-----~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---- 295 (546)
T PLN02330 225 IGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSR-----FELRTFLNALITQEVSFAPIVPPIILNLVKNPIV---- 295 (546)
T ss_pred cCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecc-----cCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccc----
Confidence 346889999999998877667889999999998863 6899999999999999999999999999875432
Q ss_pred cCCCCC--CccEEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCC-CCCCCCccCCCcCCCCCCc
Q psy8076 389 AQYSTD--SLRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHD-TVPPKYSTGLPFPGYDGKY 464 (737)
Q Consensus 389 ~~~~l~--~Lr~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~-~~~~~~~~G~p~~g~~~~~ 464 (737)
...+++ ++|.+++||+++++++.+++.+.+ +.++++.||+||++.+........... ..+. .++|.|++|++
T Consensus 296 ~~~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~-~~vG~~~~~~~--- 371 (546)
T PLN02330 296 EEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKK-NSVGFILPNLE--- 371 (546)
T ss_pred cccccchheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccccccccceecCCCcccccccccc-CccccccCCcE---
Confidence 222333 579999999999999999999998 789999999999975443321100000 1122 56777777777
Q ss_pred ceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhh
Q psy8076 465 VNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQR 543 (737)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~ 543 (737)
++ |+| ++++++|.|+.|||+|+|+ .++.||+++++.
T Consensus 372 --v~--------------------------------------i~d~~~~~~~p~g~~Gel~v~g~---~~~~gy~~~~~~ 408 (546)
T PLN02330 372 --VK--------------------------------------FIDPDTGRSLPKNTPGELCVRSQ---CVMQGYYNNKEE 408 (546)
T ss_pred --EE--------------------------------------EEeCCCCccCCCCCceEEEEecc---hhhhhhccCccc
Confidence 66 999 5789999999999999999 999999999988
Q ss_pred hHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEE
Q psy8076 544 FMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLY 623 (737)
Q Consensus 544 ~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v 623 (737)
+.+.+ +.+|||+|||+|++++||+++++||.||+||++|++|+|.|||++|.++|.|.+++|++++++..++.++++|
T Consensus 409 ~~~~~--~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v 486 (546)
T PLN02330 409 TDRTI--DEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACV 486 (546)
T ss_pred hhhhc--cCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEE
Confidence 87654 2478999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred EeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCC
Q psy8076 624 IKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTG 703 (737)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~ 703 (737)
++.+. . ....++|+++++++|+.++.|+.++++++
T Consensus 487 ~~~~~------------~---------------------------------~~~~~~l~~~~~~~l~~~~~p~~~~~v~~ 521 (546)
T PLN02330 487 VINPK------------A---------------------------------KESEEDILNFVAANVAHYKKVRVVQFVDS 521 (546)
T ss_pred EECCC------------C---------------------------------CCCHHHHHHHHHHhcccccCceEEEEecc
Confidence 88754 1 01246789999999999999999999999
Q ss_pred CCCCCCchhhHHHHHHHHcCC
Q psy8076 704 LPRTRSGKTARKSIVDMARNK 724 (737)
Q Consensus 704 lP~t~sGKi~R~~l~~~~~~~ 724 (737)
||+|++||++|++|++++...
T Consensus 522 iP~t~~GK~~r~~L~~~~~~~ 542 (546)
T PLN02330 522 IPKSLSGKIMRRLLKEKMLSI 542 (546)
T ss_pred CCCCCCcceeHHHHHHHHHhh
Confidence 999999999999999998653
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-64 Score=572.44 Aligned_cols=492 Identities=23% Similarity=0.283 Sum_probs=392.9
Q ss_pred hhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEec
Q psy8076 85 RHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVV 164 (737)
Q Consensus 85 ~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl 164 (737)
.+++++ |+++|+++.+ ....+||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 5 ~~a~~~-p~~~a~~~~~----~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l 79 (501)
T PRK13390 5 THAQIA-PDRPAVIVAE----TGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAI 79 (501)
T ss_pred hhhhhC-CCCcEEEecC----CCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEecc
Confidence 345566 9999998742 13789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHHHh
Q psy8076 165 FGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALA 244 (737)
Q Consensus 165 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~~ 244 (737)
++.++++++.+++++++++++++++... ........ .....+.+... ......+.+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~~~~----~~~~~~~~~~~--------~~~~~~~~~~~~ 138 (501)
T PRK13390 80 NHHLTAPEADYIVGDSGARVLVASAALD---------GLAAKVGA----DLPLRLSFGGE--------IDGFGSFEAALA 138 (501)
T ss_pred ccCCCHHHHHHHHHhcCCcEEEEcchhh---------hHHHHhhh----ccceEEEecCc--------ccccccHHHHhc
Confidence 9999999999999999999999976421 11111100 11111111110 001112333222
Q ss_pred hcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeec--cCchhHHHH---HHHHhhhhcCCCCcEEEEecc
Q psy8076 245 QRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILR--PVGGHIATL---AWTMSVIYNMGQDDVWWTASD 319 (737)
Q Consensus 245 ~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~--th~~~~~~~---~~~~~~~~~~~~~d~~l~~~~ 319 (737)
.... .....+++++++||||||| .||||++ +|.++.... .......+++..+|+++..+|
T Consensus 139 ~~~~---~~~~~~~~a~i~~TSGTTG------------~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 203 (501)
T PRK13390 139 GAGP---RLTEQPCGAVMLYSSGTTG------------FPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAP 203 (501)
T ss_pred ccCC---CCCCCcccEEEEeCCCCCC------------CCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEeccc
Confidence 1111 1112235799999999999 9999995 454433321 111234578899999999999
Q ss_pred cccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEE
Q psy8076 320 MGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYL 399 (737)
Q Consensus 320 ~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i 399 (737)
++|+.++.+ .+..+..|+++++.+. +++..+++.|+++++|++.++|+++..|.+...... ...+++++|.+
T Consensus 204 ~~h~~~~~~-~~~~~~~g~~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~~~l~~v 275 (501)
T PRK13390 204 IYHAAPLRW-CSMVHALGGTVVLAKR-----FDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVR--TRYDVSSLRAV 275 (501)
T ss_pred chhhhHHHH-HHHHHhcCceEEEcCC-----cCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhc--ccCChhhhheE
Confidence 999988655 3445678999988763 689999999999999999999999999886543211 33467899999
Q ss_pred EeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcccc
Q psy8076 400 FVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHC 479 (737)
Q Consensus 400 ~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~ 479 (737)
++||+++++++.+.+.+.++..+++.||+||+++++.... ......+ +++|+|+++ . ++
T Consensus 276 ~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~---~~~~~~~-~~~G~~~~g-~-----~~----------- 334 (501)
T PRK13390 276 IHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDS---PDWLAHP-GSVGRSVLG-D-----LH----------- 334 (501)
T ss_pred EEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecc---hhhccCC-CCcCCcccc-e-----EE-----------
Confidence 9999999999999999988999999999999986443221 1112233 678888887 6 66
Q ss_pred ccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecC
Q psy8076 480 VRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTM 559 (737)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TG 559 (737)
|+|++|+++++|+.|||+|+|+ +++.||+++++.+.+.+....+|||+||
T Consensus 335 ---------------------------i~d~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~t~~~~~~~~~~w~~tG 384 (501)
T PRK13390 335 ---------------------------ICDDDGNELPAGRIGTVYFERD---RLPFRYLNDPEKTAAAQHPAHPFWTTVG 384 (501)
T ss_pred ---------------------------EECCCCCCCCCCCceEEEEecC---CccccccCChhhhHHhhccCCCceEEcC
Confidence 9999999999999999999999 9999999999999888766557899999
Q ss_pred ceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccc
Q psy8076 560 DAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLI 639 (737)
Q Consensus 560 Dl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~ 639 (737)
|+|++|+||++++.||.||+||++|++|+|.|||++|.+||.|.+++|++++++..++.+++++++..+
T Consensus 385 Dl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~----------- 453 (501)
T PRK13390 385 DLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEG----------- 453 (501)
T ss_pred ceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCC-----------
Confidence 999999999999999999999999999999999999999999999999999998888999999988754
Q ss_pred cccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHH
Q psy8076 640 GFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIV 718 (737)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~ 718 (737)
. .......++|+++++++|+.|++|..++++++||+|++||++|++|+
T Consensus 454 -~------------------------------~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 454 -I------------------------------RGSDELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR 501 (501)
T ss_pred -C------------------------------CcchhhHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccceehhhcC
Confidence 1 11123467899999999999999999999999999999999999874
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-64 Score=570.27 Aligned_cols=506 Identities=23% Similarity=0.346 Sum_probs=420.5
Q ss_pred chhHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHH
Q psy8076 75 EINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLAT 154 (737)
Q Consensus 75 ~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~ 154 (737)
.+|+++++++++..+.+||++|++..+ ..+||.||+++++++|++|.+.|+++|++|+++++|+++++++++||
T Consensus 2 ~~~~~~~~~~~~~~~~~p~~~a~~~~~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~ 75 (508)
T TIGR02262 2 KYNAAEDLLDRNVVEGRGGKTAFIDDI------SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGA 75 (508)
T ss_pred cchHHHHHHHHHHhcccCCceEEEeCC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 468999999998544339999998865 89999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCC
Q psy8076 155 VRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPG 234 (737)
Q Consensus 155 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~ 234 (737)
+++|++++|+++.++.+++.++++.++++++++++.. ...+.+....++ ..+.++..... ..
T Consensus 76 ~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~--------~~ 137 (508)
T TIGR02262 76 IRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGEL---------LPVIKAALGKSP-HLEHRVVVGRP--------EA 137 (508)
T ss_pred HHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhh---------HHHHHHHHhcCC-CccEEEEeCCC--------Cc
Confidence 9999999999999999999999999999999998642 233344433344 44555544321 01
Q ss_pred CcccHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcE
Q psy8076 235 YDILWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDV 313 (737)
Q Consensus 235 ~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~ 313 (737)
....+.+....... .......++++++++||||||| .||||+++|+++...........++++.+|+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~ 205 (508)
T TIGR02262 138 GEVQLAELLATESEQFKPAATQADDPAFWLYSSGSTG------------MPKGVVHTHSNPYWTAELYARNTLGIREDDV 205 (508)
T ss_pred ccccHHHHhhcCCCccCCCCCCCCCcEEEEeCCCCCC------------CCcEEEEechhHHHHHHHHhHHhcCCCCCCE
Confidence 12233333332221 2223456789999999999999 9999999999877665543455678999999
Q ss_pred EEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCC
Q psy8076 314 WWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYST 393 (737)
Q Consensus 314 ~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l 393 (737)
++..+|++|++++...++.++..|+++++.+. ..++..+++.|+++++|++.++|+++..+...... .....
T Consensus 206 ~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~----~~~~~ 277 (508)
T TIGR02262 206 VFSAAKLFFAYGLGNALTFPMSVGATTVLMGE----RPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNL----PAEDQ 277 (508)
T ss_pred EEEcCchHHHHHHHHHHHHHHHcCceEEEeCC----CCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccc----ccccc
Confidence 99999999999887777888999999999874 35799999999999999999999999887764322 22345
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccc
Q psy8076 394 DSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWL 473 (737)
Q Consensus 394 ~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~ 473 (737)
.++|.+++||+++++++.+.|.+.+++++++.||+||++...+... ...... +++|+|++|+. ++
T Consensus 278 ~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~----~~~~~~-~~~G~~~~g~~-----v~----- 342 (508)
T TIGR02262 278 VRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNL----PGDVRY-GTSGKPVPGYR-----LR----- 342 (508)
T ss_pred ccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCC----ccCCCC-CCcCCCCCCcE-----EE-----
Confidence 7899999999999999999999999999999999999986554321 112233 67888888877 77
Q ss_pred cCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCC
Q psy8076 474 DGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFP 553 (737)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~ 553 (737)
|+|+++.++++|+.|||+|+|+ +++.||+++++.+.+.+ . +
T Consensus 343 ---------------------------------i~d~~~~~~~~g~~Gel~i~~~---~~~~gY~~~~~~~~~~~-~--~ 383 (508)
T TIGR02262 343 ---------------------------------LVGDGGQDVAAGEPGELLISGP---SSATMYWNNRAKTRDTF-Q--G 383 (508)
T ss_pred ---------------------------------EECCCCCCCCCCCeeEEEEecC---ccccccCCCHHHhHhhh-h--c
Confidence 9999999999999999999999 89999999999887765 2 6
Q ss_pred CeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcC
Q psy8076 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKM 633 (737)
Q Consensus 554 g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~ 633 (737)
|||+|||+++++++|.+++.||.||+||++|.+|++.+||+.|.++++|.++++++.++...++.++++++..+.
T Consensus 384 ~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~----- 458 (508)
T TIGR02262 384 EWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPG----- 458 (508)
T ss_pred CceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCC-----
Confidence 899999999999999999999999999999999999999999999999999999999887777888999987664
Q ss_pred CccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhh
Q psy8076 634 GFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTA 713 (737)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~ 713 (737)
.. ....+.++|+++++++|+.+++|..+++++++|+|++||++
T Consensus 459 -------~~------------------------------~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~ 501 (508)
T TIGR02262 459 -------QD------------------------------IDTALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQ 501 (508)
T ss_pred -------Cc------------------------------cccccHHHHHHHHHHhcccCCCCceEEEecCCCCCCCCcEe
Confidence 10 11234678999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy8076 714 RKSIVDM 720 (737)
Q Consensus 714 R~~l~~~ 720 (737)
|+.|+++
T Consensus 502 r~~l~~~ 508 (508)
T TIGR02262 502 RFKLREG 508 (508)
T ss_pred hhhccCC
Confidence 9998764
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-64 Score=578.67 Aligned_cols=527 Identities=17% Similarity=0.207 Sum_probs=418.5
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAA-IGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
+.++|++++... |+++|+++.+ .+.+.+||+||+++++++|++|.+ .|+++||+|+++++|+++++++++||+++
T Consensus 12 ~~~~l~~~a~~~-~~~~a~~~~~---~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~ 87 (576)
T PRK05620 12 LTRILEYGSTVH-GDTTVTTWGG---AEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACM 87 (576)
T ss_pred HHHHHHHHHHhC-CCceEEEEcC---CceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhc
Confidence 678899998877 9999999853 235899999999999999999986 79999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccc---cCCC
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAE---LTPG 234 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~---~~~~ 234 (737)
|++++|++|.++.+++.++++.++++++++++. +...+.+....++ ..+.++++......... ....
T Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~---------~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~ 157 (576)
T PRK05620 88 GAVFNPLNKQLMNDQIVHIINHAEDEVIVADPR---------LAEQLGEILKECP-CVRAVVFIGPSDADSAAAHMPEGI 157 (576)
T ss_pred CCEEeecccccCHHHHHHHHhccCCcEEEEChh---------hHHHHHHHHhhCc-cccEEEEecCcccccchhcccccc
Confidence 999999999999999999999999999999864 3344455555544 45555555432111100 0111
Q ss_pred CcccHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHH-HHhhhhcCCCCc
Q psy8076 235 YDILWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAW-TMSVIYNMGQDD 312 (737)
Q Consensus 235 ~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~-~~~~~~~~~~~d 312 (737)
....|.++...... .......++++++++||||||| .||||+++|+++...... .....+++..+|
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~ 225 (576)
T PRK05620 158 KVYSYEALLDGRSTVYDWPELDETTAAAICYSTGTTG------------APKGVVYSHRSLYLQSLSLRTTDSLAVTHGE 225 (576)
T ss_pred ccccHHHHhhcCCCcCCCCCCCccceeEEEECCCCCC------------CCceEEEEcHHHHHHHHHhhhhhhcCCCCCC
Confidence 23456666653322 2223456789999999999999 999999999886544332 122347788999
Q ss_pred EEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCC
Q psy8076 313 VWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYS 392 (737)
Q Consensus 313 ~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~ 392 (737)
++++.+|++|++++.. ++.++..|+++++... ..++..+++.|+++++|++..+|+++..+...... ...+
T Consensus 226 ~~l~~~pl~h~~g~~~-~~~~l~~g~~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~ 296 (576)
T PRK05620 226 SFLCCVPIYHVLSWGV-PLAAFMSGTPLVFPGP----DLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLK----NPPE 296 (576)
T ss_pred eEEEeCChHHhhhhHH-HHHHHhcCceEEecCC----CCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhc----cCcc
Confidence 9999999999998654 6888999999998753 35899999999999999999999999988765322 1223
Q ss_pred CCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCC---CCCCCccCCCcCCCCCCcceeee
Q psy8076 393 TDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDT---VPPKYSTGLPFPGYDGKYVNIVM 469 (737)
Q Consensus 393 l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~---~~~~~~~G~p~~g~~~~~~~~~~ 469 (737)
..+||.+++||+++++++.++|.+.++.++++.||+||++...+.......... .....++|++.++++ ++
T Consensus 297 ~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-----~~- 370 (576)
T PRK05620 297 RMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLE-----YR- 370 (576)
T ss_pred cCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCccccccccccccccCCcCCcee-----EE-
Confidence 458999999999999999999999899999999999999865543221000000 000134566666655 55
Q ss_pred eccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccC--CCcceEEEEecCCCCCcccccccChhhh---
Q psy8076 470 LNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECE--PHELGRIVVKLPLPPGTMSTLYKAPQRF--- 544 (737)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~--~g~~GEL~i~g~~~~~~~~gy~~~~~~~--- 544 (737)
|+|+ |..++ .+..|||+++|+ .++.|||++++.+
T Consensus 371 -------------------------------------i~~~-g~~~~~~~~~~Gel~v~g~---~~~~gY~~~~~~t~~~ 409 (576)
T PRK05620 371 -------------------------------------IVND-GQVMESTDRNEGEIQVRGN---WVTASYYHSPTEEGGG 409 (576)
T ss_pred -------------------------------------EecC-CccccCCCCCceEEEEEcC---cccccccCCccccccc
Confidence 9997 77764 478999999999 8999999998766
Q ss_pred -HHhhcc----------CCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCC
Q psy8076 545 -MKIYFT----------KFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613 (737)
Q Consensus 545 -~~~~~~----------~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~ 613 (737)
...|.. ..+|||+|||+++++.||+++|.||.||+||++|++|++.|||++|.+||.|.+++|++.+++
T Consensus 410 ~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~ 489 (576)
T PRK05620 410 AASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDD 489 (576)
T ss_pred cccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhcCCCceEEEEEeccCC
Confidence 222210 126899999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCce
Q psy8076 614 TKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIA 693 (737)
Q Consensus 614 ~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 693 (737)
..|+.+++++++.++ . .......++|+++++++|+.++
T Consensus 490 ~~g~~~~a~v~~~~~------------~------------------------------~~~~~~~~~l~~~l~~~L~~~~ 527 (576)
T PRK05620 490 KWGERPLAVTVLAPG------------I------------------------------EPTRETAERLRDQLRDRLPNWM 527 (576)
T ss_pred CcCceeEEEEEecCC------------C------------------------------CcccccHHHHHHHHHhhCcccc
Confidence 888899999988765 1 0112246789999999999999
Q ss_pred eeeeEEEcCCCCCCCCchhhHHHHHHHHcCCCCCch
Q psy8076 694 AFKLSTSVTGLPRTRSGKTARKSIVDMARNKPLRVR 729 (737)
Q Consensus 694 ~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~~~~~~~ 729 (737)
+|+.++++++||+|++||++|+.|++++.++++..+
T Consensus 528 ~P~~i~~v~~~P~t~~GKv~r~~L~~~~~~~~~~~~ 563 (576)
T PRK05620 528 LPEYWTFVDEIDKTSVGKFDKKDLRQHLADGDFEII 563 (576)
T ss_pred CCeEEEEeccCCCCCcccCcHHHHHHHHhcCCccEE
Confidence 999999999999999999999999999998776543
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-65 Score=587.73 Aligned_cols=546 Identities=16% Similarity=0.113 Sum_probs=401.7
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHH---cCCCCC-----------CEEEEEecC
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAA---IGVSAG-----------DRVLIYMPL 143 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~---~Gv~~G-----------d~V~i~~~~ 143 (737)
++.++|.++++++ |+++|+++.. ....++.+||+||.++++++|++|.+ +|+++| |+|+|+++|
T Consensus 62 ~l~~~l~~~~~~~-p~~~Al~~~~-~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N 139 (746)
T PTZ00342 62 HIMKLLLEKYKLN-NNKIAIVEHS-CGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSN 139 (746)
T ss_pred hHHHHHHHHHhhc-CCceeEeccC-CCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCC
Confidence 6889999999998 9999998642 12235899999999999999999997 499999 999999999
Q ss_pred CHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEec
Q psy8076 144 IPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQR 223 (737)
Q Consensus 144 ~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~ 223 (737)
++||++++|||+++|++.||+++.++.+++.++|+++++++++++.. +...+.+....++ .++++++++.
T Consensus 140 ~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~---------~~~~l~~~~~~~~-~l~~ii~~~~ 209 (746)
T PTZ00342 140 SINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLD---------LVEGLLERKNELP-HLKKLIILDT 209 (746)
T ss_pred CHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHH---------HHHHHHHhhccCC-CceEEEEECC
Confidence 99999999999999999999999999999999999999999999653 2333444444455 6777887754
Q ss_pred ccccc-----------------cccCC-------------------------------------------CCcccHHHHH
Q psy8076 224 RCVEE-----------------AELTP-------------------------------------------GYDILWDDAL 243 (737)
Q Consensus 224 ~~~~~-----------------~~~~~-------------------------------------------~~~~~~~~~~ 243 (737)
..... ..... .....+++..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 289 (746)
T PTZ00342 210 LIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMT 289 (746)
T ss_pred CCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHH
Confidence 21100 00000 0001122222
Q ss_pred hhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhh-hcCCCCcEEEEecccc
Q psy8076 244 AQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVI-YNMGQDDVWWTASDMG 321 (737)
Q Consensus 244 ~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~-~~~~~~d~~l~~~~~~ 321 (737)
..... ....+..++++|+|+||||||| .||||++||+|++.+........ ......|++++++|++
T Consensus 290 ~~~~~~~~~~~~~~dd~a~IiYTSGTTG------------~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~ 357 (746)
T PTZ00342 290 KNKTTNYKIQNEDPDFITSIVYTSGTSG------------KPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPIS 357 (746)
T ss_pred hhcccCCCCCCCCccceEEEEEcCCCCC------------CCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHH
Confidence 11111 1223457899999999999999 99999999999777654432211 1233568999999999
Q ss_pred cccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcC-------CCCcc-------
Q psy8076 322 WVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRED-------KDSTL------- 387 (737)
Q Consensus 322 ~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~-------~~~~~------- 387 (737)
|++++.. .+.+++.|+++++++ .++..+++.|+++++|+++++|.++..|.... .....
T Consensus 358 Hi~~~~~-~~~~l~~G~~i~~~~------~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~ 430 (746)
T PTZ00342 358 HIYERVI-AYLSFMLGGTINIWS------KDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKIL 430 (746)
T ss_pred HHHHHHH-HHHHHHcCCEEEEeC------CCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 9999765 677899999999875 36889999999999999999999999886521 00000
Q ss_pred --------c----------------cCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCC
Q psy8076 388 --------G----------------AQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQ 443 (737)
Q Consensus 388 --------~----------------~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~ 443 (737)
. ...-.++||.+++||+++++++.++|...+|+++++.||+||+++..+....
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~~~~--- 507 (746)
T PTZ00342 431 SLRKSNNNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHA--- 507 (746)
T ss_pred HHHHHhhcCCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeeeccC---
Confidence 0 0001268999999999999999999999899999999999999876654321
Q ss_pred CCCCCCCCccCCCc-CCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCcce
Q psy8076 444 HDTVPPKYSTGLPF-PGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELG 521 (737)
Q Consensus 444 ~~~~~~~~~~G~p~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~G 521 (737)
....+ +++|+|+ |+++ ++ |+| +++...+.+..|
T Consensus 508 -~~~~~-gsvG~p~~pg~e-----~k--------------------------------------i~d~~~~~~~~~~~~G 542 (746)
T PTZ00342 508 -DDNNT-ESIGGPISPNTK-----YK--------------------------------------VRTWETYKATDTLPKG 542 (746)
T ss_pred -CCCCc-ccccCcCCCcEE-----EE--------------------------------------EecccccccCCCCCce
Confidence 22344 7889997 8887 77 887 444444455679
Q ss_pred EEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEee-CcEEechHHHHHHHhcCC
Q psy8076 522 RIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINV-AGHRLSTSALEDVVLSHP 600 (737)
Q Consensus 522 EL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~-~G~rv~~~eIE~~l~~~p 600 (737)
||+|+|| +++.|||++++.|.+.|. .+|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.+||++|.+||
T Consensus 543 El~vrGp---~v~~GY~~~pe~T~~~f~--~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p 617 (746)
T PTZ00342 543 ELLIKSD---SIFSGYFLEKEQTKNAFT--EDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQIS 617 (746)
T ss_pred EEEEecC---cccccccCChhhhhhhcC--cCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCC
Confidence 9999999 999999999999998874 3899999999999999999999999999996 599999999999999999
Q ss_pred CcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHH-
Q psy8076 601 DVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGK- 679 (737)
Q Consensus 601 ~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 679 (737)
.|.+|+|+|... ...++|+|+++...+.++........ ...+. ...-+..............+
T Consensus 618 ~V~~~~VvG~~~---~~~~~Alvv~d~~~~~~~a~~~~~~~------~~~i~-------~~~~~~~~~~~~~~~~~~~~~ 681 (746)
T PTZ00342 618 FINFCVVYGDDS---MDGPLAIISVDKYLLFKCLKDDNMLE------STGIN-------EKNYLEKLTDETINNNIYVDY 681 (746)
T ss_pred CccEEEEEccCC---ccccEEEEECCHHHHHHHHHhcCCcc------ccccC-------cccHHHHhhhhhhccHHHHHH
Confidence 999999999632 23699999988754333221110000 00000 00000000000011122233
Q ss_pred ---HHHHHHHH-hcCCceeeeeEEEcC-CC----CCCCCchhhHHHHHHHHcC
Q psy8076 680 ---ELKELVRE-AIGPIAAFKLSTSVT-GL----PRTRSGKTARKSIVDMARN 723 (737)
Q Consensus 680 ---~l~~~l~~-~l~~~~~p~~~~~v~-~l----P~t~sGKi~R~~l~~~~~~ 723 (737)
++.+..++ .|..+..++.|.+++ ++ -+||+-|+.|+.+.+.|..
T Consensus 682 v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~ 734 (746)
T PTZ00342 682 VKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAF 734 (746)
T ss_pred HHHHHHHHHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHHH
Confidence 33333232 699999999998875 33 2899999999999998763
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-64 Score=575.39 Aligned_cols=512 Identities=19% Similarity=0.263 Sum_probs=417.7
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++++++ ||++|+++.+ .+.+||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++
T Consensus 24 ~l~~~~~~~~~~~-pd~~a~~~~~-----~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~ 97 (547)
T PRK06087 24 SLADYWQQTARAM-PDKIAVVDNH-----GASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKV 97 (547)
T ss_pred CHHHHHHHHHHHC-CCceEEEcCC-----CCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 3678899999888 9999998753 268999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|++|.++.+++.+++++++++++++++.... ......+.......+ ..++++.+.... .....+
T Consensus 98 G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~ 166 (547)
T PRK06087 98 GAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQ----TRPVDLILPLQNQLP-QLQQIVGVDKLA------PATSSL 166 (547)
T ss_pred CcEEeccchhcCHHHHHHHHHhcCCeEEEEeccccc----ccHHHHHHHHHhhCC-CCcEEEEeCCcC------CCcCcc
Confidence 999999999999999999999999999999764311 122333444444443 445566554321 011123
Q ss_pred cHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEE
Q psy8076 238 LWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWT 316 (737)
Q Consensus 238 ~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~ 316 (737)
.+.++...... .......++++++|+||||||| .||+|+++|++++.... .+...+++.++|++++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PK~v~~t~~~l~~~~~-~~~~~~~~~~~d~~l~ 233 (547)
T PRK06087 167 SLSQIIADYEPLTTAITTHGDELAAVLFTSGTEG------------LPKGVMLTHNNILASER-AYCARLNLTWQDVFMM 233 (547)
T ss_pred CHHHHhccCCcccCCCCCCCCCeEEEEeCCCCCC------------CCcEEEEecHHHHHHHH-HHHHhcCCCCCCeEEE
Confidence 44444433222 1122356789999999999999 99999999988665544 3455678899999999
Q ss_pred ecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCc
Q psy8076 317 ASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSL 396 (737)
Q Consensus 317 ~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~L 396 (737)
.+|++|.+++...++.++..|+++++.+. .++..+++.|+++++|+++.+|..+..+++.... ...++++|
T Consensus 234 ~~pl~h~~g~~~~~~~~l~~g~~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~----~~~~~~~l 304 (547)
T PRK06087 234 PAPLGHATGFLHGVTAPFLIGARSVLLDI-----FTPDACLALLEQQRCTCMLGATPFIYDLLNLLEK----QPADLSAL 304 (547)
T ss_pred ecchHHHHHHHHHHHHHHhcCCEEEecCC-----CCHHHHHHHHHHcCCCEEeccHHHHHHHHhcccc----CCCCCCCe
Confidence 99999999987778899999999999763 6899999999999999999877776666654332 34567899
Q ss_pred cEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCc
Q psy8076 397 RYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGR 476 (737)
Q Consensus 397 r~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~ 476 (737)
|.+++||+++++++.+.+.+. ++++++.||+||++........ ....... .++|.|++++. ++
T Consensus 305 r~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~--~~~~~~~-~~~G~~~~~~~-----~~-------- 367 (547)
T PRK06087 305 RFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLD--DPLSRFM-HTDGYAAAGVE-----IK-------- 367 (547)
T ss_pred EEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCC--cchhhcC-CcCCccCCCce-----EE--------
Confidence 999999999999999987764 8999999999999865543211 1111222 56788888877 76
Q ss_pred cccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCee
Q psy8076 477 AHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYY 556 (737)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~ 556 (737)
|+|+++++++.|+.|||+++|+ +++.||+++++.+...+.. +|||
T Consensus 368 ------------------------------i~d~~~~~~~~g~~Gel~v~g~---~~~~gy~~~~~~~~~~~~~--~g~~ 412 (547)
T PRK06087 368 ------------------------------VVDEARKTLPPGCEGEEASRGP---NVFMGYLDEPELTARALDE--EGWY 412 (547)
T ss_pred ------------------------------EEcCCCCCCcCCCcceEEEecc---cccccccCCHHHHHHHhCC--CCCc
Confidence 9999999999999999999999 9999999999988776533 6899
Q ss_pred ecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCcc
Q psy8076 557 DTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFS 636 (737)
Q Consensus 557 ~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~ 636 (737)
+|||+++++++|+++++||.||+|+++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++..+..
T Consensus 413 ~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~------- 485 (547)
T PRK06087 413 YSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPH------- 485 (547)
T ss_pred CcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCC-------
Confidence 9999999999999999999999999999999999999999999999999999999888889999999986530
Q ss_pred ccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHH-HhcCCceeeeeEEEcCCCCCCCCchhhHH
Q psy8076 637 GLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVR-EAIGPIAAFKLSTSVTGLPRTRSGKTARK 715 (737)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~l~~~~~p~~~~~v~~lP~t~sGKi~R~ 715 (737)
. ....+++.+++. +.++.+++|..|.++++||+|.+||++|+
T Consensus 486 ----~---------------------------------~~~~~~~~~~~~~~~l~~~~~P~~i~~v~~iP~t~sGK~~r~ 528 (547)
T PRK06087 486 ----H---------------------------------SLTLEEVVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKF 528 (547)
T ss_pred ----C---------------------------------CCCHHHHHHHHHhccccccCCCeEEEEeccCCCCCCCcCcHH
Confidence 0 012356777664 68999999999999999999999999999
Q ss_pred HHHHHHcCC
Q psy8076 716 SIVDMARNK 724 (737)
Q Consensus 716 ~l~~~~~~~ 724 (737)
.|++.+.++
T Consensus 529 ~l~~~~~~~ 537 (547)
T PRK06087 529 LLRKDIMRR 537 (547)
T ss_pred HHHHHHHHH
Confidence 999988764
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-64 Score=570.23 Aligned_cols=496 Identities=23% Similarity=0.300 Sum_probs=410.0
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
.+.+++..++ .+ |+++|+...+ .+.+||+||.++++++|++|.++|+++||+|+++++|+++++++++||+++
T Consensus 4 ~l~~~~~~~~-~~-~~~~a~~~~~-----~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~ 76 (504)
T PRK07514 4 NLFDALRAAF-AD-RDAPFIETPD-----GLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRA 76 (504)
T ss_pred cHHHHHHHHh-hC-CCCeEEEeCC-----CCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 4677887777 66 9999998743 379999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|+++.++.+++..+++.++++++++++... ..+....... ....++.+... ...
T Consensus 77 G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~--~~~~~~~~~~~----------~~~ 135 (504)
T PRK07514 77 GAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANF---------AWLSKIAAAA--GAPHVETLDAD----------GTG 135 (504)
T ss_pred CcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchh---------HHHHHhhhcc--CCceEEEecCC----------Ccc
Confidence 99999999999999999999999999999986532 1122111111 12223333221 011
Q ss_pred cHHHHHhhcC-CCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEE
Q psy8076 238 LWDDALAQRL-SHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWT 316 (737)
Q Consensus 238 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~ 316 (737)
.+.+...... ........++++++++||||||| .||+|+++|++++.... .....+++.++|++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG------------~PK~v~~s~~~l~~~~~-~~~~~~~~~~~d~~l~ 202 (504)
T PRK07514 136 SLLEAAAAAPDDFETVPRGADDLAAILYTSGTTG------------RSKGAMLSHGNLLSNAL-TLVDYWRFTPDDVLIH 202 (504)
T ss_pred cHHHhhhhcCcccCcccCCCCCeEEEEECCCCCC------------CCcEEEEecHHHHHHHH-HHHHHhCCCCccEEEE
Confidence 1122111111 12233456799999999999999 99999999988665544 4556688999999999
Q ss_pred ecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCc
Q psy8076 317 ASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSL 396 (737)
Q Consensus 317 ~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~L 396 (737)
..|++|..++...++.++..|+++++.+. .++..+++.+ +++|++.++|+++..+...... ....++++
T Consensus 203 ~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-----~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~----~~~~~~~l 271 (504)
T PRK07514 203 ALPIFHTHGLFVATNVALLAGASMIFLPK-----FDPDAVLALM--PRATVMMGVPTFYTRLLQEPRL----TREAAAHM 271 (504)
T ss_pred ecchHHHHHHHHHHHHHHhcCcEEEECCC-----CCHHHHHHHH--HhheeeecHHHHHHHHHcCCCC----Ccccccce
Confidence 99999999987778899999999999863 6799999999 4799999999999988765432 34467899
Q ss_pred cEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCc
Q psy8076 397 RYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGR 476 (737)
Q Consensus 397 r~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~ 476 (737)
|.+++||+++++++.++|.+.++.++++.||+||++...+.. . ...... .++|.|++++. ++
T Consensus 272 r~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~-~---~~~~~~-~~~G~~~~~~~-----v~-------- 333 (504)
T PRK07514 272 RLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNP-Y---DGERRA-GTVGFPLPGVS-----LR-------- 333 (504)
T ss_pred eeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCC-c---cccccC-cccccCCCCcE-----EE--------
Confidence 999999999999999999999999999999999998544321 1 122233 67888888887 77
Q ss_pred cccccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCe
Q psy8076 477 AHCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGY 555 (737)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~ 555 (737)
|+| +++++++.|+.|||+|+|+ +++.||+++++.+.+.|. .+||
T Consensus 334 ------------------------------i~d~~~~~~~~~g~~Gel~i~~~---~~~~gy~~~~~~~~~~~~--~~~~ 378 (504)
T PRK07514 334 ------------------------------VTDPETGAELPPGEIGMIEVKGP---NVFKGYWRMPEKTAEEFR--ADGF 378 (504)
T ss_pred ------------------------------EEECCCCCCCCCCCceEEEEecC---CccccccCCchhhhhhcc--cCCC
Confidence 999 8899999999999999999 999999999998877663 3789
Q ss_pred eecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCc
Q psy8076 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGF 635 (737)
Q Consensus 556 ~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~ 635 (737)
|+|||+++++++|+++++||.||+||++|++|+|.|||+++.++++|.+++|++++++..++.++++++..+.
T Consensus 379 ~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~------- 451 (504)
T PRK07514 379 FITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPG------- 451 (504)
T ss_pred eeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCC-------
Confidence 9999999999999999999999999999999999999999999999999999999988778889999988654
Q ss_pred cccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHH
Q psy8076 636 SGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARK 715 (737)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~ 715 (737)
. ....+++++.++++|+.+++|..+++++++|+|++||++|+
T Consensus 452 -----~---------------------------------~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gK~~r~ 493 (504)
T PRK07514 452 -----A---------------------------------ALDEAAILAALKGRLARFKQPKRVFFVDELPRNTMGKVQKN 493 (504)
T ss_pred -----C---------------------------------CCCHHHHHHHHHhhcccCCCCcEEEEeccCCCCCCcceeHH
Confidence 1 01246788999999999999999999999999999999999
Q ss_pred HHHHHHcC
Q psy8076 716 SIVDMARN 723 (737)
Q Consensus 716 ~l~~~~~~ 723 (737)
+|++++.+
T Consensus 494 ~l~~~~~~ 501 (504)
T PRK07514 494 LLREQYAD 501 (504)
T ss_pred HHHHHHHh
Confidence 99998754
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-64 Score=570.00 Aligned_cols=503 Identities=24% Similarity=0.312 Sum_probs=413.4
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcC
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 158 (737)
+.++|+.+++++ |+++|+.+.+ +.+||+||++++.++|+.|.+.|+++|++|+++++|+.++++++|||+++|
T Consensus 2 ~~~~~~~~~~~~-p~~~a~~~~~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G 74 (515)
T TIGR03098 2 LHHLLEDAAARL-PDATALVHHD------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAG 74 (515)
T ss_pred HHHHHHHHHHHC-CCCeEEEECC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Confidence 567888888888 9999999876 799999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCccc
Q psy8076 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL 238 (737)
Q Consensus 159 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~ 238 (737)
++++|+++.++.+++..+++.+++++++++.... ..+......++ ....++.+..... ..........
T Consensus 75 ~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~ 142 (515)
T TIGR03098 75 GVFVPINPLLKAEQVAHILADCNVRLLVTSSERL---------DLLHPALPGCH-DLRTLILVGEPAH--ASEGGGESPS 142 (515)
T ss_pred EEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchh---------hhhHhhhhccc-ccceEEEecCccc--ccCCcccccc
Confidence 9999999999999999999999999999976421 22222222222 3444554443211 0111112345
Q ss_pred HHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEec
Q psy8076 239 WDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTAS 318 (737)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~ 318 (737)
|.++..........+...+++++++||||||| .||||+++|++++..... ....+++..+|++++..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG------------~PK~v~~t~~~l~~~~~~-~~~~~~~~~~d~~l~~~ 209 (515)
T TIGR03098 143 WPKLLALGDADPPHPVIDSDMAAILYTSGSTG------------RPKGVVLSHRNLVAGAQS-VATYLENRPDDRLLAVL 209 (515)
T ss_pred HHHhhccccccccCCCCcCCeEEEEECCCCCC------------CCceEEEecHHHHHHHHH-HHHHhCCCcccEEEEEC
Confidence 55554433222223345688999999999999 999999999887655544 44567889999999999
Q ss_pred ccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccE
Q psy8076 319 DMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRY 398 (737)
Q Consensus 319 ~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~ 398 (737)
|++|+.++. .++.++..|+++++.+. .++..+++.++++++|++.++|+++..|.+... ...+++++|.
T Consensus 210 p~~~~~~~~-~~~~~l~~G~~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----~~~~~~~l~~ 278 (515)
T TIGR03098 210 PLSFDYGFN-QLTTAFYVGATVVLHDY-----LLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-----PESAAPSLRY 278 (515)
T ss_pred chhhHhHHH-HHHHHHHcCCEEEEcCC-----CCHHHHHHHHHHcCCceEecChHHHHHHHhccc-----CCCCccceEE
Confidence 999999865 47899999999998763 689999999999999999999999999977532 2235789999
Q ss_pred EEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcc
Q psy8076 399 LFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRA 477 (737)
Q Consensus 399 i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~ 477 (737)
+++||+++++++.+.+.+.+ +..+++.||+||++....... .....++ +++|+|++++. ++
T Consensus 279 ~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~---~~~~~~~-~~vG~~~~~~~-----~~--------- 340 (515)
T TIGR03098 279 LTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPP---EEVDRRP-DSIGKAIPNAE-----VL--------- 340 (515)
T ss_pred EEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEeccc---ccccCCC-CCcceecCCCE-----EE---------
Confidence 99999999999999999988 578999999999975433211 1122334 67888888887 77
Q ss_pred ccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccC------
Q psy8076 478 HCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTK------ 551 (737)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~------ 551 (737)
|+|++|++++.|+.|||+++|+ .++.|||++++.+.+.|...
T Consensus 341 -----------------------------i~~~~~~~~~~~~~Gel~v~g~---~~~~gy~~~~~~~~~~~~~~~~~~~~ 388 (515)
T TIGR03098 341 -----------------------------VLREDGSECAPGEEGELVHRGA---LVAMGYWNDPEKTAERFRPLPPRPGE 388 (515)
T ss_pred -----------------------------EECCCCCCCCCCCceEEEEcCc---hhhccccCCchhhhhhhhccCCcccc
Confidence 9999999999999999999999 89999999998776654321
Q ss_pred ---CCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecC
Q psy8076 552 ---FPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRI 628 (737)
Q Consensus 552 ---~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~ 628 (737)
.++||+|||+|+++.||++++.||.||+||++|++|+|.|||++|.+||.|.+++|++++++..++.++++++....
T Consensus 389 ~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~ 468 (515)
T TIGR03098 389 LHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGG 468 (515)
T ss_pred ccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCC
Confidence 13489999999999999999999999999999999999999999999999999999999998889999999886543
Q ss_pred CCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCC
Q psy8076 629 PLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTR 708 (737)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~ 708 (737)
. ....++++++++++|+++++|..++++++||+|+
T Consensus 469 ------------~---------------------------------~~~~~~l~~~l~~~l~~~~~p~~i~~v~~iP~t~ 503 (515)
T TIGR03098 469 ------------E---------------------------------ELDRAALLAECRARLPNYMVPALIHVRQALPRNA 503 (515)
T ss_pred ------------C---------------------------------CCCHHHHHHHHHhhCccccCCCEEEEeccCCCCC
Confidence 1 0124679999999999999999999999999999
Q ss_pred CchhhHHHHHH
Q psy8076 709 SGKTARKSIVD 719 (737)
Q Consensus 709 sGKi~R~~l~~ 719 (737)
+||++|++|++
T Consensus 504 ~GK~~r~~L~~ 514 (515)
T TIGR03098 504 NGKIDRKALAA 514 (515)
T ss_pred CCCCcHHHhcc
Confidence 99999999864
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-64 Score=571.22 Aligned_cols=518 Identities=20% Similarity=0.268 Sum_probs=413.7
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++++++ ||+++++... .+..+++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++
T Consensus 11 ~~~~~~~~~a~~~-~~~~~~~~~~--~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~ 87 (542)
T PRK06018 11 LCHRIIDHAARIH-GNREVVTRSV--EGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGI 87 (542)
T ss_pred CHHHHHHHHHHhC-CCceEEEeec--cCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhc
Confidence 4778999999988 9999998532 233578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|++|.++.+++..+++.+++++++++.. +...+.+.....+ .++.++++..... ..........
T Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~ 156 (542)
T PRK06018 88 GAICHTVNPRLFPEQIAWIINHAEDRVVITDLT---------FVPILEKIADKLP-SVERYVVLTDAAH-MPQTTLKNAV 156 (542)
T ss_pred CeEeeccccccCHHHHHHHHhccCCCEEEEccc---------cHHHHHHHHhhCC-CccEEEEeccccc-ccccCccccc
Confidence 999999999999999999999999999999865 3344444444444 4555555443211 0000111223
Q ss_pred cHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhH-HHHHHHHhhhhcCCCCcEEE
Q psy8076 238 LWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHI-ATLAWTMSVIYNMGQDDVWW 315 (737)
Q Consensus 238 ~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~-~~~~~~~~~~~~~~~~d~~l 315 (737)
.+.+....... .......++++++++||||||| .||||+++|++.+ ..........++++.+|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG------------~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~ 224 (542)
T PRK06018 157 AYEEWIAEADGDFAWKTFDENTAAGMCYTSGTTG------------DPKGVLYSHRSNVLHALMANNGDALGTSAADTML 224 (542)
T ss_pred cHHHHhccCCcccCcccCCccceeeEEecCCCCC------------CCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEE
Confidence 45555443322 2223456788999999999999 9999999998643 22323344567889999999
Q ss_pred EecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCC
Q psy8076 316 TASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395 (737)
Q Consensus 316 ~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~ 395 (737)
...|++|..++.. .+.++..|+++++... ..++..+++.++++++|++.++|++++.|.+.... ...++++
T Consensus 225 ~~~p~~h~~~~~~-~~~~~~~g~~~v~~~~----~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~----~~~~~~~ 295 (542)
T PRK06018 225 PVVPLFHANSWGI-AFSAPSMGTKLVMPGA----KLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEK----EGLKLPH 295 (542)
T ss_pred EecCHHHHhhhHH-HHhhhhcCceEEccCc----CCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccc----cCCCccc
Confidence 9999999888654 5678899999988543 36789999999999999999999999999876533 3346789
Q ss_pred ccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCC--C-----CCCCCccCCCcCCCCCCcceee
Q psy8076 396 LRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHD--T-----VPPKYSTGLPFPGYDGKYVNIV 468 (737)
Q Consensus 396 Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~--~-----~~~~~~~G~p~~g~~~~~~~~~ 468 (737)
||.+++||+++++++.++|++ ++.++++.||+||++.+.+......... . ... .++|+|.+|++ ++
T Consensus 296 lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~~~g~~-----i~ 368 (542)
T PRK06018 296 LKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVL-QKQGYPPFGVE-----MK 368 (542)
T ss_pred ceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCccccccCCchhhhhcc-ccCCCCCCCcE-----EE
Confidence 999999999999999999999 8999999999999987655432110000 0 001 34555555555 44
Q ss_pred eeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCC--cceEEEEecCCCCCcccccccChhhhHH
Q psy8076 469 MLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPH--ELGRIVVKLPLPPGTMSTLYKAPQRFMK 546 (737)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g--~~GEL~i~g~~~~~~~~gy~~~~~~~~~ 546 (737)
|+|++|++++.+ ..|||+++|+ +++.|||++...
T Consensus 369 --------------------------------------v~d~~~~~~~~~~~~~Gel~i~g~---~~~~gy~~~~~~--- 404 (542)
T PRK06018 369 --------------------------------------ITDDAGKELPWDGKTFGRLKVRGP---AVAAAYYRVDGE--- 404 (542)
T ss_pred --------------------------------------EECCCCCCCCCCCCceeEEEEecC---CcchhhhcCccc---
Confidence 999999988863 6899999999 999999994321
Q ss_pred hhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEee
Q psy8076 547 IYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKK 626 (737)
Q Consensus 547 ~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~ 626 (737)
..+.+|||+|||+++++++|++++.||.||+||++|++|++.|||+++.+||+|.+++|++.+++..++.+.++|++.
T Consensus 405 --~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 482 (542)
T PRK06018 405 --ILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLK 482 (542)
T ss_pred --EecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeC
Confidence 123478999999999999999999999999999999999999999999999999999999999988888899999887
Q ss_pred cCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCC
Q psy8076 627 RIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPR 706 (737)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~ 706 (737)
++ . ....++++++++++++.+++|..++++++||+
T Consensus 483 ~~------------~---------------------------------~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~ 517 (542)
T PRK06018 483 PG------------E---------------------------------TATREEILKYMDGKIAKWWMPDDVAFVDAIPH 517 (542)
T ss_pred CC------------C---------------------------------CCCHHHHHHHHHhhCccccCCcEEEEeccCCC
Confidence 65 1 11245789999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHcCCCCCc
Q psy8076 707 TRSGKTARKSIVDMARNKPLRV 728 (737)
Q Consensus 707 t~sGKi~R~~l~~~~~~~~~~~ 728 (737)
|++||++|++|++++.+-++..
T Consensus 518 t~~GKi~r~~L~~~~~~~~~~~ 539 (542)
T PRK06018 518 TATGKILKTALREQFKDYKLPT 539 (542)
T ss_pred CCcchhhHHHHHHHHhccCCCC
Confidence 9999999999999998755443
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=591.00 Aligned_cols=546 Identities=18% Similarity=0.210 Sum_probs=402.0
Q ss_pred hhHHHHHHhhhhhccCCCceEEEEe-----------CC------CCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEE
Q psy8076 76 INACYNAIDRHVERGMAKKVALIHD-----------SP------VTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVL 138 (737)
Q Consensus 76 ~n~~~~~l~~~~~~~~pd~~Al~~~-----------~~------~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~ 138 (737)
.+++.++|+++++++ ||++|+.+. +. ..+.+..+||+||+++++++|++|.++|+++||+|+
T Consensus 57 ~~t~~~l~~~~~~~~-pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Va 135 (696)
T PLN02387 57 ATTLAALFEQSCKKY-SDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVA 135 (696)
T ss_pred CCCHHHHHHHHHHHC-CCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence 346789999999998 999999542 10 113456799999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeE
Q psy8076 139 IYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYC 218 (737)
Q Consensus 139 i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 218 (737)
|+++|++||++++|||+++|+++||+++.++.+++.++|++++++++|++... ...+......++ .++++
T Consensus 136 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~---------~~~l~~~~~~~~-~l~~i 205 (696)
T PLN02387 136 IFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQ---------LKKLIDISSQLE-TVKRV 205 (696)
T ss_pred EEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHH---------HHHHHHHhhccC-CceEE
Confidence 99999999999999999999999999999999999999999999999997542 233333334444 56777
Q ss_pred EEEecccccccc----cCCCCcccHHHHHhhcCC--CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCc
Q psy8076 219 IIFQRRCVEEAE----LTPGYDILWDDALAQRLS--HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVG 292 (737)
Q Consensus 219 iv~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~ 292 (737)
++++........ ........|.++...... .......++|+++|+||||||| .||||+++|+
T Consensus 206 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG------------~PKGV~lth~ 273 (696)
T PLN02387 206 IYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTG------------LPKGVMMTHG 273 (696)
T ss_pred EEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCC------------CCCEEEEEcH
Confidence 777543111000 000112345555443222 1223356899999999999999 9999999999
Q ss_pred hhHHHHHHHHhhhhcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCC-C--CChhHHHHHHHhcCCcEEe
Q psy8076 293 GHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDR-T--PDPSQYYRVIHNHKVNGLF 369 (737)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~-~--~~~~~~~~~i~~~~vt~l~ 369 (737)
+++.+.........+++++|++++++|++|++++.. .+..+..|+++.+....... . .-+..++..++++++|++.
T Consensus 274 ~l~~~~~~~~~~~~~~~~~d~~l~~lPl~Hi~~~~~-~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~ 352 (696)
T PLN02387 274 NIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELAA-ESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMT 352 (696)
T ss_pred HHHHHHHHHHhhcCCCCCCCEEEEECcHHHHHHHHH-HHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEE
Confidence 987766654433346889999999999999998655 34456677766653221100 0 0123467789999999999
Q ss_pred ecHHHHHHHHHcCCCCcc-----------------------------ccC-------------CCC-CCccEEEeecCCC
Q psy8076 370 TAPTALRVIRREDKDSTL-----------------------------GAQ-------------YST-DSLRYLFVAGEHC 406 (737)
Q Consensus 370 ~~P~~~~~l~~~~~~~~~-----------------------------~~~-------------~~l-~~Lr~i~~gGe~l 406 (737)
++|.+++.+.+....... ... ..+ +++|.+++||+++
T Consensus 353 ~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl 432 (696)
T PLN02387 353 AVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPL 432 (696)
T ss_pred ehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCC
Confidence 999999988653210000 000 001 5899999999999
Q ss_pred CHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccc
Q psy8076 407 DHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPES 486 (737)
Q Consensus 407 ~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (737)
++++.+++...+|+++++.||+||+++.++.... ..... +++|+|+|+++ ++
T Consensus 433 ~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~----~~~~~-gsvG~p~p~~e-----vk------------------ 484 (696)
T PLN02387 433 SGDTQRFINICLGAPIGQGYGLTETCAGATFSEW----DDTSV-GRVGPPLPCCY-----VK------------------ 484 (696)
T ss_pred CHHHHHHHHHHcCCCeeEeechhhcccceeecCc----ccCCC-CccCCCCCceE-----EE------------------
Confidence 9999988888889999999999999876654322 12233 78899988888 77
Q ss_pred cccCCCCCCCCcccccceEEEEc-CCCCcc---CCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCC--eeecCc
Q psy8076 487 LRKNVPKGQNATHFTSVEVRIIR-NDGSEC---EPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPG--YYDTMD 560 (737)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~---~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g--~~~TGD 560 (737)
|+| +++... .++..|||+|+|| +++.|||++++.|.+.|..+.+| ||+|||
T Consensus 485 --------------------ivd~~~~~~~~~~~~~p~GEi~vrGp---~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGD 541 (696)
T PLN02387 485 --------------------LVSWEEGGYLISDKPMPRGEIVIGGP---SVTLGYFKNQEKTDEVYKVDERGMRWFYTGD 541 (696)
T ss_pred --------------------EeeccccCcccCCCCCCCceEEeccC---cccchhcCCHHHHhhhhccccCCCceeecCc
Confidence 888 544322 2345699999999 99999999999999987544345 999999
Q ss_pred eEEEecCceEEEEeecCCeEeeC-cEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccc
Q psy8076 561 AGYYDENGYIYVTARDDDVINVA-GHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLI 639 (737)
Q Consensus 561 l~~~~~dG~l~i~GR~dd~Ik~~-G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~ 639 (737)
+|++|+||+|+|+||+||+||++ |++|+|.|||++|.+||.|.+++|++.+. ...++|+|++..+.+.++......
T Consensus 542 ig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~~a~vv~~~~~~~~~~~~~~~ 618 (696)
T PLN02387 542 IGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPF---HSYCVALVVPSQQALEKWAKKAGI 618 (696)
T ss_pred eEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCC---cceEEEEEEeCHHHHHHHHHHcCC
Confidence 99999999999999999999985 99999999999999999999999998753 236889999877533322111100
Q ss_pred cccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHH-----HhcCCceeeeeEEEcCCCC------CCC
Q psy8076 640 GFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVR-----EAIGPIAAFKLSTSVTGLP------RTR 708 (737)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-----~~l~~~~~p~~~~~v~~lP------~t~ 708 (737)
.. ......| ...+..+++.+.+. .+|..+.+|+.|.++++-. +|+
T Consensus 619 ~~----------------------~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~ 674 (696)
T PLN02387 619 DY----------------------SNFAELC--EKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTA 674 (696)
T ss_pred CC----------------------CCHHHHh--cCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCCh
Confidence 00 0000001 12233444444443 3699999999999987643 688
Q ss_pred CchhhHHHHHHHHcC
Q psy8076 709 SGKTARKSIVDMARN 723 (737)
Q Consensus 709 sGKi~R~~l~~~~~~ 723 (737)
+.|+.|+.+++.|.+
T Consensus 675 t~K~~R~~i~~~y~~ 689 (696)
T PLN02387 675 ALKLKREQIRKKFKD 689 (696)
T ss_pred hhhhhhHHHHHHHHH
Confidence 889999999999865
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-64 Score=574.34 Aligned_cols=506 Identities=21% Similarity=0.303 Sum_probs=406.1
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEecCCHHHHHHHHHHHH
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAI-GVSAGDRVLIYMPLIPEAIVSMLATVR 156 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~-Gv~~Gd~V~i~~~~~~e~vva~lA~~~ 156 (737)
.+.++|++++++. |+++|+++.+ +.+||.||+++++++|++|.+. |+++||+|+++++|++++++++|||++
T Consensus 25 ~~~~~l~~~~~~~-p~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~ 97 (562)
T PRK12492 25 SVVEVFERSCKKF-ADRPAFSNLG------VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALR 97 (562)
T ss_pred cHHHHHHHHHHhC-CCCeeEecCC------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 4678899999887 9999998765 7999999999999999999985 999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEe--------------
Q psy8076 157 LGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQ-------------- 222 (737)
Q Consensus 157 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~-------------- 222 (737)
+|++++|+++.++.+++.+++++++++++++++.... .+....... ....++...
T Consensus 98 ~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~---------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 166 (562)
T PRK12492 98 AGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGK---------LVQEVLPDT--GIEYLIEAKMGDLLPAAKGWLVN 166 (562)
T ss_pred cCeEEeccCccCCHHHHHHHHhccCceEEEeccccch---------HHHHhhhcc--CceEEEeechhhccccccchhcc
Confidence 9999999999999999999999999999999764321 111111110 011111000
Q ss_pred ccccc----ccccCCCCcccHHHHHhhcCC--CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHH
Q psy8076 223 RRCVE----EAELTPGYDILWDDALAQRLS--HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIA 296 (737)
Q Consensus 223 ~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~ 296 (737)
..... ...........|.+....... ....+...+++++++||||||| .||||+++|+++..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PKgv~~s~~~l~~ 234 (562)
T PRK12492 167 TVVDKVKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTG------------LAKGAMLTHGNLVA 234 (562)
T ss_pred cccccccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCC------------CCceEEEechhHHH
Confidence 00000 000001122345554433221 1223456789999999999999 99999999998765
Q ss_pred HHHHHHhhhhc---------CCC-CcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCc
Q psy8076 297 TLAWTMSVIYN---------MGQ-DDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVN 366 (737)
Q Consensus 297 ~~~~~~~~~~~---------~~~-~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt 366 (737)
........ ++ +.. +++++..+|++|.+++...++..+..|+.+++... ..++..+++.++++++|
T Consensus 235 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~i~~~~~t 309 (562)
T PRK12492 235 NMLQVRAC-LSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITN----PRDIPGFIKELGKWRFS 309 (562)
T ss_pred HHHHHHHH-HhcccccccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecC----CcCHHHHHHHHHHhCCc
Confidence 54432221 21 223 35778899999999987767788889988777653 25789999999999999
Q ss_pred EEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCC
Q psy8076 367 GLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDT 446 (737)
Q Consensus 367 ~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 446 (737)
++..+|+++..|.+.... ...+++++|.+++||+++++++.++|.+.+++++++.||+||++..++.... ...
T Consensus 310 ~~~~~p~~~~~l~~~~~~----~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~---~~~ 382 (562)
T PRK12492 310 ALLGLNTLFVALMDHPGF----KDLDFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPY---GEL 382 (562)
T ss_pred eeeCcHHHHHHHHhCcCc----ccccccceeEEEeccccCCHHHHHHHHHHhCCceeeccCccccCceeeecCC---ccc
Confidence 999999999998876432 3456789999999999999999999999899999999999999876554322 112
Q ss_pred CCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEe
Q psy8076 447 VPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVK 526 (737)
Q Consensus 447 ~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~ 526 (737)
..+ +++|+|++++. ++ |+|+++++++.|+.|||+|+
T Consensus 383 ~~~-~~~G~p~~~~~-----v~--------------------------------------ivd~~~~~~~~g~~Gel~v~ 418 (562)
T PRK12492 383 ARL-GTVGIPVPGTA-----LK--------------------------------------VIDDDGNELPLGERGELCIK 418 (562)
T ss_pred ccC-CccceecCCCE-----EE--------------------------------------EECCCCCCCCCCCceEEEEe
Confidence 233 67888888877 77 99999999999999999999
Q ss_pred cCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeE
Q psy8076 527 LPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTA 606 (737)
Q Consensus 527 g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~ 606 (737)
|+ .++.|||++++.+.+.|. .+|||+|||+|+++++|+++|.||.||+||++|++|+|.|||+.|.+||.|.+++
T Consensus 419 g~---~~~~gY~~~~~~t~~~~~--~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~ 493 (562)
T PRK12492 419 GP---QVMKGYWQQPEATAEALD--AEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCA 493 (562)
T ss_pred CC---ccccccccCchhhhhccc--CCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEE
Confidence 99 899999999998877652 3789999999999999999999999999999999999999999999999999999
Q ss_pred EecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHH
Q psy8076 607 VIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVR 686 (737)
Q Consensus 607 vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 686 (737)
|++.++...++.++++++.... . ...++++++++
T Consensus 494 v~~~~~~~~~~~~~~~v~~~~~------------~----------------------------------~~~~~i~~~~~ 527 (562)
T PRK12492 494 AIGVPDERSGEAVKLFVVARDP------------G----------------------------------LSVEELKAYCK 527 (562)
T ss_pred EEeccCCCCCceEEEEEEeCCC------------C----------------------------------CCHHHHHHHHH
Confidence 9999988888889998886543 0 12467999999
Q ss_pred HhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHH
Q psy8076 687 EAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDM 720 (737)
Q Consensus 687 ~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~ 720 (737)
++|+.|++|..++++++||+|++||++|++|+++
T Consensus 528 ~~l~~~~~P~~i~~~~~~P~t~~GK~~r~~L~~~ 561 (562)
T PRK12492 528 ENFTGYKVPKHIVLRDSLPMTPVGKILRRELRDI 561 (562)
T ss_pred HhcccccCCcEEEEeccCCCCCCCceeHHHHHhh
Confidence 9999999999999999999999999999999875
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=570.83 Aligned_cols=509 Identities=21% Similarity=0.275 Sum_probs=411.5
Q ss_pred hhHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHH
Q psy8076 76 INACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATV 155 (737)
Q Consensus 76 ~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~ 155 (737)
.+.+.++|.++++++ |+++|+++.+ ..+||+||+++++++|++|.+.|+++||+|+++++|++++++++|||+
T Consensus 22 ~~~i~~~l~~~a~~~-p~~~a~~~~~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~ 94 (557)
T PRK07059 22 YPSLADLLEESFRQY-ADRPAFICMG------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVL 94 (557)
T ss_pred CCCHHHHHHHHHHHc-CCCceEEEcC------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 345788999999888 9999999876 899999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEeccccc--------
Q psy8076 156 RLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE-------- 227 (737)
Q Consensus 156 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~-------- 227 (737)
++|++++|++|.++.+++.+++++++++++++++.. ...+....... ..+.+++.......
T Consensus 95 ~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 163 (557)
T PRK07059 95 RAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENF---------ATTVQQVLAKT--AVKHVVVASMGDLLGFKGHIVN 163 (557)
T ss_pred hcCeEEeccCcccCHHHHHHHHHccCceEEEEchhh---------HHHHHHhhccc--CCceeEEecccccccccccccc
Confidence 999999999999999999999999999999997642 22222222211 22333332211000
Q ss_pred ---------ccccCCCCcccHHHHHhhcCC--CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHH
Q psy8076 228 ---------EAELTPGYDILWDDALAQRLS--HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIA 296 (737)
Q Consensus 228 ---------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~ 296 (737)
...+.......+.+....... .......++++++++||||||| .||||+++|++++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG------------~PK~v~~s~~~l~~ 231 (557)
T PRK07059 164 FVVRRVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTG------------VSKGATLLHRNIVA 231 (557)
T ss_pred cccccccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCC------------CCcEEEeecHHHHH
Confidence 001112223445444433221 2233467889999999999999 99999999988765
Q ss_pred HHHHHHh---hhhcCC---CCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEee
Q psy8076 297 TLAWTMS---VIYNMG---QDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFT 370 (737)
Q Consensus 297 ~~~~~~~---~~~~~~---~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~ 370 (737)
+...... ..+... ...+++..+|++|.+++....+.++..|++.++.+. ..++..+++.++++++|.+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~i~~~~vt~~~~ 307 (557)
T PRK07059 232 NVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPN----PRDIPGFIKELKKYQVHIFPA 307 (557)
T ss_pred HHHHHhhhhcccccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecC----CcCHHHHHHHHHHhCCeeeec
Confidence 5432111 111111 245778889999988876666778888998887763 247889999999999999999
Q ss_pred cHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCC
Q psy8076 371 APTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPK 450 (737)
Q Consensus 371 ~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~ 450 (737)
+|+++..+...... ...+++++|.++.||+++++.+.++|.+.++.++++.||+||++..++.... .....+
T Consensus 308 ~p~~~~~l~~~~~~----~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~---~~~~~~- 379 (557)
T PRK07059 308 VNTLYNALLNNPDF----DKLDFSKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSETSPVATCNPV---DATEFS- 379 (557)
T ss_pred CHHHHHHHHcCcCc----CcCCchhheEEEeccccCCHHHHHHHHHHhCCCeeeccccccccchhhcCCC---CCCCcC-
Confidence 99999999876432 3456789999999999999999999999999999999999999876554322 122233
Q ss_pred CccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCC
Q psy8076 451 YSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLP 530 (737)
Q Consensus 451 ~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~ 530 (737)
.++|.|++|+. ++ |+|++|++++.|+.|||+++|+
T Consensus 380 ~~vG~p~~g~~-----v~--------------------------------------i~d~~~~~~~~g~~Gel~v~g~-- 414 (557)
T PRK07059 380 GTIGLPLPSTE-----VS--------------------------------------IRDDDGNDLPLGEPGEICIRGP-- 414 (557)
T ss_pred CcccCccCCcE-----EE--------------------------------------EECCCCCCCCCCCceEEEEeCC--
Confidence 68888988887 77 9999999999999999999999
Q ss_pred CCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecc
Q psy8076 531 PGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGV 610 (737)
Q Consensus 531 ~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~ 610 (737)
.++.||+++++.+.+.+. .+|||+|||++++++||+++++||.||+||++|++|+|.|||++|.+||+|.+++|+++
T Consensus 415 -~~~~gY~~~~~~~~~~~~--~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~ 491 (557)
T PRK07059 415 -QVMAGYWNRPDETAKVMT--ADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGV 491 (557)
T ss_pred -ccchhhhcCHHHHhhhcc--cCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCceeEEEEEec
Confidence 999999999998877653 37999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcC
Q psy8076 611 PEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIG 690 (737)
Q Consensus 611 ~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 690 (737)
+++..++.++++++.... . ...+++++++++.++
T Consensus 492 ~~~~~ge~~~~~v~~~~~------------~----------------------------------~~~~~l~~~~~~~l~ 525 (557)
T PRK07059 492 PDEHSGEAVKLFVVKKDP------------A----------------------------------LTEEDVKAFCKERLT 525 (557)
T ss_pred ccCCCCeeEEEEEEeCCC------------C----------------------------------CCHHHHHHHHHHhcc
Confidence 998888889998886543 0 124578889999999
Q ss_pred CceeeeeEEEcCCCCCCCCchhhHHHHHHH
Q psy8076 691 PIAAFKLSTSVTGLPRTRSGKTARKSIVDM 720 (737)
Q Consensus 691 ~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~ 720 (737)
.++.|..+++++++|+|++||++|+.|+++
T Consensus 526 ~~~~P~~i~~v~~~P~t~~GK~~r~~L~~~ 555 (557)
T PRK07059 526 NYKRPKFVEFRTELPKTNVGKILRRELRDG 555 (557)
T ss_pred cccCCcEEEEeccCCCCcccceeHHHHHhh
Confidence 999999999999999999999999999865
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-63 Score=564.59 Aligned_cols=496 Identities=19% Similarity=0.239 Sum_probs=405.6
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcC
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 158 (737)
+.+.|.+++... |+++|+.+.+ +.+||+||.+++.++|+.|.+.|+++|++|+++++|+.++++++|||+++|
T Consensus 2 ~~~~l~~~a~~~-p~~~a~~~~~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G 74 (502)
T TIGR01734 2 LIEAIQAFAETY-PQTIAYRYQG------QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSG 74 (502)
T ss_pred HHHHHHHHHHHC-CCceEEEcCC------cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhC
Confidence 457888888888 9999998876 899999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCccc
Q psy8076 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL 238 (737)
Q Consensus 159 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~ 238 (737)
++++|+++.++.+++..+++..+++.+++++...... . .. .++.+..
T Consensus 75 ~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~----------------~-~~-~~~~~~~--------------- 121 (502)
T TIGR01734 75 HAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDA----------------V-GT-QIITLSA--------------- 121 (502)
T ss_pred CEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccc----------------c-CC-ceEEchH---------------
Confidence 9999999999999999999999999999986531100 0 00 0111110
Q ss_pred HHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEe
Q psy8076 239 WDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317 (737)
Q Consensus 239 ~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~ 317 (737)
.......... ....+..++++++++||||||| .||+|+++|+++.....+ ....+++..+++++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~il~TSGTTG------------~PK~v~~s~~~~~~~~~~-~~~~~~~~~~~~~l~~ 188 (502)
T TIGR01734 122 LEQAETSGGPVSFDHAVKGDDNYYIIYTSGSTG------------NPKGVQISHDNLVSFTNW-MLADFPLSEGKQFLNQ 188 (502)
T ss_pred hhhhhhhcCCccccccCCCCCeEEEEECCCCCC------------CCCEEEEecHHHHHHHHH-HHHhCCCCCCceEEee
Confidence 0011111111 1112356789999999999999 999999999887666655 3444788999999999
Q ss_pred cccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCcc
Q psy8076 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLR 397 (737)
Q Consensus 318 ~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr 397 (737)
.|++|..++ ..++.++..|+++++++... ..++..+++.++++++|.+.++|++++.+...... ....++++|
T Consensus 189 ~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~----~~~~~~~l~ 261 (502)
T TIGR01734 189 APFSFDLSV-MDLYPCLASGGTLHCLDKDI--TNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNF----NQENYPHLT 261 (502)
T ss_pred cCceechhH-HHHHHHHHCCCEEEEcCHHH--hcCHHHHHHHHHHcCCeEEEEChhHHHHHHhcccc----ccccCCccc
Confidence 999999885 45889999999999987532 26889999999999999999999999887654322 344678999
Q ss_pred EEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCc
Q psy8076 398 YLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGR 476 (737)
Q Consensus 398 ~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~ 476 (737)
.++++|+++++++.+++.+.+ +..+++.||+||+++.++...............++|.|.++++ ++
T Consensus 262 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~-----~~-------- 328 (502)
T TIGR01734 262 HFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMN-----LF-------- 328 (502)
T ss_pred EEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCCccccccccCCCE-----EE--------
Confidence 999999999999999999887 6899999999999865554332111111111156777777777 66
Q ss_pred cccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccC-CCCe
Q psy8076 477 AHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTK-FPGY 555 (737)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~-~~g~ 555 (737)
|+|+++++++.|+.|||+|+|+ .++.||+++++.+.+.|+.. ..+|
T Consensus 329 ------------------------------i~~~~~~~~~~g~~Gel~v~g~---~~~~gy~~~~~~~~~~~~~~~~~~~ 375 (502)
T TIGR01734 329 ------------------------------IMDEEGEPLPEGEKGEIVIVGP---SVSKGYLNNPEKTAEAFFSHEGQPA 375 (502)
T ss_pred ------------------------------EECCCCCCCCCCCeeEEEEccc---cccccccCCcccchHhheeCCCcEE
Confidence 9999999999999999999999 99999999999888877543 2359
Q ss_pred eecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEeccc-CCCCCcceEEEEEeecCCCCcCC
Q psy8076 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVP-EPTKGEIPFCLYIKKRIPLDKMG 634 (737)
Q Consensus 556 ~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~-~~~~~~~~~a~v~~~~~~~~~~~ 634 (737)
|+|||+|++|++ +++++||.+|+||++|++|+|.|||++|.++|.|.+++++++. ....++.++++++....
T Consensus 376 ~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~------ 448 (502)
T TIGR01734 376 YRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETE------ 448 (502)
T ss_pred EECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEeccc------
Confidence 999999999876 9999999999999999999999999999999999999999976 44456788999987664
Q ss_pred ccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhH
Q psy8076 635 FSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTAR 714 (737)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R 714 (737)
.. .....+.+++++.++++++++++|+.++++++||+|++||++|
T Consensus 449 ------~~-----------------------------~~~~~~~~~i~~~~~~~l~~~~~P~~~~~v~~lP~t~~gKv~r 493 (502)
T TIGR01734 449 ------DF-----------------------------EKEFQLTKAIKKELKKSLPAYMIPRKFIYRDQLPLTANGKIDR 493 (502)
T ss_pred ------cc-----------------------------ccchhhHHHHHHHHhhhChhhcCCcEEEEccccCCCCCCcccH
Confidence 10 1223456889999999999999999999999999999999999
Q ss_pred HHHHHHHc
Q psy8076 715 KSIVDMAR 722 (737)
Q Consensus 715 ~~l~~~~~ 722 (737)
++|++++.
T Consensus 494 ~~l~~~~~ 501 (502)
T TIGR01734 494 KALAEEVN 501 (502)
T ss_pred HHHHHhhc
Confidence 99999875
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-63 Score=566.83 Aligned_cols=503 Identities=22% Similarity=0.312 Sum_probs=408.4
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
.+.++|+++++ |+++|+++.+ +.+||+||+++++++|+.|.+.|+++|++|+++++|++++++++|||+++
T Consensus 26 ~~~~~~~~~a~---p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~ 96 (536)
T PRK10946 26 PLTDILTRHAA---SDAIAVICGE------RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKL 96 (536)
T ss_pred cHHHHHHHhhC---CCCeEEEeCC------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHc
Confidence 36788888875 9999999875 88999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++++.+..+..++..++++++++++++++..... .............+ ....+++.... ...
T Consensus 97 G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----~~~~~~~~l~~~~~-~~~~~~~~~~~----------~~~ 161 (536)
T PRK10946 97 GVAPVNALFSHQRSELNAYASQIEPALLIADRQHALF----SDDDFLNTLVAEHS-SLRVVLLLNDD----------GEH 161 (536)
T ss_pred CeEEecCCccccHHHHHHHHhhcCCCEEEEecccccc----chHHHHHHHHhhCC-CceEEEEecCC----------CCc
Confidence 9988877777778889999999999999998642110 00111222222222 33333332211 122
Q ss_pred cHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEE
Q psy8076 238 LWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWT 316 (737)
Q Consensus 238 ~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~ 316 (737)
.+.+....... ....+..++++++++||||||| .||||+++|+++..+... ....++++.+|++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PKgV~~s~~~l~~~~~~-~~~~~~~~~~~~~l~ 228 (536)
T PRK10946 162 SLDDAINHPAEDFTATPSPADEVAFFQLSGGSTG------------TPKLIPRTHNDYYYSVRR-SVEICGFTPQTRYLC 228 (536)
T ss_pred cHHHHhhCcccccccCCCCCCCeEEEEeCCCCCC------------CCcEEEEehHHHHHHHHH-HHHhcCCCCCceEEE
Confidence 23333332221 1223456789999999999999 999999999887766654 455688999999999
Q ss_pred ecccccccchhh-hhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCC
Q psy8076 317 ASDMGWVVGHSY-ICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395 (737)
Q Consensus 317 ~~~~~~~~g~~~-~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~ 395 (737)
.+|++|.+++.. .++.+|..|+++++.+. +++..++++++++++|++.++|++++.|.+...... ....+++
T Consensus 229 ~~p~~h~~~~~~~~~~~~l~~g~~~~~~~~-----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~--~~~~~~~ 301 (536)
T PRK10946 229 ALPAAHNYPMSSPGALGVFLAGGTVVLAPD-----PSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGG--SRAQLAS 301 (536)
T ss_pred ecCccccccchhhhHHHHhhcCcEEEECCC-----CCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccC--ccccccc
Confidence 999999888653 57888999999998753 688899999999999999999999999987532211 3345789
Q ss_pred ccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCc-CCCCCCcceeeeecccc
Q psy8076 396 LRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPF-PGYDGKYVNIVMLNWLD 474 (737)
Q Consensus 396 Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~-~g~~~~~~~~~~~~~~~ 474 (737)
||.+++||+++++++.+++.+.+++++++.||+||++...+. .. ....... .++|+|+ +++. ++
T Consensus 302 l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~--~~-~~~~~~~-~~~G~p~~~~~~-----v~------ 366 (536)
T PRK10946 302 LKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTR--LD-DSDERIF-TTQGRPMSPDDE-----VW------ 366 (536)
T ss_pred eeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeec--CC-Ccccccc-ccCCcccCCCce-----EE------
Confidence 999999999999999999999999999999999997643322 11 1111223 5778887 5666 66
Q ss_pred CccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCC
Q psy8076 475 GRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPG 554 (737)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g 554 (737)
|+|++|++++.|+.|||+++|+ .++.||+++++.+.+.|.. +|
T Consensus 367 --------------------------------i~d~~~~~~~~g~~Gel~v~g~---~~~~GY~~~~~~t~~~~~~--d~ 409 (536)
T PRK10946 367 --------------------------------VADADGNPLPQGEVGRLMTRGP---YTFRGYYKSPQHNASAFDA--NG 409 (536)
T ss_pred --------------------------------EECCCCCCCCCCCccEEEEecC---ccchhhcCCcccchhhccc--CC
Confidence 9999999999999999999999 9999999999888776533 78
Q ss_pred eeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCC
Q psy8076 555 YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMG 634 (737)
Q Consensus 555 ~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~ 634 (737)
||+|||+|++|+||++++.||.+|+||++|++|+|.|||+.|.+||+|.+++|++.+++..++.+++++++++.
T Consensus 410 ~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~------ 483 (536)
T PRK10946 410 FYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEP------ 483 (536)
T ss_pred ceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCC------
Confidence 99999999999999999999999999999999999999999999999999999999998888889999987653
Q ss_pred ccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHh-cCCceeeeeEEEcCCCCCCCCchhh
Q psy8076 635 FSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREA-IGPIAAFKLSTSVTGLPRTRSGKTA 713 (737)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~v~~lP~t~sGKi~ 713 (737)
. ...++++++++. ++.|++|..+++++++|+|++||++
T Consensus 484 ------~-----------------------------------~~~~l~~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKv~ 522 (536)
T PRK10946 484 ------L-----------------------------------KAVQLRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVD 522 (536)
T ss_pred ------C-----------------------------------CHHHHHHHHHhCCccccccCcEEEEeccCCCCCCCccc
Confidence 1 135788888875 9999999999999999999999999
Q ss_pred HHHHHHHHcC
Q psy8076 714 RKSIVDMARN 723 (737)
Q Consensus 714 R~~l~~~~~~ 723 (737)
|+.|++++..
T Consensus 523 r~~L~~~~~~ 532 (536)
T PRK10946 523 KKQLRQWLAS 532 (536)
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=563.75 Aligned_cols=480 Identities=20% Similarity=0.271 Sum_probs=396.2
Q ss_pred hhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEe
Q psy8076 84 DRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSV 163 (737)
Q Consensus 84 ~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vp 163 (737)
+.+++.. ||++|+.+.. ....+||+||+++++++|++|.+.|+++|++|+++++|++++++++|||+++|++++|
T Consensus 2 ~~~a~~~-p~~~a~~~~~----~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 76 (488)
T PRK09088 2 AFHARLQ-PQRLAAVDLA----LGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVP 76 (488)
T ss_pred chhhhhC-CCceEEEecC----CCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEe
Confidence 4556666 9999998632 1278999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHHH
Q psy8076 164 VFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDAL 243 (737)
Q Consensus 164 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~ 243 (737)
+++.++.+++..++++++++++++++....... . ...++++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~--------------------~------------------~~~~~~~~ 118 (488)
T PRK09088 77 LNWRLSASELDALLQDAEPRLLLGDDAVAAGRT--------------------D------------------VEDLAAFI 118 (488)
T ss_pred eCccCCHHHHHHHHHhCCCCEEEEcchhhcccc--------------------c------------------ccchhhhh
Confidence 999999999999999999999999764321000 0 00011111
Q ss_pred h---hcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEeccc
Q psy8076 244 A---QRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDM 320 (737)
Q Consensus 244 ~---~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~ 320 (737)
. ...........++++++++||||||| .||+|+++|++++.... .+...+.+..+|++++.+|+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG------------~PK~v~~s~~~l~~~~~-~~~~~~~~~~~d~~l~~~pl 185 (488)
T PRK09088 119 ASADALEPADTPSIPPERVSLILFTSGTSG------------QPKGVMLSERNLQQTAH-NFGVLGRVDAHSSFLCDAPM 185 (488)
T ss_pred hhccccccccCCCCCCCCceEEEeCCCCCC------------CCcEEEEehHHHHHHHH-HHHHhhCCCCCcEEEEecch
Confidence 0 00011112345688999999999999 99999999988655443 34455678899999999999
Q ss_pred ccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHH--hcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccE
Q psy8076 321 GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIH--NHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRY 398 (737)
Q Consensus 321 ~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~--~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~ 398 (737)
+|++++...++.++..|+++++.++ .++..++..+. ++++|+++++|++++.+.+.... ...++++||.
T Consensus 186 ~~~~g~~~~~~~~l~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~----~~~~~~~l~~ 256 (488)
T PRK09088 186 FHIIGLITSVRPVLAVGGSILVSNG-----FEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGF----DAAALRHLTA 256 (488)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEcCC-----CCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCc----CccccccceE
Confidence 9999988778889999999998763 57788888886 48999999999999998875432 2345789999
Q ss_pred EEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccc
Q psy8076 399 LFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAH 478 (737)
Q Consensus 399 i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~ 478 (737)
+++||++++.+..+.+.+. +.++++.||+||++..+..... ......++ +++|.|++++. ++
T Consensus 257 ~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~-~~~~~~~~-~~vG~~~~~~~-----~~---------- 318 (488)
T PRK09088 257 LFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVD-CDVIRAKA-GAAGIPTPTVQ-----TR---------- 318 (488)
T ss_pred EEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCC-cccccccC-CccccCCCCcE-----EE----------
Confidence 9999999999988877754 8899999999999865432111 01112234 67888988888 77
Q ss_pred cccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeec
Q psy8076 479 CVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDT 558 (737)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~T 558 (737)
|+|+++++++.|+.|||+|+|| +++.||+++++.+.+.+. .+|||+|
T Consensus 319 ----------------------------i~d~~~~~~~~g~~Gel~v~~~---~~~~gY~~~~~~~~~~~~--~~g~~~T 365 (488)
T PRK09088 319 ----------------------------VVDDQGNDCPAGVPGELLLRGP---NLSPGYWRRPQATARAFT--GDGWFRT 365 (488)
T ss_pred ----------------------------EECCCCCCCcCCCceEEEEECC---ccchhhcCChhhhhhhhc--CCCCeee
Confidence 9999999999999999999999 999999999998876653 3799999
Q ss_pred CceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCcccc
Q psy8076 559 MDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGL 638 (737)
Q Consensus 559 GDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~ 638 (737)
||+|+++++|+++|.||.||+||++|++|+|.|||++|.++|.|.+++|++++++..++..+++|++.+.
T Consensus 366 GDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~---------- 435 (488)
T PRK09088 366 GDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADG---------- 435 (488)
T ss_pred cceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCC----------
Confidence 9999999999999999999999999999999999999999999999999999988778888899887654
Q ss_pred ccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHH
Q psy8076 639 IGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIV 718 (737)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~ 718 (737)
. . ...++++++++++++.+++|..++++++||+|++||++|++|+
T Consensus 436 --~-------------------------------~--~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~ 480 (488)
T PRK09088 436 --A-------------------------------P--LDLERIRSHLSTRLAKYKVPKHLRLVDALPRTASGKLQKARLR 480 (488)
T ss_pred --C-------------------------------C--CCHHHHHHHHHhhCcCCCCCCEEEEcccCCCCCCCceeHHHHH
Confidence 1 0 1246799999999999999999999999999999999999999
Q ss_pred HHHcCC
Q psy8076 719 DMARNK 724 (737)
Q Consensus 719 ~~~~~~ 724 (737)
+++.+.
T Consensus 481 ~~~~~~ 486 (488)
T PRK09088 481 DALAAG 486 (488)
T ss_pred HHHHhc
Confidence 988753
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=567.22 Aligned_cols=500 Identities=18% Similarity=0.220 Sum_probs=397.4
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEecCCHHHHHHHHHHHH
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGV-SAGDRVLIYMPLIPEAIVSMLATVR 156 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv-~~Gd~V~i~~~~~~e~vva~lA~~~ 156 (737)
++.++|..++ . |+++|+++.+ ..+||.||.++++++|+.|.+.|+ ++|++|+++++|+++++++++||++
T Consensus 4 ~~~~~l~~~~--~-p~~~Al~~~~------~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~ 74 (540)
T PRK13388 4 TIAQLLRDRA--G-DDTIAVRYGD------RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAAL 74 (540)
T ss_pred hHHHHHHhhc--c-CCceEEEECC------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHh
Confidence 4567776654 4 9999999875 799999999999999999999999 8999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCc
Q psy8076 157 LGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYD 236 (737)
Q Consensus 157 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~ 236 (737)
+|++++|++|.++.+++..++++++++++|+++... ..+.+. . .+ .. +++++..
T Consensus 75 ~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~---------~~~~~~-~-~~-~~-~~i~~~~------------- 128 (540)
T PRK13388 75 GGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHR---------PLLDGL-D-LP-GV-RVLDVDT------------- 128 (540)
T ss_pred CCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhh---------HHHHhh-c-cc-Cc-eEEEccc-------------
Confidence 999999999999999999999999999999986421 111111 0 11 12 2333221
Q ss_pred ccHHHHHhhcC-CCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEE
Q psy8076 237 ILWDDALAQRL-SHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWW 315 (737)
Q Consensus 237 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l 315 (737)
..+.+...... ..+.....++++++++||||||| .||||+++|++++.... .+...+++..+|+++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PKgv~~s~~~~~~~~~-~~~~~~~~~~~d~~l 195 (540)
T PRK13388 129 PAYAELVAAAGALTPHREVDAMDPFMLIFTSGTTG------------APKAVRCSHGRLAFAGR-ALTERFGLTRDDVCY 195 (540)
T ss_pred hhhhhhhccccCcCCCCCCCCCCeEEEEECCCCCC------------CCCEEEecHHHHHHHHH-HHHHHhCCCCCCEEE
Confidence 11222222111 11222356799999999999999 99999999988655444 355668999999999
Q ss_pred EecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCC
Q psy8076 316 TASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395 (737)
Q Consensus 316 ~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~ 395 (737)
..+|++|..++...++.+|..|+++++.+ ..++..+++.++++++|++..+|+.+..+...... ......+
T Consensus 196 ~~~p~~~~~~~~~~~~~~l~~G~~~v~~~-----~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~----~~~~~~~ 266 (540)
T PRK13388 196 VSMPLFHSNAVMAGWAPAVASGAAVALPA-----KFSASGFLDDVRRYGATYFNYVGKPLAYILATPER----PDDADNP 266 (540)
T ss_pred EeeCchhhcchHHHHHHHHHcCcEEEECC-----CCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCC----ccccccc
Confidence 99999999987665667899999998865 26789999999999999999999999988865432 1112345
Q ss_pred ccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccC
Q psy8076 396 LRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDG 475 (737)
Q Consensus 396 Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~ 475 (737)
+|.+ .|++++++...+|.+.++.++++.||+||++..++.. ....+ +++|+|++|+. +..-
T Consensus 267 l~~~--~G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~------~~~~~-~~vG~p~~g~~-----i~~~----- 327 (540)
T PRK13388 267 LRVA--FGNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVRE------PGTPP-GSIGRGAPGVA-----IYNP----- 327 (540)
T ss_pred eEEE--ECCCCCHHHHHHHHHHhCCceecccccccccceeecC------CCCCC-CCCCCCCCCcE-----EEcC-----
Confidence 6643 3667788888999988999999999999998655432 11233 78999999876 5400
Q ss_pred ccccccccccccccCCCCCCCCcccccceEEEEcCCCCcc-CCCcceEEEEe-cCCCCCcccccccChhhhHHhhccCCC
Q psy8076 476 RAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSEC-EPHELGRIVVK-LPLPPGTMSTLYKAPQRFMKIYFTKFP 553 (737)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~-~~g~~GEL~i~-g~~~~~~~~gy~~~~~~~~~~~~~~~~ 553 (737)
.. .. ...+.++|++|+.+ +.+..|||+++ |+ +++.||+++++.+.+.| .+
T Consensus 328 ---------~~-~~------------~~~~~~~d~~g~~~~~~~~~GEl~v~~g~---~~~~gY~~~~~~t~~~~---~~ 379 (540)
T PRK13388 328 ---------ET-LT------------ECAVARFDAHGALLNADEAIGELVNTAGA---GFFEGYYNNPEATAERM---RH 379 (540)
T ss_pred ---------CC-Cc------------cccceeccCccccccCCCcceEEEEecCC---cccccccCChHHHHHHh---hc
Confidence 00 00 01122788888887 45789999998 98 99999999999988776 26
Q ss_pred CeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcC
Q psy8076 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKM 633 (737)
Q Consensus 554 g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~ 633 (737)
|||+|||+|++|+||++++.||.||+||++|++|+|.|||++|.+||+|.+|+|++++++..|+.+++++++.++
T Consensus 380 g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~----- 454 (540)
T PRK13388 380 GMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDG----- 454 (540)
T ss_pred CceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCC-----
Confidence 899999999999999999999999999999999999999999999999999999999988888888898888664
Q ss_pred CccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHH--hcCCceeeeeEEEcCCCCCCCCch
Q psy8076 634 GFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVRE--AIGPIAAFKLSTSVTGLPRTRSGK 711 (737)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~l~~~~~p~~~~~v~~lP~t~sGK 711 (737)
. ....++++++++. .|+.+++|..++++++||+|++||
T Consensus 455 -------~---------------------------------~~~~~~l~~~l~~~~~l~~~~~P~~~~~v~~iP~t~~GK 494 (540)
T PRK13388 455 -------A---------------------------------TFDPDAFAAFLAAQPDLGTKAWPRYVRIAADLPSTATNK 494 (540)
T ss_pred -------C---------------------------------cCCHHHHHHHHHhhccCCcccCCcEEEEeccCCCCCcce
Confidence 1 0113567777765 499999999999999999999999
Q ss_pred hhHHHHHHHHcCCCC
Q psy8076 712 TARKSIVDMARNKPL 726 (737)
Q Consensus 712 i~R~~l~~~~~~~~~ 726 (737)
++|++|+++..+.+-
T Consensus 495 v~R~~L~~~~~~~~~ 509 (540)
T PRK13388 495 VLKRELIAQGWATGD 509 (540)
T ss_pred eeHHhHHHhccCCCC
Confidence 999999998876644
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-63 Score=565.28 Aligned_cols=504 Identities=22% Similarity=0.259 Sum_probs=413.9
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|.++++++ |+++|+++.+ +.+||+||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++
T Consensus 13 ~~~~~~~~~~~~~-~~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~ 85 (524)
T PRK06188 13 TYGHLLVSALKRY-PDRPALVLGD------TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLA 85 (524)
T ss_pred cHHHHHHHHHHHC-CCCeEEEECC------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 4678999999988 9999999876 89999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|++|..+.+++..+++.++++.+++++.. +...+.+.....+ ...+++.+..... ...
T Consensus 86 G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~--------~~~ 148 (524)
T PRK06188 86 GLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAP--------FVERALALLARVP-SLKHVLTLGPVPD--------GVD 148 (524)
T ss_pred CCEEEecccCCCHHHHHHHHHhcCceEEEEecch--------hhHHHHHHhhhcC-CceEEEEeCCccc--------hhh
Confidence 9999999999999999999999999999998642 1122222222222 3344444332100 000
Q ss_pred cHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEe
Q psy8076 238 LWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317 (737)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~ 317 (737)
.+................++++++++||||||| .||+|+++|.+++..... ....+++..+|++++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG------------~pk~v~~s~~~l~~~~~~-~~~~~~~~~~~~~l~~ 215 (524)
T PRK06188 149 LLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTG------------KPKGVMGTHRSIATMAQI-QLAEWEWPADPRFLMC 215 (524)
T ss_pred HHHhhhccCcccccccCCCCCeEEEEeCCCCCC------------CCceeeeehHHHHHHHHH-HHhhcCCCcCcEEEEe
Confidence 011111001111111234567999999999999 999999999886655544 5556889999999999
Q ss_pred cccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCcc
Q psy8076 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLR 397 (737)
Q Consensus 318 ~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr 397 (737)
+|++|..++. ++.++..|+++++.+. .++..+++.++++++|+++++|+++..+.+.... ...+++++|
T Consensus 216 ~pl~~~~g~~--~~~~l~~G~~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~----~~~~l~~lr 284 (524)
T PRK06188 216 TPLSHAGGAF--FLPTLLRGGTVIVLAK-----FDPAEVLRAIEEQRITATFLVPTMIYALLDHPDL----RTRDLSSLE 284 (524)
T ss_pred cCchhhhhHH--HHHHHHcCCEEEEcCC-----CCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCc----cCCCCccee
Confidence 9999988753 5788999999999873 6799999999999999999999999999886543 344788999
Q ss_pred EEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCC--CCCCCCCCccCCCcCCCCCCcceeeeeccccC
Q psy8076 398 YLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQ--HDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDG 475 (737)
Q Consensus 398 ~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~--~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~ 475 (737)
.+++||++++++..+.+.+.++..+++.||+||++..++....... ...... .++|+|++|+. ++
T Consensus 285 ~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~-~~~G~p~~g~~-----v~------- 351 (524)
T PRK06188 285 TVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRL-TSCGRPTPGLR-----VA------- 351 (524)
T ss_pred EEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhccccccccC-CccccccCCcE-----EE-------
Confidence 9999999999999999888899899999999999765554322110 112223 56788888777 66
Q ss_pred ccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCe
Q psy8076 476 RAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGY 555 (737)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~ 555 (737)
|+|+++++++.|+.|||+|+|+ .++.||+++++.+...+ .+||
T Consensus 352 -------------------------------i~~~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~~---~~g~ 394 (524)
T PRK06188 352 -------------------------------LLDEDGREVAQGEVGEICVRGP---LVMDGYWNRPEETAEAF---RDGW 394 (524)
T ss_pred -------------------------------EEcCCCCCCCCCCeeEEEEECc---chhhhhcCChHHhhhhh---cCCc
Confidence 9999999999999999999999 89999999998887765 2789
Q ss_pred eecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCc
Q psy8076 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGF 635 (737)
Q Consensus 556 ~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~ 635 (737)
|+|||++++++||+++|.||.||+||++|++|+|.+||++|.+|++|.+++|++.+++..++.+++++++.+.
T Consensus 395 ~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~------- 467 (524)
T PRK06188 395 LHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPG------- 467 (524)
T ss_pred eeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCC-------
Confidence 9999999999999999999999999999999999999999999999999999999988888899999998764
Q ss_pred cccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHH
Q psy8076 636 SGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARK 715 (737)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~ 715 (737)
. ....++|++++++.++.+++|..++++++||+|++||++|+
T Consensus 468 -----~---------------------------------~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~gKi~r~ 509 (524)
T PRK06188 468 -----A---------------------------------AVDAAELQAHVKERKGSVHAPKQVDFVDSLPLTALGKPDKK 509 (524)
T ss_pred -----C---------------------------------CCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCccccccHH
Confidence 1 01256799999999999999999999999999999999999
Q ss_pred HHHHHHcCC
Q psy8076 716 SIVDMARNK 724 (737)
Q Consensus 716 ~l~~~~~~~ 724 (737)
+|++++.++
T Consensus 510 ~L~~~~~~~ 518 (524)
T PRK06188 510 ALRARYWEG 518 (524)
T ss_pred HHHHHHHhh
Confidence 999998554
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-63 Score=568.13 Aligned_cols=521 Identities=24% Similarity=0.291 Sum_probs=414.8
Q ss_pred CCCCCCCchhHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHH
Q psy8076 68 TKWFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEA 147 (737)
Q Consensus 68 ~~~~~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~ 147 (737)
..||++... .+.++|+++++.. |+++|+.+.+ +.+||.||++++.++|++|.++|+++|++|+++++|++++
T Consensus 25 ~~~~~~~~~-~l~~~l~~~a~~~-p~~~al~~~~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~ 96 (567)
T PRK06178 25 EPEYPHGER-PLTEYLRAWARER-PQRPAIIFYG------HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQF 96 (567)
T ss_pred CCCCCcCcc-cHHHHHHHHHHHC-CCceEEEECC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHH
Confidence 356666665 4678888898888 9999999876 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEeccccc
Q psy8076 148 IVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE 227 (737)
Q Consensus 148 vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~ 227 (737)
+++++||+++|++++|++|.++..++.+++++++++++++++.. ...+.+..... ....+++.......
T Consensus 97 ~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~---------~~~l~~~~~~~--~~~~i~~~~~~~~~ 165 (567)
T PRK06178 97 HIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQL---------APVVEQVRAET--SLRHVIVTSLADVL 165 (567)
T ss_pred HHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccch---------HHHHHHhhccC--CcceEEEecccccc
Confidence 99999999999999999999999999999999999999998753 22233222222 23334333211000
Q ss_pred cc--ccCCC--------CcccHHHHHhhc----CCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCch
Q psy8076 228 EA--ELTPG--------YDILWDDALAQR----LSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGG 293 (737)
Q Consensus 228 ~~--~~~~~--------~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~ 293 (737)
.. ..... ....+.+..... .........++++++++||||||| .||||+++|++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PK~v~~t~~~ 233 (567)
T PRK06178 166 PAEPTLPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTG------------MPKGCEHTQRD 233 (567)
T ss_pred ccccccccccccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCC------------CCceEEeccHH
Confidence 00 00000 001111222111 111223456799999999999999 99999999998
Q ss_pred hHHHHHHHHhhhhcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHH
Q psy8076 294 HIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPT 373 (737)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~ 373 (737)
++............++.+|+++.++|++|+.|+...++.+|..|+++++.++ +++..+++.++++++|.+.++|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~-----~~~~~~~~~i~~~~~t~~~~~~~ 308 (567)
T PRK06178 234 MVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLAR-----WDAVAFMAAVERYRVTRTVMLVD 308 (567)
T ss_pred HHHHHHHHHHHhccCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCC-----CCHHHHHHHHHHhCCeEEeccHH
Confidence 7766554444446778999999999999999977678889999999999863 68999999999999999999999
Q ss_pred HHHHHHHcCCCCccccCCCCCCccEEEe--ecCCCCHHHHHHHHHhcCCccc-ccccccccccccccccccC-C--CCCC
Q psy8076 374 ALRVIRREDKDSTLGAQYSTDSLRYLFV--AGEHCDHETKNWAEKSFNVTML-NHWWQTETGHSITAHCLGY-Q--HDTV 447 (737)
Q Consensus 374 ~~~~l~~~~~~~~~~~~~~l~~Lr~i~~--gGe~l~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~-~--~~~~ 447 (737)
.+..+...... ...+++++|.+.. .|+.+++++.++|.+.+|..++ +.||+||++...+...... . ....
T Consensus 309 ~~~~l~~~~~~----~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~ 384 (567)
T PRK06178 309 NAVELMDHPRF----AEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLS 384 (567)
T ss_pred HHHHHHhCCCC----CCCCcchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCcccccc
Confidence 99988775432 3446778888654 4589999999999998887666 5799999986544332100 0 0112
Q ss_pred CCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEe
Q psy8076 448 PPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVK 526 (737)
Q Consensus 448 ~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~ 526 (737)
.+ +++|+|++|++ ++ |+| +++++++.|+.|||+|+
T Consensus 385 ~~-~~vG~p~~g~~-----v~--------------------------------------v~d~~~~~~~~~g~~Gel~v~ 420 (567)
T PRK06178 385 QP-VFVGLPVPGTE-----FK--------------------------------------ICDFETGELLPLGAEGEIVVR 420 (567)
T ss_pred CC-cccccccCCcE-----EE--------------------------------------EEcCCCCCcCCCCCceEEEEE
Confidence 23 56777777776 66 999 67999999999999999
Q ss_pred cCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeE
Q psy8076 527 LPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTA 606 (737)
Q Consensus 527 g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~ 606 (737)
|| +++.||+++++.+.+.+ .+|||+|||++++++||+++|+||.||+||++|++|++.|||+++.++|+|.+++
T Consensus 421 g~---~v~~gY~~~~~~~~~~~---~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~ 494 (567)
T PRK06178 421 TP---SLLKGYWNKPEATAEAL---RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSA 494 (567)
T ss_pred CC---cccccccCChhhhhhcc---cCCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEE
Confidence 99 99999999998887665 2689999999999999999999999999999999999999999999999999999
Q ss_pred EecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHH
Q psy8076 607 VIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVR 686 (737)
Q Consensus 607 vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 686 (737)
|++.+++..++.++++|+++++ . ....++|+++++
T Consensus 495 v~~~~~~~~g~~~~~~v~~~~~------------~---------------------------------~~~~~~l~~~~~ 529 (567)
T PRK06178 495 VVGRPDPDKGQVPVAFVQLKPG------------A---------------------------------DLTAAALQAWCR 529 (567)
T ss_pred EEcCcCcccCcceEEEEEeCCC------------C---------------------------------cCCHHHHHHHHH
Confidence 9999988888899999988764 1 112467999999
Q ss_pred HhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHHHcCC
Q psy8076 687 EAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNK 724 (737)
Q Consensus 687 ~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~~ 724 (737)
++++.+++|. +++++++|+|++||++|+.|++++.+.
T Consensus 530 ~~l~~~~~p~-i~~v~~iP~t~~GKv~r~~l~~~~~~~ 566 (567)
T PRK06178 530 ENMAVYKVPE-IRIVDALPMTATGKVRKQDLQALAEEL 566 (567)
T ss_pred hcCcccCCce-EEEeccCCCCCccceeHHHHHHHHHhh
Confidence 9999999996 888999999999999999999988653
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-63 Score=570.53 Aligned_cols=511 Identities=24% Similarity=0.343 Sum_probs=407.5
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
.+.++|++++..+ |+++|+++.+ +.+||+||++++.++|++|.+.|+++||+|+++++|+.++++++|||+++
T Consensus 25 ~~~~~~~~~a~~~-p~~~a~~~~~------~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 97 (563)
T PRK06710 25 PLHKYVEQMASRY-PEKKALHFLG------KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLA 97 (563)
T ss_pred cHHHHHHHHHHHC-CCceEEEecC------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHc
Confidence 4778899999888 9999999876 89999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccc---ccc-----
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCV---EEA----- 229 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~---~~~----- 229 (737)
|++++|++|.++.+++..+++.++++++++++....... ...... ....+++...... ...
T Consensus 98 G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~---------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 166 (563)
T PRK06710 98 GGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVT---------NVQSAT--KIEHVIVTRIADFLPFPKNLLYPF 166 (563)
T ss_pred CeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhh---------ccchhh--ccceeEEeccccccccccccccch
Confidence 999999999999999999999999999999875322111 100000 1122222110000 000
Q ss_pred --------ccC--CCC-cccHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHH
Q psy8076 230 --------ELT--PGY-DILWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIAT 297 (737)
Q Consensus 230 --------~~~--~~~-~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~ 297 (737)
... ... ...|......... .......++++++++||||||| .||||.++|++++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PK~v~~s~~~l~~~ 234 (563)
T PRK06710 167 VQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTG------------FPKGVMLTHKNLVSN 234 (563)
T ss_pred hhcccccccccccccchhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCC------------CCceEEEehHHHHHH
Confidence 000 000 0012221111111 1111133578999999999999 999999999887655
Q ss_pred HHHHHhhhhcCCC-CcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHH
Q psy8076 298 LAWTMSVIYNMGQ-DDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALR 376 (737)
Q Consensus 298 ~~~~~~~~~~~~~-~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~ 376 (737)
........++... ++++++..|++|..|+...++.++..|+++++.+. .++..+++.|+++++|++.++|+++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~ 309 (563)
T PRK06710 235 TLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPK-----FDMKMVFEAIKKHKVTLFPGAPTIYI 309 (563)
T ss_pred HHHHHhhccCCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCC-----CCHHHHHHHHHHcCCeEEeccHHHHH
Confidence 4433333344444 45889999999998876666778999999998763 58899999999999999999999999
Q ss_pred HHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCC
Q psy8076 377 VIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLP 456 (737)
Q Consensus 377 ~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p 456 (737)
.+...... ...++++||.+++||+++++++.+++.+.++.++++.||+||++........ .....+ +++|+|
T Consensus 310 ~l~~~~~~----~~~~~~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~---~~~~~~-~~~G~~ 381 (563)
T PRK06710 310 ALLNSPLL----KEYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFL---WEKRVP-GSIGVP 381 (563)
T ss_pred HHHcCCcc----ccCChhhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCccccccCcc---cccccC-CccCCC
Confidence 98875432 3346789999999999999999999999899999999999999865443221 112223 678888
Q ss_pred cCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCccc
Q psy8076 457 FPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMS 535 (737)
Q Consensus 457 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~ 535 (737)
++++. ++ |+| +++++++.|+.|||+++|+ .++.
T Consensus 382 ~~~~~-----~~--------------------------------------i~~~~~~~~~~~g~~Gel~v~g~---~~~~ 415 (563)
T PRK06710 382 WPDTE-----AM--------------------------------------IMSLETGEALPPGEIGEIVVKGP---QIMK 415 (563)
T ss_pred CCCCe-----EE--------------------------------------EEECCCCccCCCCCceEEEEecC---ccch
Confidence 88877 76 898 6789999999999999999 8999
Q ss_pred ccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCC
Q psy8076 536 TLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTK 615 (737)
Q Consensus 536 gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~ 615 (737)
||+++++.+...+ . +|||+|||+++++++|+++++||.||+||++|.+|+|.|||++|.+||.|.+++|++++++..
T Consensus 416 gY~~~~~~~~~~~-~--~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ 492 (563)
T PRK06710 416 GYWNKPEETAAVL-Q--DGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYR 492 (563)
T ss_pred hhhCChHHHhhhc-c--cCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCc
Confidence 9999998887654 2 789999999999999999999999999999999999999999999999999999999999888
Q ss_pred CcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceee
Q psy8076 616 GEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAF 695 (737)
Q Consensus 616 ~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p 695 (737)
++.++++++..++ . ....++++++++++++.+++|
T Consensus 493 g~~~~~~v~~~~~------------~---------------------------------~~~~~~l~~~~~~~l~~~~~P 527 (563)
T PRK06710 493 GETVKAFVVLKEG------------T---------------------------------ECSEEELNQFARKYLAAYKVP 527 (563)
T ss_pred CceeEEEEEECCC------------C---------------------------------CCCHHHHHHHHHHhcccccCC
Confidence 8889999987765 1 012467999999999999999
Q ss_pred eeEEEcCCCCCCCCchhhHHHHHHHHcCCC
Q psy8076 696 KLSTSVTGLPRTRSGKTARKSIVDMARNKP 725 (737)
Q Consensus 696 ~~~~~v~~lP~t~sGKi~R~~l~~~~~~~~ 725 (737)
..++++++||+|++||++|+.|++++..+.
T Consensus 528 ~~~~~v~~iP~t~~GKi~r~~L~~~~~~~~ 557 (563)
T PRK06710 528 KVYEFRDELPKTTVGKILRRVLIEEEKRKN 557 (563)
T ss_pred cEEEEcccCCCCccchhhHHHHHHHHhhcC
Confidence 999999999999999999999999887653
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-63 Score=563.09 Aligned_cols=510 Identities=20% Similarity=0.265 Sum_probs=408.9
Q ss_pred hhHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHH
Q psy8076 76 INACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATV 155 (737)
Q Consensus 76 ~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~ 155 (737)
.+++.++|+++++.. |+++|+++.+ +.+||.||.++++++|++|.+.|+++|++|+++++|++++++++|||+
T Consensus 20 ~~~~~~~~~~~~~~~-p~~~a~~~~~------~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~ 92 (541)
T TIGR03205 20 RGTLPDLLSKAAADY-GPRPALEFRD------RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGAL 92 (541)
T ss_pred CCCHHHHHHHHHHHc-CCCceEEECC------cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHH
Confidence 336789999999888 9999999875 899999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccc-----
Q psy8076 156 RLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAE----- 230 (737)
Q Consensus 156 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~----- 230 (737)
++|++++|++|.++.+++.+++++++++++++++.. .....+.++... . ....+++..........
T Consensus 93 ~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~-------~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~ 163 (541)
T TIGR03205 93 KAGARVVHLSPLDGERALSHKLSDSGARLLITSDLA-------ALLPMALKFLEK-G-LLDRLIVCEDDNWGKVGTPQAP 163 (541)
T ss_pred hcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCch-------hhhHHHHHhhhc-c-cceEEEEecccccccccccccc
Confidence 999999999999999999999999999999997531 011111121111 1 22344444322110000
Q ss_pred -cCCCCcccHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhh----
Q psy8076 231 -LTPGYDILWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSV---- 304 (737)
Q Consensus 231 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~---- 304 (737)
........+.+....... .......++++++++||||||| .||||+++|+++...... ...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG------------~PK~v~~s~~~l~~~~~~-~~~~~~~ 230 (541)
T TIGR03205 164 IPADPRIVTYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTG------------LPKGAMLTHGNLTSAVSI-YDVWGKP 230 (541)
T ss_pred cCCCcccccHHHHHhcCCCCCCCCCCCccCeEEEEECCCCCC------------CCcEEEEeHHHHHHHHHH-HHhhccc
Confidence 011123445555443221 1223456789999999999999 999999999886544332 111
Q ss_pred -hhcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCC
Q psy8076 305 -IYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDK 383 (737)
Q Consensus 305 -~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~ 383 (737)
.+.....+++++..|++|..++...++.++..|+++++.+ ..++..+++.|+++++|++.++|+++..|.+...
T Consensus 231 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~-----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 305 (541)
T TIGR03205 231 SRATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQ-----RFDVAAVFRDIEEKRATVFPGVPTMWIALANDPS 305 (541)
T ss_pred ccccCCCCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecC-----CCCHHHHHHHHHHcCCeEeechHHHHHHHHhCcc
Confidence 1122345789999999999887777888999999988775 3689999999999999999999999999876432
Q ss_pred CCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCC
Q psy8076 384 DSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGK 463 (737)
Q Consensus 384 ~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~ 463 (737)
. ...+++++|.+++||+++++++.+++.+.++.++++.||+||++...+.... .....+ +++|.|++++.
T Consensus 306 ~----~~~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~---~~~~~~-~~~G~~~~~~~-- 375 (541)
T TIGR03205 306 L----EKRDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPP---EGPDKP-GSIGLMLPGIE-- 375 (541)
T ss_pred c----cccCccccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCC---CCCCCC-CCcceeccCce--
Confidence 2 2346789999999999999999999998889999999999999876654322 112233 67888888877
Q ss_pred cceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhh
Q psy8076 464 YVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQR 543 (737)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~ 543 (737)
++ +.++|+++++++.|+.|||+++|+ +++.||+++++.
T Consensus 376 ---~~------------------------------------v~~~d~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~ 413 (541)
T TIGR03205 376 ---LD------------------------------------VVSLDDPTKVLPPGEVGELRIRGP---NVTRGYWNRPEE 413 (541)
T ss_pred ---eE------------------------------------EEecCCCCccCCCCCeeEEEEecC---CccccccCChhh
Confidence 65 113467889999999999999999 999999999998
Q ss_pred hHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEE
Q psy8076 544 FMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLY 623 (737)
Q Consensus 544 ~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v 623 (737)
+.+.|. ++||+|||+++++.||+++|+||.||+||++|++|+|.|||+++.+|+.|.+++|++++++..++.+++++
T Consensus 414 ~~~~~~---~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v 490 (541)
T TIGR03205 414 SAEAFV---GDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFV 490 (541)
T ss_pred hHhhhc---cCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEE
Confidence 877663 68999999999999999999999999999999999999999999999999999999999887888899999
Q ss_pred EeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCC
Q psy8076 624 IKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTG 703 (737)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~ 703 (737)
+++++ .. ....++++++++++|+.|++|..++++++
T Consensus 491 ~~~~~------------~~--------------------------------~~~~~~l~~~~~~~l~~~~~P~~i~~~~~ 526 (541)
T TIGR03205 491 KLRPG------------AK--------------------------------PFSLDELRAFLAGKLGKHELPVAVEFVDE 526 (541)
T ss_pred EECCC------------CC--------------------------------cCCHHHHHHHHHhhcccccCCcEEEEecc
Confidence 88754 10 01246789999999999999999999999
Q ss_pred CCCCCCchhhHHHHH
Q psy8076 704 LPRTRSGKTARKSIV 718 (737)
Q Consensus 704 lP~t~sGKi~R~~l~ 718 (737)
||+|++||++|+.|+
T Consensus 527 iP~t~~gK~~r~~l~ 541 (541)
T TIGR03205 527 LPRTPVGKLSRHELR 541 (541)
T ss_pred CCCCcccceeHhhcC
Confidence 999999999999874
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-63 Score=567.80 Aligned_cols=506 Identities=21% Similarity=0.264 Sum_probs=406.3
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEecCCHHHHHHHHHHHH
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLA-AIGVSAGDRVLIYMPLIPEAIVSMLATVR 156 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~-~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~ 156 (737)
.+.++|.++++.+ |+++|+++.+ +.+||+||.++++++|+.|. +.|+++|++|+++++|++++++++|||++
T Consensus 26 ~~~~~l~~~~~~~-~~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 98 (560)
T PRK08751 26 TVAEVFATSVAKF-ADRPAYHSFG------KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLR 98 (560)
T ss_pred cHHHHHHHHHHhC-CCCceEEECC------ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 4678899999888 9999999875 89999999999999999997 68999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEeccccc---------
Q psy8076 157 LGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE--------- 227 (737)
Q Consensus 157 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~--------- 227 (737)
+|++++|++|.++.+++.+++++++++++++++.. ...+.+..... ....+++.......
T Consensus 99 ~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 167 (560)
T PRK08751 99 AGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNF---------GTTVQQVIADT--PVKQVITTGLGDMLGFPKAALVN 167 (560)
T ss_pred hCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchh---------HHHHHHHhhCC--CccEEEEechhhhcccccchhhh
Confidence 99999999999999999999999999999998752 22233322222 12333332110000
Q ss_pred ---------ccccCCCCcccHHHHHhhcCC--CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHH
Q psy8076 228 ---------EAELTPGYDILWDDALAQRLS--HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIA 296 (737)
Q Consensus 228 ---------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~ 296 (737)
...........+.+....... .......++++++++||||||| .||||+++|.+++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG------------~PK~v~~s~~~l~~ 235 (560)
T PRK08751 168 FVVKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTG------------VAKGAMLTHRNLVA 235 (560)
T ss_pred hhhhhhhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCC------------CCCEEEEccHHHHH
Confidence 000001122334443332211 1223356789999999999999 99999999988766
Q ss_pred HHHHHHhhhhc----CCCC-cEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeec
Q psy8076 297 TLAWTMSVIYN----MGQD-DVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTA 371 (737)
Q Consensus 297 ~~~~~~~~~~~----~~~~-d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~ 371 (737)
...+.. ..++ +..+ ++++...|++|..++....+.++..|+++++... ..++..+++.++++++|++..+
T Consensus 236 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~ 310 (560)
T PRK08751 236 NMQQAH-QWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISN----PRDMPGFVKELKKTRFTAFTGV 310 (560)
T ss_pred HHHHHH-HhhccccccCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecC----cCCHHHHHHHHHhcceeEecCh
Confidence 555432 2232 3333 5778889999998876656777888888877653 2578999999999999999999
Q ss_pred HHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCC
Q psy8076 372 PTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKY 451 (737)
Q Consensus 372 P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~ 451 (737)
|+++..+.+.... ...++++||.+++||+++++.+.+.|.+.++..+++.||+||+++.++.... .....+ +
T Consensus 311 p~~~~~l~~~~~~----~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~---~~~~~~-~ 382 (560)
T PRK08751 311 NTLFNGLLNTPGF----DQIDFSSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAACINPL---TLKEYN-G 382 (560)
T ss_pred HHHHHHHHcCcCc----CCcchhhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccCCCceecccc---cccccC-C
Confidence 9999999875432 3456789999999999999999999999889999999999999876544322 111223 5
Q ss_pred ccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCC
Q psy8076 452 STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPP 531 (737)
Q Consensus 452 ~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~ 531 (737)
++|.|++++. ++ |+|++|++++.|+.|||+|+|+
T Consensus 383 ~vG~~~~~~~-----v~--------------------------------------i~d~~~~~~~~g~~Gel~v~~~--- 416 (560)
T PRK08751 383 SIGLPIPSTD-----AC--------------------------------------IKDDAGTVLAIGEIGELCIKGP--- 416 (560)
T ss_pred CcCccCCCce-----EE--------------------------------------EECCCCCCCCCCCceEEEEecC---
Confidence 7888888877 77 9999999999999999999999
Q ss_pred CcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEeccc
Q psy8076 532 GTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVP 611 (737)
Q Consensus 532 ~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~ 611 (737)
.++.||+++++.+.+.+. .+|||+|||+|+++++|++++.||.||+||++|++|+|.|||++|.+||+|.+++|++++
T Consensus 417 ~~~~gy~~~~~~~~~~~~--~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~ 494 (560)
T PRK08751 417 QVMKGYWKRPEETAKVMD--ADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVP 494 (560)
T ss_pred ccchhhcCChhhhhhccc--cCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecC
Confidence 899999999998876652 378999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCC
Q psy8076 612 EPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGP 691 (737)
Q Consensus 612 ~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 691 (737)
++..++.++++++.... ....++++++++++++.
T Consensus 495 ~~~~ge~~~~~v~~~~~----------------------------------------------~~~~~~l~~~~~~~l~~ 528 (560)
T PRK08751 495 DEKSGEIVKVVIVKKDP----------------------------------------------ALTAEDVKAHARANLTG 528 (560)
T ss_pred CCCCCceEEEEEEcCCC----------------------------------------------CCCHHHHHHHHHHhhhh
Confidence 88788878887775432 01245788899999999
Q ss_pred ceeeeeEEEcCCCCCCCCchhhHHHHHHH
Q psy8076 692 IAAFKLSTSVTGLPRTRSGKTARKSIVDM 720 (737)
Q Consensus 692 ~~~p~~~~~v~~lP~t~sGKi~R~~l~~~ 720 (737)
+++|..++++++||+|++||++|+.|++.
T Consensus 529 ~~~P~~v~~v~~lP~t~~gKv~r~~L~~~ 557 (560)
T PRK08751 529 YKQPRIIEFRKELPKTNVGKILRRELRDA 557 (560)
T ss_pred ccCCeEEEEhhhCCCCccccccHHHHHHh
Confidence 99999999999999999999999999987
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-63 Score=570.21 Aligned_cols=508 Identities=19% Similarity=0.202 Sum_probs=395.7
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|.++++++ |+++|+++.+ +.+||+||+++++++|+.|.+.|+++|++|+++++|+.++++++|||+++
T Consensus 38 tl~~~l~~~a~~~-p~~~Ai~~~~------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~ 110 (600)
T PRK08279 38 SLGDVFEEAAARH-PDRPALLFED------QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKL 110 (600)
T ss_pred cHHHHHHHHHHhC-CCCcEEEeCC------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 5789999999888 9999999876 89999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|+++.++.+++.+++++++++++|+++.. ...+.+...... ....+++.... .. ....
T Consensus 111 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~-~~------~~~~ 173 (600)
T PRK08279 111 GAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEEL---------VEAFEEARADLA-RPPRLWVAGGD-TL------DDPE 173 (600)
T ss_pred CcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHH---------HHHHHHHhhhhc-ccceEEEecCc-cc------cccc
Confidence 9999999999999999999999999999998742 223333322222 11222222111 00 0011
Q ss_pred cHHHHHhhcCC------CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCC
Q psy8076 238 LWDDALAQRLS------HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQD 311 (737)
Q Consensus 238 ~~~~~~~~~~~------~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~ 311 (737)
.+.++...... .......++++++++||||||| .||||+++|++++.+..+ +...++++++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG------------~PKgV~~sh~~l~~~~~~-~~~~~~l~~~ 240 (600)
T PRK08279 174 GYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTG------------LPKAAVMSHMRWLKAMGG-FGGLLRLTPD 240 (600)
T ss_pred cHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCC------------CCcEEEEeHHHHHHHHHH-HHHhcCCCCC
Confidence 23333221111 1123356789999999999999 999999999987766655 4455899999
Q ss_pred cEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCC
Q psy8076 312 DVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQY 391 (737)
Q Consensus 312 d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~ 391 (737)
|++++.+|++|.+++...++.+|..|+++++.+ .+++..+++.++++++|++.++|++++.+...... ...
T Consensus 241 d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~-----~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~----~~~ 311 (600)
T PRK08279 241 DVLYCCLPLYHNTGGTVAWSSVLAAGATLALRR-----KFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPK----PTD 311 (600)
T ss_pred cEEEEecCchhhhhHHHHHHHHHhcCcEEEEcC-----CCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCC----ccc
Confidence 999999999999998777777888999998865 36889999999999999999999999998876433 222
Q ss_pred CCCCccEEEeecCCCCHHHHHHHHHhcCC-cccccccccccccccccccccCCCCCCCCCCccCCCcC----CCCCCcce
Q psy8076 392 STDSLRYLFVAGEHCDHETKNWAEKSFNV-TMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFP----GYDGKYVN 466 (737)
Q Consensus 392 ~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~-~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~----g~~~~~~~ 466 (737)
...++|.+ +|+.++++++++|.+.++. .+++.||+||++..++.. ...+ .++|.+.+ +..
T Consensus 312 ~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~-------~~~~-~~~g~~~~~~~~~~~----- 376 (600)
T PRK08279 312 RDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV-------FNFD-GTVGRVPLWLAHPYA----- 376 (600)
T ss_pred cCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc-------CCCC-cccccccccccccce-----
Confidence 34567754 4788999999999999885 599999999998533221 1122 45665544 221
Q ss_pred eeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCC--CccCCCcceEEE--EecCCCCCcccccccChh
Q psy8076 467 IVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDG--SECEPHELGRIV--VKLPLPPGTMSTLYKAPQ 542 (737)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g--~~~~~g~~GEL~--i~g~~~~~~~~gy~~~~~ 542 (737)
+..+ -......|.+.++ .++++|+.|||+ |+|+ +++.|| ++++
T Consensus 377 ~~~~-----------------------------~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~---~~~~GY-~~~~ 423 (600)
T PRK08279 377 IVKY-----------------------------DVDTGEPVRDADGRCIKVKPGEVGLLIGRITDR---GPFDGY-TDPE 423 (600)
T ss_pred eeee-----------------------------ccCcCceeeCCCCccccCCCCCceeEEEEecCc---cccccc-CCch
Confidence 1100 0011112555444 467889999998 6787 899999 8888
Q ss_pred hhHHhhcc----CCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCC-CCc
Q psy8076 543 RFMKIYFT----KFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPT-KGE 617 (737)
Q Consensus 543 ~~~~~~~~----~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~-~~~ 617 (737)
.+.+.++. +.++||+|||+|++++||++++.||.||+||++|+||+|.|||++|.+||+|.+|+|++++++. .++
T Consensus 424 ~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~ 503 (600)
T PRK08279 424 ASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGR 503 (600)
T ss_pred hhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCc
Confidence 77776643 3468999999999999999999999999999999999999999999999999999999998764 345
Q ss_pred ceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeee
Q psy8076 618 IPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKL 697 (737)
Q Consensus 618 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 697 (737)
..+++++..++ . ....++++++++++|+.|++|..
T Consensus 504 ~~~~~vv~~~~------------~---------------------------------~~~~~~l~~~l~~~L~~~~~P~~ 538 (600)
T PRK08279 504 AGMAAIVLADG------------A---------------------------------EFDLAALAAHLYERLPAYAVPLF 538 (600)
T ss_pred cceeEEEecCC------------c---------------------------------cCCHHHHHHHHHhhCccccCCeE
Confidence 56666666533 0 01246899999999999999999
Q ss_pred EEEcCCCCCCCCchhhHHHHHHHHcCC
Q psy8076 698 STSVTGLPRTRSGKTARKSIVDMARNK 724 (737)
Q Consensus 698 ~~~v~~lP~t~sGKi~R~~l~~~~~~~ 724 (737)
++++++||+|++||++|+.|++++.+.
T Consensus 539 i~~v~~lP~t~~GKi~r~~L~~~~~~~ 565 (600)
T PRK08279 539 VRLVPELETTGTFKYRKVDLRKEGFDP 565 (600)
T ss_pred EEeecCCCCCcchhhhHHHHhhcCCCc
Confidence 999999999999999999999987765
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-63 Score=560.43 Aligned_cols=486 Identities=20% Similarity=0.257 Sum_probs=395.6
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEecCCHHHHHHHHHHHH
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAI-GVSAGDRVLIYMPLIPEAIVSMLATVR 156 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~-Gv~~Gd~V~i~~~~~~e~vva~lA~~~ 156 (737)
.+.++|++++ . ++++|+++.+ +.+||.||+++++++|++|.++ |+++|++|+++++|+++++++++||++
T Consensus 6 ~~~~~l~~~a--~-~~~~a~~~~~------~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~ 76 (529)
T PRK07867 6 TVAELLLPLA--E-DDDRGLYFED------SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAAL 76 (529)
T ss_pred cHHHHHHHhc--c-cCCceEEECC------cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 3667787776 3 7899999875 8999999999999999999997 899999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCc
Q psy8076 157 LGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYD 236 (737)
Q Consensus 157 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~ 236 (737)
+|++++|+++.++.+++.+++++++++++++++... ..+.. ..... .++.+. .
T Consensus 77 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~~~~~----~~~~~-~~~~~~-------------~ 129 (529)
T PRK07867 77 SGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHA---------ELLDG----LDPGV-RVINVD-------------S 129 (529)
T ss_pred cCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHH---------HHHHh----hccCc-eEEEec-------------c
Confidence 999999999999999999999999999999987532 11111 11111 111111 1
Q ss_pred ccHHHHHhhcCC--CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEE
Q psy8076 237 ILWDDALAQRLS--HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVW 314 (737)
Q Consensus 237 ~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~ 314 (737)
..+.+.+..... .......++++++++||||||| .||||+++|+++..+... +...++++.+|++
T Consensus 130 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG------------~PKgv~~s~~~l~~~~~~-~~~~~~~~~~d~~ 196 (529)
T PRK07867 130 PAWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSG------------DPKAVRCTHRKVASAGVM-LAQRFGLGPDDVC 196 (529)
T ss_pred ccHHHHhcccCCCCCCcccCCccceEEEEECCCCCC------------CCcEEEecHHHHHHHHHH-HHHhhCCCcccEE
Confidence 123333322111 1223457799999999999999 999999999886655443 5666889999999
Q ss_pred EEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCC
Q psy8076 315 WTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTD 394 (737)
Q Consensus 315 l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~ 394 (737)
+..+|++|..++...++.++..|+++++.+. .++..+++.++++++|++.++|+.+..+...... .....+
T Consensus 197 l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~-----~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~----~~~~~~ 267 (529)
T PRK07867 197 YVSMPLFHSNAVMAGWAVALAAGASIALRRK-----FSASGFLPDVRRYGATYANYVGKPLSYVLATPER----PDDADN 267 (529)
T ss_pred EEecchhHHHHHHHHHHHHHhcCceEEecCC-----CCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCc----cccccc
Confidence 9999999999987777788999999998763 6899999999999999999999999988765432 112235
Q ss_pred CccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeecccc
Q psy8076 395 SLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLD 474 (737)
Q Consensus 395 ~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~ 474 (737)
++|. ++||+.+++.. .+|.+.+|.++++.||+||+++.++.. ...++ .++|.|++++.
T Consensus 268 ~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~------~~~~~-~~~g~~~~~~~------------- 325 (529)
T PRK07867 268 PLRI-VYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRT------PDTPP-GALGPLPPGVA------------- 325 (529)
T ss_pred ceEE-EecCCCChHHH-HHHHHHhCCcEEEeecccccccccccC------CCCCC-CCcCCCCCCEE-------------
Confidence 7884 56888887764 667778899999999999998654421 11233 67888888744
Q ss_pred CccccccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCc------------ceEEEE-ecCCCCCcccccccC
Q psy8076 475 GRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHE------------LGRIVV-KLPLPPGTMSTLYKA 540 (737)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~------------~GEL~i-~g~~~~~~~~gy~~~ 540 (737)
|+| +++.+++.|+ .|||++ +|| +++.||+++
T Consensus 326 --------------------------------i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~---~~~~gy~~~ 370 (529)
T PRK07867 326 --------------------------------IVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGP---GGFEGYYND 370 (529)
T ss_pred --------------------------------EEECCCCCCCCCCccccccccccCCcceEEEEecCC---cccccccCC
Confidence 777 4677888887 999999 998 999999999
Q ss_pred hhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceE
Q psy8076 541 PQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPF 620 (737)
Q Consensus 541 ~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~ 620 (737)
++.+.+.+ . +|||+|||+|+++++|+++|+||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++.++
T Consensus 371 ~~~~~~~~-~--~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~ 447 (529)
T PRK07867 371 PEADAERM-R--GGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVM 447 (529)
T ss_pred hHhhhhhh-c--CCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEE
Confidence 99887765 2 78999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHh--cCCceeeeeE
Q psy8076 621 CLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREA--IGPIAAFKLS 698 (737)
Q Consensus 621 a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--l~~~~~p~~~ 698 (737)
+++++.++ . ....++++++++++ |+.+++|..+
T Consensus 448 a~vv~~~~------------~---------------------------------~~~~~~l~~~~~~~~~l~~~~~P~~i 482 (529)
T PRK07867 448 AALVLAPG------------A---------------------------------KFDPDAFAEFLAAQPDLGPKQWPSYV 482 (529)
T ss_pred EEEEECCC------------C---------------------------------CCCHHHHHHHHHhhccCCcccCCeEE
Confidence 99998765 1 01245677777765 9999999999
Q ss_pred EEcCCCCCCCCchhhHHHHHHHHcCCCC
Q psy8076 699 TSVTGLPRTRSGKTARKSIVDMARNKPL 726 (737)
Q Consensus 699 ~~v~~lP~t~sGKi~R~~l~~~~~~~~~ 726 (737)
+++++||+|++||++|+.|+++......
T Consensus 483 ~~~~~iP~t~~GKv~r~~L~~~~~~~~~ 510 (529)
T PRK07867 483 RVCAELPRTATFKVLKRQLSAEGVDCAD 510 (529)
T ss_pred EEeeccCCCCCcceeHHHHHHhcCCCCC
Confidence 9999999999999999999999876543
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-62 Score=562.94 Aligned_cols=511 Identities=22% Similarity=0.239 Sum_probs=403.0
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
.+.++|+++++.+ |+++|++..+ +.+||+||++++.++|+.|.+.|+++||+|+++++|+.++++++|||+++
T Consensus 11 ~l~~~l~~~a~~~-p~~~a~~~~~------~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~ 83 (540)
T PRK06164 11 TLASLLDAHARAR-PDAVALIDED------RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARL 83 (540)
T ss_pred CHHHHHHHHHHhC-CCCeEEecCC------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHh
Confidence 4788999999888 9999999654 89999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|+++..+.+++.++++++++++++++++... +++...+...........+.++++...... .......
T Consensus 84 G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 156 (540)
T PRK06164 84 GATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKG----IDFAAILAAVPPDALPPLRAIAVVDDAADA---TPAPAPG 156 (540)
T ss_pred CcEEEecCCCCCcHHHHHHHHhcCccEEEEcccccc----ccHHHHhhcccccccCCcceEEEeccCccc---CCCCCcc
Confidence 999999999999999999999999999999865321 122222222211111133445544321000 0000001
Q ss_pred cHHHHHhhcCC-----CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCc
Q psy8076 238 LWDDALAQRLS-----HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDD 312 (737)
Q Consensus 238 ~~~~~~~~~~~-----~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d 312 (737)
.+.+....... .......++++++++||||||| .||||+++|++++.... .+...+++..++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG------------~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~ 223 (540)
T PRK06164 157 ARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTS------------GPKLVLHRQATLLRHAR-AIARAYGYDPGA 223 (540)
T ss_pred cccccccccccCCcccccccCCCCCceEEEEECCCCCC------------CCcEEEEehHHHHHHHH-HHHHhcCCCCCC
Confidence 11111111100 0112235688999999999999 99999999988665544 356668899999
Q ss_pred EEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCC
Q psy8076 313 VWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYS 392 (737)
Q Consensus 313 ~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~ 392 (737)
++++.+|++|.+|+. .++.++..|+++++.+ .+++..+++.|+++++|+++++|+++..|.+... ...+
T Consensus 224 ~~l~~~p~~~~~g~~-~~~~~l~~G~~~~~~~-----~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~-----~~~~ 292 (540)
T PRK06164 224 VLLAALPFCGVFGFS-TLLGALAGGAPLVCEP-----VFDAARTARALRRHRVTHTFGNDEMLRRILDTAG-----ERAD 292 (540)
T ss_pred EEEEcCCchhHHHHH-HHHHHHhcCceEEecC-----CCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhc-----ccCC
Confidence 999999999999974 5899999999999875 3689999999999999999999999999988622 3457
Q ss_pred CCCccEEEeec-CCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCc-CCCCCCcceeeee
Q psy8076 393 TDSLRYLFVAG-EHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPF-PGYDGKYVNIVML 470 (737)
Q Consensus 393 l~~Lr~i~~gG-e~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~-~g~~~~~~~~~~~ 470 (737)
++++|.+.++| .+...++.+++.+. +.++++.||+||++..++...... ...... ...|.|+ +++. ++
T Consensus 293 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~-~~~~~~-~~~g~~~~~~~~-----~~-- 362 (540)
T PRK06164 293 FPSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQPATD-PVSVRI-EGGGRPASPEAR-----VR-- 362 (540)
T ss_pred CcceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccCCCC-CCccee-ccCccccCCCeE-----EE--
Confidence 88999887776 45566677777765 889999999999987655433211 111111 3445553 4444 44
Q ss_pred ccccCccccccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhc
Q psy8076 471 NWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYF 549 (737)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~ 549 (737)
|+| +++++++.|+.|||||+|+ +++.||+++++.+.+.+.
T Consensus 363 ------------------------------------i~d~~~~~~~~~g~~Gel~v~g~---~~~~gY~~~~~~t~~~~~ 403 (540)
T PRK06164 363 ------------------------------------ARDPQDGALLPDGESGEIEIRAP---SLMRGYLDNPDATARALT 403 (540)
T ss_pred ------------------------------------EecCCCCcCCCCCCeeEEEEecc---cccccccCCchhhhhccc
Confidence 999 5789999999999999999 999999999999887764
Q ss_pred cCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCC
Q psy8076 550 TKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIP 629 (737)
Q Consensus 550 ~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~ 629 (737)
. +|||+|||+|++++||++++.||.||+||++|++|+|.|||++|.+||+|.+++|++++. .+++.++++++++++
T Consensus 404 ~--~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~-~~~~~~~~~vv~~~~- 479 (540)
T PRK06164 404 D--DGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATR-DGKTVPVAFVIPTDG- 479 (540)
T ss_pred C--CCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCC-CCceeEEEEEEeCCC-
Confidence 3 789999999999999999999999999999999999999999999999999999999884 356778899988654
Q ss_pred CCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCC
Q psy8076 630 LDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRS 709 (737)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~s 709 (737)
. ....++++++++++|+.+++|..+++++++|+|++
T Consensus 480 -----------~---------------------------------~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~ 515 (540)
T PRK06164 480 -----------A---------------------------------SPDEAGLMAACREALAGFKVPARVQVVEAFPVTES 515 (540)
T ss_pred -----------C---------------------------------CCCHHHHHHHHHhhcccCcCCcEEEEecCCCCCCC
Confidence 1 01256889999999999999999999999999999
Q ss_pred c---hhhHHHHHHHHcC
Q psy8076 710 G---KTARKSIVDMARN 723 (737)
Q Consensus 710 G---Ki~R~~l~~~~~~ 723 (737)
| |++|+.|++++..
T Consensus 516 g~~~Ki~r~~L~~~~~~ 532 (540)
T PRK06164 516 ANGAKIQKHRLREMAQA 532 (540)
T ss_pred CccccccHHHHHHHHHH
Confidence 9 9999999998764
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-62 Score=554.70 Aligned_cols=495 Identities=21% Similarity=0.270 Sum_probs=408.9
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcC
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 158 (737)
+.++|++++... |+++|+...+ +.+||+||.++++++|..|.+.|+++|++|+++++|+.++++++|||+++|
T Consensus 4 ~~~~l~~~a~~~-p~~~~~~~~~------~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G 76 (503)
T PRK04813 4 IIETIEEFAQTQ-PDFPAYDYLG------EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAG 76 (503)
T ss_pred HHHHHHHHHHhC-CCceEEEeCC------cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 568888889887 9999999875 789999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCccc
Q psy8076 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL 238 (737)
Q Consensus 159 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~ 238 (737)
++++|+++.++.+++..+++.++++++++++.... ....+..+... .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~-------------~ 123 (503)
T PRK04813 77 HAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPL--------------------EILGIPVITLD-------------E 123 (503)
T ss_pred CEEecCCCCChHHHHHHHHHhcCCCEEEecccccc--------------------cccCCcEEehH-------------H
Confidence 99999999999999999999999999999875310 00000000000 0
Q ss_pred HHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEe
Q psy8076 239 WDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317 (737)
Q Consensus 239 ~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~ 317 (737)
+.+....... .......++++++++||||||| .||+|.++|+++.....+. ...+++..+++++..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG------------~PK~v~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~ 190 (503)
T PRK04813 124 LKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTG------------KPKGVQISHDNLVSFTNWM-LEDFALPEGPQFLNQ 190 (503)
T ss_pred hhhhhhccccccccccCCCCCcEEEEECCCCCC------------CCcEEEeehHHHHHHHHHH-HHHcCCCcCceeeec
Confidence 0111000111 1123456789999999999999 9999999998877666553 455888999999999
Q ss_pred cccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCcc
Q psy8076 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLR 397 (737)
Q Consensus 318 ~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr 397 (737)
.|++|..+. +.++.+|..|+++++.+... ..++..+++.++++++|++.++|++++.+...... ...+++++|
T Consensus 191 ~p~~~~~~~-~~~~~~l~~g~~~v~~~~~~--~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~----~~~~~~~l~ 263 (503)
T PRK04813 191 APYSFDLSV-MDLYPTLASGGTLVALPKDM--TANFKQLFETLPQLPINVWVSTPSFADMCLLDPSF----NEEHLPNLT 263 (503)
T ss_pred CCcchhHhH-HHHHHHHhcCCEEEEcChhh--hcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhcc----CcccCCCce
Confidence 999999885 45788999999999987533 36899999999999999999999999887654322 334678999
Q ss_pred EEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCC-CCCCCCCCccCCCcCCCCCCcceeeeeccccC
Q psy8076 398 YLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQ-HDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDG 475 (737)
Q Consensus 398 ~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~-~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~ 475 (737)
.++++|+++++.+.+++.+.+ +..+++.||+||++..++....... ...... .++|.|.++++ ++
T Consensus 264 ~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~-----~~------- 330 (503)
T PRK04813 264 HFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKR-LPIGYAKPDSP-----LL------- 330 (503)
T ss_pred EEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccCCC-CcccccCCCCE-----EE-------
Confidence 999999999999999999988 6789999999999865554322111 112222 56777877777 66
Q ss_pred ccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccC-CCC
Q psy8076 476 RAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTK-FPG 554 (737)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~-~~g 554 (737)
|+|++|.+++.|+.|||+++|+ +++.||+++++.+...|+.. ..+
T Consensus 331 -------------------------------i~d~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~~~~~~g~~ 376 (503)
T PRK04813 331 -------------------------------IIDEEGTKLPDGEQGEIVISGP---SVSKGYLNNPEKTAEAFFTFDGQP 376 (503)
T ss_pred -------------------------------EECCCCCCCCCCCceEEEEecc---ccccccCCChhHhHHhhccCCCce
Confidence 9999999999999999999999 99999999999998887653 335
Q ss_pred eeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCC
Q psy8076 555 YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMG 634 (737)
Q Consensus 555 ~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~ 634 (737)
||+|||+|++ .+|++++.||.||+||++|++|++.+||+.+.++|+|.+++|++.+++..++.+++++++.+..
T Consensus 377 ~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~----- 450 (503)
T PRK04813 377 AYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEED----- 450 (503)
T ss_pred eEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEecccc-----
Confidence 9999999999 9999999999999999999999999999999999999999999987776778899999876530
Q ss_pred ccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhH
Q psy8076 635 FSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTAR 714 (737)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R 714 (737)
. .....+.++++++++++++.+++|..++++++||+|++||++|
T Consensus 451 ------~------------------------------~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r 494 (503)
T PRK04813 451 ------F------------------------------EREFELTKAIKKELKERLMEYMIPRKFIYRDSLPLTPNGKIDR 494 (503)
T ss_pred ------c------------------------------cccchhHHHHHHHHHhhCccccCCeEEEEeccCCCCCCCCCcH
Confidence 0 1123466789999999999999999999999999999999999
Q ss_pred HHHHHHHc
Q psy8076 715 KSIVDMAR 722 (737)
Q Consensus 715 ~~l~~~~~ 722 (737)
++|++.+.
T Consensus 495 ~~l~~~~~ 502 (503)
T PRK04813 495 KALIEEVN 502 (503)
T ss_pred HHHHHHhc
Confidence 99999875
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-63 Score=613.12 Aligned_cols=508 Identities=22% Similarity=0.253 Sum_probs=407.1
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++++++++++ |+++|+++.. .+++||+||+++++++|+.|.+ ++++||+|+++++|++++++++|||+++
T Consensus 616 ~l~~~~~~~a~~~-p~~~a~~~~~-----~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~ 688 (1146)
T PRK08633 616 PLAEAWIDTAKRN-WSRLAVADST-----GGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLA 688 (1146)
T ss_pred CHHHHHHHHHHhc-CCCcEEEcCC-----CCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHc
Confidence 4678888888888 9999998642 2689999999999999999987 4899999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHH--HHhcCCCCCeEEEEecccccccccCCCC
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEA--LEISSCKPDYCIIFQRRCVEEAELTPGY 235 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~viv~~~~~~~~~~~~~~~ 235 (737)
|++++|++|..+.+++.+++++++++++++++.... .+.+. ....+ ...+++....... .. ..
T Consensus 689 G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~---~~--~~ 753 (1146)
T PRK08633 689 GKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLE---------KLKNKGFDLELP-ENVKVIYLEDLKA---KI--SK 753 (1146)
T ss_pred CCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHH---------HHhccCCchhcc-cCceEEEeehhcc---cc--ch
Confidence 999999999999999999999999999999864221 11110 00111 1223333322100 00 00
Q ss_pred cccHHHHHhhcC-C------CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcC
Q psy8076 236 DILWDDALAQRL-S------HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNM 308 (737)
Q Consensus 236 ~~~~~~~~~~~~-~------~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~ 308 (737)
...+.+...... + ....+..++++++++||||||| .||||+++|++++.+... ....+++
T Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PKgv~~s~~~~~~~~~~-~~~~~~~ 820 (1146)
T PRK08633 754 VDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEG------------EPKGVMLSHHNILSNIEQ-ISDVFNL 820 (1146)
T ss_pred hHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCC------------CCceEEechHHHHHHHHH-HHHhcCC
Confidence 001111111100 0 0013456799999999999999 999999999887666554 5566888
Q ss_pred CCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccc
Q psy8076 309 GQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLG 388 (737)
Q Consensus 309 ~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~ 388 (737)
.++|++++.+|++|..++...++.++..|+++++.+. ..++..+++.++++++|++.++|++++.+.+....
T Consensus 821 ~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---- 892 (1146)
T PRK08633 821 RNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPD----PTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKL---- 892 (1146)
T ss_pred CCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCC----CCCHHHHHHHHHHcCCeEEEecHHHHHHHHhcccc----
Confidence 9999999999999999987778899999999998764 36889999999999999999999999998875432
Q ss_pred cCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCC------CCCCCCCCccCCCcCCCCC
Q psy8076 389 AQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQ------HDTVPPKYSTGLPFPGYDG 462 (737)
Q Consensus 389 ~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~p~~g~~~ 462 (737)
...+++++|.+++|||++++++.+++.+.+|.++++.||+||+++.++....... ....++ +++|+|+||++
T Consensus 893 ~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~-~~vG~p~~~~~- 970 (1146)
T PRK08633 893 HPLMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKE-GSVGMPLPGVA- 970 (1146)
T ss_pred CcccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEecCcccccccccccCCCC-CCccccCCCCE-
Confidence 3456889999999999999999999999999999999999999876654322110 001223 56777777776
Q ss_pred CcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccCh
Q psy8076 463 KYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAP 541 (737)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~ 541 (737)
++ |+| ++++++|+|+.|||+++|| +++.||++++
T Consensus 971 ----v~--------------------------------------i~d~~~~~~~~~g~~Gel~v~g~---~~~~gY~~~~ 1005 (1146)
T PRK08633 971 ----VR--------------------------------------IVDPETFEELPPGEDGLILIGGP---QVMKGYLGDP 1005 (1146)
T ss_pred ----EE--------------------------------------EEcCCCCccCCCCCceEEEEcCC---CccccccCCc
Confidence 66 999 5689999999999999999 9999999999
Q ss_pred hhhHHhhcc-CCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCC--CcceeEEecccCCCCCcc
Q psy8076 542 QRFMKIYFT-KFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHP--DVGDTAVIGVPEPTKGEI 618 (737)
Q Consensus 542 ~~~~~~~~~-~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p--~V~~a~vv~~~~~~~~~~ 618 (737)
+.+.+.+.. +.+|||+|||+|++|+||++++.||.||+||++|++|+|.|||++|.+|| .+.+++|++++++..++.
T Consensus 1006 ~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~ 1085 (1146)
T PRK08633 1006 EKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEK 1085 (1146)
T ss_pred cchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcE
Confidence 988776532 12389999999999999999999999999999999999999999999998 567899999999988999
Q ss_pred eEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHH-hcCCceeeee
Q psy8076 619 PFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVRE-AIGPIAAFKL 697 (737)
Q Consensus 619 ~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~ 697 (737)
++++++.... ..+++++++++ .++.|++|..
T Consensus 1086 ~~~~v~~~~~------------------------------------------------~~~~l~~~~~~~~l~~~~~P~~ 1117 (1146)
T PRK08633 1086 LVVLHTCGAE------------------------------------------------DVEELKRAIKESGLPNLWKPSR 1117 (1146)
T ss_pred EEEEEecCcc------------------------------------------------CHHHHHHHHHhcCCCcccCCcE
Confidence 9998876221 13567777765 6999999999
Q ss_pred EEEcCCCCCCCCchhhHHHHHHHHcC
Q psy8076 698 STSVTGLPRTRSGKTARKSIVDMARN 723 (737)
Q Consensus 698 ~~~v~~lP~t~sGKi~R~~l~~~~~~ 723 (737)
+++++++|+|++||+||++|+++..+
T Consensus 1118 i~~~~~iP~t~~GKi~r~~L~~~~~~ 1143 (1146)
T PRK08633 1118 YFKVEALPLLGSGKLDLKGLKELALA 1143 (1146)
T ss_pred EEEecCcCCCCCCCCcHHHHHHHHHH
Confidence 99999999999999999999987543
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-62 Score=557.25 Aligned_cols=477 Identities=22% Similarity=0.255 Sum_probs=391.8
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcC
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 158 (737)
+...|.++++.+ |+++|+++.+ +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|
T Consensus 37 ~~~~~~~~a~~~-p~~~a~~~~~------~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G 109 (516)
T PRK13383 37 PYTLLAVTAARW-PGRTAIIDDD------GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLG 109 (516)
T ss_pred HHHHHHHHHHHC-CCCcEEEeCC------CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence 456677888887 9999998765 689999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCccc
Q psy8076 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL 238 (737)
Q Consensus 159 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~ 238 (737)
++++|+++.++.+++.+++++++++++++++... ..+.. . ...++.+... ..
T Consensus 110 ~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~----~---~~~~~~~~~~-----------~~- 161 (516)
T PRK13383 110 ADVVPISTEFRSDALAAALRAHHISTVVADNEFA---------ERIAG----A---DDAVAVIDPA-----------TA- 161 (516)
T ss_pred eEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHH---------HHHHh----h---hcceEEeccc-----------hh-
Confidence 9999999999999999999999999999986532 11111 1 1122222211 00
Q ss_pred HHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHH--HHHHhhhhcCCCCcEEEE
Q psy8076 239 WDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATL--AWTMSVIYNMGQDDVWWT 316 (737)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~--~~~~~~~~~~~~~d~~l~ 316 (737)
... . ....+...++.++++||||||| .||||+++|.. .... .......+++..+|+++.
T Consensus 162 --~~~--~--~~~~p~~~~~~~~il~TSGTTG------------~PK~v~~s~~~-~~~~~~~~~~~~~~~~~~~d~~~~ 222 (516)
T PRK13383 162 --GAE--E--SGGRPAVAAPGRIVLLTSGTTG------------KPKGVPRAPQL-RSAVGVWVTILDRTRLRTGSRISV 222 (516)
T ss_pred --hhh--c--CCCCCCCCCCCcEEEECCCCCC------------CCCeeeecchh-hhhhhhHHhHHhhhccCCCCeEEE
Confidence 000 0 0111223467789999999999 99999999963 2211 111233467889999999
Q ss_pred ecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCc
Q psy8076 317 ASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSL 396 (737)
Q Consensus 317 ~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~L 396 (737)
..|++|.+|+.. ++.++..|+++++.. ..++..+++.++++++|.+.++|++++.|........ ...+++++
T Consensus 223 ~~pl~h~~g~~~-~~~~l~~G~~~~~~~-----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~~~l 294 (516)
T PRK13383 223 AMPMFHGLGLGM-LMLTIALGGTVLTHR-----HFDAEAALAQASLHRADAFTAVPVVLARILELPPRVR--ARNPLPQL 294 (516)
T ss_pred ecCCcchhhHHH-HHHHHhcCCEEEECC-----CCCHHHHHHHHHHhCCcEEEecHHHHHHHHhcccccc--ccCCCCce
Confidence 999999999754 778899999998765 3689999999999999999999999999987543211 23357899
Q ss_pred cEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCc
Q psy8076 397 RYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGR 476 (737)
Q Consensus 397 r~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~ 476 (737)
|.+++||+++++++.++|.+.++..+++.||+||++....... ......+ .++|+|++|+. ++
T Consensus 295 r~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~---~~~~~~~-~~~G~~~~~~~-----~~-------- 357 (516)
T PRK13383 295 RVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATP---ADLRDAP-ETVGKPVAGCP-----VR-------- 357 (516)
T ss_pred EEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccc---cccccCC-CcccCCCCCcE-----EE--------
Confidence 9999999999999999999999999999999999986544322 1112233 67888888887 77
Q ss_pred cccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCee
Q psy8076 477 AHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYY 556 (737)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~ 556 (737)
|+|++|+++++|+.|||+++|+ .++.||++++... + .+|||
T Consensus 358 ------------------------------i~d~~~~~~~~g~~Gel~v~g~---~~~~~Y~~~~~~~----~--~~g~~ 398 (516)
T PRK13383 358 ------------------------------ILDRNNRPVGPRVTGRIFVGGE---LAGTRYTDGGGKA----V--VDGMT 398 (516)
T ss_pred ------------------------------EECCCCCCCCCCCceEEEEecC---cccccccCCchhh----e--ecCce
Confidence 9999999999999999999999 8999999876422 2 27999
Q ss_pred ecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCcc
Q psy8076 557 DTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFS 636 (737)
Q Consensus 557 ~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~ 636 (737)
+|||+|++|++|++++.||.||+||++|++|+|.|||++|.+||.|.++++++++++..++.++++|++.+.
T Consensus 399 ~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~-------- 470 (516)
T PRK13383 399 STGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPG-------- 470 (516)
T ss_pred ecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCC--------
Confidence 999999999999999999999999999999999999999999999999999999988888999999998754
Q ss_pred ccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHH
Q psy8076 637 GLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKS 716 (737)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~ 716 (737)
. . ...++++++++++++.++.|..++++++||+|++||++|+.
T Consensus 471 ----~-------------------------------~--~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gKi~r~~ 513 (516)
T PRK13383 471 ----S-------------------------------G--VDAAQLRDYLKDRVSRFEQPRDINIVSSIPRNPTGKVLRKE 513 (516)
T ss_pred ----C-------------------------------C--CCHHHHHHHHHHhcccCCCCcEEEEeCCCCCCCCCcCcHHH
Confidence 1 0 12457999999999999999999999999999999999998
Q ss_pred HH
Q psy8076 717 IV 718 (737)
Q Consensus 717 l~ 718 (737)
|+
T Consensus 514 L~ 515 (516)
T PRK13383 514 LP 515 (516)
T ss_pred hC
Confidence 74
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=571.33 Aligned_cols=544 Identities=19% Similarity=0.173 Sum_probs=401.3
Q ss_pred CchhHHHHHHhhhhhccCCCceEEEEeC---CCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHH
Q psy8076 74 GEINACYNAIDRHVERGMAKKVALIHDS---PVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVS 150 (737)
Q Consensus 74 ~~~n~~~~~l~~~~~~~~pd~~Al~~~~---~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva 150 (737)
+..+++.++|+++++++ |+++|+.+.. ...+.+..+||+||.++++++|++|.+.|+++||+|+|+++|++||+++
T Consensus 39 ~~~~t~~~~~~~~~~~~-p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~ 117 (660)
T PLN02430 39 SDITTAWDIFSKSVEKY-PDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVA 117 (660)
T ss_pred CCCCCHHHHHHHHHHhC-CCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence 45678999999999998 9999997642 1223456789999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccc
Q psy8076 151 MLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAE 230 (737)
Q Consensus 151 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~ 230 (737)
+|||+++|+++||+++.++++++.+++++++++++++++.. ....+.......+ .++.++++.........
T Consensus 118 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~--------~~~~~~~~~~~~~-~l~~ii~~~~~~~~~~~ 188 (660)
T PLN02430 118 MEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKK--------IKELLEPDCKSAK-RLKAIVSFTSVTEEESD 188 (660)
T ss_pred HHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHH--------HHHHHhhhcccCC-CceEEEEECCCChHHhh
Confidence 99999999999999999999999999999999999997531 1112221111122 45566666432110000
Q ss_pred ---cCCCCcccHHHHHhhcCC--CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHh--
Q psy8076 231 ---LTPGYDILWDDALAQRLS--HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMS-- 303 (737)
Q Consensus 231 ---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~-- 303 (737)
........|+++...... ....+..++++++|+||||||| .||||+++|++++.+......
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG------------~PKGV~lth~~~~~~~~~~~~~~ 256 (660)
T PLN02430 189 KASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSG------------DPKGVVLTHEAVATFVRGVDLFM 256 (660)
T ss_pred hhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCC------------CCCEEEeecHHHHHHHHHHHhhc
Confidence 000112456666543322 1223456899999999999999 999999999987766543211
Q ss_pred hh--hcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHc
Q psy8076 304 VI--YNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRE 381 (737)
Q Consensus 304 ~~--~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~ 381 (737)
.. .+++++|++++++|++|.++... .+.++..|++++++. .++..+++.|+++++|++.++|.+++.+.+.
T Consensus 257 ~~~~~~~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~i~~~~------~~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~ 329 (660)
T PLN02430 257 EQFEDKMTHDDVYLSFLPLAHILDRMI-EEYFFRKGASVGYYH------GDLNALRDDLMELKPTLLAGVPRVFERIHEG 329 (660)
T ss_pred cccccCCCCCCEEEEeCcHHHHHHHHH-HHHHHHcCCEEEEeC------CChhhHHHHHHHhCCcEEEecHHHHHHHHHH
Confidence 11 25678999999999999998765 455788999998875 3577899999999999999999999887652
Q ss_pred CCCC----cc-----------------------ccCC---C----------C-CCccEEEeecCCCCHHHHHHHHHhcCC
Q psy8076 382 DKDS----TL-----------------------GAQY---S----------T-DSLRYLFVAGEHCDHETKNWAEKSFNV 420 (737)
Q Consensus 382 ~~~~----~~-----------------------~~~~---~----------l-~~Lr~i~~gGe~l~~~~~~~~~~~~~~ 420 (737)
.... .. .... + + ++||.+++||+++++++.++++...+.
T Consensus 330 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~~~~~ 409 (660)
T PLN02430 330 IQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCA 409 (660)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHHhcCC
Confidence 1000 00 0000 0 1 589999999999999987766654346
Q ss_pred cccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCccc
Q psy8076 421 TMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHF 500 (737)
Q Consensus 421 ~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (737)
.+++.||+||+++..+.... .....+ +++|+|+++++ ++
T Consensus 410 ~i~~~YG~TE~~~~~~~~~~---~~~~~~-gsvG~p~~~~e-----vk-------------------------------- 448 (660)
T PLN02430 410 FVVQGYGLTETLGPTTLGFP---DEMCML-GTVGAPAVYNE-----LR-------------------------------- 448 (660)
T ss_pred CeeeecchhhhhhceEeecc---ccCCCC-CCccCCCCceE-----EE--------------------------------
Confidence 89999999999876655322 122234 78899998887 77
Q ss_pred ccceEEEEc--CCC-CccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecC
Q psy8076 501 TSVEVRIIR--NDG-SECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDD 577 (737)
Q Consensus 501 ~~~~~~Ivd--~~g-~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~d 577 (737)
|+| +.| .+++.+..|||+|+|| +++.|||++++.+.+.+ .+|||+|||+|++|+||+|+|+||+|
T Consensus 449 ------i~d~~~~g~~~~~~~~~GEi~vrg~---~v~~GY~~~~e~t~~~~---~dGw~~TGDig~~d~dG~l~i~gR~k 516 (660)
T PLN02430 449 ------LEEVPEMGYDPLGEPPRGEICVRGK---CLFSGYYKNPELTEEVM---KDGWFHTGDIGEILPNGVLKIIDRKK 516 (660)
T ss_pred ------EEEcCCcCcccCCCCCcceEEecCC---CccccccCChHHhhhhh---hccceeccceEEECCCCcEEEEEccc
Confidence 776 333 4566677899999999 99999999999998876 38999999999999999999999999
Q ss_pred CeEee-CcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccc
Q psy8076 578 DVINV-AGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIR 656 (737)
Q Consensus 578 d~Ik~-~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (737)
|+||+ +|++|+|.+||++|.+||.|.+|+|+|.. .++.++|+|+++.+.+.++........
T Consensus 517 d~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~---~~~~~~A~vv~~~~~~~~~~~~~~~~~--------------- 578 (660)
T PLN02430 517 NLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS---FKSMLVAVVVPNEENTNKWAKDNGFTG--------------- 578 (660)
T ss_pred ccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC---CcceEEEEEEcCHHHHHHHHHhCCCCC---------------
Confidence 99997 49999999999999999999999999842 356799999987653322211100000
Q ss_pred cccCCCCCCcccccCCChHHHHHHHHHHHH-HhcCCceeeeeEEEcCC-C-----CCCCCchhhHHHHHHHHcC
Q psy8076 657 VLIKPYGPISSIYCTRSDEEIGKELKELVR-EAIGPIAAFKLSTSVTG-L-----PRTRSGKTARKSIVDMARN 723 (737)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~l~~~~~p~~~~~v~~-l-----P~t~sGKi~R~~l~~~~~~ 723 (737)
..........-.+.+.+++.+..+ +.|+.|..++.|.+.++ | .+|+++|+.|+.+.+.|.+
T Consensus 579 ------~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~ 646 (660)
T PLN02430 579 ------SFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQV 646 (660)
T ss_pred ------CHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHH
Confidence 000000000011223344444432 35999999999998764 3 5899999999999998865
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=551.88 Aligned_cols=454 Identities=20% Similarity=0.281 Sum_probs=383.8
Q ss_pred CCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCHH
Q psy8076 92 AKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAAR 171 (737)
Q Consensus 92 pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~ 171 (737)
++++|+++.+ +.+||+||.++++++|..|. ++|+|+++++|++++++++|||+++|++++|+++..+.+
T Consensus 14 ~~~~a~~~~~------~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~ 82 (471)
T PRK07787 14 DIADAVRIGG------RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVA 82 (471)
T ss_pred CCceEEEeCC------cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChH
Confidence 8999999876 89999999999999999986 479999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHHHhhcCCCCC
Q psy8076 172 ELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRC 251 (737)
Q Consensus 172 ~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (737)
++..+++++++++++++..... . ......+ ... ...+. ..
T Consensus 83 ~l~~~l~~~~~~~il~~~~~~~---------------~----~~~~~~~-~~~-----------~~~~~---------~~ 122 (471)
T PRK07787 83 ERRHILADSGAQAWLGPAPDDP---------------A----GLPHVPV-RLH-----------ARSWH---------RY 122 (471)
T ss_pred HHHHHHHhcCCCEEEecCCccc---------------c----cccceee-ecc-----------ccccc---------cC
Confidence 9999999999999999753100 0 0000000 000 00000 01
Q ss_pred ccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccccchhhhhh
Q psy8076 252 VPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICY 331 (737)
Q Consensus 252 ~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~ 331 (737)
....++++++++||||||| .||||+++|+++...... +...+++..+|++++.+|++|..|+...++
T Consensus 123 ~~~~~~~~a~i~~TSGTTG------------~PK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~ 189 (471)
T PRK07787 123 PEPDPDAPALIVYTSGTTG------------PPKGVVLSRRAIAADLDA-LAEAWQWTADDVLVHGLPLFHVHGLVLGVL 189 (471)
T ss_pred CCCCCCceEEEEECCCCCC------------CCCEEEEeHHHHHHHHHH-HHHhcCCCccceeEeccCCeeechhHHHHH
Confidence 1245789999999999999 999999999887665544 455678899999999999999999888899
Q ss_pred hccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHH
Q psy8076 332 GPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETK 411 (737)
Q Consensus 332 ~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~ 411 (737)
.++..|+++++.+. +++..+++.++ +++|++.++|+++..|.+... ....++++|.+++||+++++++.
T Consensus 190 ~~l~~G~~~~~~~~-----~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~-----~~~~l~~l~~~~~gg~~~~~~~~ 258 (471)
T PRK07787 190 GPLRIGNRFVHTGR-----PTPEAYAQALS-EGGTLYFGVPTVWSRIAADPE-----AARALRGARLLVSGSAALPVPVF 258 (471)
T ss_pred HHHhcCCEEEecCC-----CCHHHHHHHHh-hCceEEEcchHHHHHHHhCcc-----ccccccceeEEEECCCCCCHHHH
Confidence 99999999998763 68999999999 999999999999999887432 22357899999999999999999
Q ss_pred HHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCC
Q psy8076 412 NWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNV 491 (737)
Q Consensus 412 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (737)
++|.+.++.++++.||+||++...+.. ......+ .++|+|++|+. ++
T Consensus 259 ~~~~~~~~~~~~~~YG~tE~~~~~~~~----~~~~~~~-~~vG~~~~g~~-----~~----------------------- 305 (471)
T PRK07787 259 DRLAALTGHRPVERYGMTETLITLSTR----ADGERRP-GWVGLPLAGVE-----TR----------------------- 305 (471)
T ss_pred HHHHHHcCCCeecccCccccCcceecC----CCCcccC-CcccccCCCcE-----EE-----------------------
Confidence 999998999999999999998644332 1222334 67888888887 77
Q ss_pred CCCCCCcccccceEEEEcCCCCccC-CCc-ceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCce
Q psy8076 492 PKGQNATHFTSVEVRIIRNDGSECE-PHE-LGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGY 569 (737)
Q Consensus 492 ~~~~~~~~~~~~~~~Ivd~~g~~~~-~g~-~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~ 569 (737)
|+|++|++++ .|+ .|||+++|+ +++.||+++++.+.+.|.. +|||+|||+|++++||+
T Consensus 306 ---------------i~d~~~~~~~~~~~~~Gei~v~g~---~~~~gy~~~~~~t~~~~~~--~~~~~TGDlg~~~~dg~ 365 (471)
T PRK07787 306 ---------------LVDEDGGPVPHDGETVGELQVRGP---TLFDGYLNRPDATAAAFTA--DGWFRTGDVAVVDPDGM 365 (471)
T ss_pred ---------------EECCCCCCCCCCCCCceEEEEECc---ccchhhcCChhhchhcccC--CCceecCceEEEcCCCC
Confidence 9999999987 344 899999999 9999999999998877643 68999999999999999
Q ss_pred EEEEeec-CCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCC
Q psy8076 570 IYVTARD-DDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPT 648 (737)
Q Consensus 570 l~i~GR~-dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (737)
++++||+ ||++|++|++|++.|||++|.++|.|.+++|++.+++..++.++++++.... .
T Consensus 366 l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~------------~------- 426 (471)
T PRK07787 366 HRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADD------------V------- 426 (471)
T ss_pred EEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCCC------------C-------
Confidence 9999996 8999999999999999999999999999999999988888899999987332 1
Q ss_pred ccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHH
Q psy8076 649 SLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDM 720 (737)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~ 720 (737)
..+++.+++++.|++++.|..++++++||+|++||++|++|+++
T Consensus 427 ----------------------------~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~~~~GKi~r~~L~~~ 470 (471)
T PRK07787 427 ----------------------------AADELIDFVAQQLSVHKRPREVRFVDALPRNAMGKVLKKQLLSE 470 (471)
T ss_pred ----------------------------CHHHHHHHHHhhcccccCCcEEEEeccCCCCCCccccHHHhccC
Confidence 24578999999999999999999999999999999999999763
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-62 Score=552.10 Aligned_cols=468 Identities=21% Similarity=0.314 Sum_probs=352.2
Q ss_pred ecCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEE
Q psy8076 141 MPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCII 220 (737)
Q Consensus 141 ~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv 220 (737)
++|++|+++++|||+++|++++|+++.++.+++.+++++++++++|+++......+... .+....... .. +.++
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~---~~~~~~~~~--~~-~~i~ 74 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALP---LYSKVVEAA--PA-KAIV 74 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeec---chhhhhhcc--cc-eEEE
Confidence 58999999999999999999999999999999999999999999999864321111111 112111111 11 2333
Q ss_pred EecccccccccCCCCcccHHHHHhhcC--------CCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCc
Q psy8076 221 FQRRCVEEAELTPGYDILWDDALAQRL--------SHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVG 292 (737)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~ 292 (737)
+.................|.++..... ........++++++|+||||||| .||||+++|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG------------~PKgV~~sh~ 142 (499)
T PLN03051 75 LPAAGEPVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTG------------EPKAIPWTHL 142 (499)
T ss_pred EeccCcccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCC------------CCceEEEccc
Confidence 321100000000012234555542111 01111235689999999999999 9999999999
Q ss_pred hhHHHHHHHHhhhhcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecH
Q psy8076 293 GHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAP 372 (737)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P 372 (737)
+++.+... ....++++.+|++++.+|++|+.++ +.++.+|+.|+++++.+. .+++..+++.|+++++|++.++|
T Consensus 143 ~~~~~~~~-~~~~~~~~~~d~~l~~~pl~h~~g~-~~~~~~l~~G~t~v~~~~----~~~~~~~~~~i~~~~vt~~~~vP 216 (499)
T PLN03051 143 SPLRCASD-GWAHMDIQPGDVVCWPTNLGWMMGP-WLLYSAFLNGATLALYGG----APLGRGFGKFVQDAGVTVLGLVP 216 (499)
T ss_pred hHHHHHHH-HHHhcCCCCCCEEEEccCcceeeeh-HHHHHHHHcCCEEEecCC----CCCcHHHHHHHHHhCCcEEEeCH
Confidence 87665443 3345788899999999999999995 458889999999999864 24678999999999999999999
Q ss_pred HHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhc--CCcccccccccccccccccccccCCCCCCCCC
Q psy8076 373 TALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF--NVTMLNHWWQTETGHSITAHCLGYQHDTVPPK 450 (737)
Q Consensus 373 ~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~ 450 (737)
+++..|.+...... ...++++||.+++||+++++++.+++.+.+ +..+++.||+||++..++.... ....++
T Consensus 217 ~~~~~l~~~~~~~~--~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~---~~~~~~- 290 (499)
T PLN03051 217 SIVKAWRHTGAFAM--EGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTL---LQPQAP- 290 (499)
T ss_pred HHHHHHHhcCcccc--ccCCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccc---cCCCCC-
Confidence 99999877542101 344678999999999999999998887733 4789999999998754332211 112233
Q ss_pred CccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCC--cceEEEEecC
Q psy8076 451 YSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPH--ELGRIVVKLP 528 (737)
Q Consensus 451 ~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g--~~GEL~i~g~ 528 (737)
+++|+|.+|++ ++ |+|++|++++.| +.|||+|+||
T Consensus 291 ~~~G~p~~~~~-----~~--------------------------------------ivd~~g~~~~~g~~~~Gel~v~g~ 327 (499)
T PLN03051 291 GAFSTASLGTR-----FV--------------------------------------LLNDNGVPYPDDQPCVGEVALAPP 327 (499)
T ss_pred ccccCCCCCce-----EE--------------------------------------EECCCCCCCCCCCCcceEEEEecC
Confidence 67888888888 77 999999999998 5899999999
Q ss_pred CCCCcccccccChhhhHHhhccC-------CCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhc-CC
Q psy8076 529 LPPGTMSTLYKAPQRFMKIYFTK-------FPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLS-HP 600 (737)
Q Consensus 529 ~~~~~~~gy~~~~~~~~~~~~~~-------~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~-~p 600 (737)
+. +.+.|||+++. .+.|+.. ..+||+|||+|++|+||+|+|+||.||+||++|+||+|.|||++|.+ ||
T Consensus 328 ~~-~~~~gy~~~~~--~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p 404 (499)
T PLN03051 328 ML-GASDRLLNADH--DKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVA 404 (499)
T ss_pred cC-CCCccccCCcc--cceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHHhcCC
Confidence 42 33689998653 2334321 12379999999999999999999999999999999999999999996 99
Q ss_pred CcceeEEecccCCCCC-cceEEEE---EeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHH
Q psy8076 601 DVGDTAVIGVPEPTKG-EIPFCLY---IKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEE 676 (737)
Q Consensus 601 ~V~~a~vv~~~~~~~~-~~~~a~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (737)
+|.+|+|++++++..+ +.++||| +++++ .. ....++
T Consensus 405 ~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~------------~~----------------------------~~~~~~ 444 (499)
T PLN03051 405 GIAETAAVGVAPPDGGPELLVIFLVLGEEKKG------------FD----------------------------QARPEA 444 (499)
T ss_pred CcceEEEEEecCCCCCceEEEEEEEcceeccc------------cc----------------------------ccchHH
Confidence 9999999999998888 6788888 66543 10 012355
Q ss_pred HHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHHHcCC
Q psy8076 677 IGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNK 724 (737)
Q Consensus 677 ~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~~ 724 (737)
+.+.++++++++|++++.|..++++++||+|++||++|++|++.+.+.
T Consensus 445 l~~~~~~~l~~~l~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 492 (499)
T PLN03051 445 LQKKFQEAIQTNLNPLFKVSRVKIVPELPRNASNKLLRRVLRDQLKKE 492 (499)
T ss_pred HHHHHHHHHHhhcCCccCCceEEEcCCCCCCCCccHHHHHHHHHHHHh
Confidence 677778888888998777778999999999999999999999877543
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-61 Score=549.73 Aligned_cols=503 Identities=22% Similarity=0.264 Sum_probs=404.5
Q ss_pred hhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEe
Q psy8076 84 DRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSV 163 (737)
Q Consensus 84 ~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vp 163 (737)
+.+++++ |+++|+++.+. .+.+||+||+++++++|+.|.++|+++|++|+++++|+++++++++||+++|++++|
T Consensus 4 ~~~a~~~-p~~~a~~~~~~----~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~ 78 (511)
T PRK13391 4 GIHAQTT-PDKPAVIMAST----GEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTC 78 (511)
T ss_pred hhhHhhC-CCceEEEecCC----CCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEec
Confidence 3556666 99999987531 378999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHHH
Q psy8076 164 VFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDAL 243 (737)
Q Consensus 164 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~ 243 (737)
+++.++.+++.++++++++++++++... ...+.+....++ .....+.+... .. ......+.+..
T Consensus 79 l~~~~~~~~l~~~l~~~~~~~li~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~-~~-----~~~~~~~~~~~ 142 (511)
T PRK13391 79 VNSHLTPAEAAYIVDDSGARALITSAAK---------LDVARALLKQCP-GVRHRLVLDGD-GE-----LEGFVGYAEAV 142 (511)
T ss_pred cccccCHHHHHHHHhccCCcEEEEchhh---------HHHHHHHHhcCC-CceEEEEecCC-CC-----CcccccHHHHh
Confidence 9999999999999999999999998752 122233333332 33333433321 00 01112233332
Q ss_pred hhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeecc--CchhHHH--HHHHHhhhhcCCCCcEEEEecc
Q psy8076 244 AQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRP--VGGHIAT--LAWTMSVIYNMGQDDVWWTASD 319 (737)
Q Consensus 244 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~t--h~~~~~~--~~~~~~~~~~~~~~d~~l~~~~ 319 (737)
..... ......++.++++||||||| .||||+++ |.+.... ........+++..++++++.+|
T Consensus 143 ~~~~~--~~~~~~~~~a~il~TSGtTG------------~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 208 (511)
T PRK13391 143 AGLPA--TPIADESLGTDMLYSSGTTG------------RPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAP 208 (511)
T ss_pred cCCCC--CCCCCcccccEEEECCCCCC------------CCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCC
Confidence 22111 11123456799999999999 99999954 5443222 2233445677889999999999
Q ss_pred cccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEE
Q psy8076 320 MGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYL 399 (737)
Q Consensus 320 ~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i 399 (737)
++|..++.. .+.++..|+++++.+ ..++..+++.++++++|++.++|++++.+.+...... ...+++++|.+
T Consensus 209 ~~h~~~~~~-~~~~~~~g~~~~~~~-----~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--~~~~~~~l~~~ 280 (511)
T PRK13391 209 LYHSAPQRA-VMLVIRLGGTVIVME-----HFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR--DKYDLSSLEVA 280 (511)
T ss_pred HHHHHHHHH-HHHHHHcCceEEECC-----CCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhc--ccCCccceeEE
Confidence 999988654 577899999999986 3689999999999999999999999998876543211 34467899999
Q ss_pred EeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcccc
Q psy8076 400 FVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHC 479 (737)
Q Consensus 400 ~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~ 479 (737)
++||+++++++.+++.+.+|..+++.||+||++....... ......+ +++|+|+++ . ++
T Consensus 281 ~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~---~~~~~~~-~~vG~~~~g-~-----~~----------- 339 (511)
T PRK13391 281 IHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDS---EEWLAHP-GTVGRAMFG-D-----LH----------- 339 (511)
T ss_pred EEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecC---ccccccC-CCcCCcccc-e-----EE-----------
Confidence 9999999999999999988989999999999986544321 1112333 678888887 4 66
Q ss_pred ccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecC
Q psy8076 480 VRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTM 559 (737)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TG 559 (737)
|+|++|++++.|+.|||+++|+ ++.||+++++.+.+.+..+ +|||+||
T Consensus 340 ---------------------------i~d~~~~~~~~g~~Gel~~~g~----~~~gy~~~~~~~~~~~~~~-~~w~~TG 387 (511)
T PRK13391 340 ---------------------------ILDDDGAELPPGEPGTIWFEGG----RPFEYLNDPAKTAEARHPD-GTWSTVG 387 (511)
T ss_pred ---------------------------EECCCCCCCCCCCceEEEEecC----cceEEcCChhHhHHhhccC-CCEEecC
Confidence 9999999999999999999996 6779999999888876543 6899999
Q ss_pred ceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccc
Q psy8076 560 DAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLI 639 (737)
Q Consensus 560 Dl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~ 639 (737)
|+|+++++|.+++.||.||++|++|++|++.|||++|.+||.|.+++|++.+++..++.+++++++..+
T Consensus 388 D~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~----------- 456 (511)
T PRK13391 388 DIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDG----------- 456 (511)
T ss_pred CEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCC-----------
Confidence 999999999999999999999999999999999999999999999999999998888889999987654
Q ss_pred cccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHH
Q psy8076 640 GFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVD 719 (737)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~ 719 (737)
. ...+.+.++|+++++++++.|+.|..+.+++++|+|++||++|+.|++
T Consensus 457 -~------------------------------~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~ 505 (511)
T PRK13391 457 -V------------------------------DPGPALAAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLRD 505 (511)
T ss_pred -C------------------------------CcccchHHHHHHHHHhhcccCcCCcEEEEeecCCCCCccceeHHHHHH
Confidence 1 112335678999999999999999999999999999999999999999
Q ss_pred HHcCC
Q psy8076 720 MARNK 724 (737)
Q Consensus 720 ~~~~~ 724 (737)
.+.++
T Consensus 506 ~~~~~ 510 (511)
T PRK13391 506 RYWGN 510 (511)
T ss_pred Hhhcc
Confidence 98765
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-62 Score=567.90 Aligned_cols=519 Identities=18% Similarity=0.164 Sum_probs=386.8
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++++++ |+++|+++.+ ..+.++.+||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++
T Consensus 40 ~l~~~l~~~a~~~-p~~~a~~~~~-~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~ 117 (614)
T PRK08180 40 RLTDRLVHWAQEA-PDRVFLAERG-ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYA 117 (614)
T ss_pred cHHHHHHHHHHHC-CCCceeeecc-CCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHc
Confidence 5788999999988 9999998753 1234589999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCC-----HHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccC
Q psy8076 158 GAIHSVVFGGFA-----ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELT 232 (737)
Q Consensus 158 G~~~vpl~~~~~-----~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~ 232 (737)
|++++|++|.++ .+++.+++++++++++|+++.. .....+.........+++.... ..
T Consensus 118 Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~-----------~~~~~~~~~~~~~~~~i~~~~~------~~ 180 (614)
T PRK08180 118 GVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGA-----------AFARALAAVVPADVEVVAVRGA------VP 180 (614)
T ss_pred CCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHH-----------HHHHHHhhhccCCceEEEecCC------CC
Confidence 999999999998 7999999999999999997531 1111111111111223332211 00
Q ss_pred CCCcccHHHHHhhcCC----CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcC
Q psy8076 233 PGYDILWDDALAQRLS----HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNM 308 (737)
Q Consensus 233 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~ 308 (737)
......+.++...... .......++++++|+||||||| .||||+++|++++.+... ....+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG------------~PKgV~~sh~~l~~~~~~-~~~~~~~ 247 (614)
T PRK08180 181 GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTG------------LPKAVINTHRMLCANQQM-LAQTFPF 247 (614)
T ss_pred CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCC------------CCCEEEeehHHHHHHHHH-HHhhccc
Confidence 0112445555443211 1112346799999999999999 999999999987766544 3334555
Q ss_pred C--CCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCc
Q psy8076 309 G--QDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDST 386 (737)
Q Consensus 309 ~--~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~ 386 (737)
. .++++++++|++|.+++...++.+|..|+++++.++.+. ..++..+++.++++++|+++++|+++..|.+......
T Consensus 248 ~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~-~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~ 326 (614)
T PRK08180 248 LAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPT-PGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDA 326 (614)
T ss_pred cCCCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCcc-chhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhch
Confidence 3 568999999999999987778889999999999764221 2245678899999999999999999999876532211
Q ss_pred cccCCCCCCccEEEeecCCCCHHHHHHHHHh----cC--CcccccccccccccccccccccCCCCCCCCCCccCCCcCCC
Q psy8076 387 LGAQYSTDSLRYLFVAGEHCDHETKNWAEKS----FN--VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGY 460 (737)
Q Consensus 387 ~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~----~~--~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~ 460 (737)
.....++++||.+++||+++++++.+++.+. ++ .++++.||+||++..++.... ....+ +++|+|++|+
T Consensus 327 ~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~----~~~~~-~svG~p~pg~ 401 (614)
T PRK08180 327 ALRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTG----PLSRA-GNIGLPAPGC 401 (614)
T ss_pred hhhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEeccc----ccCCC-CcccCccCCc
Confidence 1123457899999999999999999998874 34 678999999999866554321 12334 7899999988
Q ss_pred CCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccC
Q psy8076 461 DGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKA 540 (737)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~ 540 (737)
+ ++ |+|+ |..|||+|+|| +++.|||++
T Consensus 402 ~-----v~--------------------------------------i~d~-------~~~GEi~vrg~---~v~~GY~~~ 428 (614)
T PRK08180 402 E-----VK--------------------------------------LVPV-------GGKLEVRVKGP---NVTPGYWRA 428 (614)
T ss_pred E-----EE--------------------------------------EecC-------CCCcEEEEecC---ccchhhcCC
Confidence 8 77 8875 34699999999 999999999
Q ss_pred hhhhHHhhccCCCCeeecCceEEE----ecCceEEEEeecCCeEee-CcEEec--hHHHHHHHhcCCCcceeEEecccCC
Q psy8076 541 PQRFMKIYFTKFPGYYDTMDAGYY----DENGYIYVTARDDDVINV-AGHRLS--TSALEDVVLSHPDVGDTAVIGVPEP 613 (737)
Q Consensus 541 ~~~~~~~~~~~~~g~~~TGDl~~~----~~dG~l~i~GR~dd~Ik~-~G~rv~--~~eIE~~l~~~p~V~~a~vv~~~~~ 613 (737)
++.+.+.|. .+|||+|||+|++ |+||+|+|+||+||+||+ +|++|+ +.|||.++.+||.|.+|+|++.+++
T Consensus 429 p~~t~~~~~--~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~ 506 (614)
T PRK08180 429 PELTAEAFD--EEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRD 506 (614)
T ss_pred hhHhHhhcc--cCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCC
Confidence 998887653 3799999999999 468999999999998886 598776 7889999999999999999999775
Q ss_pred CCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCce
Q psy8076 614 TKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIA 693 (737)
Q Consensus 614 ~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 693 (737)
.+.|+|+++++....+.... .... .......++|++++++.|..+.
T Consensus 507 ----~~~a~V~~~~~~~~~~~~~~--------------------------~~~~----~~~~~~~~~l~~~~~~~l~~~~ 552 (614)
T PRK08180 507 ----EIGLLVFPNLDACRRLAGLL--------------------------ADAS----LAEVLAHPAVRAAFRERLARLN 552 (614)
T ss_pred ----ceEEEEEcCHHHHHHHHhhc--------------------------ccCC----HHHHhcCHHHHHHHHHHHHHHH
Confidence 47788887654110000000 0000 0000112345555555555554
Q ss_pred --------eeeeEEEcCCCCCCC------CchhhHHHHHHHHcC
Q psy8076 694 --------AFKLSTSVTGLPRTR------SGKTARKSIVDMARN 723 (737)
Q Consensus 694 --------~p~~~~~v~~lP~t~------sGKi~R~~l~~~~~~ 723 (737)
.|+++++++++|+|+ +||+.|+++.+.|.+
T Consensus 553 ~~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~ 596 (614)
T PRK08180 553 AQATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAA 596 (614)
T ss_pred hhccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHH
Confidence 899999999999865 557888888887765
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=575.12 Aligned_cols=532 Identities=18% Similarity=0.218 Sum_probs=387.4
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCC-----------C----------CCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCE
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSP-----------V----------TKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDR 136 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~-----------~----------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~ 136 (737)
++.++|.++++++ ||++|+.+... . .++.+.+||+||+++++++|++|.++|+++||+
T Consensus 70 t~~~~~~~~~~~~-p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~ 148 (700)
T PTZ00216 70 NFLQRLERICKER-GDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSN 148 (700)
T ss_pred CHHHHHHHHHHhC-CCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 5899999999999 99999998521 0 124689999999999999999999999999999
Q ss_pred EEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCC
Q psy8076 137 VLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPD 216 (737)
Q Consensus 137 V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (737)
|+|+++|++||++++|||+++|++++|+++.++++++.++++++++++++++.... ..+............
T Consensus 149 V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~---------~~l~~~~~~~~~~~~ 219 (700)
T PTZ00216 149 VAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNV---------PNLLRLMKSGGMPNT 219 (700)
T ss_pred EEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHH---------HHHHHhhhhccCCce
Confidence 99999999999999999999999999999999999999999999999999975321 112121211111122
Q ss_pred eEEEEecccccccccCCCCcccHHHHHhhcC--C---CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccC
Q psy8076 217 YCIIFQRRCVEEAELTPGYDILWDDALAQRL--S---HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPV 291 (737)
Q Consensus 217 ~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th 291 (737)
.++++... .............|.++..... . ....+..++++++|+||||||| .||||+++|
T Consensus 220 ~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG------------~PKGV~lth 286 (700)
T PTZ00216 220 TIIYLDSL-PASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTG------------DPKGVMHTH 286 (700)
T ss_pred EEEEECCC-ccccccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCC------------cCcEEEEEh
Confidence 44444321 1111111112346666654431 1 1123356899999999999999 999999999
Q ss_pred chhHHHHHHHHhh---hhc-CCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHH-------HH
Q psy8076 292 GGHIATLAWTMSV---IYN-MGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYR-------VI 360 (737)
Q Consensus 292 ~~~~~~~~~~~~~---~~~-~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~-------~i 360 (737)
++++.+....... .++ +.++|++++++|++|+++... ....+..|+++++. ++..+.+ .+
T Consensus 287 ~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~v~~~--------~~~~l~~~~~~~~~~l 357 (700)
T PTZ00216 287 GSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGV-TNIFLARGALIGFG--------SPRTLTDTFARPHGDL 357 (700)
T ss_pred HHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHH-HHHHHHcCCEEEEC--------CHHHhhhhhccccchH
Confidence 9977665543221 122 468899999999999988654 34557778776652 2344444 68
Q ss_pred HhcCCcEEeecHHHHHHHHHcCCCCcc---------------------ccCC----------------CCCCccEEEeec
Q psy8076 361 HNHKVNGLFTAPTALRVIRREDKDSTL---------------------GAQY----------------STDSLRYLFVAG 403 (737)
Q Consensus 361 ~~~~vt~l~~~P~~~~~l~~~~~~~~~---------------------~~~~----------------~l~~Lr~i~~gG 403 (737)
+++++|++.++|.+++.+.+....... .... ..++||.+++||
T Consensus 358 ~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GG 437 (700)
T PTZ00216 358 TEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGG 437 (700)
T ss_pred HHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECC
Confidence 899999999999999887643110000 0000 015899999999
Q ss_pred CCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcccccccc
Q psy8076 404 EHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRIL 483 (737)
Q Consensus 404 e~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~ 483 (737)
+++++++.+++...++ ++++.||+||+++..+.... ....+ +++|+|++|++ ++
T Consensus 438 a~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~----~~~~~-~svG~p~~g~e-----vk--------------- 491 (700)
T PTZ00216 438 GPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRT----GDLEP-NAVGQLLKGVE-----MK--------------- 491 (700)
T ss_pred CCCCHHHHHHHHHHhh-hHhhccCcccccccccccCC----CCCCC-CCcCCcCCCeE-----EE---------------
Confidence 9999999998888778 99999999999866554321 12234 78999999888 77
Q ss_pred ccccccCCCCCCCCcccccceEEEEcCCC--CccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCce
Q psy8076 484 PESLRKNVPKGQNATHFTSVEVRIIRNDG--SECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDA 561 (737)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g--~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl 561 (737)
|+|+++ ...+++..|||+|+|| +++.|||++++.|.+.|.. +|||+|||+
T Consensus 492 -----------------------I~d~~~~~~~~~~~~~GEL~vrG~---~v~~GY~~~pe~T~~~f~~--dGw~~TGDi 543 (700)
T PTZ00216 492 -----------------------LLDTEEYKHTDTPEPRGEILLRGP---FLFKGYYKQEELTREVLDE--DGWFHTGDV 543 (700)
T ss_pred -----------------------EeechhhccCCCCCCCceEEEcCC---cccchhcCChhHhhhhccc--cCCeeccce
Confidence 999764 3345667899999999 9999999999999988743 789999999
Q ss_pred EEEecCceEEEEeecCCeEe-eCcEEechHHHHHHHhcCCCcce--eEEecccCCCCCcceEEEEEeecCCCCcCCcccc
Q psy8076 562 GYYDENGYIYVTARDDDVIN-VAGHRLSTSALEDVVLSHPDVGD--TAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGL 638 (737)
Q Consensus 562 ~~~~~dG~l~i~GR~dd~Ik-~~G~rv~~~eIE~~l~~~p~V~~--a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~ 638 (737)
|++|+||+|+|+||+||+|| .+|++|+|.|||++|.+||.|.+ ++|++.++ ...++|+|+++.+...++.....
T Consensus 544 g~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~---~~~l~a~vv~~~~~~~~~~~~~~ 620 (700)
T PTZ00216 544 GSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPA---RSYICALVLTDEAKAMAFAKEHG 620 (700)
T ss_pred EEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecC---CceEEEEEecCHHHHHHHHHHcC
Confidence 99999999999999999999 88999999999999999999997 34444322 34789999886542221110000
Q ss_pred ccccccCCCCccCCCccccccCCCCCCcccccCCChHHHH----HHHHHHHH-HhcCCceeeeeEEEcCC------CCCC
Q psy8076 639 IGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIG----KELKELVR-EAIGPIAAFKLSTSVTG------LPRT 707 (737)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~l~-~~l~~~~~p~~~~~v~~------lP~t 707 (737)
.. .+........... +++.+..+ +.+..+..++.|.++.+ -.+|
T Consensus 621 ~~-------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT 675 (700)
T PTZ00216 621 IE-------------------------GEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLT 675 (700)
T ss_pred CC-------------------------CCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCC
Confidence 00 0000001112233 33333332 36888999999998743 3479
Q ss_pred CCchhhHHHHHHHHcC
Q psy8076 708 RSGKTARKSIVDMARN 723 (737)
Q Consensus 708 ~sGKi~R~~l~~~~~~ 723 (737)
+++|+.|+.+.+.|.+
T Consensus 676 ~t~K~~R~~i~~~y~~ 691 (700)
T PTZ00216 676 AAMKLKRRVIDERYAD 691 (700)
T ss_pred hhhccchHHHHHHHHH
Confidence 9999999999998865
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-61 Score=553.35 Aligned_cols=520 Identities=20% Similarity=0.266 Sum_probs=400.0
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcC
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 158 (737)
....|++++..+ |+++|+++.+ .++||+||+++++++|+.|.+.|+++||+|+++++|++++++++|||+++|
T Consensus 22 ~~~~~~~~~~~~-p~~~a~~~~~------~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G 94 (567)
T PLN02479 22 PLWFLERAAVVH-PTRKSVVHGS------VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAG 94 (567)
T ss_pred HHHHHHHHHhhC-CCceEEEECC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCC
Confidence 567788888887 9999999865 789999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcC------CCCCeEEEEecccccccc--
Q psy8076 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISS------CKPDYCIIFQRRCVEEAE-- 230 (737)
Q Consensus 159 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~viv~~~~~~~~~~-- 230 (737)
++++|+++.++.+++.+++++++++++++++... ....++...+. .....++++.........
T Consensus 95 ~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (567)
T PLN02479 95 AVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFF---------TLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQ 165 (567)
T ss_pred cEEEEeccccCHHHHHHHHhhcCceEEEEchhhh---------hHHHHHHHHHhhcccccCCCceEEEecCCcCCccccc
Confidence 9999999999999999999999999999987532 12222222111 112234443321100000
Q ss_pred -cCCCCcccHHHHHhhcCCC-C-CccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhc
Q psy8076 231 -LTPGYDILWDDALAQRLSH-R-CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYN 307 (737)
Q Consensus 231 -~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~ 307 (737)
........|.++....... . ..+...+++++++||||||| .||||+++|++++..... ....++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG------------~PKgV~~sh~~~~~~~~~-~~~~~~ 232 (567)
T PLN02479 166 YALGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTA------------SPKGVVLHHRGAYLMALS-NALIWG 232 (567)
T ss_pred cccccCcccHHHHHhccccccccCCCCCcccceEEEECCCCCC------------CCcEEEeccHHHHHHHHH-HHhhcC
Confidence 0112334566655433221 1 11233457888999999999 999999999886554433 334577
Q ss_pred CCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCcc
Q psy8076 308 MGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTL 387 (737)
Q Consensus 308 ~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~ 387 (737)
++.++++++.+|++|..++...+...+..|.++++. .+++..+++.++++++|++.++|+++..|.......
T Consensus 233 ~~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~-- 304 (567)
T PLN02479 233 MNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICLR------QVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSE-- 304 (567)
T ss_pred CCCCCEEEEecchhhhhhHHHHHHHHhhcCceEecc------CCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhc--
Confidence 889999999999999998765444556666665543 268999999999999999999999999988754321
Q ss_pred ccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCC------CCCCCccCCCcCCCC
Q psy8076 388 GAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDT------VPPKYSTGLPFPGYD 461 (737)
Q Consensus 388 ~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~------~~~~~~~G~p~~g~~ 461 (737)
...+++++|.++++|+++++++.++|.+. +.++++.||+||+++.++.......... .......|.|.+|..
T Consensus 305 -~~~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~ 382 (567)
T PLN02479 305 -TILPLPRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLE 382 (567)
T ss_pred -ccccccceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcC
Confidence 11257899999999999999999998875 8899999999999754443211000000 000012333333321
Q ss_pred CCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCC--cceEEEEecCCCCCcccccc
Q psy8076 462 GKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPH--ELGRIVVKLPLPPGTMSTLY 538 (737)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g--~~GEL~i~g~~~~~~~~gy~ 538 (737)
.++|+| +++++++.+ +.|||+++|+ +++.|||
T Consensus 383 ------------------------------------------~~~i~d~~~~~~~~~~g~~~GEl~v~g~---~~~~GY~ 417 (567)
T PLN02479 383 ------------------------------------------GLDVVDTKTMKPVPADGKTMGEIVMRGN---MVMKGYL 417 (567)
T ss_pred ------------------------------------------ceeEEcCCCCcccCCCCCCceEEEEecc---chhhhhh
Confidence 145888 568888764 6899999999 9999999
Q ss_pred cChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcc
Q psy8076 539 KAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEI 618 (737)
Q Consensus 539 ~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~ 618 (737)
++++.+.+.|. +|||+|||+|++|++|+++|+||.||+||++|++|++.|||++|.+||.|.+++|++.+++..++.
T Consensus 418 ~~~~~t~~~~~---~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~ 494 (567)
T PLN02479 418 KNPKANEEAFA---NGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGES 494 (567)
T ss_pred cCcccccchhc---CCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchhcCce
Confidence 99999888773 689999999999999999999999999999999999999999999999999999999998877889
Q ss_pred eEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeE
Q psy8076 619 PFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLS 698 (737)
Q Consensus 619 ~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 698 (737)
+++++++..+ .. ........++|+++++++|+.|+.|..+
T Consensus 495 ~~~~v~~~~~------------~~----------------------------~~~~~~~~~~l~~~~~~~l~~~~~P~~~ 534 (567)
T PLN02479 495 PCAFVTLKPG------------VD----------------------------KSDEAALAEDIMKFCRERLPAYWVPKSV 534 (567)
T ss_pred eEEEEEecCc------------cc----------------------------ccchhhhHHHHHHHHHhhcccccCCceE
Confidence 9999998765 10 0011345678999999999999999988
Q ss_pred EEcCCCCCCCCchhhHHHHHHHHcCCCC
Q psy8076 699 TSVTGLPRTRSGKTARKSIVDMARNKPL 726 (737)
Q Consensus 699 ~~v~~lP~t~sGKi~R~~l~~~~~~~~~ 726 (737)
++ .+||+|++||++|+.|++.+.++..
T Consensus 535 ~~-~~iP~t~~gKv~r~~L~~~~~~~~~ 561 (567)
T PLN02479 535 VF-GPLPKTATGKIQKHVLRAKAKEMGP 561 (567)
T ss_pred Ee-ccCCCCCccCeeHHHHHHHHHhhCC
Confidence 76 6799999999999999998877443
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-61 Score=552.89 Aligned_cols=510 Identities=22% Similarity=0.280 Sum_probs=406.7
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEecCCHHHHHHHHHHHH
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAA-IGVSAGDRVLIYMPLIPEAIVSMLATVR 156 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~~~~e~vva~lA~~~ 156 (737)
.+.++|+++++.+ |+++|+++.+ +.+||+||.++++++|.+|.+ .|+++|++|+++++|++++++++|||++
T Consensus 24 ~l~~~l~~~a~~~-p~~~a~~~~~------~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 96 (560)
T PRK08974 24 SLVDMFEQAVARY-ADQPAFINMG------EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILR 96 (560)
T ss_pred cHHHHHHHHHHhC-CCCceEEECC------ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 4678899999887 9999999865 899999999999999999985 8999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccc--------
Q psy8076 157 LGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEE-------- 228 (737)
Q Consensus 157 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~-------- 228 (737)
+|++++|++|.++.+++.++++.++++++++++.. ...+.+..... ....++.........
T Consensus 97 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 165 (560)
T PRK08974 97 AGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNF---------AHTLEKVVFKT--PVKHVILTRMGDQLSTAKGTLVN 165 (560)
T ss_pred cCcEEeccCccCCHHHHHHHHHhcCceEEEEeccc---------cHHHHHHhhhc--CcceEEEeccccccccccccccc
Confidence 99999999999999999999999999999997642 12222222211 122222211000000
Q ss_pred ----------cccCCCCcccHHHHHhhcCC--CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHH
Q psy8076 229 ----------AELTPGYDILWDDALAQRLS--HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIA 296 (737)
Q Consensus 229 ----------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~ 296 (737)
..........+.+....... .......++++++++||||||| .||||+++|++++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG------------~PK~v~~t~~~l~~ 233 (560)
T PRK08974 166 FVVKYIKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTG------------VAKGAMLTHRNMLA 233 (560)
T ss_pred chhhhcccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCC------------CCcEEEEchHHHHH
Confidence 00000011122222221111 1112256789999999999999 99999999988766
Q ss_pred HHHHHHhhhh--cCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHH
Q psy8076 297 TLAWTMSVIY--NMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTA 374 (737)
Q Consensus 297 ~~~~~~~~~~--~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~ 374 (737)
+......... ....+++++..+|++|.+++....+..+..|+++++... ..++..+++.++++++|.+.++|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~p~~ 309 (560)
T PRK08974 234 NLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITN----PRDIPGFVKELKKYPFTAITGVNTL 309 (560)
T ss_pred HHHHHHHhhccccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecC----ccCHHHHHHHHHhcCcceEcCcHHH
Confidence 5543222211 134467888899999988876667778889998887643 2578899999999999999999999
Q ss_pred HHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccC
Q psy8076 375 LRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTG 454 (737)
Q Consensus 375 ~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G 454 (737)
++.|...... ...+++++|.+++||+++++.+.++|.+.+|.++++.||+||++..++.... .....+ +++|
T Consensus 310 ~~~l~~~~~~----~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~---~~~~~~-~~~G 381 (560)
T PRK08974 310 FNALLNNEEF----QELDFSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPY---DLDYYS-GSIG 381 (560)
T ss_pred HHHHHhCcCc----ccCCccceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccCceeeccCC---CCcccC-Cccc
Confidence 9999875432 3346789999999999999999999999889999999999999876655432 122233 6788
Q ss_pred CCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcc
Q psy8076 455 LPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTM 534 (737)
Q Consensus 455 ~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~ 534 (737)
.|++++. ++ |+|++|++++.|+.|||+|+|+ .++
T Consensus 382 ~~~~~~~-----~~--------------------------------------i~~~~~~~~~~g~~Gel~v~g~---~~~ 415 (560)
T PRK08974 382 LPVPSTE-----IK--------------------------------------LVDDDGNEVPPGEPGELWVKGP---QVM 415 (560)
T ss_pred cCcCCCE-----EE--------------------------------------EECCCCCCCCCCCceEEEEecC---Ccc
Confidence 8888887 77 9999999999999999999999 999
Q ss_pred cccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCC
Q psy8076 535 STLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPT 614 (737)
Q Consensus 535 ~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~ 614 (737)
.||+++++.+.+.+ .+|||+|||+++++.+|+++++||.||+|+++|.+|++.+||++|.+||+|.+++|++.+++.
T Consensus 416 ~gy~~~~~~~~~~~---~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~ 492 (560)
T PRK08974 416 LGYWQRPEATDEVI---KDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEV 492 (560)
T ss_pred hhhcCChhhhhhhh---hcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCC
Confidence 99999998887665 378999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCcee
Q psy8076 615 KGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAA 694 (737)
Q Consensus 615 ~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 694 (737)
.++.++++++.... . ...+++++++.+.++.++.
T Consensus 493 ~g~~~~~~v~~~~~------------~----------------------------------~~~~~l~~~l~~~l~~~~~ 526 (560)
T PRK08974 493 SGEAVKIFVVKKDP------------S----------------------------------LTEEELITHCRRHLTGYKV 526 (560)
T ss_pred cceEEEEEEECCCC------------C----------------------------------CCHHHHHHHHHhhcccccC
Confidence 88878887765432 0 0135788899999999999
Q ss_pred eeeEEEcCCCCCCCCchhhHHHHHHHHcCC
Q psy8076 695 FKLSTSVTGLPRTRSGKTARKSIVDMARNK 724 (737)
Q Consensus 695 p~~~~~v~~lP~t~sGKi~R~~l~~~~~~~ 724 (737)
|..+.++++||+|++||++|+.|++...++
T Consensus 527 P~~~~~~~~lP~t~~GK~~r~~l~~~~~~~ 556 (560)
T PRK08974 527 PKLVEFRDELPKSNVGKILRRELRDEARAK 556 (560)
T ss_pred CcEEEEhhhCCCCCCCcEeHHHHHHHHHhh
Confidence 999999999999999999999999987765
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-61 Score=548.21 Aligned_cols=507 Identities=23% Similarity=0.256 Sum_probs=402.3
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcC
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 158 (737)
+.++|+++++++ |+++|+++.+ +.+||.||+++++++|+.|.+.|+++||+|+++++|++++++++|||+++|
T Consensus 5 l~~~~~~~a~~~-p~~~a~~~~~------~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G 77 (533)
T PRK07798 5 IADLFEAVADAV-PDRVALVCGD------RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKAR 77 (533)
T ss_pred HHHHHHHHHHhC-CCceEEEECC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Confidence 678999999998 9999999875 899999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCccc
Q psy8076 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL 238 (737)
Q Consensus 159 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~ 238 (737)
++++|+++.++.+++.++++++++++++++... ...+.+....++ ..+.++.+...... . .......
T Consensus 78 ~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~--~-~~~~~~~ 144 (533)
T PRK07798 78 AVPVNVNYRYVEDELRYLLDDSDAVALVYEREF---------APRVAEVLPRLP-KLRTLVVVEDGSGN--D-LLPGAVD 144 (533)
T ss_pred eEEEecCcCCCHHHHHHHHhhcCCCEEEEchhh---------HHHHHHHhccCC-CccEEEEecCCccc--c-cCCcccc
Confidence 999999999999999999999999999998642 233333322222 44455555432111 0 1112345
Q ss_pred HHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHh--------hhhcC--
Q psy8076 239 WDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMS--------VIYNM-- 308 (737)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~--------~~~~~-- 308 (737)
+.+...............++.++++||||||| .||||+++|++++........ ...++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG------------~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (533)
T PRK07798 145 YEDALAAGSPERDFGERSPDDLYLLYTGGTTG------------MPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAK 212 (533)
T ss_pred HHHHHhccCCcCCCCCCCCCceEEEECCCCCC------------CCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcc
Confidence 66665443321211123345679999999999 999999999887654432111 11112
Q ss_pred ----CCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHH-HHHHcCC
Q psy8076 309 ----GQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALR-VIRREDK 383 (737)
Q Consensus 309 ----~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~-~l~~~~~ 383 (737)
..+++++..+|++|..++. .++.+|..|+++++.+.. ..++..+++.++++++|.+.++|..+. .+.....
T Consensus 213 ~~~~~~~~~~~~~~pl~~~~~~~-~~~~~l~~G~~~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~ 288 (533)
T PRK07798 213 RAAAGPGMRRFPAPPLMHGAGQW-AAFAALFSGQTVVLLPDV---RFDADEVWRTIEREKVNVITIVGDAMARPLLDALE 288 (533)
T ss_pred cccCCCCceEEEecchhhhhhHH-HHHHHHhcCceEEEecCC---CcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc
Confidence 5678999999999999965 689999999999998743 368999999999999999999987653 3333322
Q ss_pred CCccccCCCCCCccEEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCCCCCCCCccC--CCcCCC
Q psy8076 384 DSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTG--LPFPGY 460 (737)
Q Consensus 384 ~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G--~p~~g~ 460 (737)
. ....+++++|.+++||+++++++.+++.+.+ +..+++.||+||++...+.... .. . ...| .+.++.
T Consensus 289 ~---~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~---~~---~-~~~g~~~~~~~~ 358 (533)
T PRK07798 289 A---RGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVA---KG---A-VHTGGPRFTIGP 358 (533)
T ss_pred c---cccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCC---CC---C-ccCCCCccCCCc
Confidence 0 1334678999999999999999999999988 6889999999999654433211 00 1 1222 455555
Q ss_pred CCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcc--eEEEEecCCCCCcccccc
Q psy8076 461 DGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHEL--GRIVVKLPLPPGTMSTLY 538 (737)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~--GEL~i~g~~~~~~~~gy~ 538 (737)
. ++ |+|++|++++.|+. |+|+.+ + .++.||+
T Consensus 359 ~-----~~--------------------------------------i~~~~~~~~~~g~~~~g~l~~~-~---~~~~gy~ 391 (533)
T PRK07798 359 R-----TV--------------------------------------VLDEDGNPVEPGSGEIGWIARR-G---HIPLGYY 391 (533)
T ss_pred e-----EE--------------------------------------EECCCCCCCCCCCCCeeEEEee-c---Ccccccc
Confidence 5 55 99999999999988 777655 4 7899999
Q ss_pred cChhhhHHhhcc-CCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCc
Q psy8076 539 KAPQRFMKIYFT-KFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617 (737)
Q Consensus 539 ~~~~~~~~~~~~-~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~ 617 (737)
++++.+.+.|.. +..+||+|||++++|+||++++.||.||+||++|++|++.|||++|.++|.|.+++|++.+++..++
T Consensus 392 ~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~ 471 (533)
T PRK07798 392 KDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQ 471 (533)
T ss_pred CChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcccCc
Confidence 999988877643 2345999999999999999999999999999999999999999999999999999999999887788
Q ss_pred ceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeee
Q psy8076 618 IPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKL 697 (737)
Q Consensus 618 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 697 (737)
.++++++++++ . ....++|+++++++|+.|++|..
T Consensus 472 ~~~~~v~~~~~------------~---------------------------------~~~~~~l~~~l~~~l~~~~~P~~ 506 (533)
T PRK07798 472 EVVAVVQLREG------------A---------------------------------RPDLAELRAHCRSSLAGYKVPRA 506 (533)
T ss_pred eEEEEEEECCC------------C---------------------------------CCCHHHHHHHHhhhcccCCCCeE
Confidence 89999887754 1 11357899999999999999999
Q ss_pred EEEcCCCCCCCCchhhHHHHHHHHcC
Q psy8076 698 STSVTGLPRTRSGKTARKSIVDMARN 723 (737)
Q Consensus 698 ~~~v~~lP~t~sGKi~R~~l~~~~~~ 723 (737)
++++++||+|++||++|+.|++++.+
T Consensus 507 i~~~~~iP~t~~GK~~~~~~~~~~~~ 532 (533)
T PRK07798 507 IWFVDEVQRSPAGKADYRWAKEQAAE 532 (533)
T ss_pred EEEcccCCCCCcchhhHHHHhhhhcc
Confidence 99999999999999999999999865
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=582.84 Aligned_cols=503 Identities=16% Similarity=0.189 Sum_probs=379.3
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
.+.++|+++++++ ||++|+++.+ +.+||+||+++++++|+.|.++|+++||+|+|+++|++++++++|||+++
T Consensus 448 sl~~ll~~~a~~~-pd~~Al~~~~------~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~a 520 (994)
T PRK07868 448 SLGRIIAEQARDA-PKGEFLLFDG------RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRL 520 (994)
T ss_pred cHHHHHHHHHHHC-CCCeEEEeCC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhc
Confidence 4678999999998 9999999875 78999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCC-Cc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPG-YD 236 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~-~~ 236 (737)
|++++|++|. .++.+++++++++++|+++... ..+. . ...+++++............. ..
T Consensus 521 Gav~vpl~p~---~~l~~il~~s~~~~li~~~~~~---------~~~~---~----~~~~iiv~~~~~~~~~~~~~~~~~ 581 (994)
T PRK07868 521 GAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNL---------EAAR---Q----LPGRVLVLGGGESRDLDLPDDADV 581 (994)
T ss_pred CCEEEEeCCc---hhHHHHHhccCCeEEEEChHHH---------HHHH---h----cCceEEEecCCccccccCCcchhh
Confidence 9999999985 6899999999999999976421 1111 1 123455543210000000000 01
Q ss_pred ccHHHHHhhcCC----CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCc
Q psy8076 237 ILWDDALAQRLS----HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDD 312 (737)
Q Consensus 237 ~~~~~~~~~~~~----~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d 312 (737)
..+.+....... ....+..+++++||+|| |||| .||++.++|.+...... .....++++.+|
T Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStg------------tpKpk~vt~~~~~~~~~-~~~~~~~l~~~d 647 (994)
T PRK07868 582 IDMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGG------------ELVAKQITNYRWALSAF-GTASAAALDRRD 647 (994)
T ss_pred hhhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCC------------CcCcEEEehHHHHHHHH-hhhhhcCCCCCC
Confidence 111111111000 01112246899999999 5777 66666667755443332 234457889999
Q ss_pred EEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCC
Q psy8076 313 VWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYS 392 (737)
Q Consensus 313 ~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~ 392 (737)
++++.+|++|++++...++.++..|+++++.+ .+++..+++.|++++||+++++|++++.|.+.... ...+
T Consensus 648 ~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~-----~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~----~~~~ 718 (994)
T PRK07868 648 TVYCLTPLHHESGLLVSLGGAVVGGSRIALSR-----GLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAF----VLHG 718 (994)
T ss_pred eEEEecChHHHhHHHHHHHHHhccceEEEecC-----CCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCC----ccCC
Confidence 99999999999997665556666666666654 36899999999999999999999999999875332 3346
Q ss_pred CCCccEEEeecCCCCHHHHHHHHHhcC-CcccccccccccccccccccccCCCCCCCCCCccCCCcCCC-CCCcceeeee
Q psy8076 393 TDSLRYLFVAGEHCDHETKNWAEKSFN-VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGY-DGKYVNIVML 470 (737)
Q Consensus 393 l~~Lr~i~~gGe~l~~~~~~~~~~~~~-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~-~~~~~~~~~~ 470 (737)
+++||.++ |+.+++++++++.+.++ .+++|.||+||++...+ .. ...++ +++|+|++|+ + ++..
T Consensus 719 ~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~-~~-----~~~~~-~svG~p~pg~~~-----v~i~ 784 (994)
T PRK07868 719 NHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLA-NV-----SGAKI-GSKGRPLPGAGR-----VELA 784 (994)
T ss_pred CCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeeccccccccc-cc-----CCCCC-cccCCccCCCCc-----eeEE
Confidence 77899876 34499999999999887 78999999999875432 11 12344 7899999997 4 3310
Q ss_pred ccccCccccccccccccccCCCCCCCCcccccceEEEEcCCC--CccCCCcceEEEEecCCCCCcccccccChhhhH-Hh
Q psy8076 471 NWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDG--SECEPHELGRIVVKLPLPPGTMSTLYKAPQRFM-KI 547 (737)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g--~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~-~~ 547 (737)
.. +.. ....++|++| +.++.|+.|||+++|+ +. + +++.+. ..
T Consensus 785 ~~-d~~--------------------------~g~li~d~~G~~~~~~~ge~Gel~~~~~---~~----~-~p~~t~~~~ 829 (994)
T PRK07868 785 AY-DPE--------------------------HDLILEDDRGFVRRAEVNEVGVLLARAR---GP----I-DPTASVKRG 829 (994)
T ss_pred Ee-cCc--------------------------CCceeecCCceEEEcCCCCceEEEEecC---CC----C-ChhhhhHhc
Confidence 00 000 0011567777 6789999999999998 32 2 344332 23
Q ss_pred hccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeec
Q psy8076 548 YFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKR 627 (737)
Q Consensus 548 ~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~ 627 (737)
+|.+.+|||+|||+|++|+||+|+|+||+||+||++|.+|+|.|||++|.+||.|.+|+|++++++. ++.++|+|++++
T Consensus 830 ~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~-~~~~~a~Vv~~~ 908 (994)
T PRK07868 830 VFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVGG-RQLAVAAVTLRP 908 (994)
T ss_pred ccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCCC-CceEEEEEEeCC
Confidence 4444579999999999999999999999999999999999999999999999999999999998875 678999999876
Q ss_pred CCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCC
Q psy8076 628 IPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRT 707 (737)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t 707 (737)
+ . ....++|++++++ ++.|++|+.|+++++||+|
T Consensus 909 ~------------~---------------------------------~~~~~~L~~~l~~-l~~y~vP~~i~~v~~lP~T 942 (994)
T PRK07868 909 G------------A---------------------------------AITAADLTEALAS-LPVGLGPDIVHVVPEIPLS 942 (994)
T ss_pred C------------C---------------------------------cCCHHHHHHHHHh-CCCCcCCeEEEEeCCCCCC
Confidence 4 1 0124678889985 9999999999999999999
Q ss_pred CCchhhHHHHHHHHcCCC
Q psy8076 708 RSGKTARKSIVDMARNKP 725 (737)
Q Consensus 708 ~sGKi~R~~l~~~~~~~~ 725 (737)
+|||++|++|++....++
T Consensus 943 ~sGKi~r~~L~~~~lp~p 960 (994)
T PRK07868 943 ATYRPTVSALRAAGIPKP 960 (994)
T ss_pred ccccEehHHHHhcCCCCC
Confidence 999999999998877654
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-61 Score=543.45 Aligned_cols=483 Identities=24% Similarity=0.307 Sum_probs=393.8
Q ss_pred eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEE
Q psy8076 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIA 187 (737)
Q Consensus 108 ~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~ 187 (737)
+.+||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|++++|+++.++.+++..++++++++++++
T Consensus 10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~ 89 (502)
T PRK08276 10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV 89 (502)
T ss_pred cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHHHhhcCCCCCccccCCCCeEEEecCC
Q psy8076 188 ASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSG 267 (737)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG 267 (737)
++... ..+.+.....+...+.+++.... ......+.+....... ......++.++++||||
T Consensus 90 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~--~~~~~~~~~a~i~~TSG 150 (502)
T PRK08276 90 SAALA---------DTAAELAAELPAGVPLLLVVAGP--------VPGFRSYEEALAAQPD--TPIADETAGADMLYSSG 150 (502)
T ss_pred ccchh---------hHHHHHhhhccccccEEEEeCCC--------CCccccHHHHHhcCCC--CCCCCCCcceEEEECCC
Confidence 87532 22222222222133444443211 0112334444332211 12235577899999999
Q ss_pred CCCCCCcccCcccCCCCceeeccCchhHHHHH-----HHHhhhhcCCCCcEEEEecccccccchhhhhhhccccCcEEEE
Q psy8076 268 TTGKPQGCSELRSEDQPKGILRPVGGHIATLA-----WTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVM 342 (737)
Q Consensus 268 TTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~-----~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl 342 (737)
||| .||||+++|.+...... ......+....++++++.+|++|..++.. .+.++..|+++++
T Consensus 151 tTG------------~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~ 217 (502)
T PRK08276 151 TTG------------RPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRF-GMSALALGGTVVV 217 (502)
T ss_pred CCC------------CCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHH-HHHHHhccceEEE
Confidence 999 99999999876543221 11112222346789999999999988665 4678999999988
Q ss_pred ecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcc
Q psy8076 343 YEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTM 422 (737)
Q Consensus 343 ~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i 422 (737)
.+. +++..+++.++++++|++.++|+++..+.+...... ...+++++|.+++||++++.++.+++.+.++..+
T Consensus 218 ~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~ 290 (502)
T PRK08276 218 MEK-----FDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVR--ARYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPII 290 (502)
T ss_pred cCC-----CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccC--CCCCcccceEEEecCCCCCHHHHHHHHHHhCcHh
Confidence 763 689999999999999999999999999987653322 3457889999999999999999999999889899
Q ss_pred cccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCccccc
Q psy8076 423 LNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTS 502 (737)
Q Consensus 423 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (737)
++.||+||++..++... ......+ +++|+|+ +.. ++
T Consensus 291 ~~~yG~tE~~~~~~~~~---~~~~~~~-~~~G~~~-~~~-----~~---------------------------------- 326 (502)
T PRK08276 291 HEYYASSEGGGVTVITS---EDWLAHP-GSVGKAV-LGE-----VR---------------------------------- 326 (502)
T ss_pred hhhcccccccceeEecC---ccccccC-CCcceec-ccE-----EE----------------------------------
Confidence 99999999987544322 1112233 6778888 656 66
Q ss_pred ceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEee
Q psy8076 503 VEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINV 582 (737)
Q Consensus 503 ~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~ 582 (737)
|+|+++.+++.|+.|||+++|+ +++.||+++++.+...+.. +|||+|||+++++++|.+++.||.||+||+
T Consensus 327 ----i~d~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~~~~--~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~ 397 (502)
T PRK08276 327 ----ILDEDGNELPPGEIGTVYFEMD---GYPFEYHNDPEKTAAARNP--HGWVTVGDVGYLDEDGYLYLTDRKSDMIIS 397 (502)
T ss_pred ----EECCCCCCCcCCCceEEEEECC---CccchhcCCHHHHHHHhcC--CCceeecceEEEcCCcCEEEeccCcceEEe
Confidence 9999999999999999999999 8899999999988887754 599999999999999999999999999999
Q ss_pred CcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCC
Q psy8076 583 AGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPY 662 (737)
Q Consensus 583 ~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (737)
+|++|++.|||.+|+++|+|.+++|++..++..++.+++++++++. .
T Consensus 398 ~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~------------~--------------------- 444 (502)
T PRK08276 398 GGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADG------------A--------------------- 444 (502)
T ss_pred CCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCC------------C---------------------
Confidence 9999999999999999999999999999998889999999998765 1
Q ss_pred CCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHHHcCC
Q psy8076 663 GPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNK 724 (737)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~~ 724 (737)
.....+.+++++.++++|+.++.|..++++++||+|++||++|+.|++.+..+
T Consensus 445 ---------~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 497 (502)
T PRK08276 445 ---------DAGDALAAELIAWLRGRLAHYKCPRSIDFEDELPRTPTGKLYKRRLRDRYWEG 497 (502)
T ss_pred ---------CCChhhHHHHHHHHHhhccCCCCCcEEEEecCCCCCcccchhHHHHHHHHHhh
Confidence 11234567899999999999999999999999999999999999999997653
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-61 Score=539.42 Aligned_cols=428 Identities=18% Similarity=0.196 Sum_probs=351.2
Q ss_pred EEcHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEE
Q psy8076 109 KVTYAELQEQVSLLAGSLAAIGV-SAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIA 187 (737)
Q Consensus 109 ~~Ty~eL~~~v~~lA~~L~~~Gv-~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~ 187 (737)
-+.|+||+++++++|++|+++|+ ++|++|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~ 98 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG 98 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence 34799999999999999999988 57999999999999999999999999999999999999999999999999999998
Q ss_pred cCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHHHhhcCCCCCccccCCCCeEEEecCC
Q psy8076 188 ASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSG 267 (737)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG 267 (737)
++..... . . . ... . ......++++++++||||
T Consensus 99 ~~~~~~~--------------------~-----~-~------------~~~-------~---~~~~~~~~~~~~i~~TSG 130 (452)
T PRK07445 99 LDQLKLS--------------------H-----P-P------------PLP-------S---QGILPNLETGWIMIPTGG 130 (452)
T ss_pred cCccccc--------------------c-----C-C------------CCC-------c---cccCCCCCCcEEEEeCCC
Confidence 7642100 0 0 0 000 0 001135689999999999
Q ss_pred CCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCC
Q psy8076 268 TTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKP 347 (737)
Q Consensus 268 TTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~ 347 (737)
||| .||||+++|++++..... ....+++.+ ++.++.+|++|.+|+. .++.+|..|+++++.+..
T Consensus 131 TTG------------~PKgV~~t~~~l~~~~~~-~~~~~~~~~-~~~~~~~Pl~h~~g~~-~~~~~l~~G~t~v~~~~~- 194 (452)
T PRK07445 131 SSG------------QIRFAIHTWETLTASVQG-FQRYFQLQQ-VNSFCVLPLYHVSGLM-QFMRSFLTGGKLVILPYK- 194 (452)
T ss_pred CCC------------CCcEEEechHHHHHHHHH-HHHHhcCCC-CceEeccCchhhhhHH-HHHHHHHcCCeEEEcChH-
Confidence 999 999999999886655443 344456654 4678899999999864 478899999999997631
Q ss_pred CCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCccccccc
Q psy8076 348 DRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWW 427 (737)
Q Consensus 348 ~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG 427 (737)
..........++++|++.++|++++.+.+.. ...+++||.+++||+++++++.+.+.+ ++.++++.||
T Consensus 195 ----~~~~~~~~~~~~~~t~~~~vP~~l~~l~~~~-------~~~l~~l~~i~~gG~~l~~~~~~~~~~-~~~~l~~~YG 262 (452)
T PRK07445 195 ----RLKSGQELPPNPSDFFLSLVPTQLQRLLQLR-------PQWLAQFRTILLGGAPAWPSLLEQARQ-LQLRLAPTYG 262 (452)
T ss_pred ----hccchhhhhhhcCceEEEehHHHHHHHHhhC-------hhhhhcceEEEECCccCCHHHHHHHHh-cCCeEecCcc
Confidence 1122233445789999999999999987632 224789999999999999999998875 5889999999
Q ss_pred ccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEE
Q psy8076 428 QTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRI 507 (737)
Q Consensus 428 ~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 507 (737)
+||++..++.... ......+ .++|+|+++++ ++ |
T Consensus 263 ~TE~~~~~~~~~~--~~~~~~~-~~~G~~~p~~~-----v~--------------------------------------i 296 (452)
T PRK07445 263 MTETASQIATLKP--DDFLAGN-NSSGQVLPHAQ-----IT--------------------------------------I 296 (452)
T ss_pred hhhhcccccccCc--hhhccCC-CcCCccCCCCe-----EE--------------------------------------E
Confidence 9999865443211 1111223 67888888887 66 7
Q ss_pred EcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEe
Q psy8076 508 IRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRL 587 (737)
Q Consensus 508 vd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv 587 (737)
+ .|+.|||+|+|| +++.||+++.. ..+|||+|||+|++|+||+++|.||.||+||++|++|
T Consensus 297 ~--------~g~~Gel~v~g~---~~~~gY~~~~~--------~~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V 357 (452)
T PRK07445 297 P--------ANQTGNITIQAQ---SLALGYYPQIL--------DSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENV 357 (452)
T ss_pred c--------CCCcceEEEeCC---ccchhhcCCcc--------CCCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEE
Confidence 6 467899999999 99999998642 2378999999999999999999999999999999999
Q ss_pred chHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcc
Q psy8076 588 STSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISS 667 (737)
Q Consensus 588 ~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (737)
+|.|||++|.+||+|.+|+|++.+++..|+.++++++..+. .
T Consensus 358 ~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~------------~-------------------------- 399 (452)
T PRK07445 358 YPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDP------------S-------------------------- 399 (452)
T ss_pred CHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCC------------C--------------------------
Confidence 99999999999999999999999998889999999987654 1
Q ss_pred cccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHHHcC
Q psy8076 668 IYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARN 723 (737)
Q Consensus 668 ~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~ 723 (737)
...++++++++++|+.|++|+.++++++||+|++||++|+.|++++.+
T Consensus 400 --------~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 447 (452)
T PRK07445 400 --------ISLEELKTAIKDQLSPFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQ 447 (452)
T ss_pred --------CCHHHHHHHHHHhCCcccCCeEEEEecCCCCCCCcccCHHHHHHHHHH
Confidence 024679999999999999999999999999999999999999998865
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-60 Score=540.34 Aligned_cols=490 Identities=23% Similarity=0.319 Sum_probs=394.1
Q ss_pred eEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHH
Q psy8076 95 VALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELC 174 (737)
Q Consensus 95 ~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~ 174 (737)
.|++..+ +.+||.||.++++++|++|.++|+++|++|+++++|++++++++|||+++|++++|+++.++.+++.
T Consensus 3 ~~~~~~~------~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~ 76 (509)
T PRK12406 3 ATIISGD------RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIA 76 (509)
T ss_pred eEEEECC------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHH
Confidence 4566654 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEeccc--------ccccccCCCCcccHHHHHhhc
Q psy8076 175 ARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRC--------VEEAELTPGYDILWDDALAQR 246 (737)
Q Consensus 175 ~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 246 (737)
.+++++++++++++..... .+.+ ..+... .++...... .............|.+.....
T Consensus 77 ~~l~~~~~~~i~~~~~~~~---------~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (509)
T PRK12406 77 YILEDSGARVLIAHADLLH---------GLAS---ALPAGV-TVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQ 143 (509)
T ss_pred HHHhccCCcEEEEccchhh---------hhhh---hhhccc-ceeecccccccccccccccccccCCCCccCHHHHhccc
Confidence 9999999999999765321 1111 111011 111111000 000001122334555554322
Q ss_pred CCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHH--HHHHhhhhcCCCCcEEEEeccccccc
Q psy8076 247 LSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATL--AWTMSVIYNMGQDDVWWTASDMGWVV 324 (737)
Q Consensus 247 ~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~--~~~~~~~~~~~~~d~~l~~~~~~~~~ 324 (737)
. ......++++++++||||||| .||+|+++|.++.... .......+++..+++++...|++|..
T Consensus 144 ~--~~~~~~~~~~a~i~~TSGtTG------------~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 209 (509)
T PRK12406 144 E--PYDGPPVPQPQSMIYTSGTTG------------HPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSA 209 (509)
T ss_pred C--ccCCCCCCCceEEEECCCCCC------------CCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccc
Confidence 1 222345789999999999999 9999999876543322 22344567889999999999999998
Q ss_pred chhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecC
Q psy8076 325 GHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGE 404 (737)
Q Consensus 325 g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe 404 (737)
+..+ .+.++..|+++++.+ ..++..+++.++++++|++.++|++++.|........ ...+++++|.+++||+
T Consensus 210 ~~~~-~~~~~~~g~~~~~~~-----~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~~~l~~v~~gg~ 281 (509)
T PRK12406 210 PNAY-GLRAGRLGGVLVLQP-----RFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVR--AKYDVSSLRHVIHAAA 281 (509)
T ss_pred hHHH-HHHHHhhheEEEEcc-----CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhc--ccCCCCceeEEEEcCC
Confidence 8665 456788899998875 2689999999999999999999999999887543211 3456789999999999
Q ss_pred CCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccc
Q psy8076 405 HCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILP 484 (737)
Q Consensus 405 ~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (737)
++++++.+++.+.++..+++.||+||++..++... ......+ +++|.|++++. ++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~---~~~~~~~-~~~G~~~~~~~-----~~---------------- 336 (509)
T PRK12406 282 PCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATS---EDALSHP-GTVGKAAPGAE-----LR---------------- 336 (509)
T ss_pred CCCHHHHHHHHHHcCCcEEeeccccccCceEecCc---ccccccC-CCcCccCCCcE-----EE----------------
Confidence 99999999999999999999999999997544321 1222344 67888988887 77
Q ss_pred cccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCccc-ccccChhhhHHhhccCCCCeeecCceEE
Q psy8076 485 ESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMS-TLYKAPQRFMKIYFTKFPGYYDTMDAGY 563 (737)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~-gy~~~~~~~~~~~~~~~~g~~~TGDl~~ 563 (737)
|+|+++++++.|+.|||+++|+ +++. +|+++++.+.... .+|||+|||+++
T Consensus 337 ----------------------i~d~~~~~~~~g~~Gel~v~~~---~~~~~~y~~~~~~~~~~~---~~~~~~TGD~~~ 388 (509)
T PRK12406 337 ----------------------FVDEDGRPLPQGEIGEIYSRIA---GNPDFTYHNKPEKRAEID---RGGFITSGDVGY 388 (509)
T ss_pred ----------------------EECCCCCCCCCCCceEEEEECC---ccccccccCCchhccccc---CCCCeEEccEEE
Confidence 9999999999999999999998 6654 8999888765532 378999999999
Q ss_pred EecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccc
Q psy8076 564 YDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGK 643 (737)
Q Consensus 564 ~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~ 643 (737)
++.||++++.||.||+||++|++|++.|||+.|.++|+|.+++|++.+++..++.+++++++.+. .
T Consensus 389 ~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~------------~-- 454 (509)
T PRK12406 389 LDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPG------------A-- 454 (509)
T ss_pred EcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCC------------C--
Confidence 99999999999999999999999999999999999999999999999988778889999988654 1
Q ss_pred cCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHHHcC
Q psy8076 644 LERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARN 723 (737)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~ 723 (737)
....++|++.+++.++.|++|..++++++||+|++||++|+.|++.+.+
T Consensus 455 -------------------------------~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~r~~L~~~~~~ 503 (509)
T PRK12406 455 -------------------------------TLDEADIRAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRLRDPYWA 503 (509)
T ss_pred -------------------------------CCCHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccchhHHHHHHHHHh
Confidence 0125789999999999999999999999999999999999999998765
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-61 Score=551.55 Aligned_cols=533 Identities=18% Similarity=0.181 Sum_probs=394.6
Q ss_pred hHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHH
Q psy8076 77 NACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVR 156 (737)
Q Consensus 77 n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~ 156 (737)
..+.++|+..+..+ |+.+++ ... .+..+.+||+||+.+++++|++|.++|+++||+|+++++|++++++++|||++
T Consensus 21 ~~~~~~~~~~~~~~-~~~~~~-~~~--~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~ 96 (579)
T PRK09192 21 PTLVEALDYAALGE-AGMNFY-DRR--GQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQY 96 (579)
T ss_pred hhHHHHHHHhhccC-CceEEE-ecC--CCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHH
Confidence 47899999888876 766544 322 22358899999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCC-------HHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEeccccccc
Q psy8076 157 LGAIHSVVFGGFA-------ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEA 229 (737)
Q Consensus 157 ~G~~~vpl~~~~~-------~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~ 229 (737)
+|++++|+++..+ .+++.++++.++++++++++.. ...+....... ...++.
T Consensus 97 ~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~---------~~~~~~~~~~~----~~~~~~-------- 155 (579)
T PRK09192 97 AGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDEL---------LPWVNEATHGN----PLLHVL-------- 155 (579)
T ss_pred cCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHH---------HHHHHHhhccc----ccccee--------
Confidence 9999999986543 6899999999999999998642 12222221111 111111
Q ss_pred ccCCCCcccHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcC
Q psy8076 230 ELTPGYDILWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNM 308 (737)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~ 308 (737)
.+.++...... .......+++++|++||||||| .||||+++|++++.+........+++
T Consensus 156 --------~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PKgv~~sh~~~~~~~~~~~~~~~~~ 215 (579)
T PRK09192 156 --------SHAWFKALPEADVALPRPTPDDIAYLQYSSGSTR------------FPRGVIITHRALMANLRAISHDGLKV 215 (579)
T ss_pred --------ehhhhcccCCCccccCCCCCCCeEEEEecCCCCC------------CCceEEeeHHHHHHHHHHHHhhcccC
Confidence 11111111111 1122356789999999999999 99999999998877666544437889
Q ss_pred CCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccc
Q psy8076 309 GQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLG 388 (737)
Q Consensus 309 ~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~ 388 (737)
.++|+++.++|++|.+|+...++.++..|+++++...... ..++..+++.+.++++|+++.+|.++..+....... ..
T Consensus 216 ~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~-~~ 293 (579)
T PRK09192 216 RPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDF-ARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK-DL 293 (579)
T ss_pred CCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHH-HHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc-cc
Confidence 9999999999999999987767788999999987653221 236889999999999998887777666655432211 01
Q ss_pred cCCCCCCccEEEeecCCCCHHHHHHHHHhcC------CcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCC
Q psy8076 389 AQYSTDSLRYLFVAGEHCDHETKNWAEKSFN------VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDG 462 (737)
Q Consensus 389 ~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~------~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~ 462 (737)
...+++++|.+++||+++++++.+.+.+.++ ..+++.||+||++..++..... ..... ..++.
T Consensus 294 ~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~---~~~~~-~~~~~------- 362 (579)
T PRK09192 294 AELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLG---SGIVV-EEVDR------- 362 (579)
T ss_pred cccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCC---CCceE-EEEcH-------
Confidence 3357889999999999999999999888763 2588999999998665542210 00000 00000
Q ss_pred CcceeeeeccccCccccccccc-cccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccCh
Q psy8076 463 KYVNIVMLNWLDGRAHCVRILP-ESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAP 541 (737)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~ 541 (737)
...........+ .........+..|.+.++++++|+|++++.++.|+.|||+|+|+ +++.|||++
T Consensus 363 ----------~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d~~~~~~~~g~~Gel~i~g~---~~~~gY~~~- 428 (579)
T PRK09192 363 ----------DRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRNEAGMPLPERVVGHICVRGP---SLMSGYFRD- 428 (579)
T ss_pred ----------HHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEECCCCCCCCCCCEEEEEecCC---chhhhhcCC-
Confidence 000000000000 00000111234566777777779999999999999999999999 999999999
Q ss_pred hhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcc--eeEEecccCCCCCcce
Q psy8076 542 QRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVG--DTAVIGVPEPTKGEIP 619 (737)
Q Consensus 542 ~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~--~a~vv~~~~~~~~~~~ 619 (737)
+.+.+.+. .+|||+|||+|++ .+|+++|+||.||+||++|++|+|.|||++|++||+|. +|+|++++++. ++.+
T Consensus 429 ~~~~~~~~--~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~-~~~~ 504 (579)
T PRK09192 429 EESQDVLA--ADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKI 504 (579)
T ss_pred cccccccc--CCceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCC-CeeE
Confidence 55555443 3789999999999 99999999999999999999999999999999999998 89999998875 5578
Q ss_pred EEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcC-CceeeeeE
Q psy8076 620 FCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIG-PIAAFKLS 698 (737)
Q Consensus 620 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~p~~~ 698 (737)
+++++.... .....++|++++++.+. .+++|..+
T Consensus 505 ~~~v~~~~~---------------------------------------------~~~~~~~l~~~~~~~l~~~~~~~~~i 539 (579)
T PRK09192 505 VLLVQCRIS---------------------------------------------DEERRGQLIHALAALVRSEFGVEAAV 539 (579)
T ss_pred EEEEEecCC---------------------------------------------ChHHHHHHHHHHHHHHHHHhCCCceE
Confidence 888876543 12234567777777664 57788777
Q ss_pred EEcC--CCCCCCCchhhHHHHHHHHcCCCCCchh
Q psy8076 699 TSVT--GLPRTRSGKTARKSIVDMARNKPLRVRL 730 (737)
Q Consensus 699 ~~v~--~lP~t~sGKi~R~~l~~~~~~~~~~~~~ 730 (737)
+++. +||+|++||++|++|++++..+.+.+..
T Consensus 540 ~~~~~~~lP~t~~GKv~R~~l~~~~~~~~~~~~~ 573 (579)
T PRK09192 540 ELVPPHSLPRTSSGKLSRAKAKKRYLSGAFASLD 573 (579)
T ss_pred EEeCCCCcCCCCCcchhHHHHHHHHHcCCCCccc
Confidence 7775 8999999999999999999998776553
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-61 Score=556.48 Aligned_cols=525 Identities=18% Similarity=0.176 Sum_probs=381.3
Q ss_pred hhHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHH
Q psy8076 76 INACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATV 155 (737)
Q Consensus 76 ~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~ 155 (737)
..++.++|+++++++ ||++|+++.+...+.++.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+
T Consensus 48 ~~~l~~~l~~~a~~~-pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 126 (624)
T PRK12582 48 PRSIPHLLAKWAAEA-PDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAM 126 (624)
T ss_pred ccCHHHHHHHHHHHC-CCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHH
Confidence 445789999999988 9999998764223446899999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEecCCCCCH-----HHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccc
Q psy8076 156 RLGAIHSVVFGGFAA-----RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAE 230 (737)
Q Consensus 156 ~~G~~~vpl~~~~~~-----~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~ 230 (737)
++|++++|++|.++. +++.+++++++++++|+++.. .....+..+......++++....
T Consensus 127 ~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~-----------~~~~~~~~~~~~~~~~i~~~~~~----- 190 (624)
T PRK12582 127 QAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGA-----------PFARALAALDLLDVTVVHVTGPG----- 190 (624)
T ss_pred HcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHH-----------HHHHHHHhhhhcCceEEEEcCCC-----
Confidence 999999999999885 899999999999999997531 11111111111111233332210
Q ss_pred cCCCCcccHHHHHhhcCCC----CCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhh
Q psy8076 231 LTPGYDILWDDALAQRLSH----RCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIY 306 (737)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~ 306 (737)
.......+.++....... ......++++++|+||||||| .||||+++|++++.+.... ...+
T Consensus 191 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG------------~PKgV~~th~~l~~~~~~~-~~~~ 256 (624)
T PRK12582 191 -EGIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTG------------MPKAVINTQRMMCANIAMQ-EQLR 256 (624)
T ss_pred -cccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCC------------CCceEEeeHHHHHHHHHHH-HHhc
Confidence 001123344443322111 112346789999999999999 9999999998877665443 3334
Q ss_pred cCCC---CcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCC
Q psy8076 307 NMGQ---DDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDK 383 (737)
Q Consensus 307 ~~~~---~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~ 383 (737)
.... +++++.++|++|++|+...++.+|..|+++++.++.+. ......+++.++++++|+++++|++++.|.+...
T Consensus 257 ~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~-~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~ 335 (624)
T PRK12582 257 PREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPL-PGMFEETIRNLREISPTVYGNVPAGYAMLAEAME 335 (624)
T ss_pred cccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcc-cchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHh
Confidence 4443 57999999999999987777889999999999764221 1123456778899999999999999998876432
Q ss_pred CCccccCCCCCCccEEEeecCCCCHHHHHHHHHhc----C--CcccccccccccccccccccccCCCCCCCCCCccCCCc
Q psy8076 384 DSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF----N--VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPF 457 (737)
Q Consensus 384 ~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~----~--~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~ 457 (737)
........++++||.+++||+++++++.++|.+.+ | .++++.||+||++..++.... ...++ +++|+|+
T Consensus 336 ~~~~~~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~----~~~~~-~svG~p~ 410 (624)
T PRK12582 336 KDDALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHW----DTERV-GLIGLPL 410 (624)
T ss_pred hCHHHHHHHhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccC----CCCCC-CCCCcCC
Confidence 21101223468999999999999999999998753 3 579999999999865543221 12334 7889999
Q ss_pred CCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCccccc
Q psy8076 458 PGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTL 537 (737)
Q Consensus 458 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy 537 (737)
+|++ ++ |+ +.|+.|||+|+|| +++.||
T Consensus 411 pg~~-----v~--------------------------------------i~-------~~G~~GEl~vrg~---~v~~GY 437 (624)
T PRK12582 411 PGVE-----LK--------------------------------------LA-------PVGDKYEVRVKGP---NVTPGY 437 (624)
T ss_pred CCcE-----EE--------------------------------------Ec-------cCCCceEEEEECC---cccccc
Confidence 9988 66 64 4578999999999 999999
Q ss_pred ccChhhhHHhhccCCCCeeecCceEEE-e---cCceEEEEeecCCeEee-CcEEechHHHH--HHHhcCCCcceeEEecc
Q psy8076 538 YKAPQRFMKIYFTKFPGYYDTMDAGYY-D---ENGYIYVTARDDDVINV-AGHRLSTSALE--DVVLSHPDVGDTAVIGV 610 (737)
Q Consensus 538 ~~~~~~~~~~~~~~~~g~~~TGDl~~~-~---~dG~l~i~GR~dd~Ik~-~G~rv~~~eIE--~~l~~~p~V~~a~vv~~ 610 (737)
|++++.+.+.|. .+|||+|||+|++ | ++|+++|+||+||+||+ +|++|++.+|| .++.+||.|.+|+|+|+
T Consensus 438 ~~~p~~t~~~f~--~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~ 515 (624)
T PRK12582 438 HKDPELTAAAFD--EEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQ 515 (624)
T ss_pred cCCccchhhhcC--ccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcC
Confidence 999999877663 3799999999998 4 46999999999999996 59999998885 68889999999999999
Q ss_pred cCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHH---HH
Q psy8076 611 PEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELV---RE 687 (737)
Q Consensus 611 ~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l---~~ 687 (737)
+++. +.++|++.......+.. .+... .......+++.+.+++.| ++
T Consensus 516 ~~~~----~g~lv~p~~~~~~~~~~------------------------~~~~~---~~~~~~~~~l~~~~~~~l~~~~~ 564 (624)
T PRK12582 516 DRAF----IGLLAWPNPAACRQLAG------------------------DPDAA---PEDVVKHPAVLAILREGLSAHNA 564 (624)
T ss_pred CCCc----EEEEEecCHHHHHHHHh------------------------cCCCC---HHHHhcCHHHHHHHHHHHHHHHh
Confidence 7664 55665554321000000 00000 000001123333333333 33
Q ss_pred hcCCce-eeeeEEEcCCCCC------CCCchhhHHHHHHHHcC
Q psy8076 688 AIGPIA-AFKLSTSVTGLPR------TRSGKTARKSIVDMARN 723 (737)
Q Consensus 688 ~l~~~~-~p~~~~~v~~lP~------t~sGKi~R~~l~~~~~~ 723 (737)
.++.+. .|+++++++++|+ |++||+.|+++.+.|.+
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~ 607 (624)
T PRK12582 565 EAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAA 607 (624)
T ss_pred hcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHH
Confidence 466666 9999999998875 67788889998887754
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-61 Score=592.16 Aligned_cols=499 Identities=21% Similarity=0.248 Sum_probs=394.0
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcC
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 158 (737)
+.+.++++++++.|+++|+.+.+ .+++||+||+++++++|+.|++ |+++||+|+++++|+++++++++||+++|
T Consensus 633 ~~~~l~~~~~~~~~~~~ai~~~~-----~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G 706 (1140)
T PRK06814 633 LFEALIEAAKIHGFKKLAVEDPV-----NGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAG 706 (1140)
T ss_pred HHHHHHHHHHHcCCCCeEeECCC-----CCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCC
Confidence 45667777777635678876532 3789999999999999999975 99999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCccc
Q psy8076 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL 238 (737)
Q Consensus 159 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~ 238 (737)
++++|+++.++.+++.+++++++++++++++......+ ........+ ....++.++.. ... . .....
T Consensus 707 ~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~-------~~~~~~~~~-~~~~~i~~~~~-~~~---~-~~~~~ 773 (1140)
T PRK06814 707 RVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKAR-------LGPLIEALE-FGIRIIYLEDV-RAQ---I-GLADK 773 (1140)
T ss_pred CEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhc-------chhHHHHhc-cCceEEEehHh-hcc---C-ChHHH
Confidence 99999999999999999999999999999865322111 111112222 22334433321 000 0 00000
Q ss_pred HHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEe
Q psy8076 239 WDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317 (737)
Q Consensus 239 ~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~ 317 (737)
+.+......+ .......++|+++++||||||| .||||+++|++++.+... ....++++++|++++.
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgv~~sh~~~~~~~~~-~~~~~~~~~~d~~l~~ 840 (1140)
T PRK06814 774 IKGLLAGRFPLVYFCNRDPDDPAVILFTSGSEG------------TPKGVVLSHRNLLANRAQ-VAARIDFSPEDKVFNA 840 (1140)
T ss_pred HHHHhhccCCccccCCCCCCCcEEEEECCCccC------------CCcEEEecHHHHHHHHHH-HHHhhCCCCcCEEEEe
Confidence 1111111111 1111357899999999999999 999999999886655544 5566889999999999
Q ss_pred cccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCcc
Q psy8076 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLR 397 (737)
Q Consensus 318 ~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr 397 (737)
+|++|..++...++.++..|+++++.+. ..++..+.+.++++++|++..+|++++.+.+.. ...+++++|
T Consensus 841 ~pl~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~------~~~~~~~lr 910 (1140)
T PRK06814 841 LPVFHSFGLTGGLVLPLLSGVKVFLYPS----PLHYRIIPELIYDTNATILFGTDTFLNGYARYA------HPYDFRSLR 910 (1140)
T ss_pred cchHHHHHHHHHHHHHHHcCCEEEEecC----cccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc------cccccccee
Confidence 9999999987778899999999999864 245677899999999999999999999987653 234678999
Q ss_pred EEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcc
Q psy8076 398 YLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRA 477 (737)
Q Consensus 398 ~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~ 477 (737)
.+++|||++++++.+++.+.++.+++|.||+||++..++... ....++ +++|+|++|++ ++
T Consensus 911 ~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~----~~~~~~-~~vG~p~~g~~-----~~--------- 971 (1140)
T PRK06814 911 YVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNT----PMHNKA-GTVGRLLPGIE-----YR--------- 971 (1140)
T ss_pred EEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecC----CCCCCC-CcCCccCCCCe-----EE---------
Confidence 999999999999999999999999999999999987655432 122334 78999999888 76
Q ss_pred ccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeee
Q psy8076 478 HCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYD 557 (737)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~ 557 (737)
+.+.++ .|+.|||+++|+ +++.||+++++..... ...+|||+
T Consensus 972 -----------------------------~~~~~~----~~~~Gel~v~g~---~~~~gY~~~~~~~~~~--~~~~g~~~ 1013 (1140)
T PRK06814 972 -----------------------------LEPVPG----IDEGGRLFVRGP---NVMLGYLRAENPGVLE--PPADGWYD 1013 (1140)
T ss_pred -----------------------------EeecCC----CCCceEEEEeCC---CcchhhcCCCCCCccc--cCCCCeEe
Confidence 766543 367899999999 9999999976433211 12478999
Q ss_pred cCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccc
Q psy8076 558 TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSG 637 (737)
Q Consensus 558 TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~ 637 (737)
|||+|++|+||++++.||.||+||++|++|+|.|||++|.+|+.|.+++|++++++..++.+++++...+.
T Consensus 1014 TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~~~~--------- 1084 (1140)
T PRK06814 1014 TGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTASDA--------- 1084 (1140)
T ss_pred cCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcCCCc---------
Confidence 99999999999999999999999999999999999999999999999999999998888887776542111
Q ss_pred cccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHH-hcCCceeeeeEEEcCCCCCCCCchhhHHH
Q psy8076 638 LIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVRE-AIGPIAAFKLSTSVTGLPRTRSGKTARKS 716 (737)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~lP~t~sGKi~R~~ 716 (737)
..+++++++++ .++.+++|..++++++||+|++||+||++
T Consensus 1085 ---------------------------------------~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~ 1125 (1140)
T PRK06814 1085 ---------------------------------------TRAAFLAHAKAAGASELMVPAEIITIDEIPLLGTGKIDYVA 1125 (1140)
T ss_pred ---------------------------------------CHHHHHHHHHHcCCCcccCCcEEEEecCcCCCCCCCCcHHH
Confidence 24567888886 49999999999999999999999999999
Q ss_pred HHHHHcCC
Q psy8076 717 IVDMARNK 724 (737)
Q Consensus 717 l~~~~~~~ 724 (737)
|++++.+.
T Consensus 1126 L~~~~~~~ 1133 (1140)
T PRK06814 1126 VTKLAEEA 1133 (1140)
T ss_pred HHHHHHHh
Confidence 99987664
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-61 Score=530.04 Aligned_cols=530 Identities=22% Similarity=0.306 Sum_probs=392.7
Q ss_pred CCCCCchhHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHH
Q psy8076 70 WFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIV 149 (737)
Q Consensus 70 ~~~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vv 149 (737)
|..-...+.+..++.+++... |+.+|+.... .+.+..+||+|+++++.++|++|++.|+.+||+|+|++.|+++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~--~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i 85 (613)
T COG1022 9 WEDVAEIHTLPKRLAERVKDR-PDGVALMYKE--LGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAI 85 (613)
T ss_pred chhhhhcccHHHHHHHHhhcC-CcceeEeeec--CCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHH
Confidence 333344456777888888888 9988988775 6778999999999999999999999999779999999999999999
Q ss_pred HHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEe----ccc
Q psy8076 150 SMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQ----RRC 225 (737)
Q Consensus 150 a~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~----~~~ 225 (737)
+.+||+.+|++.||++++.+++++.++|+++++++++++... ....+......++. +...++.. ...
T Consensus 86 ~d~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~--------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 156 (613)
T COG1022 86 ADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQE--------LLDLVLPVLEDCPK-VVDLIVIIDLVREAV 156 (613)
T ss_pred HHHHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchH--------HHHHHHhhhccccc-hhhhhhhhhhhhhcc
Confidence 999999999999999999999999999999999999998753 22333333332221 11111000 000
Q ss_pred ccc-cccCC---CCcccHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHH
Q psy8076 226 VEE-AELTP---GYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWT 301 (737)
Q Consensus 226 ~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~ 301 (737)
... ..+.. .....+ ............+..+||+|.|+||||||| .||||+++|+|+++++..
T Consensus 157 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~dDlatiiYTSGTTG------------~PKGVmLth~N~~~~v~~- 222 (613)
T COG1022 157 EAKALVLEVFPDEGISLF-LIDSAGLEGRIAPPKPDDLATIIYTSGTTG------------TPKGVMLTHRNLLAQVAG- 222 (613)
T ss_pred chhhccccccccccchhh-hhcccccccccCCCCccceEEEEEcCCCCC------------CCceEEEehHHHHHHHHH-
Confidence 000 00000 011111 111111122335678999999999999999 999999999998877776
Q ss_pred Hhhhhc-CCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHH
Q psy8076 302 MSVIYN-MGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRR 380 (737)
Q Consensus 302 ~~~~~~-~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~ 380 (737)
+...+. ++++|++++++|+.|++...+.....+..|++++.. .++..++..+.++++|++.++|.+|+.+.+
T Consensus 223 ~~~~~~~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~-------~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~ 295 (613)
T COG1022 223 IDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFK-------EDPRTLLEDLKEVRPTVMIGVPRVWEKVYK 295 (613)
T ss_pred HHhhCCCCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEec-------CCHHHHHHHHHHhCCeEEeechHHHHHHHH
Confidence 455565 889999999999999999876555555555555543 589999999999999999999999987754
Q ss_pred cCCCC----c-----------------------------------------cccCCCCCCccEEEeecCCCCHHHHHHHH
Q psy8076 381 EDKDS----T-----------------------------------------LGAQYSTDSLRYLFVAGEHCDHETKNWAE 415 (737)
Q Consensus 381 ~~~~~----~-----------------------------------------~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~ 415 (737)
...+. . ...... .++|++++||+++++++..+++
T Consensus 296 ~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lG-gri~~~~sGGa~l~~~~~~f~~ 374 (613)
T COG1022 296 GIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALG-GRIRYALSGGAPLSPELLHFFR 374 (613)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhC-CcEEEEEecCCcCCHHHHHHHH
Confidence 31100 0 011122 5899999999999999999999
Q ss_pred HhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCC
Q psy8076 416 KSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQ 495 (737)
Q Consensus 416 ~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (737)
. +|++++++||+|||+...+.+. ...... +++|+|+|+++ ++
T Consensus 375 ~-lGi~i~eGYGlTEts~~~~v~~----~~~~~~-gtvG~p~p~~e-----vK--------------------------- 416 (613)
T COG1022 375 S-LGIPILEGYGLTETSAVVSVNP----PDRFVL-GTVGKPLPGIE-----VK--------------------------- 416 (613)
T ss_pred H-cCCCeEEEecccccccceEEcc----ccCccc-CCcCCcCCCce-----EE---------------------------
Confidence 5 5899999999999998888763 444555 88999999988 77
Q ss_pred CCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEee
Q psy8076 496 NATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTAR 575 (737)
Q Consensus 496 ~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR 575 (737)
|+|+ |||+|+|| ++|.|||++|+.|.+.|.. +|||+|||+|.+|++|+|+|+||
T Consensus 417 -----------I~d~----------GEilVRG~---~Vm~GYyk~pe~Taeaf~~--DGWf~TGDlg~~d~~g~L~i~gR 470 (613)
T COG1022 417 -----------IADD----------GEILVRGP---NVMKGYYKNPEATAEAFTE--DGWFRTGDLGELDEDGYLVITGR 470 (613)
T ss_pred -----------EccC----------ceEEEecc---hhcchhcCChHHHhhhccc--cCCcccCceeEEcCCCcEEEeec
Confidence 8883 99999999 9999999999999999855 99999999999999999999999
Q ss_pred cCCeEeeC-cEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCc
Q psy8076 576 DDDVINVA-GHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNP 654 (737)
Q Consensus 576 ~dd~Ik~~-G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (737)
++|+||.. |++|.|+.||+.+.++|.|.+++|++.... .++|.|++..+.+.+|.......
T Consensus 471 kK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg~~k~----~~~AlIvp~~~~l~~~a~~~~~~-------------- 532 (613)
T COG1022 471 KKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKK----FLVALIVPDFDALEKWAESLNKV-------------- 532 (613)
T ss_pred ccceEECCCCcccChHHHHHHHhcCCCeeEEEEEecCCc----ceEEEEeCCHHHHHHHHHhcccc--------------
Confidence 99999988 999999999999999999999999993222 69999999887444321111000
Q ss_pred cccccCCCCCCcccccCCChHHHHHHHHHHHHH---hcCCceeeeeEEEc-CCCC-----CCCCchhhHHHHHHHHcCC
Q psy8076 655 IRVLIKPYGPISSIYCTRSDEEIGKELKELVRE---AIGPIAAFKLSTSV-TGLP-----RTRSGKTARKSIVDMARNK 724 (737)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~l~~~~~p~~~~~v-~~lP-----~t~sGKi~R~~l~~~~~~~ 724 (737)
.. .+.........+.+.+...+.+ .+..+..+..+... .++. .|++-|+.|..+.+.+.+.
T Consensus 533 -------~~--~~~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~ 602 (613)
T COG1022 533 -------IS--ASREELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDE 602 (613)
T ss_pred -------cc--CCHHHHhhCHHHHHHHHHHHHHHhhcccchhhhheeeecccccccccCccccchhhhHHHHHHhhhhH
Confidence 00 0000001122233333333332 22444555555554 3343 6899999999999888763
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-60 Score=545.72 Aligned_cols=534 Identities=18% Similarity=0.179 Sum_probs=380.6
Q ss_pred HHHHHhhhhhccCCCceEEEEeCC---CCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHH
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSP---VTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATV 155 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~---~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~ 155 (737)
+.++|++++..+ |+++|+++.+. ..+..+.+||+||+++++++|++|.++| ++||+|+++++|++++++++|||+
T Consensus 3 ~~~~l~~~a~~~-p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~ 80 (578)
T PRK05850 3 VPSLLRERASLQ-PDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGAL 80 (578)
T ss_pred HHHHHHHHHhcC-CCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHH
Confidence 567888999888 99999997541 1223479999999999999999999999 689999999999999999999999
Q ss_pred HcCCEEEecCC---CCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCC-CCCeEEEEeccccccccc
Q psy8076 156 RLGAIHSVVFG---GFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSC-KPDYCIIFQRRCVEEAEL 231 (737)
Q Consensus 156 ~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~viv~~~~~~~~~~~ 231 (737)
++|++++|+++ ..+.+++.+++++++++++++++... ..+.+....... ....++.++..
T Consensus 81 ~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~------- 144 (578)
T PRK05850 81 QAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVV---------DDVTEYVAPQPGQSAPPVIEVDLL------- 144 (578)
T ss_pred HcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHH---------HHHHHHHhhcccccccceEeeccc-------
Confidence 99999999997 55789999999999999999986532 222222111110 11112221110
Q ss_pred CCCCcccHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhc----
Q psy8076 232 TPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYN---- 307 (737)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~---- 307 (737)
.+ .. ..........++++++++||||||| .||||+++|++++.+........+.
T Consensus 145 ------~~---~~-~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~sh~~l~~~~~~~~~~~~~~~~~ 202 (578)
T PRK05850 145 ------DL---DS-PRGSDARPRDLPSTAYLQYTSGSTR------------TPAGVMVSHRNVIANFEQLMSDYFGDTGG 202 (578)
T ss_pred ------cc---cc-CCccccCCCCCCCeEEEEeCCCCCC------------CCceEEEeHHHHHHHHHHHHHhhcccccc
Confidence 00 00 0000112346789999999999999 9999999999877665543333333
Q ss_pred -CCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCc
Q psy8076 308 -MGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDST 386 (737)
Q Consensus 308 -~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~ 386 (737)
...++++++..|++|..|+...++.+++.|+++++.+.... ..++..|++.+++++++++..++.++..+.......
T Consensus 203 ~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~-~~~p~~~~~~i~~~~~~~~~~p~~~~~~~~~~~~~~- 280 (578)
T PRK05850 203 VPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAF-LQRPARWMQLLASNPHAFSAAPNFAFELAVRKTSDD- 280 (578)
T ss_pred CCCCcceEEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHH-HHCHHHHHHHHHHcCCeEEeCCcHHHHHHHHhcchh-
Confidence 35688999999999999988888999999999999864211 237899999999999986654444444443322110
Q ss_pred cccCCCCCCccEEEeecCCCCHHHHHHHHHhcC------CcccccccccccccccccccccCCCCC---CCCCCccCCCc
Q psy8076 387 LGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFN------VTMLNHWWQTETGHSITAHCLGYQHDT---VPPKYSTGLPF 457 (737)
Q Consensus 387 ~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~------~~i~~~YG~TE~~~~~~~~~~~~~~~~---~~~~~~~G~p~ 457 (737)
.....+++++|.+++||+++++++.++|.+.++ ..+++.||+||++..+........... .....+.|.+.
T Consensus 281 ~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 360 (578)
T PRK05850 281 DMAGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAK 360 (578)
T ss_pred hhcCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceE
Confidence 012346789999999999999999999988763 368999999998754443211000000 00001122211
Q ss_pred CCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcC-CCCccCCCcceEEEEecCCCCCcccc
Q psy8076 458 PGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRN-DGSECEPHELGRIVVKLPLPPGTMST 536 (737)
Q Consensus 458 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~-~g~~~~~g~~GEL~i~g~~~~~~~~g 536 (737)
+... ....+....|.+. +.+++|+|+ ++.+|+.|+.|||+|+|| +++.|
T Consensus 361 ~~~~--------------------------~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~~Gel~v~g~---~~~~g 410 (578)
T PRK05850 361 RCET--------------------------GGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGTVGEIWVHGD---NVAAG 410 (578)
T ss_pred ecCC--------------------------CCCceEEeccCCC-CCEEEEEcCCCCcCCCCCCEEEEEEecC---ccccc
Confidence 1110 0011112234443 567889995 578999999999999999 99999
Q ss_pred cccChhhhHHhhcc---------CCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEE
Q psy8076 537 LYKAPQRFMKIYFT---------KFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAV 607 (737)
Q Consensus 537 y~~~~~~~~~~~~~---------~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~v 607 (737)
|+++++.+.+.|.. ..+|||+|||+|+++ ||+++|+||.||+||++|++|+|.|||++|.+||.+ +++|
T Consensus 411 Y~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~~-~~~v 488 (578)
T PRK05850 411 YWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGG-RVAA 488 (578)
T ss_pred ccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEECCeecCHHHHHHHHHHhcCC-cEEE
Confidence 99999999887742 125799999999997 999999999999999999999999999999999985 5888
Q ss_pred ecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHH
Q psy8076 608 IGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVRE 687 (737)
Q Consensus 608 v~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 687 (737)
++++++ .++.++++|+++.... .. .........+++.+..
T Consensus 489 ~~v~~~-~~~~~~a~v~~~~~~~----------~~-----------------------------~~~~~~~~~l~~~v~~ 528 (578)
T PRK05850 489 ISVPDD-GTEKLVAIIELKKRGD----------SD-----------------------------EEAMDRLRTVKREVTS 528 (578)
T ss_pred EEecCC-CceEEEEEEEeccccC----------cc-----------------------------hhhhhhHHHHHHHHHH
Confidence 888876 6788999999876510 00 0000122344444444
Q ss_pred hcCC--ceeeeeEEEc--CCCCCCCCchhhHHHHHHHHcCCCC
Q psy8076 688 AIGP--IAAFKLSTSV--TGLPRTRSGKTARKSIVDMARNKPL 726 (737)
Q Consensus 688 ~l~~--~~~p~~~~~v--~~lP~t~sGKi~R~~l~~~~~~~~~ 726 (737)
.+.. ...|..++++ ++||+|++||++|++|++.+.+..+
T Consensus 529 ~l~~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~~~~~ 571 (578)
T PRK05850 529 AISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQYRQDEF 571 (578)
T ss_pred HHHHHhCCCceEEEEeCCCCcCCCCCchHHHHHHHHHHHcCCc
Confidence 3332 2345555565 4899999999999999999987654
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-59 Score=535.73 Aligned_cols=510 Identities=22% Similarity=0.275 Sum_probs=392.0
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcC
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 158 (737)
..+.|++.++.+ |+++|+.+.+ ..+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|
T Consensus 20 ~~~~~~~~~~~~-~~~~a~~~~~------~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G 92 (545)
T PRK08162 20 PLSFLERAAEVY-PDRPAVIHGD------RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAG 92 (545)
T ss_pred HHHHHHHHHHHC-CCCeEEEECC------eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhC
Confidence 557888888887 9999999875 789999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCccc
Q psy8076 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL 238 (737)
Q Consensus 159 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~ 238 (737)
++++|+++.++.+++..++++++++.++++... ...+.++....+ . .+.+++.................
T Consensus 93 ~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~---------~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~ 161 (545)
T PRK08162 93 AVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEF---------AEVAREALALLP-G-PKPLVIDVDDPEYPGGRFIGALD 161 (545)
T ss_pred cEEeccccccChHHHHHHHHhCCCeEEEEccch---------hhHHHHHHhhCC-C-CceEEEecCccccccCCCccccc
Confidence 999999999999999999999999999998752 233444333333 1 12333322111000000112234
Q ss_pred HHHHHhhcCCC-C-CccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEE
Q psy8076 239 WDDALAQRLSH-R-CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWT 316 (737)
Q Consensus 239 ~~~~~~~~~~~-~-~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~ 316 (737)
+.++....... . ..+...+++++++||||||| .||||+++|+++....... ...+++..++++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG------------~PKgv~~t~~~~~~~~~~~-~~~~~~~~~~~~l~ 228 (545)
T PRK08162 162 YEAFLASGDPDFAWTLPADEWDAIALNYTSGTTG------------NPKGVVYHHRGAYLNALSN-ILAWGMPKHPVYLW 228 (545)
T ss_pred HHHHhccCCccccccCCCCCCCeEEEEeCCCCCC------------CCcEEEEecHHHHHHHHHH-HHhcCCCCCCeeEe
Confidence 55554332221 1 11234457899999999999 9999999998766554433 33467888999999
Q ss_pred ecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCc
Q psy8076 317 ASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSL 396 (737)
Q Consensus 317 ~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~L 396 (737)
.+|++|..++...++..+ .|++.++.. ..++..+++.++++++|++.++|++++.|.+.... ....+.++
T Consensus 229 ~~pl~h~~~~~~~~~~~~-~~g~~~~~~-----~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~----~~~~~~~~ 298 (545)
T PRK08162 229 TLPMFHCNGWCFPWTVAA-RAGTNVCLR-----KVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAE----WRAGIDHP 298 (545)
T ss_pred ccCcHhhhhHHHHHHHHH-HccEEEEeC-----CCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccc----cccCCccc
Confidence 999999988765444445 455554443 36899999999999999999999999999876432 22234566
Q ss_pred cEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCC-------CCCCCCccCCCcCCCCCCcceeee
Q psy8076 397 RYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHD-------TVPPKYSTGLPFPGYDGKYVNIVM 469 (737)
Q Consensus 397 r~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~-------~~~~~~~~G~p~~g~~~~~~~~~~ 469 (737)
+.++++|+++++++.+++.+ ++.++++.||+||+++.++......... ...+ .+.|.+.+.
T Consensus 299 ~~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~---------- 366 (545)
T PRK08162 299 VHAMVAGAAPPAAVIAKMEE-IGFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLK-ARQGVRYPL---------- 366 (545)
T ss_pred eEEEECCCCCCHHHHHHHHH-hCCceeecccccccCcceeecccccccccCCccchhhcc-CCCCcccCC----------
Confidence 77889999999999998876 5899999999999975544321100000 0001 122333221
Q ss_pred eccccCccccccccccccccCCCCCCCCcccccceEEEEcC-CCCccCC-C-cceEEEEecCCCCCcccccccChhhhHH
Q psy8076 470 LNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRN-DGSECEP-H-ELGRIVVKLPLPPGTMSTLYKAPQRFMK 546 (737)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~-~g~~~~~-g-~~GEL~i~g~~~~~~~~gy~~~~~~~~~ 546 (737)
+..++|+|+ ++.+++. | +.|||+|+|+ .++.||+++++.+.+
T Consensus 367 --------------------------------~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~---~~~~gY~~~~~~~~~ 411 (545)
T PRK08162 367 --------------------------------QEGVTVLDPDTMQPVPADGETIGEIMFRGN---IVMKGYLKNPKATEE 411 (545)
T ss_pred --------------------------------cceEEEEcCCCCcccCCCCCceeEEEEecC---cchhhhcCChhhhHH
Confidence 123448884 6888876 3 4799999999 899999999998887
Q ss_pred hhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEee
Q psy8076 547 IYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKK 626 (737)
Q Consensus 547 ~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~ 626 (737)
.|. +|||+|||+|++|+||+++|+||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++++++++
T Consensus 412 ~~~---~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~ 488 (545)
T PRK08162 412 AFA---GGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELK 488 (545)
T ss_pred Hhh---CCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeC
Confidence 762 68999999999999999999999999999999999999999999999999999999999887788899999887
Q ss_pred cCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCC
Q psy8076 627 RIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPR 706 (737)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~ 706 (737)
++ . ....+++++++++.|+.|++|..+++ .+||+
T Consensus 489 ~~------------~---------------------------------~~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~ 522 (545)
T PRK08162 489 DG------------A---------------------------------SATEEEIIAHCREHLAGFKVPKAVVF-GELPK 522 (545)
T ss_pred CC------------C---------------------------------CCCHHHHHHHHHHhcccccCCcEEEe-cccCC
Confidence 65 1 01246899999999999999999875 68999
Q ss_pred CCCchhhHHHHHHHHcCCC
Q psy8076 707 TRSGKTARKSIVDMARNKP 725 (737)
Q Consensus 707 t~sGKi~R~~l~~~~~~~~ 725 (737)
|++||++|+.|++++...+
T Consensus 523 t~~gK~~r~~l~~~~~~l~ 541 (545)
T PRK08162 523 TSTGKIQKFVLREQAKSLK 541 (545)
T ss_pred CCCcCCcHHHHHHHHhhhh
Confidence 9999999999999876543
|
|
| >KOG1256|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-59 Score=509.67 Aligned_cols=545 Identities=18% Similarity=0.193 Sum_probs=420.8
Q ss_pred CCCCCCCchhHHHHHHhhhhhccCCCceEEEEeCC--CCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCH
Q psy8076 68 TKWFVGGEINACYNAIDRHVERGMAKKVALIHDSP--VTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIP 145 (737)
Q Consensus 68 ~~~~~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~ 145 (737)
..|+.+.. ++++.|.+.+..+ |+.+++-+... ..+++..+||+|..+++..+|..|+++|+++++.|+|+.-|++
T Consensus 68 ~~~~~~~~--T~~~~f~~~~~~~-~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~p 144 (691)
T KOG1256|consen 68 SCPFDGPL--TLYEGFRRSVEKS-GNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRP 144 (691)
T ss_pred CCCCCCcc--cHHHHhhcchhcc-CCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCCh
Confidence 34554444 8999999999999 99999987753 4577899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHh-----cCCCCCeEEE
Q psy8076 146 EAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEI-----SSCKPDYCII 220 (737)
Q Consensus 146 e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~viv 220 (737)
||+++.+||...|++.|||..+++++++.++++++.+++++++++ ..+...++. ++ .++.+++
T Consensus 145 EWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~-----------~k~~~ll~~~~~~~~~-~LK~iI~ 212 (691)
T KOG1256|consen 145 EWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNA-----------KKAEKLLEIKENDSLP-SLKAIIQ 212 (691)
T ss_pred hhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCH-----------HHHHHHHhhcccccCc-cceeEEE
Confidence 999999999999999999999999999999999999999999964 222222221 33 6788888
Q ss_pred EecccccccccC---CCCcccHHHHHhhcCC--CCC-ccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchh
Q psy8076 221 FQRRCVEEAELT---PGYDILWDDALAQRLS--HRC-VPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGH 294 (737)
Q Consensus 221 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~-~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~ 294 (737)
++....+..... .-...+|+++.+-+.. ... .+..|+|.|.|+||||||| .||||++||+|+
T Consensus 213 ~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG------------~PKGVMLTH~Ni 280 (691)
T KOG1256|consen 213 LDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTG------------NPKGVMLTHRNI 280 (691)
T ss_pred ecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCC------------CCceEEEeccce
Confidence 877533222211 1236789998877643 333 4789999999999999999 999999999998
Q ss_pred HHHHHH---HHhhh--hcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEe
Q psy8076 295 IATLAW---TMSVI--YNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLF 369 (737)
Q Consensus 295 ~~~~~~---~~~~~--~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~ 369 (737)
+..... ..... .....+|++++++|+.|++..+.+. ..+..|+++.++.+ |+..+.+.|++.++|++.
T Consensus 281 v~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~-~~~~~G~~IgF~~g------D~~~l~~dlk~lkPT~f~ 353 (691)
T KOG1256|consen 281 VSDVAGIFFLSAAENAKATVGDDVYLSYLPLAHIFERVVEL-YTFYIGAKIGFARG------DILKLTDDLKELKPTVFP 353 (691)
T ss_pred eehhhhhhhhhhcccccccccCceEEEeCcHHHHHHHHHHH-hHhhcccEEEEecC------ChHHHHHHHHHhCCcEEe
Confidence 775432 11111 1223469999999999999987754 45589999999975 777888999999999999
Q ss_pred ecHHHHHHHHHcCCCCc------------------c-----ccC----CCC--------------CCccEEEeecCCCCH
Q psy8076 370 TAPTALRVIRREDKDST------------------L-----GAQ----YST--------------DSLRYLFVAGEHCDH 408 (737)
Q Consensus 370 ~~P~~~~~l~~~~~~~~------------------~-----~~~----~~l--------------~~Lr~i~~gGe~l~~ 408 (737)
++|.+++.+........ . ... ..+ .++|.+++|++|+++
T Consensus 354 ~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ 433 (691)
T KOG1256|consen 354 GVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSP 433 (691)
T ss_pred ccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCH
Confidence 99999977654311100 0 000 000 689999999999999
Q ss_pred HHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccc
Q psy8076 409 ETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLR 488 (737)
Q Consensus 409 ~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (737)
++..+++..+|+.++++||+|||++.++.... ..... +++|.|+|+++ ++
T Consensus 434 ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~~----~d~~l-gsvG~p~p~~~-----vK-------------------- 483 (691)
T KOG1256|consen 434 EVLTFFRAALGCRVLEGYGLTETSAGTTLTLP----GDNVL-GSVGPPVPGNE-----VK-------------------- 483 (691)
T ss_pred HHHHHHHHhcCceeeecccccccCCceEeccC----CCCCC-CCcCCcccCce-----EE--------------------
Confidence 99999999999999999999999966555432 12234 89999999999 88
Q ss_pred cCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecC
Q psy8076 489 KNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDEN 567 (737)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~d 567 (737)
++| ++-..-+.|..|||||+|+ +++.|||++|++|.+.+- .+||++|||+|+|+++
T Consensus 484 ------------------L~dvpe~ny~a~~~~GEIcirG~---~Vf~GYyK~p~~T~e~id--eDGWLhTGDiG~~~p~ 540 (691)
T KOG1256|consen 484 ------------------LVDVPEMNYDADGSKGEICVRGP---NVFMGYYKDPEKTAEAID--EDGWLHTGDIGEWDPN 540 (691)
T ss_pred ------------------EechHHhCcCcCCCcceEEEecc---hhceeccCChHHHhhhhc--cccccccccceeECCC
Confidence 877 4555555566899999999 999999999999999873 4999999999999999
Q ss_pred ceEEEEeecCCeEeeC-cEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCC
Q psy8076 568 GYIYVTARDDDVINVA-GHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLER 646 (737)
Q Consensus 568 G~l~i~GR~dd~Ik~~-G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 646 (737)
|.|.|.||++++||+. |+.|.|..||++..+.+.|.+.+|.+.... ..++|+|+++.+....+........
T Consensus 541 G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~---~~LvaiVvpd~e~~~~~a~~~~~~~----- 612 (691)
T KOG1256|consen 541 GTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLR---SFLVAIVVPDPEVLKSWAAKDGVKG----- 612 (691)
T ss_pred ccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcch---hcEEEEEecChhhchhhHHHccCch-----
Confidence 9999999999999999 999999999999999999999999987543 3799999998875544332110000
Q ss_pred CCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHH-HhcCCceeeeeEEEc------CCCCCCCCchhhHHHHHH
Q psy8076 647 PTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVR-EAIGPIAAFKLSTSV------TGLPRTRSGKTARKSIVD 719 (737)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~l~~~~~p~~~~~v------~~lP~t~sGKi~R~~l~~ 719 (737)
. -...+......+....++.+.-+ +.+..+.....+.+. +.=-+||+-|+.|..|.+
T Consensus 613 -------~---------~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~ 676 (691)
T KOG1256|consen 613 -------T---------FEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLK 676 (691)
T ss_pred -------h---------HHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHH
Confidence 0 00011111122334445555444 356666666666663 334569999999999999
Q ss_pred HHcC
Q psy8076 720 MARN 723 (737)
Q Consensus 720 ~~~~ 723 (737)
.|.+
T Consensus 677 ~yk~ 680 (691)
T KOG1256|consen 677 YYKK 680 (691)
T ss_pred HHHH
Confidence 8875
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-59 Score=523.30 Aligned_cols=445 Identities=18% Similarity=0.216 Sum_probs=371.6
Q ss_pred hhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEe
Q psy8076 84 DRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSV 163 (737)
Q Consensus 84 ~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vp 163 (737)
..+++++ |+++|+++.+ +.+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++|
T Consensus 10 ~~~a~~~-~~~~a~~~~~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~ 82 (458)
T PRK09029 10 RHWAQVR-PQAIALRLND------EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLP 82 (458)
T ss_pred HHHHHhC-CCceeeecCC------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEee
Confidence 4556666 9999999765 88999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHHH
Q psy8076 164 VFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDAL 243 (737)
Q Consensus 164 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~ 243 (737)
+++..+.+++..++++++++++++++.... +. .+... ...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------~~--------~~~~~-------------------~~~--- 122 (458)
T PRK09029 83 LNPQLPQPLLEELLPSLTLDFALVLEGENT----------FS--------ALTSL-------------------HLQ--- 122 (458)
T ss_pred cCCCCCHHHHHHHHHhcCCCEEEEcCcccc----------hh--------hcccc-------------------ccc---
Confidence 999999999999999999999999765211 00 00000 000
Q ss_pred hhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccc
Q psy8076 244 AQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWV 323 (737)
Q Consensus 244 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 323 (737)
...........++++++++||||||| .||||+++|++++..... ....+++..+|+++...|++|.
T Consensus 123 -~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PKgv~~s~~~~~~~~~~-~~~~~~~~~~~~~l~~~p~~h~ 188 (458)
T PRK09029 123 -LVEGAHAVAWQPQRLATMTLTSGSTG------------LPKAAVHTAQAHLASAEG-VLSLMPFTAQDSWLLSLPLFHV 188 (458)
T ss_pred -cccccCcccCCCCCeEEEEECCCCCC------------CCCEEEEeHHHHHHHHHH-HhhcCCCCccceEEEecCcHhh
Confidence 00001122356789999999999999 999999999987766554 4456788999999999999999
Q ss_pred cchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeec
Q psy8076 324 VGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAG 403 (737)
Q Consensus 324 ~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gG 403 (737)
+++. .++.+|..|+++++.+. ..+++.+ +++|.+..+|+++..+...... ..+||.+++||
T Consensus 189 ~g~~-~~~~~l~~G~~v~~~~~--------~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~--------~~~l~~i~~gG 249 (458)
T PRK09029 189 SGQG-IVWRWLYAGATLVVRDK--------QPLEQAL--AGCTHASLVPTQLWRLLDNRSE--------PLSLKAVLLGG 249 (458)
T ss_pred hhhH-HHHHHHhCCceEEeCCh--------HHHHHHH--hhceeeecChHHHHHHHhcccc--------CCcceEEEECC
Confidence 9965 36778999999998652 4567777 4899999999999988765332 34799999999
Q ss_pred CCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcccccccc
Q psy8076 404 EHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRIL 483 (737)
Q Consensus 404 e~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~ 483 (737)
+++++.+.+++.+ ++.++++.||+||++...+.... ... .++|+|++++. ++
T Consensus 250 ~~~~~~~~~~~~~-~g~~~~~~YG~tE~~~~~~~~~~------~~~-~~~G~~~~~~~-----~~--------------- 301 (458)
T PRK09029 250 AAIPVELTEQAEQ-QGIRCWCGYGLTEMASTVCAKRA------DGL-AGVGSPLPGRE-----VK--------------- 301 (458)
T ss_pred CCCCHHHHHHHHH-cCCcEeccccccccCcceeccCC------CCC-CCCCCCCCCCE-----EE---------------
Confidence 9999999999876 58999999999999865443211 112 46889998887 66
Q ss_pred ccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEE
Q psy8076 484 PESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGY 563 (737)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~ 563 (737)
|+| |||+|+|+ .++.||+++++.+... ..+|||+|||+|+
T Consensus 302 -----------------------i~~-----------gel~v~g~---~~~~gY~~~~~~~~~~---~~~~~~~TGD~~~ 341 (458)
T PRK09029 302 -----------------------LVD-----------GEIWLRGA---SLALGYWRQGQLVPLV---NDEGWFATRDRGE 341 (458)
T ss_pred -----------------------EeC-----------CEEEEecC---ceeeeeecCccccccc---cCCCccCCCCcEE
Confidence 764 89999999 9999999988776432 2478999999999
Q ss_pred EecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccc
Q psy8076 564 YDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGK 643 (737)
Q Consensus 564 ~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~ 643 (737)
+| ||+++|.||.||+||++|++|+|.|||++|.+||.|.+++|++++++..++.++++|+.... .
T Consensus 342 ~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~------------~-- 406 (458)
T PRK09029 342 WQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSE------------A-- 406 (458)
T ss_pred Ee-CCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCcc------------c--
Confidence 99 99999999999999999999999999999999999999999999999888999999986633 1
Q ss_pred cCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHHHcC
Q psy8076 644 LERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARN 723 (737)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~ 723 (737)
..++|+++++++|++|++|..+++++++|+|.+||++|+.|++++.+
T Consensus 407 ---------------------------------~~~~l~~~~~~~l~~~~~P~~~~~~~~~p~t~~gKi~r~~L~~~~~~ 453 (458)
T PRK09029 407 ---------------------------------AVVNLAEWLQDKLARFQQPVAYYLLPPELKNGGIKISRQALKEWVAQ 453 (458)
T ss_pred ---------------------------------CHHHHHHHHHhhchhccCCeEEEEecccccCcCCCcCHHHHHHHHHh
Confidence 25689999999999999999999999999999999999999999875
Q ss_pred C
Q psy8076 724 K 724 (737)
Q Consensus 724 ~ 724 (737)
.
T Consensus 454 ~ 454 (458)
T PRK09029 454 Q 454 (458)
T ss_pred c
Confidence 4
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-58 Score=524.34 Aligned_cols=521 Identities=18% Similarity=0.163 Sum_probs=378.2
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcC
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 158 (737)
+.+.+..++... |+.+++...+ ..+.+||.||+++++++|++|.+.|+++||+|+|+++|+++++++++||+++|
T Consensus 4 ~~~~~~~~~~~~-~~~~~~~~~~----~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g 78 (545)
T PRK07768 4 FTEKMYANARTS-PRGMVTGEPD----APVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRG 78 (545)
T ss_pred HHHHHHHHhhCC-CcceEEecCC----CceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcC
Confidence 566777788777 9999987654 24789999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHH-------HHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEeccccccccc
Q psy8076 159 AIHSVVFGGFAAREL-------CARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAEL 231 (737)
Q Consensus 159 ~~~vpl~~~~~~~~l-------~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~ 231 (737)
++++|+++..+.+++ ..+++.++++.+++++.... .+.. ... ...
T Consensus 79 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~~-~~~---~~~--------------- 130 (545)
T PRK07768 79 ASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLA---------AAPV-LEE---KGI--------------- 130 (545)
T ss_pred ccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhh---------hhhh-hcc---cCC---------------
Confidence 999999998886554 45677789999999764211 1110 000 000
Q ss_pred CCCCcccHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCC
Q psy8076 232 TPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQD 311 (737)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~ 311 (737)
..+.+.++...... ......++++++++||||||| .||||+++|++++..... +...+++..+
T Consensus 131 ---~~~~~~~l~~~~~~-~~~~~~~~~~a~i~~TSGtTG------------~PKgv~~s~~~~~~~~~~-~~~~~~~~~~ 193 (545)
T PRK07768 131 ---RVLTVADLLAADPI-DPVETGEDDLALMQLTSGSTG------------SPKAVQITHGNLYANAEA-MFVAAEFDVE 193 (545)
T ss_pred ---ceeehhhhcccCCC-CcCCCCCCCEEEEEeCCCCCC------------CCceEEEcHHHHHHHHHH-HHHhcCCCCC
Confidence 11223333322111 223456799999999999999 999999999887665443 4555777776
Q ss_pred -cEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccC
Q psy8076 312 -DVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQ 390 (737)
Q Consensus 312 -d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~ 390 (737)
|++++.+|++|..++...++.++..|++++++..... ..++..+++.++++++|++..+|.++..+.+..........
T Consensus 194 ~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 272 (545)
T PRK07768 194 TDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDF-LRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGA 272 (545)
T ss_pred CceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHH-HHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccC
Confidence 8999999999999987767788999999998764221 24788899999999999998888888777654321111124
Q ss_pred CCCCCccEEEeecCCCCHHHHHHHHHh---cCC---cccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCc
Q psy8076 391 YSTDSLRYLFVAGEHCDHETKNWAEKS---FNV---TMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKY 464 (737)
Q Consensus 391 ~~l~~Lr~i~~gGe~l~~~~~~~~~~~---~~~---~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~ 464 (737)
.++++||.++++|+++++++.+++.+. ++. .+++.||+||++..++....+. ...
T Consensus 273 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~---~~~---------------- 333 (545)
T PRK07768 273 FDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGA---GLV---------------- 333 (545)
T ss_pred CCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCC---Ccc----------------
Confidence 578899999999999999999998874 554 4999999999986554322110 000
Q ss_pred ceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhh
Q psy8076 465 VNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRF 544 (737)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~ 544 (737)
+...+|...... .+..+.........+..|.+.++++++|+|++|++++.|+.|||+++|+ .++.||++.+...
T Consensus 334 --~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~ 407 (545)
T PRK07768 334 --VDEVDADLLAAL-RRAVPATKGNTRRLATLGPPLPGLEVRVVDEDGQVLPPRGVGVIELRGE---SVTPGYLTMDGFI 407 (545)
T ss_pred --eeeechhHhhcc-CceeccCCCCcceEEeccCCCCCCEEEEECCCCCCCCCCCEEEEEEccC---cccccccCCCCCc
Confidence 000000000000 0000000011122345666777777779999999999999999999998 8999999865432
Q ss_pred HHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccC--CCCCcceEEE
Q psy8076 545 MKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPE--PTKGEIPFCL 622 (737)
Q Consensus 545 ~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~--~~~~~~~~a~ 622 (737)
..+ ..+|||+|||++++++||+++++||.||+||++|++|++.|||++|.+||+|.+++|+++.. ...++.++++
T Consensus 408 -~~~--~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~ 484 (545)
T PRK07768 408 -PAQ--DADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVA 484 (545)
T ss_pred -ccc--cCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEE
Confidence 222 23689999999999999999999999999999999999999999999999999988877653 3334445555
Q ss_pred EEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCc--eeeeeEEE
Q psy8076 623 YIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPI--AAFKLSTS 700 (737)
Q Consensus 623 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~p~~~~~ 700 (737)
++.... .......++.+.+++.+..+ ..|..+.+
T Consensus 485 v~~~~~--------------------------------------------~~~~~~~~l~~~~~~~l~~~~~~~p~~v~~ 520 (545)
T PRK07768 485 VESNAF--------------------------------------------EDPAEVRRIRHQVAHEVVAEVGVRPRNVVV 520 (545)
T ss_pred EEeccc--------------------------------------------ccHHHHHHHHHHHHHHHHHHhCCCccEEEE
Confidence 544332 01122335555665555433 46777777
Q ss_pred cC--CCCCCCCchhhHHHHHHHHc
Q psy8076 701 VT--GLPRTRSGKTARKSIVDMAR 722 (737)
Q Consensus 701 v~--~lP~t~sGKi~R~~l~~~~~ 722 (737)
++ .||+|++||++|+.|++++.
T Consensus 521 v~~~~lP~t~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 521 LGPGSIPKTPSGKLRRANAAELVT 544 (545)
T ss_pred eCCCcCCCCCchhHHHHHHHHhcC
Confidence 75 89999999999999999875
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-57 Score=501.48 Aligned_cols=407 Identities=21% Similarity=0.228 Sum_probs=348.6
Q ss_pred EEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHH
Q psy8076 97 LIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCAR 176 (737)
Q Consensus 97 l~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~ 176 (737)
+++.+ +.+||+||.++++++|+.|. .|+++|++|+++++|++++++++||++++|++++|+++..+.+++..+
T Consensus 2 ~~~~~------~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~ 74 (414)
T PRK08308 2 LIVND------EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRM 74 (414)
T ss_pred eEecC------ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHH
Confidence 55665 89999999999999999985 689999999999999999999999999999999999999999999999
Q ss_pred HhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHHHhhcCCCCCccccC
Q psy8076 177 LEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEA 256 (737)
Q Consensus 177 l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (737)
+++++++++++++.... . . ......+
T Consensus 75 ~~~~~~~~~i~~~~~~~---------------------~------~---------------------------~~~~~~~ 100 (414)
T PRK08308 75 AKRAGCHGLLYGESDFT---------------------K------L---------------------------EAVNYLA 100 (414)
T ss_pred HHhCCCCEEEecCcccc---------------------c------c---------------------------cCCCCCC
Confidence 99999999998752100 0 0 0012356
Q ss_pred CCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccccchhhhhhhcccc
Q psy8076 257 NDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAA 336 (737)
Q Consensus 257 ~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~ 336 (737)
+++++++||||||| .||||+++|+++..+... +...+++..+|+++..+|++|.+|+...++.+|..
T Consensus 101 ~~~~~i~~TSGtTG------------~PKgv~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~ 167 (414)
T PRK08308 101 EEPSLLQYSSGTTG------------EPKLIRRSWTEIDREIEA-YNEALNCEQDETPIVACPVTHSYGLICGVLAALTR 167 (414)
T ss_pred CCceEEEECCCCCC------------CCcEEEEehHhHHHHHHH-HHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHc
Confidence 88999999999999 999999999987665554 44567888999999999999999987788999999
Q ss_pred CcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHH
Q psy8076 337 GITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEK 416 (737)
Q Consensus 337 G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~ 416 (737)
|+++++.+. .++..+++.++++++|++.++|+++..|.+.... ..+++.+++||+++++++.+++.+
T Consensus 168 G~~~~~~~~-----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--------~~~l~~~~~~G~~l~~~~~~~~~~ 234 (414)
T PRK08308 168 GSKPVIITN-----KNPKFALNILRNTPQHILYAVPLMLHILGRLLPG--------TFQFHAVMTSGTPLPEAWFYKLRE 234 (414)
T ss_pred CCEEEecCC-----CCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc--------cccccEEEEccCCCCHHHHHHHHH
Confidence 999999863 6899999999999999999999999999875432 136889999999999999999987
Q ss_pred hcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCC
Q psy8076 417 SFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQN 496 (737)
Q Consensus 417 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (737)
. +.++++.||+||++..... .....+ .++|+|++++. ++
T Consensus 235 ~-~~~~~~~YG~tE~~~~~~~------~~~~~~-~~~G~p~~~~~-----~~---------------------------- 273 (414)
T PRK08308 235 R-TTYMMQQYGCSEAGCVSIC------PDMKSH-LDLGNPLPHVS-----VS---------------------------- 273 (414)
T ss_pred h-CChhhhccCccccCCeeec------CCCCCC-CccCccCCCeE-----EE----------------------------
Confidence 6 5789999999999853322 111233 67899998887 66
Q ss_pred CcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeec
Q psy8076 497 ATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARD 576 (737)
Q Consensus 497 ~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~ 576 (737)
+.++ .++.|||++++. ++||+|||+|++++||+++|+||.
T Consensus 274 ----------~~~~------~~~~gel~v~~~------------------------~~~~~TGDl~~~~~dg~l~~~GR~ 313 (414)
T PRK08308 274 ----------AGSD------ENAPEEIVVKMG------------------------DKEIFTKDLGYKSERGTLHFMGRM 313 (414)
T ss_pred ----------EecC------CCCCceEEEEcC------------------------CceEECCceEEECCCccEEEeccc
Confidence 6553 356799999864 689999999999999999999999
Q ss_pred CCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccc
Q psy8076 577 DDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIR 656 (737)
Q Consensus 577 dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (737)
||+||++|++|+|.|||++|.++|+|.+++|++++++..++.++++++.... .
T Consensus 314 ~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~~------------~--------------- 366 (414)
T PRK08308 314 DDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHEE------------I--------------- 366 (414)
T ss_pred CCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCC------------C---------------
Confidence 9999999999999999999999999999999999998888889998886543 1
Q ss_pred cccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHH
Q psy8076 657 VLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIV 718 (737)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~ 718 (737)
..++++++++++|+.|++|..++++++||+|++||++|+.|+
T Consensus 367 --------------------~~~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~~~ 408 (414)
T PRK08308 367 --------------------DPVQLREWCIQHLAPYQVPHEIESVTEIPKNANGKVSRKLLE 408 (414)
T ss_pred --------------------CHHHHHHHHHHhCccccCCcEEEEeccCCCCCCcCeehhhhh
Confidence 146788899999999999999999999999999999999543
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-57 Score=501.29 Aligned_cols=434 Identities=22% Similarity=0.305 Sum_probs=357.6
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCC
Q psy8076 111 TYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASC 190 (737)
Q Consensus 111 Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~ 190 (737)
||+||+++++++|+.|.+.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++..++++++++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHHHhhcC--CCCCccccCCCCeEEEecCCC
Q psy8076 191 GVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRL--SHRCVPVEANDPLYILYTSGT 268 (737)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGT 268 (737)
.... .+. ...+........ .........+++++++|||||
T Consensus 81 ~~~~--~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt 122 (436)
T TIGR01923 81 LEEK--DFQ------------------------------------ADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGT 122 (436)
T ss_pred cccc--cee------------------------------------ecchHhhhhcccccccccccCCcCceEEEEeCCCC
Confidence 2110 000 000000000000 011223566899999999999
Q ss_pred CCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCC
Q psy8076 269 TGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPD 348 (737)
Q Consensus 269 TG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~ 348 (737)
|| .||+|+++|+++...... ....++++++|+++..+|++|..++. .++.++..|+++++.+.
T Consensus 123 TG------------~PK~v~~s~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~~--- 185 (436)
T TIGR01923 123 TG------------KPKAVPHTFRNHYASAVG-SKENLGFTEDDNWLLSLPLYHISGLS-ILFRWLIEGATLRIVDK--- 185 (436)
T ss_pred CC------------CCcEEEEehHHHHHHHHH-HHhhcCCCCCceEEEccCcHhHHHHH-HHHHHHhcCceEEecch---
Confidence 99 999999999887665554 45568999999999999999998864 57899999999999763
Q ss_pred CCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccc
Q psy8076 349 RTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQ 428 (737)
Q Consensus 349 ~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~ 428 (737)
...+++.++++++|++.++|+++..|.+.... .+++|.+++||+++++++.+++.+ ++..+++.||+
T Consensus 186 ----~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~--------~~~l~~~~~~G~~~~~~~~~~~~~-~~~~~~~~YG~ 252 (436)
T TIGR01923 186 ----FNQLLEMIANERVTHISLVPTQLNRLLDEGGH--------NENLRKILLGGSAIPAPLIEEAQQ-YGLPIYLSYGM 252 (436)
T ss_pred ----HHHHHHHHHHhCCeEEEeHHHHHHHHHhCcCC--------CCceEEEEECCCCCCHHHHHHHHH-hCCceeeEecC
Confidence 24899999999999999999999999876432 168999999999999999998875 59999999999
Q ss_pred cccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEE
Q psy8076 429 TETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRII 508 (737)
Q Consensus 429 TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iv 508 (737)
||++..++.... .....+ .++|.|+++++ ++ |.
T Consensus 253 tE~~~~~~~~~~--~~~~~~--~~~G~~~~~~~-----~~--------------------------------------i~ 285 (436)
T TIGR01923 253 TETCSQVTTATP--EMLHAR--PDVGRPLAGRE-----IK--------------------------------------IK 285 (436)
T ss_pred CccchhccCcCc--cccccc--cCCCccCCCcE-----EE--------------------------------------EE
Confidence 999876554322 111122 24788888877 65 63
Q ss_pred cCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEec
Q psy8076 509 RNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLS 588 (737)
Q Consensus 509 d~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~ 588 (737)
+++. ++.|||+++|+ .++.||+++++.+...+ .+|||+|||+++++.||++++.||.||+||++|++|+
T Consensus 286 ~~~~-----~~~Gel~v~~~---~~~~gy~~~~~~~~~~~---~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~ 354 (436)
T TIGR01923 286 VDNK-----EGHGEIMVKGA---NLMKGYLYQGELTPAFE---QQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIY 354 (436)
T ss_pred eCCC-----CCceEEEEECC---ccchhhCCChhhhhhhh---cCCCeeccceEEEcCCCCEEEeccccCeEEeCCEeeC
Confidence 3222 27799999999 89999999777664432 3689999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCccc
Q psy8076 589 TSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSI 668 (737)
Q Consensus 589 ~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (737)
+.+||++|.++|.|.+++|++.+++..++.+++++++.++ .
T Consensus 355 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~------------~--------------------------- 395 (436)
T TIGR01923 355 PEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESD------------I--------------------------- 395 (436)
T ss_pred HHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECCC------------C---------------------------
Confidence 9999999999999999999999887777888888887654 1
Q ss_pred ccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHH
Q psy8076 669 YCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSI 717 (737)
Q Consensus 669 ~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l 717 (737)
..+++.+++++.|+.+++|..++++++||+|++||++|++|
T Consensus 396 --------~~~~l~~~l~~~l~~~~~p~~i~~~~~iP~t~~GK~~r~~L 436 (436)
T TIGR01923 396 --------SQAKLIAYLTEKLAKYKVPIAFEKLDELPYNASGKILRNQL 436 (436)
T ss_pred --------CHHHHHHHHHHhhhCCCCCeEEEEecCCCCCCCCceecccC
Confidence 14578888999999999999999999999999999999865
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >KOG1180|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-57 Score=467.99 Aligned_cols=543 Identities=18% Similarity=0.216 Sum_probs=413.8
Q ss_pred HHHHHHhhhhhccCCCceEEEEeC-----------------CCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCE-EEE
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDS-----------------PVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDR-VLI 139 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~-----------------~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~-V~i 139 (737)
++++++++.++++ .++.++-+.+ -.-+....+||.|+.+++.++|++|.+.|++++++ |+|
T Consensus 42 Tl~~~~~~~~~k~-g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~i 120 (678)
T KOG1180|consen 42 TLYELFEECVKKF-GKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAI 120 (678)
T ss_pred cHHHHHHHHHHhc-CCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 5666666666666 6666653221 01255789999999999999999999999997776 999
Q ss_pred EecCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEE
Q psy8076 140 YMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCI 219 (737)
Q Consensus 140 ~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 219 (737)
+++.+.+|+++++||++.+...|.+...++.+.+.+-|++++++.++|+.+ +...+...++.++ .++++|
T Consensus 121 Fa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~---------LL~kl~~~l~~~~-~vk~II 190 (678)
T KOG1180|consen 121 FAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSE---------LLPKLKAPLKQAK-TVKHII 190 (678)
T ss_pred EecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHH---------HHHHHHHHHhccC-ceeEEE
Confidence 999999999999999999999999999999999999999999999999986 3445566666666 888999
Q ss_pred EEecccc----cccc---cCCCCcccHHHHHhhcCCC--CCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeecc
Q psy8076 220 IFQRRCV----EEAE---LTPGYDILWDDALAQRLSH--RCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRP 290 (737)
Q Consensus 220 v~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~t 290 (737)
.++..+- +... -.....++++++.+-.... ++.+..|+|+|+||||||||| .||||+++
T Consensus 191 ~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG------------~PKGVml~ 258 (678)
T KOG1180|consen 191 YFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTG------------LPKGVMLT 258 (678)
T ss_pred EecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCC------------CCceEEEe
Confidence 8885211 1111 1223456788887766553 455568899999999999999 99999999
Q ss_pred CchhHHHHHHHHhhhhcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChh-HHH----HHHHhcCC
Q psy8076 291 VGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPS-QYY----RVIHNHKV 365 (737)
Q Consensus 291 h~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~-~~~----~~i~~~~v 365 (737)
|.|+++.+.........+.+.|+++.++|+.|+.-+.++ +.+++.|+++-..+.... .|.. .+. --+...++
T Consensus 259 H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE-~~~ft~G~~iGY~S~~TL--tdts~ki~kg~kGD~~~lkP 335 (678)
T KOG1180|consen 259 HSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAE-LVCFTWGGRIGYSSPLTL--TDTSSKIKKGCKGDLTELKP 335 (678)
T ss_pred cccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHH-HHHHhhCCEeecCCccee--cccchhhccCCcCccccccc
Confidence 999999888877777789999999999999999998886 567889988877654322 1111 111 13567899
Q ss_pred cEEeecHHHHHHHHHcCCCCc--------------------------cc------------cCCCCCCccEEEeecCCCC
Q psy8076 366 NGLFTAPTALRVIRREDKDST--------------------------LG------------AQYSTDSLRYLFVAGEHCD 407 (737)
Q Consensus 366 t~l~~~P~~~~~l~~~~~~~~--------------------------~~------------~~~~l~~Lr~i~~gGe~l~ 407 (737)
|++.++|+.+..+.+.-.... .. ...-=..||++++||++|+
T Consensus 336 TiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS 415 (678)
T KOG1180|consen 336 TIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLS 415 (678)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCC
Confidence 999999999977654311000 00 0001168999999999999
Q ss_pred HHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcccccccccccc
Q psy8076 408 HETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESL 487 (737)
Q Consensus 408 ~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (737)
++..+++.-.+.+++.++||.||+++..+.... ..... +.+|.|++-++ ++
T Consensus 416 ~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~----~d~~~-g~vG~pl~c~e-----iK------------------- 466 (678)
T KOG1180|consen 416 PDTQRFMNICFCCPVLQGYGLTETCAAATVLEP----EDFST-GRVGAPLPCCE-----IK------------------- 466 (678)
T ss_pred HHHHHHHHHhccccccccccccchhcccEecCh----hhccc-ccccCCccceE-----EE-------------------
Confidence 999999999999999999999999987766422 22222 67888887777 76
Q ss_pred ccCCCCCCCCcccccceEEEEc-CCCCccCCCc--ceEEEEecCCCCCcccccccChhhhHHhhccCCCC--eeecCceE
Q psy8076 488 RKNVPKGQNATHFTSVEVRIIR-NDGSECEPHE--LGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPG--YYDTMDAG 562 (737)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~--~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g--~~~TGDl~ 562 (737)
++| ++|.--+.+. .|||||+|+ ++..|||++++.|.+.|.. .+| ||+|||+|
T Consensus 467 -------------------Lvdw~EgGY~~~~~PPrGEI~i~G~---~vt~gY~kn~ekT~e~ft~-~~G~~WF~TGDIG 523 (678)
T KOG1180|consen 467 -------------------LVDWEEGGYFAKNKPPRGEILIGGP---NVTMGYYKNEEKTKEDFTV-EDGQRWFRTGDIG 523 (678)
T ss_pred -------------------EEEhhhcCccCCCCCCCceEEecCC---ccChhhhCChhhhhhhcee-cCCcEEEeccccc
Confidence 666 4443333333 699999999 9999999999999999877 567 99999999
Q ss_pred EEecCceEEEEeecCCeEeeC-cEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccc
Q psy8076 563 YYDENGYIYVTARDDDVINVA-GHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGF 641 (737)
Q Consensus 563 ~~~~dG~l~i~GR~dd~Ik~~-G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~ 641 (737)
++.+||.|.|++|++|.+|+. |+.|+++.+|++++..|.|...||.+..... .++++|++++..+.++....++-.
T Consensus 524 e~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~s---~~VaiVVPn~~~lt~lA~k~Gi~~ 600 (678)
T KOG1180|consen 524 EFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNKS---KPVAIVVPNQKHLTKLAEKAGISG 600 (678)
T ss_pred eecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEecccccc---eeEEEEcCCchHHHHHHHHcCCCh
Confidence 999999999999999999987 9999999999999999999999999876543 699999999876555432222211
Q ss_pred cccCCCCccCCCccccccCCCCCCcccccCC--ChHHHHHHHHHHH-HHhcCCceeeeeEEEcCCCC------CCCCchh
Q psy8076 642 GKLERPTSLLTNPIRVLIKPYGPISSIYCTR--SDEEIGKELKELV-REAIGPIAAFKLSTSVTGLP------RTRSGKT 712 (737)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l-~~~l~~~~~p~~~~~v~~lP------~t~sGKi 712 (737)
. +-..+|+. -..+..++|.++- .++|..+.+|..|++.++-- .|..-|+
T Consensus 601 ~----------------------~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPenGlvT~A~KL 658 (678)
T KOG1180|consen 601 S----------------------TWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPEPWTPENGLVTAALKL 658 (678)
T ss_pred h----------------------hHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecCCCcCCCccccHHHHHh
Confidence 0 11111211 1223334454444 45789999999999887632 3455599
Q ss_pred hHHHHHHHHcC
Q psy8076 713 ARKSIVDMARN 723 (737)
Q Consensus 713 ~R~~l~~~~~~ 723 (737)
.|+.++..|.+
T Consensus 659 KRk~I~~~~k~ 669 (678)
T KOG1180|consen 659 KRKEILAAYKK 669 (678)
T ss_pred hHHHHHHHHHH
Confidence 99999988865
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-55 Score=481.42 Aligned_cols=411 Identities=30% Similarity=0.434 Sum_probs=318.8
Q ss_pred HhhhhhccCCCceEEEE-eCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEE
Q psy8076 83 IDRHVERGMAKKVALIH-DSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIH 161 (737)
Q Consensus 83 l~~~~~~~~pd~~Al~~-~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~ 161 (737)
|+++++++ ||++|+++ . .+.+||+||+++++++|..|.++|+++|++|+++++|++++++++|||+++|+++
T Consensus 1 f~~~a~~~-pd~~a~~~~~------~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~ 73 (417)
T PF00501_consen 1 FERQAQRY-PDRIALIDDE------GRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIP 73 (417)
T ss_dssp HHHHHHHS-TTSEEEEETT------TEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EE
T ss_pred ChhHHhhC-CCceEEEECC------CEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeecccccccccc
Confidence 57888888 99999999 4 4999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHH
Q psy8076 162 SVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDD 241 (737)
Q Consensus 162 vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~ 241 (737)
+|++|.++.+++.+++++++++++|+ .+..+ ... ...+........ ....++.++.... .....
T Consensus 74 v~l~~~~~~~~~~~~l~~~~~~~ii~-~~~~d---~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~----------~~~~~ 137 (417)
T PF00501_consen 74 VPLDPSLSEDELRHILRQSGPKVIIT-SEAVD---SEP-LKKLKSIFKQED-PSSSIIILDRDDL----------PKKEA 137 (417)
T ss_dssp EEEETTSSHHHHHHHHHHHTESEEEE-CHHHS---CHH-HHHHHHHHTTST-TTEEEEEESHSSC----------TTCHH
T ss_pred cccccccccccccccccccceeEEEE-ecccc---ccc-cccchhhhcccc-ccccccccccccc----------ccccc
Confidence 99999999999999999999999998 10000 001 111222222211 3344555543200 00011
Q ss_pred HHhhcCCC-CCcc-ccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHH-hhhhcCCCCcEEEEec
Q psy8076 242 ALAQRLSH-RCVP-VEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTM-SVIYNMGQDDVWWTAS 318 (737)
Q Consensus 242 ~~~~~~~~-~~~~-~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~-~~~~~~~~~d~~l~~~ 318 (737)
+....... ...+ ..++++++++||||||| .||+|.++|++++....... ...++++ |++++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG------------~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~ 203 (417)
T PF00501_consen 138 LKSASLSDEPQSPEDSPDDPAFILFTSGTTG------------KPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFL 203 (417)
T ss_dssp HHHHHHCHCSHSTTHTTTSEEEEEEESSSSS------------SEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS
T ss_pred ccccccccccccCCCCccceeEeeccccccc------------cccccccccccccccccccccccccccC--ceEEeec
Confidence 11111000 0000 15699999999999999 99999999988766655422 2223334 6999999
Q ss_pred ccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccE
Q psy8076 319 DMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRY 398 (737)
Q Consensus 319 ~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~ 398 (737)
|++|..|+...++.++..|+++++++.... .++..+++.++++++|++.++|++++.|.+...........++++||.
T Consensus 204 p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~ 281 (417)
T PF00501_consen 204 PLSHIFGLISALLAALFSGATLVLPSPFDL--FDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRT 281 (417)
T ss_dssp -TTSHHHHHHHHHHHHHCTSEEEEESSHHH--HHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SE
T ss_pred cccccccccccccccccccccccccccccc--cccccchhcccccccccccccccccccccccccccccccccccccccc
Confidence 999999976779999999999999985322 235779999999999999999999999987432210012347889999
Q ss_pred EEeecCCCCHHHHHHHHHhcCC-cccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcc
Q psy8076 399 LFVAGEHCDHETKNWAEKSFNV-TMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRA 477 (737)
Q Consensus 399 i~~gGe~l~~~~~~~~~~~~~~-~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~ 477 (737)
+++||+++++++.+++++.++. ++++.||+||++..++.... ......+ +++|.|++|++ ++
T Consensus 282 v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~--~~~~~~~-~~~G~~~~~~~-----~~--------- 344 (417)
T PF00501_consen 282 VISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPP--EDDIEKP-GSVGKPLPGVE-----VK--------- 344 (417)
T ss_dssp EEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEET--TTHHSST-TSEBEESTTEE-----EE---------
T ss_pred cccccccCChhhccccccccccccceecccccccceeeecccc--ccccccc-ccccccccccc-----cc---------
Confidence 9999999999999999999987 99999999999988764321 1111233 67899988888 77
Q ss_pred ccccccccccccCCCCCCCCcccccceEEEEcCC-CCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCee
Q psy8076 478 HCVRILPESLRKNVPKGQNATHFTSVEVRIIRND-GSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYY 556 (737)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~-g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~ 556 (737)
|+|++ +++++.|+.|||+|+|| .++.||+++++.+.+.|.. +|||
T Consensus 345 -----------------------------ivd~~~~~~~~~g~~Gei~i~~~---~~~~gy~~~~~~~~~~~~~--~~~~ 390 (417)
T PF00501_consen 345 -----------------------------IVDPNTGEPLPPGEPGEIVIRGP---NVFSGYYNDPELTAEAFID--DGWY 390 (417)
T ss_dssp -----------------------------EECTTTSSBESTTSEEEEEEEST---TSBSEETTBHHHHHHHEET--TSEE
T ss_pred -----------------------------cccccccccccccccccccccCC---ccceeeecccccccccccc--ccce
Confidence 99987 99999999999999999 9999999999999888753 5799
Q ss_pred ecCceEEEecCceEEEEeecCCeEeeC
Q psy8076 557 DTMDAGYYDENGYIYVTARDDDVINVA 583 (737)
Q Consensus 557 ~TGDl~~~~~dG~l~i~GR~dd~Ik~~ 583 (737)
+|||+|++|+||+|+++||.||+||++
T Consensus 391 ~TGD~g~~d~~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 391 RTGDLGRLDEDGYLYILGRSDDMIKVR 417 (417)
T ss_dssp EEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred ecceEEEECCCCeEEEEEeeCCEEEeC
Confidence 999999999999999999999999985
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >KOG1179|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-52 Score=431.95 Aligned_cols=533 Identities=20% Similarity=0.213 Sum_probs=408.4
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|..+++++ |+++|+++.++ .+.+||+|+++.++++|+.|..+|++.||.|+++|+|.+|++...|+++++
T Consensus 78 ti~~~F~~~vrr~-p~k~aii~~~~----~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKl 152 (649)
T KOG1179|consen 78 TIAELFLSQVRRQ-PDKPAIIYEGP----FQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKL 152 (649)
T ss_pred cHHHHHHHHHHhC-CCccEEEEeCC----CceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhh
Confidence 5789999999999 99999999974 489999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++...||++.--+.|.+.++.++++.++++.+ +...+.+....+....-+++..... ..+....
T Consensus 153 Gv~tA~iNtNlR~~~LlHsi~~s~aralv~~~e---------l~~~~~e~~~~l~~~~i~~~~~~~~------~~~~g~~ 217 (649)
T KOG1179|consen 153 GVITAFINTNLRGEPLLHSITVSGARALVVGPE---------LLNALEEILPLLIKNGIHVFSLGPT------SVPDGIE 217 (649)
T ss_pred CceeeeeccccccchhhhhhhhcCceEEEECHH---------HHHHHHhcchhhhhccceEEecCCC------CCCchHH
Confidence 999999999999999999999999999999875 3334444432222121222222211 0111112
Q ss_pred cHHHHHhhcCCCC-----CccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCc
Q psy8076 238 LWDDALAQRLSHR-----CVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDD 312 (737)
Q Consensus 238 ~~~~~~~~~~~~~-----~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d 312 (737)
++...+......+ ....+..++++.|||||||| .||+.+++|..++. .+..+...++++.+|
T Consensus 218 ~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTG------------LPKaAvith~r~~~-~a~g~~~~~g~~~~D 284 (649)
T KOG1179|consen 218 SLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTG------------LPKAAVITHLRYLQ-GAAGFYYVFGMTADD 284 (649)
T ss_pred HHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCC------------CCHHHHHHHHHHHH-HHHHHHHHhCCCccc
Confidence 2222232222211 22355678999999999999 99999999976443 333356679999999
Q ss_pred EEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCC
Q psy8076 313 VWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYS 392 (737)
Q Consensus 313 ~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~ 392 (737)
+++.++|++|.+|.+.++.++|..|+|+|+-. +++...+|+-..+|+||+....--+.+.|++.+... ...
T Consensus 285 vvY~~lPLYHsaa~ilGi~~~l~~GaT~Vlrk-----KFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~----~er 355 (649)
T KOG1179|consen 285 VVYTTLPLYHSAAGILGIGGCLLHGATVVLRK-----KFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSP----EER 355 (649)
T ss_pred eEEEcchhHHHHHHHHHHHHHHhcCceEEEec-----ccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCCh----hhc
Confidence 99999999999999999999999999999976 589999999999999999999999999999987653 223
Q ss_pred CCCccEEEeecCCCCHHHHHHHHHhcCC-cccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeec
Q psy8076 393 TDSLRYLFVAGEHCDHETKNWAEKSFNV-TMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLN 471 (737)
Q Consensus 393 l~~Lr~i~~gGe~l~~~~~~~~~~~~~~-~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~ 471 (737)
-..+|..+ |.-+.+++++.|.++||. +|.+.||+||.......... + .+.+|+----.. . ++
T Consensus 356 ~HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~d~-------~-vGA~G~~~~~~~-~---l~--- 418 (649)
T KOG1179|consen 356 QHKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNYDG-------R-VGACGFMSRLLK-L---LY--- 418 (649)
T ss_pred CceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeeecC-------c-cccccchhhhhh-h---cc---
Confidence 45677665 777999999999999996 59999999999854443211 1 134443211000 0 00
Q ss_pred cccCccccccccccccccCCCCCCCCcccccceEEEEcCCCC--ccCCCcceEEEEec--CCCCCcccccccChhhhHH-
Q psy8076 472 WLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGS--ECEPHELGRIVVKL--PLPPGTMSTLYKAPQRFMK- 546 (737)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~--~~~~g~~GEL~i~g--~~~~~~~~gy~~~~~~~~~- 546 (737)
.-.-.+.+...+++ |.|++|- +|++||+|.|+-+= .-|..-+.||.+..+.+.+
T Consensus 419 -----------p~~LIk~D~~t~E~----------iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kK 477 (649)
T KOG1179|consen 419 -----------PFRLIKVDPETGEP----------IRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKK 477 (649)
T ss_pred -----------ceEEEEecCCCCce----------eecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhh
Confidence 00011111222222 6777774 78899999765442 1123448999997655544
Q ss_pred ---hhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCC-CcceEEE
Q psy8076 547 ---IYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTK-GEIPFCL 622 (737)
Q Consensus 547 ---~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~-~~~~~a~ 622 (737)
..|.+.|-||.|||+-.+|..|++||.+|..|.+.-+|++|+..|+|.+|....+++|+.|+|+.-|.. |..=.|.
T Consensus 478 l~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAa 557 (649)
T KOG1179|consen 478 LLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAA 557 (649)
T ss_pred hHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEE
Confidence 446666779999999999999999999999999999999999999999999999999999999987653 4445566
Q ss_pred EEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcC
Q psy8076 623 YIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVT 702 (737)
Q Consensus 623 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~ 702 (737)
|+..+. .+.....+-+++++.||+|+.|..+.+.+
T Consensus 558 I~~~p~---------------------------------------------~~~d~~~l~~~l~~~LP~YA~P~FlRl~~ 592 (649)
T KOG1179|consen 558 IVLDPT---------------------------------------------TEKDLEKLYQHLRENLPSYARPRFLRLQD 592 (649)
T ss_pred EEecCc---------------------------------------------ccchHHHHHHHHHhhCccccchHHHHHHh
Confidence 665554 23457789999999999999999999999
Q ss_pred CCCCCCCchhhHHHHHHH-HcCCCCCchhhhhcc
Q psy8076 703 GLPRTRSGKTARKSIVDM-ARNKPLRVRLVYLQQ 735 (737)
Q Consensus 703 ~lP~t~sGKi~R~~l~~~-~~~~~~~~~~~~~~~ 735 (737)
++++|.+=|..+..|.+. |.-..+.|.+.++++
T Consensus 593 ~i~~TgTFKl~K~~L~~egf~p~~~~dply~~~~ 626 (649)
T KOG1179|consen 593 EIEKTGTFKLQKTELQKEGFNPAIISDPLYYLDN 626 (649)
T ss_pred hhhcccchhhHHHHHHHccCCccccCCceEEEec
Confidence 999999999999999876 455556666665554
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-51 Score=448.07 Aligned_cols=397 Identities=24% Similarity=0.320 Sum_probs=326.1
Q ss_pred cHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcC
Q psy8076 111 TYAELQEQVSLLAGSLAA-IGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAAS 189 (737)
Q Consensus 111 Ty~eL~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~ 189 (737)
||.||.+.++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 899999999999999998 8999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHHHhhcCC--CCCccccCCCCeEEEecCC
Q psy8076 190 CGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLS--HRCVPVEANDPLYILYTSG 267 (737)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSG 267 (737)
........ .....+.+... +......... .......++++++++||||
T Consensus 81 ~~~~~~~~----------------~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG 130 (408)
T TIGR01733 81 ALASRLAG----------------LVLPIILVDPL--------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSG 130 (408)
T ss_pred chhhhccc----------------cCCceEEechh--------------hhhhcccccccccccCCCCCCCcEEEEEcCC
Confidence 53321110 01111221110 0000000000 0111135789999999999
Q ss_pred CCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCC
Q psy8076 268 TTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKP 347 (737)
Q Consensus 268 TTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~ 347 (737)
||| .||+|+++|++++..... ....++++.+|+++...|++|..++ +.++.++..|+++++++...
T Consensus 131 TtG------------~pK~v~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~~~~~~~~ 196 (408)
T TIGR01733 131 STG------------RPKGVVVTHRSLVNLLAW-LARRYGLDPDDRVLQFASLSFDASV-EEIFGTLLAGATLVVPPEDE 196 (408)
T ss_pred CCC------------CCCEEEeccHHHHHHHHH-HHHhcCCCCCceEEEecCCccchhH-HHHHHHHhCCCEEEEcChhh
Confidence 999 999999999886655554 4457888999999999999999985 45899999999999987643
Q ss_pred CCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcC-Ccccccc
Q psy8076 348 DRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFN-VTMLNHW 426 (737)
Q Consensus 348 ~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~-~~i~~~Y 426 (737)
. ..+..+.+.++++++|.+.++|.+++.|.+... ..+++||.+++||+++++++.+++.+.++ ..+++.|
T Consensus 197 ~--~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~-------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~Y 267 (408)
T TIGR01733 197 E--RDAALLAALIAEHPVTVLNLTPSLLALLAAALP-------PALASLRLVILGGEALTPALVDRWRARGPGARLINLY 267 (408)
T ss_pred c--cCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhh-------hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecc
Confidence 3 257899999999999999999999999988643 35789999999999999999999999997 8999999
Q ss_pred cccccccccccccccCCCCCC-CCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceE
Q psy8076 427 WQTETGHSITAHCLGYQHDTV-PPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEV 505 (737)
Q Consensus 427 G~TE~~~~~~~~~~~~~~~~~-~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (737)
|+||++..++........... ++ .++|.|++++. ++
T Consensus 268 G~tE~g~~~~~~~~~~~~~~~~~~-~~~G~~~~~~~-----~~------------------------------------- 304 (408)
T TIGR01733 268 GPTETTVWSTATLVDADDAPRESP-VPIGRPLANTR-----LY------------------------------------- 304 (408)
T ss_pred cCCceEEEEEEEEcCccccCCccc-cccCcccCCce-----EE-------------------------------------
Confidence 999999776543332111111 13 67888888887 77
Q ss_pred EEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhcc----CCCC--eeecCceEEEecCceEEEEeecCCe
Q psy8076 506 RIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFT----KFPG--YYDTMDAGYYDENGYIYVTARDDDV 579 (737)
Q Consensus 506 ~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~----~~~g--~~~TGDl~~~~~dG~l~i~GR~dd~ 579 (737)
|+|+++++++.|+.|||+|+|+ .++.||+++++.+.+.|.. ..+| ||+|||++++|++|++++.||.||+
T Consensus 305 -i~~~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~ 380 (408)
T TIGR01733 305 -VLDDDLRPVPVGVVGELYIGGP---GVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQ 380 (408)
T ss_pred -EECCCCCCCCCCCceEEEecCc---cccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCE
Confidence 9999999999999999999999 9999999999888776543 2234 9999999999999999999999999
Q ss_pred EeeCcEEechHHHHHHHhcCCCcceeEE
Q psy8076 580 INVAGHRLSTSALEDVVLSHPDVGDTAV 607 (737)
Q Consensus 580 Ik~~G~rv~~~eIE~~l~~~p~V~~a~v 607 (737)
|+++|++|+|.|||+++.+||.|.+|+|
T Consensus 381 i~~~G~~v~~~~ie~~l~~~~~v~~~~v 408 (408)
T TIGR01733 381 VKIRGYRIELGEIEAALLRHPGVREAVV 408 (408)
T ss_pred EEeCeEEechHHHHHHHhcCcchhhhcC
Confidence 9999999999999999999999999875
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=453.81 Aligned_cols=477 Identities=18% Similarity=0.220 Sum_probs=385.1
Q ss_pred eeeeeeecccccccccccCC-hhHHHHHHHHHhhChhhHHHHHHhhcccccCccccccCCCCCCCCCCCCCchhHHHHHH
Q psy8076 5 KCDISLDFSGNKINECTSNQ-NDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAI 83 (737)
Q Consensus 5 ~~~~~~~y~~~~~~~~~~~~-~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~l 83 (737)
++.++++|...+|++.++++ ..+|..++.....+|+..+.++. .+...+. ..++ . .+..-.....++.+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~-ll~~~e~-----~~~~-~--~~~~~~~~~~i~~~f 233 (642)
T COG1020 163 GLRLSFDYARELFDAETIERELRHFLQLLAALADAPRTSLSALP-LLLPSER-----EVWN-A--LAAPIPLRLTIHLLF 233 (642)
T ss_pred ceEEEEEeecccCCHHHHHHHHHHHHHHHHHHHhCcccCcccCC-CCCHHHH-----hhcc-c--cccCCCccchHHHHH
Confidence 46788999999999999888 67899999999999996555552 2222222 1122 1 111112223688999
Q ss_pred hhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEe
Q psy8076 84 DRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSV 163 (737)
Q Consensus 84 ~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vp 163 (737)
..++... |+++|+++.+ ..+||+||..+++++|+.|.+.|++++++|+++++++.+++++++|++++|+.|+|
T Consensus 234 ~~~a~~~-p~~~a~~~~~------~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yvP 306 (642)
T COG1020 234 EEQAATT-PDAVALVRGG------QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVP 306 (642)
T ss_pred HHHHHhC-CCceeEecCC------CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEec
Confidence 9999999 9999999875 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHHH
Q psy8076 164 VFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDAL 243 (737)
Q Consensus 164 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~ 243 (737)
++|.+|.+++.+++++++++.++++............ +.+... .+.
T Consensus 307 ~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~-------------~~~--- 352 (642)
T COG1020 307 LDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLPG------------------LALDDA-------------LSE--- 352 (642)
T ss_pred CCCCChHHHHHHHHhhcCccEEEeccccccccccCCc------------------cccccc-------------ccc---
Confidence 9999999999999999999999998432110000000 000000 000
Q ss_pred hhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccc
Q psy8076 244 AQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWV 323 (737)
Q Consensus 244 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 323 (737)
............+++.+|++||||||| +||||+++|++......+ +...+.++.+|+++...++.|+
T Consensus 353 ~~~~~~~~~~~~~~~~ayiiytsgstg------------~Pkgv~~~h~~~~~~~~~-~~~~~~~~~~d~~l~~~s~~fD 419 (642)
T COG1020 353 IPDTDPIPQALLGDALAYIIYTSGSTG------------QPKGVRIEHRALANLLND-AGARFGLDADDRVLALASLSFD 419 (642)
T ss_pred CCccCcccccCCCCCeEEEEEccCCCC------------CCCCceecCHHHHHHHHH-HHHhcCCCcccEEeecCCcccc
Confidence 000000112345689999999999999 999999999887764444 5555999999999999999999
Q ss_pred cchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeec
Q psy8076 324 VGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAG 403 (737)
Q Consensus 324 ~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gG 403 (737)
.+ ++.++.++..|+++++.+.... .++..+.+.++++++|++..+|.++..+........ .......+|.+++||
T Consensus 420 ~~-~~~~f~~l~~G~~l~~~~~~~~--~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~--~~~~~~~lr~~~~gG 494 (642)
T COG1020 420 AS-VFEIFGALLEGARLVLAPALLQ--VDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPD--LISPCERLRQLLSGG 494 (642)
T ss_pred hh-HHHHHHHHhCCCEEEecCcccc--CCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhcc--ccCCcccccEEEEcC
Confidence 98 7789999999999999886544 789999999999999999999999999987622211 222334599999999
Q ss_pred CCCCHHHHHHHHHhc--CCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcccccc
Q psy8076 404 EHCDHETKNWAEKSF--NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVR 481 (737)
Q Consensus 404 e~l~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~ 481 (737)
|.++.++...+.+.. ...+.|.||+||++...+.......... ..++|+|++|.. ++
T Consensus 495 e~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~---~~piG~p~~n~~-----~~------------- 553 (642)
T COG1020 495 EALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELES---RVPIGRPVANTQ-----LY------------- 553 (642)
T ss_pred CCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCC---CCCcceeeCCCe-----EE-------------
Confidence 999999999888765 3689999999998776665544222222 268999999988 88
Q ss_pred ccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCce
Q psy8076 482 ILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDA 561 (737)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl 561 (737)
|+|+.++++|.|..|||+|.|. ++.+||+++++.+.+.|+.. .+|+|||+
T Consensus 554 -------------------------ild~~~~~~p~gv~gel~i~g~---~~a~gy~~~p~lt~~~f~~~--~~y~tgD~ 603 (642)
T COG1020 554 -------------------------ILDQGLRPLPLGVPGELYIAGL---GLALGYLNRPDLTAERFIAL--RLYRTGDL 603 (642)
T ss_pred -------------------------EECCCCCcCCCCCCeeeEECCc---chhhhhcCChhhhHHHhhhc--cCccCCCe
Confidence 9999999999999999999999 99999999999999999875 59999999
Q ss_pred EEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCC
Q psy8076 562 GYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHP 600 (737)
Q Consensus 562 ~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p 600 (737)
+++++||.++++||.|+|+|++|+||+++|||..+.++|
T Consensus 604 ~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~ 642 (642)
T COG1020 604 ARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP 642 (642)
T ss_pred eeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence 999999999999999999999999999999999998875
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-46 Score=401.72 Aligned_cols=324 Identities=23% Similarity=0.289 Sum_probs=270.3
Q ss_pred ccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccccchhhhhhhc
Q psy8076 254 VEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGP 333 (737)
Q Consensus 254 ~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~ 333 (737)
..++++++++||||||| .||||+++|+++........ .. +...++++...|++|..++. .++.+
T Consensus 32 ~~~~d~a~il~TSGTTG------------~PKgv~~s~~~l~~~~~~~~-~~--~~~~~~~~~~~p~~~~~g~~-~~~~~ 95 (358)
T PRK07824 32 PIDDDVALVVATSGTTG------------TPKGAMLTAAALTASADATH-DR--LGGPGQWLLALPAHHIAGLQ-VLVRS 95 (358)
T ss_pred CCCCCeEEEEeCCCCCC------------CCCEEEecHHHHHHHHHHHH-hc--cCCCCeEEEECChHHHHHHH-HHHHH
Confidence 35689999999999999 99999999988766555432 22 34567889999999999964 47888
Q ss_pred cccCcEEEEecCCCCCCCChhHHHHHHHhcC--CcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHH
Q psy8076 334 LAAGITSVMYEGKPDRTPDPSQYYRVIHNHK--VNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETK 411 (737)
Q Consensus 334 L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~--vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~ 411 (737)
+..|+++++..... .+++..+++.+++++ +++...+|..+..+..... ...+++++|.+++||+++++++.
T Consensus 96 l~~g~~~v~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~-----~~~~~~~l~~i~~gG~~l~~~~~ 168 (358)
T PRK07824 96 VIAGSEPVELDVSA--GFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA-----ATAALAELDAVLVGGGPAPAPVL 168 (358)
T ss_pred HHcCCeEEecCcCC--CcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc-----ccCCcccceEEEECCCCCCHHHH
Confidence 99999988854322 368999999999998 5666778888877665432 22367899999999999999999
Q ss_pred HHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCC
Q psy8076 412 NWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNV 491 (737)
Q Consensus 412 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (737)
+++.+ ++.++++.||+||++..+ ...|.|++|++ ++
T Consensus 169 ~~~~~-~~~~v~~~YG~TE~~~~~---------------~~~G~~~~g~~-----v~----------------------- 204 (358)
T PRK07824 169 DAAAA-AGINVVRTYGMSETSGGC---------------VYDGVPLDGVR-----VR----------------------- 204 (358)
T ss_pred HHHHh-cCCcEEecccCCccCCCc---------------CcCceeCCCCE-----EE-----------------------
Confidence 98875 589999999999987432 23578888887 66
Q ss_pred CCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEE
Q psy8076 492 PKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIY 571 (737)
Q Consensus 492 ~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~ 571 (737)
|.| |||+++|+ .++.||+++++... +. .+|||+|||+|++ .+|+++
T Consensus 205 ---------------i~~-----------Gei~v~g~---~~~~gY~~~~~~~~---~~-~~g~~~TGDl~~~-~~g~l~ 250 (358)
T PRK07824 205 ---------------VED-----------GRIALGGP---TLAKGYRNPVDPDP---FA-EPGWFRTDDLGAL-DDGVLT 250 (358)
T ss_pred ---------------ecC-----------CEEEEecC---ccccccCCCccccc---cc-CCCceecccEEEE-eCCEEE
Confidence 622 89999999 99999999886432 22 3689999999999 899999
Q ss_pred EEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccC
Q psy8076 572 VTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLL 651 (737)
Q Consensus 572 i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (737)
|.||.||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++++++.... .
T Consensus 251 i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~------------~---------- 308 (358)
T PRK07824 251 VLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGG------------P---------- 308 (358)
T ss_pred EEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCC------------C----------
Confidence 999999999999999999999999999999999999999998889999999976543 1
Q ss_pred CCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHHHcC
Q psy8076 652 TNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARN 723 (737)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~ 723 (737)
....++|++++++.|+.+++|..++++++||+|++||++|++|++++.+
T Consensus 309 -----------------------~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 357 (358)
T PRK07824 309 -----------------------APTLEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFAG 357 (358)
T ss_pred -----------------------CcCHHHHHHHHHhhCccccCCCEEEEecCCCCCCCccccHHHHHHHhhc
Confidence 1235789999999999999999999999999999999999999999865
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=424.42 Aligned_cols=511 Identities=12% Similarity=0.076 Sum_probs=354.8
Q ss_pred CCCCCCchhHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHH
Q psy8076 69 KWFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAI 148 (737)
Q Consensus 69 ~~~~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~v 148 (737)
+|-+.....++.++|++.++++ |+++|+.... ..+.++.+||+|+.++++++|++|.++|+++||+|+|+++|++||+
T Consensus 419 ~~~~~~~~~Tl~dll~~~a~~~-pd~~al~~~~-~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewv 496 (1452)
T PTZ00297 419 EYNPLAGVRSLGEMWERSVTRH-STFRCLGQTS-ESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIV 496 (1452)
T ss_pred cCCCcccCCCHHHHHHHHHHHC-CCCeEEEEec-cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Confidence 4545555567889999999998 9999996431 0233578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccc
Q psy8076 149 VSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEE 228 (737)
Q Consensus 149 va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~ 228 (737)
++.+||+++|++.||+++ +.+++.+++++++++++|++... ...+.+ .....++++++++......
T Consensus 497 ia~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~---------l~kl~~---i~~~~Lr~IIv~d~~~~~~ 562 (1452)
T PTZ00297 497 ILEVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNS---------VAAILT---CRSRKLETVVYTHSFYDED 562 (1452)
T ss_pred HHHHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhH---------HHHHHh---hcccCCcEEEEECCCcccc
Confidence 999999999999999975 46789999999999999997542 122222 2222678888885321100
Q ss_pred c-ccC---CCCcccHHHHHhhcCC---CCCccccCCCCeEEEe---cCCCCCCCCcccCcccCCCCceeeccCchhHHHH
Q psy8076 229 A-ELT---PGYDILWDDALAQRLS---HRCVPVEANDPLYILY---TSGTTGKPQGCSELRSEDQPKGILRPVGGHIATL 298 (737)
Q Consensus 229 ~-~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~i~~---TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~ 298 (737)
. ... ....+.|+++...... .......++|++.|+| |||||| .||||++||+|++.+.
T Consensus 563 ~~~~~~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG------------~PKGVmLTH~Nlla~~ 630 (1452)
T PTZ00297 563 DHAVARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGD------------GLAVVRVTHADVLRDI 630 (1452)
T ss_pred cccccccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCc------------CCcEEEEeHHHHHHHH
Confidence 0 000 1123568888765431 1122347889999996 999999 9999999999988777
Q ss_pred HHHHhhh--hcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHH
Q psy8076 299 AWTMSVI--YNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALR 376 (737)
Q Consensus 299 ~~~~~~~--~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~ 376 (737)
....... ....++|+++.++|++|+++... .+.++..|++++. .++..+++.|+++++|+++++|.++.
T Consensus 631 ~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er~~-~~~~l~~G~~I~~--------~d~~~lledL~~~rPTv~~~VPrv~e 701 (1452)
T PTZ00297 631 STLVMTGVLPSSFKKHLMVHFTPFAMLFNRVF-VLGLFAHGSAVAT--------VDAAHLQRAFVKFQPTILVAAPSLFS 701 (1452)
T ss_pred HHHhhhccccCCCCCCEEEEechHHHHHHHHH-HHHHHHcCCEEEe--------CCHHHHHHHHHHHCCEEEEecHHHHH
Confidence 6543321 24567899999999999998544 6778899998863 46889999999999999999999998
Q ss_pred HHHHcCCCCcc----------------------ccCCC---------------C-CCccEEEeecC--CCCHHHHHHHHH
Q psy8076 377 VIRREDKDSTL----------------------GAQYS---------------T-DSLRYLFVAGE--HCDHETKNWAEK 416 (737)
Q Consensus 377 ~l~~~~~~~~~----------------------~~~~~---------------l-~~Lr~i~~gGe--~l~~~~~~~~~~ 416 (737)
.+......... ..... + .++|.+++||. +++..+..
T Consensus 702 kI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~---- 777 (1452)
T PTZ00297 702 TSRLQLSRANERYSAVYSWLFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE---- 777 (1452)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC----
Confidence 77543111000 00000 0 57888888873 44433222
Q ss_pred hcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCC
Q psy8076 417 SFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQN 496 (737)
Q Consensus 417 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (737)
+.+++..||+||+. +.+.. ... ...|.|+||++ ++
T Consensus 778 --~i~i~~g~glTE~~---~~~~~----~~~---~~~G~PlpgvE-----vK---------------------------- 812 (1452)
T PTZ00297 778 --HISVCYVPCLREVF---FLPSE----GVF---CVDGTPAPSLQ-----VD---------------------------- 812 (1452)
T ss_pred --CceEEEecceEEee---eecCC----CCc---ccCCeecCceE-----EE----------------------------
Confidence 46677889999943 22211 111 12277777777 66
Q ss_pred CcccccceEEEEcC--CCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEe
Q psy8076 497 ATHFTSVEVRIIRN--DGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTA 574 (737)
Q Consensus 497 ~~~~~~~~~~Ivd~--~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~G 574 (737)
|.|. .+.. +..|||++++ +++++.|.+.+ +||+ +||+|+|+|
T Consensus 813 ----------I~~~~E~~~~---~~~GEIlvr~----------~kdpe~T~e~~----~gW~---------~dG~L~Iid 856 (1452)
T PTZ00297 813 ----------LEPFDEPSDG---AGIGQLVLAK----------KGEPRRTLPIA----AQWK---------RDRTLRLLG 856 (1452)
T ss_pred ----------EcccccccCC---CCCCeEEEEE----------CCChHHHHHhh----CcCc---------cCCeEEEEe
Confidence 8763 2222 2359999974 47888887732 5664 699999999
Q ss_pred ecCCeEeeC-cEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCC-cCCccccccccccCCCCccCC
Q psy8076 575 RDDDVINVA-GHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLD-KMGFSGLIGFGKLERPTSLLT 652 (737)
Q Consensus 575 R~dd~Ik~~-G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 652 (737)
|++|+||.. |++|.|+.||+.+..+|.|.+++|+|...+ .++|+|+++.+.+. +|.....+...
T Consensus 857 RkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k----~lvALVvpd~e~l~~~wa~~~gi~~~---------- 922 (1452)
T PTZ00297 857 PPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSR----PIIAIVSPNRDTVEFEWRQSHCMGEG---------- 922 (1452)
T ss_pred ccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCC----ceEEEEEeCHHHHHHHHHHHcCCCcc----------
Confidence 999999998 999999999999999999999999987554 48999999876554 33322211100
Q ss_pred CccccccCCCCCCcc--cccCCChHHHHHHHHHHHHH--hcCCceeeeeEEEc-CCC-----CCCCCchhhHHHHHHHHc
Q psy8076 653 NPIRVLIKPYGPISS--IYCTRSDEEIGKELKELVRE--AIGPIAAFKLSTSV-TGL-----PRTRSGKTARKSIVDMAR 722 (737)
Q Consensus 653 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~--~l~~~~~p~~~~~v-~~l-----P~t~sGKi~R~~l~~~~~ 722 (737)
........ ..+....+.+.+++. .+.+ .+..+.+++.+.++ ++| -+||+.|+.|+.+.+.|.
T Consensus 923 -------~~~~~~~~~~el~~~~~~~v~~~i~-~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~ 994 (1452)
T PTZ00297 923 -------GGPARQLGWTELVAYASSLLTADFA-CIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFS 994 (1452)
T ss_pred -------ccccccCCHHHHHHhHHHHHHHHHH-HHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHH
Confidence 00000000 000000011222221 2222 35678888877775 355 489999999999998776
Q ss_pred C
Q psy8076 723 N 723 (737)
Q Consensus 723 ~ 723 (737)
+
T Consensus 995 ~ 995 (1452)
T PTZ00297 995 S 995 (1452)
T ss_pred H
Confidence 5
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=348.23 Aligned_cols=302 Identities=19% Similarity=0.194 Sum_probs=236.5
Q ss_pred cccHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCC--CcE
Q psy8076 236 DILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQ--DDV 313 (737)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~--~d~ 313 (737)
.-.|.+++..... +..++++||||||| .||||+++|++++..... +...+++.. .|+
T Consensus 82 ~~~~~~~~~~~~~--------~~~~~i~~TSGTTG------------~PKgV~~sh~~l~~~~~~-~~~~~~~~~~~~dr 140 (386)
T TIGR02372 82 IGEWVDLIAHHST--------PTARFTFATSGSTG------------TPKPVTHSWAALLSEAQA-IAKILGERPPPVRR 140 (386)
T ss_pred HHHHHHHHHhcCC--------CCceEEEECCCCCC------------CCceeEeeHHHHHHHHHH-HHHHhCcCCCCCCe
Confidence 3456666654422 56899999999999 999999999886665544 344566644 468
Q ss_pred EEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCC
Q psy8076 314 WWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYST 393 (737)
Q Consensus 314 ~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l 393 (737)
+++.+|++|..|+.+.++.++..|+++++... +++..+++.++.+ |++.++|++++.|.+.. .++
T Consensus 141 ~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~-----~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~--------~~l 205 (386)
T TIGR02372 141 VISCVPAHHLYGFLFSCLLPSRRGLEAKQLAA-----APASGIMRHARPG--DLIVGTPFIWEQLADLD--------YRL 205 (386)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHCCCeEEecCC-----CChHHHHHhhccC--CEEEECcHHHHHHHhhC--------cCC
Confidence 99999999999987778889999999998763 5778888887654 89999999999997642 245
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhcCC-cccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeecc
Q psy8076 394 DSLRYLFVAGEHCDHETKNWAEKSFNV-TMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNW 472 (737)
Q Consensus 394 ~~Lr~i~~gGe~l~~~~~~~~~~~~~~-~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~ 472 (737)
+++|. ++||+++++++++.+.+. +. .+++.||+||+++..+.. .+ ...|.|+|+.+ +.
T Consensus 206 ~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~---------~~-~~~~~~~p~~~-----~~---- 264 (386)
T TIGR02372 206 PGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLRE---------AP-DDPFRLLPDLA-----CF---- 264 (386)
T ss_pred Cccee-EecCCCCCHHHHHHHHHh-cccchhheecccccccccccc---------CC-CCCcccCCCcc-----cc----
Confidence 67875 688999999999999875 64 699999999998643321 01 23456666655 22
Q ss_pred ccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCC
Q psy8076 473 LDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKF 552 (737)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~ 552 (737)
+ +++.. .|+
T Consensus 265 ----------------------------------~--~~~~~-----------~g~------------------------ 273 (386)
T TIGR02372 265 ----------------------------------A--DTLSS-----------AGL------------------------ 273 (386)
T ss_pred ----------------------------------C--CCccC-----------CCc------------------------
Confidence 2 11110 022
Q ss_pred CCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCc
Q psy8076 553 PGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDK 632 (737)
Q Consensus 553 ~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~ 632 (737)
..|++|||++++|++|+++|+||+||+||++|++|+|.|||++|.+||+|.+++|+. .++.+.++|+++++
T Consensus 274 ~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~~~---- 344 (386)
T TIGR02372 274 ARRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVAED---- 344 (386)
T ss_pred cceeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEECCC----
Confidence 236899999999999999999999999999999999999999999999999998863 35678999988754
Q ss_pred CCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchh
Q psy8076 633 MGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKT 712 (737)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi 712 (737)
.......++|+++++++|+.|+.|..+.++++||+|++||+
T Consensus 345 ---------------------------------------~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~lP~t~~GKi 385 (386)
T TIGR02372 345 ---------------------------------------ADEAELEIELRATAARHLPAPARPDRFRFGTELPRTGAGKL 385 (386)
T ss_pred ---------------------------------------CChHHHHHHHHHHHHHhCCCCCCCcEEEEcccCCCCCCCCc
Confidence 12234567899999999999999999999999999999998
Q ss_pred h
Q psy8076 713 A 713 (737)
Q Consensus 713 ~ 713 (737)
+
T Consensus 386 ~ 386 (386)
T TIGR02372 386 A 386 (386)
T ss_pred C
Confidence 5
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=327.18 Aligned_cols=337 Identities=17% Similarity=0.151 Sum_probs=244.8
Q ss_pred ccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHH--HHhhhhcCCCCcEEEEecccccccchhhhhh
Q psy8076 254 VEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAW--TMSVIYNMGQDDVWWTASDMGWVVGHSYICY 331 (737)
Q Consensus 254 ~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~--~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~ 331 (737)
.+.+++++++||||||| .||+|.++|.++...... .....+++.++|+++...++++..+.....+
T Consensus 72 ~~~~~~~~~~~TSGTTG------------~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~ 139 (422)
T TIGR02155 72 VPREQVVRIHASSGTTG------------KPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHY 139 (422)
T ss_pred CChHHcEEEEECCCCCC------------CCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHH
Confidence 45678899999999999 999999999876544322 1223468889999988777665444333356
Q ss_pred hccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHH
Q psy8076 332 GPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETK 411 (737)
Q Consensus 332 ~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~ 411 (737)
..+..|++++..+. .++..+++.|+++++|++.++|+++..|.+...... ......+||.+++|||++++++.
T Consensus 140 ~~~~~g~~~~~~~~-----~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~--~~~~~~~lr~i~~~ge~l~~~~~ 212 (422)
T TIGR02155 140 GAEKLGCTVVPISG-----GQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMG--IDPAQTSLQVGIFGAEPWTNAMR 212 (422)
T ss_pred HHHHcCcEEEecCC-----CCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcC--CCcccCceEEEEEeCCcCCHHHH
Confidence 67888999887653 457899999999999999999999999876533211 11223589999999999999999
Q ss_pred HHHHHhcCCcccccccccccccc-cccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccC
Q psy8076 412 NWAEKSFNVTMLNHWWQTETGHS-ITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKN 490 (737)
Q Consensus 412 ~~~~~~~~~~i~~~YG~TE~~~~-~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (737)
+++.+.||+++++.||+||+++. +...+. . ...|.+++..
T Consensus 213 ~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~-----~----~~~g~~~~~~------------------------------ 253 (422)
T TIGR02155 213 KEIEARLGMKATDIYGLSEVIGPGVAMECV-----E----TQDGLHIWED------------------------------ 253 (422)
T ss_pred HHHHHHhCCceEecccchhhcCCceeeccc-----c----cCCCceEecC------------------------------
Confidence 99999999999999999998532 222111 0 1112222211
Q ss_pred CCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecC-c
Q psy8076 491 VPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDEN-G 568 (737)
Q Consensus 491 ~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~d-G 568 (737)
+..++|+| ++|+++++|+.|||++++.. . .. + ..+||+|||+++++++ |
T Consensus 254 -----------~~~~eivd~~~g~~v~~Ge~Gelvvt~~~---~------------~~-~--p~~ry~TGDl~~~~~~~G 304 (422)
T TIGR02155 254 -----------HFYPEIIDPHTGEVLPDGEEGELVFTTLT---K------------EA-L--PVIRYRTRDLTRLLPGTA 304 (422)
T ss_pred -----------eeEEEEECCCCCCCCCCCCeeEEEEecCC---c------------cc-c--ceeeEEcCcEEEEECCCC
Confidence 11233999 58999999999999999751 0 11 1 1469999999999876 4
Q ss_pred -----eEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccc
Q psy8076 569 -----YIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGK 643 (737)
Q Consensus 569 -----~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~ 643 (737)
.++|.||.||+||++|.+|+|.|||++|.+||+|...+.+.+......+.+.+.|+...+.... .
T Consensus 305 r~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~~--------~-- 374 (422)
T TIGR02155 305 RTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESYTL--------R-- 374 (422)
T ss_pred CcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecCcccc--------c--
Confidence 4789999999999999999999999999999999856666665554455677777776540000 0
Q ss_pred cCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHH
Q psy8076 644 LERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARK 715 (737)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~ 715 (737)
.......+.++|++.+++.++.+.. ..++.+++||+|+ ||++|.
T Consensus 375 --------------------------~~~~~~~~~~~i~~~~~~~~~~~~~-v~~~~~~~lp~~~-GK~~~~ 418 (422)
T TIGR02155 375 --------------------------LHEQASLLAGEIQHTIKQEVGVSMD-VHLVEPGSLPRSE-GKARRV 418 (422)
T ss_pred --------------------------chHHHHHHHHHHHHHHHhccCcEEE-EEEECCCCccCCC-CCceEE
Confidence 0011234578899999999887743 3444467999988 999763
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >KOG3628|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=306.66 Aligned_cols=555 Identities=16% Similarity=0.155 Sum_probs=395.9
Q ss_pred hHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEecCCHHHHHHHHHHH
Q psy8076 77 NACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAI-GVSAGDRVLIYMPLIPEAIVSMLATV 155 (737)
Q Consensus 77 n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~-Gv~~Gd~V~i~~~~~~e~vva~lA~~ 155 (737)
-++.++|+-+++++ ||.+|+...+..+....++||++|..+|.+++.+|... -+++||.|++++++++|++++++||+
T Consensus 770 ~~ile~Lq~R~a~t-p~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cl 848 (1363)
T KOG3628|consen 770 LTILEILQWRAAKT-PDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACL 848 (1363)
T ss_pred HHHHHHHHHHhhcC-CCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHH
Confidence 57899999999998 99999999887777789999999999999999999977 58999999999999999999999999
Q ss_pred HcCCEEEecCCCCCH------HHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEeccccccc
Q psy8076 156 RLGAIHSVVFGGFAA------RELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEA 229 (737)
Q Consensus 156 ~~G~~~vpl~~~~~~------~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~ 229 (737)
.+|.+++|+.|.... ..+..+++.++++.|+++.......+.- +.. ...... ....+++++..
T Consensus 849 y~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr---~~s-~~~~~s--~~p~i~~~~~~----- 917 (1363)
T KOG3628|consen 849 YLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSR---EAS-AHVDQS--AIPLILVLPKL----- 917 (1363)
T ss_pred hcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhh---hHH-HHhhhh--cchhhhccccc-----
Confidence 999999999976443 5788899999999999987532111110 000 000000 11111111110
Q ss_pred ccCCCCcccHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCC
Q psy8076 230 ELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMG 309 (737)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~ 309 (737)
............+......+.-..++.+||+-|.--++| .--|+.++|.. +.+.+...+....+.
T Consensus 918 --~~t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg------------~l~~~~msHss-lla~Ck~iKe~~~l~ 982 (1363)
T KOG3628|consen 918 --PETIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDG------------MLIGVKMSHSS-LLAFCKIIKETCQLY 982 (1363)
T ss_pred --chhhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCc------------ceeeeeccHHH-HHHHHHHHHHHHccc
Confidence 000000111111111112233356688999999988999 99999999955 777777788888888
Q ss_pred CCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCc---
Q psy8076 310 QDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDST--- 386 (737)
Q Consensus 310 ~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~--- 386 (737)
+..-++.+.+++...|+...++...++|...++.+.... ..+|..|+..|++++|.-++.+-..++.+.+......
T Consensus 983 ~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l-~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl 1061 (1363)
T KOG3628|consen 983 KSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDL-ENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENL 1061 (1363)
T ss_pred cCCceEEEecCccchhHHHHHHHHHHcCCceeecCHHHh-hcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchh
Confidence 888888888888888888778999999999988876544 5789999999999999999999999988876533211
Q ss_pred cccCCCCCCccEEEeecCCCCHHHHHHHHHhc---CC---cccccccccccccccccccccCCCCCCCCCCccCCCcCCC
Q psy8076 387 LGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF---NV---TMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGY 460 (737)
Q Consensus 387 ~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~---~~---~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~ 460 (737)
.....++++ ..++..=|+....+.+-|.+.+ |. .+--.|+.-=. .. ...+ +.. .|.|-
T Consensus 1062 ~~~gnn~s~-s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~N-p~----------Ic~r--~~s-g~~Pt- 1125 (1363)
T KOG3628|consen 1062 SKRGNNTSS-SIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVN-PF----------ICLR--SYS-GPEPT- 1125 (1363)
T ss_pred hhhhccccc-ceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCC-hH----------hhhc--ccc-CCCCc-
Confidence 001222332 3344445566666766666655 21 11112221110 00 0111 111 12222
Q ss_pred CCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCC-CCccCCCcceEEEEecCCCCCccccccc
Q psy8076 461 DGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRND-GSECEPHELGRIVVKLPLPPGTMSTLYK 539 (737)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~-g~~~~~g~~GEL~i~g~~~~~~~~gy~~ 539 (737)
...+|....|+.+++.-+.+.++.+++.++|+..++++++|++++ -.+|.+|+.||||+.|. ..+.+|++
T Consensus 1126 ------~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S~---hnA~~~~~ 1196 (1363)
T KOG3628|consen 1126 ------TVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGELGEIWVNSA---HNASCSFT 1196 (1363)
T ss_pred ------ceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeCCccccccccCCcceEEeccc---cccccccc
Confidence 334666678888888888999999999999999999999999965 67999999999999998 88888876
Q ss_pred ChhhhHHhhcc--------CCCCeeecCceEEEec------C----ceEEEEeecCCeEeeCcEEechHHHHHHHhc-CC
Q psy8076 540 APQRFMKIYFT--------KFPGYYDTMDAGYYDE------N----GYIYVTARDDDVINVAGHRLSTSALEDVVLS-HP 600 (737)
Q Consensus 540 ~~~~~~~~~~~--------~~~g~~~TGDl~~~~~------d----G~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~-~p 600 (737)
..+.....-|. ...+|-||||+|++.. + .-||++|-.++.+.++|.+.+|.+||..+.+ ||
T Consensus 1197 ~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~ 1276 (1363)
T KOG3628|consen 1197 IGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHP 1276 (1363)
T ss_pred cCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcc
Confidence 53222222221 1345999999999942 2 2489999999999999999999999999988 99
Q ss_pred CcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHH
Q psy8076 601 DVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKE 680 (737)
Q Consensus 601 ~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (737)
.|.+|+|+-. +..+|+++++..+ +....+.--
T Consensus 1277 ~I~~cavF~~-----~glvVvviE~~gq-------------------------------------------~~~~~LvPl 1308 (1363)
T KOG3628|consen 1277 SIGGCAVFQA-----TGLVVVVIECHGQ-------------------------------------------QELADLVPL 1308 (1363)
T ss_pred cccceeeEee-----CCeEEEEEEecCc-------------------------------------------hhHhhhhHH
Confidence 9999999954 3468888888765 222334444
Q ss_pred HHHHHHHhcCCceeeeeEEEc--CCCCCCCCchhhHHHHHHHHcCCCCCchhhhhc
Q psy8076 681 LKELVREAIGPIAAFKLSTSV--TGLPRTRSGKTARKSIVDMARNKPLRVRLVYLQ 734 (737)
Q Consensus 681 l~~~l~~~l~~~~~p~~~~~v--~~lP~t~sGKi~R~~l~~~~~~~~~~~~~~~~~ 734 (737)
|.+.+-+.+ +.+-..+.+| ..+|+++.|-.+|..+++.+.++++...++|+.
T Consensus 1309 Iv~~vL~eH--~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~~~kL~~~~v~yi 1362 (1363)
T KOG3628|consen 1309 IVNVVLEEH--YIILDVVAFVDKGVFPRNSRGEKQRAHILDSWLAGKLDPIYVFYI 1362 (1363)
T ss_pred HHHHHHhhc--ceEEEEEEEecCCccccCCchhhHHHHHHHHHHhcccceeeeeec
Confidence 444443332 2333445555 469999999999999999999999998888764
|
|
| >KOG1178|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=335.12 Aligned_cols=519 Identities=15% Similarity=0.158 Sum_probs=343.2
Q ss_pred HHHHHhhhhhccCCCceEEEEeC--CCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHH
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDS--PVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVR 156 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~--~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~ 156 (737)
.+..+.+.+.+. |..++..+-. +..+.....||++.+..++.+++.|...|..+|+.|++++..+.++++..+++++
T Consensus 38 ~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~ 116 (1032)
T KOG1178|consen 38 LEDSFRRELAEA-PENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLA 116 (1032)
T ss_pred hhhHHHHHHhhc-ccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhh
Confidence 344566666666 7777655432 2345568999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCC----HHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccC
Q psy8076 157 LGAIHSVVFGGFA----ARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELT 232 (737)
Q Consensus 157 ~G~~~vpl~~~~~----~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~ 232 (737)
+|..+++++|.++ ++++..+.... .... .........+.......-... .. .
T Consensus 117 ~g~~~~~idp~~~~~e~~~~~~~ia~~~-----~s~~-----~~i~~~l~i~~~~~~~~~~~~------------sv--~ 172 (1032)
T KOG1178|consen 117 AGLTFLPIDPSWPNSELAGYLMRIAHFL-----TSVE-----LEIVRRLNIIDILLNSLFPKL------------SV--E 172 (1032)
T ss_pred cceEEEEecCCCcccccchHHHhhhhhh-----eecc-----ceehhhhhhHHHHhhcccccc------------ch--h
Confidence 9999999999999 33222211100 0000 000011111121111111000 00 0
Q ss_pred CCCcccHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCc
Q psy8076 233 PGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDD 312 (737)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d 312 (737)
. ..-.+.............-.-+|+.+++.||||+|| .||+|.-+|..+.....| +...+..+..+
T Consensus 173 ~-~~~~f~~~~~~~~~r~~~~~~~ds~~~l~~tSgs~G------------~pk~v~~~~~sl~~~fdw-~~~~f~~t~s~ 238 (1032)
T KOG1178|consen 173 T-IADSFQMVLHNEDTREIRVGGNDSTALLSFTSGSTG------------VPKGVAGTHFSLANAFDW-MFTTFPPTGSD 238 (1032)
T ss_pred h-ccchhhhhhccCCCcceeeecccccceEeecccccc------------cccccchhHHHHHhhhhh-ccccCCcCccc
Confidence 0 011122222222222223356778999999999999 999999999887766666 45558888888
Q ss_pred EEEEecccccccchhhh-hhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCC----c-
Q psy8076 313 VWWTASDMGWVVGHSYI-CYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDS----T- 386 (737)
Q Consensus 313 ~~l~~~~~~~~~g~~~~-~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~----~- 386 (737)
++-.....+++.. +.. +...|+.|+.+.. +.... ...+.++.+.+++++++.++.+|++.+.+....... .
T Consensus 239 ~~~~~~~~~~~d~-i~~~~~~~L~~~~~l~~-p~~~~-~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~ 315 (1032)
T KOG1178|consen 239 RFTFKTSVYFDDT-IQKFIGALLFNGNNLLV-PTATI-KDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEH 315 (1032)
T ss_pred hhhhhheeecccc-hHHHHhhHhhcCceeec-ccccC-ccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhh
Confidence 7644444433333 223 3445555554444 33222 344899999999999999999999988877654431 0
Q ss_pred ----cccCCCCCCccEEEeecCCCCHHHHHHHHHhcCC-cccccccccccccccccccccCCCCCCCCCCccCCCcCCCC
Q psy8076 387 ----LGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNV-TMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYD 461 (737)
Q Consensus 387 ----~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~-~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~ 461 (737)
.......+.||...++||+...++...+...+-. -...-|+.++..+..+...+...... +-...
T Consensus 316 ~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~l----------l~~~~ 385 (1032)
T KOG1178|consen 316 AFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSPSKVL----------LTNEN 385 (1032)
T ss_pred hhhcccccccchhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeHHhhCcccce----------eccee
Confidence 0011223589999999999999988855544422 22234888888876665544221111 11111
Q ss_pred CCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCC-CCcccccccC
Q psy8076 462 GKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLP-PGTMSTLYKA 540 (737)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~-~~~~~gy~~~ 540 (737)
++ .++.... -....+...+....|.+++.++.+.....+-.- ..+..| +..
T Consensus 386 -----v~---------------------~~p~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~ 437 (1032)
T KOG1178|consen 386 -----VY---------------------SVPKFDS-IIGSLTVLESLYRAGGEGEGGVGKGCLGAEQNLSSWVVDG-YST 437 (1032)
T ss_pred -----EE---------------------eccchhh-ccCCCcceeeeeccCcccCCcccceeecccccccceeecc-ccc
Confidence 11 0011111 001112222555666666666555544443210 012233 344
Q ss_pred hhhhHHhhccC---CCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCc
Q psy8076 541 PQRFMKIYFTK---FPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617 (737)
Q Consensus 541 ~~~~~~~~~~~---~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~ 617 (737)
++.+...+... .+.+|+|||+|+..++|.+.|.||.|++||++|+|++++||+.++..||.|.++.+....+...++
T Consensus 438 ~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~ 517 (1032)
T KOG1178|consen 438 PENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQ 517 (1032)
T ss_pred hhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCc
Confidence 44443333221 234899999999999999999999999999999999999999999999999999999999988899
Q ss_pred ceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeee
Q psy8076 618 IPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKL 697 (737)
Q Consensus 618 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 697 (737)
.+++|++.... . ...+...|++++.+.|+.||+|..
T Consensus 518 ~l~aFvv~~~~------------~--------------------------------~~~~~~~i~~~l~~~La~y~vPs~ 553 (1032)
T KOG1178|consen 518 TLLAFVVERGG------------S--------------------------------KSVLIRDIRNYLKKELASYMLPSL 553 (1032)
T ss_pred eEEEEEeccCC------------C--------------------------------CchhHHHHHHhhcccccceecceE
Confidence 99999999876 1 233478999999999999999999
Q ss_pred EEEcCCCCCCCCchhhHHHHHHHH
Q psy8076 698 STSVTGLPRTRSGKTARKSIVDMA 721 (737)
Q Consensus 698 ~~~v~~lP~t~sGKi~R~~l~~~~ 721 (737)
++.++++|+|++||+|+++|.+..
T Consensus 554 ~V~l~~vPl~~~GKvDkkaL~~~~ 577 (1032)
T KOG1178|consen 554 VVPLAKVPLNPNGKVDKKALLEYN 577 (1032)
T ss_pred EEEhhhCCcCCCCCcChhhhhhhh
Confidence 999999999999999999999943
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-28 Score=265.87 Aligned_cols=260 Identities=22% Similarity=0.258 Sum_probs=186.4
Q ss_pred ccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHh--hhhcCCCCcEEEEecccccccchhhhhh
Q psy8076 254 VEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMS--VIYNMGQDDVWWTASDMGWVVGHSYICY 331 (737)
Q Consensus 254 ~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~g~~~~~~ 331 (737)
.+.++++.+.||||||| .||+|.++|.++......... ...+++++|+++.+.++++..+.....+
T Consensus 83 ~~~~~i~~i~~TSGTTG------------~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~ 150 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSG------------TPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTL 150 (445)
T ss_pred CCHHHeEEEEeCCCCCC------------CcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHH
Confidence 45578899999999999 999999999876544332221 2248899999999999888776444345
Q ss_pred hccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHH
Q psy8076 332 GPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETK 411 (737)
Q Consensus 332 ~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~ 411 (737)
+++..|++++... .....+++|+++++|++.++|+.+..|.+...... ......+||.+++|||++++++.
T Consensus 151 ~~~~~Ga~vi~~~-------~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g--~~~~~~~lr~ii~gGE~l~~~~r 221 (445)
T TIGR03335 151 AAREVGMSIIPEG-------KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEG--IDPAESSIRRLVVGGESFADESR 221 (445)
T ss_pred HHHHcCCEEEcCC-------chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcC--CCcccCcceEEEEcCCCCCHHHH
Confidence 6677888765332 23457899999999999999998887765432211 11124689999999999999999
Q ss_pred HHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcC--CCCCCcceeeeeccccCcccccccccccccc
Q psy8076 412 NWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFP--GYDGKYVNIVMLNWLDGRAHCVRILPESLRK 489 (737)
Q Consensus 412 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (737)
+++.+.||+++++.||+||++... .+. ...|..++ .+. ++
T Consensus 222 ~~ie~~~g~~v~~~YG~TE~~~~~--~c~----------~~~g~h~~~d~~~-----vE--------------------- 263 (445)
T TIGR03335 222 NYVEELWGCEVYNTYGSTEGTMCG--ECQ----------AVAGLHVPEDLVH-----LD--------------------- 263 (445)
T ss_pred HHHHHHhCCcEEecCChhhhhheE--Eec----------CCCCccccCCceE-----EE---------------------
Confidence 999999999999999999986321 111 01122222 222 44
Q ss_pred CCCCCCCCcccccceEEEEcCC-CCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEec-C
Q psy8076 490 NVPKGQNATHFTSVEVRIIRND-GSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDE-N 567 (737)
Q Consensus 490 ~~~~~~~~~~~~~~~~~Ivd~~-g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~-d 567 (737)
|+|++ +.++|+|+.|||++++-. +...+.....+. |+|||++++.. +
T Consensus 264 -----------------IvDp~~~~~vp~Ge~GELvvT~L~---------~~~~r~~~PliR-----YrtgD~~~~~~~~ 312 (445)
T TIGR03335 264 -----------------VYDPRHQRFLPDGECGRIVLTTLL---------KPGERCGSLLIN-----YDTEDTTVVISRD 312 (445)
T ss_pred -----------------EEcCCCCCCCcCCCceEEEEEecC---------CCCccCCceEEE-----eecCceEEEecCC
Confidence 99976 567899999999999741 100000011122 99999999732 2
Q ss_pred ----c----eEEEEeecCCeEeeCcEEechHHHHHHHhcC---CCcc
Q psy8076 568 ----G----YIYVTARDDDVINVAGHRLSTSALEDVVLSH---PDVG 603 (737)
Q Consensus 568 ----G----~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~---p~V~ 603 (737)
| .+...||.||+++++|.+|+|.+||++|.++ +++.
T Consensus 313 ~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~ 359 (445)
T TIGR03335 313 RCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSLT 359 (445)
T ss_pred CCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCC
Confidence 2 2555799999999999999999999999995 5553
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-25 Score=218.84 Aligned_cols=221 Identities=16% Similarity=0.132 Sum_probs=163.3
Q ss_pred HhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEE
Q psy8076 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAA-IGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIH 161 (737)
Q Consensus 83 l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~ 161 (737)
|+.+++++ |+++|+++.++..++.+++||+||.++++++|+.|++ +|+++||+|+|+++|++++++++|||+++|+++
T Consensus 2 ~~~~~~~~-p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~ 80 (227)
T TIGR03089 2 LSPLLAAD-PASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEV 80 (227)
T ss_pred hhhhhhhC-CCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEE
Confidence 35566666 9999998753222234689999999999999999998 799999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccc-cc-cCCCCcccH
Q psy8076 162 SVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEE-AE-LTPGYDILW 239 (737)
Q Consensus 162 vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~-~~-~~~~~~~~~ 239 (737)
+|++ ++++++++++++...... ..+.++.+....... .. ........|
T Consensus 81 vp~n-------------~s~a~~~v~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (227)
T TIGR03089 81 VLAG-------------DPDADVVVTGPDRLAAAA-----------------GSGEVVALSLDPLGRRVAGELPPGVIDF 130 (227)
T ss_pred EeCC-------------CCCCCEEEeCcchhhhcc-----------------cCCceEEEeccccccCCCCCCCCcccch
Confidence 9995 789999999876433210 112333332100000 00 001122455
Q ss_pred HHHHhhcCC-CCCc-cccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEe
Q psy8076 240 DDALAQRLS-HRCV-PVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317 (737)
Q Consensus 240 ~~~~~~~~~-~~~~-~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~ 317 (737)
.+....... .... ...++|++.++||||+|- ++++.+. ...+++++|+++ .
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~D~a~l~yTsg~~~---------------------~~~~~~~-----~~~~l~~~D~~l-~ 183 (227)
T TIGR03089 131 APEVRVHGDQFAPYEPPDATAPALVAGGGEWTG---------------------AELVAAA-----RAAGLPPGDRVL-V 183 (227)
T ss_pred hhhhhccCCCCCCCCCCCCCcceeeeccccccH---------------------HHHHHHH-----hhcCCCCCCeEE-e
Confidence 555543222 2222 456799999999997754 2444433 447789999999 9
Q ss_pred cccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCc
Q psy8076 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVN 366 (737)
Q Consensus 318 ~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt 366 (737)
+|++|..|+...++.+|..|+++++++ ++++.++++.|+++|||
T Consensus 184 ~Pl~H~~gl~~~~~~~l~~G~t~v~~~-----rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 184 LAWTDLEDFLATLLAPLAAGGSLVLVT-----HPDPARLDQIAETERVT 227 (227)
T ss_pred cCCCchHHHHHHHHHHhccCceEEEec-----CCCHHHHHHHHHhhcCC
Confidence 999999998788999999999999985 48999999999999997
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-22 Score=207.97 Aligned_cols=283 Identities=18% Similarity=0.163 Sum_probs=203.9
Q ss_pred ccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHH--HhhhhcCCCCcEEEEecccccccchhhhhh
Q psy8076 254 VEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWT--MSVIYNMGQDDVWWTASDMGWVVGHSYICY 331 (737)
Q Consensus 254 ~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~--~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~ 331 (737)
.+-++...|--|||||| +|+-+..++.......... .-...+...+|++..+..++...|....-+
T Consensus 87 ~~~~~i~~ihaSSGTTG------------kPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ 154 (438)
T COG1541 87 VPKEEIVRIHASSGTTG------------KPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHY 154 (438)
T ss_pred ccccceEEEEccCCCCC------------CceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHH
Confidence 44455666777999999 9999999987644333322 222357788999888777665555433334
Q ss_pred hccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHH
Q psy8076 332 GPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETK 411 (737)
Q Consensus 332 ~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~ 411 (737)
++-..|++++=.. .-+.++.+++++.+++|++.++|+.+..|++...... ....-.+||.+++|+|++++++.
T Consensus 155 ga~rig~~vip~~-----~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G--~~~~~~~lk~~i~gaE~~see~R 227 (438)
T COG1541 155 GAERIGATVIPIS-----GGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEG--IDPDKLSLKKGIFGAEPWSEEMR 227 (438)
T ss_pred HHHhhCEEEEccC-----CccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcC--CChhhcceeEEEEecccCCHHHH
Confidence 5555665554332 2467889999999999999999999999988765431 12334689999999999999999
Q ss_pred HHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcC--CCCCCcceeeeeccccCcccccccccccccc
Q psy8076 412 NWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFP--GYDGKYVNIVMLNWLDGRAHCVRILPESLRK 489 (737)
Q Consensus 412 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (737)
+.+.+.||+..++.||.||..+....-|. . .. |..++ ... +.
T Consensus 228 ~~ie~~~g~~~~diYGltE~~g~g~~eC~---~------~~-glhi~eD~~~-----~E--------------------- 271 (438)
T COG1541 228 KVIENRFGCKAFDIYGLTEGFGPGAGECT---E------RN-GLHIWEDHFI-----FE--------------------- 271 (438)
T ss_pred HHHHHHhCCceeeccccccccCCcccccc---c------cc-CCCcchhhce-----ee---------------------
Confidence 99999999999999999999766322121 0 01 22221 122 33
Q ss_pred CCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecC-
Q psy8076 490 NVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDEN- 567 (737)
Q Consensus 490 ~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~d- 567 (737)
|+| .+|..+++|+.|||+++.- .+ ....+.. |+|||+..+..+
T Consensus 272 -----------------i~dP~t~e~l~dge~GelV~T~L-----~~--------~~~PlIR-----YrtgDit~i~~~~ 316 (438)
T COG1541 272 -----------------IVDPETGEQLPDGERGELVITTL-----TK--------EGMPLIR-----YRTGDITVILSDP 316 (438)
T ss_pred -----------------eecCCcCccCCCCCeeEEEEEec-----cc--------cCcceEE-----EEcCCeeEecccC
Confidence 999 5699999999999999963 11 1111122 999999999763
Q ss_pred ---ce-----EEEEeecCCeEeeCcEEechHHHHHHHhcCCCcc-eeEEecccCCCCCcceEEEEEeec
Q psy8076 568 ---GY-----IYVTARDDDVINVAGHRLSTSALEDVVLSHPDVG-DTAVIGVPEPTKGEIPFCLYIKKR 627 (737)
Q Consensus 568 ---G~-----l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~-~a~vv~~~~~~~~~~~~a~v~~~~ 627 (737)
|+ ..|.||.||+++++|.+|+|..||++|.+.+.+. +-.++... +...+.+.+-|++.+
T Consensus 317 C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~-~~~~d~L~V~vE~~~ 384 (438)
T COG1541 317 CGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTR-NGGLDELTVRVELEN 384 (438)
T ss_pred CCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEec-CCCCceEEEEEEecC
Confidence 32 5789999999999999999999999999999998 44444444 444556778887765
|
|
| >KOG3628|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=216.46 Aligned_cols=551 Identities=15% Similarity=0.112 Sum_probs=352.3
Q ss_pred HHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHH-HHHHcCCCCCCEEEEEecCC--HHHHHHHHHHHH
Q psy8076 80 YNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAG-SLAAIGVSAGDRVLIYMPLI--PEAIVSMLATVR 156 (737)
Q Consensus 80 ~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~-~L~~~Gv~~Gd~V~i~~~~~--~e~vva~lA~~~ 156 (737)
..++++.-..+ +..+|.++-+. .+....+||..+..++.++|+ .|-+-|+.++|+|.++...+ +|++++.++|..
T Consensus 97 ~avl~~~~nhs-~~~ta~i~id~-kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l 174 (1363)
T KOG3628|consen 97 IAVLRYRRNHS-ATSTAHICIDK-KGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFL 174 (1363)
T ss_pred HHHHHhhccCC-CCCceEEEEcC-CCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccc
Confidence 33444444444 88999998874 455899999999999999999 66777999999999998766 799999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCc
Q psy8076 157 LGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYD 236 (737)
Q Consensus 157 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~ 236 (737)
.|.+.+|+++.++.+++..+++....+++++..+..+....-........+++. -...+
T Consensus 175 ~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v~~---------------------w~t~~ 233 (1363)
T KOG3628|consen 175 LGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAVAW---------------------WKTND 233 (1363)
T ss_pred cceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHHHh---------------------hhccc
Confidence 999999999999999999999999999999987653321110000000000000 00000
Q ss_pred ccHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHH-----------HH---
Q psy8076 237 ILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAW-----------TM--- 302 (737)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~-----------~~--- 302 (737)
+.- ....+. ...+..... ..||-||++++| .--|++.+|+ ++.+... .+
T Consensus 234 ~k~-~~~~~k--~~~P~~~~~-~~~i~~t~s~l~------------~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~ 296 (1363)
T KOG3628|consen 234 FKG-NYTKDK--IKKPRMQLP-YGYIEFTRSPLG------------NLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAF 296 (1363)
T ss_pred ccc-eeehhh--ccCCceeee-eEEEEEeccchh------------ceeeeEeecc-cccchhhhhhccCcChHHHHHhh
Confidence 000 000000 111122223 799999999999 8899999995 4433211 11
Q ss_pred -----hhhhcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHH
Q psy8076 303 -----SVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRV 377 (737)
Q Consensus 303 -----~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~ 377 (737)
...+.....++++....+..-.|++.+++.+|++|.|.+.++.... ..|..+.+++.+++.+++..--..++.
T Consensus 297 ~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l--~~pG~~~~l~~k~R~~~~ltd~~~Lkq 374 (1363)
T KOG3628|consen 297 YGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVL--KPPGLIANLITKYRATWSLTDYAGLKQ 374 (1363)
T ss_pred hcchhhhccccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhc--CCCcchhhhhccceeEEEeecccccCc
Confidence 1223445667888888888888888889999999999999987543 678889999999999999887666655
Q ss_pred HHHcCC-CCc------cccCCCCCCccEEEeecCCCCHHHHH----HHHHhcCCc-ccccccccccc----ccccccccc
Q psy8076 378 IRREDK-DST------LGAQYSTDSLRYLFVAGEHCDHETKN----WAEKSFNVT-MLNHWWQTETG----HSITAHCLG 441 (737)
Q Consensus 378 l~~~~~-~~~------~~~~~~l~~Lr~i~~gGe~l~~~~~~----~~~~~~~~~-i~~~YG~TE~~----~~~~~~~~~ 441 (737)
...... +.+ .....++++||.+++..+.++.+... +|.+-.|.. .-..|-+-+++ +..+.....
T Consensus 375 ~~~ny~~~p~a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~ 454 (1363)
T KOG3628|consen 375 PVYNYQEDPKATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDW 454 (1363)
T ss_pred ccccccCCcccccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccc
Confidence 433211 111 11236789999999999999998544 344333432 12223333332 222221100
Q ss_pred C---CCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCccccc-ceEEEEcC-CCCccC
Q psy8076 442 Y---QHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTS-VEVRIIRN-DGSECE 516 (737)
Q Consensus 442 ~---~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ivd~-~g~~~~ 516 (737)
. .....+| ...+...+|-- .+..-+...+-++++.+.........+.+...++ +.+.|+++ ..+.|.
T Consensus 455 ~~~~~~~~r~p-~~~~~~~~~e~-------ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~ 526 (1363)
T KOG3628|consen 455 MEIGTVSIRRP-EQMADTLPGEG-------LLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCK 526 (1363)
T ss_pred hhhhcccccCc-ccccccCccce-------eeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccc
Confidence 0 0111111 11111111111 1223344555667777777777788888877554 45567775 478899
Q ss_pred CCcceEEEEecCCCCCcccccccChhhhHHhhcc-------CCC---CeeecCceEEEecCceEEEEeec-CCeEeeCcE
Q psy8076 517 PHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFT-------KFP---GYYDTMDAGYYDENGYIYVTARD-DDVINVAGH 585 (737)
Q Consensus 517 ~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~-------~~~---g~~~TGDl~~~~~dG~l~i~GR~-dd~Ik~~G~ 585 (737)
.+++|||||.++ +...+||.-+..+...|-. ..+ -|.|||=+|++.+ |.++|+|-. |......|.
T Consensus 527 ~~eVGEIwVsS~---~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~~-gki~vl~~k~d~llq~~~~ 602 (1363)
T KOG3628|consen 527 TDEVGEIWVSSN---SLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVHN-GKIYVLGLKEDGLLQVSGW 602 (1363)
T ss_pred cCcceeEEEecC---CcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeeeC-CeEEEEEechhhhhhhhhh
Confidence 999999999999 8999999766544333321 112 2899999999965 555555554 444566788
Q ss_pred EechHHH----------HHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCcc
Q psy8076 586 RLSTSAL----------EDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPI 655 (737)
Q Consensus 586 rv~~~eI----------E~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (737)
+++..+| +.+.+..+.|-++.|+- .|..+++++-++.. .
T Consensus 603 ~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~------~E~~~Vv~~esP~a------------~------------- 651 (1363)
T KOG3628|consen 603 RHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE------DEHIVVVVLESPDA------------T------------- 651 (1363)
T ss_pred hhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee------cceEEEEEEeCcch------------h-------------
Confidence 8776554 44555566777877774 34455555555441 1
Q ss_pred ccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHHHcCCCCCchh
Q psy8076 656 RVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKPLRVRL 730 (737)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~~~~~~~~ 730 (737)
+.+.-+...++.+.+..-+---..-..++..+.||||+-|-|.-..+++.|..+.+....
T Consensus 652 ---------------e~~~~q~~~~v~q~l~~iHqv~vyCilivP~~tLPrt~~~Gi~~~~~k~~F~~G~L~~~~ 711 (1363)
T KOG3628|consen 652 ---------------EENSFQWMSRVFQALDSIHQVGVYCILIVPANTLPRTPLGGIHNNECKQAFLEGSLPPSY 711 (1363)
T ss_pred ---------------hhhhhhHHHHHHHHHHHHhcccceEEEEeccccCCCccccccccHHHHHHHHcCCCCcce
Confidence 122223444555555542221122225666789999998889999999999999887654
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.5e-21 Score=200.44 Aligned_cols=118 Identities=19% Similarity=0.206 Sum_probs=108.3
Q ss_pred CCeeecCceEEE-ecCceEEEEeecCCeEeeCc---EEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecC
Q psy8076 553 PGYYDTMDAGYY-DENGYIYVTARDDDVINVAG---HRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRI 628 (737)
Q Consensus 553 ~g~~~TGDl~~~-~~dG~l~i~GR~dd~Ik~~G---~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~ 628 (737)
+|||+|||+|++ |+||+|+|.||.| +| ++|+|. ||++|.+||+|.+|+|++++++..|+.++|||++...
T Consensus 208 dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~~ 281 (365)
T PRK09188 208 RIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAELP 281 (365)
T ss_pred CcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCC
Confidence 789999999998 6999999999998 88 799999 9999999999999999999999999999999987642
Q ss_pred CCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCC
Q psy8076 629 PLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTR 708 (737)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~ 708 (737)
. ..++|+++++++|+. ++|+.++++++||+|+
T Consensus 282 ------------~-----------------------------------~~~el~~~l~~~L~~-kvP~~v~~v~~lP~t~ 313 (365)
T PRK09188 282 ------------A-----------------------------------DEKSLRARLAGAKPP-KPPEHIQPVAALPRDA 313 (365)
T ss_pred ------------C-----------------------------------CHHHHHHHHHhhchh-cCCcEEEEECCCCCCC
Confidence 1 246899999999999 9999999999999999
Q ss_pred CchhhHHHHHHHHcCC
Q psy8076 709 SGKTARKSIVDMARNK 724 (737)
Q Consensus 709 sGKi~R~~l~~~~~~~ 724 (737)
+||++|+.|++++.+.
T Consensus 314 ~GKi~R~~Lr~~~~~~ 329 (365)
T PRK09188 314 DGTVRDDILRLIAMNQ 329 (365)
T ss_pred CCCccHHHHHHHhhcc
Confidence 9999999999987543
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-14 Score=155.81 Aligned_cols=247 Identities=13% Similarity=0.160 Sum_probs=155.1
Q ss_pred CeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhh--hcCCCCcEEEEecccccccchhhhhhhcccc
Q psy8076 259 PLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVI--YNMGQDDVWWTASDMGWVVGHSYICYGPLAA 336 (737)
Q Consensus 259 ~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~ 336 (737)
-..+..|||||| .|-.+..+........+..+... .++..++++..+. +..+. ++..+..
T Consensus 101 ~~~v~~TSGSSG------------~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~---~~~~~---ly~~~~~ 162 (430)
T TIGR02304 101 NISVGLSSGTSG------------RRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFL---RADNN---LYQSVNN 162 (430)
T ss_pred cEEEEECCCCCC------------CceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEE---ccChh---HHHHHHh
Confidence 456777999999 99999988865433322212211 2445555554442 11111 1222222
Q ss_pred CcE-EEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHH
Q psy8076 337 GIT-SVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAE 415 (737)
Q Consensus 337 G~~-~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~ 415 (737)
... +-.++ . ..+.+.+++.|++++++++.+.|+.+..|++..... ..+ .++|.++++||.++++..+.++
T Consensus 163 ~~~~~~~~~---l-~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~----~l~-~~~k~ii~~~E~l~~~~r~~Ie 233 (430)
T TIGR02304 163 RWISLDFFD---L-LAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEG----ELT-IKPKKVISVAEVLEPQDRELIR 233 (430)
T ss_pred ccceeeecC---C-CcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhc----CCC-CCceEEEEccCCCCHHHHHHHH
Confidence 111 22222 2 256889999999999999999999999998865431 222 3799999999999999999999
Q ss_pred HhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCC
Q psy8076 416 KSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQ 495 (737)
Q Consensus 416 ~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (737)
+.||+++++.||+|| |. +.+.|. -|.-..+.+ .
T Consensus 234 ~~fg~~V~~~YG~tE-g~-la~eC~------------~g~lHl~ed-----~---------------------------- 266 (430)
T TIGR02304 234 NVFKNTVHQIYQATE-GF-LASTCR------------CGTLHLNED-----L---------------------------- 266 (430)
T ss_pred HHhCCCeeEccCCch-hh-eEEecC------------CCCEEEccc-----c----------------------------
Confidence 999999999999999 43 222221 011111111 0
Q ss_pred CCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecC----ce--
Q psy8076 496 NATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDEN----GY-- 569 (737)
Q Consensus 496 ~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~d----G~-- 569 (737)
.-+|..++|+++++ +.+|++- .|.. ..++. |+|||++++..+ |.
T Consensus 267 -----~~vE~~ivD~~~~~-------~~ViT~L---------~n~~----~PlIR-----YrtGD~~~~~~~~C~CGr~~ 316 (430)
T TIGR02304 267 -----VHIEKQYLDEHKRF-------VPIITDF---------TRTT----QPIVR-----YRLNDILVESEQPCSCGSAT 316 (430)
T ss_pred -----EEEEeeEECCCCce-------EEEEecC---------CCcc----ceEEe-----eeCCCEEEeCCCCCCCCCcc
Confidence 01222378877643 3466642 2211 11222 999999988543 32
Q ss_pred --E-EEEeecCCeEee---Cc--EEechHHHHHHHh-cCCCcceeEEec
Q psy8076 570 --I-YVTARDDDVINV---AG--HRLSTSALEDVVL-SHPDVGDTAVIG 609 (737)
Q Consensus 570 --l-~i~GR~dd~Ik~---~G--~rv~~~eIE~~l~-~~p~V~~a~vv~ 609 (737)
| .|.||.||++++ +| ..|.|..|+.++. ..++|.+.-++-
T Consensus 317 ~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q 365 (430)
T TIGR02304 317 MAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQ 365 (430)
T ss_pred cccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEE
Confidence 4 488999999986 24 4558999998855 478898877763
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-12 Score=103.65 Aligned_cols=70 Identities=31% Similarity=0.509 Sum_probs=62.1
Q ss_pred HHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCccccc
Q psy8076 591 ALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYC 670 (737)
Q Consensus 591 eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (737)
|||++|.+||+|.+|+|++.+++..|+.++||+++ .
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~--~------------------------------------------ 36 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL--D------------------------------------------ 36 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE--H------------------------------------------
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe--e------------------------------------------
Confidence 89999999999999999999999899999999988 3
Q ss_pred CCChHHHHHHHHHHHHHhcCCceee--eeEEEcCC-CCCCCCch
Q psy8076 671 TRSDEEIGKELKELVREAIGPIAAF--KLSTSVTG-LPRTRSGK 711 (737)
Q Consensus 671 ~~~~~~~~~~l~~~l~~~l~~~~~p--~~~~~v~~-lP~t~sGK 711 (737)
.++|+++++++|++|++| ..++.+++ ||+|+|||
T Consensus 37 -------~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t~~GK 73 (73)
T PF13193_consen 37 -------EEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRTPSGK 73 (73)
T ss_dssp -------HHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBETTSS
T ss_pred -------ecccccchhhhCCCcceeeEEEEccccCcCCCCCCCC
Confidence 378999999999999999 66776777 99999998
|
... |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.5e-06 Score=90.83 Aligned_cols=232 Identities=19% Similarity=0.141 Sum_probs=129.4
Q ss_pred ccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHH---HHHHhhhhcCCCCc-EEEEecccccccch---
Q psy8076 254 VEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATL---AWTMSVIYNMGQDD-VWWTASDMGWVVGH--- 326 (737)
Q Consensus 254 ~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~---~~~~~~~~~~~~~d-~~l~~~~~~~~~g~--- 326 (737)
.+.+++..++-|||||| .|--+.+.+....... ...+....+..... .++...|-......
T Consensus 86 ~~~e~~~~~~tSSGTtG------------~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~ 153 (365)
T PF04443_consen 86 VPEEEVEKVFTSSGTTG------------QPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSA 153 (365)
T ss_pred cChhhheeEEECCCCCC------------CCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHH
Confidence 34456777888899999 7754555443322222 22233222332222 23333332211110
Q ss_pred -hhhhhhccccCcEEEEecCCCCCCCChhHHHHHHH----hcCCcEEeecHHHHHHHHHcCCCCccccCCCCC-CccEEE
Q psy8076 327 -SYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIH----NHKVNGLFTAPTALRVIRREDKDSTLGAQYSTD-SLRYLF 400 (737)
Q Consensus 327 -~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~----~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~-~Lr~i~ 400 (737)
.......+..+.. .+.... ..+.+.++..+. +.++..++..|.++-.+.....+.. ....|+ ..+.+-
T Consensus 154 ~~~~~~~~~~~~~~-~~l~~~---~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~--~~~~L~~~s~vi~ 227 (365)
T PF04443_consen 154 RYAGILGELFFGSR-FALDND---ELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERG--IRFRLPKGSIVIH 227 (365)
T ss_pred HHHHHHhhcccCce-eeecCC---ccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcC--CcccCCCCCEEEe
Confidence 1123334445555 333322 246666666554 4567778888887766655433221 223343 455555
Q ss_pred eec------CCCCH-HHHHHHHHhcCC----cccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeee
Q psy8076 401 VAG------EHCDH-ETKNWAEKSFNV----TMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVM 469 (737)
Q Consensus 401 ~gG------e~l~~-~~~~~~~~~~~~----~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~ 469 (737)
.|| +.++. +..+.+.+.||+ .+++.|||||.......... .... .|.. +.
T Consensus 228 ~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~--~~~~--------~p~w--------V~- 288 (365)
T PF04443_consen 228 GGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGH--GHFH--------VPPW--------VI- 288 (365)
T ss_pred CCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCC--Cccc--------CCCe--------EE-
Confidence 554 34665 456677787887 78899999998744333211 0110 0111 22
Q ss_pred eccccCccccccccccccccCCCCCCCCcccccceEEEEcC-CCCccCCCcceEEEEecCCCCCcccccccChhhhHHhh
Q psy8076 470 LNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRN-DGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIY 548 (737)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~-~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~ 548 (737)
|.|+ +.++++.|+.|-|.+-.+.+
T Consensus 289 -------------------------------------iRDp~tl~~~~~Ge~Gli~vidl~~------------------ 313 (365)
T PF04443_consen 289 -------------------------------------IRDPETLEPLPPGETGLIQVIDLAN------------------ 313 (365)
T ss_pred -------------------------------------EECCCCCcCCCCCCeeEEEEEcccc------------------
Confidence 7784 57899999999999998732
Q ss_pred ccCCCCeeecCceEEEecC--------ceEEEEeecCC
Q psy8076 549 FTKFPGYYDTMDAGYYDEN--------GYIYVTARDDD 578 (737)
Q Consensus 549 ~~~~~g~~~TGDl~~~~~d--------G~l~i~GR~dd 578 (737)
...++..-|.|+|.+..+ .++.++||.+.
T Consensus 314 -~s~p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~ 350 (365)
T PF04443_consen 314 -TSYPGFILTEDLGVLHGDDDCGCRKGKYFEVLGRADG 350 (365)
T ss_pred -cCCCcEEEEcceeeecCCCCCCCccCCEEEEEeCCCC
Confidence 112566779999988654 27999999764
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.1e-06 Score=92.98 Aligned_cols=93 Identities=22% Similarity=0.225 Sum_probs=60.3
Q ss_pred ccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEec--Cc--eEEEEeecCCeEeeCcEEech
Q psy8076 514 ECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDE--NG--YIYVTARDDDVINVAGHRLST 589 (737)
Q Consensus 514 ~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~--dG--~l~i~GR~dd~Ik~~G~rv~~ 589 (737)
.+..|+.-||+|+.. .|+|. |+.||++++.. ++ .+.|+||.+.++.+.|++++-
T Consensus 351 ele~G~~YelviTt~------~GLyR----------------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e 408 (528)
T PF03321_consen 351 ELEVGEEYELVITTN------SGLYR----------------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSE 408 (528)
T ss_dssp G--TT-EEEEEEEST------TS-SS----------------EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEH
T ss_pred HhcCCCeEEEEEecc------cceee----------------eecCCEEEEeeccCCCcEEEEeccCCceeecceeecCH
Confidence 345688889999864 22222 99999999953 34 799999999999999999999
Q ss_pred HHHHHHHhcC-----CCcceeEEecccCCCCCcceEEEEEeecC
Q psy8076 590 SALEDVVLSH-----PDVGDTAVIGVPEPTKGEIPFCLYIKKRI 628 (737)
Q Consensus 590 ~eIE~~l~~~-----p~V~~a~vv~~~~~~~~~~~~a~v~~~~~ 628 (737)
.+|++++.+. -.+.+.++...........-+.++++...
T Consensus 409 ~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~ 452 (528)
T PF03321_consen 409 EQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE 452 (528)
T ss_dssp HHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS-
T ss_pred HHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCCC
Confidence 9999998884 23566666655322223345566666543
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00033 Score=59.64 Aligned_cols=91 Identities=21% Similarity=0.177 Sum_probs=57.9
Q ss_pred cEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCC
Q psy8076 584 GHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYG 663 (737)
Q Consensus 584 G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (737)
|.+|+|..||++|.++|++.....+.+......+.+.+.|+..++.... .
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~--------~---------------------- 50 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFSDD--------A---------------------- 50 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCTT--------H----------------------
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcc--------h----------------------
Confidence 7899999999999999999844444454444566788888888761000 0
Q ss_pred CCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhH
Q psy8076 664 PISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTAR 714 (737)
Q Consensus 664 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R 714 (737)
.....+.++|.+.+++.++--. -..++...+||+| .||..|
T Consensus 51 --------~~~~~l~~~i~~~lk~~lgv~~-~V~lv~~gtLpr~-~~K~~R 91 (96)
T PF14535_consen 51 --------EDLEALAERIAERLKERLGVRP-EVELVPPGTLPRS-EGKAKR 91 (96)
T ss_dssp --------HHHHHHHHHHHHHHHHHHSS-E-EEEEE-TT-S----SSSS-S
T ss_pred --------HHHHHHHHHHHHHHHhhcCceE-EEEEECCCCccCC-CCcceE
Confidence 1235778889999999888432 3345556789998 678654
|
|
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0089 Score=67.91 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=50.3
Q ss_pred cCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEec----CceEEEEeecCCeEeeCcEEechH
Q psy8076 515 CEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDE----NGYIYVTARDDDVINVAGHRLSTS 590 (737)
Q Consensus 515 ~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~----dG~l~i~GR~dd~Ik~~G~rv~~~ 590 (737)
|..|+.=||+|+.. .|.|. |+.||.+++.. --.|.|+||.+.++.+.|+++.-.
T Consensus 391 Ve~G~~Y~lVvTT~------~GLyR----------------Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~ 448 (597)
T PLN02249 391 VEVGKEYELVITTY------AGLYR----------------YRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEA 448 (597)
T ss_pred cCCCCeEEEEEEcc------cceeE----------------eecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHH
Confidence 45677789999853 23332 89999999953 347999999999999999999999
Q ss_pred HHHHHHhc
Q psy8076 591 ALEDVVLS 598 (737)
Q Consensus 591 eIE~~l~~ 598 (737)
+++.++.+
T Consensus 449 ~v~~Av~~ 456 (597)
T PLN02249 449 DLQKAVEN 456 (597)
T ss_pred HHHHHHHH
Confidence 99998877
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.023 Score=64.13 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=50.9
Q ss_pred ccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEe----cCceEEEEeecCCeEeeCcEEech
Q psy8076 514 ECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYD----ENGYIYVTARDDDVINVAGHRLST 589 (737)
Q Consensus 514 ~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~----~dG~l~i~GR~dd~Ik~~G~rv~~ 589 (737)
.+..|+.=||+|+.- .|+|. ||.||+.++. ..-.+.|++|.+.+..+.|++.+-
T Consensus 397 evk~G~~YelVvTt~------~GLYR----------------YrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE 454 (606)
T PLN02247 397 DVKVGHYYELVVTTF------TGLYR----------------YRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNE 454 (606)
T ss_pred HccCCCeEEEEEEec------CceEE----------------EecCCEEEEeeecCCCceEEEEecCCceeecccccCCH
Confidence 355688889999853 22222 8999999884 456799999999999999999999
Q ss_pred HHHHHHHhcC
Q psy8076 590 SALEDVVLSH 599 (737)
Q Consensus 590 ~eIE~~l~~~ 599 (737)
.++..++.+.
T Consensus 455 ~~l~~Av~~a 464 (606)
T PLN02247 455 EDLLKAVTQA 464 (606)
T ss_pred HHHHHHHHHH
Confidence 9998887773
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.033 Score=62.76 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=49.9
Q ss_pred cCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEe----cCceEEEEeecCCeEeeCcEEechH
Q psy8076 515 CEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYD----ENGYIYVTARDDDVINVAGHRLSTS 590 (737)
Q Consensus 515 ~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~----~dG~l~i~GR~dd~Ik~~G~rv~~~ 590 (737)
+..|..=||+|+.- .|+|. ||.||+.++. ..-.+.|++|.+-+..+.|++.+-.
T Consensus 404 v~~G~~YelvvTt~------~GLyR----------------YrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~ 461 (612)
T PLN02620 404 VKLGQEYELVVTTY------AGLYR----------------YRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEV 461 (612)
T ss_pred ccCCCeEEEEEEec------CceEE----------------EecCCEEEEeeecCCCceEEEEeecCceeecccccCCHH
Confidence 45678889999853 22222 8999999884 3467999999999999999999999
Q ss_pred HHHHHHhcC
Q psy8076 591 ALEDVVLSH 599 (737)
Q Consensus 591 eIE~~l~~~ 599 (737)
++..++.+.
T Consensus 462 ~l~~Av~~a 470 (612)
T PLN02620 462 ELQNAVKNA 470 (612)
T ss_pred HHHHHHHHH
Confidence 988777663
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.48 Score=51.30 Aligned_cols=84 Identities=25% Similarity=0.247 Sum_probs=71.2
Q ss_pred eeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCH--HHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcE
Q psy8076 107 IRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIP--EAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKV 184 (737)
Q Consensus 107 ~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~--e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 184 (737)
.--+|+.++...+..+|+.|...|..+||+|.+...-+. .-+...+|+.++|+.++|+.+. ..++-..++++.++.+
T Consensus 107 ~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tv 185 (438)
T COG1541 107 VFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTV 185 (438)
T ss_pred eeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcE
Confidence 347899999999999999999999999999988876221 1167889999999999999883 4577788999999999
Q ss_pred EEEcCCc
Q psy8076 185 IIAASCG 191 (737)
Q Consensus 185 vl~~~~~ 191 (737)
|.+..++
T Consensus 186 I~~tps~ 192 (438)
T COG1541 186 IAATPSY 192 (438)
T ss_pred EEEChHH
Confidence 9998763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 737 | ||||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 4e-92 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 1e-91 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 2e-91 | ||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 5e-91 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 5e-91 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 7e-91 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 1e-90 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 1e-83 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 1e-25 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 1e-25 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 9e-23 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 7e-14 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 5e-13 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 5e-13 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 4e-12 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 9e-12 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 1e-11 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 1e-11 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 1e-10 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 2e-09 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 8e-09 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 8e-09 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 2e-08 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 2e-08 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 3e-08 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 3e-08 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 3e-08 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 9e-08 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 2e-07 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 2e-07 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 1e-06 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 2e-06 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 7e-06 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 1e-05 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 1e-05 | ||
| 1t5h_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE | 2e-05 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 2e-05 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 2e-05 | ||
| 3dlp_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, | 2e-05 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 3e-05 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 3e-05 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 7e-05 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 3e-04 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 7e-05 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 8e-05 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 3e-04 | ||
| 4gr4_A | 469 | Crystal Structure Of Slgn1deltaasub Length = 469 | 1e-04 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 3e-04 |
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 534 bits (1379), Expect = 0.0
Identities = 207/709 (29%), Positives = 333/709 (46%), Gaps = 116/709 (16%)
Query: 25 NDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQP---FTKWFVGGEINACYN 81
++Y Y++SI P++FW + G + W + ++ + S P KW+ G +N N
Sbjct: 21 PEQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAAN 80
Query: 82 AIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYM 141
+DRH++ + A+I + T + ++Y EL V A +L +G+ GD V IYM
Sbjct: 81 CLDRHLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYM 139
Query: 142 PLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYK 201
P++PEA V+MLA R+GA+HSV+FGGF+ + + + +++I A GV + + K
Sbjct: 140 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLK 199
Query: 202 TILNEALEISSCKP-DYCIIFQRRCVEEAELTPGYDILWDDALA-QRLSHRCVPVEANDP 259
+++AL+ + ++ I+ +R + + G D+ W D + H+ + A DP
Sbjct: 200 KNVDDALKNPNVTSVEHVIVL-KRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDP 258
Query: 260 LYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASD 319
L+ILYTSG+TGK PKG+L GG++ A T +++ D++W +D
Sbjct: 259 LFILYTSGSTGK------------PKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTAD 306
Query: 320 MGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIR 379
+GWV GHSY+ YGPLA G T++M+EG P+ P P++ +V+ H+VN L+TAPTA+R +
Sbjct: 307 VGWVTGHSYLLYGPLACGATTLMFEGVPN-WPTPARMCQVVDKHQVNILYTAPTAIRALM 365
Query: 380 REDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF---NVTMLNHWWQTETG-HSI 435
E + SLR L GE + E W K +++ WWQTETG I
Sbjct: 366 AEGDKAI--EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMI 423
Query: 436 TAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQ 495
T L + S PF G
Sbjct: 424 TP--LPGAIELKAG--SATRPFFG------------------------------------ 443
Query: 496 NATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGY 555
V+ ++ N+G E G +V+ PG TL+ +RF + YF+ F
Sbjct: 444 -------VQPALVDNEGHPQEGATEGNLVITDSW-PGQARTLFGDHERFEQTYFSTFKNM 495
Query: 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTK 615
Y + D DE+GY ++T R DDV+NV+GHRL T+ +E +++HP + + AV+G+P K
Sbjct: 496 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 555
Query: 616 GEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDE 675
G+ + + V + S
Sbjct: 556 GQ-------------------AIYAY---------------VTLNHGEEPS--------P 573
Query: 676 EIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNK 724
E+ E++ VR+ IGP+A + LP+TRSGK R+ + +A
Sbjct: 574 ELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD 622
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 519 bits (1338), Expect = e-176
Identities = 211/701 (30%), Positives = 321/701 (45%), Gaps = 114/701 (16%)
Query: 26 DKYYDAYRKSIEAPESFWTDVGN-MATWSKKWDRILDNSDQ------PFTKWFVGGEINA 78
Y +++SIE P F+ WSK +D++ + WF+ G++NA
Sbjct: 24 QDYQRLHKESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNA 83
Query: 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSL-AAIGVSAGDRV 137
CYN +DRH + K A+I + +TY EL E+V +A L ++GV GD V
Sbjct: 84 CYNCVDRHALKT-PNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTV 142
Query: 138 LIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKV 197
+YMP++PEAI+++LA R+GAIHSVVF GF++ L R+ KV+I KV
Sbjct: 143 AVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKV 202
Query: 198 VRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALA-QRLSHRCVPVEA 256
+ K I+++AL + + +++++ D+ W + + C PV++
Sbjct: 203 IETKRIVDDALRETPGV-RHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDS 261
Query: 257 NDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWT 316
DPL++LYTSG+TG PKG+ G++ TM ++ Q+DV++T
Sbjct: 262 EDPLFLLYTSGSTGA------------PKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFT 309
Query: 317 ASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALR 376
A D+GW+ GH+Y+ YGPL G ++++EG P P+ S+Y+ +I HKV + APTALR
Sbjct: 310 AGDIGWITGHTYVVYGPLLYGCATLVFEGTPA-YPNYSRYWDIIDEHKVTQFYVAPTALR 368
Query: 377 VIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF---NVTMLNHWWQTETG- 432
+++R +S SLR L GE E W + + +++ +WQTE+G
Sbjct: 369 LLKRAGDSYI--ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGS 426
Query: 433 HSITAHCL-GYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNV 491
H +T L G P S PF G I L
Sbjct: 427 HLVTP--LAGGVTPMKPG--SASFPFFG----------------------IDAVVLDP-- 458
Query: 492 PKGQNATHFTSVEVRIIRNDGSECEPHEL-GRIVVKLPLPPGTMSTLYKAPQRFMKIYFT 550
N G E G + VK P T++K R++ Y
Sbjct: 459 ------------------NTGEELNTSHAEGVLAVKAAW-PSFARTIWKNHDRYLDTYLN 499
Query: 551 KFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGV 610
+PGYY T D D++GYI++ R DDV+NV+GHRLST+ +E ++ P V + AV+G
Sbjct: 500 PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGF 559
Query: 611 PEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYC 670
+ G+ + F V++K S
Sbjct: 560 NDDLTGQ-------------------AVAAF---------------VVLKN-KSSWSTAT 584
Query: 671 TRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGK 711
++I K L VR+ IGP AA KL V LP+TRSGK
Sbjct: 585 DDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGK 625
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 438 bits (1128), Expect = e-146
Identities = 148/715 (20%), Positives = 247/715 (34%), Gaps = 160/715 (22%)
Query: 31 AYRKSIEAPESFWTDV-GNMATWSKKWDRILDNSD-----QPFTKWFVGGEINACYNAID 84
+ D +M + ++ D + F K V N Y+ +D
Sbjct: 5 HHHHHHHHSSGHIDDDDKHMTSLLSQFVSKTDFESYEDFQENF-KILVPENFNFAYDVVD 63
Query: 85 RHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLI 144
+ +K+A+I + + T+ +L+ A G+ GD V++ +
Sbjct: 64 VYARDS-PEKLAMIWCDD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSR 121
Query: 145 PEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTIL 204
+ ML +LGAI R++ R+E A K+I+ + P +V
Sbjct: 122 YDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQV------- 174
Query: 205 NEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSH----RCVPVEANDPL 260
E + D I ++ ++ G+ + V + D
Sbjct: 175 ---DEAHAECGD---IPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKNEDIC 228
Query: 261 YILYTSGTTGKPQGCSELRSEDQPKGILRPVG---GHIATLAWTMSVIYNMGQDDVWWTA 317
+ ++SGT G PK + GHI T + N+ D + +T
Sbjct: 229 LVYFSSGTAGF------------PKMVEHDNTYPLGHILTAKY----WQNVEDDGLHYTV 272
Query: 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRV 377
+D GW YG AG +Y+ DR + + V PT R
Sbjct: 273 ADSGWGKCVWGKLYGQWIAGCAVFVYD--YDR-FEAKNMLEKASKYGVTTFCAPPTIYRF 329
Query: 378 IRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITA 437
+ +ED + Y+ +L+Y VAGE + E N + + ++ + QTET +I
Sbjct: 330 LIKEDL-----SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIAT 384
Query: 438 HCLGYQHDTVPPKY-STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQN 496
+ PK S G P PGY
Sbjct: 385 ------FPWMEPKPGSIGKPTPGYK----------------------------------- 403
Query: 497 ATHFTSVEVRIIRNDGSECEPHELGRIVVKL--PLPPGTMSTLYKAPQRFMKIYFTKFPG 554
+ ++ DG CE E G IV+ P G K P+R + + G
Sbjct: 404 --------IELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW---HDG 452
Query: 555 YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPT 614
YY T D + DE+GY++ R DD+I +G+++ +E ++ HP V + A+ GVP+P
Sbjct: 453 YYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPV 512
Query: 615 KGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSD 674
+G++ I VL K Y P
Sbjct: 513 RGQVIKA-TI--------------------------------VLTKDYTP---------S 530
Query: 675 EEIGKELKELVREAIGPIAA-----FKLSTSVTGLPRTRSGKTARKSIVDMARNK 724
+ + EL++ V+ P F V LP+T SGK R I D +++
Sbjct: 531 DSLKNELQDHVKNVTAPYKYPRIIEF-----VPELPKTISGKIRRVEIRDKDQSQ 580
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 397 bits (1023), Expect = e-130
Identities = 131/672 (19%), Positives = 223/672 (33%), Gaps = 150/672 (22%)
Query: 67 FTKWFVGGEINACYNAIDRHVERGMAK----KVALIHDSPVTKSIRKVTYAELQEQVSLL 122
+ V + N + +D + A AL + + EL E
Sbjct: 28 WGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNG-KGKELMWNFRELSENSQQA 86
Query: 123 AGSLA-AIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAK 181
A L+ A G+ GDRV + +P +PE + +L +R G I + ++ RL+ +K
Sbjct: 87 ANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSK 146
Query: 182 PKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDD 241
K I+A ++ E+ + + + + V E + +
Sbjct: 147 AKAIVAGDEVIQ---------------EVDTVASECPSLRIKLLVSEKS--CDGWLNFKK 189
Query: 242 ALA-QRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAW 300
L +H CV + + I +TSGT+G PK
Sbjct: 190 LLNEASTTHHCVETGSQEASAIYFTSGTSGL------------PKMAEHSYSSLGLKAKM 237
Query: 301 TMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVI 360
+ D+ WT SD GW++ P A G + ++ DP + +
Sbjct: 238 DAGWT-GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPK---FDPLVILKTL 293
Query: 361 HNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNV 420
++ + + AP R++ ++D + Y L+ GE ET +
Sbjct: 294 SSYPIKSMMGAPIVYRMLLQQDL-----SSYKFPHLQNCVTVGESLLPETLENWRAQTGL 348
Query: 421 TMLNHWWQTETGHSITAHCLGYQHDTVPPKY-STGLPFPGYDGKYVNIVMLNWLDGRAHC 479
+ + QTETG + T+ K G YD
Sbjct: 349 DIRESYGQTETGLTCMV------SKTMKIKPGYMGTAASCYD------------------ 384
Query: 480 VRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLP--LPPGTMSTL 537
V+II + G+ P G I +++ P G S
Sbjct: 385 -------------------------VQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGY 419
Query: 538 YKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVL 597
P + ++ D G DE+GY R DD+IN +G+R+ S +E+ ++
Sbjct: 420 VDNPDKTAANI---RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALM 476
Query: 598 SHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRV 657
HP V +TAVI P+P +GE+ ++ V
Sbjct: 477 EHPAVVETAVISSPDPVRGEVVKA-FV--------------------------------V 503
Query: 658 LIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAA-----FKLSTSVTGLPRTRSGKT 712
L + E++ KEL++ V+ P F V LP+T +GK
Sbjct: 504 LASQFLSHDP-------EQLTKELQQHVKSVTAPYKYPRKIEF-----VLNLPKTVTGKI 551
Query: 713 ARKSIVDMARNK 724
R + D
Sbjct: 552 QRAKLRDKEWKM 563
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 309 bits (793), Expect = 6e-97
Identities = 122/662 (18%), Positives = 217/662 (32%), Gaps = 150/662 (22%)
Query: 57 DRILDNSDQP--FTKWFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAE 114
+ +L+ + P T N + R K A I D+ TY E
Sbjct: 2 EALLEKAANPPAATVEAPPALFNFAAYLFRLNETRA--GKTAYIDDT------GSTTYGE 53
Query: 115 LQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELC 174
L+E+ A +L +GV +R+L+ M V+ L + G + V +
Sbjct: 54 LEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYV 113
Query: 175 ARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPG 234
L H+ + +IA+ V+ + +ALE S + D C + + E P
Sbjct: 114 YMLTHSHARAVIASGALVQ---------NVTQALE--SAEHDGCQLI---VSQPRESEPR 159
Query: 235 YDILWDDALAQR-LSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGG 293
L+++ + + + +D + LY+SG+TGK PKG +
Sbjct: 160 LAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGK------------PKGTVHTHAN 207
Query: 294 HIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDP 353
T I + ++DV ++A+ + + G PL+ G T+++ + P
Sbjct: 208 LYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAER----PTA 263
Query: 354 SQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNW 413
+ + H+ + PT + + ++R AGE E
Sbjct: 264 DAIFARLVEHRPTVFYGVPTLYANMLVSPN----LPARADVAIRICTSAGEALPREIGER 319
Query: 414 AEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKY-STGLPFPGYDGKYVNIVMLNW 472
F +L+ TE H ++ G +Y +TG P PGY
Sbjct: 320 FTAHFGCEILDGIGSTEMLHIFLSNRAG------AVEYGTTGRPVPGY------------ 361
Query: 473 LDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPG 532
E+ + G E+G + +K P
Sbjct: 362 -------------------------------EIELRDEAGHAVPDGEVGDLYIK---GPS 387
Query: 533 TMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSAL 592
+ ++ F + + D NG R DD++ V+G +S +
Sbjct: 388 AAVMYWNNREKSRA-TFLG--EWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEV 444
Query: 593 EDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLT 652
E V++ H V + AV+GV ++
Sbjct: 445 EMVLVQHDAVLEAAVVGVDHG-GLVKT-RAFV---------------------------- 474
Query: 653 NPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTS---VTGLPRTRS 709
VL + + P E + +ELK V++ +A K V LP+T +
Sbjct: 475 ----VLKREFAP---------SEILAEELKAFVKDR---LAPHKYPRDIVFVDDLPKTAT 518
Query: 710 GK 711
GK
Sbjct: 519 GK 520
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 2e-55
Identities = 123/654 (18%), Positives = 202/654 (30%), Gaps = 161/654 (24%)
Query: 82 AIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYM 141
+ RH +A+I R+++Y EL + LA SL G+ G+ L+ +
Sbjct: 32 ILTRHAASD---SIAVIDGE------RQLSYRELNQAADNLACSLRRQGIKPGETALVQL 82
Query: 142 PLIPEAIVSMLATVRLGAIHSVVFGGFA--ARELCARLEHAKPKVIIAASCGVEPNKVVR 199
+ E ++ A ++LG V F+ EL A +P ++IA + +
Sbjct: 83 GNVAELYITFFALLKLGVA--PVLALFSHQRSELNAYASQIEPALLIAD----RQHALFS 136
Query: 200 YKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDP 259
LN + S ++ G L D P A++
Sbjct: 137 GDDFLNTFVTEHSSIRVVQLLND----------SGEHNLQDAINHPAEDFTATPSPADEV 186
Query: 260 LYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGH--IATLAWTMSVIYNMGQDDVWWTA 317
Y + GTTG PK I R H I Q + A
Sbjct: 187 AYFQLSGGTTGT------------PKLIPR---THNDYYYSVRRSVEICQFTQQTRYLCA 231
Query: 318 SDM----GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPT 373
G AG T V+ P + + +I H+VN P
Sbjct: 232 IPAAHNYAMSSP---GSLGVFLAGGTVVLAA-----DPSATLCFPLIEKHQVNVTALVPP 283
Query: 374 ALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGH 433
A+ + + + ++ SL+ L V G + + E
Sbjct: 284 AVSLWLQALIEG--ESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEG-- 339
Query: 434 SITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPK 493
+ L D+ T G + P+
Sbjct: 340 LVNYTRL---DDSAEKIIHT--------------------QGYP----MCPD-------- 364
Query: 494 GQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFP 553
EV + +G+ E+GR++ + P T YK+PQ F
Sbjct: 365 ---------DEVWVADAEGNPLPQGEVGRLMTR---GPYTFRGYYKSPQHNASA-FDA-N 410
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G+Y + D D GYI V R+ D IN G +++ +E+++L HP V A++ + +
Sbjct: 411 GFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDE 470
Query: 614 TKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRS 673
GE C Y+ + PL
Sbjct: 471 LMGEKS-CAYLVVKEPLR------------------------------------------ 487
Query: 674 DEEIGKELKELVREAIGPIAAFKLSTS---VTGLPRTRSGKTARKSIVDMARNK 724
+++ +RE IA FKL V LP T GK +K + ++
Sbjct: 488 ----AVQVRRFLREQ--GIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR 535
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 197 bits (503), Expect = 3e-55
Identities = 121/654 (18%), Positives = 212/654 (32%), Gaps = 164/654 (25%)
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
+ + ++A+ + +Y EL + LA +G+ DRV++ +P
Sbjct: 31 LRDRAAK-YGDRIAITCGN------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLP 83
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFA--ARELCARLEHAKPKVIIAASCGVEPNKVVRY 200
I E + A RLGA+ VF + + E+ E A+ I + Y
Sbjct: 84 NIKEFFEVIFALFRLGAL--PVFALPSHRSSEITYFCEFAEAAAYIIP----DAYSGFDY 137
Query: 201 KTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPL 260
+++ + + + E + +D + + + V+++D
Sbjct: 138 RSLARQVQSKLP--------TLKNIIVAGE--AEEFLPLEDLHTEPV--KLPEVKSSDVA 185
Query: 261 YILYTSGTTGKPQGCSELRSEDQPKGILRPVGGH--IATLAWTMSVIYNMGQDDVWWTAS 318
++ + G+TG K I R H + + V+ A
Sbjct: 186 FLQLSGGSTGL------------SKLIPRT---HDDYIYSLKRSVEVCWLDHSTVYLAAL 230
Query: 319 DMGWVVGHSY--ICYG---PLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPT 373
M H+Y G L AG V+ P P + +I KV P
Sbjct: 231 PM----AHNYPLSSPGVLGVLYAGGRVVLSPS-----PSPDDAFPLIEREKVTITALVPP 281
Query: 374 ALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGH 433
V D+ + SL+ L V G E + F T+ + E
Sbjct: 282 LAMVWM----DAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEG-- 335
Query: 434 SITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPK 493
+ L D +T G+ + P
Sbjct: 336 LVNYTRLD---DPEEIIVNT--------------------QGKP----MSPY-------- 360
Query: 494 GQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFP 553
E R+ + + +P E G ++ + P T+ YKA + FT+
Sbjct: 361 ---------DESRVWDDHDRDVKPGETGHLLTR---GPYTIRGYYKAEEHNAAS-FTE-D 406
Query: 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEP 613
G+Y T D +GYI V R D IN G +++ +E+ +L+HP V D A++ +P+
Sbjct: 407 GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQ 466
Query: 614 TKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRS 673
GE C++I R +
Sbjct: 467 FLGERS-CVFIIP-------------------RDEAP----------------------- 483
Query: 674 DEEIGKELKELVREAIGPIAAFKLSTS---VTGLPRTRSGKTARKSIVDMARNK 724
ELK +RE +AA+K+ V P+T GK ++K++ + K
Sbjct: 484 KAA---ELKAFLRER--GLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEK 532
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 196 bits (502), Expect = 6e-55
Identities = 113/655 (17%), Positives = 213/655 (32%), Gaps = 162/655 (24%)
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
+ V+ +A+I R+++Y EL + LA LA G+ GD L+ +P
Sbjct: 36 LTVGVQS-HPHSLAIICGE------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLP 88
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFA--ARELCARLEHAKPKVIIAASCGVEPNKVVRY 200
+ E + A ++ G + V+ ++ EL A ++ +PK++I + ++V
Sbjct: 89 NVAEFYIVFFALLKAGVV--VLNALYSHRQYELNAFIKQIQPKLLIGS----RQHEVFSN 142
Query: 201 KTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPL 260
++ +++ + + + T + W + A+ A++
Sbjct: 143 NQFIDSLHDVNLSP-------EIILMLNHQATDFGLLDWIETPAETFVDF-SSTPADEVA 194
Query: 261 YILYTSGTTGKPQGCSELRSEDQPKGILRPVGGH--IATLAWTMSVIYNMGQDDVWWTAS 318
+ + G+TG PK I R H + I + + A
Sbjct: 195 FFQLSGGSTGT------------PKLIPR---THNDYDYSVRASAEICGLNSNTRLLCAL 239
Query: 319 DMGWVVGHSY--ICYG---PLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPT 373
H++ G L AG VM P+P + +I H+VN P+
Sbjct: 240 PA----PHNFMLSSPGALGVLHAGGCVVMAP-----NPEPLNCFSIIQRHQVNMASLVPS 290
Query: 374 ALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGH 433
A+ + + + SL+ L V G + N + + E
Sbjct: 291 AVIMW----LEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEG-- 344
Query: 434 SITAHCLGYQHDTVPPKYST-GLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVP 492
+ L D+ ++T G P D
Sbjct: 345 LVNYTRL---DDSDEQIFTTQGRPISSDD------------------------------- 370
Query: 493 KGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKF 552
E++I+ E E+G + + P T Y++P+ ++ F +
Sbjct: 371 -----------EIKIVDEQYREVPEGEIGMLATR---GPYTFCGYYQSPEHNSQV-FDE- 414
Query: 553 PGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPE 612
YY + D +G + V R D IN G ++++ +E ++L HP+V A++ + +
Sbjct: 415 DNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVD 474
Query: 613 PTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTR 672
GE C +I R L
Sbjct: 475 EQFGEKS-CAFIVS-------------------RNPELKA-------------------- 494
Query: 673 SDEEIGKELKELVREAIGPIAAFKLSTS---VTGLPRTRSGKTARKSIVDMARNK 724
+ + L E IA +KL + LP T GK +K + +
Sbjct: 495 --VVLRRHLME------LGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTS 541
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 190 bits (486), Expect = 5e-53
Identities = 100/559 (17%), Positives = 173/559 (30%), Gaps = 147/559 (26%)
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
+ + + A + S + ++TYA++ + A L A+G++ GDRV + MP
Sbjct: 22 LRQRATV-SPRLQAYVEPS----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMP 76
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202
E +LGA+ + AA E+ L + KV+I +
Sbjct: 77 NSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGA---------PSAP 127
Query: 203 ILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYI 262
+++ Q G D L + + V +D L+I
Sbjct: 128 VIDAIRA------------QADPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLFI 175
Query: 263 LYTSGTTGKPQGCSELRSEDQPKGILRPVGGH--IATLAWTMSVIYNMGQDDVWWTASDM 320
+YTSGTTG P+G V H + + A + + ++ D M
Sbjct: 176 MYTSGTTGHPKGV---------------VHTHESVHSAASSWASTIDVRYRDRLLLPLPM 220
Query: 321 ----GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALR 376
G+T + D ++ + +I +V P L
Sbjct: 221 FHVAALTTV-----IFSAMRGVTLISM-----PQFDATKVWSLIVEERVCIGGAVPAILN 270
Query: 377 VIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWWQTETGHSI 435
+R+ + A+ RY G K +A N+ ++ + TE+
Sbjct: 271 FMRQVPE----FAELDAPDFRYFITGGAPMPEALIKIYAA--KNIEVVQGYALTESC-GG 323
Query: 436 TAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQ 495
L S G
Sbjct: 324 GTLLLSEDALRKA--GSAGRATMF------------------------------------ 345
Query: 496 NATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGY 555
+V + +DG E E G +V+K + Y
Sbjct: 346 -------TDVAVRGDDGVIREHGE-GEVVIK---SDILL------------------KEY 376
Query: 556 YD---------------TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHP 600
++ T D G D+ GY+Y+ R D+I G + + +E V++ P
Sbjct: 377 WNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVP 436
Query: 601 DVGDTAVIGVPEPTKGEIP 619
V + AVIG+P+ GEI
Sbjct: 437 GVSEVAVIGLPDEKWGEIA 455
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 186 bits (476), Expect = 1e-51
Identities = 101/560 (18%), Positives = 166/560 (29%), Gaps = 152/560 (27%)
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
R+ + A + D ++T+ + + LA L GV GDRV I
Sbjct: 12 YRRNAAL-FPDRTAFMVDG------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQ 64
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202
E I + A +GAI V A E+ L P V++A + Y+
Sbjct: 65 NCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGT---------DYRD 115
Query: 203 ILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYI 262
I+ L ++ + + + LA A D I
Sbjct: 116 IVAGVLPSLGGV--------KKAYAIGDGSGPFAPF--KDLASDTPFSAPEFGAADGFVI 165
Query: 263 LYTSGTTGKPQGCSELRSEDQPKGILRPVGGH--IATLAWTMSVIYNMGQDDVWWTASDM 320
++T+ G+P+G + + ++ + + + DV +
Sbjct: 166 IHTAAVGGRPRGA---------------LISQGNLLIAQSSLVDAWRLTEADVNLGMLPL 210
Query: 321 ----GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALR 376
G + AG SV+ DP+Q R I HKV + L
Sbjct: 211 FHVTGLGLM-----LTLQQAGGASVIA-----AKFDPAQAARDIEAHKVTVMAEFAPMLG 260
Query: 377 VIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSIT 436
I + A SLR + E + N T + Q+ET S
Sbjct: 261 NILDQ------AAPAQLASLRAVTGLDTPETIER--FEATCPNATFWATFGQSET--SGL 310
Query: 437 AHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQN 496
+ Y+ S G P
Sbjct: 311 STFAPYRDRPK----SAGRPLFW------------------------------------- 329
Query: 497 ATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYY 556
V ++ + P E+G IV++ P F GY+
Sbjct: 330 ------RTVAVVDAEDRPLPPGEVGEIVLR-------------GPTVF--------KGYW 362
Query: 557 D---------------TMDAGYYDENGYIYVTARDD--DVINVAGHRLSTSALEDVVLSH 599
+ T D G +D +GY++ R ++I G + + +E + H
Sbjct: 363 NNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQH 422
Query: 600 PDVGDTAVIGVPEPTKGEIP 619
P + D VIGVP+P E
Sbjct: 423 PAIADAVVIGVPDPQWSEAI 442
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 179 bits (457), Expect = 3e-49
Identities = 80/559 (14%), Positives = 158/559 (28%), Gaps = 143/559 (25%)
Query: 81 NAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIY 140
+ + ++ +A+ TY L + SLLA L RV +Y
Sbjct: 5 FWLYKQAQQ-NGHHIAITDGQ------ESYTYQNLYCEASLLAKRL---KAYQQSRVGLY 54
Query: 141 MPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRY 200
+ ++I+ + A +++ E+ ++ ++I +
Sbjct: 55 IDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS 114
Query: 201 KTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQR--LSHRCVPVEAND 258
+ A + + + + YD + + + + +D
Sbjct: 115 LDDIEFAGRDITTNG----------LLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDD 164
Query: 259 PLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTAS 318
I++TSGTTG K + + H A+ A +D W +
Sbjct: 165 IASIMFTSGTTGP------------QKAVPQTFRNHYAS-AIGCKESLGFDRDTNWLSVL 211
Query: 319 DM----GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTA 374
+ G V + G T + + Q +I N ++ + P
Sbjct: 212 PIYHISGLSV-----LLRAVIEGFTVRIV-----DKFNAEQILTMIKNERITHISLVPQT 261
Query: 375 LRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHS 434
L + ++ + +L+ + + G A + +N+ + N + TET S
Sbjct: 262 LNWLMQQ-------GLHEPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETC-S 312
Query: 435 ITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKG 494
P + G+P
Sbjct: 313 QFLTATPEMLHARP--DTVGMPSAN----------------------------------- 335
Query: 495 QNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPG 554
V+V+I + G +++K M G
Sbjct: 336 --------VDVKIKNPNK-----EGHGELMIK---GANVM------------------NG 361
Query: 555 YYD--------------TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHP 600
Y T D D GY+ + R D+I G + +E V P
Sbjct: 362 YLYPTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFP 421
Query: 601 DVGDTAVIGVPEPTKGEIP 619
+ D +G P+ T G++P
Sbjct: 422 GISDAVCVGHPDDTWGQVP 440
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 1e-48
Identities = 98/567 (17%), Positives = 169/567 (29%), Gaps = 156/567 (27%)
Query: 81 NAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIY 140
+ R R AL + ++T+AEL+ +V +A L A G+ RV +
Sbjct: 6 EMLRRAATR-APDHCALAVPA----RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVV 60
Query: 141 MPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRY 200
P + ++++LA RLGA+ +++ + EL ++ + + A
Sbjct: 61 APNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIA------------ 108
Query: 201 KTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPL 260
+++ + G + + + E P
Sbjct: 109 -----VGRQVADAIFQ-------SGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPA 156
Query: 261 YILYTSGTTGKPQGCSELRSEDQPKG-ILRPVGGH--IATLAWTMSVIYNM--GQDDVWW 315
+I YTSGTTG PK I+ + MS + G+ +V
Sbjct: 157 FIFYTSGTTGL------------PKAAIIP----QRAAESRVLFMSTQVGLRHGRHNVVL 200
Query: 316 TASDM----GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTA 371
+ G+ LA T V+ E P +++ +V LF
Sbjct: 201 GLMPLYHVVGFFAV----LVAALALDGTYVVVEE-----FRPVDALQLVQQEQVTSLFAT 251
Query: 372 PTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTET 431
PT L + + G+ DSLR++ AG + +N + TE
Sbjct: 252 PTHLDALAAAAAHA--GSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEA 309
Query: 432 GHSITAHCLGYQHDTVPPKY-STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKN 490
+S+ PK + P
Sbjct: 310 MNSLYMR---------QPKTGTEMAPGFF------------------------------- 329
Query: 491 VPKGQNATHFTSVEVRIIRNDGS---ECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKI 547
EVRI+R G E G ++V
Sbjct: 330 ------------SEVRIVRIGGGVDEIVANGEEGELIVA--ASDSAF------------- 362
Query: 548 YFTKFPGYYD---------------TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSAL 592
GY + T D + G + + R DD+I G + S +
Sbjct: 363 -----VGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEI 417
Query: 593 EDVVLSHPDVGDTAVIGVPEPTKGEIP 619
E V+ + P V + VIG+ + G+
Sbjct: 418 ERVLGTAPGVTEVVVIGLADQRWGQSV 444
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 2e-47
Identities = 109/533 (20%), Positives = 171/533 (32%), Gaps = 139/533 (26%)
Query: 108 RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167
K++YAEL + +A L A G+ GDRV EA+V LATVR G ++ +
Sbjct: 27 DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTA 86
Query: 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE 227
+ EL + A+PK+++ + + +
Sbjct: 87 YTLHELDYFITDAEPKIVVCDP---------SKRDGIAAIAA------------KVGATV 125
Query: 228 EAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGI 287
E G L D A + + A+D ILYTSGTTG+ KG
Sbjct: 126 ETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGR------------SKG- 172
Query: 288 LRPVGGHIATL--------AWTMSVIYNMGQDDVWWTASDM----GWVVGHSYICYGPLA 335
A L + T+ + DDV A + G V L
Sbjct: 173 --------AMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA----SNVTLF 220
Query: 336 AGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395
A + + DP + ++ + L PT + + + + +T
Sbjct: 221 ARGSMIFLPK-----FDPDKILDLM--ARATVLMGVPTFYTRLLQSPRL----TKETTGH 269
Query: 396 LRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGL 455
+R +T +L + TET + + Y D VP + G
Sbjct: 270 MRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNP---YDGDRVP--GAVGP 324
Query: 456 PFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRND-GSE 514
PG V R+ + G E
Sbjct: 325 ALPG-------------------------------------------VSARVTDPETGKE 341
Query: 515 CEPHELGRIVVKLP--------LPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDE 566
++G I VK P +P T S G++ T D G DE
Sbjct: 342 LPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDD-------------GFFITGDLGKIDE 388
Query: 567 NGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIP 619
GY+++ R D++ G + +E + + P V ++AVIGVP GE
Sbjct: 389 RGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGV 441
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 1e-44
Identities = 89/572 (15%), Positives = 178/572 (31%), Gaps = 147/572 (25%)
Query: 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVL 138
+ A+ R+ +A +TYAE E LA ++ G++ R++
Sbjct: 26 LHKAMKRYALVP--GTIAFTDAH----IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIV 79
Query: 139 IYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVV 198
+ + + +L + +G + + REL + ++P V+ + G++
Sbjct: 80 VCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQ----- 134
Query: 199 RYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVE--- 255
ILN ++ + II + Y + + VP
Sbjct: 135 ---KILNVQKKLPIIQK---IIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDR 188
Query: 256 ANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTM----SVIYNMGQD 311
I+ +SG+TG P KG+ +
Sbjct: 189 DKTIALIMNSSGSTGLP------------KGV--------------ALPHRTACVRFSHA 222
Query: 312 DVWWTASDMGW---VVG-----HSY---ICYGPLAAGITSVMYEGKPDRTPDPSQYYRVI 360
+ + ++ H + G L G V+ + + R +
Sbjct: 223 RDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLM-----YRFEEELFLRSL 277
Query: 361 HNHKVNGLFTAPT-ALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFN 419
++K+ PT + D +Y +L + G E K F+
Sbjct: 278 QDYKIQSALLVPTLFSFFAKSTLID-----KYDLSNLHEIASGGAPLSKEVGEAVAKRFH 332
Query: 420 VTMLNHWWQ----TETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDG 475
+ + Q TET +I G + G P ++ K V++
Sbjct: 333 LPGI---RQGYGLTETTSAILITPEGDDKPG-----AVGKVVPFFEAKVVDL-------- 376
Query: 476 RAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLP------- 528
+ G ++ G + V+ P
Sbjct: 377 ----------------------------------DTGKTLGVNQRGELCVRGPMIMSGYV 402
Query: 529 -LPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRL 587
P T + + K G+ + D Y+DE+ + ++ R +I G+++
Sbjct: 403 NNPEATNALIDKD-------------GWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 449
Query: 588 STSALEDVVLSHPDVGDTAVIGVPEPTKGEIP 619
+ + LE ++L HP++ D V G+P+ GE+P
Sbjct: 450 APAELESILLQHPNIFDAGVAGLPDDDAGELP 481
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 1e-44
Identities = 103/554 (18%), Positives = 168/554 (30%), Gaps = 148/554 (26%)
Query: 82 AIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYM 141
A+ A + AL R +TYAEL AG + RV ++
Sbjct: 27 ALSPAPTGAPADRPALRFGE------RSLTYAELAAAAGATAG-----RIGGAGRVAVWA 75
Query: 142 PLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYK 201
E V+++A + G + +EL L + P +++
Sbjct: 76 TPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVL--------------- 120
Query: 202 TILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL--WDDALAQRLSHRCVPVEANDP 259
+AEL P L D + R + + DP
Sbjct: 121 -----------------------APPDAELPPALGALERVDVDVRARGAVPEDGADDGDP 157
Query: 260 LYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASD 319
++YTSGTTG P KG + P +AT ++ + +DV
Sbjct: 158 ALVVYTSGTTGPP------------KGAVIPRRA-LATTLDALADAWQWTGEDVLVQGLP 204
Query: 320 MGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTA-LRVI 378
+ V G GPL G + R ++ LF PT R+
Sbjct: 205 LFHVHGLVLGILGPLRRGGSVRHLGR-----FSTEGAARELN-DGATMLFGVPTMYHRIA 258
Query: 379 RREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAH 438
D L + R L + ++ + TET +
Sbjct: 259 ETLPADPELAKALA--GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTET--LMNTS 314
Query: 439 CLGYQHDTVPPKY-STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNA 497
P+ + G+P PG
Sbjct: 315 VR----ADGEPRAGTVGVPLPG-------------------------------------- 332
Query: 498 THFTSVEVRIIRNDGSECEPH---ELGRIVVKLP--------LPPGTMSTLYKAPQRFMK 546
VE+R++ DG+ +G I V+ P P T + +
Sbjct: 333 -----VELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTED------ 381
Query: 547 IYFTKFPGYYDTMDAGYYDENGYIYVTARDD-DVINVAGHRLSTSALEDVVLSHPDVGDT 605
G++ T D D +GY+ + R D+I G+++ +E+ +L HP+V +
Sbjct: 382 -------GFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREA 434
Query: 606 AVIGVPEPTKGEIP 619
AV G P+P GE
Sbjct: 435 AVTGEPDPDLGERI 448
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 4e-44
Identities = 91/572 (15%), Positives = 180/572 (31%), Gaps = 148/572 (25%)
Query: 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVL 138
++R+ + G +A + + +YAE E+ L +L G+ R+
Sbjct: 29 LRKYMERYAKLG---AIAFTNAV----TGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIA 81
Query: 139 IYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVV 198
+ E + ++A + +G + + REL L +KP ++ ++ G++
Sbjct: 82 LCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLD----- 136
Query: 199 RYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVE--- 255
+ + + I+ + V+ + + + VE
Sbjct: 137 ----KVITVQKTVTTIKTIVILDSK--VDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDR 190
Query: 256 ANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTM----SVIYNMGQD 311
I+ +SG+TG P KG+ +++
Sbjct: 191 KEQVALIMNSSGSTGLP------------KGV--------------QLTHENIVTRFSHA 224
Query: 312 DVWWTASDMGW---VVG-----HSY---ICYGPLAAGITSVMYEGKPDRTPDPSQYYRVI 360
+ + V+ H + G L G VM D + + +
Sbjct: 225 RDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLT-----KFDEETFLKTL 279
Query: 361 HNHKVNGLFTAPT-ALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFN 419
++K + PT + + E + +Y +L + G E + FN
Sbjct: 280 QDYKCTSVILVPTLFAILNKSELLN-----KYDLSNLVEIASGGAPLSKEVGEAVARRFN 334
Query: 420 VTMLNHWWQ----TETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDG 475
+ + Q TET + + ++G P + K +++
Sbjct: 335 LPGVR---QGYGLTET--TSAIII---TPEGDDKPGASGKVVPLFKAKVIDL-------- 378
Query: 476 RAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPL------ 529
+ P+ G + VK P+
Sbjct: 379 ----------------------------------DTKKSLGPNRRGEVCVKGPMLMKGYV 404
Query: 530 --PPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRL 587
P T + + G+ T D GYYDE + ++ R +I G+++
Sbjct: 405 NNPEATKELIDEE-------------GWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQV 451
Query: 588 STSALEDVVLSHPDVGDTAVIGVPEPTKGEIP 619
+ LE V+L HP + D V GVP+P GE+P
Sbjct: 452 PPAELESVLLQHPSIFDAGVAGVPDPVAGELP 483
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 6e-44
Identities = 103/571 (18%), Positives = 171/571 (29%), Gaps = 148/571 (25%)
Query: 83 IDRHVERGMAKKVALIHDSPVTKSI--RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIY 140
ID E+ +K A+I P S + + E+ E LA ++ GV G+ V +
Sbjct: 25 IDAAAEK-FGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVC 83
Query: 141 MPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRY 200
+P + ++++ A R+ A + + + EL L ++ ++ S E
Sbjct: 84 IPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYE------- 136
Query: 201 KTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVE---AN 257
LE + VE + G + + S V+
Sbjct: 137 --NFKPVLEKTG-------------VERVFVVGGEVNSLSEVMDSG-SEDFENVKVNPEE 180
Query: 258 DPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTM----SVIYNMGQDDV 313
D I YT GTTG P+G M ++ N Q V
Sbjct: 181 DVALIPYTGGTTGMPKGV--------------------------MLTHFNLAANALQLAV 214
Query: 314 WWTASDMGWVVG-----HSY---ICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKV 365
S M +VG HS + + G V+ + I +K
Sbjct: 215 ATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVM-----GMFNQEMLAENIEKYKG 269
Query: 366 NGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNH 425
+ P AL V+ + S Y L+ K N
Sbjct: 270 TFSWAVPPALNVLVNTLESSN--KTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNP 327
Query: 426 WWQ-------TETGHSITAHCLGYQHDTVPPKY-STGLPFPGYDGKYVNIVMLNWLDGRA 477
+ TE K + G+P
Sbjct: 328 RLRHNQIWGMTEA--CPMVTT---NPPLRLDKSTTQGVPMSD------------------ 364
Query: 478 HCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLP-------- 528
+E+++I DG E E G IV++ P
Sbjct: 365 -------------------------IELKVISLEDGRELGVGESGEIVIRGPNIFKGYWK 399
Query: 529 LPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLS 588
+ + ++ T D G+ DE G+++ R +VI G+ ++
Sbjct: 400 REKENQECWWYDEKG---------RKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIA 450
Query: 589 TSALEDVVLSHPDVGDTAVIGVPEPTKGEIP 619
LE +++ H V D AVIG P+ GE+P
Sbjct: 451 PFELEALLMKHEAVMDVAVIGKPDEEAGEVP 481
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 2e-43
Identities = 99/550 (18%), Positives = 195/550 (35%), Gaps = 135/550 (24%)
Query: 94 KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153
K LI+ + + TYA+++ +A L IG+ GD +++++P PE +++ L
Sbjct: 38 KPCLINGA----NGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLG 93
Query: 154 TVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSC 213
GAI + EL + ++ K++I +C E + + S
Sbjct: 94 ASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYE---------KVKDFARESDV 144
Query: 214 KPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSH-RCVPVEANDPLYILYTSGTTGKP 272
K ++ CV+ A P + + + + V + +D + + Y+SGTTG
Sbjct: 145 K----VM----CVDSA---PDGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGL- 192
Query: 273 QGCSELRSEDQPKGIL---RPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVG---- 325
PKG++ + + +A + +DV ++
Sbjct: 193 -----------PKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDV---------ILCVLPM 232
Query: 326 -HSY----ICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPT-ALRVIR 379
H Y I L G ++ + +I +KV+ P + + +
Sbjct: 233 FHIYALNSIMLCGLRVGAPILIM-----PKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAK 287
Query: 380 REDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAH 438
D D ++ SLR + G E ++ F + + TE G + A
Sbjct: 288 SPDLD-----KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAG-PVLAM 341
Query: 439 CLGYQHDTVPPKY-STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNA 497
CL + + K + G + K V+
Sbjct: 342 CLAFAKEPFDIKPGACGTVVRNAEMKIVDP------------------------------ 371
Query: 498 THFTSVEVRIIRNDGSECEPHELGRIVVKLP--------LPPGTMSTLYKAPQRFMKIYF 549
G+ ++ G I ++ P T T+ K
Sbjct: 372 ------------ETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKE--------- 410
Query: 550 TKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIG 609
G+ T D GY D++ +++ R ++I G +++ + LE ++++HP++ D AV+G
Sbjct: 411 ----GWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVG 466
Query: 610 VPEPTKGEIP 619
+ + GE+P
Sbjct: 467 LKDEDAGEVP 476
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 163 bits (415), Expect = 6e-42
Identities = 97/540 (17%), Positives = 180/540 (33%), Gaps = 107/540 (19%)
Query: 94 KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLA 153
K LI + P TY+++ +A + +GV+ D V++ +P PE ++S LA
Sbjct: 77 KPCLI-NGPTGHVY---TYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLA 132
Query: 154 TVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSC 213
GA + F E+ + + + K+II + V+ +
Sbjct: 133 ASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVD---------KIKPLQNDDGV 183
Query: 214 KPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQ 273
I V E + L V + +D + + Y+SGTTG
Sbjct: 184 V--IVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGL-- 239
Query: 274 GCSELRSEDQPKGIL---RPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYIC 330
PKG++ + + +A + DDV M + + I
Sbjct: 240 ----------PKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIM 289
Query: 331 YGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPT-ALRVIRREDKDSTLGA 389
L G ++ + + +I KV P L + + + +
Sbjct: 290 LCGLRVGAAILIM-----PKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETE----- 339
Query: 390 QYSTDSLRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVP 448
+Y S+R + E ++ F N + + TE G + A LG+ + P
Sbjct: 340 KYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAG-PVLAMSLGFAKEPFP 398
Query: 449 PKY-STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRI 507
K + G + K V+
Sbjct: 399 VKSGACGTVVRNAEMKIVDP---------------------------------------- 418
Query: 508 IRNDGSECEPHELGRIVVKLPL--------PPGTMSTLYKAPQRFMKIYFTKFPGYYDTM 559
+ G ++ G I ++ P T T+ K G+ T
Sbjct: 419 --DTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKD-------------GWLHTG 463
Query: 560 DAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIP 619
D G D++ +++ R ++I G +++ + LE +++ HPD+ D AV+ + E GE+P
Sbjct: 464 DIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVP 523
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 1e-31
Identities = 108/564 (19%), Positives = 186/564 (32%), Gaps = 125/564 (22%)
Query: 85 RHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLI 144
+K + T + + TYAE+ ++ L G L A+GV GDRV
Sbjct: 25 ERAAALFGRKEVVSRL--HTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNH 82
Query: 145 PEAIVSMLATVRLGAI-HSV---VFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRY 200
+ + A +GA+ H+ + +E+ L HA+ KV++ +PN
Sbjct: 83 FRHLEAYFAVPGMGAVLHTANPRLS----PKEIAYILNHAEDKVLL-----FDPN----L 129
Query: 201 KTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPL 260
++ + ++ +E +++AL + VP E
Sbjct: 130 LPLVEAIRGELKTVQHFVVM------DEKAPEGYLA--YEEALGEEADPVRVP-E-RAAC 179
Query: 261 YILYTSGTTGKPQGCSELRSEDQPKGIL---RPVGGHIATLAWTMSVIYNMGQDDVW-WT 316
+ YT+GTTG P KG++ R + +LA ++ + + DV
Sbjct: 180 GMAYTTGTTGLP------------KGVVYSHR--ALVLHSLAASLVDGTALSEKDVVLPV 225
Query: 317 ASDM----GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAP 372
M W Y G V+ P DP+ + V P
Sbjct: 226 VP-MFHVNAW--CLPYAA---TLVGAKQVL----PGPRLDPASLVELFDGEGVTFTAGVP 275
Query: 373 TALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETG 432
T + + + + +LR L V G E+ V + + TET
Sbjct: 276 TVWLALADYLEST----GHRLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQGYGLTETS 330
Query: 433 HSITAHCLGYQHDTVPP------KYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPES 486
+ + + +++ K TGLP P
Sbjct: 331 PVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPL--------------------------- 363
Query: 487 LRKNVPKGQNATHFTSVEVRIIRNDGSECEPH---ELGRIVVKLPLPPGTMSTLYKAPQR 543
V +R+ +G P LG + +K P Y +
Sbjct: 364 ----------------VRLRVADEEGRPV-PKDGKALGEVQLK---GPWITGGYYGNEEA 403
Query: 544 FMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVG 603
G++ T D +DE GY+ + R D+I G +S+ LE+ ++ HP V
Sbjct: 404 TRSALTPD--GFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVK 461
Query: 604 DTAVIGVPEPTKGEIPFCLYIKKR 627
+ AV+ +P P E P + R
Sbjct: 462 EAAVVAIPHPKWQERP-LAVVVPR 484
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 2e-23
Identities = 94/559 (16%), Positives = 164/559 (29%), Gaps = 147/559 (26%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAI----HSVVF 165
+TY +L + +A +L A G GDRVL+ I + L + G I +
Sbjct: 41 MTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQ 100
Query: 166 GGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRC 225
+ + ++KP +++ + D+ F
Sbjct: 101 EKLLDK-AQRIVTNSKPVIVLMIA--------------------------DHIKKFTADE 133
Query: 226 VEEAELTPGYDILWDDALAQRLSHRCVPVEA--NDPLYILYTSGTTGKPQGCSELRSEDQ 283
+ + +++ S P ND ++ YTSG+T
Sbjct: 134 LNTNPKFLKIPAIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTM------------H 181
Query: 284 PKGILRPVGGH--IATLAWTMSVIYNMGQDDVWWTAS------DMGWVVGHSYICYGPLA 335
PKG+ + H + + ++M + + S DMG + P+
Sbjct: 182 PKGV---MVSHHNLLDNLNKIFTSFHMNDETI--IFSWLPPHHDMGLIGCIL----TPIY 232
Query: 336 AGITSVMYEGKPDRTP-----DPSQYYRVIHNHKVNGLFTAPT-----ALRVIRREDKDS 385
GI ++M +P +P + + I +K +P ++ IR E
Sbjct: 233 GGIQAIMM------SPFSFLQNPLSWLKHITKYKATISG-SPNFAYDYCVKRIREEK--- 282
Query: 386 TLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHD 445
S F E ET + F G++ +
Sbjct: 283 --KEGLDLSSWVTAFNGAEPVREETM----EHFYQAF--------------KEF-GFRKE 321
Query: 446 TVPPKY---------STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQN 496
P Y + G P Y + D R H
Sbjct: 322 AFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQ--DHRVHFAD----------DNSPG 369
Query: 497 ATHFTSV-----EVRIIRND-GSECEPHELGRIVVK--------LPLPPGTMSTLYKAPQ 542
+ S EV+II D C+ ++G I V+ P T
Sbjct: 370 SYKLVSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAF----- 424
Query: 543 RFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVL-SHPD 601
+ Y T D G+ E +YVT R D+I + G +E ++ S
Sbjct: 425 AGKIKDDERSAIYLRTGDLGFLHE-NELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLH 483
Query: 602 V--GDTAVIGVPEPTKGEI 618
G A + E + ++
Sbjct: 484 HVLGKCAAFVIQEEHEYKL 502
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 6e-22
Identities = 56/355 (15%), Positives = 101/355 (28%), Gaps = 95/355 (26%)
Query: 95 VALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLAT 154
AL + + ++Y EL E+ + +A L G G V +Y E ++ +L
Sbjct: 481 PALTYSG------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGV 534
Query: 155 VRLGAIHSVVFGGF--------AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNE 206
++ G + R + L + ++
Sbjct: 535 LKAG-------AAYLPVDPKLPEDR-ISYMLADSAAACLLT------------------- 567
Query: 207 ALEISSCKPDYCIIFQRRCVEEAELTPGY----DILWDDALAQRLSHRCVPVEANDPLYI 262
+ E+A P I ++ S ++ NDP YI
Sbjct: 568 ---------------HQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAIDPNDPAYI 612
Query: 263 LYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVW-WTAS--- 318
+YTSGTTGK PKG + I L + D + ++
Sbjct: 613 MYTSGTTGK------------PKGNITTHAN-IQGLVKHVDY-MAFSDQDTFLSVSNYAF 658
Query: 319 DM-GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRV 377
D + Y + ++ D + +I VN +F +
Sbjct: 659 DAFTFDF------YASMLNAARLIIA--DEHTLLDTERLTDLILQENVNVMFATTALFNL 710
Query: 378 IRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWWQTET 431
+ +D LR + GE + ++N + TE
Sbjct: 711 LTDAGED-------WMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEG 758
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 3e-21
Identities = 51/355 (14%), Positives = 86/355 (24%), Gaps = 102/355 (28%)
Query: 95 VALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLAT 154
A+ V Y +L + L+ L G + +Y E+I +LA
Sbjct: 44 EAIRDRF------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAI 97
Query: 155 VRLGAIHSVVFGGF--------AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNE 206
+ G + AA ++I+
Sbjct: 98 LLSG-------HHYLYIDLKQPAAW-NAELCRQVDCRLILD------------------- 130
Query: 207 ALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTS 266
A P + A S A+ YI ++S
Sbjct: 131 ---------------CSTTPTPANGLP--CVPVRHLPAAPASVARPCFAADQIAYINFSS 173
Query: 267 GTTGKPQGCSELRSEDQPKGILRPVGGH--IATLAWTMSVIYNMGQDDVWWTASDMGWVV 324
GTTG+ PK I H I L ++V
Sbjct: 174 GTTGR------------PKAIACT---HAGITRLCL-GQSFLAFAPQMR--------FLV 209
Query: 325 GHSYI-------CYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRV 377
+G L G V+ DP ++I + + +
Sbjct: 210 NSPLSFDAATLEIWGALLNGGCCVLN---DLGPLDPGVLRQLIGERGADSAWLTASLFNT 266
Query: 378 IRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWWQTET 431
+ D D LR L G+ + + + ++N + TE
Sbjct: 267 LVDLDPD-------CLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTEN 314
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 3e-20
Identities = 56/364 (15%), Positives = 103/364 (28%), Gaps = 109/364 (29%)
Query: 95 VALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLAT 154
+ TY +L+ +A + ++ + A VL++ + + + +A
Sbjct: 21 PVYDCLG------ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVAL 74
Query: 155 V----------------RLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVV 198
R+ AI +E AKP +IIA
Sbjct: 75 TKSGHAYIPVDVHSAPERILAI----------------IEIAKPSLIIA----------- 107
Query: 199 RYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPG--YDILWDDALAQRLSHRCVPVEA 256
E + LA+ R V+
Sbjct: 108 -----------------------IEEFPLTIEGISLVSLSEIESAKLAEMPYERTHSVKG 144
Query: 257 NDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVI-YNMGQDDVWW 315
+D YI++TSGTTG+ PKG+ ++ W + +++ +
Sbjct: 145 DDNYYIIFTSGTTGQ------------PKGVQISHDNLLSFTNWMIEDAAFDVPKQPQ-- 190
Query: 316 TASDMGWVVGHSYI-------CYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGL 368
+ Y LA G T + D Q + I V
Sbjct: 191 ------MLAQPPYSFDLSVMYWAPTLALGGTLFAL--PKELVADFKQLFTTIAQLPVGIW 242
Query: 369 FTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWW 427
+ P+ + D Q +L + + GE T + E+ + ++N +
Sbjct: 243 TSTPSFADMAMLSDDFC----QAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYG 298
Query: 428 QTET 431
TE
Sbjct: 299 PTEA 302
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 2e-19
Identities = 54/361 (14%), Positives = 107/361 (29%), Gaps = 103/361 (28%)
Query: 95 VALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLAT 154
A + K+TY +L+E LA +++ +++Y + PE I++ L
Sbjct: 18 TAFVWRD------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71
Query: 155 V----------------RLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVV 198
V R+ I E++ K++++A+ + V
Sbjct: 72 VKAGHAYIPVDLSIPADRVQRI----------------AENSGAKLLLSATAVTVTDLPV 115
Query: 199 RYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEAND 258
R + N + V+ ++
Sbjct: 116 RIVSEDNLKD------------------------------IFFTHKGNTPNPEHAVKGDE 145
Query: 259 PLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTAS 318
YI+YTSG+TG PKG+ ++ W +N+ V
Sbjct: 146 NFYIIYTSGSTGN------------PKGVQITYNCLVSFTKW-AVEDFNLQTGQV----- 187
Query: 319 DMGWVVGHSYI-------CYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTA 371
++ + Y L G T D P + + + +
Sbjct: 188 ---FLNQAPFSFDLSVMDIYPSLVTGGTLWAI--DKDMIARPKDLFASLEQSDIQVWTST 242
Query: 372 PTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWWQTE 430
P+ + E S + +++ GE +E + E+ T++N + TE
Sbjct: 243 PSFAEMCLMEASFS----ESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTE 298
Query: 431 T 431
Sbjct: 299 A 299
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 8e-19
Identities = 51/364 (14%), Positives = 98/364 (26%), Gaps = 110/364 (30%)
Query: 95 VALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGV-SAGDRVLIYMPLIPEAIVSMLA 153
A + +TY EL EQ A ++ +L+Y + P IVS L
Sbjct: 18 DAFRSQG------QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71
Query: 154 TV----------------RLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKV 197
+V R+ I +E + +++I
Sbjct: 72 SVKAGHPYIPVDLSIPSERIAKI----------------IESSGAELLIH---------- 105
Query: 198 VRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSH--RCVPVE 255
+A + ++ L + V+
Sbjct: 106 ------------------------AAGLSIDAVGQQIQTVSAEELLENEGGSVSQDQWVK 141
Query: 256 ANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWW 315
++ YI+YTSG+TG PKG+ + W + + + +
Sbjct: 142 EHETFYIIYTSGSTGN------------PKGVQISAANLQSFTDW-ICADFPVSGGKI-- 186
Query: 316 TASDMGWVVGHSYI-------CYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGL 368
++ + Y L +G T D P + + +N
Sbjct: 187 ------FLNQAPFSFDLSVMDLYPCLQSGGTLHC--VTKDAVNKPKVLFEELKKSGLNVW 238
Query: 369 FTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWW 427
+ P+ +++ + +Q GE K E+ + N +
Sbjct: 239 TSTPSFVQMCLMDPGF----SQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYG 294
Query: 428 QTET 431
TE
Sbjct: 295 PTEA 298
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 85.2 bits (212), Expect = 2e-17
Identities = 64/373 (17%), Positives = 115/373 (30%), Gaps = 99/373 (26%)
Query: 95 VALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLAT 154
VA++ ++ ++TY EL + + LA G+ V I M + + +LA
Sbjct: 56 VAIVCEN------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAV 109
Query: 155 VRLGAIHSVVFGGF---------AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILN 205
L A GG R + L+ ++ ++++ + L
Sbjct: 110 --LKA------GGAYVPIDIEYPKER-IQYILDDSQARMLLT-------------QKHLV 147
Query: 206 EALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYT 265
+ F + D + ++ VP ++ D Y++YT
Sbjct: 148 HLIHNIQ--------FNGQVE---------IFEEDTIKIREGTNLHVPSKSTDLAYVIYT 190
Query: 266 SGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVG 325
SGTTG PKG + G + N+ + D
Sbjct: 191 SGTTGN------------PKGTMLEHKGISNLKVF-FENSLNVTEKDR--------IGQF 229
Query: 326 HSYI-------CYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVI 378
S + L G + + D D ++ + I+ ++ + PT + +
Sbjct: 230 ASISFDASVWEMFMALLTGASLYII--LKDTINDFVKFEQYINQKEITVITLPPTYVVHL 287
Query: 379 RREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWWQTE-TGHSIT 436
E S++ L AG W EK VT +N + TE T + T
Sbjct: 288 DPER----------ILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATT 334
Query: 437 AHCLGYQHDTVPP 449
P
Sbjct: 335 WVATKETIGHSVP 347
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 6e-17
Identities = 52/377 (13%), Positives = 103/377 (27%), Gaps = 88/377 (23%)
Query: 95 VALIHDSPVTKSI----RKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVS 150
A+ + S TY +L E + +A + + G + + + A
Sbjct: 37 KAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAI 95
Query: 151 MLATVRLGAIHSVVFGGF--------AARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202
++ ++ G + R L ++ +
Sbjct: 96 IVGIMKSG-------NTYVPIEAGLPNDR-KSFLLRDSRAAMAFVCDN------------ 135
Query: 203 ILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYI 262
+ +E+ + + ++ + ++ Q S N Y+
Sbjct: 136 -NFDGVELPP---------ETKVLDTKNQS-----FIENLSTQDTSDILNNYPENLDAYL 180
Query: 263 LYTSGTTGKPQGCS-ELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMG 321
LYTSG+TG P+G + + +G
Sbjct: 181 LYTSGSTGTPKGVRVSRH------NLSSFSDAWGKLIGNVAPKSLELGGVGK-------- 226
Query: 322 WVVGHSYI-------CYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTA 374
++ S + G+ +V +R R V P+
Sbjct: 227 FLCLASRAFDVHIGEMFLAWRFGLCAVT----GERLSMLDDLPRTFRELGVTHAGIVPSL 282
Query: 375 LRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWAEKSFNVTMLNHWWQTETGH 433
L +D+ L YL V GE T + W+ V ++N + TE
Sbjct: 283 LDQTGLVPEDAP--------HLVYLGVGGEKMTPRTQQIWSSSD-RVALVNVYGPTEV-- 331
Query: 434 SI--TAHCLGYQHDTVP 448
+I +A + DT
Sbjct: 332 TIGCSAGRILPDSDTRC 348
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 1e-13
Identities = 84/508 (16%), Positives = 145/508 (28%), Gaps = 128/508 (25%)
Query: 110 VTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFA 169
+T+++L + +A L+ G S GDRV+I P E +V+ L ++ G I +
Sbjct: 59 LTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQG 117
Query: 170 ARE---LCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCV 226
+ L + P I+ S V+ + V
Sbjct: 118 GVTDERSDSVLSDSSPVAILTTSSAVDD---------------------------VVQHV 150
Query: 227 EEAELTPGYDILWDDALAQRLSHRCVPVEA--NDPLYILYTSGTTGKPQGCSELRSEDQP 284
I+ D L + E Y+ YTSG+T P
Sbjct: 151 ARRPGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTR------------TP 198
Query: 285 KGIL---RPVGGHIATL--AWTMSVIYNMGQDDVW--WTAS--DMGWVVGHSYICYGPLA 335
G++ + V + L + + W DMG V+G P+
Sbjct: 199 AGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGIC----APIL 254
Query: 336 AGITSVMYEGKPDRTP-----DPSQYYRVIHNHKVNGLFTAPT-----ALRVIRREDKDS 385
G +V+ +P P+++ ++ + AP A R +D
Sbjct: 255 GGYPAVLT------SPVSFLQRPARWMHLMASDFHAFSA-APNFAFELAARRTTDDD--- 304
Query: 386 TLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHD 445
A ++ + E T K F A Q
Sbjct: 305 --MAGRDLGNILTILSGSERVQAATI----KRFADRF--------------ARF-NLQER 343
Query: 446 TVPPKY---------STGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQN 496
+ P Y +T P + + L+ G A +
Sbjct: 344 VIRPSYWLAEATVYVATSKPGQPPETVDFDTESLS--AGHA--KPCAGGGATSLISYMLP 399
Query: 497 ATHFTSVEVRIIRND-GSECEPHELGRIVVK--------LPLPPGTMSTLYKAPQRFMKI 547
+ VRI+ +D EC +G I V P + T
Sbjct: 400 RSP----IVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPG 455
Query: 548 YFTKFPGYYDTMDAGYYDENGYIYVTAR 575
T + T D+G+ + G +++ R
Sbjct: 456 --TPEGPWLRTGDSGFVTD-GKMFIIGR 480
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 64.0 bits (155), Expect = 5e-11
Identities = 35/272 (12%), Positives = 66/272 (24%), Gaps = 53/272 (19%)
Query: 221 FQRRCVEEAELTPGYDILWDDALAQRLSHR------------CVPVEANDPLYILYTSGT 268
F E+ P D+ + L Q + A+ + + GT
Sbjct: 43 FWLGMREQLNFDPIKDVKTINDLRQFSDISHCLRQEPVANLVPQGLPADSHPQVYESGGT 102
Query: 269 TGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMG---QDDVWWTASDMGWVVG 325
TG PK ++ A ++W MS + + +VG
Sbjct: 103 TGA------------PKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVG 150
Query: 326 HSYICYGPLAAGIT-----------SVMYEGKPDRTP-----DPSQYYRVIHNHKVNGLF 369
G+ + EG Q + N + L
Sbjct: 151 AINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLV 210
Query: 370 TAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF--NVTMLNHWW 427
T P LR + + + SL + + G + + + + +
Sbjct: 211 TTPPVLRELLKRPE----VVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYG 266
Query: 428 QTETGHSITAHCLGYQHDTVPPKYSTGLPFPG 459
T + + + V P
Sbjct: 267 STSALGVSRSLLITSESQQV----IYDSFSPF 294
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 1e-09
Identities = 80/628 (12%), Positives = 153/628 (24%), Gaps = 210/628 (33%)
Query: 25 NDKY---YDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYN 81
Y + P + ++ DR L N +Q F K
Sbjct: 88 RINYKFLMSPIKTEQRQPS------MMTRMYIEQRDR-LYNDNQVFAK------------ 128
Query: 82 AIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQ--VSL--LAGS----LAAIGVSA 133
+V R P K +R+ EL+ V + + GS +A V
Sbjct: 129 ---YNVSRL----------QPYLK-LRQALL-ELRPAKNVLIDGVLGSGKTWVAL-DVCL 172
Query: 134 GDRVLIYMP-----------LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKP 182
+V M PE ++ ML L ++
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK------------------LLYQI----- 209
Query: 183 KVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL---W 239
+PN R N L I S + + + + + E L +L
Sbjct: 210 ----------DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-----VLLNVQ 254
Query: 240 DDALAQRLSHRCVPVEANDPLYILYTSGTTG-----KPQGCSELRSEDQPKGILRPVGGH 294
+ + C IL T+ + + + +
Sbjct: 255 NAKAWNAFNLSC---------KILLTTRFKQVTDFLSAATTTHISLDHHSMTL------- 298
Query: 295 IATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSY------ICYG-PLAAGITSVMYEGKP 347
T S++ + + P I +
Sbjct: 299 --TPDEVKSLLLK---------------YLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 348 DRTPDPSQYYRVIHNHKVNGLFTA------PTALR------VIRREDKDSTLGAQYSTDS 395
++ ++ K+ + + P R + A T
Sbjct: 342 AT----WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS------AHIPTIL 391
Query: 396 LRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETG--HSI----TAHCLGYQ--HDTV 447
L ++ + K +++ + T SI H ++
Sbjct: 392 LSLIWFDVI--KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 448 PPKYSTGLPFPGYDGKYVNIVMLNWLDG--RAHCVRILPESLRKNVPKGQNATHFTSV-- 503
Y+ F D ++ +LD +H L KN+ + T F V
Sbjct: 450 VDHYNIPKTFDSDD------LIPPYLDQYFYSHIGHHL-----KNIEHPERMTLFRMVFL 498
Query: 504 -----EVRIIRNDGSECEPHEL-----------GRIVVKLPLPPGTMSTLYK-APQRFMK 546
E +I + + + I P ++ + P+
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 547 IYFTKFPGYYDTMDAGYYDENGYIYVTA 574
+ +K Y D + E+ I+ A
Sbjct: 559 LICSK---YTDLLRIALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 2e-07
Identities = 88/673 (13%), Positives = 183/673 (27%), Gaps = 186/673 (27%)
Query: 74 GEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQ---------EQVSLLAG 124
GE Y I E + KSI ++ E+ L
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 125 SLAAIGVSAGDRVL----------IYMPLIPEAIVSMLATVRLGAIHSVVFGG---FAAR 171
+L + + + + P+ E + T ++ FA
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 172 ELCARLEHAKPKVIIAASCGVEPNK-VVRY------KTILNEALEISSCKPDYCIIFQRR 224
+ RL+ + A + P K V+ KT + AL++ C Y +
Sbjct: 130 NVS-RLQ--PYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDV--CL-SYKV----- 176
Query: 225 CVEEAELTPGYDILW--------DDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCS 276
+ + I W + + + L + DP + + ++
Sbjct: 177 -----QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI---DPNWTSRSDHSSNIKLRIH 228
Query: 277 ELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVW----WTASDMGWVVGHSYIC-- 330
+++E + +P + L ++ +V W A ++ C
Sbjct: 229 SIQAELRRLLKSKP---YENCL-----LVL----LNVQNAKAWNAFNLS--------CKI 268
Query: 331 -----YGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRR--EDK 383
+ +T + + + +H T ++ + + +
Sbjct: 269 LLTTRF----KQVTDFL---------SAATTTHISLDHHSMT-LTPDEVKSLLLKYLDCR 314
Query: 384 DSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHW--WQTETGHSITAHCLG 441
L + T + R L + E W ++W + +I L
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATW----------DNWKHVNCDKLTTIIESSLN 364
Query: 442 YQHDTVPPKYSTGLP-FPGYDGKYVNI-----VMLNWLDGRAHCVR-ILPESLRKNVPKG 494
K L FP +I ++ W D V ++ + + ++ +
Sbjct: 365 VLEPAEYRKMFDRLSVFP----PSAHIPTILLSLI-WFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 495 QNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPG 554
Q S+ + ++L + L++ + Y P
Sbjct: 420 QPKESTISI--------------PSI---YLELKVKLENEYALHR---SIVDHY--NIPK 457
Query: 555 YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDV-GDTAVI----- 608
+D+ D + Y Y + GH L + + V D +
Sbjct: 458 TFDSDDLIPPYLDQYFY---------SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 609 --GVPEPTKGEIPFCL--------YIKKRIPLDKMGFSGLIGFGKLERPTSLL-----TN 653
G I L YI P + + ++ F L + L T+
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF--LPKIEENLICSKYTD 566
Query: 654 PIRV-LIKPYGPI 665
+R+ L+ I
Sbjct: 567 LLRIALMAEDEAI 579
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 737 | |||
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.96 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 99.53 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 99.51 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 98.51 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 98.42 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 98.39 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 86.39 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 85.9 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 85.85 |
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-95 Score=844.83 Aligned_cols=621 Identities=34% Similarity=0.614 Sum_probs=517.4
Q ss_pred ccccccccccCChhHHHHHHHHHhhChhhHHHHHHhh-cccccCccccccCC---C-CCC--CCCCCCCchhHHHHHHhh
Q psy8076 13 SGNKINECTSNQNDKYYDAYRKSIEAPESFWTDVGNM-ATWSKKWDRILDNS---D-QPF--TKWFVGGEINACYNAIDR 85 (737)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~-~~~~~~~~~~l~~~---~-~~~--~~~~~~~~~n~~~~~l~~ 85 (737)
++.+|+......+++|.++++++++||+.||+++++. +.|.++++++++.. . .+. .+||+++.+|+++++|++
T Consensus 11 ~~~~~~~~~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~ 90 (663)
T 1ry2_A 11 SSGLVPRGSHMGLQDYQRLHKESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDR 90 (663)
T ss_dssp -------------CHHHHHHHHHHHCHHHHHHHHHHHHCCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHH
T ss_pred cccccccccCCChhhHHHHHHHHhcCHHHHHHHHHhhcCeeecCCceeecCccccccCCCCCCCcCCCCCccHHHHHHHH
Confidence 4566777777778899999999999999999999988 99999999999765 3 334 799999999999999999
Q ss_pred hhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEec
Q psy8076 86 HVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLA-AIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVV 164 (737)
Q Consensus 86 ~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~-~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl 164 (737)
+++++ ||++|+++.++..+..+++||+||+++++++|+.|+ ++|+++||+|+|+++|++|+++++|||+++|++++|+
T Consensus 91 ~a~~~-pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 91 HALKT-PNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVV 169 (663)
T ss_dssp HHTTC-TTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HhccC-CCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEee
Confidence 99987 999999997544445689999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHHHh
Q psy8076 165 FGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALA 244 (737)
Q Consensus 165 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~~ 244 (737)
++.++.+++.+++++++++++|+++.....++.++++..+.+++..++ .+++++++.........+.......|.++..
T Consensus 170 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (663)
T 1ry2_A 170 FAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETP-GVRHVLVYRKTNNPSVAFHAPRDLDWATEKK 248 (663)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCT-TCCEEEEECSSCCSSCCCCSSSEEEHHHHHT
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCC-CCceEEEEecCCCCccccCCCccccHHHHHh
Confidence 999999999999999999999999998888888888888888776665 5677887765321011122234566777765
Q ss_pred hcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccc
Q psy8076 245 QRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWV 323 (737)
Q Consensus 245 ~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 323 (737)
.... ....+..+++++||+||||||| +||||+++|++++......+...++++++|++++.+|++|+
T Consensus 249 ~~~~~~~~~~~~~~d~a~ilyTSGTTG------------~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 316 (663)
T 1ry2_A 249 KYKTYYPCTPVDSEDPLFLLYTSGSTG------------APKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWI 316 (663)
T ss_dssp TSCSCCCCCCEETTSCCEEEEECCSSS------------SCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSH
T ss_pred hcCCCCCccccCCCCceEEEeccCCCC------------CCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHh
Confidence 4332 3445678899999999999999 99999999999887776667777999999999999999999
Q ss_pred cchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeec
Q psy8076 324 VGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAG 403 (737)
Q Consensus 324 ~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gG 403 (737)
+|+.+.++.+|+.|++++++++.+. .+++..+++.|+++++|+++++|++++.|.+...... ...++++||.+++||
T Consensus 317 ~g~~~~~~~~L~~G~t~v~~~~~~~-~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~--~~~~l~sLr~i~~gG 393 (663)
T 1ry2_A 317 TGHTYVVYGPLLYGCATLVFEGTPA-YPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYI--ENHSLKSLRCLGSVG 393 (663)
T ss_dssp HHHHHTTHHHHHHTSEEEEECSCTT-SSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSS--SSCCCTTCCEEEECS
T ss_pred hhhHHHHHHHHHhCCEEEEECCCCC-CCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcccc--ccCCcCceEEEEEEc
Confidence 9987778999999999999987665 4789999999999999999999999999987654321 456789999999999
Q ss_pred CCCCHHHHHHHHHhcC---CcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccc
Q psy8076 404 EHCDHETKNWAEKSFN---VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCV 480 (737)
Q Consensus 404 e~l~~~~~~~~~~~~~---~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~ 480 (737)
|++++++++++.+.+| +++++.||+||+++.++..... ...+.++ +++|+|++|++ ++
T Consensus 394 e~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~-gs~G~p~~g~~-----v~------------ 454 (663)
T 1ry2_A 394 EPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAG-GVTPMKP-GSASFPFFGID-----AV------------ 454 (663)
T ss_dssp SCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTT-TCCCCCT-TCCCEECTTCC-----EE------------
T ss_pred CCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCC-CCcccCC-CccccCcCCCe-----EE------------
Confidence 9999999999999988 8999999999998766553220 1223445 78899999888 77
Q ss_pred cccccccccCCCCCCCCcccccceEEEEcC-CCCccCC-CcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeec
Q psy8076 481 RILPESLRKNVPKGQNATHFTSVEVRIIRN-DGSECEP-HELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDT 558 (737)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~-~g~~~~~-g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~T 558 (737)
|+|+ +|++++. |+.|||+|+||+| +++.|||++++++.+.|+...+|||+|
T Consensus 455 --------------------------i~d~~~g~~v~~~g~~Gel~i~g~~p-~~~~gy~~~~~~~~~~~~~~~~g~y~T 507 (663)
T 1ry2_A 455 --------------------------VLDPNTGEELNTSHAEGVLAVKAAWP-SFARTIWKNHDRYLDTYLNPYPGYYFT 507 (663)
T ss_dssp --------------------------EECSSSTTCEECSSCEEEEEESSCCT-TSCCEETTCHHHHHHHHTSSSTTSEEE
T ss_pred --------------------------EEcCCCCCcCCCCCcceEEEEecCCC-chhcccccChHHHHHhhhcCCCCEEEc
Confidence 9998 8999998 9999999999876 999999999999999998878999999
Q ss_pred CceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCcccc
Q psy8076 559 MDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGL 638 (737)
Q Consensus 559 GDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~ 638 (737)
||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||.|.+|+|++++++..++.++|||+++++....
T Consensus 508 GDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~------ 581 (663)
T 1ry2_A 508 GDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWS------ 581 (663)
T ss_dssp EEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------
T ss_pred CCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccc------
Confidence 99999999999999999999999999999999999999999999999999999988899999999987651000
Q ss_pred ccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHH
Q psy8076 639 IGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIV 718 (737)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~ 718 (737)
.. ......++.++|+++++++|++|++|+.|+++++||+|+|||++|++|+
T Consensus 582 -~~----------------------------~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~ 632 (663)
T 1ry2_A 582 -TA----------------------------TDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILR 632 (663)
T ss_dssp -----------------------------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHH
T ss_pred -cc----------------------------cchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHH
Confidence 00 0000013578999999999999999999999999999999999999999
Q ss_pred HHHcCC--CCCchhh
Q psy8076 719 DMARNK--PLRVRLV 731 (737)
Q Consensus 719 ~~~~~~--~~~~~~~ 731 (737)
+++.++ ++.+...
T Consensus 633 ~~~~~~~~~~~~~~~ 647 (663)
T 1ry2_A 633 KILAGESDQLGDVST 647 (663)
T ss_dssp HSCC-----------
T ss_pred HHHcCCCCCCCCccc
Confidence 999887 6655443
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-94 Score=840.03 Aligned_cols=600 Identities=33% Similarity=0.642 Sum_probs=520.6
Q ss_pred hhHHHHHHHHHhhChhhHHHHHHhhcccccCccccccCCC---CCCCCCCCCCchhHHHHHHhhhhhccCCCceEEEEeC
Q psy8076 25 NDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSD---QPFTKWFVGGEINACYNAIDRHVERGMAKKVALIHDS 101 (737)
Q Consensus 25 ~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~ 101 (737)
.++|.++++++++||+.||+++++.+.|.++++++++... .+..+||+++.+|+++++|+++++++ ||++|+++.+
T Consensus 21 ~~~y~~l~~~~~~~p~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a~~~-pd~~Al~~~~ 99 (652)
T 1pg4_A 21 PEQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQEN-GDRTAIIWEG 99 (652)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHGGGSCCSBCCSCCEEEECCTTCCEEEESTTCEECHHHHHTGGGHHHH-TTSEEEEEEC
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHhhCceecCCcccccCccccCCCCCEECCCCChhHHHHHHHHHhccC-CCceEEEEEc
Confidence 3589999999999999999999988999999999987554 56779999999999999999999998 9999999975
Q ss_pred CCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcC
Q psy8076 102 PVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAK 181 (737)
Q Consensus 102 ~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~ 181 (737)
+..+..+++||+||+++++++|++|+++|+++||+|+|+++|++|+++++|||+++|++++|+++.++.+++.+++++++
T Consensus 100 ~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~ 179 (652)
T 1pg4_A 100 DDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSS 179 (652)
T ss_dssp SSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcC
Confidence 44455689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCcccCCccccchHHHHHHHHhcC-CCCCeEEEEecccccccccCCCCcccHHHHHhhcCC-CCCccccCCCC
Q psy8076 182 PKVIIAASCGVEPNKVVRYKTILNEALEISS-CKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLS-HRCVPVEANDP 259 (737)
Q Consensus 182 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 259 (737)
++++|+++.....++.+++...+.+++...+ ..+++++++..... ...+.......|.++...... .......++++
T Consensus 180 ~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 258 (652)
T 1pg4_A 180 SRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS-DIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDP 258 (652)
T ss_dssp CSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCC-CCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSE
T ss_pred CCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCC-cccccCCCceeHHHHHhhcCCCCCccccCCCCC
Confidence 9999999988888888888888887776543 24567777754311 111222334667777654332 33445678999
Q ss_pred eEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccccchhhhhhhccccCcE
Q psy8076 260 LYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGIT 339 (737)
Q Consensus 260 a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~ 339 (737)
+||+||||||| +||||+++|++++......+...++++++|++++++|++|++|+.+.++.+|+.|++
T Consensus 259 a~ilyTSGTTG------------~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t 326 (652)
T 1pg4_A 259 LFILYTSGSTG------------KPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGAT 326 (652)
T ss_dssp EEEEEECCSSS------------SCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCE
T ss_pred EEEEeccCCCC------------CCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCce
Confidence 99999999999 999999999998877766667778999999999999999999987778999999999
Q ss_pred EEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcC
Q psy8076 340 SVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFN 419 (737)
Q Consensus 340 ~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~ 419 (737)
++++++.+. .+++..+++.|+++++|+++++|++++.|.+...... ...++++||.+++|||++++++++++.+.+|
T Consensus 327 ~vl~~~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g 403 (652)
T 1pg4_A 327 TLMFEGVPN-WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI--EGTDRSSLRILGSVGEPINPEAWEWYWKKIG 403 (652)
T ss_dssp EEEECSCTT-SSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGT--TTCCCTTCCEEEEESSCCCHHHHHHHHHHTT
T ss_pred EEEECCCCC-CCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcccc--ccCCcCceEEEEEecCCCCHHHHHHHHHHhC
Confidence 999987654 4789999999999999999999999999987653211 4457899999999999999999999999988
Q ss_pred ---CcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCCC
Q psy8076 420 ---VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQN 496 (737)
Q Consensus 420 ---~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (737)
++++|.||+||+++.++.... .....++ +++|+|++|++ ++
T Consensus 404 ~~~~~i~~~YG~TE~~~~~~~~~~--~~~~~~~-~s~G~p~~g~~-----v~---------------------------- 447 (652)
T 1pg4_A 404 KEKCPVVDTWWQTETGGFMITPLP--GAIELKA-GSATRPFFGVQ-----PA---------------------------- 447 (652)
T ss_dssp TTCSCEEEEBCCGGGSSCSBCCCT--TTCCBCT-TCCBSBCTTCC-----EE----------------------------
T ss_pred CCCCcEEccccCcccccceecCCC--CCcCccC-CccccCcCCCe-----EE----------------------------
Confidence 899999999999976655432 1223445 78999999988 87
Q ss_pred CcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeec
Q psy8076 497 ATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARD 576 (737)
Q Consensus 497 ~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~ 576 (737)
|+|++|++++.|+.|||+|+||+| ++++|||++++++.+.|+...+|||+|||+|++|+||+|+|+||+
T Consensus 448 ----------i~d~~g~~v~~g~~GEl~i~g~~p-~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~ 516 (652)
T 1pg4_A 448 ----------LVDNEGHPQEGATEGNLVITDSWP-GQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRV 516 (652)
T ss_dssp ----------EECTTCCBCCSSEEEEEEECSCCT-TCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEES
T ss_pred ----------EECCCCCCcCCCceEEEEEccCCC-chhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecC
Confidence 999999999999999999999765 999999999999999998877899999999999999999999999
Q ss_pred CCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccc
Q psy8076 577 DDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIR 656 (737)
Q Consensus 577 dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (737)
||+||++|+||+|.|||++|.+||.|.+|+|++++++..++.++|||+++++ .
T Consensus 517 dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~------------~--------------- 569 (652)
T 1pg4_A 517 DDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHG------------E--------------- 569 (652)
T ss_dssp SSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTT------------C---------------
T ss_pred CCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCC------------C---------------
Confidence 9999999999999999999999999999999999998889999999999875 1
Q ss_pred cccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHHHcCC--CCCchh
Q psy8076 657 VLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNK--PLRVRL 730 (737)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~~--~~~~~~ 730 (737)
...+++.++|+++|+++|+.|++|+.++++++||+|+|||++|++|++++.++ ++.+..
T Consensus 570 ---------------~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~ 630 (652)
T 1pg4_A 570 ---------------EPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTS 630 (652)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC--------
T ss_pred ---------------CCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCCCCCCCCcc
Confidence 12345678999999999999999999999999999999999999999999987 655443
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-80 Score=711.29 Aligned_cols=525 Identities=25% Similarity=0.353 Sum_probs=425.4
Q ss_pred CCCCCCchhHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHH
Q psy8076 69 KWFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAI 148 (737)
Q Consensus 69 ~~~~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~v 148 (737)
+|.....+|+++++|+++++++ ||++|+++.++ .+..+++||+||.++++++|++|+++|+++||+|+|+++|+++++
T Consensus 48 ~~~~~~~~n~~~~~l~~~a~~~-pd~~Al~~~~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~ 125 (580)
T 3etc_A 48 KILVPENFNFAYDVVDVYARDS-PEKLAMIWCDD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW 125 (580)
T ss_dssp CBCCCSSCCHHHHTHHHHHHHC-TTCEEEEEEES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHH
T ss_pred CCCCcccchHHHHHHHHHHhhC-CCCEEEEEEcC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Confidence 4555567889999999999998 99999998642 345689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccc
Q psy8076 149 VSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEE 228 (737)
Q Consensus 149 va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~ 228 (737)
+++|||+++|++++|+++.++.+++.+++++++++++|++.... ....+.++...++.....++.+...
T Consensus 126 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~---- 194 (580)
T 3etc_A 126 YCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD-------VPEQVDEAHAECGDIPLKKAKVGGD---- 194 (580)
T ss_dssp HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT-------HHHHHHHHHHHHCSCCCEEEEESSS----
T ss_pred HHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh-------HHHHHHHHhhhCCCcceEEEEeCCc----
Confidence 99999999999999999999999999999999999999987531 2245555555555232455555432
Q ss_pred cccCCCCcccHHHHHhhcCC-CC-C---ccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHh
Q psy8076 229 AELTPGYDILWDDALAQRLS-HR-C---VPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMS 303 (737)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~-~~-~---~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~ 303 (737)
.......+.+....... .. . ....+++++||+||||||| .||||+++|.+.+..... ..
T Consensus 195 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~~~~~~~~~~~~-~~ 258 (580)
T 3etc_A 195 ---VLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAG------------FPKMVEHDNTYPLGHILT-AK 258 (580)
T ss_dssp ---CCTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSS------------SCEEEEEETTHHHHHHHH-HH
T ss_pred ---cccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCC------------CccEEEeccHHHHHHHHH-HH
Confidence 11223455555544333 11 1 2467899999999999999 999999999876554443 44
Q ss_pred hhhcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCC
Q psy8076 304 VIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDK 383 (737)
Q Consensus 304 ~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~ 383 (737)
..+++.+++++++.++++|..+....++.++..|+++++.+.. .+++..+++.|+++++|+++++|++++.|.+...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 335 (580)
T 3etc_A 259 YWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYD---RFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL 335 (580)
T ss_dssp TTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECS---SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC
T ss_pred HhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCC---CCCHHHHHHHHHHHCCeEEEccHHHHHHHHhccc
Confidence 4578899999999999999988666688999999999998632 4799999999999999999999999999987532
Q ss_pred CCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCC
Q psy8076 384 DSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGK 463 (737)
Q Consensus 384 ~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~ 463 (737)
...++++||.+++|||++++++.++|.+.+|++++|.||+||+++.++... ....++ +++|+|++|++
T Consensus 336 -----~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~----~~~~~~-~~~G~p~~~~~-- 403 (580)
T 3etc_A 336 -----SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFP----WMEPKP-GSIGKPTPGYK-- 403 (580)
T ss_dssp --------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCT----TSCCCT-TCCBEECTTCE--
T ss_pred -----ccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCC----CCCCCC-CccccCCCCCE--
Confidence 455789999999999999999999999999999999999999986655432 223344 78999999988
Q ss_pred cceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecC--CCCCcccccccCh
Q psy8076 464 YVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLP--LPPGTMSTLYKAP 541 (737)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~--~~~~~~~gy~~~~ 541 (737)
++ |+|++|++||+|+.|||+|+|+ .|++++.|||+++
T Consensus 404 ---v~--------------------------------------ivd~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p 442 (580)
T 3etc_A 404 ---IE--------------------------------------LMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDP 442 (580)
T ss_dssp ---EE--------------------------------------EECTTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCH
T ss_pred ---EE--------------------------------------EECCCCCCCCCCCceEEEEecCCCCCCeeeccccCCH
Confidence 77 9999999999999999999972 1238999999999
Q ss_pred hhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEE
Q psy8076 542 QRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFC 621 (737)
Q Consensus 542 ~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a 621 (737)
+.+.+.|. +|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++++++..++.++|
T Consensus 443 ~~t~~~f~---~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a 519 (580)
T 3etc_A 443 ERTEETWH---DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKA 519 (580)
T ss_dssp HHHHHHEE---TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEE
T ss_pred hHHHhhcC---CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEE
Confidence 99998873 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEc
Q psy8076 622 LYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSV 701 (737)
Q Consensus 622 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v 701 (737)
+|+++++ . ...+.+.++|+++++++|+.|++|+.++++
T Consensus 520 ~vv~~~~------------~------------------------------~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v 557 (580)
T 3etc_A 520 TIVLTKD------------Y------------------------------TPSDSLKNELQDHVKNVTAPYKYPRIIEFV 557 (580)
T ss_dssp EEEECTT------------C------------------------------CCCHHHHHHHHHHHHHHSCGGGCCSEEEEE
T ss_pred EEEECCC------------C------------------------------CCCHHHHHHHHHHHHhhCCCccCCeEEEEe
Confidence 9999876 2 123567889999999999999999999999
Q ss_pred CCCCCCCCchhhHHHHHHHHcC
Q psy8076 702 TGLPRTRSGKTARKSIVDMARN 723 (737)
Q Consensus 702 ~~lP~t~sGKi~R~~l~~~~~~ 723 (737)
++||+|+|||++|++|++++.+
T Consensus 558 ~~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 558 PELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp CC--------------------
T ss_pred CCCCCCCCcCCcHHHHHhHhhc
Confidence 9999999999999999998764
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-79 Score=693.99 Aligned_cols=506 Identities=19% Similarity=0.299 Sum_probs=427.1
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|.++++++ ||++|+++... .+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 23 ~l~~~l~~~a~~~-p~~~a~~~~~~----~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~ 97 (536)
T 3ni2_A 23 PLHSYVLENLSNH-SSKPCLINGAN----GDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHR 97 (536)
T ss_dssp CHHHHHTTTGGGS-TTSEEEEETTT----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhcC-CCceEEEECCC----CCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHh
Confidence 4789999999998 99999998631 278999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|++|.++.+++.+++++++++++|++... ...+.+...... ..+++++.. .....
T Consensus 98 Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~---------~~~~~~~~~~~~---~~~~~~~~~--------~~~~~ 157 (536)
T 3ni2_A 98 GAIITAANPFSTPAELAKHAKASRAKLLITQACY---------YEKVKDFARESD---VKVMCVDSA--------PDGCL 157 (536)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGG---------THHHHHHHHHHT---CEEEESSCC--------CTTCE
T ss_pred CCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHH---------HHHHHHHHhhcC---ceEEEecCC--------CCCcc
Confidence 9999999999999999999999999999998753 233333332221 133333221 11234
Q ss_pred cHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHh---hhhcCCCCcE
Q psy8076 238 LWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMS---VIYNMGQDDV 313 (737)
Q Consensus 238 ~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~---~~~~~~~~d~ 313 (737)
.+.++...... .+.....+++++||+||||||| .||||+++|++++........ ..+++.++|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~ 225 (536)
T 3ni2_A 158 HFSELTQADENEAPQVDISPDDVVALPYSSGTTG------------LPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDV 225 (536)
T ss_dssp ETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSS------------SCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCC
T ss_pred CHHHHhhccccccccCCCCccCEEEEEcCCCccc------------cchHHHhhHHHHHHHHHHHHhhccccccCCCCCE
Confidence 45555443222 2334567899999999999999 999999999987776655332 1356889999
Q ss_pred EEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCC
Q psy8076 314 WWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYST 393 (737)
Q Consensus 314 ~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l 393 (737)
+++.+|++|++++...++.+|..|+++++.+. .++..+++.|+++++|++.++|+++..|.+.... ...++
T Consensus 226 ~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~l 296 (536)
T 3ni2_A 226 ILCVLPMFHIYALNSIMLCGLRVGAPILIMPK-----FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDL----DKHDL 296 (536)
T ss_dssp EEECSCTTSHHHHHHTHHHHHHHTCCEEECSS-----CCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCG----GGSCC
T ss_pred EEEecChHHHHHHHHHHHHHHhcCCEEEEcCC-----CCHHHHHHHHHHhCCeEEEccHHHHHHHHhCccc----ccCCC
Confidence 99999999999987778899999999999863 6899999999999999999999999999887543 45578
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccc-cCCCCCCCCCCccCCCcCCCCCCcceeeeec
Q psy8076 394 DSLRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCL-GYQHDTVPPKYSTGLPFPGYDGKYVNIVMLN 471 (737)
Q Consensus 394 ~~Lr~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~-~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~ 471 (737)
++||.+++|||++++++.+++.+.+ +..++|.||+||+++.++.... .......++ +++|+|+++++ ++
T Consensus 297 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~-~~~G~~~~~~~-----~~--- 367 (536)
T 3ni2_A 297 SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKP-GACGTVVRNAE-----MK--- 367 (536)
T ss_dssp TTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCT-TCCCEECSSCE-----EE---
T ss_pred ccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCC-CCeeEeCCCcE-----EE---
Confidence 9999999999999999999999998 7899999999999976554321 112223344 77888888887 77
Q ss_pred cccCccccccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhcc
Q psy8076 472 WLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFT 550 (737)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~ 550 (737)
|+| ++|+++|.|+.|||+|+|| +++.|||++++.+.+.|.
T Consensus 368 -----------------------------------i~d~~~~~~~~~g~~GEl~v~g~---~v~~GY~~~p~~t~~~~~- 408 (536)
T 3ni2_A 368 -----------------------------------IVDPETGASLPRNQPGEICIRGD---QIMKGYLNDPEATSRTID- 408 (536)
T ss_dssp -----------------------------------EECTTTCCBCCTTCCEEEEEEST---TSCSEETTCHHHHHHHBC-
T ss_pred -----------------------------------EEeCCCCcCCCCCCccEEEEeCc---ccchhhcCChhHHHhhcc-
Confidence 999 6799999999999999999 999999999999988763
Q ss_pred CCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCC
Q psy8076 551 KFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPL 630 (737)
Q Consensus 551 ~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~ 630 (737)
.+|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+|+|++++++..++.++|+|+..+.
T Consensus 409 -~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~-- 485 (536)
T 3ni2_A 409 -KEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEK-- 485 (536)
T ss_dssp -TTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT--
T ss_pred -CCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCC--
Confidence 37999999999999999999999999999999999999999999999999999999999999899999999998765
Q ss_pred CcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCc
Q psy8076 631 DKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSG 710 (737)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sG 710 (737)
. ....++|+++++++|+.|++|+.++++++||+|++|
T Consensus 486 ----------~---------------------------------~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~G 522 (536)
T 3ni2_A 486 ----------S---------------------------------QATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSG 522 (536)
T ss_dssp ----------C---------------------------------CCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTS
T ss_pred ----------C---------------------------------CCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCC
Confidence 1 112578999999999999999999999999999999
Q ss_pred hhhHHHHHHHHcC
Q psy8076 711 KTARKSIVDMARN 723 (737)
Q Consensus 711 Ki~R~~l~~~~~~ 723 (737)
|++|++|++++.+
T Consensus 523 Ki~R~~L~~~~~~ 535 (536)
T 3ni2_A 523 KILRKNLKEKLAG 535 (536)
T ss_dssp CBCHHHHHTC---
T ss_pred CeeHHHHHHHhcc
Confidence 9999999998753
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-78 Score=690.45 Aligned_cols=522 Identities=23% Similarity=0.322 Sum_probs=440.8
Q ss_pred CCCCCCCchhHHHHHHhhhhhc-----cCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEe
Q psy8076 68 TKWFVGGEINACYNAIDRHVER-----GMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAI-GVSAGDRVLIYM 141 (737)
Q Consensus 68 ~~~~~~~~~n~~~~~l~~~~~~-----~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~-Gv~~Gd~V~i~~ 141 (737)
..|+.....|++.++|++++++ + ||++|+++.+. .+..+++||+||+++++++|++|.+. |+++||+|+|++
T Consensus 29 ~~~~~~~~~~~~~~~l~~~a~~~~a~~~-p~~~al~~~~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~ 106 (570)
T 3c5e_A 29 GHQEVPAKFNFASDVLDHWADMEKAGKR-PPSPALWWVNG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVL 106 (570)
T ss_dssp CBCCCCSBCCHHHHTHHHHHHHHHTTSS-CCCEEEEEECS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEEC
T ss_pred ccccCCccccHHHHHHHHHHhhccccCC-CCceEEEEEcC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEc
Confidence 3677777888999999999988 8 99999998642 22358999999999999999999999 999999999999
Q ss_pred cCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEE
Q psy8076 142 PLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIF 221 (737)
Q Consensus 142 ~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~ 221 (737)
+|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.. ...+......++ .++.++++
T Consensus 107 ~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~-~~~~~~~~ 176 (570)
T 3c5e_A 107 PRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEV---------IQEVDTVASECP-SLRIKLLV 176 (570)
T ss_dssp CSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTT---------HHHHHHHGGGCT-TCCEEEEE
T ss_pred CCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHH---------HHHHHHHhhcCC-ceeEEEEe
Confidence 99999999999999999999999999999999999999999999998752 333444444444 45556655
Q ss_pred ecccccccccCCCCcccHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHH-HH
Q psy8076 222 QRRCVEEAELTPGYDILWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIAT-LA 299 (737)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~-~~ 299 (737)
.... ......+.++...... .......+++++||+||||||| .||||+++|+ .+.. ..
T Consensus 177 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~sh~-~~~~~~~ 236 (570)
T 3c5e_A 177 SEKS-------CDGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSG------------LPKMAEHSYS-SLGLKAK 236 (570)
T ss_dssp SSSC-------CTTSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSS------------SCCEEEEEHH-HHHHHHH
T ss_pred cccC-------ccccccHHHHhhcccccccccCCCCCCcEEEEECCCCCC------------CCCEEEechH-HHHhhhh
Confidence 4310 1112345555543332 2234467899999999999999 9999999997 5542 23
Q ss_pred HHHhhhhcCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHH
Q psy8076 300 WTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIR 379 (737)
Q Consensus 300 ~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~ 379 (737)
... ..++++++|++++.+|++|+.++...++.+|..|+++++.+.. .+++..+++.|+++++|+++++|++++.|.
T Consensus 237 ~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 312 (570)
T 3c5e_A 237 MDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLP---KFDPLVILKTLSSYPIKSMMGAPIVYRMLL 312 (570)
T ss_dssp HHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCS---SCCHHHHHHHHHHSCCCEEEECHHHHHHHH
T ss_pred hhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCC---CCCHHHHHHHHHHhCCeEEeccHHHHHHHH
Confidence 223 5678899999999999999999766788999999999998742 368999999999999999999999999998
Q ss_pred HcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCC
Q psy8076 380 REDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPG 459 (737)
Q Consensus 380 ~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g 459 (737)
+... ...++++||.+++|||++++++.++|.+.++++++|.||+||++..++... .....+ +++|+|+++
T Consensus 313 ~~~~-----~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~----~~~~~~-~~vG~p~~~ 382 (570)
T 3c5e_A 313 QQDL-----SSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSK----TMKIKP-GYMGTAASC 382 (570)
T ss_dssp TSCT-----TTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCT----TSCCCT-TCCCEECTT
T ss_pred hccc-----cccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCc----ccccCC-CcccccCCC
Confidence 7632 344688999999999999999999999989999999999999986554321 122344 789999999
Q ss_pred CCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEe-----cCCCCCcc
Q psy8076 460 YDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVK-----LPLPPGTM 534 (737)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~-----g~~~~~~~ 534 (737)
++ ++ |+|++|+++|.|+.|||+|+ || +++
T Consensus 383 ~~-----v~--------------------------------------i~d~~g~~~~~G~~GEl~v~~~~~~g~---~v~ 416 (570)
T 3c5e_A 383 YD-----VQ--------------------------------------IIDDKGNVLPPGTEGDIGIRVKPIRPI---GIF 416 (570)
T ss_dssp CC-----EE--------------------------------------EECTTSCBCCTTCCEEEEEECSSBCCT---TCC
T ss_pred ce-----EE--------------------------------------EECCCCCCCCCCCCCeeEEeccCCCCc---hhh
Confidence 88 87 99999999999999999999 87 999
Q ss_pred cccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCC
Q psy8076 535 STLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPT 614 (737)
Q Consensus 535 ~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~ 614 (737)
.|||++++.+.+.|. +|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+++.
T Consensus 417 ~GY~~~~~~t~~~f~---~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~ 493 (570)
T 3c5e_A 417 SGYVDNPDKTAANIR---GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPV 493 (570)
T ss_dssp CEETTCHHHHHHTEE---TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETT
T ss_pred ccccCChhHhhhhhc---CCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCC
Confidence 999999999988763 78999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCcceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCcee
Q psy8076 615 KGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAA 694 (737)
Q Consensus 615 ~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 694 (737)
.++.++|+|++.++ .. ....+.+.++|+++++++|+.|++
T Consensus 494 ~g~~~~a~vv~~~~------------~~----------------------------~~~~~~~~~~l~~~l~~~L~~~~~ 533 (570)
T 3c5e_A 494 RGEVVKAFVVLASQ------------FL----------------------------SHDPEQLTKELQQHVKSVTAPYKY 533 (570)
T ss_dssp TEEEEEEEEEECGG------------GT----------------------------TSCHHHHHHHHHHHHHHHSCGGGS
T ss_pred CCeEEEEEEEECCc------------cc----------------------------CcchHHHHHHHHHHHHhhCccccC
Confidence 88999999998764 10 012345678999999999999999
Q ss_pred eeeEEEcCCCCCCCCchhhHHHHHHHHcCC
Q psy8076 695 FKLSTSVTGLPRTRSGKTARKSIVDMARNK 724 (737)
Q Consensus 695 p~~~~~v~~lP~t~sGKi~R~~l~~~~~~~ 724 (737)
|+.++++++||+|++||++|++|++.+...
T Consensus 534 P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 563 (570)
T 3c5e_A 534 PRKIEFVLNLPKTVTGKIQRAKLRDKEWKM 563 (570)
T ss_dssp CSEEEEESCCCBCTTCCBCHHHHHHHHTC-
T ss_pred CcEEEEeccCCCCCCcCCcHHHHHHHHHhh
Confidence 999999999999999999999999988643
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-80 Score=769.01 Aligned_cols=557 Identities=17% Similarity=0.242 Sum_probs=463.0
Q ss_pred ceeeeeeecccccccccccCC-hhHHHHHHHHHhhChhhHHHHHHhhcccccCccccccCCCCCCCCCCCCCchhHHHHH
Q psy8076 4 FKCDISLDFSGNKINECTSNQ-NDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNA 82 (737)
Q Consensus 4 ~~~~~~~~y~~~~~~~~~~~~-~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~ 82 (737)
.++.+.++|++++|++.++++ +++|.+++++++++|+..++++ ..+... +..+++..++.+...+ +. .+++++
T Consensus 396 ~~l~~~~~y~~~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~~-~~l~~~-e~~~~~~~~~~~~~~~-~~---~~l~~~ 469 (1304)
T 2vsq_A 396 DEMLIKLAYNENVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTI-NLVDDR-EREFLLTGLNPPAQAH-ET---KPLTYW 469 (1304)
T ss_dssp SSCEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHSTTSBGGGC-CCCCHH-HHHHHHTTTSCCCCCC-CC---CCHHHH
T ss_pred CcEEEEEEECCccCCHHHHHHHHHHHHHHHHHhccCcccccccc-CCCCHH-HHHHHHHhcCCCCCCC-CC---CCHHHH
Confidence 357789999999999999999 6689999999999999977765 222222 2234566666543332 22 257899
Q ss_pred HhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEE
Q psy8076 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHS 162 (737)
Q Consensus 83 l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~v 162 (737)
|+++++++ ||++|+++.+ +++||+||+++++++|++|+++|+++|++|+|+++|++++++++|||+++|++||
T Consensus 470 ~~~~~~~~-p~~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~v 542 (1304)
T 2vsq_A 470 FKEAVNAN-PDAPALTYSG------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYL 542 (1304)
T ss_dssp HHHHHHHC-TTSEEEESSS------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhC-CCCeEEEECC------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEE
Confidence 99999998 9999999876 8999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHH
Q psy8076 163 VVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDA 242 (737)
Q Consensus 163 pl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~ 242 (737)
||+|.+|.+++.++++++++++++++........ .++ .....+++... . .
T Consensus 543 pldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~-------------~~~-~~~~~~~~~~~------------~---~- 592 (1304)
T 2vsq_A 543 PVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA-------------ELP-YTGTTLFIDDQ------------T---R- 592 (1304)
T ss_dssp ECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST-------------TCC-CCSEEEESSCG------------G---G-
T ss_pred EECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh-------------ccC-CCCcEEEeccc------------c---c-
Confidence 9999999999999999999999999876432111 011 11222222111 0 0
Q ss_pred HhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEeccccc
Q psy8076 243 LAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGW 322 (737)
Q Consensus 243 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 322 (737)
.............++++|||+||||||| +||||+++|+++.+. .+ +...++++++|++++.++++|
T Consensus 593 ~~~~~~~~~~~~~~~~~ayiiyTSGSTG------------~PKgV~~~h~~l~~~-~~-~~~~~~~~~~d~~l~~~~~~f 658 (1304)
T 2vsq_A 593 FEEQASDPATAIDPNDPAYIMYTSGTTG------------KPKGNITTHANIQGL-VK-HVDYMAFSDQDTFLSVSNYAF 658 (1304)
T ss_dssp GGSCSSCCCCCCCTTSEEEEEEECCSSS------------SCEEEEEEHHHHHHH-HS-SCCSSCCCTTCEEEECSCTTS
T ss_pred cccccCCCCCCCCCCCeEEEEeCCCCCC------------CCCEEEEehHHHHHH-HH-HHHhcCCCCCCEEEEECCccH
Confidence 0011111223467899999999999999 999999999886543 33 445678899999999999999
Q ss_pred ccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEee
Q psy8076 323 VVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVA 402 (737)
Q Consensus 323 ~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~g 402 (737)
+.+ .++++.+|+.|+++++.+... ..++..+++.|+++++|+++++|++++.|...... .+++||.+++|
T Consensus 659 d~~-~~~~~~~l~~G~~l~~~~~~~--~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~-------~~~~lr~~~~g 728 (1304)
T 2vsq_A 659 DAF-TFDFYASMLNAARLIIADEHT--LLDTERLTDLILQENVNVMFATTALFNLLTDAGED-------WMKGLRCILFG 728 (1304)
T ss_dssp THH-HHHHHHHHTTTCEEEECCGGG--TTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH-------HHHTCSEEEEE
T ss_pred HHH-HHHHHHHHHcCCEEEECChhh--cCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh-------cCCCccEEEEe
Confidence 988 567999999999999987543 37899999999999999999999999999875321 35789999999
Q ss_pred cCCCCHHHHHHHHHhcC-CcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcccccc
Q psy8076 403 GEHCDHETKNWAEKSFN-VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVR 481 (737)
Q Consensus 403 Ge~l~~~~~~~~~~~~~-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~ 481 (737)
||++++++.++|.+.++ ..++|.||+||+++.++............. .++|+|++|+. ++
T Consensus 729 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~-~~iG~p~~~~~-----~~------------- 789 (1304)
T 2vsq_A 729 GERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISS-LPIGKPISNAS-----VY------------- 789 (1304)
T ss_dssp SSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSS-CCCBEECTTEE-----EE-------------
T ss_pred cCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCC-CCCceeeCCCE-----EE-------------
Confidence 99999999999988875 689999999999987776544211122233 67899998888 77
Q ss_pred ccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccC----CCCeee
Q psy8076 482 ILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTK----FPGYYD 557 (737)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~----~~g~~~ 557 (737)
|+|++++++|.|+.|||+|+|+ ++++||+|+++.|.+.|..+ .++|||
T Consensus 790 -------------------------i~d~~~~~~p~G~~GEl~i~G~---~v~~GY~~~p~~T~~~f~~~p~~~g~~~yr 841 (1304)
T 2vsq_A 790 -------------------------ILNEQSQLQPFGAVGELCISGM---GVSKGYVNRADLTKEKFIENPFKPGETLYR 841 (1304)
T ss_dssp -------------------------EECTTSCBCCTTCCEEEEEEET---TCCCCBTTCHHHHHHHEEECTTSTTCEEEE
T ss_pred -------------------------EECCCcCCCCCCCceEEEEecc---ccCccccCCcccchhhhccCCCCCCCeeEe
Confidence 9999999999999999999999 99999999999999988643 345999
Q ss_pred cCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccc
Q psy8076 558 TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSG 637 (737)
Q Consensus 558 TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~ 637 (737)
|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|.+|+|++.+++.+++.++||++....
T Consensus 842 TGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~--------- 912 (1304)
T 2vsq_A 842 TGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQ--------- 912 (1304)
T ss_dssp EEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSS---------
T ss_pred cCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCC---------
Confidence 99999999999999999999999999999999999999999999999999999888888899999987543
Q ss_pred cccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHH
Q psy8076 638 LIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSI 717 (737)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l 717 (737)
. ..++|+++++++||.||+|..++++++||+|+|||+||++|
T Consensus 913 ---~-----------------------------------~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L 954 (1304)
T 2vsq_A 913 ---L-----------------------------------SAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLL 954 (1304)
T ss_dssp ---S-----------------------------------CHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCC
T ss_pred ---C-----------------------------------CHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhc
Confidence 1 14679999999999999999999999999999999999999
Q ss_pred HHHH
Q psy8076 718 VDMA 721 (737)
Q Consensus 718 ~~~~ 721 (737)
++..
T Consensus 955 ~~~~ 958 (1304)
T 2vsq_A 955 PKPD 958 (1304)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 7643
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-79 Score=697.86 Aligned_cols=511 Identities=22% Similarity=0.269 Sum_probs=393.2
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCC--CCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHH
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPV--TKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATV 155 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~--~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~ 155 (737)
++.++|+++++++ ||++|+++.+.. .+..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+
T Consensus 20 ~l~~~l~~~a~~~-p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 98 (549)
T 3g7s_A 20 SLADRIDAAAEKF-GEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALW 98 (549)
T ss_dssp CTTHHHHHHHHHH-TTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhC-CCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 3678999999998 999999988621 2334899999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCC
Q psy8076 156 RLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGY 235 (737)
Q Consensus 156 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~ 235 (737)
++|+++||++|.++.+++.+++++++++++|++.. +...+.......+ ...+++... .
T Consensus 99 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~---------~~~~~~~~~~~~~--~~~~~~~~~-----------~ 156 (549)
T 3g7s_A 99 RVAATPVPINPMYKSFELEHILNDSEATTLVVHSM---------LYENFKPVLEKTG--VERVFVVGG-----------E 156 (549)
T ss_dssp HTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGG---------GHHHHHHHHTTSC--CCEEEEETC-----------S
T ss_pred HhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChH---------HHHHHHHHHhhCC--CcEEEEeCC-----------C
Confidence 99999999999999999999999999999999875 2344444444332 445555432 2
Q ss_pred cccHHHHHhhcCC-CCCccccC-CCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcE
Q psy8076 236 DILWDDALAQRLS-HRCVPVEA-NDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDV 313 (737)
Q Consensus 236 ~~~~~~~~~~~~~-~~~~~~~~-~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~ 313 (737)
...+.+....... .......+ ++++||+||||||| .||||+++|++++....+ +...+++.++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~sh~~l~~~~~~-~~~~~~~~~~d~ 223 (549)
T 3g7s_A 157 VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTG------------MPKGVMLTHFNLAANALQ-LAVATGLSHMDT 223 (549)
T ss_dssp SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-------------CEEEEEEHHHHHHHHHH-HHHHHCCCTTCE
T ss_pred CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccC------------CCceEEEcHHHHHHHHHH-HHHHcCCCCCCE
Confidence 3345555544332 22223344 89999999999999 999999999887666554 455689999999
Q ss_pred EEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCC
Q psy8076 314 WWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYST 393 (737)
Q Consensus 314 ~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l 393 (737)
+++.+|++|+.++.. ++.++..|+++++.+ .+++..+++.|+++++|+++++|++++.|.+...... ...++
T Consensus 224 ~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~-----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~ 295 (549)
T 3g7s_A 224 IVGCMPMFHSAEFGL-VNLMVTVGNEYVVMG-----MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSN--KTYDW 295 (549)
T ss_dssp EECCSCTTSHHHHHH-HTTHHHHCCEEEEES-----SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSC--CCCCC
T ss_pred EEEeCcHHHHHHHHH-HHHHHhcCceEEEcC-----CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhc--ccCCc
Confidence 999999999998766 788999999999987 3799999999999999999999999999987643221 23578
Q ss_pred CCccEEEeecCCCCHHHHHHHHHh----cC---CcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcce
Q psy8076 394 DSLRYLFVAGEHCDHETKNWAEKS----FN---VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVN 466 (737)
Q Consensus 394 ~~Lr~i~~gGe~l~~~~~~~~~~~----~~---~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~ 466 (737)
++||.+++||+++++++.+++.+. ++ ..++|.||+||+++.++.... ...... .++|+|+++++
T Consensus 296 ~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~---~~~~~~-~~~G~p~~~~~----- 366 (549)
T 3g7s_A 296 SYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP---LRLDKS-TTQGVPMSDIE----- 366 (549)
T ss_dssp TTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCG---GGGGGT-TSCCEECTTCE-----
T ss_pred cceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCc---cccCcC-CCccccCCCCE-----
Confidence 999999999999999999999887 66 789999999999977665432 112233 68889988888
Q ss_pred eeeeccccCccccccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhhhH
Q psy8076 467 IVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFM 545 (737)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~ 545 (737)
++ |+| ++|++++.|+.|||+|+|| +++.|||++++.+.
T Consensus 367 ~~--------------------------------------i~d~~~g~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~ 405 (549)
T 3g7s_A 367 LK--------------------------------------VISLEDGRELGVGESGEIVIRGP---NIFKGYWKREKENQ 405 (549)
T ss_dssp EE--------------------------------------EECSSSCCEECTTCCEEEEEEST---TSCSEETTCTTGGG
T ss_pred EE--------------------------------------EEeCCCCcCCCCCCceEEEEECc---chhhhhCCChhhhh
Confidence 77 999 8899999999999999999 99999999999999
Q ss_pred HhhccCCCC--eeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEE
Q psy8076 546 KIYFTKFPG--YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLY 623 (737)
Q Consensus 546 ~~~~~~~~g--~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v 623 (737)
+.|+.+.+| ||+|||+|++|+||+|+|+||.||+||++|+||+|.|||++|.+||+|.+|+|++++++..++.++|+|
T Consensus 406 ~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~v 485 (549)
T 3g7s_A 406 ECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFI 485 (549)
T ss_dssp TSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEE
T ss_pred hhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEE
Confidence 988655567 999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCC
Q psy8076 624 IKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTG 703 (737)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~ 703 (737)
+++++ . ......++|+++++++|+.|++|+.++++++
T Consensus 486 v~~~~------------~-------------------------------~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~ 522 (549)
T 3g7s_A 486 VLKPE------------Y-------------------------------RGKVDEEDIIEWVRERISGYKRVREVEFVEE 522 (549)
T ss_dssp EECST------------T-------------------------------TTSCCHHHHHHHHHTTCC-----CCCCEEEE
T ss_pred EECCC------------c-------------------------------cCcCCHHHHHHHHHHhccCcccceEEEEecc
Confidence 98765 1 0112357899999999999999999999999
Q ss_pred CCCCCCchhhHHHHHHHHcCCC
Q psy8076 704 LPRTRSGKTARKSIVDMARNKP 725 (737)
Q Consensus 704 lP~t~sGKi~R~~l~~~~~~~~ 725 (737)
||+|+|||++|++|++++..+.
T Consensus 523 lP~t~~GKi~R~~L~~~~~~~~ 544 (549)
T 3g7s_A 523 LPRTASGKLLRRLLREKEAEGH 544 (549)
T ss_dssp CC--------------------
T ss_pred CCCCCCcCEeHHHHHHHhhccc
Confidence 9999999999999999987764
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-78 Score=684.32 Aligned_cols=495 Identities=21% Similarity=0.257 Sum_probs=415.3
Q ss_pred HHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCE
Q psy8076 81 NAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAI 160 (737)
Q Consensus 81 ~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~ 160 (737)
++|++++++. |+++|+..... ..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus 4 ~l~~~~a~~~-p~~~a~~~~~~---~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 79 (503)
T 4fuq_A 4 NLFARLFDKL-DDPHKLAIETA---AGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGV 79 (503)
T ss_dssp CHHHHHHSCC-SCTTSEEEEET---TCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred hHHHHHHHhC-CCCceEEEecC---CCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence 4677888887 99998885321 1378999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHH
Q psy8076 161 HSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWD 240 (737)
Q Consensus 161 ~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~ 240 (737)
++|++|.++.+++.+++++++++++|++...... +........ ..++.+... ....+.
T Consensus 80 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~---------~~~~~~~~~---~~~~~~~~~----------~~~~~~ 137 (503)
T 4fuq_A 80 YLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDG---------IAAIAAKVG---ATVETLGPD----------GRGSLT 137 (503)
T ss_dssp EEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTT---------THHHHHHHT---CEEEECCTT----------SCSHHH
T ss_pred EEecCCCCCHHHHHHHHHhcCCcEEEECchhhHH---------HHHHHhhcC---ceEEEecCC----------cccccc
Confidence 9999999999999999999999999998764321 122222222 123332211 111122
Q ss_pred HHHhh-cCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecc
Q psy8076 241 DALAQ-RLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASD 319 (737)
Q Consensus 241 ~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~ 319 (737)
+.... ..........+++++||+||||||| .||||+++|++++..... +...++++++|++++.+|
T Consensus 138 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~sh~~l~~~~~~-~~~~~~~~~~d~~~~~~p 204 (503)
T 4fuq_A 138 DAAAGASEAFATIDRGADDLAAILYTSGTTG------------RSKGAMLSHDNLASNSLT-LVDYWRFTPDDVLIHALP 204 (503)
T ss_dssp HHHHTSCSCCCCCCCCTTSEEEEEECC--CC------------SCCEEEEEHHHHHHHHHH-HHHHTTCCTTCEEEECSC
T ss_pred hhhhcCCCCcCcCCCCCCCeEEEEECCCccc------------CCeEEEEeHHHHHHHHHH-HHHHhCCCCCCEEEEeCC
Confidence 22211 1122334567899999999999999 999999999886666554 556689999999999999
Q ss_pred cccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEE
Q psy8076 320 MGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYL 399 (737)
Q Consensus 320 ~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i 399 (737)
++|.+|+...++.+++.|+++++.+. +++..+++.++ ++|+++++|+++..|.+.... ...++++||.+
T Consensus 205 ~~~~~g~~~~~~~~l~~g~~~~~~~~-----~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~----~~~~~~~lr~~ 273 (503)
T 4fuq_A 205 IYHTHGLFVASNVTLFARGSMIFLPK-----FDPDKILDLMA--RATVLMGVPTFYTRLLQSPRL----TKETTGHMRLF 273 (503)
T ss_dssp SSSHCCCCCCHHHHHHTTCEEEECSS-----CCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTC----STTTTTTCCEE
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEcCC-----CCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCc----cccchhhcEEE
Confidence 99999977767889999999999863 78999999998 899999999999999886543 44567899999
Q ss_pred EeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcccc
Q psy8076 400 FVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHC 479 (737)
Q Consensus 400 ~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~ 479 (737)
++|||++++++.++|.+.++.+++|.||+||++...+. . ......+ +++|+|++|++ ++
T Consensus 274 ~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~-~---~~~~~~~-~~~G~p~~~~~-----~~----------- 332 (503)
T 4fuq_A 274 ISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSN-P---YDGDRVP-GAVGPALPGVS-----AR----------- 332 (503)
T ss_dssp EECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCC-C---SSSCCCT-TEEEEBCTTCE-----EE-----------
T ss_pred EECCCCCCHHHHHHHHHHhCCCccceEcccccCccccc-C---CCCCCcC-CccccCCCCeE-----EE-----------
Confidence 99999999999999999999999999999999865432 1 1223334 78899999888 77
Q ss_pred ccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeec
Q psy8076 480 VRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDT 558 (737)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~T 558 (737)
|+| ++|+++|.|+.|||+|+|| +++.|||++++.+.+.|.. +|||+|
T Consensus 333 ---------------------------i~d~~~g~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~--~g~~~T 380 (503)
T 4fuq_A 333 ---------------------------VTDPETGKELPRGDIGMIEVKGP---NVFKGYWRMPEKTKSEFRD--DGFFIT 380 (503)
T ss_dssp ---------------------------EECTTTCCBCCTTCCEEEEEEST---TSCCCBTTCHHHHHHTBCT--TSCEEE
T ss_pred ---------------------------EEECCCCCCCcCCCceEEEEECC---chhhhhcCChhhhHhhhCC--CCCeEc
Confidence 999 7899999999999999999 9999999999999988743 789999
Q ss_pred CceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCcccc
Q psy8076 559 MDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGL 638 (737)
Q Consensus 559 GDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~ 638 (737)
||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+++|++++++..++.++++|+.+++
T Consensus 381 GDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~---------- 450 (503)
T 4fuq_A 381 GDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKG---------- 450 (503)
T ss_dssp EEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT----------
T ss_pred ceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCC----------
Confidence 9999999999999999999999999999999999999999999999999999999889999999998765
Q ss_pred ccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHH
Q psy8076 639 IGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIV 718 (737)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~ 718 (737)
.. ....+++++++++|+.|++|+.++++++||+|++||+||++|+
T Consensus 451 --~~---------------------------------~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~ 495 (503)
T 4fuq_A 451 --AT---------------------------------IDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLR 495 (503)
T ss_dssp --CC---------------------------------CCHHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHH
T ss_pred --CC---------------------------------CCHHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHH
Confidence 11 1246799999999999999999999999999999999999999
Q ss_pred HHHcC
Q psy8076 719 DMARN 723 (737)
Q Consensus 719 ~~~~~ 723 (737)
+++.+
T Consensus 496 ~~~~~ 500 (503)
T 4fuq_A 496 ETYKD 500 (503)
T ss_dssp HHTTT
T ss_pred HHHHH
Confidence 99864
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-78 Score=692.09 Aligned_cols=502 Identities=21% Similarity=0.289 Sum_probs=420.8
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++++++ ||++|+++.+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 26 tl~~~l~~~a~~~-p~~~A~~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 98 (539)
T 1mdb_A 26 TFGDLLRDRAAKY-GDRIAITCGN------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRL 98 (539)
T ss_dssp CHHHHHHHHHHHH-TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHC-CCCEEEEeCC------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHc
Confidence 4788999999998 9999999876 89999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|++|.++.+++.+++++++++++|+++.... ..+...+......++ ..+.+++.... .
T Consensus 99 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~-~----------- 161 (539)
T 1mdb_A 99 GALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSG----FDYRSLARQVQSKLP-TLKNIIVAGEA-E----------- 161 (539)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETT----EEHHHHHHHHHHHCT-TCCCEEEESCC-T-----------
T ss_pred CeEEecCCCCCCHHHHHHHHHhCCCCEEEecccccc----ccHHHHHHHHHhcCC-CccEEEEcCCc-c-----------
Confidence 999999999999999999999999999999875311 112233344444444 44555543321 0
Q ss_pred cHHHHHhhcC-CCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEE
Q psy8076 238 LWDDALAQRL-SHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWT 316 (737)
Q Consensus 238 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~ 316 (737)
.+.++..... ........+++++|++||||||| .||||+++|++++....+ +...++++++|++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~th~~~~~~~~~-~~~~~~~~~~d~~l~ 228 (539)
T 1mdb_A 162 EFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTG------------LSKLIPRTHDDYIYSLKR-SVEVCWLDHSTVYLA 228 (539)
T ss_dssp TSEEGGGCCCCCCCCCCCCTTSEEEEEECCCSSS------------SCCEEEEEHHHHHHHHHH-HHHHHTCCTTCEEEE
T ss_pred chhhhhhccccccccCCCCcCceEEEEeCCCcCC------------CCcEEEEehHHHHHHHHH-HHHhhCCCCCCEEEE
Confidence 0111111111 11223467899999999999999 999999999987666554 455688999999999
Q ss_pred ecccccccchhh-hhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCC
Q psy8076 317 ASDMGWVVGHSY-ICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395 (737)
Q Consensus 317 ~~~~~~~~g~~~-~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~ 395 (737)
.+|++|++++.. .++.+|+.|+++++.+. +++..+++.|+++++|+++++|+++..|.+.... ...++++
T Consensus 229 ~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~l~~ 299 (539)
T 1mdb_A 229 ALPMAHNYPLSSPGVLGVLYAGGRVVLSPS-----PSPDDAFPLIEREKVTITALVPPLAMVWMDAASS----RRDDLSS 299 (539)
T ss_dssp CSCTTSHHHHHSSHHHHHHHTTCEEEECSS-----SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHH----CCCCCTT
T ss_pred eecccccchhhHHHHHHHHHhCCEEEECCC-----CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccc----cCCCccc
Confidence 999999998754 68999999999999863 6899999999999999999999999999876432 3447899
Q ss_pred ccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCC-CCCcceeeeecccc
Q psy8076 396 LRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGY-DGKYVNIVMLNWLD 474 (737)
Q Consensus 396 Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~-~~~~~~~~~~~~~~ 474 (737)
||.+++|||++++++.+++.+.+++.++|.||+||++..++... ....... .++|+|+++. + ++
T Consensus 300 lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~---~~~~~~~-~~~G~p~~~~~~-----~~------ 364 (539)
T 1mdb_A 300 LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLD---DPEEIIV-NTQGKPMSPYDE-----SR------ 364 (539)
T ss_dssp CCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTT---SCHHHHH-HCCCEESSTTCE-----EE------
T ss_pred eeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCC---CcHHhcC-CCCCcccCCCce-----EE------
Confidence 99999999999999999999999999999999999764332211 0011122 5788888653 4 55
Q ss_pred CccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCC
Q psy8076 475 GRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPG 554 (737)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g 554 (737)
|+|++|+++|.|+.|||+|+|| +++.|||++++.+.+.|.. +|
T Consensus 365 --------------------------------i~d~~~~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~--~g 407 (539)
T 1mdb_A 365 --------------------------------VWDDHDRDVKPGETGHLLTRGP---YTIRGYYKAEEHNAASFTE--DG 407 (539)
T ss_dssp --------------------------------EECTTSCBCCTTCCEEEEEECT---TSCSSCTTCHHHHHHHBCT--TS
T ss_pred --------------------------------EECCCCCCCcCCCcceEEeeCc---ccchhhcCChhhhhhhccC--CC
Confidence 9999999999999999999999 9999999999999888754 78
Q ss_pred eeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCC
Q psy8076 555 YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMG 634 (737)
Q Consensus 555 ~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~ 634 (737)
||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+++..++.++|+|++++.
T Consensus 408 ~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~------ 481 (539)
T 1mdb_A 408 FYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE------ 481 (539)
T ss_dssp CEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSS------
T ss_pred CeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCC------
Confidence 99999999999999999999999999999999999999999999999999999999998889999999998643
Q ss_pred ccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHh-cCCceeeeeEEEcCCCCCCCCchhh
Q psy8076 635 FSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREA-IGPIAAFKLSTSVTGLPRTRSGKTA 713 (737)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~v~~lP~t~sGKi~ 713 (737)
. . ..++|+++++++ ||.|++|+.++++++||+|++||++
T Consensus 482 ------~------------------------------~----~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~ 521 (539)
T 1mdb_A 482 ------A------------------------------P----KAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVS 521 (539)
T ss_dssp ------C------------------------------C----CHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBC
T ss_pred ------C------------------------------C----CHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEe
Confidence 0 0 256799999997 9999999999999999999999999
Q ss_pred HHHHHHHHcC
Q psy8076 714 RKSIVDMARN 723 (737)
Q Consensus 714 R~~l~~~~~~ 723 (737)
|++|++++.+
T Consensus 522 r~~L~~~~~~ 531 (539)
T 1mdb_A 522 KKALREAISE 531 (539)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-78 Score=686.44 Aligned_cols=500 Identities=20% Similarity=0.278 Sum_probs=417.5
Q ss_pred chhHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHH
Q psy8076 75 EINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLAT 154 (737)
Q Consensus 75 ~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~ 154 (737)
...++.++|+++++++ |+++|+++.+ ...++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||
T Consensus 14 ~~~~l~~~l~~~a~~~-p~~~A~~~~~----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~ 88 (517)
T 3r44_A 14 KMKNIGWMLRQRATVS-PRLQAYVEPS----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGA 88 (517)
T ss_dssp GGGCHHHHHHHHHHHS-TTSEEEEEGG----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhC-CCCeEEEeCC----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHH
Confidence 3446889999999998 9999999875 2359999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCC
Q psy8076 155 VRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPG 234 (737)
Q Consensus 155 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~ 234 (737)
+++|+++||++|.++.+++.+++++++++++|++.. ....+.......+ ....++.+..
T Consensus 89 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~----------- 147 (517)
T 3r44_A 89 AKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAP---------SAPVIDAIRAQAD-PPGTVTDWIG----------- 147 (517)
T ss_dssp HHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGG---------GHHHHHHHHHSSS-CCTTCCEEEE-----------
T ss_pred HHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCc---------hHHHHHHHHhccC-CccEEEEccC-----------
Confidence 999999999999999999999999999999999864 2334444433333 2222221111
Q ss_pred CcccHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcE
Q psy8076 235 YDILWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDV 313 (737)
Q Consensus 235 ~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~ 313 (737)
...+.+....... .......+++++||+||||||| .||||+++|++++..... +...++++++|+
T Consensus 148 -~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~sh~~l~~~~~~-~~~~~~~~~~d~ 213 (517)
T 3r44_A 148 -ADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTG------------HPKGVVHTHESVHSAASS-WASTIDVRYRDR 213 (517)
T ss_dssp -HHHHHHHHHHCCCCCCCCCCCTTSEEEEEEECC---------------CCEEEEEEHHHHHHHHHH-HHHHSCCCTTCE
T ss_pred -cccHHHHhhccCcCCCCCCCCCCCeEEEEECCcccc------------cCceeeeeHHHHHHHHHH-HHHhcCCCCCCE
Confidence 1123333332222 3334567899999999999999 999999999886666554 456689999999
Q ss_pred EEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCC
Q psy8076 314 WWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYST 393 (737)
Q Consensus 314 ~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l 393 (737)
+++.+|++|+.++...++ +++.|+++++.+. +++..+++.|+++++|++.++|++++.|.+.... ...++
T Consensus 214 ~l~~~p~~~~~~~~~~~~-~~~~G~~~v~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~~ 283 (517)
T 3r44_A 214 LLLPLPMFHVAALTTVIF-SAMRGVTLISMPQ-----FDATKVWSLIVEERVCIGGAVPAILNFMRQVPEF----AELDA 283 (517)
T ss_dssp EEECSCTTSHHHHHHHHH-HHHHTCEEEECSS-----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHH----HHCCC
T ss_pred EEEeCchHHHHHHHHHHH-HHhcCeEEEEeCC-----CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc----ccCCC
Confidence 999999999999765444 4449999999863 7999999999999999999999999999876432 34578
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccc
Q psy8076 394 DSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWL 473 (737)
Q Consensus 394 ~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~ 473 (737)
++||.+++|||++++++.+++.+. +.+++|.||+||+++..+.... ....... +++|+|+++++ ++
T Consensus 284 ~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~--~~~~~~~-~~~G~~~~~~~-----~~----- 349 (517)
T 3r44_A 284 PDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLS--EDALRKA-GSAGRATMFTD-----VA----- 349 (517)
T ss_dssp TTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECG--GGTTTTT-TCCBEECTTEE-----EE-----
T ss_pred CcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCC--ccccccC-CCCCcCCCCeE-----EE-----
Confidence 899999999999999999999887 8999999999999876665432 1222333 78888888877 77
Q ss_pred cCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCC
Q psy8076 474 DGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFP 553 (737)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~ 553 (737)
|+|++|.+++.| .|||+|+|| +++.|||++++.+.+.| .+
T Consensus 350 ---------------------------------i~d~~~~~~~~g-~GEl~v~g~---~v~~GY~~~p~~t~~~f---~~ 389 (517)
T 3r44_A 350 ---------------------------------VRGDDGVIREHG-EGEVVIKSD---ILLKEYWNRPEATRDAF---DN 389 (517)
T ss_dssp ---------------------------------EECTTSCEESSE-EEEEEEEET---TSCSEETTCHHHHHHTE---ET
T ss_pred ---------------------------------EECCCCCCCCCC-CeEEEEeCc---chhhhhCCChhhhHhhh---cC
Confidence 999999999999 899999999 99999999999998887 37
Q ss_pred CeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcC
Q psy8076 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKM 633 (737)
Q Consensus 554 g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~ 633 (737)
|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++++++..++.++++| ..++
T Consensus 390 g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~----- 463 (517)
T 3r44_A 390 GWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQ----- 463 (517)
T ss_dssp TEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECT-----
T ss_pred CCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCC-----
Confidence 9999999999999999999999999999999999999999999999999999999999998888888888 4433
Q ss_pred CccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhh
Q psy8076 634 GFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTA 713 (737)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~ 713 (737)
. ....++|+++++++||.|++|+.++++++||+|++||++
T Consensus 464 -------~---------------------------------~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~ 503 (517)
T 3r44_A 464 -------N---------------------------------EVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKIL 503 (517)
T ss_dssp -------T---------------------------------TCCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBC
T ss_pred -------C---------------------------------CCCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCcc
Confidence 0 112478999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC
Q psy8076 714 RKSIVDMARNK 724 (737)
Q Consensus 714 R~~l~~~~~~~ 724 (737)
|++|++++.+.
T Consensus 504 R~~L~~~~~~~ 514 (517)
T 3r44_A 504 KTVLREQYSAT 514 (517)
T ss_dssp HHHHHHHHGGG
T ss_pred HHHHHHHHHhh
Confidence 99999998764
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-78 Score=695.06 Aligned_cols=480 Identities=18% Similarity=0.197 Sum_probs=396.9
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++++++ ||++|+++.+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 28 tl~~~~~~~a~~~-Pd~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailka 100 (620)
T 4dg8_A 28 TVVARFSEMAALH-PHREAIRDRF------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLS 100 (620)
T ss_dssp CHHHHHHHHHHHC-TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhC-CCCeEEEcCC------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 5789999999999 9999999987 89999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|+++||++|.++.+++.+++++++++++++++....... ... .+.+.
T Consensus 101 Ga~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~-----------------~~~-~~~~~--------------- 147 (620)
T 4dg8_A 101 GHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN-----------------GLP-CVPVR--------------- 147 (620)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT-----------------TSC-EEEGG---------------
T ss_pred CCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc-----------------CCc-eeeec---------------
Confidence 999999999999999999999999999997654321110 000 00000
Q ss_pred cHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEe
Q psy8076 238 LWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317 (737)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~ 317 (737)
...............+++++||+||||||| .||||+++|+++.....+ ...+++.++|++++.
T Consensus 148 ---~~~~~~~~~~~~~~~~~d~a~iiyTSGSTG------------~PKgV~~th~~l~~~~~~--~~~~~~~~~d~~l~~ 210 (620)
T 4dg8_A 148 ---HLPAAPASVARPCFAADQIAYINFSSGTTG------------RPKAIACTHAGITRLCLG--QSFLAFAPQMRFLVN 210 (620)
T ss_dssp ---GCCCCCCCSSCCCCCTTSEEEEEEEBSSSS------------SCEEEEEEHHHHHHHHSS--CGGGTTCTTCEEEEC
T ss_pred ---cCCcCCccccCCCCCCCCeEEEEECCCccc------------cCeEEEEchHHHHHHHHH--HHhhCCCCCCEEEEE
Confidence 000000111222356899999999999999 999999999886554432 455788999999999
Q ss_pred cccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCcc
Q psy8076 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLR 397 (737)
Q Consensus 318 ~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr 397 (737)
+|++|+.+. +.++.+|+.|+++++.+.. ..++..+++.|+++++|+++++|++++.|.+... .++++||
T Consensus 211 ~p~~~~~~~-~~~~~~l~~G~~~v~~~~~---~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-------~~l~~lr 279 (620)
T 4dg8_A 211 SPLSFDAAT-LEIWGALLNGGCCVLNDLG---PLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP-------DCLGGLR 279 (620)
T ss_dssp SCTTSTHHH-HHHHHHHTTTCEEEECCSS---SCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-------GGGTTCS
T ss_pred CccCHHHHH-HHHHHHHhcCCEEEeCccc---cCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-------hhCCCcc
Confidence 999999995 5689999999999997532 4699999999999999999999999999987532 2578999
Q ss_pred EEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCc
Q psy8076 398 YLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGR 476 (737)
Q Consensus 398 ~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~ 476 (737)
.+++|||+++++..+++.+.+ +++++|.||+||+++.+++............ .++|+|++|++ ++
T Consensus 280 ~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~-~~iG~p~~~~~-----~~-------- 345 (620)
T 4dg8_A 280 QLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDD-IPIGKAIAGTA-----VL-------- 345 (620)
T ss_dssp EEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSS-CCCBEECTTEE-----EE--------
T ss_pred EEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCC-CCceecccCcE-----EE--------
Confidence 999999999999888877665 7899999999999987766544222222333 68899998888 77
Q ss_pred cccccccccccccCCCCCCCCcccccceEEEEcCCCCc-cCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCC--
Q psy8076 477 AHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSE-CEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFP-- 553 (737)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~-~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~-- 553 (737)
|+|+++++ +|.|+.|||+|+|| ++++|||++++.|.+.|.....
T Consensus 346 ------------------------------i~d~~~~~~~~~g~~GEl~i~G~---~v~~GY~~~p~~t~~~f~~~p~~~ 392 (620)
T 4dg8_A 346 ------------------------------LLDEHGQEIAEPDRAGEIVAFGA---GLAQGYRNDAARTRASFVELPYRG 392 (620)
T ss_dssp ------------------------------EECTTSCBCCSSSCCEEEEEEET---TCCSEETTCHHHHHHHEEEEEETT
T ss_pred ------------------------------EECccCCCCCCCCCceEEEEecc---ccccccCCChhhhhhhhccCCCCC
Confidence 99999888 78999999999999 9999999999999998865311
Q ss_pred ---CeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCC
Q psy8076 554 ---GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPL 630 (737)
Q Consensus 554 ---g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~ 630 (737)
+||||||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|.+|+|++.+++..++ ++++++....
T Consensus 393 ~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~-lv~~~~~~~~-- 469 (620)
T 4dg8_A 393 RLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQ-LLCAWTGKAD-- 469 (620)
T ss_dssp EEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEE-EEEEEEECTT--
T ss_pred CCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceE-EEEEEecChH--
Confidence 6999999999999999999999999999999999999999999999999999999998874444 4455443322
Q ss_pred CcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCc
Q psy8076 631 DKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSG 710 (737)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sG 710 (737)
.+++.++++||.||+|+.++++++||+|+||
T Consensus 470 -------------------------------------------------~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~G 500 (620)
T 4dg8_A 470 -------------------------------------------------ASPQALLRQLPTWQRPHACVRVEALPLTAHG 500 (620)
T ss_dssp -------------------------------------------------CCCHHHHHHSCGGGSCSEEEECSSCCCC---
T ss_pred -------------------------------------------------HHHHHHHHhChhhcCCcEEEEECcCCCCccc
Confidence 1334567789999999999999999999999
Q ss_pred hhhHHHHHHHHcCC
Q psy8076 711 KTARKSIVDMARNK 724 (737)
Q Consensus 711 Ki~R~~l~~~~~~~ 724 (737)
|+||++|++++...
T Consensus 501 KidR~~L~~~~~~~ 514 (620)
T 4dg8_A 501 KLDRAALLRRLEEP 514 (620)
T ss_dssp -CCHHHHHHHTCSC
T ss_pred CHhHHHHhhccccc
Confidence 99999999987653
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-77 Score=675.65 Aligned_cols=486 Identities=21% Similarity=0.271 Sum_probs=407.8
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++++++ ||++|+++.+ ..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 3 tl~~~l~~~a~~~-p~~~a~~~~~----~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 77 (504)
T 1t5h_X 3 TVNEMLRRAATRA-PDHCALAVPA----RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRL 77 (504)
T ss_dssp CHHHHHHHHHHHC-TTSEEEEETT----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhC-CCceEEEEcC----CCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 4678999999998 9999999862 1289999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEE--cCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCC
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIA--ASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGY 235 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~ 235 (737)
|++++|++|.++.+++.+++++++++++++ +... ...+ ....+ ..+ ++.+
T Consensus 78 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~---------~~~~---~~~~~-~~~-~~~~-------------- 129 (504)
T 1t5h_X 78 GAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV---------ADAI---FQSGS-GAR-IIFL-------------- 129 (504)
T ss_dssp TCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CH---------HHHH---HHHCC-CCE-EEEG--------------
T ss_pred CcEEEecCCccChHHHHHHHhhcCCcEEEEecchhh---------hhhh---hhccc-cce-eEEe--------------
Confidence 999999999999999999999999999999 5431 1111 12222 111 1111
Q ss_pred cccHHHHHhh------cCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcC-
Q psy8076 236 DILWDDALAQ------RLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNM- 308 (737)
Q Consensus 236 ~~~~~~~~~~------~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~- 308 (737)
.++... ..........+++++||+||||||| .||||+++|+++.....+ +...+++
T Consensus 130 ----~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PKgV~~sh~~~~~~~~~-~~~~~~~~ 192 (504)
T 1t5h_X 130 ----GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTG------------LPKAAIIPQRAAESRVLF-MSTQVGLR 192 (504)
T ss_dssp ----GGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---------------CCCEEEEEGGGHHHHHHH-HHHTTCCC
T ss_pred ----cchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCC------------CCCEEEecHHHHHHHHHH-HHHhhCCC
Confidence 111111 1111113456799999999999999 999999999987766554 4455777
Q ss_pred -CCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCcc
Q psy8076 309 -GQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTL 387 (737)
Q Consensus 309 -~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~ 387 (737)
+++|++++.+|++|+.++...++.+|..|+++++.+. +++..+++.|+++++|+++++|++++.|.+......
T Consensus 193 ~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~- 266 (504)
T 1t5h_X 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEE-----FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG- 266 (504)
T ss_dssp SSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSS-----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT-
T ss_pred CCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCC-----CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc-
Confidence 8899999999999999976778999999999999863 689999999999999999999999999987642211
Q ss_pred ccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCccee
Q psy8076 388 GAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNI 467 (737)
Q Consensus 388 ~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~ 467 (737)
...++++||.+++|||++++++.++|.+.++..++|.||+||++. +.... .... +++|.|.++++ +
T Consensus 267 -~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~~~------~~~~-~~~g~p~~~~~-----~ 332 (504)
T 1t5h_X 267 -SSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLYMR------QPKT-GTEMAPGFFSE-----V 332 (504)
T ss_dssp -CCCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEEEE------SCSS-SSEEBCCTTCC-----E
T ss_pred -ccccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccccc------CCCC-CccccCCCCCc-----e
Confidence 344689999999999999999999999999999999999999942 22211 1233 78899998888 7
Q ss_pred eeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCC---CccCCCcceEEEEe-cCCCCCcccccccChhh
Q psy8076 468 VMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDG---SECEPHELGRIVVK-LPLPPGTMSTLYKAPQR 543 (737)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g---~~~~~g~~GEL~i~-g~~~~~~~~gy~~~~~~ 543 (737)
+ |+|+++ ++++.|+.|||+|+ || +++.||+++++.
T Consensus 333 ~--------------------------------------i~~~~~~~~~~~~~g~~GEl~v~gg~---~~~~GY~~~~~~ 371 (504)
T 1t5h_X 333 R--------------------------------------IVRIGGGVDEIVANGEEGELIVAASD---SAFVGYLNQPQA 371 (504)
T ss_dssp E--------------------------------------EECTTSCTTCBCCTTCCEEEEEECCT---TSCCCBTTCHHH
T ss_pred e--------------------------------------EEeccCCCCCcCCCCCcceEEEeCCc---eeeceecCCchh
Confidence 7 999887 99999999999999 88 899999999999
Q ss_pred hHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEE
Q psy8076 544 FMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLY 623 (737)
Q Consensus 544 ~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v 623 (737)
+.+.| .+|||+|||+|++|+||+|+|+||.||+||++|+||+|.|||++|.+||+|.+|+|++.+++..++.++|+|
T Consensus 372 t~~~f---~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~v 448 (504)
T 1t5h_X 372 TAEKL---QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACV 448 (504)
T ss_dssp HHHHE---ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEE
T ss_pred hhhhh---cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEE
Confidence 98887 379999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHH-hcCCceeeeeEEEcC
Q psy8076 624 IKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVRE-AIGPIAAFKLSTSVT 702 (737)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~ 702 (737)
+++++ .. . ..++|++++++ +|+.|++|+.+++++
T Consensus 449 v~~~~------------~~-----------------------------~----~~~~l~~~~~~~~L~~~~~P~~i~~v~ 483 (504)
T 1t5h_X 449 VPRLG------------ET-----------------------------L----SADALDTFCRSSELADFKRPKRYFILD 483 (504)
T ss_dssp EECTT------------CC-----------------------------C----CHHHHHHHHHTSSCCGGGSCSEEEECS
T ss_pred EecCC------------cC-----------------------------c----CHHHHHHHHhhccCcccccceEEEEhh
Confidence 98765 10 1 24678999998 999999999999999
Q ss_pred CCCCCCCchhhHHHHHHHHc
Q psy8076 703 GLPRTRSGKTARKSIVDMAR 722 (737)
Q Consensus 703 ~lP~t~sGKi~R~~l~~~~~ 722 (737)
+||+|++||++|++|++++.
T Consensus 484 ~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 484 QLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp CCCBCTTSCBCHHHHHHHHC
T ss_pred hCCCCCCCCEeHHHHHHHhc
Confidence 99999999999999999874
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-77 Score=677.93 Aligned_cols=499 Identities=18% Similarity=0.255 Sum_probs=415.8
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcC
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 158 (737)
+.++|+++++++ ||++|+++.+ +++||+||+++++++|++|.++|+++||+|+++++|++++++++|||+++|
T Consensus 3 l~~~l~~~a~~~-p~~~A~~~~~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G 75 (512)
T 3fce_A 3 LLEQIEKWAAET-PDQTAFVWRD------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAG 75 (512)
T ss_dssp HHHHHHHHHHHS-TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHC-CCceEEEeCC------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 578899999998 9999999987 899999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCccc
Q psy8076 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL 238 (737)
Q Consensus 159 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~ 238 (737)
++++|+++.++.+++.++++++++++++++...... .....++ .. ..
T Consensus 76 ~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~-------------------~~~~~~~-~~-------------~~ 122 (512)
T 3fce_A 76 HAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT-------------------DLPVRIV-SE-------------DN 122 (512)
T ss_dssp CCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS-------------------CCSSEEE-ET-------------HH
T ss_pred CEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc-------------------cccccee-ch-------------hh
Confidence 999999999999999999999999999998543211 0000010 00 00
Q ss_pred HHHHHhhcC---CCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEE
Q psy8076 239 WDDALAQRL---SHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWW 315 (737)
Q Consensus 239 ~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l 315 (737)
+.+...... ........++++++|+||||||| .||||+++|++++....+ ....++++++|+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgv~~th~~l~~~~~~-~~~~~~~~~~d~~l 189 (512)
T 3fce_A 123 LKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTG------------NPKGVQITYNCLVSFTKW-AVEDFNLQTGQVFL 189 (512)
T ss_dssp HHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC----------------CEEEEEEHHHHHHHHHH-HHHHTTCCSSCEEE
T ss_pred hhhhcccccccCCCccccCCCCCeEEEEECCCCCC------------CCceEEEehHHHHHHHHH-HHHhcCCCCCCEEE
Confidence 111111111 11233467899999999999999 999999999887666554 55668999999999
Q ss_pred EecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCC
Q psy8076 316 TASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395 (737)
Q Consensus 316 ~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~ 395 (737)
+.+|++|+.++ +.++.+++.|+++++.+... ..++..+++.++++++|++.++|+++..+...... ...++++
T Consensus 190 ~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~~~~ 262 (512)
T 3fce_A 190 NQAPFSFDLSV-MDIYPSLVTGGTLWAIDKDM--IARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASF----SESMLPN 262 (512)
T ss_dssp ECSCTTSGGGH-HHHHHHHHTTCEEEECCHHH--HHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTC----STTTSTT
T ss_pred EeCCccHhHHH-HHHHHHHhCCCEEEECCHHH--hhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccc----cchhCcc
Confidence 99999999995 45899999999999986421 15789999999999999999999999998776543 4457889
Q ss_pred ccEEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCC-CCCCCCCccCCCcCCCCCCcceeeeeccc
Q psy8076 396 LRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQH-DTVPPKYSTGLPFPGYDGKYVNIVMLNWL 473 (737)
Q Consensus 396 Lr~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~-~~~~~~~~~G~p~~g~~~~~~~~~~~~~~ 473 (737)
||.+++|||++++++.+++.+.+ ++.++|.||+||+++.++........ ..... .++|+|+++++ ++
T Consensus 263 lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~-~~~G~~~~~~~-----~~----- 331 (512)
T 3fce_A 263 MKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKS-LPVGYCKSDCR-----LL----- 331 (512)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSS-CCCEEECTTCE-----EE-----
T ss_pred ccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCC-CccccccCCcE-----EE-----
Confidence 99999999999999999999998 78999999999999776654321110 11223 67888888877 76
Q ss_pred cCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhcc-CC
Q psy8076 474 DGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFT-KF 552 (737)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~-~~ 552 (737)
|+|++|+++++|+.|||+|+|| +++.|||++++.+.+.|.. +.
T Consensus 332 ---------------------------------i~d~~g~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~~~~ 375 (512)
T 3fce_A 332 ---------------------------------IMKEDGTIAPDGEKGEIVIVGP---SVSVGYLGSPELTEKAFTMIDG 375 (512)
T ss_dssp ---------------------------------EECSSSCBCCTTSCEEEEEEST---TSCSCBTTCHHHHHHHEEEETT
T ss_pred ---------------------------------EECCCCCCCCCCCeEEEEEecc---ccChhhcCCchhhhhccccCCC
Confidence 9999999999999999999999 9999999999999888742 33
Q ss_pred CCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCc
Q psy8076 553 PGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDK 632 (737)
Q Consensus 553 ~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~ 632 (737)
+|||+|||+|++ +||+++|+||.||+||++|++|+|.|||++|.+||+|.+|+|++++++..++.++|+|++.+.
T Consensus 376 ~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~---- 450 (512)
T 3fce_A 376 ERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEH---- 450 (512)
T ss_dssp EEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSC----
T ss_pred CEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCc----
Confidence 569999999999 899999999999999999999999999999999999999999999988888899999998765
Q ss_pred CCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchh
Q psy8076 633 MGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKT 712 (737)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi 712 (737)
.. .....+.++|+++++++||.|++|+.++++++||+|++||+
T Consensus 451 --------~~-----------------------------~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi 493 (512)
T 3fce_A 451 --------SF-----------------------------EKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKV 493 (512)
T ss_dssp --------CC-----------------------------SSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSB
T ss_pred --------cc-----------------------------cchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcCh
Confidence 11 22345678899999999999999999999999999999999
Q ss_pred hHHHHHHHHcCCCC
Q psy8076 713 ARKSIVDMARNKPL 726 (737)
Q Consensus 713 ~R~~l~~~~~~~~~ 726 (737)
+|++|++.+.+.+.
T Consensus 494 ~R~~L~~~~~~~~~ 507 (512)
T 3fce_A 494 DRKKLLSEVTALEH 507 (512)
T ss_dssp CHHHHHHHHHC---
T ss_pred HHHHHHhhhhhccc
Confidence 99999999987653
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-78 Score=687.61 Aligned_cols=505 Identities=20% Similarity=0.267 Sum_probs=331.1
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcC
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 158 (737)
+.++|+++++++ ||++|+++.+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 32 l~~~l~~~a~~~-p~~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G 104 (544)
T 3o83_A 32 LTRILTVGVQSH-PHSLAIICGE------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAG 104 (544)
T ss_dssp TTHHHHHHHHHC-TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCceEEEcCC------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence 678999999998 9999999886 999999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCccc
Q psy8076 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL 238 (737)
Q Consensus 159 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~ 238 (737)
++++|+++.++.+++.+++++++++++|+++.... ......+........ ....++++... .....
T Consensus 105 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~---------~~~~~ 170 (544)
T 3o83_A 105 VVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEV----FSNNQFIDSLHDVNL-SPEIILMLNHQ---------ATDFG 170 (544)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGG----GSSSHHHHHHHHTTC-CCSEEEEETCC---------TTSEE
T ss_pred cEEecCCCCCCHHHHHHHHHhcCeeEEEEcccccc----ccHHHHHHHHhhccc-CcceEEEecCC---------ccccc
Confidence 99999999999999999999999999999875321 111233333333333 45555554332 01122
Q ss_pred HHHHHhhcCC--CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEE
Q psy8076 239 WDDALAQRLS--HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWT 316 (737)
Q Consensus 239 ~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~ 316 (737)
+.+....... .......+++++||+||||||| .||||+++|++++....+ ....++++++|++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgv~~sh~~~~~~~~~-~~~~~~~~~~d~~l~ 237 (544)
T 3o83_A 171 LLDWIETPAETFVDFSSTPADEVAFFQLSGGSTG------------TPKLIPRTHNDYDYSVRA-SAEICGLNSNTRLLC 237 (544)
T ss_dssp HHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--C------------CCCEEEEEHHHHHHHHHH-HHHHTTCCTTCEEEE
T ss_pred hhhhhhcccccccccccCCccceEEEEECCCccc------------CCceEEechHHHHHHHHH-HHHHhCCCCCCeEEE
Confidence 3333332222 1224567899999999999999 999999999887666655 556689999999999
Q ss_pred ecccccccchhh-hhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCC
Q psy8076 317 ASDMGWVVGHSY-ICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395 (737)
Q Consensus 317 ~~~~~~~~g~~~-~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~ 395 (737)
.+|++|.+++.. .++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|.+.... ...++++
T Consensus 238 ~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~~~~ 308 (544)
T 3o83_A 238 ALPAPHNFMLSSPGALGVLHAGGCVVMAPN-----PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQ----YKDQIQS 308 (544)
T ss_dssp CSCTTSHHHHHSSHHHHHHHTTCEEEECSS-----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTT----THHHHTT
T ss_pred ecCcceEeecchHHHHHHHHcCCEEEECCC-----CCHHHHHHHHHHHCCCEEEechHHHHHHHhchhh----ccccCCc
Confidence 999999888654 57899999999999873 6899999999999999999999999999886543 3346789
Q ss_pred ccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCc-CCCCCCcceeeeecccc
Q psy8076 396 LRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPF-PGYDGKYVNIVMLNWLD 474 (737)
Q Consensus 396 Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~-~g~~~~~~~~~~~~~~~ 474 (737)
||.+++|||++++++.+++.+.++++++|.||+||++..++.... ...... .++|+|+ +++. ++
T Consensus 309 lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~---~~~~~~-~~~G~p~~~~~~-----~~------ 373 (544)
T 3o83_A 309 LKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDD---SDEQIF-TTQGRPISSDDE-----IK------ 373 (544)
T ss_dssp CCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTS---CHHHHH-HCCCEESCTTCE-----EE------
T ss_pred ceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCC---chhhcc-CCCceecCCCcE-----EE------
Confidence 999999999999999999999999999999999998754433211 111112 5678885 6666 66
Q ss_pred CccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCC
Q psy8076 475 GRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPG 554 (737)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g 554 (737)
|+|++|+++|+|+.|||+|+|| +++.|||++++.+.+.|.. +|
T Consensus 374 --------------------------------i~d~~~~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~--~g 416 (544)
T 3o83_A 374 --------------------------------IVDEQYREVPEGEIGMLATRGP---YTFCGYYQSPEHNSQVFDE--DN 416 (544)
T ss_dssp --------------------------------EECTTSCBCCTTCCEEEEEECT---TSCSCCTTCHHHHHHHBCT--TC
T ss_pred --------------------------------EECCCCCCCCCCCeeEEEEecC---CcchhhcCChhhhhhhCCC--CC
Confidence 9999999999999999999999 9999999999999888733 79
Q ss_pred eeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCC
Q psy8076 555 YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMG 634 (737)
Q Consensus 555 ~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~ 634 (737)
||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+++|++++++..|+.++|+|+.++.
T Consensus 417 ~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~------ 490 (544)
T 3o83_A 417 YYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNP------ 490 (544)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEC---------------------------------------------------------
T ss_pred CeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCC------
Confidence 99999999999999999999999999999999999999999999999999999999999889999999987654
Q ss_pred ccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHH-hcCCceeeeeEEEcCCCCCCCCchhh
Q psy8076 635 FSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVRE-AIGPIAAFKLSTSVTGLPRTRSGKTA 713 (737)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~lP~t~sGKi~ 713 (737)
.....++++++++ .|+.|++|+.++++++||+|++||+|
T Consensus 491 ----------------------------------------~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~ 530 (544)
T 3o83_A 491 ----------------------------------------ELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVD 530 (544)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------CCCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCc
Confidence 1234568888888 79999999999999999999999999
Q ss_pred HHHHHHHHcCC
Q psy8076 714 RKSIVDMARNK 724 (737)
Q Consensus 714 R~~l~~~~~~~ 724 (737)
|++|++++...
T Consensus 531 r~~L~~~~~~~ 541 (544)
T 3o83_A 531 KKQLRSILNTS 541 (544)
T ss_dssp -----------
T ss_pred HHHHHHHHhhc
Confidence 99999998754
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-76 Score=682.72 Aligned_cols=502 Identities=22% Similarity=0.298 Sum_probs=420.2
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcC
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 158 (737)
+.++|+++++ ||++|+++.+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 29 l~~~~~~~a~---pd~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG 99 (617)
T 3rg2_A 29 LTDILTRHAA---SDSIAVIDGE------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLG 99 (617)
T ss_dssp TTHHHHTTTT---CCSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhC---CCCeEEecCC------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcC
Confidence 6788988875 9999999886 999999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCccc
Q psy8076 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDIL 238 (737)
Q Consensus 159 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~ 238 (737)
+++||++|.++.+++.++++++++++++++..... ......+.......+ ....+.+.... ....
T Consensus 100 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~----------~~~~ 164 (617)
T 3rg2_A 100 VAPVLALFSHQRSELNAYASQIEPALLIADRQHAL----FSGDDFLNTFVTEHS-SIRVVQLLNDS----------GEHN 164 (617)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGG----GSSSHHHHHHHHHST-TCCEEEEETCC----------STTB
T ss_pred eEEccCCccccHHHHHHHHhhcCceEEEecccccc----cccHHHHHHHhhcCC-ccceeeecccc----------cccc
Confidence 99999999999999999999999999999875421 111122333333333 44444443322 1223
Q ss_pred HHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEe
Q psy8076 239 WDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317 (737)
Q Consensus 239 ~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~ 317 (737)
+.+....... ....+..++++|||+||||||| .||||+++|++++....+ ....+++.++|++++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG------------~PKgV~~th~~~~~~~~~-~~~~~~~~~~~~~l~~ 231 (617)
T 3rg2_A 165 LQDAINHPAEDFTATPSPADEVAYFQLSGGTTG------------TPKLIPRTHNDYYYSVRR-SVEICQFTQQTRYLCA 231 (617)
T ss_dssp HHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSS------------SCCEEEEEHHHHHHHHHH-HHHHHTCCTTCEEEEC
T ss_pred hhhhhcccccccCCCCCCCCCeEEEEECCCcCC------------CCCEeehhHHHHHHHHHH-HHHhcCCCCcceEEEe
Confidence 3333332222 2334567899999999999999 999999999887666655 5566899999999999
Q ss_pred cccccccchhh-hhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCc
Q psy8076 318 SDMGWVVGHSY-ICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSL 396 (737)
Q Consensus 318 ~~~~~~~g~~~-~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~L 396 (737)
+|++|.+++.. +++.+|+.|+++++.+. .++..+++.++++++|++.++|+++..|.+...... ...++++|
T Consensus 232 ~p~~~~~~~~~~~~~~~l~~G~~~v~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~l~~l 304 (617)
T 3rg2_A 232 IPAAHNYAMSSPGSLGVFLAGGTVVLAAD-----PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGE--SRAQLASL 304 (617)
T ss_dssp SCTTSHHHHHSSHHHHHHHHTCEEEECSS-----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTC--CTTTTTTC
T ss_pred ccchhhhhhhHHHHHHHHHcCCEEEEeCC-----CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccc--ccccCCCc
Confidence 99998887653 68899999999999863 689999999999999999999999999987543221 33368899
Q ss_pred cEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCc-CCCCCCcceeeeeccccC
Q psy8076 397 RYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPF-PGYDGKYVNIVMLNWLDG 475 (737)
Q Consensus 397 r~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~-~g~~~~~~~~~~~~~~~~ 475 (737)
|.+++|||++++++.+++.+.++++++|.||+||++..++.... ...... .++|+|+ ++.. ++
T Consensus 305 r~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~---~~~~~~-~~~G~p~~~~~~-----~~------- 368 (617)
T 3rg2_A 305 KLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDD---SAEKII-HTQGYPMCPDDE-----VW------- 368 (617)
T ss_dssp CEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTS---CHHHHH-HCCCEESCTTCE-----EE-------
T ss_pred cEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCC---cccccc-cCCCccCCCCce-----EE-------
Confidence 99999999999999999999999999999999999865443211 111111 4677776 5555 66
Q ss_pred ccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCe
Q psy8076 476 RAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGY 555 (737)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~ 555 (737)
|+|++|+++|.|+.|||+|+|| ++++||+++++.+.+.|.. +||
T Consensus 369 -------------------------------i~d~~~~~~p~G~~GEl~i~G~---~v~~GY~~~p~~t~~~f~~--~~~ 412 (617)
T 3rg2_A 369 -------------------------------VADAEGNPLPQGEVGRLMTRGP---YTFRGYYKSPQHNASAFDA--NGF 412 (617)
T ss_dssp -------------------------------EECTTSCBCCTTCCEEEEEECS---SSCSCCTTCHHHHHHHBCT--TSC
T ss_pred -------------------------------EECCCCCCCCCCCceEEEecCc---cccchhcCChhhhhhccCC--CCc
Confidence 9999999999999999999999 9999999999999998844 789
Q ss_pred eecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCc
Q psy8076 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGF 635 (737)
Q Consensus 556 ~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~ 635 (737)
|||||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|.+|+|++.+++..++.++++++..+.
T Consensus 413 yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~------- 485 (617)
T 3rg2_A 413 YCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEP------- 485 (617)
T ss_dssp EEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSC-------
T ss_pred eecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCC-------
Confidence 9999999999999999999999999999999999999999999999999999999998888999999998764
Q ss_pred cccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHH-hcCCceeeeeEEEcCCCCCCCCchhhH
Q psy8076 636 SGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVRE-AIGPIAAFKLSTSVTGLPRTRSGKTAR 714 (737)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~lP~t~sGKi~R 714 (737)
. ...++++++++ .||.||+|..++++++||+|+|||+||
T Consensus 486 -----~-----------------------------------~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR 525 (617)
T 3rg2_A 486 -----L-----------------------------------RAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDK 525 (617)
T ss_dssp -----C-----------------------------------CHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCH
T ss_pred -----C-----------------------------------CHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcH
Confidence 1 14678889988 699999999999999999999999999
Q ss_pred HHHHHHHcC
Q psy8076 715 KSIVDMARN 723 (737)
Q Consensus 715 ~~l~~~~~~ 723 (737)
++|++++..
T Consensus 526 ~~L~~~~~~ 534 (617)
T 3rg2_A 526 KQLRQWLAS 534 (617)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998753
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-76 Score=670.03 Aligned_cols=496 Identities=19% Similarity=0.223 Sum_probs=420.3
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAI-GVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~-Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
+.++|+++++++ ||++|+++.+ +++||+||+++++++|++|.+. |+++|++|+++++|++++++++|||+++
T Consensus 3 l~~~l~~~a~~~-p~~~Al~~~~------~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~ 75 (511)
T 3e7w_A 3 LLHAIQTHAETY-PQTDAFRSQG------QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKA 75 (511)
T ss_dssp HHHHHHHHHHHS-TTSEEEEETT------EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCeEEEcCC------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHh
Confidence 578899999998 9999999876 9999999999999999999885 8889999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|+++.++.+++.+++++++++++|+++....... . . ....+
T Consensus 76 G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~---------------~-~------------------~~~~~ 121 (511)
T 3e7w_A 76 GHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAV---------------G-Q------------------QIQTV 121 (511)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCC---------------C-C------------------SSCEE
T ss_pred CCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhc---------------c-c------------------cccee
Confidence 999999999999999999999999999999754321000 0 0 00112
Q ss_pred cHHHHHhhcCC--CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEE
Q psy8076 238 LWDDALAQRLS--HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWW 315 (737)
Q Consensus 238 ~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l 315 (737)
.+.++...... .......+++++||+||||||| .||||+++|++++....+ +...++++.+|+++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PKgV~~sh~~l~~~~~~-~~~~~~~~~~d~~l 188 (511)
T 3e7w_A 122 SAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTG------------NPKGVQISAANLQSFTDW-ICADFPVSGGKIFL 188 (511)
T ss_dssp EHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTS------------SCEEEEEEHHHHHHHHHH-HHHHSTTTTTCEEE
T ss_pred cHhhhhccccCCccccccCCCCCeEEEEECCCCCC------------CCCEEEEcHHHHHHHHHH-HHHhcCCCccceEE
Confidence 23333322211 1223356789999999999999 999999999887666555 45568899999999
Q ss_pred EecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCC
Q psy8076 316 TASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395 (737)
Q Consensus 316 ~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~ 395 (737)
+.+|++|+.++ +.++.+|..|+++++.+... ..++..+++.++++++|++.++|++++.+...... ....+++
T Consensus 189 ~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~~~~ 261 (511)
T 3e7w_A 189 NQAPFSFDLSV-MDLYPCLQSGGTLHCVTKDA--VNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGF----SQDLLPH 261 (511)
T ss_dssp ECSCTTSTHHH-HHHHHHHHTTCEEEECCHHH--HHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTC----STTTCTT
T ss_pred EeCCccHHHHH-HHHHHHHhcCCEEEEcChhh--hcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc----ccccCCc
Confidence 99999999985 45899999999999976421 15789999999999999999999999999876543 4456889
Q ss_pred ccEEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCC-CCCCCCCccCCCcCCCCCCcceeeeeccc
Q psy8076 396 LRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQH-DTVPPKYSTGLPFPGYDGKYVNIVMLNWL 473 (737)
Q Consensus 396 Lr~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~-~~~~~~~~~G~p~~g~~~~~~~~~~~~~~ 473 (737)
+|.+++|||++++++.+++.+.+ +.+++|.||+||+++.++........ ..... .++|+|+++++ ++
T Consensus 262 l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~-~~~G~~~~~~~-----~~----- 330 (511)
T 3e7w_A 262 ADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSES-LPVGFAKPDMN-----IF----- 330 (511)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSS-CCCBEECTTCE-----EE-----
T ss_pred ccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCc-CCCcceeCCCE-----EE-----
Confidence 99999999999999999999998 78999999999999776654331111 11222 57888888887 77
Q ss_pred cCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCC
Q psy8076 474 DGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFP 553 (737)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~ 553 (737)
|+|++|+++++|+.|||+|+|| +++.|||++++.+.+.|+...+
T Consensus 331 ---------------------------------i~d~~g~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~~~g 374 (511)
T 3e7w_A 331 ---------------------------------IMDEEGQPLPEGEKGEIVIAGP---SVSRGYLGEPELTEKAFFSHEG 374 (511)
T ss_dssp ---------------------------------EECTTSCBCCTTCCEEEEEEST---TSCCCBTTCHHHHHHHEEESSS
T ss_pred ---------------------------------EECCCCCCCCCCCceEEEEecC---ccChhhCCCcccchhhhcCCCC
Confidence 9999999999999999999999 9999999999999999876433
Q ss_pred C-eeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCc
Q psy8076 554 G-YYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDK 632 (737)
Q Consensus 554 g-~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~ 632 (737)
+ ||+|||+|++ +||+++|+||.||+||++|++|+|.|||++|.+||.|.+|+|++++++..++.++|+|++.+.
T Consensus 375 ~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~---- 449 (511)
T 3e7w_A 375 QWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEH---- 449 (511)
T ss_dssp SEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCC----
T ss_pred CEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccc----
Confidence 3 7999999999 699999999999999999999999999999999999999999999988888999999998775
Q ss_pred CCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchh
Q psy8076 633 MGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKT 712 (737)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi 712 (737)
.. .....+.++|+++++++||.|++|+.++++++||+|++||+
T Consensus 450 --------~~-----------------------------~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi 492 (511)
T 3e7w_A 450 --------EF-----------------------------EKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKI 492 (511)
T ss_dssp --------CC-----------------------------SSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCB
T ss_pred --------cc-----------------------------cchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCc
Confidence 11 22345678999999999999999999999999999999999
Q ss_pred hHHHHHHHHcCC
Q psy8076 713 ARKSIVDMARNK 724 (737)
Q Consensus 713 ~R~~l~~~~~~~ 724 (737)
+|++|++++.++
T Consensus 493 ~R~~L~~~~~~~ 504 (511)
T 3e7w_A 493 DRKRIGEEVLVR 504 (511)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHhHHhhh
Confidence 999999998654
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-78 Score=689.01 Aligned_cols=486 Identities=21% Similarity=0.297 Sum_probs=320.0
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
+++++|+++++++ ||++|+++.+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 76 ~l~~~l~~~a~~~-pd~~A~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 148 (570)
T 4gr5_A 76 CVHELFEAQAARA-PDAVALLHEA------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKA 148 (570)
T ss_dssp CHHHHHHHHHHHC-TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHC-CCCeEEECCC------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 5889999999998 9999999976 89999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|++|.++.+++.+++++++++++|+++...... . ....+ .+...
T Consensus 149 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~----------------~-~~~~~-~~~~~------------- 197 (570)
T 4gr5_A 149 GGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL----------------T-GTTTL-YVEDE------------- 197 (570)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS----------------C-SSEEE-ECCC--------------
T ss_pred CCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc----------------c-CCcce-eeecc-------------
Confidence 99999999999999999999999999999987532210 0 11111 11000
Q ss_pred cHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEe
Q psy8076 238 LWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317 (737)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~ 317 (737)
. ..............+++++||+||||||| .||||+++|++++..... ...++++++|+++++
T Consensus 198 ~---~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~th~~l~~~~~~--~~~~~~~~~d~~l~~ 260 (570)
T 4gr5_A 198 A---ASDAPAGNLATGVGPEDVACVMFTSGSTG------------RPKGVMSPHRALTGTYLG--QDYAGFGPDEVFLQC 260 (570)
T ss_dssp ---------CCCCCCCCCTTSEEEEECCSSCCS------------SCCCEEEEHHHHHHHHSS--CCSSCCSTTCEEEEC
T ss_pred c---cccccccccCCCCCCCCeEEEEECCcCCC------------CCeEEEEecHHHHHHHHh--hhhcCCCCCCEEEEe
Confidence 0 00001112233467899999999999999 999999999886544332 345678899999999
Q ss_pred cccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCcc
Q psy8076 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLR 397 (737)
Q Consensus 318 ~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr 397 (737)
+|++|+.+ .+.++.+|+.|+++++.+.. .+++..+++.|+++++|++.++|++++.|.+.... ++++||
T Consensus 261 ~p~~~~~~-~~~~~~~l~~G~~~v~~~~~---~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-------~~~~lr 329 (570)
T 4gr5_A 261 SPVSWDAF-GLELFGALLFGARCVLQSGQ---NPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE-------AFEGVR 329 (570)
T ss_dssp SCTTSSTH-HHHHHHHHTTTCEEEECSSS---SCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-------GGTTCS
T ss_pred cCccHHHH-HHHHHHHHhcCCEEEEcCCc---cCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-------hCCCce
Confidence 99999776 45689999999999998743 36899999999999999999999999999876432 478999
Q ss_pred EEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCc
Q psy8076 398 YLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGR 476 (737)
Q Consensus 398 ~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~ 476 (737)
.+++|||++++++.+++.+.+ +..++|.||+||+++..+............. .++|+|++|++ ++
T Consensus 330 ~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~-~~iG~p~~~~~-----v~-------- 395 (570)
T 4gr5_A 330 YAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTA-LPIGVPLAGKR-----AY-------- 395 (570)
T ss_dssp EEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSS-CCCBEECTTEE-----EE--------
T ss_pred EEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCc-cccceeeCCCE-----EE--------
Confidence 999999999999999988887 6899999999999877665443222222223 56888888877 77
Q ss_pred cccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccC-----
Q psy8076 477 AHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTK----- 551 (737)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~----- 551 (737)
|+|++|++++.|+.|||+|+|| +++.|||++++.+.+.|..+
T Consensus 396 ------------------------------i~d~~~~~~~~G~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~~~~~~~ 442 (570)
T 4gr5_A 396 ------------------------------VLDDDLKPAANGALGELYVAGA---GLAHGYVSRPALTAERFVADPFAGP 442 (570)
T ss_dssp ------------------------------EECTTSCBCCTTCEEEEEEEET---TCCCEETTCHHHHHHHEEECTTCCS
T ss_pred ------------------------------EECCCCCCCCCCCcEEEEEeec---ccchhcCCCchhhhcccccCCCCCC
Confidence 9999999999999999999999 99999999999999887642
Q ss_pred -CCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCC
Q psy8076 552 -FPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPL 630 (737)
Q Consensus 552 -~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~ 630 (737)
.+|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+++..++.++|+|+....
T Consensus 443 ~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~-- 520 (570)
T 4gr5_A 443 GGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERA-- 520 (570)
T ss_dssp SCCEEEEEEEEEEECTTSCEEEEEC-------------------------------------------------------
T ss_pred CCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCC--
Confidence 24799999999999999999999999999999999999999999999999999999999988888999999987654
Q ss_pred CcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCc
Q psy8076 631 DKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSG 710 (737)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sG 710 (737)
. .....++|+++|+++|+.|++|+.++++++||+|++|
T Consensus 521 ----------~--------------------------------~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~G 558 (570)
T 4gr5_A 521 ----------D--------------------------------APPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNG 558 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------C--------------------------------CCcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCc
Confidence 0 1234678999999999999999999999999999999
Q ss_pred hhhHHHHHHH
Q psy8076 711 KTARKSIVDM 720 (737)
Q Consensus 711 Ki~R~~l~~~ 720 (737)
|++|++|++.
T Consensus 559 Ki~R~~L~~~ 568 (570)
T 4gr5_A 559 KLDRRALTGS 568 (570)
T ss_dssp ----------
T ss_pred CcchHhhhcc
Confidence 9999999875
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-76 Score=672.95 Aligned_cols=509 Identities=22% Similarity=0.305 Sum_probs=411.3
Q ss_pred CCCchhHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHH
Q psy8076 72 VGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSM 151 (737)
Q Consensus 72 ~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~ 151 (737)
+...+|++.++|+++++ + ||++|+++.+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++
T Consensus 19 ~p~~~~~~~~~l~~~~~-~-p~~~A~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 90 (529)
T 2v7b_A 19 PPALFNFAAYLFRLNET-R-AGKTAYIDDT------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAF 90 (529)
T ss_dssp ---CCCHHHHHHHHTGG-G-TTSEEEECSS------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHH
T ss_pred CccceeHHHHHHHhhhc-c-CCceEEEeCC------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 34566789999999998 7 9999999875 88999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCC-CeEEEEecccccccc
Q psy8076 152 LATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKP-DYCIIFQRRCVEEAE 230 (737)
Q Consensus 152 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~viv~~~~~~~~~~ 230 (737)
|||+++|++++|+++.++.+++.+++++++++++|+++.. ...+.......+ .. ..++++.....
T Consensus 91 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~---- 156 (529)
T 2v7b_A 91 LGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGAL---------VQNVTQALESAE-HDGCQLIVSQPRES---- 156 (529)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGG---------HHHHHHHHHCC----CCEEEEECC-------
T ss_pred HHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhh---------hhHHHHHHhhcc-ccCceEEEeccccc----
Confidence 9999999999999999999999999999999999998752 233333333222 22 34444332100
Q ss_pred cCCCCcccHHHHHhhcC-CCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCC
Q psy8076 231 LTPGYDILWDDALAQRL-SHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMG 309 (737)
Q Consensus 231 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~ 309 (737)
.......+.++..... ........+++++|++||||||| .||||+++|+++...........++++
T Consensus 157 -~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgv~~sh~~l~~~~~~~~~~~~~~~ 223 (529)
T 2v7b_A 157 -EPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTG------------KPKGTVHTHANLYWTAELYAKPILGIA 223 (529)
T ss_dssp ----CCCBHHHHHHTSCCCSSCCCCCTTSEEEEEEC-----------------CCCEEEEEHHHHHHHHHHTCCCCCCCC
T ss_pred -ccccccchhhhhccCCCcccccCCCCCCeEEEEECCCCCC------------CCceEEEEhhHHHHHHHHHhhhccCCC
Confidence 0001124555554222 22233467899999999999999 999999999886344443344557889
Q ss_pred CCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCcccc
Q psy8076 310 QDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGA 389 (737)
Q Consensus 310 ~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~ 389 (737)
++|++++.+|++|++++...++.+|..|+++++.+. .+++..+++.|+++++|+++++|+++..+.......
T Consensus 224 ~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---- 295 (529)
T 2v7b_A 224 ENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAE----RPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLP---- 295 (529)
T ss_dssp TTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCS----CCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCC----
T ss_pred CCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecC----CCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccc----
Confidence 999999999999999976667889999999998752 478999999999999999999999999998754321
Q ss_pred CCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeee
Q psy8076 390 QYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVM 469 (737)
Q Consensus 390 ~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~ 469 (737)
.....+||.+++|||++++++.+++.+.++++++|.||+||++..++.... ..... +++|+|+++++ ++
T Consensus 296 ~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~----~~~~~-~~~G~p~~~~~-----~~- 364 (529)
T 2v7b_A 296 ARADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRA----GAVEY-GTTGRPVPGYE-----IE- 364 (529)
T ss_dssp CGGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCT----TCCCT-TSCCEECTTCE-----EE-
T ss_pred cccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeecccc----CCCcc-CCcccCCCCCE-----EE-
Confidence 111238999999999999999999999999999999999999765544321 12333 78899998888 77
Q ss_pred eccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhc
Q psy8076 470 LNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYF 549 (737)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~ 549 (737)
|+|++|+++|.|+.|||+|+|| +++.|||++++.+.+.|.
T Consensus 365 -------------------------------------i~d~~g~~~~~g~~GEl~v~g~---~~~~gY~~~~~~t~~~f~ 404 (529)
T 2v7b_A 365 -------------------------------------LRDEAGHAVPDGEVGDLYIKGP---SAAVMYWNNREKSRATFL 404 (529)
T ss_dssp -------------------------------------EECTTSCBCCTTSCEEEEEECT---TCCCCBTTCHHHHHHHEE
T ss_pred -------------------------------------EECCCCCCCCCCCccEEEEecC---CcccccCCChHHHHHhhh
Confidence 9999999999999999999999 999999999999988773
Q ss_pred cCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCC
Q psy8076 550 TKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIP 629 (737)
Q Consensus 550 ~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~ 629 (737)
+|||+|||+|++++||+++|+||.||+||++|+||+|.|||++|.+||+|.+++|++. ++..++.++|+|++.++
T Consensus 405 ---~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~- 479 (529)
T 2v7b_A 405 ---GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKRE- 479 (529)
T ss_dssp ---TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTT-
T ss_pred ---cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCC-
Confidence 7899999999999999999999999999999999999999999999999999999999 66677889999998765
Q ss_pred CCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCC
Q psy8076 630 LDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRS 709 (737)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~s 709 (737)
. ...+...++|+++++++|+.|++|+.++++++||+|++
T Consensus 480 -----------~------------------------------~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~ 518 (529)
T 2v7b_A 480 -----------F------------------------------APSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTAT 518 (529)
T ss_dssp -----------C------------------------------CCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTT
T ss_pred -----------C------------------------------CcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCc
Confidence 1 11233567899999999999999999999999999999
Q ss_pred chhhHHHHHHH
Q psy8076 710 GKTARKSIVDM 720 (737)
Q Consensus 710 GKi~R~~l~~~ 720 (737)
||++|++|+++
T Consensus 519 GKi~r~~L~~~ 529 (529)
T 2v7b_A 519 GKIQRFKLREQ 529 (529)
T ss_dssp SCBCHHHHHC-
T ss_pred cchhHHhHhhC
Confidence 99999999863
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-77 Score=681.05 Aligned_cols=507 Identities=21% Similarity=0.292 Sum_probs=384.3
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++++++ ||++|+++.+ .+..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 19 ~l~~~l~~~a~~~-p~~~a~~~~~--~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 95 (541)
T 1v25_A 19 NLWDFLERAAALF-GRKEVVSRLH--TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGM 95 (541)
T ss_dssp CTHHHHHHHHHHS-TTCEEEEECT--TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhC-CCceEEEEec--CCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 3678999999988 9999999743 223589999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|++|.++.+++.+++++++++++|+++. +...+......++ ..+.++++.... .....
T Consensus 96 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~ 158 (541)
T 1v25_A 96 GAVLHTANPRLSPKEIAYILNHAEDKVLLFDPN---------LLPLVEAIRGELK-TVQHFVVMDEKA-------PEGYL 158 (541)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGG---------GHHHHHHHGGGCS-SCCEEEESSSCC-------CTTCE
T ss_pred CcEEEecCcccCHHHHHHHHHhCCCcEEEEChh---------HHHHHHHHHhhCC-CccEEEEecCCC-------Ccccc
Confidence 999999999999999999999999999999864 2333444433333 445555543320 01223
Q ss_pred cHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHH-HhhhhcCCCCcEEEE
Q psy8076 238 LWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWT-MSVIYNMGQDDVWWT 316 (737)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~-~~~~~~~~~~d~~l~ 316 (737)
.+.+....... .....++++++|+||||||| .||||+++|++++...... ....++++++|++++
T Consensus 159 ~~~~~~~~~~~--~~~~~~~~~a~i~~TSGTTG------------~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~ 224 (541)
T 1v25_A 159 AYEEALGEEAD--PVRVPERAACGMAYTTGTTG------------LPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLP 224 (541)
T ss_dssp EHHHHCCSCCC--CCCCCTTSEEEEEEECSSSS------------SCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEE
T ss_pred cHHHHhhccCC--cccCCCCCcEEEEECCCCCC------------CCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEE
Confidence 45554433222 13456789999999999999 9999999998876554432 234567889999999
Q ss_pred ecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCc
Q psy8076 317 ASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSL 396 (737)
Q Consensus 317 ~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~L 396 (737)
.+|++|+.++. .++.+++.|+++++.+. .+++..+++.|+++++|+++++|+++..|.+.... ...++++|
T Consensus 225 ~~p~~h~~~~~-~~~~~l~~G~~~v~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~l~~l 295 (541)
T 1v25_A 225 VVPMFHVNAWC-LPYAATLVGAKQVLPGP----RLDPASLVELFDGEGVTFTAGVPTVWLALADYLES----TGHRLKTL 295 (541)
T ss_dssp CSCTTSHHHHT-HHHHHHHHTCEEEECTT----CCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHH----HTCCCSSC
T ss_pred eccchhhhHHH-HHHHHHhcCceEEeeCC----CCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhc----cCCcchhc
Confidence 99999999864 47889999999999763 36899999999999999999999999999875432 23467899
Q ss_pred cEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCC-------CCCCCccCCCcCCCCCCcceeee
Q psy8076 397 RYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDT-------VPPKYSTGLPFPGYDGKYVNIVM 469 (737)
Q Consensus 397 r~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~-------~~~~~~~G~p~~g~~~~~~~~~~ 469 (737)
|.+++|||++++++.++| +.++++++|.||+||++..++.......... ... .++|+|+++++ ++
T Consensus 296 r~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~p~~~~~-----~~- 367 (541)
T 1v25_A 296 RRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLK-AKTGLPIPLVR-----LR- 367 (541)
T ss_dssp CEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHH-TSCBEECTTCE-----EE-
T ss_pred cEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCcccccccc-CCCCCcCCCcE-----EE-
Confidence 999999999999999999 6689999999999999876655422100000 112 56677777766 66
Q ss_pred eccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCC--CcceEEEEecCCCCCcccccccChhhhHHh
Q psy8076 470 LNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEP--HELGRIVVKLPLPPGTMSTLYKAPQRFMKI 547 (737)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~--g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~ 547 (737)
|+|++|++++. ++.|||+|+|| +++.|||++++.+.+.
T Consensus 368 -------------------------------------i~d~~g~~~~~~~~~~GEl~v~g~---~v~~GY~~~p~~t~~~ 407 (541)
T 1v25_A 368 -------------------------------------VADEEGRPVPKDGKALGEVQLKGP---WITGGYYGNEEATRSA 407 (541)
T ss_dssp -------------------------------------EECTTSCBCCSSSCCCEEEEEEST---TSBSSCBTCHHHHHTT
T ss_pred -------------------------------------EECCCCCCCCCCCCcceEEEEeCc---chhccccCChhhhhhh
Confidence 99999999985 36899999999 9999999999999887
Q ss_pred hccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeec
Q psy8076 548 YFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKR 627 (737)
Q Consensus 548 ~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~ 627 (737)
|.. +|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++++++..++.++|+|+++.
T Consensus 408 f~~--~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~ 485 (541)
T 1v25_A 408 LTP--DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRG 485 (541)
T ss_dssp BCT--TSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC----
T ss_pred ccC--CCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECC
Confidence 743 799999999999999999999999999999999999999999999999999999999999988999999998763
Q ss_pred CCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHH-hcCCceeeeeEEEcCCCCC
Q psy8076 628 IPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVRE-AIGPIAAFKLSTSVTGLPR 706 (737)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~v~~lP~ 706 (737)
. ....+++++++++ +|+.|++|+.++++++||+
T Consensus 486 ~----------------------------------------------~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~ 519 (541)
T 1v25_A 486 E----------------------------------------------KPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPR 519 (541)
T ss_dssp -------------------------------------------------------------CCCTTTSCSBC--------
T ss_pred C----------------------------------------------CCCHHHHHHHHHhccCccccCCcEEEEeCCCCC
Confidence 2 1124568888888 8999999999999999999
Q ss_pred CCCchhhHHHHHHHHcC
Q psy8076 707 TRSGKTARKSIVDMARN 723 (737)
Q Consensus 707 t~sGKi~R~~l~~~~~~ 723 (737)
|++||++|++|++++.+
T Consensus 520 t~~GKi~r~~L~~~~~~ 536 (541)
T 1v25_A 520 TSAGKFLKRALREQYKN 536 (541)
T ss_dssp ------CCTTHHHHSTT
T ss_pred CCccCeeHHHHHHHHHH
Confidence 99999999999998765
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-77 Score=679.76 Aligned_cols=485 Identities=18% Similarity=0.241 Sum_probs=402.6
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++++++ ||++|+++.+ +++||+||+++++++|++|.++|+++||+|+|+++|++++++++|||+++
T Consensus 40 ~l~~~l~~~a~~~-p~~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 112 (563)
T 1amu_A 40 TIHQLFEEQVSKR-PNNVAIVCEN------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKA 112 (563)
T ss_dssp CHHHHHHHHHHHC-TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHC-CCCeEEEeCC------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 4788999999998 9999999876 89999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|++|.++.+++.+++++++++++|++.... ....... ....+..+... .+
T Consensus 113 Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~-------------~~~~~~~-~~~~~~~~~~~-----------~~ 167 (563)
T 1amu_A 113 GGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLV-------------HLIHNIQ-FNGQVEIFEED-----------TI 167 (563)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH-------------HHHTTSC-CCSEEEECCCS-----------TT
T ss_pred CCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchh-------------hhhhhcc-ccCceeeecch-----------hh
Confidence 99999999999999999999999999999986421 1111111 11222222111 00
Q ss_pred cHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEe
Q psy8076 238 LWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317 (737)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~ 317 (737)
. .........+..+++++||+||||||| .||||+++|++++....+ +...++++++|++++.
T Consensus 168 ~-----~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~th~~l~~~~~~-~~~~~~~~~~d~~l~~ 229 (563)
T 1amu_A 168 K-----IREGTNLHVPSKSTDLAYVIYTSGTTG------------NPKGTMLEHKGISNLKVF-FENSLNVTEKDRIGQF 229 (563)
T ss_dssp T-----TSCCSCCCCCCCTTSEEEEEEEC-----------------CEEEEEESHHHHHHHHH-HHHTSCCCTTCEEEEC
T ss_pred c-----cccCccCCCCCCCCCeEEEEECCCCCC------------CCcEEEEehHHHHHHHHH-HHHhcCCCCCCEEEEe
Confidence 0 000111123456789999999999999 999999999886655443 5566889999999999
Q ss_pred cccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCcc
Q psy8076 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLR 397 (737)
Q Consensus 318 ~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr 397 (737)
+|++|+.++ +.++.+|+.|+++++.+... ..++..+++.++++++|++.++|+++..|.. ..+++||
T Consensus 230 ~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~----------~~~~~lr 296 (563)
T 1amu_A 230 ASISFDASV-WEMFMALLTGASLYIILKDT--INDFVKFEQYINQKEITVITLPPTYVVHLDP----------ERILSIQ 296 (563)
T ss_dssp SCTTSTHHH-HHHHHHHTTTCEEEECCHHH--HTCHHHHHHHHHHTTCCEEEECHHHHTTSCT----------TTCCSCS
T ss_pred CCccHHHHH-HHHHHHHHCCCEEEEcChHh--hcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh----------ccccccc
Confidence 999999985 46889999999999986422 2589999999999999999999999887632 1467899
Q ss_pred EEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcc
Q psy8076 398 YLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRA 477 (737)
Q Consensus 398 ~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~ 477 (737)
.+++||+++++++.++|.+. ..++|.||+||++..++...... ...... .++|+|+++++ ++
T Consensus 297 ~~~~gG~~l~~~~~~~~~~~--~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~-~~vG~p~~~~~-----v~--------- 358 (563)
T 1amu_A 297 TLITAGSATSPSLVNKWKEK--VTYINAYGPTETTICATTWVATK-ETIGHS-VPIGAPIQNTQ-----IY--------- 358 (563)
T ss_dssp EEEEESSCCCHHHHHHHTTT--SEEEEEECCGGGSSCSEEEECCS-SCCCSS-CCCBEECTTEE-----EE---------
T ss_pred EEEEEEecCCHHHHHHHHhC--CeEEEEECcCHHhHhheeeeccc-ccCCCC-CcccceeCCCE-----EE---------
Confidence 99999999999999999874 78999999999987665543211 111223 67888888877 77
Q ss_pred ccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccC----CC
Q psy8076 478 HCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTK----FP 553 (737)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~----~~ 553 (737)
|+|++|++++.|+.|||+|+|| +++.|||++++.+.+.|... .+
T Consensus 359 -----------------------------i~d~~~~~~~~g~~GEl~v~g~---~v~~GY~~~pe~t~~~f~~~~~~~g~ 406 (563)
T 1amu_A 359 -----------------------------IVDENLQLKSVGEAGELCIGGE---GLARGYWKRPELTSQKFVDNPFVPGE 406 (563)
T ss_dssp -----------------------------EECTTSCBCCTTCEEEEEEEET---TCCCEETTCHHHHHHHEEECSSSTTS
T ss_pred -----------------------------EECCCcCCCCCCCcEEEEEech---hhChhhCCCchhhhhhcccCCCCCCC
Confidence 9999999999999999999999 99999999999998887542 34
Q ss_pred CeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcC
Q psy8076 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKM 633 (737)
Q Consensus 554 g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~ 633 (737)
|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+++..++.++|+|+....
T Consensus 407 ~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~----- 481 (563)
T 1amu_A 407 KLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH----- 481 (563)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSC-----
T ss_pred EEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCC-----
Confidence 699999999999999999999999999999999999999999999999999999999998888999999987643
Q ss_pred CccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhh
Q psy8076 634 GFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTA 713 (737)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~ 713 (737)
. ..++|+++++++||.|++|+.++++++||+|++||++
T Consensus 482 -------~-----------------------------------~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~ 519 (563)
T 1amu_A 482 -------I-----------------------------------PLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKID 519 (563)
T ss_dssp -------C-----------------------------------CHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBC
T ss_pred -------C-----------------------------------CHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChh
Confidence 1 1467999999999999999999999999999999999
Q ss_pred HHHHHHHHc
Q psy8076 714 RKSIVDMAR 722 (737)
Q Consensus 714 R~~l~~~~~ 722 (737)
|++|++...
T Consensus 520 r~~L~~~~~ 528 (563)
T 1amu_A 520 RKQLPEPDL 528 (563)
T ss_dssp GGGSCCCCC
T ss_pred HHhcCCccc
Confidence 999988654
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-76 Score=672.61 Aligned_cols=504 Identities=18% Similarity=0.258 Sum_probs=420.8
Q ss_pred HHHH-HHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHH
Q psy8076 78 ACYN-AIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVR 156 (737)
Q Consensus 78 ~~~~-~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~ 156 (737)
++.+ +|.++++++ |++|+++.+ ..+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||++
T Consensus 26 ~l~~~~l~~~~~~~--~~~A~~~~~----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~ 99 (548)
T 2d1s_A 26 GTQLRKYMERYAKL--GAIAFTNAV----TGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLF 99 (548)
T ss_dssp HHHHHHHHHHHHHH--TCEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred cHHHHHHHhhhccc--CCceEEEcC----CCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHh
Confidence 4566 777777664 999999742 137899999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCc
Q psy8076 157 LGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYD 236 (737)
Q Consensus 157 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~ 236 (737)
+|++++|++|.++.+++.+++++++++++|+++.. ...+......++ ....++++..... ....
T Consensus 100 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~ 163 (548)
T 2d1s_A 100 IGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKG---------LDKVITVQKTVT-TIKTIVILDSKVD------YRGY 163 (548)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTT---------HHHHHHHHHHST-TCCEEEETTCSSC------BTTB
T ss_pred hCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHH---------HHHHHHHhcCCC-CCCEEEEeCCccc------cccc
Confidence 99999999999999999999999999999998753 233444444443 2445554432100 0012
Q ss_pred ccHHHHHhhcCC--CCCcccc-----C-CCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhh--h
Q psy8076 237 ILWDDALAQRLS--HRCVPVE-----A-NDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVI--Y 306 (737)
Q Consensus 237 ~~~~~~~~~~~~--~~~~~~~-----~-~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~--~ 306 (737)
..+.++...... ....... + ++++||+||||||| .||||+++|++++....+..... +
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgv~~sh~~~~~~~~~~~~~~~~~ 231 (548)
T 2d1s_A 164 QCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTG------------LPKGVQLTHENIVTRFSHARDPIYGN 231 (548)
T ss_dssp CBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSS------------SCCCEEEEHHHHHHHHHHHTCTTTSC
T ss_pred ccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCC------------CCCEEEecHHHHHHHHHHhhchhhcc
Confidence 345555544321 1111222 4 89999999999999 99999999998776655533222 6
Q ss_pred cCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCc
Q psy8076 307 NMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDST 386 (737)
Q Consensus 307 ~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~ 386 (737)
+++++|++++.+|++|+.++...++.++ .|+++++.+ .+++..+++.|+++++|+++++|++++.|.+....
T Consensus 232 ~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-- 303 (548)
T 2d1s_A 232 QVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-----KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELL-- 303 (548)
T ss_dssp CCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-----CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCG--
T ss_pred CCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-----CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccc--
Confidence 7889999999999999999765567777 999999986 36899999999999999999999999999886542
Q ss_pred cccCCCCCCccEEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcc
Q psy8076 387 LGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYV 465 (737)
Q Consensus 387 ~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~ 465 (737)
...++++||.+++|||++++++.+++.+.+ +..++|.||+||++..++... ....+. +++|+|+++++
T Consensus 304 --~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~----~~~~~~-~~~G~~~~~~~---- 372 (548)
T 2d1s_A 304 --NKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITP----EGDDKP-GASGKVVPLFK---- 372 (548)
T ss_dssp --GGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECC----TTCCCT-TCCBEECTTCE----
T ss_pred --ccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecC----cccCCC-CCCCccCCCce----
Confidence 345789999999999999999999999998 578999999999987665522 122334 78899998888
Q ss_pred eeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhhh
Q psy8076 466 NIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRF 544 (737)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~ 544 (737)
++ |+| ++|+++++|+.|||+|+|| +++.|||++++.+
T Consensus 373 -~~--------------------------------------i~d~~~~~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t 410 (548)
T 2d1s_A 373 -AK--------------------------------------VIDLDTKKSLGPNRRGEVCVKGP---MLMKGYVNNPEAT 410 (548)
T ss_dssp -EE--------------------------------------EECTTTCCBCCTTCCEEEEEEST---TSCSEETTCHHHH
T ss_pred -EE--------------------------------------EEeCCcCccCCCCCCeEEEECCH---HHhhhhcCChHHh
Confidence 77 999 7899999999999999999 9999999999999
Q ss_pred HHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEE
Q psy8076 545 MKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYI 624 (737)
Q Consensus 545 ~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~ 624 (737)
.+.|. .+|||+|||+|++|+||+++|+||.||+||++|+||+|.|||++|.+||+|.+|+|++.+++..|+.++|+|+
T Consensus 411 ~~~f~--~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv 488 (548)
T 2d1s_A 411 KELID--EEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVV 488 (548)
T ss_dssp HHHBC--TTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhccc--CCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEE
Confidence 88763 3789999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred eecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeee-eEEEcCC
Q psy8076 625 KKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFK-LSTSVTG 703 (737)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~~v~~ 703 (737)
++++ .. ...++|+++++++|+.|++|+ .++++++
T Consensus 489 ~~~~------------~~---------------------------------~~~~~l~~~~~~~l~~~~~p~~~i~~v~~ 523 (548)
T 2d1s_A 489 LESG------------KN---------------------------------MTEKEVMDYVASQVSNAKRLRGGVRFVDE 523 (548)
T ss_dssp ECTT------------CC---------------------------------CCHHHHHHHHHTTSCGGGSCTTCEEECSS
T ss_pred EcCC------------CC---------------------------------CCHHHHHHHHHHhccccccccccEEEccC
Confidence 8764 10 125679999999999999999 9999999
Q ss_pred CCCCCCchhhHHHHHHHHcC
Q psy8076 704 LPRTRSGKTARKSIVDMARN 723 (737)
Q Consensus 704 lP~t~sGKi~R~~l~~~~~~ 723 (737)
||+|++||++|++|++++.+
T Consensus 524 lP~t~~GKi~r~~L~~~~~~ 543 (548)
T 2d1s_A 524 VPKGLTGKIDGRAIREILKK 543 (548)
T ss_dssp CCBCTTSCBCHHHHHHHHHS
T ss_pred CCCCCcchhHHHHHHHHHhh
Confidence 99999999999999999865
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-76 Score=668.93 Aligned_cols=505 Identities=21% Similarity=0.237 Sum_probs=408.9
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
.+.++|+++++++ ||++|+.+.+ +++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++
T Consensus 5 ~l~~~l~~~a~~~-p~~~a~~~~~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~ 77 (521)
T 3l8c_A 5 DMIDSIEQFAQTQ-ADFPVYDCLG------ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKS 77 (521)
T ss_dssp CHHHHHHHHHHHS-TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC-CCCcceecCC------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 4678999999998 9999999887 89999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|+++.++.+++.+++++++++++|+++......... .++.+.
T Consensus 78 G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~------------------~~~~~~--------------- 124 (521)
T 3l8c_A 78 GHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI------------------SLVSLS--------------- 124 (521)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTS------------------EEEEHH---------------
T ss_pred CCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccccC------------------cccchh---------------
Confidence 99999999999999999999999999999987643211100 000000
Q ss_pred cHHHHH-hhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhh-hhcCCCCcEEE
Q psy8076 238 LWDDAL-AQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSV-IYNMGQDDVWW 315 (737)
Q Consensus 238 ~~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~-~~~~~~~d~~l 315 (737)
.+.... ............++++++|+||||||| .||||+++|++++....+.... .+++..+++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l 192 (521)
T 3l8c_A 125 EIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTG------------QPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQML 192 (521)
T ss_dssp HHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---------------CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEE
T ss_pred hhhhcccccCCcccCCCCCCCCcEEEEEcCCCCC------------CCCEEEEehHHHHHHHHHHhhccccCCCCCCeEE
Confidence 011111 111112334567899999999999999 9999999999877665543222 36788999999
Q ss_pred EecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCC
Q psy8076 316 TASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395 (737)
Q Consensus 316 ~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~ 395 (737)
+..|++|+.+. ..++.++..|+++++.+... ..++..+++.++++++|++.++|+++..+...... ...++++
T Consensus 193 ~~~~~~~~~~~-~~~~~~l~~G~~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~~~~ 265 (521)
T 3l8c_A 193 AQPPYSFDLSV-MYWAPTLALGGTLFALPKEL--VADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDF----CQAKMPA 265 (521)
T ss_dssp CCSCTTSGGGH-HHHHHHHHTTCEEEECCGGG--TTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTC----STTTCTT
T ss_pred ecCCccHHHHH-HHHHHHHhcCCEEEEcCHHH--hhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcc----ccccCcc
Confidence 99999999885 45788999999999987532 25899999999999999999999999998876543 3457889
Q ss_pred ccEEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCC-CCCCCCCccCCCcCCCCCCcceeeeeccc
Q psy8076 396 LRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQH-DTVPPKYSTGLPFPGYDGKYVNIVMLNWL 473 (737)
Q Consensus 396 Lr~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~-~~~~~~~~~G~p~~g~~~~~~~~~~~~~~ 473 (737)
||.+++||+++++++.+++.+.+ ++++++.||+||+++.++........ ..... .++|+|+++++ ++
T Consensus 266 lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~-~~vG~p~~~~~-----~~----- 334 (521)
T 3l8c_A 266 LTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTR-LPIGYPKPDSP-----TY----- 334 (521)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSS-CEEEEECTTSC-----EE-----
T ss_pred ceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCc-cccccccCCCE-----EE-----
Confidence 99999999999999999999988 78999999999999776654321110 11222 67889998888 77
Q ss_pred cCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhcc-CC
Q psy8076 474 DGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFT-KF 552 (737)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~-~~ 552 (737)
|+|++|++++.|+.|||+|+|| +++.|||++++.+.+.|+. +.
T Consensus 335 ---------------------------------i~d~~g~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~~~~ 378 (521)
T 3l8c_A 335 ---------------------------------IIDEDGKELSSGEQGEIIVTGP---AVSKGYLNNPEKTAEAFFTFKG 378 (521)
T ss_dssp ---------------------------------EECTTSCBCCTTCCEEEEEEST---TSCSCBTTCHHHHHHHEEEETT
T ss_pred ---------------------------------EECCCcCCCCCCCceEEEeccc---ccChhhcCCchHhhccCcCCCC
Confidence 9999999999999999999999 9999999999999998764 34
Q ss_pred CCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCC-CCcceEEEEEeecCCCC
Q psy8076 553 PGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPT-KGEIPFCLYIKKRIPLD 631 (737)
Q Consensus 553 ~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~-~~~~~~a~v~~~~~~~~ 631 (737)
+|||+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++. .++.++|+|+++++...
T Consensus 379 ~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~ 458 (521)
T 3l8c_A 379 QPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKE 458 (521)
T ss_dssp EEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGG
T ss_pred ceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcccc
Confidence 57999999999999999999999999999999999999999999999999999999987644 46889999999876110
Q ss_pred cCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCch
Q psy8076 632 KMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGK 711 (737)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGK 711 (737)
. . .....+.++|+++++++|+.|++|+.++++++||+|++||
T Consensus 459 ~--------~------------------------------~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GK 500 (521)
T 3l8c_A 459 R--------F------------------------------DRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGK 500 (521)
T ss_dssp G--------C------------------------------SSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSS
T ss_pred c--------c------------------------------ccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcC
Confidence 0 0 1123567899999999999999999999999999999999
Q ss_pred hhHHHHHHHHcCCCC
Q psy8076 712 TARKSIVDMARNKPL 726 (737)
Q Consensus 712 i~R~~l~~~~~~~~~ 726 (737)
+||++|++.+.+++-
T Consensus 501 idr~~L~~~~~~~~~ 515 (521)
T 3l8c_A 501 IDIKTLINEVNNREG 515 (521)
T ss_dssp BCHHHHHHHTC----
T ss_pred ccHHHHhhhhhcCCc
Confidence 999999999987643
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-77 Score=682.30 Aligned_cols=511 Identities=18% Similarity=0.235 Sum_probs=327.1
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|.++++++ |+++|++.... ....+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 21 tl~~~l~~~a~~~-p~~~a~~a~~~-~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 98 (550)
T 3rix_A 21 TAGEQLHKAMKRY-ALVPGTIAFTD-AHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFI 98 (550)
T ss_dssp CHHHHHHHHHHHH-HTSTTCEEEEE-TTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHhC-CCCceEEEeee-cCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHc
Confidence 4788999999998 99999762110 112379999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|++|.++.+++.+++++++++++|+++. ....+.......+ ....++++..... .....
T Consensus 99 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~ 162 (550)
T 3rix_A 99 GVAVAPANDIYNERELLNSMNISQPTVVFVSKK---------GLQKILNVQKKLP-IIQKIIIMDSKTD------YQGFQ 162 (550)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEECGG---------GHHHHHHHHHHCT-TCCEEEETTCSSC------BTTBC
T ss_pred CCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHH---------HHHHHHHHHhhCC-CcceEEEEcCCcc------ccCcc
Confidence 999999999999999999999999999999875 3344555555555 5666666543210 11233
Q ss_pred cHHHHHhhcCC-------C-CCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhh--hc
Q psy8076 238 LWDDALAQRLS-------H-RCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVI--YN 307 (737)
Q Consensus 238 ~~~~~~~~~~~-------~-~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~--~~ 307 (737)
.+.++...... . +.....+++++||+||||||| .||||+++|++++....+..... ++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~th~~~~~~~~~~~~~~~~~~ 230 (550)
T 3rix_A 163 SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTG------------LPKGVALPHRTACVRFSHARDPIFGNQ 230 (550)
T ss_dssp BHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----------------CCCEEEEEHHHHHHHHHHHTCTTTSCC
T ss_pred cHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCccc------------CcchhhhhHHHHHHHHHHhhhhhcccc
Confidence 45555443221 0 111224578999999999999 99999999998776665543332 46
Q ss_pred CCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCcc
Q psy8076 308 MGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTL 387 (737)
Q Consensus 308 ~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~ 387 (737)
+.++|++++.+|++|++++ +.++.+|..|+++++.+. +++..+++.|+++++|+++++|+++..|.+....
T Consensus 231 ~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--- 301 (550)
T 3rix_A 231 IIPDTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYR-----FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI--- 301 (550)
T ss_dssp CCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEECSS-----CCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGG---
T ss_pred CCCCcEEEEechHHHHHHH-HHHHHHHHcCCEEEEeCC-----CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccc---
Confidence 7899999999999999996 457889999999999863 7899999999999999999999999999887543
Q ss_pred ccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCc-ccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcce
Q psy8076 388 GAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVT-MLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVN 466 (737)
Q Consensus 388 ~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~-i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~ 466 (737)
...++++||.+++|||++++++.+++.+.++.. ++|.||+||+++.++.... ...++ +++|+|+++++
T Consensus 302 -~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~----~~~~~-~~vG~~~~~~~----- 370 (550)
T 3rix_A 302 -DKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPE----GDDKP-GAVGKVVPFFE----- 370 (550)
T ss_dssp -GGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCT----TCCCT-TEEEEECTTCE-----
T ss_pred -cccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCC----CCCCC-CCcccccCCcE-----
Confidence 455789999999999999999999999999865 8999999999977665432 23344 78999999888
Q ss_pred eeeeccccCccccccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhhhH
Q psy8076 467 IVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFM 545 (737)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~ 545 (737)
++ |+| ++|++++.|+.|||+|+|| +++.|||++++.+.
T Consensus 371 ~~--------------------------------------i~d~~~~~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~ 409 (550)
T 3rix_A 371 AK--------------------------------------VVDLDTGKTLGVNQRGELCVRGP---MIMSGYVNNPEATN 409 (550)
T ss_dssp EE--------------------------------------EECTTTCCBCCTTCCEEEEEEST---TSCSEETTCHHHHH
T ss_pred EE--------------------------------------EEeCCCCcCCCCCCCeEEEEeCC---CcchhhcCChhhhh
Confidence 77 999 5799999999999999999 99999999999998
Q ss_pred HhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEe
Q psy8076 546 KIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIK 625 (737)
Q Consensus 546 ~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~ 625 (737)
+.|. .+|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+|+|++++++..++.++++|++
T Consensus 410 ~~~~--~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~ 487 (550)
T 3rix_A 410 ALID--KDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 487 (550)
T ss_dssp HHBC--TTSCEEEEEEEEECTTCCEEEC----------------------------------------------------
T ss_pred hhcC--CCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEe
Confidence 7663 37999999999999999999999999999999999999999999999999999999999999899999999998
Q ss_pred ecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceee-eeEEEcCCC
Q psy8076 626 KRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAF-KLSTSVTGL 704 (737)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p-~~~~~v~~l 704 (737)
.++ . ....++|+++++++++.++.| ..++++++|
T Consensus 488 ~~~------------~---------------------------------~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~l 522 (550)
T 3rix_A 488 EHG------------K---------------------------------TMTEKEIVDYVASQVTTAKKLRGGVVFVDEV 522 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCC------------C---------------------------------CCCHHHHHHHHHHhcccccccCCceEEEeec
Confidence 765 1 123567999999999988654 579999999
Q ss_pred CCCCCchhhHHHHHHHHcCCCC
Q psy8076 705 PRTRSGKTARKSIVDMARNKPL 726 (737)
Q Consensus 705 P~t~sGKi~R~~l~~~~~~~~~ 726 (737)
|+|++||+||++|++++.+..-
T Consensus 523 P~t~~GKi~r~~L~~~~~~~~~ 544 (550)
T 3rix_A 523 PKGLTGKLDARKIREILIKAKK 544 (550)
T ss_dssp ----------------------
T ss_pred CCCCCcceeHHHHHHHHHhhcc
Confidence 9999999999999999977543
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-77 Score=672.73 Aligned_cols=493 Identities=22% Similarity=0.251 Sum_probs=319.2
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++++++ ||++|+++.+ +++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 7 tl~~~l~~~a~~~-pd~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 79 (509)
T 3ivr_A 7 TLADVYRRNAALF-PDRTAFMVDG------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALI 79 (509)
T ss_dssp CHHHHHHHHHHHS-TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHC-CCceEEEECC------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 4789999999998 9999999976 99999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|++|.++.+++.+++++++++++|++... ...+......++ ....++.+... ..
T Consensus 80 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~-----------~~ 138 (509)
T 3ivr_A 80 GAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDY---------RDIVAGVLPSLG-GVKKAYAIGDG-----------SG 138 (509)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTT---------HHHHHHHGGGCS-SCCEEEESSCC-----------CS
T ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEECcch---------hhhHHhhhcccC-CceEEEEcCCC-----------Cc
Confidence 9999999999999999999999999999998753 233233333333 44555554331 11
Q ss_pred cHHHHHh--hcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEE
Q psy8076 238 LWDDALA--QRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWW 315 (737)
Q Consensus 238 ~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l 315 (737)
.+.+... ...........+++++||+||||||| .||||+++|++++....+ +...++++++|+++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~sh~~l~~~~~~-~~~~~~~~~~d~~l 205 (509)
T 3ivr_A 139 PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGG------------RPRGALISQGNLLIAQSS-LVDAWRLTEADVNL 205 (509)
T ss_dssp SCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--C------------CEEEEEEEHHHHHHHHHH-HHHHTTCCTTCEEE
T ss_pred ChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCC------------CCcEEEEehHHHHHHHHH-HHHhhCCCCCcEEE
Confidence 1111111 11112334567899999999999999 999999999887666554 55668999999999
Q ss_pred EecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCC
Q psy8076 316 TASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395 (737)
Q Consensus 316 ~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~ 395 (737)
+.+|++|++++.. ++.++..|++.++.. .+++..+++.|+++++|++.++|+++..|.+... ..++++
T Consensus 206 ~~~p~~~~~g~~~-~~~~~~~~g~~~~~~-----~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~------~~~l~~ 273 (509)
T 3ivr_A 206 GMLPLFHVTGLGL-MLTLQQAGGASVIAA-----KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA------PAQLAS 273 (509)
T ss_dssp ECSCTTSHHHHHH-HHHHHHHTCEEEECS-----SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC------GGGGTT
T ss_pred EeCCCcchhHHHH-HHHHHHhCCcEEEec-----ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc------ccchhh
Confidence 9999999999765 444445555555544 2689999999999999999999999999988752 235789
Q ss_pred ccEEEeecCCCCHHHHHHHHHhc-CCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeecccc
Q psy8076 396 LRYLFVAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLD 474 (737)
Q Consensus 396 Lr~i~~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~ 474 (737)
||.++.+|++ +..+++.+.+ ++.++|.||+||+++.++.... ...+ .++|+|+++++ ++
T Consensus 274 lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~-----~~~~-~~~G~p~~~~~-----~~------ 333 (509)
T 3ivr_A 274 LRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPY-----RDRP-KSAGRPLFWRT-----VA------ 333 (509)
T ss_dssp CCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEG-----GGST-TSCCEECTTCE-----EE------
T ss_pred hheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCcc-----ccCC-CcccccCCCcE-----EE------
Confidence 9999999987 8888888888 8999999999999977665432 1122 45889998888 77
Q ss_pred CccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCC
Q psy8076 475 GRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPG 554 (737)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g 554 (737)
|+|++|+++++|+.|||+|+|| +++.|||++++.+.+.|. +|
T Consensus 334 --------------------------------i~d~~~~~~~~g~~GEl~v~g~---~~~~gY~~~~~~t~~~f~---~g 375 (509)
T 3ivr_A 334 --------------------------------VVDAEDRPLPPGEVGEIVLRGP---TVFKGYWNNAAATQHAFR---NG 375 (509)
T ss_dssp --------------------------------EECTTSCBCCTTCCEEEEEEST---TSCCEETTCHHHHHHHTG---GG
T ss_pred --------------------------------EECCCCCCCCCCCceEEEEecC---CccccccCCHHHhHHHhh---cC
Confidence 9999999999999999999999 999999999999988873 78
Q ss_pred eeecCceEEEecCceEEEEeec--CCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCc
Q psy8076 555 YYDTMDAGYYDENGYIYVTARD--DDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDK 632 (737)
Q Consensus 555 ~~~TGDl~~~~~dG~l~i~GR~--dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~ 632 (737)
||+|||+|++|+||+++|+||. ||+||++|+||+|.|||++|.+||+|.+|+|++++++..++.++++|++.++
T Consensus 376 ~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~---- 451 (509)
T 3ivr_A 376 WHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPG---- 451 (509)
T ss_dssp SEEEEEEEEECTTSCEEEEEEC----------------------------------------------------------
T ss_pred CcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCC----
Confidence 9999999999999999999999 9999999999999999999999999999999999999889999999998765
Q ss_pred CCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchh
Q psy8076 633 MGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKT 712 (737)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi 712 (737)
. ....++|+++++++|+.|++|+.++++++||+|++||+
T Consensus 452 --------~---------------------------------~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi 490 (509)
T 3ivr_A 452 --------E---------------------------------SIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAI 490 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------C---------------------------------CCCHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCc
Confidence 1 12356899999999999999999999999999999999
Q ss_pred hHHHHHHHHcCCCC
Q psy8076 713 ARKSIVDMARNKPL 726 (737)
Q Consensus 713 ~R~~l~~~~~~~~~ 726 (737)
||++|++++.+..-
T Consensus 491 dr~~Lr~~~~~~~~ 504 (509)
T 3ivr_A 491 DRAAVKTAHGQEGH 504 (509)
T ss_dssp --------------
T ss_pred cHHHHHHHHhhccc
Confidence 99999999887543
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-76 Score=718.07 Aligned_cols=565 Identities=19% Similarity=0.240 Sum_probs=338.3
Q ss_pred eeecccccccccccCChh-HHHHHHHHHhhChhhHHHHHHhhcccccCccccccCCCCCCCCCCCCCchhHHHHHHhhhh
Q psy8076 9 SLDFSGNKINECTSNQND-KYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQPFTKWFVGGEINACYNAIDRHV 87 (737)
Q Consensus 9 ~~~y~~~~~~~~~~~~~~-~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~l~~~~ 87 (737)
+-+|++++.++++++++. ++..+++.....+..... ...|.... +. ..++. ..+++++|++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---------~~-~~~p~--~~tl~~~l~~~a 71 (979)
T 3tsy_A 8 HHHSSGLVPRGSHMARMAPQEQAVSQVMEKQSNNNNS----DVIFRSKL---------PD-IYIPN--HLSLHDYIFQNI 71 (979)
T ss_dssp -----------------------------------------CCCBCCSS---------CC-CCCCT--TSCHHHHHTTTG
T ss_pred cccccCcccCcchhhhhhhHHHHHHHhhhhcccCCCC----CceeecCC---------CC-CCCCC--CCCHHHHHHHHH
Confidence 347999999999999965 677777665544443111 11221111 11 11111 125789999999
Q ss_pred hccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCC
Q psy8076 88 ERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGG 167 (737)
Q Consensus 88 ~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~ 167 (737)
+++ ||++|+++.. ..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|+++||++|.
T Consensus 72 ~~~-pd~~Al~~~~----~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~ 146 (979)
T 3tsy_A 72 SEF-ATKPCLINGP----TGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPF 146 (979)
T ss_dssp GGT-TTSEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTT
T ss_pred HhC-CCCeEEEECC----CCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCC
Confidence 998 9999999863 12789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHHHhhcC
Q psy8076 168 FAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRL 247 (737)
Q Consensus 168 ~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (737)
++.+++.+++++++++++|++...... +....... ...++.++.. ...........+.++.....
T Consensus 147 ~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 211 (979)
T 3tsy_A 147 FTPAEIAKQAKASNTKLIITEARYVDK---------IKPLQNDD---GVVIVCIDDN---ESVPIPEGCLRFTELTQSTT 211 (979)
T ss_dssp SCHHHHHHHHHHHTEEEEEECSTTTTT---------SHHHHHTS---CCEEEECCCC---TTSCCCTTEEEGGGTSSCCS
T ss_pred CCHHHHHHHHHHcCCeEEEEChHHHHH---------HHHHhhcC---CceEEEeCCc---ccccCCcccccHHHHhhccc
Confidence 999999999999999999999865432 22222211 1223333221 00011112233333332211
Q ss_pred ----CCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHh---hhhcCCCCcEEEEeccc
Q psy8076 248 ----SHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMS---VIYNMGQDDVWWTASDM 320 (737)
Q Consensus 248 ----~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~---~~~~~~~~d~~l~~~~~ 320 (737)
........+++++||+||||||| .||||+++|++++........ ..+++.++|++++.+|+
T Consensus 212 ~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 279 (979)
T 3tsy_A 212 EASEVIDSVEISPDDVVALPYSSGTTG------------LPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPM 279 (979)
T ss_dssp GGGGGSCCSCCCTTSEEECCBCCCSSS------------SCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCS
T ss_pred cccccCCcCCCCccceEEEEeCCCCCC------------CCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECch
Confidence 12233467899999999999999 999999999997776655332 24567899999999999
Q ss_pred ccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEE
Q psy8076 321 GWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLF 400 (737)
Q Consensus 321 ~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~ 400 (737)
+|++++...++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|.+.... ...++++||.++
T Consensus 280 ~h~~~~~~~~~~~l~~G~~~v~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~l~~lr~~~ 350 (979)
T 3tsy_A 280 FHIYALNSIMLCGLRVGAAILIMPK-----FEINLLLELIQRCKVTVAPMVPPIVLAIAKSSET----EKYDLSSIRVVK 350 (979)
T ss_dssp SSHHHHHHTHHHHHHHTCEEEECSS-----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGG----GTSCCTTCCEEE
T ss_pred HHHHHHHHHHHHHHhcCcEEEEeCC-----CCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccc----cCCCccceEEEE
Confidence 9999987778899999999999863 6899999999999999999999999999887543 456789999999
Q ss_pred eecCCCCHHHHHHHHHhc-CCcccccccccccccccccccc-cCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccc
Q psy8076 401 VAGEHCDHETKNWAEKSF-NVTMLNHWWQTETGHSITAHCL-GYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAH 478 (737)
Q Consensus 401 ~gGe~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~-~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~ 478 (737)
+|||++++++.+++.+.+ +++++|.||+||+++.++.... .......+. +++|+|+++++ ++
T Consensus 351 ~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~-~~~G~p~~~~~-----~~---------- 414 (979)
T 3tsy_A 351 SGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKS-GACGTVVRNAE-----MK---------- 414 (979)
T ss_dssp ESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCT-TCCCEECSSCE-----EE----------
T ss_pred EcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCC-CCcCcccCCcE-----EE----------
Confidence 999999999999999998 7899999999999976554321 111223334 67888888877 77
Q ss_pred cccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeee
Q psy8076 479 CVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYD 557 (737)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~ 557 (737)
|+| ++|+++++|+.|||+|+|| +++.|||++++.+.+.|. .+|||+
T Consensus 415 ----------------------------i~d~~~~~~~~~g~~GEl~i~g~---~v~~GY~~~p~~t~~~f~--~~g~~~ 461 (979)
T 3tsy_A 415 ----------------------------IVDPDTGDSLSRNQPGEICIRGH---QIMKGYLNNPAATAETID--KDGWLH 461 (979)
T ss_dssp ----------------------------EECTTSCCBCCTTCCEEEEEEST---TSCSEETTCHHHHHHHBC--TTSCEE
T ss_pred ----------------------------EEeCCCCCCCCCCCccEEEEECC---CccccccCChhhhhhhcc--CCCcEE
Confidence 999 5699999999999999999 999999999999988863 378999
Q ss_pred cCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccc
Q psy8076 558 TMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSG 637 (737)
Q Consensus 558 TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~ 637 (737)
|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+++|++++++..++.+++||+..++
T Consensus 462 TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~--------- 532 (979)
T 3tsy_A 462 TGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKD--------- 532 (979)
T ss_dssp EEEEEEECTTSCEEEEEESCC-----------------------------------------------------------
T ss_pred cCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCC---------
Confidence 99999999999999999999999999999999999999999999999999999998889999999987654
Q ss_pred cccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHH
Q psy8076 638 LIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSI 717 (737)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l 717 (737)
. ....++|+++++++|+.|++|+.++++++||+|+|||++|++|
T Consensus 533 ---~---------------------------------~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L 576 (979)
T 3tsy_A 533 ---S---------------------------------ELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDL 576 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---C---------------------------------CCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHH
Confidence 1 1235689999999999999999999999999999999999999
Q ss_pred HHHHcCC
Q psy8076 718 VDMARNK 724 (737)
Q Consensus 718 ~~~~~~~ 724 (737)
++++.++
T Consensus 577 ~~~~~~~ 583 (979)
T 3tsy_A 577 RAKLANG 583 (979)
T ss_dssp -------
T ss_pred HHHHHhh
Confidence 9998764
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-75 Score=657.29 Aligned_cols=479 Identities=21% Similarity=0.309 Sum_probs=383.5
Q ss_pred hhHHHHHHhhhhhccCCC-ceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHH
Q psy8076 76 INACYNAIDRHVERGMAK-KVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLAT 154 (737)
Q Consensus 76 ~n~~~~~l~~~~~~~~pd-~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~ 154 (737)
+.++.++|+++++++ |+ ++|+++.+ +++||+||.++++++|+.|. .|++|+++++|++++++++|||
T Consensus 21 ~~tl~~~l~~~a~~~-p~d~~Al~~~~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~ 88 (505)
T 3nyq_A 21 MSSLFPALSPAPTGA-PADRPALRFGE------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAA 88 (505)
T ss_dssp ---CCTTTSSCCCSG-GGGSEEEEETT------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhC-CCCCeEEEECC------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHH
Confidence 345677888888887 65 99999986 99999999999999998774 3889999999999999999999
Q ss_pred HHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCC
Q psy8076 155 VRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPG 234 (737)
Q Consensus 155 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~ 234 (737)
+++|++++|++|.++.+++.+++++++++++|++...... . ... .... +.+...
T Consensus 89 ~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~-------~-------~~~-~~~~-~~~~~~---------- 142 (505)
T 3nyq_A 89 LLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP-------P-------ALG-ALER-VDVDVR---------- 142 (505)
T ss_dssp HHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC-------G-------GGT-TSEE-EECCTT----------
T ss_pred HHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc-------h-------hhc-cccc-cccccc----------
Confidence 9999999999999999999999999999999998642110 0 000 1111 111000
Q ss_pred CcccHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEE
Q psy8076 235 YDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVW 314 (737)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~ 314 (737)
...........+++++||+||||||| .||||+++|++++....+ +...++++++|++
T Consensus 143 ----------~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~sh~~l~~~~~~-~~~~~~~~~~d~~ 199 (505)
T 3nyq_A 143 ----------ARGAVPEDGADDGDPALVVYTSGTTG------------PPKGAVIPRRALATTLDA-LADAWQWTGEDVL 199 (505)
T ss_dssp ----------CCCCCCCCCCCTTSEEEEEEECCSSS------------SCEEEEEEHHHHHHHHHH-HHHHHTCCTTCEE
T ss_pred ----------cccCCCCCCCCCCCeEEEEeCCCCcC------------CCCeEEEeHHHHHHHHHH-HHHHhCCCCCcEE
Confidence 00111223457789999999999999 999999999886666554 5566899999999
Q ss_pred EEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCC
Q psy8076 315 WTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTD 394 (737)
Q Consensus 315 l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~ 394 (737)
++.+|++|..|+.+.++.+|..|+++++.+ .+++..+++.+ ++++|+++++|+++..|.+...... .....++
T Consensus 200 l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-----~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~l~ 272 (505)
T 3nyq_A 200 VQGLPLFHVHGLVLGILGPLRRGGSVRHLG-----RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADP-ELAKALA 272 (505)
T ss_dssp EECCCTTSHHHHTTTTHHHHHHTCEEEECS-----SCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCH-HHHHHHH
T ss_pred EEeccHHHHHHHHHHHHHHHhcCCEEEECC-----CCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCc-hhhcccc
Confidence 999999999998888999999999999986 37899999999 8999999999999999987432211 0123567
Q ss_pred CccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeecccc
Q psy8076 395 SLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLD 474 (737)
Q Consensus 395 ~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~ 474 (737)
++|.+++||+++++++.+++.+.++.+++|.||+||+++.++... .....+ +++|+|++|++ ++
T Consensus 273 ~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~----~~~~~~-~~vG~p~~~~~-----~~------ 336 (505)
T 3nyq_A 273 GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRA----DGEPRA-GTVGVPLPGVE-----LR------ 336 (505)
T ss_dssp HCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCT----TSCCCT-TCCCEECTTCE-----EE------
T ss_pred cceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCC----CCCCCC-CCcccCCCCCE-----EE------
Confidence 899999999999999999999999999999999999986655432 223334 78899999888 77
Q ss_pred CccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCC---CcceEEEEecCCCCCcccccccChhhhHHhhccC
Q psy8076 475 GRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEP---HELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTK 551 (737)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~---g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~ 551 (737)
|+|++|++++. |+.|||+|+|| +++.|||++++.+.+.|..
T Consensus 337 --------------------------------i~d~~g~~~~~~~~g~~GEl~v~g~---~v~~GY~~~~~~t~~~f~~- 380 (505)
T 3nyq_A 337 --------------------------------LVEEDGTPIAALDGESVGEIQVRGP---NLFTEYLNRPDATAAAFTE- 380 (505)
T ss_dssp --------------------------------EC-----CCCCCCSCCCEEEEEEST---TSCCEETTCHHHHHHTBCT-
T ss_pred --------------------------------EECCCCCCcccCCCCceEEEEEecC---chhhhhCCChhHhhhhhcC-
Confidence 99999999886 89999999999 9999999999999988744
Q ss_pred CCCeeecCceEEEecCceEEEEeec-CCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCC
Q psy8076 552 FPGYYDTMDAGYYDENGYIYVTARD-DDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPL 630 (737)
Q Consensus 552 ~~g~~~TGDl~~~~~dG~l~i~GR~-dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~ 630 (737)
+|||+|||+|++|+||+++|+||+ ||+||++|+||+|.|||++|.+||+|.+|+|++.+++..++.++|+|++.+.
T Consensus 381 -~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~-- 457 (505)
T 3nyq_A 381 -DGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADP-- 457 (505)
T ss_dssp -TSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESST--
T ss_pred -CCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCC--
Confidence 789999999999999999999997 6999999999999999999999999999999999999899999999998763
Q ss_pred CcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCc
Q psy8076 631 DKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSG 710 (737)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sG 710 (737)
. .....++|+++++++||.||+|+.++++++||+|+||
T Consensus 458 ----------~--------------------------------~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~G 495 (505)
T 3nyq_A 458 ----------A--------------------------------APPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMG 495 (505)
T ss_dssp ----------T--------------------------------SCCCHHHHHHHHHHHTCGGGSCSEEEECSCCCC----
T ss_pred ----------C--------------------------------CCCCHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCc
Confidence 0 0113568999999999999999999999999999999
Q ss_pred hhhHHHHHH
Q psy8076 711 KTARKSIVD 719 (737)
Q Consensus 711 Ki~R~~l~~ 719 (737)
|+||++|++
T Consensus 496 Ki~r~~L~~ 504 (505)
T 3nyq_A 496 KIMKRALNR 504 (505)
T ss_dssp ---------
T ss_pred CeeHHhhcc
Confidence 999999986
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-74 Score=646.66 Aligned_cols=494 Identities=18% Similarity=0.240 Sum_probs=381.7
Q ss_pred HHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcC
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLG 158 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 158 (737)
+.++|+++++++ ||++|+++.+ +++||+||+++++++|++|+++ +||+|+|+++|++++++++|||+++|
T Consensus 3 l~~~l~~~a~~~-pd~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~G 72 (501)
T 3ipl_A 3 LDFWLYKQAQQN-GHHIAITDGQ------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLAN 72 (501)
T ss_dssp CCCHHHHHHHHH-TTSEEEECSS------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc-CCceEEEeCC------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 356788999998 9999999876 8999999999999999999987 89999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccc-cccccCCCCcc
Q psy8076 159 AIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCV-EEAELTPGYDI 237 (737)
Q Consensus 159 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~-~~~~~~~~~~~ 237 (737)
++++|+++.++.+++.+++++++++++|++...............+. .+........ ...........
T Consensus 73 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 141 (501)
T 3ipl_A 73 IEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIE-----------FAGRDITTNGLLDNTMGIQYDT 141 (501)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC-----------------------------------
T ss_pred CEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccce-----------eeeeeccccccccccccccccc
Confidence 99999999999999999999999999999876544321111000000 0000000000 00000000000
Q ss_pred cHHHHHhhcC--CCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEE
Q psy8076 238 LWDDALAQRL--SHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWW 315 (737)
Q Consensus 238 ~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l 315 (737)
.......... ........+++++||+||||||| .||||+++|++++..... +...++++++|+++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgv~~th~~~~~~~~~-~~~~~~~~~~d~~l 208 (501)
T 3ipl_A 142 SNETVVPKESPSNILNTSFNLDDIASIMFTSGTTG------------PQKAVPQTFRNHYASAIG-CKESLGFDRDTNWL 208 (501)
T ss_dssp --------CCHHHHTCCCCCTTSEEEEEECCTTTS------------CCCEEEEEHHHHHHHHHH-HHHHTCCCTTCEEE
T ss_pred chhhccccCCcccccccCCCCCCeEEEEECCCCCC------------CCcEEEEeHHHHHHHHHH-HHHhhCCCccCEEE
Confidence 0001110000 01223457899999999999999 999999999887666555 55668999999999
Q ss_pred EecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCC
Q psy8076 316 TASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395 (737)
Q Consensus 316 ~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~ 395 (737)
+.+|++|++|+.. ++.++..|+++++.+. +++..+++.|+++++|++.++|++++.|.+..... ..+
T Consensus 209 ~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------~~~ 275 (501)
T 3ipl_A 209 SVLPIYHISGLSV-LLRAVIEGFTVRIVDK-----FNAEQILTMIKNERITHISLVPQTLNWLMQQGLHE-------PYN 275 (501)
T ss_dssp ECSCTTSHHHHHH-HHHHHHHTCEEEECSS-----CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCS-------CTT
T ss_pred EeCcHHHHHHHHH-HHHHHHcCceEEeCCC-----CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCC-------cCc
Confidence 9999999999655 8899999999999873 68999999999999999999999999998875431 128
Q ss_pred ccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccC
Q psy8076 396 LRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDG 475 (737)
Q Consensus 396 Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~ 475 (737)
||.+++|||++++++.+++.+ ++++++|.||+||+++.++.... ......+ .++|+|+++++ ++
T Consensus 276 lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~--~~~~~~~-~~~G~p~~~~~-----~~------- 339 (501)
T 3ipl_A 276 LQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATP--EMLHARP-DTVGMPSANVD-----VK------- 339 (501)
T ss_dssp CCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECH--HHHHHCT-TCCBEECTTCE-----EE-------
T ss_pred ccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCc--cccccCC-CCCCCCCCCcE-----EE-------
Confidence 999999999999999999987 58999999999999865544322 1112233 68899998888 77
Q ss_pred ccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCe
Q psy8076 476 RAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGY 555 (737)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~ 555 (737)
|+|++ .|+.|||+|+|| +++.|||++++.+.+ |. +||
T Consensus 340 -------------------------------i~d~~-----~~~~GEl~v~g~---~~~~gY~~~~~~t~~--~~--~g~ 376 (501)
T 3ipl_A 340 -------------------------------IKNPN-----KEGHGELMIKGA---NVMNGYLYPTDLTGT--FE--NGY 376 (501)
T ss_dssp -------------------------------EESCC-----SSCCEEEEEEST---TSCSCCSBSTTCCCS--EE--TTE
T ss_pred -------------------------------EecCC-----CCCccEEEEecc---chhhhhCcChhhcch--hc--CCc
Confidence 99976 467899999999 999999999988866 33 799
Q ss_pred eecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCc
Q psy8076 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGF 635 (737)
Q Consensus 556 ~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~ 635 (737)
|+|||+|++|+||+++|+||.||+||++|+||+|.|||++|.+||+|.+|+|++.+++..++.++++++....
T Consensus 377 ~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~------- 449 (501)
T 3ipl_A 377 FNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESD------- 449 (501)
T ss_dssp EEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSC-------
T ss_pred eecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCC-------
Confidence 9999999999999999999999999999999999999999999999999999999999889999999986543
Q ss_pred cccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHH
Q psy8076 636 SGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARK 715 (737)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~ 715 (737)
. ..++|+++++++|+.|++|+.++++++||+|+|||++|+
T Consensus 450 -----~-----------------------------------~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~ 489 (501)
T 3ipl_A 450 -----I-----------------------------------SKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRN 489 (501)
T ss_dssp -----C-----------------------------------CHHHHHHHHHHHSCGGGSCSEEEECSSCC----------
T ss_pred -----C-----------------------------------CHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHH
Confidence 1 256899999999999999999999999999999999999
Q ss_pred HHHHHHcCCC
Q psy8076 716 SIVDMARNKP 725 (737)
Q Consensus 716 ~l~~~~~~~~ 725 (737)
+|++....++
T Consensus 490 ~l~~~~~~~~ 499 (501)
T 3ipl_A 490 KLYREGHHHH 499 (501)
T ss_dssp ----------
T ss_pred HHhhcccccc
Confidence 9999877653
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-73 Score=654.21 Aligned_cols=544 Identities=17% Similarity=0.167 Sum_probs=412.7
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++++++ ||++|+++.+ .+..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 12 tl~~~l~~~a~~~-p~~~a~~~~~--~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 88 (590)
T 3kxw_A 12 SLVDVVRLRALHS-PNKKSCTFLN--KELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYA 88 (590)
T ss_dssp SHHHHHHHHHHHC-TTSEEEEEEE--TTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHhC-CCCeEEEEEc--CCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHh
Confidence 4788999999998 9999999864 234589999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCC---CHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHH-HhcCCCCCeEEEEecccccccccCC
Q psy8076 158 GAIHSVVFGGF---AARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEAL-EISSCKPDYCIIFQRRCVEEAELTP 233 (737)
Q Consensus 158 G~~~vpl~~~~---~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~viv~~~~~~~~~~~~~ 233 (737)
|++++|++|.+ +.+++.++++++++++++++.... ..+.... ...+ ....+..+...
T Consensus 89 G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~--------- 149 (590)
T 3kxw_A 89 GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHI---------KKFTADELNTNP-KFLKIPAIALE--------- 149 (590)
T ss_dssp TCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHH---------HHHCC-----CC-EETTEEEEEGG---------
T ss_pred CcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHH---------HHHHHhhhhhcc-cccccceeech---------
Confidence 99999999988 457899999999999999975421 1111000 1111 11111111110
Q ss_pred CCcccHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcE
Q psy8076 234 GYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDV 313 (737)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~ 313 (737)
.+.. ............+++++||+||||||| .||||+++|++++....+ +...++++++|+
T Consensus 150 --~~~~----~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~th~~l~~~~~~-~~~~~~~~~~d~ 210 (590)
T 3kxw_A 150 --SIEL----NRSSSWQPTSIKSNDIAFLQYTSGSTM------------HPKGVMVSHHNLLDNLNK-IFTSFHMNDETI 210 (590)
T ss_dssp --GCCG----GGGGGCCCCCCCTTSEEEEEECSSCSS------------SCCEEEEEHHHHHHHHHH-HHHHTTCCTTCE
T ss_pred --hccc----cccccCCCCCCCCCCeEEEEeCcCCCC------------CceEEEeeHHHHHHHHHH-HHHhhCCCCcCe
Confidence 0000 001112234567899999999999999 999999999987766665 455689999999
Q ss_pred EEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCC
Q psy8076 314 WWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYST 393 (737)
Q Consensus 314 ~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l 393 (737)
+++++|++|++|+...++.+|+.|+++++.+.... ..++..+++.|+++++|++.++|+++..+.+...... ....++
T Consensus 211 ~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-~~~~~l 288 (590)
T 3kxw_A 211 IFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSF-LQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEK-KEGLDL 288 (590)
T ss_dssp EEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHH-HHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGG-GTTCCC
T ss_pred EEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHH-HHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhh-ccCCCc
Confidence 99999999999977668999999999999764111 1178999999999999999999999999887633211 145578
Q ss_pred CCccEEEeecCCCCHHHHHHHHHhcC------CcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCccee
Q psy8076 394 DSLRYLFVAGEHCDHETKNWAEKSFN------VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNI 467 (737)
Q Consensus 394 ~~Lr~i~~gGe~l~~~~~~~~~~~~~------~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~ 467 (737)
++||.+++|||++++++.++|.+.++ ..++|.||+||+++.++...... .... .....
T Consensus 289 ~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~---~~~~-~~~~~------------ 352 (590)
T 3kxw_A 289 SSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGS---SYKT-LTLAK------------ 352 (590)
T ss_dssp TTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTS---CCCE-EEECS------------
T ss_pred hhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCC---Ccee-eeecH------------
Confidence 99999999999999999999998873 36999999999998766543210 0000 00000
Q ss_pred eeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCC-CCccCCCcceEEEEecCCCCCcccccccChhhhHH
Q psy8076 468 VMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRND-GSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMK 546 (737)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~-g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~ 546 (737)
.....+.+.............+..|.|.++ ++|+|++ +++++.|+.|||+|+|| +++.|||++++.+.+
T Consensus 353 -----~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~---~v~~GY~~~p~~t~~ 422 (590)
T 3kxw_A 353 -----EQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSN---SVAKGYWNQPEETRH 422 (590)
T ss_dssp -----CCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEEEEST---TSCCCBTTCHHHHHH
T ss_pred -----HHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCC---cccccccCChhHHHH
Confidence 000000011111111112223455666666 6699976 89999999999999999 999999999999998
Q ss_pred hhccC------CCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHH-hcCCCcc--eeEEecccCCCCCc
Q psy8076 547 IYFTK------FPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVV-LSHPDVG--DTAVIGVPEPTKGE 617 (737)
Q Consensus 547 ~~~~~------~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l-~~~p~V~--~a~vv~~~~~~~~~ 617 (737)
.|... ..+||+|||+|++| ||+|+|+||+||+||++|+||+|.|||++| ..+|.|. +|+|++++++. ++
T Consensus 423 ~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~ 500 (590)
T 3kxw_A 423 AFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EY 500 (590)
T ss_dssp HHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EE
T ss_pred HHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-Cc
Confidence 87542 22399999999999 999999999999999999999999999999 7789998 89999998875 67
Q ss_pred ceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCC-ceeee
Q psy8076 618 IPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGP-IAAFK 696 (737)
Q Consensus 618 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~p~ 696 (737)
.++++++..+. .......++|+++++++++. +++|.
T Consensus 501 ~~~~~v~~~~~-------------------------------------------~~~~~~~~~l~~~l~~~l~~~~~~p~ 537 (590)
T 3kxw_A 501 KLTVMCEVKNR-------------------------------------------FMDDVAQDNLFNEIFELVYENHQLEV 537 (590)
T ss_dssp EEEEEEEESCT-------------------------------------------TCCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred eEEEEEEeccc-------------------------------------------cccchhHHHHHHHHHHHHHHHcCCce
Confidence 88899988765 11233455666777776664 55654
Q ss_pred ---eEEEcCCCCCCCCchhhHHHHHHHHcCCCCCchhhhhcc
Q psy8076 697 ---LSTSVTGLPRTRSGKTARKSIVDMARNKPLRVRLVYLQQ 735 (737)
Q Consensus 697 ---~~~~v~~lP~t~sGKi~R~~l~~~~~~~~~~~~~~~~~~ 735 (737)
.++.+++||+|++||++|++|++++.++.+.....|-++
T Consensus 538 ~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~~~~~~~~~~~~ 579 (590)
T 3kxw_A 538 HTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKTLPIVATWQLN 579 (590)
T ss_dssp CEEEEEETTCSCCCSCHHHHHHHHHHHHHHTCSCCSEEEETT
T ss_pred eEEEEECCCccCcCCCcHHHHHHHHHHHHcCCCceeeeeccc
Confidence 444558999999999999999999999988876655443
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-72 Score=645.73 Aligned_cols=512 Identities=15% Similarity=0.133 Sum_probs=309.4
Q ss_pred HHHHHhhhhhccCCCceEEEEeCC----CCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHH
Q psy8076 79 CYNAIDRHVERGMAKKVALIHDSP----VTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLAT 154 (737)
Q Consensus 79 ~~~~l~~~~~~~~pd~~Al~~~~~----~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~ 154 (737)
+.++|+++++++ ||++|+++.+. ..+..+++||+||+++++++|+.|.+.|+ +||+|+|+++|++++++++|||
T Consensus 22 l~~~l~~~a~~~-p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~ 99 (562)
T 3ite_A 22 PSHYIETWAKTH-PEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGI 99 (562)
T ss_dssp TTHHHHHHHHHC-TTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHH
Confidence 578999999998 99999997642 12335899999999999999999999999 7999999999999999999999
Q ss_pred HHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCC
Q psy8076 155 VRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPG 234 (737)
Q Consensus 155 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~ 234 (737)
+++|++++|+++.++.+++.+++++++++++|+++....... .+ ....+ +..
T Consensus 100 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~--------------~~-~~~~~--~~~----------- 151 (562)
T 3ite_A 100 MKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE--------------LP-PETKV--LDT----------- 151 (562)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC--------------CC-TTCEE--EET-----------
T ss_pred HHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc--------------cC-cccee--ecc-----------
Confidence 999999999999999999999999999999999875432110 00 01111 111
Q ss_pred CcccHHHHHhhcCC-CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHh-------hhh
Q psy8076 235 YDILWDDALAQRLS-HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMS-------VIY 306 (737)
Q Consensus 235 ~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~-------~~~ 306 (737)
....+.+....... .......+++++||+||||||| .||||+++|++++........ ..+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~ 219 (562)
T 3ite_A 152 KNQSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTG------------TPKGVRVSRHNLSSFSDAWGKLIGNVAPKSL 219 (562)
T ss_dssp TCHHHHHHHHHSCCSCCCCCCCTTSEEEEEEECC---------------CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred cchhhhhhcccccccccccCCCCCCcEEEEECCCCCC------------CCcEEEECchhHHHHHHHHHhhhccccchhc
Confidence 01122222222222 2233456788999999999999 999999999887665543222 124
Q ss_pred cCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCc
Q psy8076 307 NMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDST 386 (737)
Q Consensus 307 ~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~ 386 (737)
.+...+++++..++.|+.+. ..++.++..|+++++.+. ...+..+++.++++++|++.++|++++.+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~------ 288 (562)
T 3ite_A 220 ELGGVGKFLCLASRAFDVHI-GEMFLAWRFGLCAVTGER----LSMLDDLPRTFRELGVTHAGIVPSLLDQTGL------ 288 (562)
T ss_dssp GCTTTCEEECCSCTTSTHHH-HHHHHHHHTTCEEEECCH----HHHHHSHHHHHHHTTCCEEEECHHHHHHHTC------
T ss_pred ccCcCceEEEecCchhhhhH-HHHHHHHhcccEEEecch----hhCHHHHHHHHHHcCCCEEEcCHHHHhhccc------
Confidence 57888999999999999884 558889999999998653 1235678999999999999999999887643
Q ss_pred cccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcce
Q psy8076 387 LGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVN 466 (737)
Q Consensus 387 ~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~ 466 (737)
...++++||.+++||+++++++.++|.+.+++.++|.||+||+++.++.... ...... .++|+|++++.
T Consensus 289 --~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~---~~~~~~-~~~G~p~~~~~----- 357 (562)
T 3ite_A 289 --VPEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRI---LPDSDT-RCIGHPLGDSV----- 357 (562)
T ss_dssp --CGGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEEC---CTTSCT-TEEEEECTTCE-----
T ss_pred --CccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeee---cCCCCC-ccccccCCCCe-----
Confidence 2336789999999999999999999999889999999999999876665433 122233 67889988888
Q ss_pred eeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcC-CCCccCCCcceEEEEecCCCCCcccccccChhhhH
Q psy8076 467 IVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRN-DGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFM 545 (737)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~-~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~ 545 (737)
++ |+|+ +++++++|+.|||+|+|| +++.|||++++.+.
T Consensus 358 ~~--------------------------------------i~d~~~~~~~~~g~~GEl~v~g~---~v~~GY~~~p~~t~ 396 (562)
T 3ite_A 358 AH--------------------------------------VLAPGSNEHVKKGMAGELVIEGS---LVANGYLNRPDAKG 396 (562)
T ss_dssp EE--------------------------------------EECTTSSCBCCTTSCEEEEEEST---TSCCEESSCTTCCS
T ss_pred EE--------------------------------------EEeCCCCCCCCCCCceEEEEecc---ccchhhCCCccccc
Confidence 77 9995 588899999999999999 99999999998776
Q ss_pred HhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcC-CCcceeEEecccCCCCCcceEEEEE
Q psy8076 546 KIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSH-PDVGDTAVIGVPEPTKGEIPFCLYI 624 (737)
Q Consensus 546 ~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~-p~V~~a~vv~~~~~~~~~~~~a~v~ 624 (737)
..+ .+.++||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+| |.+.+++|++.+++..++..+++++
T Consensus 397 ~~~-~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v 475 (562)
T 3ite_A 397 FCD-INGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFV 475 (562)
T ss_dssp EEE-ETTEEEEEEEEEEEECTTSCEEEEEEC-------------------------------------------------
T ss_pred ccc-CCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEE
Confidence 442 32234999999999999999999999999999999999999999999998 8889999999988877776666665
Q ss_pred eecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCC
Q psy8076 625 KKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGL 704 (737)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~l 704 (737)
........ +. ..........+.++|+++|+++||.||+|+.|+++++|
T Consensus 476 ~~~~~~~~-------~~-------------------------~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~l 523 (562)
T 3ite_A 476 ASSGAAVR-------GE-------------------------LRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFI 523 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eccccccc-------cc-------------------------ccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccC
Confidence 54330000 00 00000112345678999999999999999999999999
Q ss_pred CCC-CCchhhHHHHHHHHcCCCCCc
Q psy8076 705 PRT-RSGKTARKSIVDMARNKPLRV 728 (737)
Q Consensus 705 P~t-~sGKi~R~~l~~~~~~~~~~~ 728 (737)
|+| ++||+||++|++++.+....+
T Consensus 524 P~t~~~GKi~r~~L~~~~~~~~~~~ 548 (562)
T 3ite_A 524 PLRDTSAKTDAKALEHMFHTLSLGE 548 (562)
T ss_dssp -------------------------
T ss_pred CCCCCCCcchHHHHHHHHhccCHHH
Confidence 998 999999999999998655433
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-57 Score=510.51 Aligned_cols=424 Identities=17% Similarity=0.173 Sum_probs=310.4
Q ss_pred HHHHHHhhhhhccCCCceEEEEeC---CCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHH
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDS---PVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLAT 154 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~---~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~ 154 (737)
++.++|+++++++ ||++|+++.+ ...+..+++||+||.++++++|++|+++|+ +||+|+|+++|++++++++|||
T Consensus 25 tl~~~l~~~a~~~-pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~ 102 (480)
T 3t5a_A 25 SLPAALRACARLQ-PHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGA 102 (480)
T ss_dssp CHHHHHHHHHHHS-TTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHhC-CCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHH
Confidence 4789999999998 9999999875 223445899999999999999999999996 9999999999999999999999
Q ss_pred HHcCCEEEecCC---CCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCC-CCCeEEEEecccccccc
Q psy8076 155 VRLGAIHSVVFG---GFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSC-KPDYCIIFQRRCVEEAE 230 (737)
Q Consensus 155 ~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~viv~~~~~~~~~~ 230 (737)
+++|+++||+++ .++.+++.+++++++++++|++.... ..+.+.....+. ....++.+...
T Consensus 103 ~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~------ 167 (480)
T 3t5a_A 103 LQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAV---------DDVVQHVARRPGESPPSIIEVDLL------ 167 (480)
T ss_dssp HHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTH---------HHHHHTCC------CCEEEEGGGS------
T ss_pred HHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHH---------HHHHHHHhccccccccceeEeccc------
Confidence 999999999999 78899999999999999999987532 222221111110 01122221110
Q ss_pred cCCCCcccHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCC
Q psy8076 231 LTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQ 310 (737)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~ 310 (737)
.. ............+++++||+||||||| .||||+++|++++.+..+ +...+++..
T Consensus 168 --~~---------~~~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~th~~l~~~~~~-~~~~~~~~~ 223 (480)
T 3t5a_A 168 --DL---------DAPNGYTFKEDEYPSTAYLQYTSGSTR------------TPAGVVMSHQNVRVNFEQ-LMSGYFADT 223 (480)
T ss_dssp --CT---------TCC---CCCCSSCCSEEEEECC------------------CCCEEEEHHHHHHHHHH-HHHHHCTTT
T ss_pred --cc---------ccccCCCCCCCCCCceEEEEecCCCCC------------CCcEEEEeHHHHHHHHHH-HHHHhcccc
Confidence 00 000112234467889999999999999 999999999987766655 344567776
Q ss_pred ------CcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCC
Q psy8076 311 ------DDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKD 384 (737)
Q Consensus 311 ------~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~ 384 (737)
+|++++.+|++|++|+.+.++.+|+.|+++++.+.... ..++..+++.++++++| +.++|+++..+......
T Consensus 224 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~-~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~ 301 (480)
T 3t5a_A 224 DGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSF-LQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT 301 (480)
T ss_dssp TTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHH-HHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC
T ss_pred ccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHH-HHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC
Confidence 99999999999999988788999999999999763110 13789999999999999 78888888877764322
Q ss_pred CccccCCCCCCccEEEeecCCCCHHHHHHHHHhcC------CcccccccccccccccccccccCCCCCCC---CCCccCC
Q psy8076 385 STLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFN------VTMLNHWWQTETGHSITAHCLGYQHDTVP---PKYSTGL 455 (737)
Q Consensus 385 ~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~------~~i~~~YG~TE~~~~~~~~~~~~~~~~~~---~~~~~G~ 455 (737)
.......++++||.+++|||++++++.++|.+.++ ..++|.||+||+++.++............ .....|.
T Consensus 302 ~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 381 (480)
T 3t5a_A 302 DDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGH 381 (480)
T ss_dssp TGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTB
T ss_pred cccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCc
Confidence 11124567899999999999999999999999884 36999999999998776643211000000 0000011
Q ss_pred CcCCCCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCC-CCccCCCcceEEEEecCCCCCcc
Q psy8076 456 PFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRND-GSECEPHELGRIVVKLPLPPGTM 534 (737)
Q Consensus 456 p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~-g~~~~~g~~GEL~i~g~~~~~~~ 534 (737)
+.+... ......+..|.+.+ ++++|+|++ |++||.|+.|||+|+|| +++
T Consensus 382 ~~~~~~--------------------------~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~---~v~ 431 (480)
T 3t5a_A 382 AKPCAG--------------------------GGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGD---NVA 431 (480)
T ss_dssp CCCCCS--------------------------SSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEEST---TSC
T ss_pred eeecCC--------------------------CCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeCC---ccc
Confidence 110000 00111234455555 666699976 89999999999999999 999
Q ss_pred cccccChhhhHHhhcc---------CCCCeeecCceEEEecCceEEEEee
Q psy8076 535 STLYKAPQRFMKIYFT---------KFPGYYDTMDAGYYDENGYIYVTAR 575 (737)
Q Consensus 535 ~gy~~~~~~~~~~~~~---------~~~g~~~TGDl~~~~~dG~l~i~GR 575 (737)
.|||++++.|.+.|.. ..+|||+|||+|+++ ||+|+|+||
T Consensus 432 ~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 432 NGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp CCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred cccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 9999999999998841 146799999999997 999999998
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-53 Score=455.43 Aligned_cols=316 Identities=16% Similarity=0.193 Sum_probs=263.8
Q ss_pred CCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccccchhhhhhhccc
Q psy8076 256 ANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLA 335 (737)
Q Consensus 256 ~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~ 335 (737)
.|++|||+||||||| .||||+++|++++.+..+ +...++++++|++++++|++|++|+.. ++.++.
T Consensus 36 ~d~~a~Il~TSGTTG------------~PKgV~~th~~l~~~~~~-~~~~~~~~~~d~~l~~~pl~h~~gl~~-~~~~l~ 101 (358)
T 4gs5_A 36 GGAREFVLHTSGSTG------------MPKPITVTRAQLAASAAM-TGKALSLGPGTRALVCLNVGYIAGLMM-LVRGME 101 (358)
T ss_dssp HTCSEEEEEEECTTS------------SEEEEEEEHHHHHHHHHH-HHHHTTCCTTCEEEECSCTTSHHHHHH-HHHHHH
T ss_pred CCCCEEEEECCcccc------------cCcEEEEeHHHHHHHHHH-HHHHhCCCCCCEEEEECChHHHHHHHH-HHHHHH
Confidence 478999999999999 999999999887666554 566789999999999999999999654 788999
Q ss_pred cCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHH
Q psy8076 336 AGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAE 415 (737)
Q Consensus 336 ~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~ 415 (737)
.|+++++.+.. .+ +++.|+++++|++.++|++++.|.+.... ..++++||.+++||+++++++.+++.
T Consensus 102 ~g~~~~~~~~~----~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-----~~~l~~lr~v~~gG~~l~~~~~~~~~ 169 (358)
T 4gs5_A 102 LDWELTVTEPT----AN---PLAGLDHADFDFVAMVPMQLQSILENSAT-----SGQVDRLGKVLLGGAPVNHALAMQIS 169 (358)
T ss_dssp HTCEEEEECCC----SC---TTTTCSSCCCSEEEECHHHHHHHHHCTTT-----GGGGGGGCSEEECSSCCCHHHHHHHH
T ss_pred hCcEEEecCcc----cc---HHHHHHHhCCeEEEcChHHHHHhhccccc-----cccCCcceEEEEcccCCCchheeccc
Confidence 99999998642 22 35678899999999999999999886543 33688999999999999999999998
Q ss_pred HhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCCC
Q psy8076 416 KSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQ 495 (737)
Q Consensus 416 ~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (737)
+ ++.+++|.||+||+++.++....+ .... +.+|.|.||+. +.
T Consensus 170 ~-~~~~~~~~YG~TEt~~~~~~~~~~----~~~~-g~~~~~~pgv~-----~~--------------------------- 211 (358)
T 4gs5_A 170 D-LAMPVYQSYGMTETVSHVALKALN----GPEA-SELYVFLPGIQ-----YG--------------------------- 211 (358)
T ss_dssp T-CSSCEEEEEECGGGSSEEEEEECS----STTC-CSCEEECTTCE-----EE---------------------------
T ss_pred c-cCceEEeccccccccceeeccccc----cccc-ceeeccCCCeE-----EE---------------------------
Confidence 6 589999999999999877665431 1122 56666666655 33
Q ss_pred CCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEEEee
Q psy8076 496 NATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTAR 575 (737)
Q Consensus 496 ~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR 575 (737)
+ ++.|||+++|++ . .+|||+|||+|++|+|| ++|+||
T Consensus 212 -----------~----------~~~Gel~~~g~~---~------------------~~g~~~TGDlg~~d~~g-~~~~GR 248 (358)
T 4gs5_A 212 -----------V----------DERGCLHISGAV---T------------------NGQTVQTNDLVEIHGNA-FQWIGR 248 (358)
T ss_dssp -----------E----------CTTSEEEEESGG---G------------------TTCCEEEEEEEEECSSE-EEEEEE
T ss_pred -----------e----------cCcCceEEeccc---c------------------cCcceecCCccccccCc-eEEccc
Confidence 3 345999999872 1 27899999999999988 677899
Q ss_pred cCCeEeeCcEEechHHHHHHH---hcCCCcceeEEe-cccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccC
Q psy8076 576 DDDVINVAGHRLSTSALEDVV---LSHPDVGDTAVI-GVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLL 651 (737)
Q Consensus 576 ~dd~Ik~~G~rv~~~eIE~~l---~~~p~V~~a~vv-~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (737)
+||+||++|+||+|.|||++| .+||.|.+|+|+ +.+++..|+.++|+|+....
T Consensus 249 ~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~----------------------- 305 (358)
T 4gs5_A 249 ADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP----------------------- 305 (358)
T ss_dssp GGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC-----------------------
T ss_pred ccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC-----------------------
Confidence 999999999999999999877 458999998887 67788888999998876543
Q ss_pred CCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHHHcCC
Q psy8076 652 TNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNK 724 (737)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~~ 724 (737)
+...++|+++|+++|+.|++|+.|+++++||+|++||+||++|++.+.+.
T Consensus 306 -----------------------~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 306 -----------------------EALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp -----------------------HHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred -----------------------CcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence 44667899999999999999999999999999999999999999998764
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-48 Score=427.71 Aligned_cols=333 Identities=17% Similarity=0.173 Sum_probs=263.6
Q ss_pred cccC-CCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHH--HhhhhcCCCCcEEEEecccccccchhhh
Q psy8076 253 PVEA-NDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWT--MSVIYNMGQDDVWWTASDMGWVVGHSYI 329 (737)
Q Consensus 253 ~~~~-~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~--~~~~~~~~~~d~~l~~~~~~~~~g~~~~ 329 (737)
..++ +++++++||||||| .||||+++|+++....... ....++++++|++++.+|++|..+....
T Consensus 81 ~~~~~~~~a~i~~TSGTTG------------~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 148 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTG------------NPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGF 148 (436)
T ss_dssp CSCHHHHEEEEEECSCSSS------------CCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHH
T ss_pred cCCCcCCeEEEEECCCcCC------------CCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHH
Confidence 4556 88999999999999 9999999998865544332 1234688999999999999877776666
Q ss_pred hhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHH
Q psy8076 330 CYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHE 409 (737)
Q Consensus 330 ~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~ 409 (737)
++.++..|+++++.+. .++..+++.|+++++|+++++|+++..|.+...... ...++++||.+++|||+++++
T Consensus 149 ~~~~l~~G~~~~~~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~~~lr~i~~gGe~l~~~ 221 (436)
T 3qov_A 149 QYGAERLGCLTVPAAA-----GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEG--IDPRETTLKTLVIGAEPHTDE 221 (436)
T ss_dssp HHHHHHHTCEEECCCS-----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTT--CCTTSSSCCEEEEESSCCCHH
T ss_pred HHHHHHcCCEEEeCCC-----CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcC--CCcccCCccEEEEeCCcCCHH
Confidence 7889999999998763 589999999999999999999999999987643211 222478999999999999999
Q ss_pred HHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcccccccccccccc
Q psy8076 410 TKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRK 489 (737)
Q Consensus 410 ~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (737)
+.+++.+.+|++++|.||+||+++..+.... .. . ...+.|.+++. ++
T Consensus 222 ~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~-----~~-~-~g~~~~~~~~~-----v~--------------------- 268 (436)
T 3qov_A 222 QRRKIERMLNVKAYNSFGMTEMNGPGVAFEC-----QE-Q-NGMHFWEDCYL-----VE--------------------- 268 (436)
T ss_dssp HHHHHHHHHTSEEEEEEEEGGGTEEEEEEEC-----TT-C-SSEEECTTTEE-----EE---------------------
T ss_pred HHHHHHHHhCccEEecCcchhhcCCeeEEec-----CC-C-CeeEEccCceE-----EE---------------------
Confidence 9999999999999999999999655332211 00 1 22445555655 55
Q ss_pred CCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCc
Q psy8076 490 NVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENG 568 (737)
Q Consensus 490 ~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG 568 (737)
|+| ++|+++++|+.|||+|+|+. . .. + ..+||+|||+|+++++|
T Consensus 269 -----------------i~d~~~g~~~~~g~~Gel~v~~~~---~------------~~-~--~~~~y~TGDl~~~~~~g 313 (436)
T 3qov_A 269 -----------------IIDPETGEPVPEGEIGELVLTTLD---R------------EM-M--PLIRYRTRDLTRILPGK 313 (436)
T ss_dssp -----------------EECTTTCSBCSTTCCEEEEEEESS---C------------CS-S--CCCSEEEEEEECEECSC
T ss_pred -----------------EEECCCCCCCCCCCceEEEEeccC---c------------CC-c--eEEEEEcCCEEEEcCCC
Confidence 999 78999999999999999861 1 01 1 26899999999999998
Q ss_pred ------e---EEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccc
Q psy8076 569 ------Y---IYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLI 639 (737)
Q Consensus 569 ------~---l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~ 639 (737)
+ ++|+||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++.++++|+++ +
T Consensus 314 c~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~----------- 381 (436)
T 3qov_A 314 CPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-D----------- 381 (436)
T ss_dssp CTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-T-----------
T ss_pred CCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-C-----------
Confidence 5 699999999999999999999999999999999999999999888888999999998 5
Q ss_pred cccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCc-eeeeeEEEcC--CCCCCCCchhhHH
Q psy8076 640 GFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPI-AAFKLSTSVT--GLPRTRSGKTARK 715 (737)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~p~~~~~v~--~lP~t~sGKi~R~ 715 (737)
.. .......+++++.+++.|+.+ ++|..+.+++ +||+|+ ||++|.
T Consensus 382 -~~-----------------------------~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 382 -LS-----------------------------TDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp -TC-----------------------------CCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CE
T ss_pred -cc-----------------------------ccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence 11 122233556777777777777 8899999998 999999 999985
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=415.12 Aligned_cols=336 Identities=17% Similarity=0.133 Sum_probs=265.5
Q ss_pred ccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHH--HhhhhcCCCCcEEEEecccc-cccchhh
Q psy8076 252 VPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWT--MSVIYNMGQDDVWWTASDMG-WVVGHSY 328 (737)
Q Consensus 252 ~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~--~~~~~~~~~~d~~l~~~~~~-~~~g~~~ 328 (737)
....++++++++||||||| .||||+++|+++....... ....++++++|++++..|++ |..+ ..
T Consensus 87 ~~~~~~~~~~i~~TSGTTG------------~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~ 153 (443)
T 2y4o_A 87 FAVPREQVVRVHASSGTTG------------KPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGG-LG 153 (443)
T ss_dssp CSSCGGGCCEEEEECCSSS------------SCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHH-HH
T ss_pred cCCChhheEEEEECCCCCC------------CceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccH-HH
Confidence 3457789999999999999 9999999998865544322 22357889999999999985 4444 44
Q ss_pred hhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCH
Q psy8076 329 ICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDH 408 (737)
Q Consensus 329 ~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~ 408 (737)
.++.++..|+++++.+. .++..+++.|+++++|++.++|+++..|.+...... ....+++||.+++|||++++
T Consensus 154 ~~~~~~~~G~~~~~~~~-----~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~--~~~~~~~lr~i~~gGe~l~~ 226 (443)
T 2y4o_A 154 IHYGAERLGCMVVPMSG-----GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQG--MDPAESSLKIGIFGAEPWTQ 226 (443)
T ss_dssp HHHHHHHHTCEEECCCS-----CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTT--CCGGGSSCCEEEEESSCCCH
T ss_pred HHHHHHHcCCEEEECCC-----CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcC--CCcccCCceEEEECCCcCCH
Confidence 57889999999988763 589999999999999999999999999987532210 11124799999999999999
Q ss_pred HHHHHHHHhcCCcccccccccccccc-cccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcccccccccccc
Q psy8076 409 ETKNWAEKSFNVTMLNHWWQTETGHS-ITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESL 487 (737)
Q Consensus 409 ~~~~~~~~~~~~~i~~~YG~TE~~~~-~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (737)
++.+++.+.+|++++|.||+||+++. ++..+. . .. ...+.|.+++. ++
T Consensus 227 ~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~---~---~~-~g~~~~~~~~~-----~~------------------- 275 (443)
T 2y4o_A 227 ALRNEVETRVGIDALDIYGLSEVMGPGVACECV---E---TK-DGPVIWEDHFY-----PE------------------- 275 (443)
T ss_dssp HHHHHHHHHHTCEEEEEEEETTTTEEEEEEECT---T---TC-CSEEECTTTEE-----EE-------------------
T ss_pred HHHHHHHHHhCcCEEeccCchhhcCCeEEeccC---C---CC-CceEEccCCeE-----EE-------------------
Confidence 99999999999999999999998543 333221 0 00 01233445555 55
Q ss_pred ccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEec
Q psy8076 488 RKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDE 566 (737)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~ 566 (737)
|+| ++|+++|+|+.|||+|+|.. . +.+ ..+||+|||+|++++
T Consensus 276 -------------------i~d~~~g~~~~~G~~Gel~v~~~t---~------------~~~---p~~~y~TGDl~~~~~ 318 (443)
T 2y4o_A 276 -------------------IIDPVTGEVLPDGSQGELVFTSLT---K------------EAM---PVIRYRTRDLTALLP 318 (443)
T ss_dssp -------------------EECTTTCCBCCTTCCEEEEEEESS---C------------SSS---CCSSEEEEEEECEEC
T ss_pred -------------------EEcCCCCCCCCCCCceEEEEeCCC---c------------ccC---hhheeecCCEEEEcC
Confidence 999 46999999999999999851 1 111 267999999999999
Q ss_pred C-ceE-----EEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeec--CCCCcCCcccc
Q psy8076 567 N-GYI-----YVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKR--IPLDKMGFSGL 638 (737)
Q Consensus 567 d-G~l-----~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~--~~~~~~~~~~~ 638 (737)
+ |++ +|+||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++.++++|++.+ +
T Consensus 319 ~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~---------- 388 (443)
T 2y4o_A 319 PTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAA---------- 388 (443)
T ss_dssp CSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHH----------
T ss_pred CCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCccc----------
Confidence 9 987 899999999999999999999999999999999999999888767788999999875 2
Q ss_pred ccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCce-eeeeEEEc--CCCCCCCCchhhHH
Q psy8076 639 IGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIA-AFKLSTSV--TGLPRTRSGKTARK 715 (737)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~p~~~~~v--~~lP~t~sGKi~R~ 715 (737)
. .......++++++|+++|+.++ +|..+.++ ++||+|++||++|+
T Consensus 389 --~------------------------------~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~ 436 (443)
T 2y4o_A 389 --A------------------------------SVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRV 436 (443)
T ss_dssp --T------------------------------TCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSE
T ss_pred --c------------------------------cchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEE
Confidence 0 0112345678888888888774 88877777 59999999999986
Q ss_pred HH
Q psy8076 716 SI 717 (737)
Q Consensus 716 ~l 717 (737)
..
T Consensus 437 ~~ 438 (443)
T 2y4o_A 437 ID 438 (443)
T ss_dssp EE
T ss_pred Ee
Confidence 43
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-46 Score=410.77 Aligned_cols=334 Identities=16% Similarity=0.151 Sum_probs=265.1
Q ss_pred ccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHH--HhhhhcCCCCcEEEEecccc-cccchhh
Q psy8076 252 VPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWT--MSVIYNMGQDDVWWTASDMG-WVVGHSY 328 (737)
Q Consensus 252 ~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~--~~~~~~~~~~d~~l~~~~~~-~~~g~~~ 328 (737)
....++++++++||||||| .||||+++|+++....... ....++++++|++++..|++ |..+ ..
T Consensus 85 ~~~~~~~~~~i~~TSGTTG------------~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~ 151 (437)
T 2y27_A 85 FAVPQDRISRIHASSGTTG------------KPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGG-LG 151 (437)
T ss_dssp CSSCGGGCCEEEECCCTTS------------SCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHH-HH
T ss_pred ccCChhHeEEEEECCCCCC------------CceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccc-hH
Confidence 3456789999999999999 9999999998865544322 22357889999999999984 5555 34
Q ss_pred hhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCH
Q psy8076 329 ICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDH 408 (737)
Q Consensus 329 ~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~ 408 (737)
.++.++..|+++++.+. .++..+++.|+++++|+++++|+++..|.+...... ...++++||.+++|||++++
T Consensus 152 ~~~~~~~~G~~~~~~~~-----~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~--~~~~~~~lr~i~~gGe~l~~ 224 (437)
T 2y27_A 152 AHYGAERAGLTVIPFGG-----GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQG--LDPVQSSLRIGIFGAEPWTN 224 (437)
T ss_dssp HHHHHHHTTCEEECCCS-----CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTT--CCGGGSSCCEEEEESSCCCH
T ss_pred HHHHHHHcCCEEEeCCC-----CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcC--CCcccCCeeEEEEcCccCCH
Confidence 47889999999987653 589999999999999999999999999987532210 11124789999999999999
Q ss_pred HHHHHHHHhcCCcccccccccccccc-cccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcccccccccccc
Q psy8076 409 ETKNWAEKSFNVTMLNHWWQTETGHS-ITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESL 487 (737)
Q Consensus 409 ~~~~~~~~~~~~~i~~~YG~TE~~~~-~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (737)
++.+++.+.+|++++|.||+||+++. ++..+. . .. ...+.|.+++. ++
T Consensus 225 ~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~---~---~~-~g~~~~~~~~~-----~~------------------- 273 (437)
T 2y27_A 225 DMRVAIEQRMGIDAVDIYGLSEVMGPGVASECV---E---TK-DGPTIWEDHFY-----PE------------------- 273 (437)
T ss_dssp HHHHHHHHHHTSEEEEEEEETTTTEEEEEECCT---T---TC-SSCEECTTTEE-----EE-------------------
T ss_pred HHHHHHHHHHCcCEEecCCchhhcCCeeEEecC---C---CC-CceeEccCceE-----EE-------------------
Confidence 99999999899999999999998543 333221 0 00 11333445555 55
Q ss_pred ccCCCCCCCCcccccceEEEEcC-CCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEec
Q psy8076 488 RKNVPKGQNATHFTSVEVRIIRN-DGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDE 566 (737)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~Ivd~-~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~ 566 (737)
|+|+ +|+++|.|+.|||+|+|. .. +.+ ..+||+|||+|++++
T Consensus 274 -------------------i~d~~~g~~~~~g~~Gel~v~~~---t~------------~~~---~~~~y~TGDl~~~~~ 316 (437)
T 2y27_A 274 -------------------IIDPETGEVLPDGELGELVFTSL---TK------------EAL---PIIRYRTRDLTRLLP 316 (437)
T ss_dssp -------------------EECTTTCCBCCTTCCEEEEEEES---SC------------SSS---CCCSEEEEEEECEEC
T ss_pred -------------------EEcCCCCCCCCCCCccEEEEecC---Cc------------CCc---hhheeecCCEEEEeC
Confidence 9995 599999999999999985 11 111 268999999999999
Q ss_pred -CceE-----EEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCcccccc
Q psy8076 567 -NGYI-----YVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIG 640 (737)
Q Consensus 567 -dG~l-----~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~ 640 (737)
+|++ +|+||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++.++++|++.++
T Consensus 317 ~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~------------ 384 (437)
T 2y27_A 317 GTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPE------------ 384 (437)
T ss_dssp CSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTT------------
T ss_pred CCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCC------------
Confidence 6985 8999999999999999999999999999999999999998887778889999988765
Q ss_pred ccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCce-eeeeEEEc--CCCCCCCCchhhHHH
Q psy8076 641 FGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIA-AFKLSTSV--TGLPRTRSGKTARKS 716 (737)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~p~~~~~v--~~lP~t~sGKi~R~~ 716 (737)
. .......++++++++++|+.++ +|..+.++ ++||+|+ ||++|+.
T Consensus 385 ~------------------------------~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 385 T------------------------------APDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp T------------------------------TTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred c------------------------------cchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 1 0112345678888889898884 88888888 5999999 9999864
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=271.53 Aligned_cols=237 Identities=16% Similarity=0.116 Sum_probs=173.9
Q ss_pred ccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHH--HhhhhcCCCCcEEEEeccc-ccccchhhhh
Q psy8076 254 VEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWT--MSVIYNMGQDDVWWTASDM-GWVVGHSYIC 330 (737)
Q Consensus 254 ~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~--~~~~~~~~~~d~~l~~~~~-~~~~g~~~~~ 330 (737)
..++++++|+||||||| .||||+++|+++.....+. ....++++++|++++.+|+ .|+.++.. .
T Consensus 88 ~~~~~~a~i~~TSGTTG------------~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~-~ 154 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTG------------APKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAIN-K 154 (369)
T ss_dssp SCTTCCCEEEEECC---------------CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHH-H
T ss_pred CCccccEEEEECCCCCC------------CCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHH-H
Confidence 47789999999999999 9999999998876665542 2244678899999999999 88888654 5
Q ss_pred hhccccCcEEEEecCCCCCCCChh-----------------------HHHHHHHhcCCcEEeecHHHHHHHHHcCCCCcc
Q psy8076 331 YGPLAAGITSVMYEGKPDRTPDPS-----------------------QYYRVIHNHKVNGLFTAPTALRVIRREDKDSTL 387 (737)
Q Consensus 331 ~~~L~~G~~~vl~~~~~~~~~~~~-----------------------~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~ 387 (737)
+.++..|+ +++.. .++|. .+++.|+++++|++.++|+++..|.+....
T Consensus 155 ~~~~~~G~-~v~~~-----~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~--- 225 (369)
T 3hgu_A 155 ERALRLGG-MFFSI-----DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEV--- 225 (369)
T ss_dssp HHHHHTTS-CEECC-----CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHH---
T ss_pred HHHHHcCC-EEECc-----cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhh---
Confidence 66688998 45443 24666 788899999999999999999999775321
Q ss_pred ccCCCCCCccEEEeecCCCCHHHHHHHH-Hhc-CCcccccccccccccccccccccCCCCCCCCCCccCCC------cCC
Q psy8076 388 GAQYSTDSLRYLFVAGEHCDHETKNWAE-KSF-NVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLP------FPG 459 (737)
Q Consensus 388 ~~~~~l~~Lr~i~~gGe~l~~~~~~~~~-~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p------~~g 459 (737)
...++++||.+++|||++++++.+++. +.| +++++|.||+||+++.+... +..++|+| +++
T Consensus 226 -~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~----------~~~~~G~~~~~~~~~~~ 294 (369)
T 3hgu_A 226 -VLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSL----------LITSESQQVIYDSFSPF 294 (369)
T ss_dssp -HHHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEEC----------CBCTTCSSCEEECCTTT
T ss_pred -hccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecc----------ccccCCCcccccCCCCC
Confidence 223567899999999999999999999 899 89999999999998654321 10247888 677
Q ss_pred CCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcC-CCCccCCCcceEEEEecCCCCCcccccc
Q psy8076 460 YDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRN-DGSECEPHELGRIVVKLPLPPGTMSTLY 538 (737)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~-~g~~~~~g~~GEL~i~g~~~~~~~~gy~ 538 (737)
+. ++ |+|+ +|+++|+|+.|||+|++...
T Consensus 295 ~~-----v~--------------------------------------ivD~~~g~~vp~G~~GEl~vt~l~~-------- 323 (369)
T 3hgu_A 295 IT-----YD--------------------------------------VVDSITAQTVEYGERGNVIVTHLSP-------- 323 (369)
T ss_dssp EE-----EE--------------------------------------EECTTTCSBCCTTCEEEEEEEEEET--------
T ss_pred eE-----EE--------------------------------------EECCCCCcCCCCCCceEEEEEEcCc--------
Confidence 66 66 9997 89999999999999997511
Q ss_pred cChhhhHHhhccCCCCeeecCceEEEecC--c-------eEEEEeecCCeEeeCcE
Q psy8076 539 KAPQRFMKIYFTKFPGYYDTMDAGYYDEN--G-------YIYVTARDDDVINVAGH 585 (737)
Q Consensus 539 ~~~~~~~~~~~~~~~g~~~TGDl~~~~~d--G-------~l~i~GR~dd~Ik~~G~ 585 (737)
..++ -.|+|||+++..+. | .+..++|.|++.||.|.
T Consensus 324 -------~~~l----~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 324 -------WAFY----PRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp -------TEEE----EEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred -------cccc----ccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 0011 13899999988543 2 46778899999999885
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.4e-15 Score=127.72 Aligned_cols=99 Identities=16% Similarity=0.267 Sum_probs=73.8
Q ss_pred eecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCCC
Q psy8076 574 ARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTN 653 (737)
Q Consensus 574 GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (737)
.|.||+||++|++|+|.|||++|.+||+|.++++++++++.+++.+.++|+..+..... .
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~--------~------------ 60 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDD--------Y------------ 60 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCC--------H------------
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccc--------c------------
Confidence 48999999999999999999999999999999999999998899999999988751000 0
Q ss_pred ccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEE--cCCCCCCCCchhhH
Q psy8076 654 PIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTS--VTGLPRTRSGKTAR 714 (737)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~--v~~lP~t~sGKi~R 714 (737)
.....+.++|++.+++.+. +|..+.+ .++|||| +||++|
T Consensus 61 ------------------~~~~~l~~~i~~~l~~~~g---v~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 61 ------------------GRLQALTREITRQLKDEIL---VTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHS---SCCEEEEECTTCSCCC----CCC
T ss_pred ------------------chhhhhHHHHHHHHHHHhC---CccceEEEcCCeecCC-CCCcch
Confidence 1123455667777777664 2333444 4689999 799987
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-06 Score=97.61 Aligned_cols=63 Identities=14% Similarity=0.175 Sum_probs=54.2
Q ss_pred ccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEec----CceEEEEeecCCeEeeCcEEech
Q psy8076 514 ECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDE----NGYIYVTARDDDVINVAGHRLST 589 (737)
Q Consensus 514 ~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~----dG~l~i~GR~dd~Ik~~G~rv~~ 589 (737)
.|..|+.+||+|+.. .|+|. |++||+++++. ...+.|+||.+++|++.|++|..
T Consensus 392 eVe~G~~YelViTt~------~GL~R----------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~ 449 (609)
T 4b2g_A 392 HVEVGKEYELVITTY------AGLYR----------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDE 449 (609)
T ss_dssp GCCTTCEEEEEEECT------TSCCS----------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCH
T ss_pred HcCCCCeEEEehhhh------hhhhh----------------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCH
Confidence 467899999999864 24443 99999999974 47899999999999999999999
Q ss_pred HHHHHHHhc
Q psy8076 590 SALEDVVLS 598 (737)
Q Consensus 590 ~eIE~~l~~ 598 (737)
.+||++|.+
T Consensus 450 ~~v~~av~~ 458 (609)
T 4b2g_A 450 AELQKAVDN 458 (609)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999884
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-06 Score=97.15 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=54.3
Q ss_pred ccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEec----CceEEEEeecCCeEeeCcEEech
Q psy8076 514 ECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDE----NGYIYVTARDDDVINVAGHRLST 589 (737)
Q Consensus 514 ~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~----dG~l~i~GR~dd~Ik~~G~rv~~ 589 (737)
.|..|+.+||+|+.. .|.|. |++||++++.. ...+.|+||.+++|++.|+++..
T Consensus 380 eVe~G~~YelViTt~------~GL~R----------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~ 437 (581)
T 4eql_A 380 DVKLGCTYEPVVTNF------AGLYR----------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNE 437 (581)
T ss_dssp GCCTTCEEEEEEECS------SSCCS----------------EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEH
T ss_pred HcCCCceEEEEEeec------cceee----------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCH
Confidence 456789999999974 23332 99999999976 46899999999999999999999
Q ss_pred HHHHHHHhcC
Q psy8076 590 SALEDVVLSH 599 (737)
Q Consensus 590 ~eIE~~l~~~ 599 (737)
.+||++|.+.
T Consensus 438 ~~v~~al~~a 447 (581)
T 4eql_A 438 EDLFKAVSQA 447 (581)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999999864
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.7e-06 Score=93.06 Aligned_cols=75 Identities=16% Similarity=0.080 Sum_probs=59.4
Q ss_pred CccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecC----ceEEEEeecCCeEeeCcEEec
Q psy8076 513 SECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDEN----GYIYVTARDDDVINVAGHRLS 588 (737)
Q Consensus 513 ~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~d----G~l~i~GR~dd~Ik~~G~rv~ 588 (737)
..|..|+.+||+|+.. .|.|. |++||++++..- ..+.|+||.++++++.|+++.
T Consensus 386 ~eve~G~~YelviTt~------~GL~R----------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~ 443 (581)
T 4epl_A 386 TQVKIGEEYEVVITNY------AGLYR----------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNT 443 (581)
T ss_dssp GGCCTTCEEEEEEEST------TSCSS----------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBC
T ss_pred HHcCCCCeEEEEEeec------cceee----------------EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECC
Confidence 3567899999999974 13332 999999999742 579999999999999999999
Q ss_pred hHHHHHHHhc------CC--CcceeEEec
Q psy8076 589 TSALEDVVLS------HP--DVGDTAVIG 609 (737)
Q Consensus 589 ~~eIE~~l~~------~p--~V~~a~vv~ 609 (737)
..+||++|.+ .. .|.|..+..
T Consensus 444 ~~~v~~al~~a~~~l~~~~~~l~eft~~~ 472 (581)
T 4epl_A 444 ERDLQLSVESAAKRLSEEKIEVIDFSSYI 472 (581)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHhhcccCCeEEEEEEec
Confidence 9999999875 22 356666554
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=86.39 E-value=4.4 Score=43.24 Aligned_cols=97 Identities=16% Similarity=0.167 Sum_probs=76.3
Q ss_pred CceEEEEeC-CCCC--ceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecC--CHHHHHHHHHHHHcCCEEEecCCC
Q psy8076 93 KKVALIHDS-PVTK--SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPL--IPEAIVSMLATVRLGAIHSVVFGG 167 (737)
Q Consensus 93 d~~Al~~~~-~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~--~~e~vva~lA~~~~G~~~vpl~~~ 167 (737)
+.+|.+... .-+| +.-.+|.+.+...+..+++.+...|+.++|++...++- ....+..+++++..|+..++.++.
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~ 165 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG 165 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC
Confidence 677766543 2222 34578999999988888888888999999999999874 345566778899999999887654
Q ss_pred CCHHHHHHHHhhcCCcEEEEcCC
Q psy8076 168 FAARELCARLEHAKPKVIIAASC 190 (737)
Q Consensus 168 ~~~~~l~~~l~~~~~~~vl~~~~ 190 (737)
.++.+...+++.++.+++....
T Consensus 166 -~~~~~~~~i~~~~~t~~~~~P~ 187 (436)
T 3qov_A 166 -NSKRQIKFISDFKTTALHAIPS 187 (436)
T ss_dssp -CHHHHHHHHHHHTCCEEECCHH
T ss_pred -CHHHHHHHHHHHCCCEEEECHH
Confidence 6788999999999999887653
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=85.90 E-value=6.4 Score=41.99 Aligned_cols=98 Identities=19% Similarity=0.259 Sum_probs=75.3
Q ss_pred CCceEEEE-eCCCCC--ceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCC--HHHHHHHHHHHHcCCEEEecCC
Q psy8076 92 AKKVALIH-DSPVTK--SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLI--PEAIVSMLATVRLGAIHSVVFG 166 (737)
Q Consensus 92 pd~~Al~~-~~~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~--~e~vva~lA~~~~G~~~vpl~~ 166 (737)
++.+|.+. -+.-+| +.-.+|.+.+...+..+++.+...|+.++|++...++-+ ...+..+++++..|+..+++++
T Consensus 91 ~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 170 (443)
T 2y4o_A 91 REQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSG 170 (443)
T ss_dssp GGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCS
T ss_pred hhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCC
Confidence 56666443 332223 245789999988888888888888999999999998853 4445667888999999988866
Q ss_pred CCCHHHHHHHHhhcCCcEEEEcCC
Q psy8076 167 GFAARELCARLEHAKPKVIIAASC 190 (737)
Q Consensus 167 ~~~~~~l~~~l~~~~~~~vl~~~~ 190 (737)
. .++++...+++.++.+++....
T Consensus 171 ~-~~~~~~~~i~~~~~t~l~~~Ps 193 (443)
T 2y4o_A 171 G-QTEKQVQLIRDFEPKIILVTPS 193 (443)
T ss_dssp C-CHHHHHHHHHHHCCSEEEECHH
T ss_pred C-CHHHHHHHHHHhCCcEEEECHH
Confidence 4 7889999999999999987653
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=85.85 E-value=4.8 Score=42.95 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=75.7
Q ss_pred CCceEEEEeC-CCCC--ceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecC--CHHHHHHHHHHHHcCCEEEecCC
Q psy8076 92 AKKVALIHDS-PVTK--SIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPL--IPEAIVSMLATVRLGAIHSVVFG 166 (737)
Q Consensus 92 pd~~Al~~~~-~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~--~~e~vva~lA~~~~G~~~vpl~~ 166 (737)
++.+|.+... .-+| +.-.+|.+.+...+..+++.+...|+.++|++...++. ....+..+++++..|+..+++++
T Consensus 89 ~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 168 (437)
T 2y27_A 89 QDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG 168 (437)
T ss_dssp GGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS
T ss_pred hhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC
Confidence 5666655433 2222 34578999998888888888888899999999999885 34445567888999999998765
Q ss_pred CCCHHHHHHHHhhcCCcEEEEcCC
Q psy8076 167 GFAARELCARLEHAKPKVIIAASC 190 (737)
Q Consensus 167 ~~~~~~l~~~l~~~~~~~vl~~~~ 190 (737)
..++++...+++.++.+++....
T Consensus 169 -~~~~~~~~~i~~~~~t~l~~~Ps 191 (437)
T 2y27_A 169 -GQTEKQVQLIQDFRPDIIMVTPS 191 (437)
T ss_dssp -CCHHHHHHHHHHHCCSEEEECHH
T ss_pred -CCHHHHHHHHHHhCCCEEEECHH
Confidence 47889999999999999987653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 737 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 1e-152 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 1e-128 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 4e-68 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 3e-57 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 5e-57 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 6e-55 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 9e-49 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 454 bits (1170), Expect = e-152
Identities = 208/711 (29%), Positives = 332/711 (46%), Gaps = 112/711 (15%)
Query: 26 DKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQP---FTKWFVGGEINACYNA 82
++Y Y++SI P++FW + G + W + ++ + S P KW+ G +N N
Sbjct: 18 EQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANC 77
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
+DRH++ + A+I + T + ++Y EL V A +L +G+ GD V IYMP
Sbjct: 78 LDRHLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMP 136
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202
++PEA V+MLA R+GA+HSV+FGGF+ + + + +++I A GV + + K
Sbjct: 137 MVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKK 196
Query: 203 ILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQ-RLSHRCVPVEANDPLY 261
+++AL+ + +I +R + + G D+ W D + + H+ + A DPL+
Sbjct: 197 NVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLF 256
Query: 262 ILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMG 321
ILYTSG+TGK PKG+L GG++ A T +++ D++W +D+G
Sbjct: 257 ILYTSGSTGK------------PKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVG 304
Query: 322 WVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRE 381
WV GHSY+ YGPLA G T++M+EG P+ P P++ +V+ H+VN L+TAPTA+R + E
Sbjct: 305 WVTGHSYLLYGPLACGATTLMFEGVPNW-PTPARMCQVVDKHQVNILYTAPTAIRALMAE 363
Query: 382 DKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF---NVTMLNHWWQTETGHSITAH 438
+ G S SLR L GE + E W K +++ WWQTETG +
Sbjct: 364 GDKAIEGTDRS--SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITP 421
Query: 439 CLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNAT 498
G S PF G
Sbjct: 422 LPGAIELKAG---SATRPFFG--------------------------------------- 439
Query: 499 HFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDT 558
V+ ++ N+G E G +V+ PG TL+ +RF + YF+ F Y +
Sbjct: 440 ----VQPALVDNEGHPQEGATEGNLVITDSW-PGQARTLFGDHERFEQTYFSTFKNMYFS 494
Query: 559 MDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEI 618
D DE+GY ++T R DDV+NV+GHRL T+ +E +++HP + + AV+G+P KG+
Sbjct: 495 GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQA 554
Query: 619 PFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIG 678
Y+ L P E+
Sbjct: 555 I-YAYV--------------------------------TLNHGEEP---------SPELY 572
Query: 679 KELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKPLRVR 729
E++ VR+ IGP+A + LP+TRSGK R+ + +A +
Sbjct: 573 AEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLG 623
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 392 bits (1007), Expect = e-128
Identities = 208/712 (29%), Positives = 324/712 (45%), Gaps = 106/712 (14%)
Query: 28 YYDAYRKSIEAPESFWTDV-GNMATWSKKWDRILDNSDQ------PFTKWFVGGEINACY 80
Y +++SIE P F+ WSK +D++ + WF+ G++NACY
Sbjct: 3 YQRLHKESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACY 62
Query: 81 NAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLA-AIGVSAGDRVLI 139
N +DRH + K A+I + +TY EL E+V +A L ++GV GD V +
Sbjct: 63 NCVDRHALKT-PNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAV 121
Query: 140 YMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVR 199
YMP++PEAI+++LA R+GAIHSVVF GF++ L R+ KV+I KV+
Sbjct: 122 YMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIE 181
Query: 200 YKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDP 259
K I+++AL + + + A P + + + C PV++ DP
Sbjct: 182 TKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDP 241
Query: 260 LYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASD 319
L++LYTSG+TG PKG+ G++ TM ++ Q+DV++TA D
Sbjct: 242 LFLLYTSGSTGA------------PKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGD 289
Query: 320 MGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIR 379
+GW+ GH+Y+ YGPL G ++++EG P P+ S+Y+ +I HKV + APTALR+++
Sbjct: 290 IGWITGHTYVVYGPLLYGCATLVFEGTPAY-PNYSRYWDIIDEHKVTQFYVAPTALRLLK 348
Query: 380 REDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSF---NVTMLNHWWQTETGHSIT 436
R +S SLR L GE E W + + +++ +WQTE+G +
Sbjct: 349 RAGDS--YIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLV 406
Query: 437 AHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQN 496
G P S PF G D +L + + +
Sbjct: 407 TPLAGGVTPMKPG--SASFPFFGID------------------AVVLDPNTGEELN---- 442
Query: 497 ATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYY 556
H G + VK P T++K R++ Y +PGYY
Sbjct: 443 -------------------TSHAEGVLAVKAA-WPSFARTIWKNHDRYLDTYLNPYPGYY 482
Query: 557 DTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKG 616
T D D++GYI++ R DDV+NV+GHRLST+ +E ++ P V + AV+G + G
Sbjct: 483 FTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTG 542
Query: 617 EIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEE 676
+ + F L+ +S T L ++
Sbjct: 543 QA-------------------VAAFVVLKNKSSWSTATDDEL----------------QD 567
Query: 677 IGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKPLRV 728
I K L VR+ IGP AA KL V LP+TRSGK R+ + + + ++
Sbjct: 568 IKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESDQL 619
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 231 bits (590), Expect = 4e-68
Identities = 114/653 (17%), Positives = 210/653 (32%), Gaps = 146/653 (22%)
Query: 80 YNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLI 139
++ ++R +K + T + + TYAE+ ++ L G L A+GV GDRV
Sbjct: 14 WDFLERAAAL-FGRKEVVSR--LHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVAT 70
Query: 140 YMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVR 199
+ + A +GA+ + +E+ L HA+ KV++ + + +R
Sbjct: 71 LGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR 130
Query: 200 YKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDP 259
+ + + V E P + +++AL + V V
Sbjct: 131 GE-----------------LKTVQHFVVMDEKAPEGYLAYEEALGEE--ADPVRVPERAA 171
Query: 260 LYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASD 319
+ YT+GTTG P+G + + +LA ++ + + DV
Sbjct: 172 CGMAYTTGTTGLPKGV-----------VYSHRALVLHSLAASLVDGTALSEKDVVLPVVP 220
Query: 320 MGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIR 379
M + V + Y G V+ P DP+ + V PT +
Sbjct: 221 M-FHVNAWCLPYAATLVGAKQVL----PGPRLDPASLVELFDGEGVTFTAGVPTVWLALA 275
Query: 380 REDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHC 439
+ + +LR L V G E+ V + + TET + +
Sbjct: 276 DYLES----TGHRLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQGYGLTETSPVVVQNF 330
Query: 440 LGYQHDTVPP------KYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPK 493
+ +++ K TGLP P
Sbjct: 331 VKSHLESLSEEEKLTLKAKTGLPIPL---------------------------------- 356
Query: 494 GQNATHFTSVEVRIIRNDGSECEP--HELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTK 551
V +R+ +G LG + +K P Y +
Sbjct: 357 ---------VRLRVADEEGRPVPKDGKALGEVQLK---GPWITGGYYGNEEATRSALT-- 402
Query: 552 FPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVP 611
G++ T D +DE GY+ + R D+I G +S+ LE+ ++ HP V + AV+ +P
Sbjct: 403 PDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIP 462
Query: 612 EPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCT 671
P E P +
Sbjct: 463 HPKWQERP-LAVV---------------------------------------------VP 476
Query: 672 RSDEEIGKEL-KELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARN 723
R ++ +EL + L++ +PRT +GK ++++ + +N
Sbjct: 477 RGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKN 529
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 202 bits (513), Expect = 3e-57
Identities = 102/669 (15%), Positives = 209/669 (31%), Gaps = 139/669 (20%)
Query: 58 RILDNSDQPFTKWFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQE 117
+ + PF G + A+ R+ +A +TYAE E
Sbjct: 2 KNIKKGPAPFYPLEDGTAGEQLHKAMKRYALV--PGTIAFTDAH----IEVNITYAEYFE 55
Query: 118 QVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARL 177
LA ++ G++ R+++ + + +L + +G + + REL +
Sbjct: 56 MSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSM 115
Query: 178 EHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237
++P V+ + G++ V+ K + + + I K DY + L PG++
Sbjct: 116 NISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFN- 174
Query: 238 LWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIAT 297
+ I+ +SG+TG PKG+ P
Sbjct: 175 -------EYDFVPESFDRDKTIALIMNSSGSTGL------------PKGVALPHRTACVR 215
Query: 298 LAWTMSVIY--NMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQ 355
+ I+ + D + G + +MY +
Sbjct: 216 FSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY------RFEEEL 269
Query: 356 YYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHET-KNWA 414
+ R + ++K+ PT + L +Y +L + G E + A
Sbjct: 270 FLRSLQDYKIQSALLVPTLFSFFAKST----LIDKYDLSNLHEIASGGAPLSKEVGEAVA 325
Query: 415 EKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLD 474
++ + + TET +I G + G P +
Sbjct: 326 KRFHLPGIRQGYGLTETTSAILITPEGDDKPG-----AVGKVVPFF-------------- 366
Query: 475 GRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRND-GSECEPHELGRIVVKLPLPPGT 533
E +++ D G ++ G + V+ P
Sbjct: 367 -----------------------------EAKVVDLDTGKTLGVNQRGELCVR---GPMI 394
Query: 534 MSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALE 593
MS P K G+ + D Y+DE+ + ++ R +I G++++ + LE
Sbjct: 395 MSGYVNNP-EATNALIDK-DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELE 452
Query: 594 DVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTN 653
++L HP++ D V G+P+ GE+P +
Sbjct: 453 SILLQHPNIFDAGVAGLPDDDAGELPAAV------------------------------- 481
Query: 654 PIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLS-TSVTGLPRTRSGKT 712
V+++ ++ KE+ + V + + V +P+ +GK
Sbjct: 482 ---VVLEHGKTMTE-----------KEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKL 527
Query: 713 ARKSIVDMA 721
+ I ++
Sbjct: 528 DARKIREIL 536
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 200 bits (509), Expect = 5e-57
Identities = 93/634 (14%), Positives = 191/634 (30%), Gaps = 158/634 (24%)
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
+ V + VA++ ++ ++TY EL + + LA G+ V I M
Sbjct: 29 FEEQVSK-RPNNVAIVCEN------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMME 81
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202
+ + +LA ++ G + + + + L+ ++ ++++ V +++
Sbjct: 82 KSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNG 141
Query: 203 ILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYI 262
+ D + ++ VP ++ D Y+
Sbjct: 142 QVE------------------------------IFEEDTIKIREGTNLHVPSKSTDLAYV 171
Query: 263 LYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGW 322
+YTSGTTG P+G I+ L N+ + D + + +
Sbjct: 172 IYTSGTTGNPKGT-------------MLEHKGISNLKVFFENSLNVTEKDRIGQFASISF 218
Query: 323 VVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRED 382
+ L ++ D D ++ + I+ ++ + PT + + E
Sbjct: 219 DASVWEMFMALLTGASLYIIL---KDTINDFVKFEQYINQKEITVITLPPTYVVHLDPER 275
Query: 383 KDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGY 442
S ++ L AG N ++ VT +N + TET
Sbjct: 276 ILS----------IQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETT---------- 313
Query: 443 QHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTS 502
I W+ + + +VP G +
Sbjct: 314 ------------------------ICATTWVATKET--------IGHSVPIGAPIQNT-- 339
Query: 503 VEVRIIRNDGSECEPHELGRIVVKLP-LPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDA 561
++ I+ + E G + + L G Q+F+ F Y T D
Sbjct: 340 -QIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQ 398
Query: 562 GYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFC 621
+ +G I R D+ + + GHR+ +E ++L H + +TAV + + C
Sbjct: 399 ARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYL-C 457
Query: 622 LYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKEL 681
Y + ++L
Sbjct: 458 AYFVSEKHIPL----------------------------------------------EQL 471
Query: 682 KELVREAIGPIAAFKLSTSVTGLPRTRSGKTARK 715
++ E + + +P T +GK RK
Sbjct: 472 RQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRK 505
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 195 bits (496), Expect = 6e-55
Identities = 107/645 (16%), Positives = 192/645 (29%), Gaps = 146/645 (22%)
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
+ + ++A+ + +Y EL + LA +G+ DRV++ +P
Sbjct: 31 LRDRAAK-YGDRIAITCGN------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLP 83
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202
I E + A RLGA+ + E+ E A+ I + +
Sbjct: 84 NIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLAR- 142
Query: 203 ILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYI 262
+ + ++ + + + V+++D ++
Sbjct: 143 ---------------QVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFL 187
Query: 263 LYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGW 322
+ G+TG K I R +I +L ++ V +
Sbjct: 188 QLSGGSTGL------------SKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHN 235
Query: 323 VVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRED 382
S G L AG V+ +P P + +I KV P V
Sbjct: 236 YPLSSPGVLGVLYAGGRVVLS-----PSPSPDDAFPLIEREKVTITALVPPLAMVWMDAA 290
Query: 383 KDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGY 442
+ SL+ L V G E + F T+ + E + L
Sbjct: 291 SS----RRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAE--GLVNYTRLDD 344
Query: 443 QHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTS 502
+ + + G P YD
Sbjct: 345 PEEIIVN--TQGKPMSPYD----------------------------------------- 361
Query: 503 VEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAG 562
E R+ + + +P E G ++ + P G+Y T D
Sbjct: 362 -ESRVWDDHDRDVKPGETGHLLTRGPYT-----IRGYYKAEEHNAASFTEDGFYRTGDIV 415
Query: 563 YYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCL 622
+GYI V R D IN G +++ +E+ +L+HP V D A++ +P+ GE C+
Sbjct: 416 RLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERS-CV 474
Query: 623 YIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELK 682
+I R + ELK
Sbjct: 475 FI---------------------------------------------IPRDEAPKAAELK 489
Query: 683 ELVREAIGPIAAFKLSTS---VTGLPRTRSGKTARKSIVDMARNK 724
+RE +AA+K+ V P+T GK ++K++ + K
Sbjct: 490 AFLRERG--LAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEK 532
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 177 bits (449), Expect = 9e-49
Identities = 101/545 (18%), Positives = 171/545 (31%), Gaps = 102/545 (18%)
Query: 83 IDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMP 142
+ R R AL + ++T+AEL+ +V +A L A G+ RV + P
Sbjct: 8 LRRAATR-APDHCALAVPA----RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 143 LIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKT 202
+ ++++LA RLGA+ +++ + EL ++ + + A
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG------------ 110
Query: 203 ILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLSHRCVPVEANDPLYI 262
A I IIF V + E + E P +I
Sbjct: 111 -RQVADAIFQSGSGARIIFLGDLVRDGE-----------PYSYGPPIEDPQREPAQPAFI 158
Query: 263 LYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQD-DVWWTASDMG 321
YTSGTTG PK + P + + + + + +V +
Sbjct: 159 FYTSGTTGL------------PKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLY 206
Query: 322 WVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRRE 381
VVG + LA T V+ E P +++ +V LF PT L +
Sbjct: 207 HVVGFFAVLVAALALDGTYVVVEE-----FRPVDALQLVQQEQVTSLFATPTHLDALAAA 261
Query: 382 DKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLG 441
+ G+ DSLR++ AG + +N + TE +S+
Sbjct: 262 AAHA--GSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQ-- 317
Query: 442 YQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFT 501
G
Sbjct: 318 -------------------------------------------------PKTGTEMAPGF 328
Query: 502 SVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDA 561
EVRI+R G E G + + Y + G+Y T D
Sbjct: 329 FSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGY--LNQPQATAEKLQDGWYRTSDV 386
Query: 562 GYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFC 621
+ G + + R DD+I G + S +E V+ + P V + VIG+ + G+
Sbjct: 387 AVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTA 446
Query: 622 LYIKK 626
+ +
Sbjct: 447 CVVPR 451
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 737 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=3.4e-97 Score=856.58 Aligned_cols=605 Identities=33% Similarity=0.638 Sum_probs=534.4
Q ss_pred ccccccccCChhHHHHHHHHHhhChhhHHHHHHhhcccccCccccccCCCC---CCCCCCCCCchhHHHHHHhhhhhccC
Q psy8076 15 NKINECTSNQNDKYYDAYRKSIEAPESFWTDVGNMATWSKKWDRILDNSDQ---PFTKWFVGGEINACYNAIDRHVERGM 91 (737)
Q Consensus 15 ~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~n~~~~~l~~~~~~~~ 91 (737)
+.+.+...-.+++|..+++++++||+.||+++++.+.|.++++++++.... +..+||+++.+|+++|+|++|++.+
T Consensus 7 ~~~~~~~~~~~~~y~~l~~~s~~~~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~N~~~n~ldrh~~~~- 85 (643)
T d1pg4a_ 7 ANIADRCLINPEQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQEN- 85 (643)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHCHHHHHHHHGGGSCCSBCCSCCEEEECCTTCCEEEESTTCEECHHHHHTGGGHHHH-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhCHHHHHHHHHhheeEECCCcccccCccCCCCCCCeeCCCChhhHHHHHHHHHHHhC-
Confidence 344444555688999999999999999999999999999999999876543 3678999999999999999999988
Q ss_pred CCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCHH
Q psy8076 92 AKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAAR 171 (737)
Q Consensus 92 pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~ 171 (737)
||++|+++.+++.+..+++||+||.++++++|++|+++||++||+|+++++|++++++++|||+++|++++|+++.++++
T Consensus 86 ~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~l~~~~~~~ 165 (643)
T d1pg4a_ 86 GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPE 165 (643)
T ss_dssp TTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHH
T ss_pred CCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeEEEecCCCCCHH
Confidence 99999999876677789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcC-CCCCeEEEEecccccccccCCCCcccHHHHHhhcCC-C
Q psy8076 172 ELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISS-CKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRLS-H 249 (737)
Q Consensus 172 ~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 249 (737)
++.+++++++++++|+++.....++.......+..++.... ..+++++++... .............+.+....... .
T Consensus 166 ~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (643)
T d1pg4a_ 166 AVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRT-GSDIDWQEGRDLWWRDLIEKASPEH 244 (643)
T ss_dssp HHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSS-CCCCCCCBTTEEEHHHHHTTSCSCC
T ss_pred HHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccC-CcccccccccchhhhhhhcccCccc
Confidence 99999999999999999998888888888888877765432 256778887765 33333344445555555554433 4
Q ss_pred CCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccccchhhh
Q psy8076 250 RCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYI 329 (737)
Q Consensus 250 ~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~ 329 (737)
.+...+++++++|+||||||| .||||+++|++++......+...++++++|++++.+|++|++|+.+.
T Consensus 245 ~~~~~~~dd~a~IlyTSGTTG------------~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~ 312 (643)
T d1pg4a_ 245 QPEAMNAEDPLFILYTSGSTG------------KPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYL 312 (643)
T ss_dssp CCCCEETTSEEEEEEECCSSS------------SCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHT
T ss_pred CCCCCCCCCeEEEEeCCCccc------------CCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Confidence 556678999999999999999 99999999999888888777888999999999999999999998877
Q ss_pred hhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHH
Q psy8076 330 CYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHE 409 (737)
Q Consensus 330 ~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~ 409 (737)
++++|+.|++++++++.+. .+++..+++.|++++||+++++|++++.|.+...... ...++++||.+++||++++++
T Consensus 313 l~~~L~~G~t~vl~~~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~--~~~dl~sLr~i~~~G~pl~~~ 389 (643)
T d1pg4a_ 313 LYGPLACGATTLMFEGVPN-WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI--EGTDRSSLRILGSVGEPINPE 389 (643)
T ss_dssp THHHHHTTCEEEEECSCTT-SSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGT--TTCCCTTCCEEEEESSCCCHH
T ss_pred HHHHHHhCCEEEEecCCCC-CCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhc--cccCCCceEEEEEEeCCCCHH
Confidence 8899999999999988666 6799999999999999999999999999987654332 566899999999999999999
Q ss_pred HHHHHHHhcC---CcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccc
Q psy8076 410 TKNWAEKSFN---VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPES 486 (737)
Q Consensus 410 ~~~~~~~~~~---~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (737)
+++++.+.++ +++++.||+||+|+.++.... .....++ +++|+|++|++ ++
T Consensus 390 ~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~--~~~~~~~-gs~G~p~~g~~-----v~------------------ 443 (643)
T d1pg4a_ 390 AWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLP--GAIELKA-GSATRPFFGVQ-----PA------------------ 443 (643)
T ss_dssp HHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCT--TTCCBCT-TCCBSBCTTCC-----EE------------------
T ss_pred HHHHHHHHhCCCCceEEEeechhhccceEEecCC--CccCCCC-CccccccCCCE-----EE------------------
Confidence 9999999985 579999999999976665322 2334455 78999999988 77
Q ss_pred cccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEec
Q psy8076 487 LRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDE 566 (737)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~ 566 (737)
|+|++|++++.|+.|||+|+|++| +++.|||++++++.+.|+...+|||+|||+|++|+
T Consensus 444 --------------------ivd~~g~~~~~g~~Gel~v~~~~p-~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~ 502 (643)
T d1pg4a_ 444 --------------------LVDNEGHPQEGATEGNLVITDSWP-GQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE 502 (643)
T ss_dssp --------------------EECTTCCBCCSSEEEEEEECSCCT-TCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECT
T ss_pred --------------------EECCCCCCCCCCceEEEEEecCCC-cccccccCChhhchhhhcccCCCeEEcCCEEEECC
Confidence 999999999999999999999886 89999999999999999988899999999999999
Q ss_pred CceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCC
Q psy8076 567 NGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLER 646 (737)
Q Consensus 567 dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 646 (737)
||+|+|+||+||+||++|+||+|.|||++|.+||.|.||+|++++++..|+.++|||+++++ .
T Consensus 503 dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~------------~----- 565 (643)
T d1pg4a_ 503 DGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHG------------E----- 565 (643)
T ss_dssp TSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTT------------C-----
T ss_pred CceEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCC------------C-----
Confidence 99999999999999999999999999999999999999999999999899999999999876 2
Q ss_pred CCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHHHcCCC
Q psy8076 647 PTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKP 725 (737)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~~~ 725 (737)
....++..+|+++++++|++|++|+.|+++++||+|++||++|++|++++.++.
T Consensus 566 -------------------------~~~~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~~ 619 (643)
T d1pg4a_ 566 -------------------------EPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDT 619 (643)
T ss_dssp -------------------------CCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC-
T ss_pred -------------------------CCCHHHHHHHHHHHHhhCCcccCccEEEEECCCCCCCCcCccHHHHHHHhcCCc
Confidence 234567889999999999999999999999999999999999999999998853
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.8e-91 Score=807.23 Aligned_cols=601 Identities=34% Similarity=0.619 Sum_probs=509.3
Q ss_pred HHHHHHHHHhhChhhHHHHHHhh-cccccCccccccCCC------CCCCCCCCCCchhHHHHHHhhhhhccCCCceEEEE
Q psy8076 27 KYYDAYRKSIEAPESFWTDVGNM-ATWSKKWDRILDNSD------QPFTKWFVGGEINACYNAIDRHVERGMAKKVALIH 99 (737)
Q Consensus 27 ~~~~l~~~~~~~p~~~~~~~~~~-~~~~~~~~~~l~~~~------~~~~~~~~~~~~n~~~~~l~~~~~~~~pd~~Al~~ 99 (737)
+|..|++++++||+.||.+++.. +.|.+++++++.... .+..+||+++.+|+++|+|++|++++ ||++|+++
T Consensus 2 ~y~~l~~~Si~~~~~Fw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~lN~~~n~ldr~a~~~-pd~~Ali~ 80 (640)
T d1ry2a_ 2 DYQRLHKESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHALKT-PNKKAIIF 80 (640)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHCCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHHTTC-TTSEEEEE
T ss_pred CHHHHHHHHHhCHHHHHHHHHHhheeEecCCeEeeccCCccCCCCCCCCcCCCCCchhHHHHHHHHHHhhC-CCCEEEEE
Confidence 79999999999999999998876 899999998875432 34568999999999999999999998 99999999
Q ss_pred eCCCCCceeEEcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEecCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHh
Q psy8076 100 DSPVTKSIRKVTYAELQEQVSLLAGSLA-AIGVSAGDRVLIYMPLIPEAIVSMLATVRLGAIHSVVFGGFAARELCARLE 178 (737)
Q Consensus 100 ~~~~~~~~~~~Ty~eL~~~v~~lA~~L~-~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~ 178 (737)
.+++.+..+++||+||+++++++|++|+ ++||++||+|+|+++|++++++++|||+++|++++|+++.++++++.++++
T Consensus 81 ~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~ 160 (640)
T d1ry2a_ 81 EGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRIN 160 (640)
T ss_dssp ECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHH
T ss_pred EecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCceEeecCCCCCCHHHHHHHHH
Confidence 8766777899999999999999999997 679999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcccHHHHHhhcC-CCCCccccCC
Q psy8076 179 HAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDILWDDALAQRL-SHRCVPVEAN 257 (737)
Q Consensus 179 ~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 257 (737)
++++++++++.......+.+.....+.+...... .......+.................+........ .....+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (640)
T d1ry2a_ 161 DGDSKVVITTDESNRGGKVIETKRIVDDALRETP-GVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSE 239 (640)
T ss_dssp HHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCT-TCCEEEEECSSCCSSCCCCSSSEEEHHHHHTTSCSCCCCCCEETT
T ss_pred hhhccccccchhhhhccchhhhHHHHHhhhhhhc-ccceeeeecccccccccccccccccccccccccccccccCCcccc
Confidence 9999999999998888888888888877766665 5555555544322222222222333333333222 2455567889
Q ss_pred CCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEecccccccchhhhhhhccccC
Q psy8076 258 DPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTASDMGWVVGHSYICYGPLAAG 337 (737)
Q Consensus 258 ~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G 337 (737)
++++|+||||||| .||||+++|++++.+........++++++|++++.+|++|++|+.+.++++|..|
T Consensus 240 d~a~i~~TSGTTG------------~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G 307 (640)
T d1ry2a_ 240 DPLFLLYTSGSTG------------APKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYG 307 (640)
T ss_dssp SCCEEEEECCSSS------------SCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHT
T ss_pred cCCEEEECCCCCC------------CCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHHHHHHHHhC
Confidence 9999999999999 9999999999988888777777889999999999999999999888889999999
Q ss_pred cEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCccEEEeecCCCCHHHHHHHHHh
Q psy8076 338 ITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLRYLFVAGEHCDHETKNWAEKS 417 (737)
Q Consensus 338 ~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~ 417 (737)
++++++++.+. .+++..+++.|+++++|+++++|++++.|.+...... ...++++||.+++||+++++++.+++.+.
T Consensus 308 ~~~v~~~~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--~~~~l~sLr~v~~gG~~l~~~~~~~~~~~ 384 (640)
T d1ry2a_ 308 CATLVFEGTPA-YPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYI--ENHSLKSLRCLGSVGEPIAAEVWEWYSEK 384 (640)
T ss_dssp SEEEEECSCTT-SSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSS--SSCCCTTCCEEEECSSCCCHHHHHHHHHT
T ss_pred CEEEEecCCCC-CCCHHHHHHHHHHhCccEEEcChHHHHHHHhcccccc--ccCCCCceEEEEEecccCcHHHHHHHHHh
Confidence 99999987665 6789999999999999999999999999987654432 56689999999999999999999999999
Q ss_pred cC---CcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCccccccccccccccCCCCC
Q psy8076 418 FN---VTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKG 494 (737)
Q Consensus 418 ~~---~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (737)
+| ..+++.||+||++........ ....+.++ +++|+|++|++ ++
T Consensus 385 ~g~~~~~i~~~yg~te~~~~~~~~~~-~~~~~~~~-gs~G~p~~g~~-----~~-------------------------- 431 (640)
T d1ry2a_ 385 IGKNEIPIVDTYWQTESGSHLVTPLA-GGVTPMKP-GSASFPFFGID-----AV-------------------------- 431 (640)
T ss_dssp TSCSSSCEEECBCCTTTCSCSEECCT-TTCCCCCT-TCCCEECTTCC-----EE--------------------------
T ss_pred cCCCcceEEeeecccccccccccccC-CCcCCCCC-cccccccCCce-----EE--------------------------
Confidence 86 468999999999876554332 12334455 78999999888 77
Q ss_pred CCCcccccceEEEEcCCCCcc--CCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCeeecCceEEEecCceEEE
Q psy8076 495 QNATHFTSVEVRIIRNDGSEC--EPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYV 572 (737)
Q Consensus 495 ~~~~~~~~~~~~Ivd~~g~~~--~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i 572 (737)
|+|+++..+ +.+..|||+++|++| +++.|||++++++.+.|+.+.+|||+|||+|++|+||+|+|
T Consensus 432 ------------i~d~~~~~~~~~~~~~Gel~i~~~~p-~~~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG~l~i 498 (640)
T d1ry2a_ 432 ------------VLDPNTGEELNTSHAEGVLAVKAAWP-SFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWI 498 (640)
T ss_dssp ------------EECSSSTTCEECSSCEEEEEESSCCT-TSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEE
T ss_pred ------------EEeCCCCcccCCCCceEEEEEEecCC-CcccccccCHHHHHhhhccCCCCeEEcCCceeECCCCCEEE
Confidence 999765433 446779999999876 89999999999999999988899999999999999999999
Q ss_pred EeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCccccccccccCCCCccCC
Q psy8076 573 TARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLT 652 (737)
Q Consensus 573 ~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (737)
+||+||+||++|+||+|.|||++|.+||.|.+|+|++++++..|+.++|||+++++..... .
T Consensus 499 ~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~-------~----------- 560 (640)
T d1ry2a_ 499 LGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWST-------A----------- 560 (640)
T ss_dssp CSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC--------------------------
T ss_pred EEcCCCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCccc-------c-----------
Confidence 9999999999999999999999999999999999999999999999999999987611000 0
Q ss_pred CccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhhHHHHHHHHcCCC
Q psy8076 653 NPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTARKSIVDMARNKP 725 (737)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~R~~l~~~~~~~~ 725 (737)
......++.++|+++++++|++|++|+.|+++++||+|+||||+|++||+++.++.
T Consensus 561 -----------------~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~~ 616 (640)
T d1ry2a_ 561 -----------------TDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGES 616 (640)
T ss_dssp ---------------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC---
T ss_pred -----------------chHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCCCcCccHHHHHHHHhCCc
Confidence 00111346788999999999999999999999999999999999999999998753
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.5e-73 Score=647.42 Aligned_cols=517 Identities=20% Similarity=0.263 Sum_probs=390.1
Q ss_pred CCCCCCCchhHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHH
Q psy8076 68 TKWFVGGEINACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEA 147 (737)
Q Consensus 68 ~~~~~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~ 147 (737)
+.|+.+..+| ++++|+++++++ ||++|+++.. .++.+++||+||+++++++|++|.++|+++||+|+|+++|++++
T Consensus 3 p~~~~~~~~~-l~~~l~~~a~~~-pd~~av~~~~--~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~ 78 (534)
T d1v25a_ 3 PSTMMDEELN-LWDFLERAAALF-GRKEVVSRLH--TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH 78 (534)
T ss_dssp BCCBCCCCCC-THHHHHHHHHHS-TTCEEEEECT--TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH
T ss_pred CCccCCCCCC-HHHHHHHHHHHc-CCCeEEEEec--CCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHH
Confidence 4566666665 688999999999 9999999876 45568899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEeccccc
Q psy8076 148 IVSMLATVRLGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVE 227 (737)
Q Consensus 148 vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~ 227 (737)
++++|||+++|++++|++|.++.+++.++++++++++++++.. ............+ ..+..++......
T Consensus 79 ~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~~~- 147 (534)
T d1v25a_ 79 LEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPN---------LLPLVEAIRGELK-TVQHFVVMDEKAP- 147 (534)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGG---------GHHHHHHHGGGCS-SCCEEEESSSCCC-
T ss_pred HHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccch---------hhhhHHHHhhccc-ccceeEEeecccc-
Confidence 9999999999999999999999999999999999999999875 3344444444444 4555554333200
Q ss_pred ccccCCCCcccHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHH-HHhhhh
Q psy8076 228 EAELTPGYDILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAW-TMSVIY 306 (737)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~-~~~~~~ 306 (737)
....................++++++++||||||| .||||+++|.+++..... .....+
T Consensus 148 --------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PKgv~~s~~~l~~~~~~~~~~~~~ 207 (534)
T d1v25a_ 148 --------EGYLAYEEALGEEADPVRVPERAACGMAYTTGTTG------------LPKGVVYSHRALVLHSLAASLVDGT 207 (534)
T ss_dssp --------TTCEEHHHHCCSCCCCCCCCTTSEEEEEEECSSSS------------SCEEEEEEHHHHHHHHHHTTSTTTT
T ss_pred --------cccccccccccccccccccccCCcEEEEEecCCCC------------Cccccccccchhhhhhhhhhhhccc
Confidence 11111111122223445567889999999999999 999999999887655433 233345
Q ss_pred cCCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCc
Q psy8076 307 NMGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDST 386 (737)
Q Consensus 307 ~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~ 386 (737)
.+...|++++.+|++|..++.. .+.++..|+++++... ..++..++..++++++|++.++|+++..+......
T Consensus 208 ~~~~~d~~~~~~p~~~~~~~~~-~~~~~~~g~~~v~~~~----~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~-- 280 (534)
T d1v25a_ 208 ALSEKDVVLPVVPMFHVNAWCL-PYAATLVGAKQVLPGP----RLDPASLVELFDGEGVTFTAGVPTVWLALADYLES-- 280 (534)
T ss_dssp CCCTTCEEEECSCTTSHHHHTH-HHHHHHHTCEEEECTT----CCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHH--
T ss_pred ccccccccccccchhhhccccc-cceeeeecceeeeccc----cccccccchhhhhccccccccCchhhhhhhhhhcc--
Confidence 6678999999999999988666 5667777777777654 47899999999999999999999999998876443
Q ss_pred cccCCCCCCccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCC-------CCCCCccCCCcCC
Q psy8076 387 LGAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDT-------VPPKYSTGLPFPG 459 (737)
Q Consensus 387 ~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~-------~~~~~~~G~p~~g 459 (737)
...++++||.+++||++++++..+++.+ ++..+++.||+||++..++.......... .++ +++|+|++|
T Consensus 281 --~~~~~~~lr~~~~gG~~~~~~~~~~~~~-~~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~p~~g 356 (534)
T d1v25a_ 281 --TGHRLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLK-AKTGLPIPL 356 (534)
T ss_dssp --HTCCCSSCCEEEECSSCCCHHHHHHHHH-TTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHH-TSCBEECTT
T ss_pred --ccccccceeEEEEecCCCCHHHHHHHHH-hCCeeeeeccccccccceeecccCccccccCcccccccc-ccceeccCC
Confidence 4557899999999999999999999885 58899999999999987765432111111 011 466777777
Q ss_pred CCCCcceeeeeccccCccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCC--CcceEEEEecCCCCCccccc
Q psy8076 460 YDGKYVNIVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEP--HELGRIVVKLPLPPGTMSTL 537 (737)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~--g~~GEL~i~g~~~~~~~~gy 537 (737)
++ ++ |+|++|++++. |+.|||+|+|| +++.||
T Consensus 357 ~~-----~~--------------------------------------i~d~~~~~~~~~~~~~Gel~v~g~---~v~~gY 390 (534)
T d1v25a_ 357 VR-----LR--------------------------------------VADEEGRPVPKDGKALGEVQLKGP---WITGGY 390 (534)
T ss_dssp CE-----EE--------------------------------------EECTTSCBCCSSSCCCEEEEEEST---TSBSSC
T ss_pred cE-----EE--------------------------------------EECCCCCCCCCCCCeeEEEEEcCC---ccccee
Confidence 66 66 99999999987 78999999999 999999
Q ss_pred ccChhhhHHhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCc
Q psy8076 538 YKAPQRFMKIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGE 617 (737)
Q Consensus 538 ~~~~~~~~~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~ 617 (737)
|++++.+.+.+. .+|||+|||+|++++||++++.||+||+||++|++|+|.|||++|.+||+|.||+|++++++..++
T Consensus 391 ~~~~~~t~~~~~--~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~ 468 (534)
T d1v25a_ 391 YGNEEATRSALT--PDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQE 468 (534)
T ss_dssp BTCHHHHHTTBC--TTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSE
T ss_pred cCChhhhhhhcc--cCCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCe
Confidence 999998888764 389999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeee
Q psy8076 618 IPFCLYIKKRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKL 697 (737)
Q Consensus 618 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 697 (737)
.++|+|+++.. . ....+.++..+++.|++|++|..
T Consensus 469 ~l~a~vv~~~~------------~---------------------------------~~~~~~~~~~~~~~l~~~~~P~~ 503 (534)
T d1v25a_ 469 RPLAVVVPRGE------------K---------------------------------PTPEELNEHLLKAGFAKWQLPDA 503 (534)
T ss_dssp EEEECC----------------------------------------------------------------CCCTTTSCSB
T ss_pred EEEEEEEeCCC------------C---------------------------------CCHHHHHHHHHHhcCCcCCCccE
Confidence 99999988764 1 11122344457889999999999
Q ss_pred EEEcCCCCCCCCchhhHHHHHHHHcC
Q psy8076 698 STSVTGLPRTRSGKTARKSIVDMARN 723 (737)
Q Consensus 698 ~~~v~~lP~t~sGKi~R~~l~~~~~~ 723 (737)
|+++++||+|++|||+|++||++|.+
T Consensus 504 i~~~~~lP~t~~GKi~R~~lr~~~~~ 529 (534)
T d1v25a_ 504 YVFAEEIPRTSAGKFLKRALREQYKN 529 (534)
T ss_dssp C--------------CCTTHHHHSTT
T ss_pred EEEECCCCCCCCccccHHHHHHHHHh
Confidence 99999999999999999999999864
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=7.3e-72 Score=634.22 Aligned_cols=505 Identities=18% Similarity=0.225 Sum_probs=401.8
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
.+.+.+++++ .. |+++|+++.. ..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 22 ~l~~~~~~~~-~~-P~~~a~~d~~----~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~~ 95 (541)
T d1lcia_ 22 QLHKAMKRYA-LV-PGTIAFTDAH----IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFI 95 (541)
T ss_dssp HHHHHHHHHH-TS-TTCEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHHH
T ss_pred HHHHHHHhhC-CC-CCeEEEEeCC----CCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 3444444444 33 8888988754 2378999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|+++.++.+++.++|++++++++|+++. ....+.++...++ ....++++..... .....
T Consensus 96 G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~ 159 (541)
T d1lcia_ 96 GVAVAPANDIYNERELLNSMNISQPTVVFVSKK---------GLQKILNVQKKLP-IIQKIIIMDSKTD------YQGFQ 159 (541)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEECGG---------GHHHHHHHHHHCT-TCCEEEETTCSSC------BTTBE
T ss_pred CeEEEecCCCCCHHHHHHHHHhccceEEeeecc---------ccccchhcccccc-ccceeeeecCCcc------ccccc
Confidence 999999999999999999999999999999875 3456666677777 6677776654311 01112
Q ss_pred cHHHHHhhcCC--------CCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhh--hhc
Q psy8076 238 LWDDALAQRLS--------HRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSV--IYN 307 (737)
Q Consensus 238 ~~~~~~~~~~~--------~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~--~~~ 307 (737)
.+.+....... .+.....+++++|++||||||| .||||+++|++++....+.... ...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~PKgV~~s~~~l~~~~~~~~~~~~~~~ 227 (541)
T d1lcia_ 160 SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTG------------LPKGVALPHRTACVRFSHARDPIFGNQ 227 (541)
T ss_dssp EHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----------------CCCEEEEEHHHHHHHHHHHTCTTTSCC
T ss_pred hhhhhhhhhccccccccccCccccCCCCceEEEEeeccccc------------cccccccccchhhhhhhhhhhhccccc
Confidence 22222221111 1223355688999999999999 9999999998877665543332 235
Q ss_pred CCCCcEEEEecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCcc
Q psy8076 308 MGQDDVWWTASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTL 387 (737)
Q Consensus 308 ~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~ 387 (737)
+.+++++++.+|++|..+... .+..+..|+..+... ..+....+..+..+++|.+.++|+++..+......
T Consensus 228 ~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~--- 298 (541)
T d1lcia_ 228 IIPDTAILSVVPFHHGFGMFT-TLGYLICGFRVVLMY-----RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI--- 298 (541)
T ss_dssp CCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECS-----SCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCG---
T ss_pred ccccccccccccccccccccc-ccccccccccccccc-----ccccchhHHHHhhhhccccccCccccccccccccc---
Confidence 678999999999999988654 667777777777665 36889999999999999999999999999887654
Q ss_pred ccCCCCCCccEEEeecCCCCHHHHHHHHHhcCC-cccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcce
Q psy8076 388 GAQYSTDSLRYLFVAGEHCDHETKNWAEKSFNV-TMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVN 466 (737)
Q Consensus 388 ~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~-~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~ 466 (737)
...++++||.+++||+++++...+++.+.++. .+++.||+||+++.++... .....+ +++|+|+||++
T Consensus 299 -~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~----~~~~~~-~svG~p~~~~~----- 367 (541)
T d1lcia_ 299 -DKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITP----EGDDKP-GAVGKVVPFFE----- 367 (541)
T ss_dssp -GGSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECC----CC---C-CCCBEECTTCE-----
T ss_pred -cccccccceEEEecccccccccccccccccCCceeeecCCccccCceEEecC----cccCCC-CccccccCCCE-----
Confidence 55678999999999999999999999999875 6889999999998777643 233344 78999999988
Q ss_pred eeeeccccCccccccccccccccCCCCCCCCcccccceEEEEc-CCCCccCCCcceEEEEecCCCCCcccccccChhhhH
Q psy8076 467 IVMLNWLDGRAHCVRILPESLRKNVPKGQNATHFTSVEVRIIR-NDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFM 545 (737)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd-~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~ 545 (737)
++ |+| ++|++|+.|+.|||+|+|+ +++.||+++++.+.
T Consensus 368 ~~--------------------------------------i~d~d~~~~~~~g~~Gel~v~g~---~~~~gY~~~~~~~~ 406 (541)
T d1lcia_ 368 AK--------------------------------------VVDLDTGKTLGVNQRGELCVRGP---MIMSGYVNNPEATN 406 (541)
T ss_dssp EE--------------------------------------EECTTTCCBCCTTCCEEEEEEST---TSCSEETTBHHHHH
T ss_pred EE--------------------------------------EEECCCCcCCCCCCeEEEEEccC---ccCCeeCCChhhhh
Confidence 77 999 5699999999999999999 99999999988776
Q ss_pred HhhccCCCCeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEe
Q psy8076 546 KIYFTKFPGYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIK 625 (737)
Q Consensus 546 ~~~~~~~~g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~ 625 (737)
..+. .+|||+|||+|++++||+++++||.||+||++|++|+|.|||++|.+||+|.+|+|++++++..++.++|+|++
T Consensus 407 ~~~~--~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~ 484 (541)
T d1lcia_ 407 ALID--KDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 484 (541)
T ss_dssp HHBC--TTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred hccc--CCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEE
Confidence 6553 37899999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred ecCCCCcCCccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCce-eeeeEEEcCCC
Q psy8076 626 KRIPLDKMGFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIA-AFKLSTSVTGL 704 (737)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~p~~~~~v~~l 704 (737)
+++ .. ...++|+++++++|+++. +|..++++++|
T Consensus 485 ~~~------------~~---------------------------------~~~~~l~~~~~~~l~~~~~~p~~i~~v~~l 519 (541)
T d1lcia_ 485 EHG------------KT---------------------------------MTEKEIVDYVASQVTTAKKLRGGVVFVDEV 519 (541)
T ss_dssp CTT------------CC---------------------------------CCHHHHHHHHHHHSCGGGSCTTEEEEESSC
T ss_pred CCC------------CC---------------------------------CCHHHHHHHHHHhCCccccCCcEEEEeCCC
Confidence 765 11 124578999999998764 79999999999
Q ss_pred CCCCCchhhHHHHHHHHcCC
Q psy8076 705 PRTRSGKTARKSIVDMARNK 724 (737)
Q Consensus 705 P~t~sGKi~R~~l~~~~~~~ 724 (737)
|+|++|||||++|++++.++
T Consensus 520 P~t~~GKi~r~~l~~~~~~~ 539 (541)
T d1lcia_ 520 PKGLTGKLDARKIREILIKA 539 (541)
T ss_dssp CC-----CCHHHHHHHHHHH
T ss_pred CcCCCcCccHHHHHHHHHHh
Confidence 99999999999999998754
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=3.6e-69 Score=608.26 Aligned_cols=482 Identities=18% Similarity=0.242 Sum_probs=395.9
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++|+++ ||++|+++.+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 24 tl~~l~~~~a~~~-Pd~~Al~~~~------~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~ 96 (514)
T d1amua_ 24 TIHQLFEEQVSKR-PNNVAIVCEN------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKA 96 (514)
T ss_dssp CHHHHHHHHHHHC-TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHhC-CCCeEEEECC------eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHh
Confidence 5889999999998 9999999987 89999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|+++.++.+++.+++++++++++|++.... . .+.... ...........
T Consensus 97 G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~----~~~~~~-~~~~~~~~~~~------------- 149 (514)
T d1amua_ 97 GGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLV---------H----LIHNIQ-FNGQVEIFEED------------- 149 (514)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------H----HHTTSC-CCSEEEECCCS-------------
T ss_pred CcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhh---------h----hhhhhc-ccccccccccc-------------
Confidence 99999999999999999999999999999986421 1 111111 11111111100
Q ss_pred cHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEe
Q psy8076 238 LWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317 (737)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~ 317 (737)
............+..++++++|+||||||| .||+|+++|.++..... .....+++..+|++++.
T Consensus 150 ---~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG------------~PK~v~~s~~~~~~~~~-~~~~~~~~~~~d~~l~~ 213 (514)
T d1amua_ 150 ---TIKIREGTNLHVPSKSTDLAYVIYTSGTTG------------NPKGTMLEHKGISNLKV-FFENSLNVTEKDRIGQF 213 (514)
T ss_dssp ---TTTTSCCSCCCCCCCTTSEEEEEEEC-----------------CEEEEEESHHHHHHHH-HHHHTSCCCTTCEEEEC
T ss_pred ---cccccccccCCCCCCcccceEEEEccCCCC------------Ccccccccccccccccc-cccccccccccccccce
Confidence 000011112334467889999999999999 99999999987555544 45666889999999999
Q ss_pred cccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCcc
Q psy8076 318 SDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSLR 397 (737)
Q Consensus 318 ~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~Lr 397 (737)
.|++|..++. .++.++..|+++++..... ..+...+++.+..+.++.+..+|...... ...+++++|
T Consensus 214 ~p~~~~~~~~-~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~ 280 (514)
T d1amua_ 214 ASISFDASVW-EMFMALLTGASLYIILKDT--INDFVKFEQYINQKEITVITLPPTYVVHL----------DPERILSIQ 280 (514)
T ss_dssp SCTTSTHHHH-HHHHHHTTTCEEEECCHHH--HTCHHHHHHHHHHTTCCEEEECHHHHTTS----------CTTTCCSCS
T ss_pred eccccccccc-ccccccccccccccccccc--ccchhhhhhhhhhhhcccccceeeecccc----------ccccccccc
Confidence 9999999854 4788899999998876422 25678899999999999999999865532 344688999
Q ss_pred EEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCcc
Q psy8076 398 YLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGRA 477 (737)
Q Consensus 398 ~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~~ 477 (737)
.+++||+++++++.+++.+ +..+++.||+||++..++..... ........+.|.+.++.. +.
T Consensus 281 ~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-----v~--------- 342 (514)
T d1amua_ 281 TLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVAT--KETIGHSVPIGAPIQNTQ-----IY--------- 342 (514)
T ss_dssp EEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECC--SSCCCSSCCCBEECTTEE-----EE---------
T ss_pred EEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeeeecccc--ccccCcccccccceeeee-----Ee---------
Confidence 9999999999999988776 57899999999999877654331 111111134555555554 44
Q ss_pred ccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhc----cCCC
Q psy8076 478 HCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYF----TKFP 553 (737)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~----~~~~ 553 (737)
+.|+++++++.|+.|||+|+|| .++.|||++++.+.+.|. .+.+
T Consensus 343 -----------------------------~~d~~~~~~~~g~~GEl~v~~~---~~~~gY~~~~~~~~~~~~~~~~~~~~ 390 (514)
T d1amua_ 343 -----------------------------IVDENLQLKSVGEAGELCIGGE---GLARGYWKRPELTSQKFVDNPFVPGE 390 (514)
T ss_dssp -----------------------------EECTTSCBCCTTCEEEEEEEET---TCCCEETTCHHHHHHHEEECSSSTTS
T ss_pred -----------------------------eecccceecCCCCeeEEEEccC---cccccccccccccceeeEeccccCCC
Confidence 9999999999999999999999 999999999998877764 3457
Q ss_pred CeeecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcC
Q psy8076 554 GYYDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKM 633 (737)
Q Consensus 554 g~~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~ 633 (737)
|||+|||+|++|+||+|+|+||+||+||++|++|+|.+||++|.+||+|.||+|++.+++..++.++|+|+++++
T Consensus 391 ~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~----- 465 (514)
T d1amua_ 391 KLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH----- 465 (514)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSC-----
T ss_pred ceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCC-----
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CccccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHhcCCceeeeeEEEcCCCCCCCCchhh
Q psy8076 634 GFSGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREAIGPIAAFKLSTSVTGLPRTRSGKTA 713 (737)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~v~~lP~t~sGKi~ 713 (737)
. ..++|+++++++|+.|++|..++++++||+|++|||+
T Consensus 466 -------~-----------------------------------~~~~l~~~~~~~l~~~~~p~~i~~v~~lP~t~~GKi~ 503 (514)
T d1amua_ 466 -------I-----------------------------------PLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKID 503 (514)
T ss_dssp -------C-----------------------------------CHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBC
T ss_pred -------C-----------------------------------CHHHHHHHHHhhCCcccCceEEEEeCCCCCCCCcChh
Confidence 2 1567899999999999999999999999999999999
Q ss_pred HHHHHH
Q psy8076 714 RKSIVD 719 (737)
Q Consensus 714 R~~l~~ 719 (737)
|++|++
T Consensus 504 R~~L~~ 509 (514)
T d1amua_ 504 RKQLPE 509 (514)
T ss_dssp GGGSCC
T ss_pred HHhcCC
Confidence 999887
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.8e-69 Score=613.65 Aligned_cols=504 Identities=21% Similarity=0.276 Sum_probs=413.3
Q ss_pred HHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHHc
Q psy8076 78 ACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVRL 157 (737)
Q Consensus 78 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 157 (737)
++.++|+++++++ ||++|+++.+ +++||+||+++++++|++|.++|+++||+|+|+++|++++++++|||+++
T Consensus 26 tl~~~l~~~a~~~-pd~~Al~~~~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~ 98 (536)
T d1mdba_ 26 TFGDLLRDRAAKY-GDRIAITCGN------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRL 98 (536)
T ss_dssp CHHHHHHHHHHHH-TTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHC-CCCeEEEECC------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHh
Confidence 4799999999999 9999999976 89999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCcc
Q psy8076 158 GAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYDI 237 (737)
Q Consensus 158 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~~ 237 (737)
|++++|++|.++.+++.+++++++++++++++..... .............+ .+...+..... ....
T Consensus 99 G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~---------~~~~ 164 (536)
T d1mdba_ 99 GALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGF----DYRSLARQVQSKLP-TLKNIIVAGEA---------EEFL 164 (536)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTE----EHHHHHHHHHHHCT-TCCCEEEESCC---------TTSE
T ss_pred CcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhh----hhhhhhhhhhhccc-cccceeeeecc---------cccc
Confidence 9999999999999999999999999999998754321 11222233333333 33333322211 0111
Q ss_pred cHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhhhhcCCCCcEEEEe
Q psy8076 238 LWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSVIYNMGQDDVWWTA 317 (737)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~ 317 (737)
.+.+.. .......+..++++++|+||||||| .||||+++|++++.+... ....+++.++|++++.
T Consensus 165 ~~~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG------------~PKgV~~s~~~~~~~~~~-~~~~~~~~~~d~~l~~ 229 (536)
T d1mdba_ 165 PLEDLH--TEPVKLPEVKSSDVAFLQLSGGSTG------------LSKLIPRTHDDYIYSLKR-SVEVCWLDHSTVYLAA 229 (536)
T ss_dssp EGGGCC--CCCCCCCCCCTTSEEEEEECCCSSS------------SCCEEEEEHHHHHHHHHH-HHHHHTCCTTCEEEEC
T ss_pred chhhcc--cCCcCCCccCccchHHhhhcccccc------------cceecccccccccccccc-cccccccccccccccc
Confidence 111111 1112344577899999999999999 999999999887766654 5666899999999999
Q ss_pred cccccccchhhhhhhcccc-CcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCCc
Q psy8076 318 SDMGWVVGHSYICYGPLAA-GITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDSL 396 (737)
Q Consensus 318 ~~~~~~~g~~~~~~~~L~~-G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~L 396 (737)
.++.|.+++...++..+.. |.+++..+ .+++..++..+++++++.+..+|..+..+...... ....++++
T Consensus 230 ~~~~~~~~l~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 300 (536)
T d1mdba_ 230 LPMAHNYPLSSPGVLGVLYAGGRVVLSP-----SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASS----RRDDLSSL 300 (536)
T ss_dssp SCTTSHHHHHSSHHHHHHHTTCEEEECS-----SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHH----CCCCCTTC
T ss_pred cccccccceeeccccccccccccccccC-----CCCHHHHHHHHhhhccccccccchhhhhhhhhccc----cccccCcc
Confidence 9999999865444444444 55555544 37899999999999999999999999988776443 44567899
Q ss_pred cEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccCc
Q psy8076 397 RYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDGR 476 (737)
Q Consensus 397 r~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~~ 476 (737)
|.+++||+++++...+++.+.++...+..|+.+|.+..+..... ...... +++|.|+++.. ..
T Consensus 301 ~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~g~p~~~~~-----~~-------- 363 (536)
T d1mdba_ 301 QVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDD---PEEIIV-NTQGKPMSPYD-----ES-------- 363 (536)
T ss_dssp CEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTS---CHHHHH-HCCCEESSTTC-----EE--------
T ss_pred eeEEEeccccccccccchhhccCceeeecccccccccccccccc---cccccc-CCcccCCCCcc-----eE--------
Confidence 99999999999999999999999999999999998755544321 122222 67888876544 22
Q ss_pred cccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCee
Q psy8076 477 AHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGYY 556 (737)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~~ 556 (737)
.|.+++|++++.|+.|||+++|+ .++.||+++++.+...+. .+|||
T Consensus 364 -----------------------------~v~~~~g~~~~~~~~Gel~v~g~---~~~~gY~~~~~~~~~~~~--~~~~~ 409 (536)
T d1mdba_ 364 -----------------------------RVWDDHDRDVKPGETGHLLTRGP---YTIRGYYKAEEHNAASFT--EDGFY 409 (536)
T ss_dssp -----------------------------EEECTTSCBCCTTCCEEEEEECT---TSCSSCTTCHHHHHHHBC--TTSCE
T ss_pred -----------------------------EEEcCCCCeecccccceeecCCC---cccccccccccccccccc--ccCcc
Confidence 27778999999999999999999 999999999988777654 38999
Q ss_pred ecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCcc
Q psy8076 557 DTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGFS 636 (737)
Q Consensus 557 ~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~ 636 (737)
+|||++++++||+|+++||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++|+|+++++
T Consensus 410 ~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~-------- 481 (536)
T d1mdba_ 410 RTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-------- 481 (536)
T ss_dssp EEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSS--------
T ss_pred ccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCC--------
Confidence 999999999999999999999999999999999999999999999999999999998889999999998765
Q ss_pred ccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHHHh-cCCceeeeeEEEcCCCCCCCCchhhHH
Q psy8076 637 GLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVREA-IGPIAAFKLSTSVTGLPRTRSGKTARK 715 (737)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~v~~lP~t~sGKi~R~ 715 (737)
.. ..++|+++++++ |+.|++|+.|+++++||+|++|||+|+
T Consensus 482 ----~~----------------------------------~~~~l~~~l~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~ 523 (536)
T d1mdba_ 482 ----AP----------------------------------KAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKK 523 (536)
T ss_dssp ----CC----------------------------------CHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHH
T ss_pred ----CC----------------------------------CHHHHHHHHHhcCCCcCcCccEEEEECCCCcCCCcCccHH
Confidence 11 246788888875 999999999999999999999999999
Q ss_pred HHHHHHcC
Q psy8076 716 SIVDMARN 723 (737)
Q Consensus 716 ~l~~~~~~ 723 (737)
+|++++.+
T Consensus 524 ~L~~~~~~ 531 (536)
T d1mdba_ 524 ALREAISE 531 (536)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999864
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=5.2e-66 Score=579.10 Aligned_cols=499 Identities=21% Similarity=0.245 Sum_probs=401.7
Q ss_pred hHHHHHHhhhhhccCCCceEEEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCHHHHHHHHHHHH
Q psy8076 77 NACYNAIDRHVERGMAKKVALIHDSPVTKSIRKVTYAELQEQVSLLAGSLAAIGVSAGDRVLIYMPLIPEAIVSMLATVR 156 (737)
Q Consensus 77 n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~ 156 (737)
++++++|+++++++ ||++|+++.+ ..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 2 ~ti~~~l~~~a~~~-pd~~al~~~~----~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~ 76 (503)
T d3cw9a1 2 QTVNEMLRRAATRA-PDHCALAVPA----RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHR 76 (503)
T ss_dssp CCHHHHHHHHHHHS-TTSEEEEEGG----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC-CCCeEEEECC----CCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 46899999999999 9999999875 237899999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHhhcCCcEEEEcCCcccCCccccchHHHHHHHHhcCCCCCeEEEEecccccccccCCCCc
Q psy8076 157 LGAIHSVVFGGFAARELCARLEHAKPKVIIAASCGVEPNKVVRYKTILNEALEISSCKPDYCIIFQRRCVEEAELTPGYD 236 (737)
Q Consensus 157 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~~~~~~~~~~~~~~~~ 236 (737)
+|++++|++|.++++++.+++++++++++|++... .......... ...+++.+........
T Consensus 77 ~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~-----------~~~~~~~~~~-~~~~~i~~~~~~~~~~------- 137 (503)
T d3cw9a1 77 LGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGR-----------QVADAIFQSG-SGARIIFLGDLVRDGE------- 137 (503)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCH-----------HHHHHHHHTT-CCCEEEEHHHHEETTE-------
T ss_pred hCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecch-----------HHHHHHhhhc-cccccccchhhhhhhc-------
Confidence 99999999999999999999999999999988641 1222222222 3344444322100000
Q ss_pred ccHHHHHhhcCCCCCccccCCCCeEEEecCCCCCCCCcccCcccCCCCceeeccCchhHHHHHHHHhh-hhcCCCCcEEE
Q psy8076 237 ILWDDALAQRLSHRCVPVEANDPLYILYTSGTTGKPQGCSELRSEDQPKGILRPVGGHIATLAWTMSV-IYNMGQDDVWW 315 (737)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p~~~~~~~~~~~PKgV~~th~~~~~~~~~~~~~-~~~~~~~d~~l 315 (737)
..............++++++++||||||| .||+|+++|+++.......... .......++++
T Consensus 138 -----~~~~~~~~~~~~~~~~~~a~i~~TSGTTG------------~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (503)
T d3cw9a1 138 -----PYSYGPPIEDPQREPAQPAFIFYTSGTTG------------LPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVL 200 (503)
T ss_dssp -----ECCCSCCCCCCCCCTTSEEEEEEECCSSS------------SCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEE
T ss_pred -----ccccCCccccccchhhhhhhhcccccccc------------cccccccccchhhhhhhhcccccccccccccccc
Confidence 00011112334567899999999999999 9999999998876666543332 23445668999
Q ss_pred EecccccccchhhhhhhccccCcEEEEecCCCCCCCChhHHHHHHHhcCCcEEeecHHHHHHHHHcCCCCccccCCCCCC
Q psy8076 316 TASDMGWVVGHSYICYGPLAAGITSVMYEGKPDRTPDPSQYYRVIHNHKVNGLFTAPTALRVIRREDKDSTLGAQYSTDS 395 (737)
Q Consensus 316 ~~~~~~~~~g~~~~~~~~L~~G~~~vl~~~~~~~~~~~~~~~~~i~~~~vt~l~~~P~~~~~l~~~~~~~~~~~~~~l~~ 395 (737)
..+|+.|..+.....+.+...++++++.+ ..++..++..+..++++.+..+|+.+..+........ ....+++
T Consensus 201 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 273 (503)
T d3cw9a1 201 GLMPLYHVVGFFAVLVAALALDGTYVVVE-----EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG--SSLKLDS 273 (503)
T ss_dssp ECSCTTSHHHHHTTHHHHHHTTCEEEECS-----SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTC--TTCCCTT
T ss_pred ccCcccccccccccccccccccccccccc-----ccChHHhhhhhhhceeecccccccccccccccccccc--ccccccc
Confidence 99999888887766677778888888765 3789999999999999999999999998766533222 4456789
Q ss_pred ccEEEeecCCCCHHHHHHHHHhcCCcccccccccccccccccccccCCCCCCCCCCccCCCcCCCCCCcceeeeeccccC
Q psy8076 396 LRYLFVAGEHCDHETKNWAEKSFNVTMLNHWWQTETGHSITAHCLGYQHDTVPPKYSTGLPFPGYDGKYVNIVMLNWLDG 475 (737)
Q Consensus 396 Lr~i~~gGe~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~~~~~~~~~~~~~ 475 (737)
||.+++||++++++...++.+.++..+.+.||+||++..+..... ..... ...+.+.+... ..
T Consensus 274 Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~----~~~~~-~~~~~~~~~~~-----~~------- 336 (503)
T d3cw9a1 274 LRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQP----KTGTE-MAPGFFSEVRI-----VR------- 336 (503)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESC----SSSSE-EBCCTTCCEEE-----EC-------
T ss_pred eEEEEeccccccccccccccccccccccccccccccceeeeeccc----ccccc-cccccccccee-----ee-------
Confidence 999999999999999999999999999999999999876665432 11111 22222222222 22
Q ss_pred ccccccccccccccCCCCCCCCcccccceEEEEcCCCCccCCCcceEEEEecCCCCCcccccccChhhhHHhhccCCCCe
Q psy8076 476 RAHCVRILPESLRKNVPKGQNATHFTSVEVRIIRNDGSECEPHELGRIVVKLPLPPGTMSTLYKAPQRFMKIYFTKFPGY 555 (737)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivd~~g~~~~~g~~GEL~i~g~~~~~~~~gy~~~~~~~~~~~~~~~~g~ 555 (737)
+.+..++.++.|+.|++.+.+.. ....+|+++++.+.+.+ .+||
T Consensus 337 -------------------------------~~~~~~~~~~~g~~g~~~~~~~~--~~~~~~~~~~~~t~~~~---~~g~ 380 (503)
T d3cw9a1 337 -------------------------------IGGGVDEIVANGEEGELIVAASD--SAFVGYLNQPQATAEKL---QDGW 380 (503)
T ss_dssp -------------------------------TTSCTTCBCCTTCCEEEEEECCT--TSCCCBTTCHHHHHHHE---ETTE
T ss_pred -------------------------------eecccCcccCCCccccccccccc--cccccccCChhhhHHHh---cCCc
Confidence 55677889999999999888772 67788999988887765 3799
Q ss_pred eecCceEEEecCceEEEEeecCCeEeeCcEEechHHHHHHHhcCCCcceeEEecccCCCCCcceEEEEEeecCCCCcCCc
Q psy8076 556 YDTMDAGYYDENGYIYVTARDDDVINVAGHRLSTSALEDVVLSHPDVGDTAVIGVPEPTKGEIPFCLYIKKRIPLDKMGF 635 (737)
Q Consensus 556 ~~TGDl~~~~~dG~l~i~GR~dd~Ik~~G~rv~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~ 635 (737)
|+|||+|++++||+|+++||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++..|+.++|||+++.+
T Consensus 381 ~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~------- 453 (503)
T d3cw9a1 381 YRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLG------- 453 (503)
T ss_dssp EEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTT-------
T ss_pred eecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCC-------
Confidence 9999999999999999999999999999999999999999999999999999999998889999999998765
Q ss_pred cccccccccCCCCccCCCccccccCCCCCCcccccCCChHHHHHHHHHHHH-HhcCCceeeeeEEEcCCCCCCCCchhhH
Q psy8076 636 SGLIGFGKLERPTSLLTNPIRVLIKPYGPISSIYCTRSDEEIGKELKELVR-EAIGPIAAFKLSTSVTGLPRTRSGKTAR 714 (737)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~l~~~~~p~~~~~v~~lP~t~sGKi~R 714 (737)
.. ...++|+++++ ++|+.|++|+.|+++++||+|++|||+|
T Consensus 454 -----~~---------------------------------~~~~~l~~~~~~~~l~~~~~P~~i~~v~~~P~t~~GKi~R 495 (503)
T d3cw9a1 454 -----ET---------------------------------LSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLR 495 (503)
T ss_dssp -----CC---------------------------------CCHHHHHHHHHHSSSCGGGSCSEEEECSCCCBCTTSCBCH
T ss_pred -----CC---------------------------------CCHHHHHHHHHhcCCCCCCCccEEEEECCCCcCCCcCccH
Confidence 11 12467888885 6899999999999999999999999999
Q ss_pred HHHHHHH
Q psy8076 715 KSIVDMA 721 (737)
Q Consensus 715 ~~l~~~~ 721 (737)
++|++++
T Consensus 496 ~~L~~~~ 502 (503)
T d3cw9a1 496 RQLVQQV 502 (503)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999986
|