Psyllid ID: psy8082

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
MGDWSHCVANLKDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVARRVQLEGKNSSERKSNSAFVSWFKNNGNERGVFGLAMKEVYVPLPLHKLIVPISPDKCRYSTDSFGL
ccccccccccccccccEEEEccccccEEcccccccccccEEEEccEEEccccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHccccccccEEEccccccEEEEEEEcccccEEEEEcccccccccHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHHcccEEEEccccccccccHHHHHcccEEEccHHHHHHHHccccccHHHHHHHHHHHHHccccEEEEEcccccEEEEEcccccEEEEcccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccc
ccccHHcHHHcccccEEEEEcccEEEEEEEcccccccccEEEccEEEEEEEcHHHHHHHHHHHHccEEEEEEEEEccHHHHHHHHHHHccccccccEEEEEcccccEEEEEEEccccccEEEEEccccccccHHHHHHHHHHHHHccEEEEEEcccHHHHHHHHHHHHHHHHcccEEEEccccccccccHHHHccccEEcccHHHHHHHHccccccHHHHHHHHHHHHHccccEEEEEcHHHcEEEEEccccEEEEEccccEEEEEccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccEEEEEccEEEEccccccEEEEEcccccccEccccccc
mgdwshcvanlkdeaDIVVVGSCLVEFITYVqtlpkpeetvkgyhfeqrfsgkgaNQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVIsnkgthqtniipgantylsasDIDAAKNLLLKAKVIMFqgetpwetTLYCLSKLHVSLESRAkiivnpspavyplnpIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGgsgvvyatrdnprlktitvdhveypiesegvgdCFVGALAYYFkagqkggnldscrlrnGRGILKELQCLVARRVQlegknsserksnSAFVSWFKnngnergvFGLAMkevyvplplhklivpispdkcrystdsfgl
MGDWSHCVANLKDEADIVVVGSCLVEFITYVqtlpkpeetVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNkgthqtniiPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLggsgvvyatrdnpRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVARRVqlegknsserksnsafVSWFKNNGNERGVFGLAMKEVYVPLPLhklivpispdkcrystdsfgl
MGDWSHCVANLKDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVARRVQLEGKNSSERKSNSAFVSWFKNNGNERGVFGLAMKEVYVPLPLHKLIVPISPDKCRYSTDSFGL
***WSHCVANLKDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVARRVQL************AFVSWFKNNGNERGVFGLAMKEVYVPLPLHKLIVPISPDKC*********
****************IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVARRVQLEGKNSSERKSNSAFVSWFK**GNERGVFGLAMKEVYVPLPLHKLIVPISPDKCRYS*DSFGL
MGDWSHCVANLKDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVARRVQL***********SAFVSWFKNNGNERGVFGLAMKEVYVPLPLHKLIVPISPDKCRYSTDSFGL
***********KDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVARRVQLEGKNSSERKSNSAFVSWFKNNGNERGVFGLAMKEVYVPLPLHKLIVPISPDKCRYS******
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MGDWSHCVANLKDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVARRVQLEGKNSSERKSNSAFVSWFKNNGNERGVFGLAMKEVYVPLPLHKLIVPISPDKCRYSTDSFGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query379 2.2.26 [Sep-21-2011]
Q9H477322 Ribokinase OS=Homo sapien yes N/A 0.680 0.801 0.384 3e-48
Q8R1Q9323 Ribokinase OS=Mus musculu yes N/A 0.680 0.798 0.376 1e-46
P0A9J6309 Ribokinase OS=Escherichia N/A N/A 0.678 0.831 0.318 1e-31
P0A9J7309 Ribokinase OS=Escherichia N/A N/A 0.678 0.831 0.318 1e-31
Q54UQ4318 Probable ribokinase OS=Di yes N/A 0.699 0.833 0.281 2e-24
P44331306 Ribokinase OS=Haemophilus yes N/A 0.670 0.830 0.295 5e-24
Q9K6K1294 Ribokinase OS=Bacillus ha yes N/A 0.646 0.833 0.312 3e-22
P36945293 Ribokinase OS=Bacillus su yes N/A 0.659 0.853 0.318 2e-20
Q9CF42300 Ribokinase OS=Lactococcus yes N/A 0.643 0.813 0.294 4e-18
P25332333 Probable ribokinase OS=Sa yes N/A 0.699 0.795 0.269 4e-17
>sp|Q9H477|RBSK_HUMAN Ribokinase OS=Homo sapiens GN=RBKS PE=1 SV=1 Back     alignment and function desciption
 Score =  192 bits (489), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 101/263 (38%), Positives = 156/263 (59%), Gaps = 5/263 (1%)

Query: 21  GSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFG 80
           GSC+ + ++    LPK  ET+ G+ F   F GKGANQCV AA+L A  +++ K+G D FG
Sbjct: 22  GSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFG 81

Query: 81  KSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAK 140
             Y+E L++ N I+T++ +  +D  TG  S +++N+G +   I+ GAN  L+  D+ AA 
Sbjct: 82  NDYIENLKQ-NDISTEFTYQTKDAATGTASIIVNNEGQNIIVIVAGANLLLNTEDLRAAA 140

Query: 141 NLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIIC 200
           N++ +AKV++ Q E    T+L  L+   ++  S  K + NP+PA+  L+P    L+D+ C
Sbjct: 141 NVISRAKVMVCQLEITPATSLEALT---MARRSGVKTLFNPAPAIADLDPQFYTLSDVFC 197

Query: 201 INEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVD 260
            NE EAEI+T + + +  D  +    LL   C  VIITLG  G V  ++  P  K I  +
Sbjct: 198 CNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTEPEPKHIPTE 257

Query: 261 HVEYPIESEGVGDCFVGALAYYF 283
            V+  +++ G GD FVGALA+Y 
Sbjct: 258 KVK-AVDTTGAGDSFVGALAFYL 279

Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 5
>sp|Q8R1Q9|RBSK_MOUSE Ribokinase OS=Mus musculus GN=Rbks PE=1 SV=1 Back     alignment and function description
>sp|P0A9J6|RBSK_ECOLI Ribokinase OS=Escherichia coli (strain K12) GN=rbsK PE=1 SV=1 Back     alignment and function description
>sp|P0A9J7|RBSK_ECO57 Ribokinase OS=Escherichia coli O157:H7 GN=rbsK PE=3 SV=1 Back     alignment and function description
>sp|Q54UQ4|RBSK_DICDI Probable ribokinase OS=Dictyostelium discoideum GN=rbsk PE=3 SV=2 Back     alignment and function description
>sp|P44331|RBSK_HAEIN Ribokinase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rbsK PE=3 SV=1 Back     alignment and function description
>sp|Q9K6K1|RBSK_BACHD Ribokinase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=rbsK PE=3 SV=1 Back     alignment and function description
>sp|P36945|RBSK_BACSU Ribokinase OS=Bacillus subtilis (strain 168) GN=rbsK PE=3 SV=2 Back     alignment and function description
>sp|Q9CF42|RBSK_LACLA Ribokinase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=rbsK PE=3 SV=1 Back     alignment and function description
>sp|P25332|RBSK_YEAST Probable ribokinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RBK1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query379
307177258309 Ribokinase [Camponotus floridanus] 0.725 0.889 0.397 6e-52
322791122310 hypothetical protein SINV_01169 [Solenop 0.783 0.958 0.402 1e-51
380029291308 PREDICTED: ribokinase-like [Apis florea] 0.733 0.902 0.396 5e-51
194911965304 GG12798 [Drosophila erecta] gi|190648085 0.765 0.953 0.389 2e-50
195469533304 GE16624 [Drosophila yakuba] gi|194187216 0.754 0.940 0.385 1e-49
66517777308 PREDICTED: ribokinase-like [Apis mellife 0.759 0.935 0.365 3e-49
242020525312 Ribokinase, putative [Pediculus humanus 0.715 0.868 0.407 9e-49
156554200309 PREDICTED: ribokinase-like [Nasonia vitr 0.688 0.844 0.404 1e-48
195347414304 GM19077 [Drosophila sechellia] gi|194121 0.754 0.940 0.381 1e-48
327265240310 PREDICTED: ribokinase-like [Anolis carol 0.696 0.851 0.394 2e-48
>gi|307177258|gb|EFN66436.1| Ribokinase [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  211 bits (536), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 112/282 (39%), Positives = 174/282 (61%), Gaps = 7/282 (2%)

Query: 17  IVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGN 76
           IV+VGSC+++F  +   LPKP ET+ G  FE+++ GKG NQC+ AAKL  S ALI+ LG+
Sbjct: 5   IVIVGSCMIDFTCFSPRLPKPGETIVGTKFERKYGGKGGNQCITAAKLGGSTALIASLGS 64

Query: 77  DKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDI 136
           + F + YLE L+K N ++T ++ + +D  +G+    ++  G +   I+ GAN  L+   +
Sbjct: 65  ESFAQEYLEILKKEN-VDTSHVKIQKDKHSGIAHITVTEDGENSIVIVLGANESLTPEHV 123

Query: 137 DAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILA 196
           D+A +++  A V++ Q E P ETTL+ L KLH         I+N +PA+   +P ++ L+
Sbjct: 124 DSAVDVIKSASVLLCQFEIPLETTLHAL-KLH---RGHGFSIINGAPALKNFDPEILKLS 179

Query: 197 DIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKT 256
           D+ C+NE EAE+ T ++  N  ++    +KLL M CN +I+TLG  G VYA++ N  +  
Sbjct: 180 DLFCVNETEAEVTTGIQPVNLSNIQQVADKLLAMGCNAIILTLGPLGAVYASKANRNVTR 239

Query: 257 ITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLR 298
           I V  V +P+++ G GD F+GALA YFKA      +D C  R
Sbjct: 240 IPVTKV-HPVDTTGAGDAFLGALA-YFKAYHSHLAMDECIRR 279

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|322791122|gb|EFZ15684.1| hypothetical protein SINV_01169 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|380029291|ref|XP_003698310.1| PREDICTED: ribokinase-like [Apis florea] Back     alignment and taxonomy information
>gi|194911965|ref|XP_001982409.1| GG12798 [Drosophila erecta] gi|190648085|gb|EDV45378.1| GG12798 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195469533|ref|XP_002099692.1| GE16624 [Drosophila yakuba] gi|194187216|gb|EDX00800.1| GE16624 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|66517777|ref|XP_623681.1| PREDICTED: ribokinase-like [Apis mellifera] Back     alignment and taxonomy information
>gi|242020525|ref|XP_002430703.1| Ribokinase, putative [Pediculus humanus corporis] gi|212515893|gb|EEB17965.1| Ribokinase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|156554200|ref|XP_001600273.1| PREDICTED: ribokinase-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|195347414|ref|XP_002040248.1| GM19077 [Drosophila sechellia] gi|194121676|gb|EDW43719.1| GM19077 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|327265240|ref|XP_003217416.1| PREDICTED: ribokinase-like [Anolis carolinensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query379
UNIPROTKB|Q9H477322 RBKS "Ribokinase" [Homo sapien 0.701 0.826 0.391 1.1e-48
UNIPROTKB|F1PB12322 RBKS "Uncharacterized protein" 0.701 0.826 0.387 1.8e-48
MGI|MGI:1918586323 Rbks "ribokinase" [Mus musculu 0.701 0.823 0.383 6.9e-47
RGD|1310064323 Rbks "ribokinase" [Rattus norv 0.701 0.823 0.383 8.8e-47
UNIPROTKB|E1BJH7325 RBKS "Uncharacterized protein" 0.699 0.815 0.385 1.8e-46
FB|FBgn0025640304 CG13369 [Drosophila melanogast 0.688 0.858 0.400 2.1e-45
UNIPROTKB|F1PB14335 RBKS "Uncharacterized protein" 0.643 0.728 0.393 6.4e-44
UNIPROTKB|B4DV96286 RBKS "cDNA FLJ60169, highly si 0.654 0.867 0.380 2.2e-43
ZFIN|ZDB-GENE-040625-112311 rbks "ribokinase" [Danio rerio 0.704 0.858 0.345 4e-42
UNIPROTKB|F1N8A7309 RBKS "Uncharacterized protein" 0.656 0.805 0.377 1.4e-41
UNIPROTKB|Q9H477 RBKS "Ribokinase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 106/271 (39%), Positives = 162/271 (59%)

Query:    12 KDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALI 71
             ++ A +VVVGSC+ + ++    LPK  ET+ G+ F   F GKGANQCV AA+L A  +++
Sbjct:    13 EEVAAVVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMV 72

Query:    72 SKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYL 131
              K+G D FG  Y+E L K N I+T++ +  +D  TG  S +++N+G +   I+ GAN  L
Sbjct:    73 CKVGKDSFGNDYIENL-KQNDISTEFTYQTKDAATGTASIIVNNEGQNIIVIVAGANLLL 131

Query:   132 SASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPI 191
             +  D+ AA N++ +AKV++ Q E    T+L  L+   ++  S  K + NP+PA+  L+P 
Sbjct:   132 NTEDLRAAANVISRAKVMVCQLEITPATSLEALT---MARRSGVKTLFNPAPAIADLDPQ 188

Query:   192 VMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDN 251
                L+D+ C NE EAEI+T + + +  D  +    LL   C  VIITLG  G V  ++  
Sbjct:   189 FYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTE 248

Query:   252 PRLKTITVDHVEYPIESEGVGDCFVGALAYY 282
             P  K I  + V+  +++ G GD FVGALA+Y
Sbjct:   249 PEPKHIPTEKVK-AVDTTGAGDSFVGALAFY 278
GO:0005524 "ATP binding" evidence=IEA
GO:0004747 "ribokinase activity" evidence=IEA
GO:0019303 "D-ribose catabolic process" evidence=IEA
UNIPROTKB|F1PB12 RBKS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1918586 Rbks "ribokinase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1310064 Rbks "ribokinase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BJH7 RBKS "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0025640 CG13369 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1PB14 RBKS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B4DV96 RBKS "cDNA FLJ60169, highly similar to Ribokinase (EC 2.7.1.15)" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040625-112 rbks "ribokinase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8A7 RBKS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9K6K1RBSK_BACHD2, ., 7, ., 1, ., 1, 50.31270.64640.8333yesN/A
Q8R1Q9RBSK_MOUSE2, ., 7, ., 1, ., 1, 50.37640.68070.7987yesN/A
Q9H477RBSK_HUMAN2, ., 7, ., 1, ., 1, 50.38400.68070.8012yesN/A
P36945RBSK_BACSU2, ., 7, ., 1, ., 1, 50.31880.65960.8532yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.1.150.824
3rd Layer2.7.10.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query379
cd01174292 cd01174, ribokinase, Ribokinase catalyses the phos 2e-79
TIGR02152293 TIGR02152, D_ribokin_bact, ribokinase 3e-72
PTZ00292326 PTZ00292, PTZ00292, ribokinase; Provisional 2e-64
COG0524311 COG0524, RbsK, Sugar kinases, ribokinase family [C 3e-46
PRK11142306 PRK11142, PRK11142, ribokinase; Provisional 3e-43
pfam00294298 pfam00294, PfkB, pfkB family carbohydrate kinase 3e-39
cd01166294 cd01166, KdgK, 2-keto-3-deoxygluconate kinase (Kdg 1e-23
cd01941288 cd01941, YeiC_kinase_like, YeiC-like sugar kinase 3e-22
cd01942279 cd01942, ribokinase_group_A, Ribokinase-like subgr 1e-19
cd01167295 cd01167, bac_FRK, Fructokinases (FRKs) mainly from 7e-19
cd01168312 cd01168, adenosine_kinase, Adenosine kinase (AK) c 3e-16
cd01945284 cd01945, ribokinase_group_B, Ribokinase-like subgr 9e-16
cd01164289 cd01164, FruK_PfkB_like, 1-phosphofructokinase (Fr 1e-10
cd00287196 cd00287, ribokinase_pfkB_like, ribokinase/pfkB sup 2e-10
TIGR03168303 TIGR03168, 1-PFK, hexose kinase, 1-phosphofructoki 2e-08
cd01172304 cd01172, RfaE_like, RfaE encodes a bifunctional AD 3e-08
cd01947265 cd01947, Guanosine_kinase_like, Guanosine kinase-l 4e-08
COG2240281 COG2240, PdxK, Pyridoxal/pyridoxine/pyridoxamine k 1e-07
PTZ00247345 PTZ00247, PTZ00247, adenosine kinase; Provisional 2e-07
PLN02323330 PLN02323, PLN02323, probable fructokinase 2e-07
COG1105310 COG1105, FruK, Fructose-1-phosphate kinase and rel 3e-07
cd01173254 cd01173, pyridoxal_pyridoxamine_kinase, Pyridoxal 3e-07
PRK09434304 PRK09434, PRK09434, aminoimidazole riboside kinase 4e-07
TIGR03828304 TIGR03828, pfkB, 1-phosphofructokinase 5e-07
cd00287196 cd00287, ribokinase_pfkB_like, ribokinase/pfkB sup 2e-06
pfam08543246 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine k 3e-06
TIGR00097254 TIGR00097, HMP-P_kinase, phosphomethylpyrimidine k 3e-05
TIGR00687286 TIGR00687, pyridox_kin, pyridoxal kinase 1e-04
cd01169242 cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-me 2e-04
PRK06427266 PRK06427, PRK06427, bifunctional hydroxy-methylpyr 3e-04
COG0351263 COG0351, ThiD, Hydroxymethylpyrimidine/phosphometh 6e-04
cd01944289 cd01944, YegV_kinase_like, YegV-like sugar kinase 8e-04
PLN02341470 PLN02341, PLN02341, pfkB-type carbohydrate kinase 9e-04
PLN02967581 PLN02967, PLN02967, kinase 0.003
>gnl|CDD|238579 cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP Back     alignment and domain information 
 Score =  245 bits (628), Expect = 2e-79
 Identities = 103/275 (37%), Positives = 143/275 (52%), Gaps = 16/275 (5%)

Query: 16  DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLG 75
            +VVVGS  V+ +T V  LPKP ETV G  FE    GKGANQ VAAA+L A VA+I  +G
Sbjct: 1   KVVVVGSINVDLVTRVDRLPKPGETVLGSSFETGPGGKGANQAVAAARLGARVAMIGAVG 60

Query: 76  NDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASD 135
           +D FG   LE LR+   I+  Y+ ++    TG     +   G ++  ++PGAN  L+ +D
Sbjct: 61  DDAFGDELLENLREEG-IDVSYVEVVVGAPTGTAVITVDESGENRIVVVPGANGELTPAD 119

Query: 136 IDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMIL 195
           +DAA  L+  A V++ Q E P ET L  L        +   +I+NP+PA      ++  L
Sbjct: 120 VDAALELIAAADVLLLQLEIPLETVLAALRAAR---RAGVTVILNPAPARPLPAELLA-L 175

Query: 196 ADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDN---- 251
            DI+  NE EA ++T +++ +EED       LL      VI+TLG  G + A+       
Sbjct: 176 VDILVPNETEAALLTGIEVTDEEDAEKAARLLLAKGVKNVIVTLGAKGALLASGGEVEHV 235

Query: 252 PRLKTITVDHVEYPIESEGVGDCFVGALAYYFKAG 286
           P  K   VD         G GD F+GALA     G
Sbjct: 236 PAFKVKAVDTT-------GAGDTFIGALAAALARG 263

This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution. Length = 292
>gnl|CDD|233751 TIGR02152, D_ribokin_bact, ribokinase Back     alignment and domain information
>gnl|CDD|185541 PTZ00292, PTZ00292, ribokinase; Provisional Back     alignment and domain information
>gnl|CDD|223598 COG0524, RbsK, Sugar kinases, ribokinase family [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|236858 PRK11142, PRK11142, ribokinase; Provisional Back     alignment and domain information
>gnl|CDD|215842 pfam00294, PfkB, pfkB family carbohydrate kinase Back     alignment and domain information
>gnl|CDD|238571 cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP) Back     alignment and domain information
>gnl|CDD|238916 cd01941, YeiC_kinase_like, YeiC-like sugar kinase Back     alignment and domain information
>gnl|CDD|238917 cd01942, ribokinase_group_A, Ribokinase-like subgroup A Back     alignment and domain information
>gnl|CDD|238572 cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate Back     alignment and domain information
>gnl|CDD|238573 cd01168, adenosine_kinase, Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor Back     alignment and domain information
>gnl|CDD|238920 cd01945, ribokinase_group_B, Ribokinase-like subgroup B Back     alignment and domain information
>gnl|CDD|238570 cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases Back     alignment and domain information
>gnl|CDD|238177 cd00287, ribokinase_pfkB_like, ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group Back     alignment and domain information
>gnl|CDD|234133 TIGR03168, 1-PFK, hexose kinase, 1-phosphofructokinase family Back     alignment and domain information
>gnl|CDD|238577 cd01172, RfaE_like, RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose Back     alignment and domain information
>gnl|CDD|238922 cd01947, Guanosine_kinase_like, Guanosine kinase-like sugar kinases Back     alignment and domain information
>gnl|CDD|225149 COG2240, PdxK, Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|240328 PTZ00247, PTZ00247, adenosine kinase; Provisional Back     alignment and domain information
>gnl|CDD|215183 PLN02323, PLN02323, probable fructokinase Back     alignment and domain information
>gnl|CDD|224030 COG1105, FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|238578 cd01173, pyridoxal_pyridoxamine_kinase, Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP Back     alignment and domain information
>gnl|CDD|236514 PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional Back     alignment and domain information
>gnl|CDD|234367 TIGR03828, pfkB, 1-phosphofructokinase Back     alignment and domain information
>gnl|CDD|238177 cd00287, ribokinase_pfkB_like, ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group Back     alignment and domain information
>gnl|CDD|219893 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase Back     alignment and domain information
>gnl|CDD|232823 TIGR00097, HMP-P_kinase, phosphomethylpyrimidine kinase Back     alignment and domain information
>gnl|CDD|211599 TIGR00687, pyridox_kin, pyridoxal kinase Back     alignment and domain information
>gnl|CDD|238574 cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1 Back     alignment and domain information
>gnl|CDD|180561 PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed Back     alignment and domain information
>gnl|CDD|223428 COG0351, ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|238919 cd01944, YegV_kinase_like, YegV-like sugar kinase Back     alignment and domain information
>gnl|CDD|215195 PLN02341, PLN02341, pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>gnl|CDD|215521 PLN02967, PLN02967, kinase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 379
PRK11142306 ribokinase; Provisional 100.0
PTZ00292326 ribokinase; Provisional 100.0
cd01174292 ribokinase Ribokinase catalyses the phosphorylatio 100.0
TIGR02152293 D_ribokin_bact ribokinase. This model describes ri 100.0
PRK09850313 pseudouridine kinase; Provisional 100.0
KOG2855|consensus330 100.0
PLN02341470 pfkB-type carbohydrate kinase family protein 100.0
cd01945284 ribokinase_group_B Ribokinase-like subgroup B. Fou 100.0
cd01168312 adenosine_kinase Adenosine kinase (AK) catalyzes t 100.0
PLN02813426 pfkB-type carbohydrate kinase family protein 100.0
PF00294301 PfkB: pfkB family carbohydrate kinase; InterPro: I 100.0
PTZ00247345 adenosine kinase; Provisional 100.0
PLN02323330 probable fructokinase 100.0
PRK09954362 putative kinase; Provisional 100.0
cd01944289 YegV_kinase_like YegV-like sugar kinase. Found onl 100.0
PLN02967581 kinase 100.0
COG0524311 RbsK Sugar kinases, ribokinase family [Carbohydrat 100.0
PRK15074434 inosine/guanosine kinase; Provisional 100.0
PLN02543496 pfkB-type carbohydrate kinase family protein 100.0
cd01942279 ribokinase_group_A Ribokinase-like subgroup A. Fou 100.0
PRK09434304 aminoimidazole riboside kinase; Provisional 100.0
cd01166294 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phospho 100.0
TIGR03828304 pfkB 1-phosphofructokinase. This enzyme acts in co 100.0
TIGR02198315 rfaE_dom_I rfaE bifunctional protein, domain I. Rf 100.0
cd01939290 Ketohexokinase Ketohexokinase (fructokinase, KHK) 100.0
cd01941288 YeiC_kinase_like YeiC-like sugar kinase. Found in 100.0
cd01172304 RfaE_like RfaE encodes a bifunctional ADP-heptose 100.0
cd01167295 bac_FRK Fructokinases (FRKs) mainly from bacteria 100.0
PLN02379367 pfkB-type carbohydrate kinase family protein 100.0
cd01164289 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 100.0
cd01947265 Guanosine_kinase_like Guanosine kinase-like sugar 100.0
TIGR03168303 1-PFK hexose kinase, 1-phosphofructokinase family. 100.0
PRK09513312 fruK 1-phosphofructokinase; Provisional 100.0
cd01940264 Fructoselysine_kinase_like Fructoselysine kinase-l 100.0
PRK10294309 6-phosphofructokinase 2; Provisional 100.0
cd01943328 MAK32 MAK32 kinase. MAK32 is a protein found prima 100.0
TIGR01231309 lacC tagatose-6-phosphate kinase. This enzyme is p 100.0
PLN02548332 adenosine kinase 100.0
PRK13508309 tagatose-6-phosphate kinase; Provisional 100.0
PLN02630335 pfkB-type carbohydrate kinase family protein 100.0
PRK11316 473 bifunctional heptose 7-phosphate kinase/heptose 1- 100.0
PRK09813260 fructoselysine 6-kinase; Provisional 100.0
COG1105310 FruK Fructose-1-phosphate kinase and related fruct 100.0
cd01937254 ribokinase_group_D Ribokinase-like subgroup D. Fou 100.0
cd01946277 ribokinase_group_C Ribokinase-like subgroup C. Fou 100.0
COG2870 467 RfaE ADP-heptose synthase, bifunctional sugar kina 100.0
KOG2854|consensus343 99.98
KOG2947|consensus308 99.97
cd00287196 ribokinase_pfkB_like ribokinase/pfkB superfamily: 99.97
PRK12412268 pyridoxal kinase; Reviewed 99.8
PRK12413253 phosphomethylpyrimidine kinase; Provisional 99.78
TIGR00097254 HMP-P_kinase phosphomethylpyrimidine kinase. This 99.77
cd01173254 pyridoxal_pyridoxamine_kinase Pyridoxal kinase pla 99.77
cd01169242 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrim 99.76
TIGR00687286 pyridox_kin pyridoxal kinase. ThiD and related pro 99.75
PRK07105284 pyridoxamine kinase; Validated 99.74
PRK06427266 bifunctional hydroxy-methylpyrimidine kinase/ hydr 99.74
PRK05756286 pyridoxamine kinase; Validated 99.74
PRK08573 448 phosphomethylpyrimidine kinase; Provisional 99.73
PRK08176281 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpy 99.73
PRK12616270 pyridoxal kinase; Reviewed 99.7
KOG3009|consensus614 99.67
PTZ00347504 phosphomethylpyrimidine kinase; Provisional 99.57
PTZ00344296 pyridoxal kinase; Provisional 99.55
PLN02898 502 HMP-P kinase/thiamin-monophosphate pyrophosphoryla 99.54
cd01171254 YXKO-related B.subtilis YXKO protein of unknown fu 99.52
PF08543246 Phos_pyr_kin: Phosphomethylpyrimidine kinase; Inte 99.52
COG0351263 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidi 99.46
PRK09517 755 multifunctional thiamine-phosphate pyrophosphoryla 99.45
PRK14713 530 multifunctional hydroxymethylpyrimidine phosphokin 99.43
cd01170242 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (T 99.42
PLN02978308 pyridoxal kinase 99.36
TIGR00196272 yjeF_cterm yjeF C-terminal region, hydroxyethylthi 99.34
COG2240281 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coe 99.28
PTZ00493321 phosphomethylpyrimidine kinase; Provisional 99.13
PRK09355263 hydroxyethylthiazole kinase; Validated 98.98
TIGR00694249 thiM hydroxyethylthiazole kinase. This model repre 98.79
KOG2599|consensus308 98.67
KOG2598|consensus 523 98.59
PRK14039453 ADP-dependent glucokinase; Provisional 97.94
PRK10565508 putative carbohydrate kinase; Provisional 97.87
PF02110246 HK: Hydroxyethylthiazole kinase family; InterPro: 97.82
PRK03979463 ADP-specific phosphofructokinase; Provisional 97.79
TIGR02045446 P_fruct_ADP ADP-specific phosphofructokinase. Phos 97.73
PRK14038453 ADP-dependent glucokinase; Provisional 97.45
COG2145265 ThiM Hydroxyethylthiazole kinase, sugar kinase fam 97.42
PF01256242 Carb_kinase: Carbohydrate kinase; InterPro: IPR000 97.39
PF04587444 ADP_PFK_GK: ADP-specific Phosphofructokinase/Gluco 96.84
KOG3974|consensus306 96.77
COG0063284 Predicted sugar kinase [Carbohydrate transport and 95.63
cd01938445 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and 94.36
COG4809466 Archaeal ADP-dependent phosphofructokinase/glucoki 83.38
>PRK11142 ribokinase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.8e-47  Score=362.75  Aligned_cols=298  Identities=31%  Similarity=0.454  Sum_probs=269.8

Q ss_pred             CCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCC
Q psy8082          14 EADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSI   93 (379)
Q Consensus        14 ~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi   93 (379)
                      |++|+|+|++++|++..++++|.++..+........+||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++ +||
T Consensus         2 m~~i~~iG~~~~D~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~L~~-~gV   80 (306)
T PRK11142          2 MGKLVVLGSINADHVLNLESFPRPGETLTGRHYQVAFGGKGANQAVAAARLGADIAFIACVGDDSIGESMRQQLAK-DGI   80 (306)
T ss_pred             CCcEEEECCceeeEEEEeCCCCCCCCeeEeccceecCCCcHHHHHHHHHhcCCcEEEEEEECCChhHHHHHHHHHH-cCC
Confidence            4679999999999999999999999888888999999999999999999999999999999999999999999999 999


Q ss_pred             cccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhccC
Q psy8082          94 NTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLES  173 (379)
Q Consensus        94 ~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~  173 (379)
                      +++++...++.+|+.+.+.++++|+|++..+.++...+++++++...+.++.++++|+++..+.+....+++.+   ++.
T Consensus        81 ~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a---~~~  157 (306)
T PRK11142         81 DTAPVSVIKGESTGVALIFVNDEGENSIGIHAGANAALTPALVEAHRELIANADALLMQLETPLETVLAAAKIA---KQH  157 (306)
T ss_pred             ChhhEEEcCCCCCCEEEEEECCCCCEEEEEeCCccccCCHHHHHHHHhhhccCCEEEEeCCCCHHHHHHHHHHH---HHc
Confidence            99999878888899999999989999988888888889998887655668999999999877778888999999   999


Q ss_pred             CcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCc
Q psy8082         174 RAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPR  253 (379)
Q Consensus       174 ~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~  253 (379)
                      +.++++|+++.. .....+++++|++++|++|++.+++....+.++..++++.+.+.+++.++||+|++|+++++++  +
T Consensus       158 g~~v~~d~~~~~-~~~~~~~~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~--~  234 (306)
T PRK11142        158 GTKVILNPAPAR-ELPDELLALVDIITPNETEAEKLTGIRVEDDDDAAKAAQVLHQKGIETVLITLGSRGVWLSENG--E  234 (306)
T ss_pred             CCEEEEECCCCc-ccCHHHHhhCCEEcCCHHHHHHHhCCCCCChHHHHHHHHHHHHhCCCeEEEEECCCcEEEEeCC--c
Confidence            999999997532 2446789999999999999999999766565677788888888999999999999999998876  5


Q ss_pred             eEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChhHHH
Q psy8082         254 LKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSNSAF  331 (379)
Q Consensus       254 ~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~~~~  331 (379)
                      .+++|+ ++++++|||||||+|+|||++++++   |+++++|+++         |+++| ++|++.|+.+++|+.+++.
T Consensus       235 ~~~~~~-~~v~vvDt~GAGDaF~Agfi~~l~~---g~~~~~al~~---------a~~~Aa~~~~~~G~~~~~~~~~~~~  300 (306)
T PRK11142        235 GQRVPG-FRVQAVDTIAAGDTFNGALVTALLE---GKPLPEAIRF---------AHAAAAIAVTRKGAQPSIPWREEID  300 (306)
T ss_pred             ceeccC-CCcccccCCCchhHHHHHHHHHHHC---CCCHHHHHHH---------HHHHHHHHcCCCcccccCCCHHHHH
Confidence            788998 8889999999999999999999999   9999999999         99999 9999999988889888763

>PTZ00292 ribokinase; Provisional Back     alignment and domain information
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP Back     alignment and domain information
>TIGR02152 D_ribokin_bact ribokinase Back     alignment and domain information
>PRK09850 pseudouridine kinase; Provisional Back     alignment and domain information
>KOG2855|consensus Back     alignment and domain information
>PLN02341 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>cd01945 ribokinase_group_B Ribokinase-like subgroup B Back     alignment and domain information
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor Back     alignment and domain information
>PLN02813 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases Back     alignment and domain information
>PTZ00247 adenosine kinase; Provisional Back     alignment and domain information
>PLN02323 probable fructokinase Back     alignment and domain information
>PRK09954 putative kinase; Provisional Back     alignment and domain information
>cd01944 YegV_kinase_like YegV-like sugar kinase Back     alignment and domain information
>PLN02967 kinase Back     alignment and domain information
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK15074 inosine/guanosine kinase; Provisional Back     alignment and domain information
>PLN02543 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>cd01942 ribokinase_group_A Ribokinase-like subgroup A Back     alignment and domain information
>PRK09434 aminoimidazole riboside kinase; Provisional Back     alignment and domain information
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP) Back     alignment and domain information
>TIGR03828 pfkB 1-phosphofructokinase Back     alignment and domain information
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I Back     alignment and domain information
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose Back     alignment and domain information
>cd01941 YeiC_kinase_like YeiC-like sugar kinase Back     alignment and domain information
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose Back     alignment and domain information
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate Back     alignment and domain information
>PLN02379 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases Back     alignment and domain information
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases Back     alignment and domain information
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family Back     alignment and domain information
>PRK09513 fruK 1-phosphofructokinase; Provisional Back     alignment and domain information
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like Back     alignment and domain information
>PRK10294 6-phosphofructokinase 2; Provisional Back     alignment and domain information
>cd01943 MAK32 MAK32 kinase Back     alignment and domain information
>TIGR01231 lacC tagatose-6-phosphate kinase Back     alignment and domain information
>PLN02548 adenosine kinase Back     alignment and domain information
>PRK13508 tagatose-6-phosphate kinase; Provisional Back     alignment and domain information
>PLN02630 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional Back     alignment and domain information
>PRK09813 fructoselysine 6-kinase; Provisional Back     alignment and domain information
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd01937 ribokinase_group_D Ribokinase-like subgroup D Back     alignment and domain information
>cd01946 ribokinase_group_C Ribokinase-like subgroup C Back     alignment and domain information
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG2854|consensus Back     alignment and domain information
>KOG2947|consensus Back     alignment and domain information
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group Back     alignment and domain information
>PRK12412 pyridoxal kinase; Reviewed Back     alignment and domain information
>PRK12413 phosphomethylpyrimidine kinase; Provisional Back     alignment and domain information
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase Back     alignment and domain information
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP Back     alignment and domain information
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1 Back     alignment and domain information
>TIGR00687 pyridox_kin pyridoxal kinase Back     alignment and domain information
>PRK07105 pyridoxamine kinase; Validated Back     alignment and domain information
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed Back     alignment and domain information
>PRK05756 pyridoxamine kinase; Validated Back     alignment and domain information
>PRK08573 phosphomethylpyrimidine kinase; Provisional Back     alignment and domain information
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed Back     alignment and domain information
>PRK12616 pyridoxal kinase; Reviewed Back     alignment and domain information
>KOG3009|consensus Back     alignment and domain information
>PTZ00347 phosphomethylpyrimidine kinase; Provisional Back     alignment and domain information
>PTZ00344 pyridoxal kinase; Provisional Back     alignment and domain information
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase Back     alignment and domain information
>cd01171 YXKO-related B Back     alignment and domain information
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2 Back     alignment and domain information
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism] Back     alignment and domain information
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional Back     alignment and domain information
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional Back     alignment and domain information
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz Back     alignment and domain information
>PLN02978 pyridoxal kinase Back     alignment and domain information
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related Back     alignment and domain information
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism] Back     alignment and domain information
>PTZ00493 phosphomethylpyrimidine kinase; Provisional Back     alignment and domain information
>PRK09355 hydroxyethylthiazole kinase; Validated Back     alignment and domain information
>TIGR00694 thiM hydroxyethylthiazole kinase Back     alignment and domain information
>KOG2599|consensus Back     alignment and domain information
>KOG2598|consensus Back     alignment and domain information
>PRK14039 ADP-dependent glucokinase; Provisional Back     alignment and domain information
>PRK10565 putative carbohydrate kinase; Provisional Back     alignment and domain information
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium [] Back     alignment and domain information
>PRK03979 ADP-specific phosphofructokinase; Provisional Back     alignment and domain information
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase Back     alignment and domain information
>PRK14038 ADP-dependent glucokinase; Provisional Back     alignment and domain information
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism] Back     alignment and domain information
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase Back     alignment and domain information
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ] Back     alignment and domain information
>KOG3974|consensus Back     alignment and domain information
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK) Back     alignment and domain information
>COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query379
2fv7_A331 Crystal Structure Of Human Ribokinase Length = 331 2e-49
1rk2_A309 E. Coli Ribokinase Complexed With Ribose And Adp, S 9e-33
3ry7_A304 Crystal Sructure Of Sa239 Length = 304 5e-28
1vm7_A311 Crystal Structure Of Ribokinase (Tm0960) From Therm 2e-19
3kzh_A328 Crystal Structure Of A Putative Sugar Kinase From C 4e-08
1tz6_A339 Crystal Structure Of Aminoimidazole Riboside Kinase 8e-07
1tyy_A339 Crystal Structure Of Aminoimidazole Riboside Kinase 1e-06
2v78_A313 Crystal Structure Of Sulfolobus Solfataricus 2-Keto 4e-06
3hj6_A327 Structure Of Halothermothrix Orenii Fructokinase (F 5e-05
3ewm_A313 Crystal Structure Of An Uncharacterized Sugar Kinas 5e-05
3gbu_A313 Crystal Structure Of An Uncharacterized Sugar Kinas 6e-05
3go6_A310 Crystal Structure Of M. Tuberculosis Ribokinase (Rv 6e-05
2dcn_A311 Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase 4e-04
3i3y_A299 Crystal Structure Of Ribokinase In Complex With D-R 7e-04
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase Length = 331 Back     alignment and structure 
Iteration: 1

 Score =  193 bits (490), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 101/263 (38%), Positives = 156/263 (59%), Gaps = 5/263 (1%)
Query: 21  GSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFG 80
           GSC+ + ++    LPK  ET+ G+ F   F GKGANQCV AA+L A  +++ K+G D FG
Sbjct: 31  GSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFG 90
Query: 81  KSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAK 140
             Y+E L++ N I+T++ +  +D  TG  S +++N+G +   I+ GAN  L+  D+ AA 
Sbjct: 91  NDYIENLKQ-NDISTEFTYQTKDAATGTASIIVNNEGQNIIVIVAGANLLLNTEDLRAAA 149
Query: 141 NLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIIC 200
           N++ +AKV++ Q E    T+L  L+   ++  S  K + NP+PA+  L+P    L+D+ C
Sbjct: 150 NVISRAKVMVCQLEITPATSLEALT---MARRSGVKTLFNPAPAIADLDPQFYTLSDVFC 206
Query: 201 INEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVD 260
            NE EAEI+T + + +  D  +    LL   C  VIITLG  G V  ++  P  K I  +
Sbjct: 207 CNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTEPEPKHIPTE 266
Query: 261 HVEYPIESEGVGDCFVGALAYYF 283
            V+  +++ G GD FVGALA+Y 
Sbjct: 267 KVK-AVDTTGAGDSFVGALAFYL 288
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved In Space Group P212121 Length = 309 Back     alignment and structure
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239 Length = 304 Back     alignment and structure
>pdb|1VM7|A Chain A, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga Maritima At 2.15 A Resolution Length = 311 Back     alignment and structure
>pdb|3KZH|A Chain A, Crystal Structure Of A Putative Sugar Kinase From Clostridium Perfringens Length = 328 Back     alignment and structure
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From Salmonella Enterica Complexed With Aminoimidazole Riboside And Atp Analog Length = 339 Back     alignment and structure
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From Salmonella Enterica Length = 339 Back     alignment and structure
>pdb|2V78|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3- Deoxygluconate Kinase Length = 313 Back     alignment and structure
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk) Length = 327 Back     alignment and structure
>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase Ph1459 From Pyrococcus Horikoshii Length = 313 Back     alignment and structure
>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase Ph1459 From Pyrococcus Horikoshii In Complex With Atp Length = 313 Back     alignment and structure
>pdb|3GO6|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436) In Complex With Ribose And Amp-Pnp Length = 310 Back     alignment and structure
>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed With 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) Length = 311 Back     alignment and structure
>pdb|3I3Y|A Chain A, Crystal Structure Of Ribokinase In Complex With D-Ribose From Klebsiella Pneumoniae Length = 299 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query379
2fv7_A331 Ribokinase; structural genomics, structural genomi 5e-85
3ry7_A304 Ribokinase; transferase; 2.15A {Staphylococcus aur 7e-80
1rkd_A309 Ribokinase; carbohydrate kinase, ribose, nucleotid 5e-79
3kzh_A328 Probable sugar kinase; NYSGXRC, PSI-II, protein st 4e-76
2rbc_A343 Sugar kinase, AGR_C_4560P; ribokinase family, ATP- 1e-70
1vm7_A311 Ribokinase; TM0960, structural genomics, JCSG, pro 3e-70
2nwh_A317 AGR_C_3442P, carbohydrate kinase; structural genom 3e-65
3ikh_A299 Carbohydrate kinase; transferase,kinase,SAD,ribose 5e-64
2c4e_A302 Sugar kinase MJ0406; transferase, nucleoside kinas 2e-59
3go6_A310 Ribokinase RBSK; phosphofructokinase, carbohydrate 1e-58
2pkf_A334 Adenosine kinase; transferase, S genomics, TB stru 5e-58
3h49_A325 Ribokinase; transferase,PFKB family,sugar kinase Y 3e-56
3b1n_A326 Ribokinase, putative; rossmann fold, ATP binding, 2e-54
2hlz_A312 Ketohexokinase; non-protein kinase, creatine kinas 3e-53
3bf5_A306 Ribokinase related protein; 10640157, putative rib 8e-51
3kd6_A313 Carbohydrate kinase, PFKB family; nucleoside kinas 2e-37
1tyy_A339 Putative sugar kinase; ribokinase fold, alpha/beta 4e-36
3iq0_A330 Putative ribokinase II; transferase,kinase,SAD,rib 7e-33
1vk4_A298 PFKB carbohydrate kinase TM0415; structural genomi 3e-32
2dcn_A311 Hypothetical fructokinase; 2-keto-3-deoxygluconate 3e-31
3hj6_A327 Fructokinase, FRK; fructose, transferase, carbohyd 1e-29
4du5_A336 PFKB; structural genomics, PSI-biology, NEW YORK s 2e-29
2v78_A313 Fructokinase; transferase, PFKB family carbohydrat 1e-28
2qhp_A296 Fructokinase; NP_810670.1, PFKB family carbohydrat 2e-27
3pl2_A319 Sugar kinase, ribokinase family; PFKB PFAM motif, 4e-27
4e69_A328 2-dehydro-3-deoxygluconokinase; putative sugar kin 2e-26
2qcv_A332 Putative 5-dehydro-2-deoxygluconokinase; structura 3e-26
3lhx_A319 Ketodeoxygluconokinase; structural genomics, PSI-2 1e-25
3ljs_A338 Fructokinase; fructokianse, PSI2, NYSGXRC, structu 1e-24
1v1a_A309 2-keto-3-deoxygluconate kinase; ATP, structural ge 2e-23
3ewm_A313 Uncharacterized sugar kinase PH1459; carbohydrate 3e-21
2afb_A351 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro- 1e-17
3ktn_A346 Carbohydrate kinase, PFKB family; PFKB family,ribo 1e-17
3loo_A365 Anopheles gambiae adenosine kinase; AP4A, P4-DI(ad 1e-16
3otx_A347 Adenosine kinase, putative; AP5A, transferase-tran 3e-16
1bx4_A345 Protein (adenosine kinase); human adenosine kinase 4e-16
4e3a_A352 Sugar kinase protein; structural genomics, protein 5e-15
2abs_A383 Adenosine kinase, AK; ribokinase fold, alpha/beta, 4e-12
3pzs_A289 PM kinase, pyridoxamine kinase; structural genomic 2e-10
3zs7_A300 Pyridoxal kinase; transferase, sleeping sickness; 8e-10
2ddm_A283 Pyridoxine kinase; pyridoxal kinase, ribokinase, p 2e-09
2yxt_A312 Pyridoxal kinase; beta sheet with alpha helix, met 7e-09
3mbh_A291 Putative phosphomethylpyrimidine kinase; structura 9e-09
2abq_A306 Fructose 1-phosphate kinase; dimer, structural gen 6e-08
2jg5_A306 Fructose 1-phosphate kinase; 1-phosphofructokinase 8e-08
3cqd_A309 6-phosphofructokinase isozyme 2; phosphofructokina 4e-07
2jg1_A330 Tagatose-6-phosphate kinase; phosphoryl transfer, 2e-06
2f02_A323 Tagatose-6-phosphate kinase; LACC, structural geno 4e-06
3ie7_A320 LIN2199 protein; phosphofructokinases, transferase 1e-05
2ajr_A331 Sugar kinase, PFKB family; TM0828, possible 1-phos 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
3h74_A282 Pyridoxal kinase; PSI-II, structural genomics, pro 3e-04
1ub0_A258 THID, phosphomethylpyrimidine kinase; thiamin bios 3e-04
>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1 Length = 331 Back     alignment and structure
 Score =  260 bits (667), Expect = 5e-85
 Identities = 106/281 (37%), Positives = 163/281 (58%), Gaps = 6/281 (2%)

Query: 15  ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKL 74
           A +VVVGSC+ + ++    LPK  ET+ G+ F   F GKGANQCV AA+L A  +++ K+
Sbjct: 25  AAVVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKV 84

Query: 75  GNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSAS 134
           G D FG  Y+E L++ + I+T++ +  +D  TG  S +++N+G +   I+ GAN  L+  
Sbjct: 85  GKDSFGNDYIENLKQND-ISTEFTYQTKDAATGTASIIVNNEGQNIIVIVAGANLLLNTE 143

Query: 135 DIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMI 194
           D+ AA N++ +AKV++ Q E    T+L  L+       S  K + NP+PA+  L+P    
Sbjct: 144 DLRAAANVISRAKVMVCQLEITPATSLEALTMAR---RSGVKTLFNPAPAIADLDPQFYT 200

Query: 195 LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRL 254
           L+D+ C NE EAEI+T + + +  D  +    LL   C  VIITLG  G V  ++  P  
Sbjct: 201 LSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTEPEP 260

Query: 255 KTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSC 295
           K I  + V+  +++ G GD FVGALA+Y  A     +L+  
Sbjct: 261 KHIPTEKVK-AVDTTGAGDSFVGALAFYL-AYYPNLSLEDM 299
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus} Length = 304 Back     alignment and structure
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A* Length = 309 Back     alignment and structure
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens} Length = 328 Back     alignment and structure
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str} Length = 343 Back     alignment and structure
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1 Length = 311 Back     alignment and structure
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str} Length = 317 Back     alignment and structure
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A* Length = 299 Back     alignment and structure
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A Length = 302 Back     alignment and structure
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A* Length = 310 Back     alignment and structure
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A* Length = 334 Back     alignment and structure
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A* Length = 325 Back     alignment and structure
>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A* Length = 326 Back     alignment and structure
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A Length = 312 Back     alignment and structure
>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728} Length = 306 Back     alignment and structure
>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum} Length = 313 Back     alignment and structure
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A* Length = 339 Back     alignment and structure
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} PDB: 3k9e_A Length = 330 Back     alignment and structure
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1 Length = 298 Back     alignment and structure
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A* Length = 311 Back     alignment and structure
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii} Length = 327 Back     alignment and structure
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP} Length = 336 Back     alignment and structure
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A* Length = 313 Back     alignment and structure
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Length = 296 Back     alignment and structure
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} Length = 319 Back     alignment and structure
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A* Length = 328 Back     alignment and structure
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125} Length = 332 Back     alignment and structure
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri} Length = 319 Back     alignment and structure
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} PDB: 3lki_A* Length = 338 Back     alignment and structure
>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A Length = 309 Back     alignment and structure
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A* Length = 313 Back     alignment and structure
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1 Length = 351 Back     alignment and structure
>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis} Length = 346 Back     alignment and structure
>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae} Length = 365 Back     alignment and structure
>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A* Length = 347 Back     alignment and structure
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A* Length = 345 Back     alignment and structure
>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A* Length = 352 Back     alignment and structure
>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A* Length = 383 Back     alignment and structure
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} PDB: 1td2_A* 1vi9_A* Length = 289 Back     alignment and structure
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei} Length = 300 Back     alignment and structure
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal 5'-phosphate, vitamin B6, phosphorylation, transferase; 2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A* Length = 283 Back     alignment and structure
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A* 3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A* Length = 312 Back     alignment and structure
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PXL; 2.00A {Bacteroides thetaiotaomicron} PDB: 3mbj_A* Length = 291 Back     alignment and structure
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1 Length = 306 Back     alignment and structure
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus} Length = 306 Back     alignment and structure
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A* Length = 309 Back     alignment and structure
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A* Length = 330 Back     alignment and structure
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A* Length = 323 Back     alignment and structure
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A Length = 320 Back     alignment and structure
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), struct genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1 Length = 331 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A* Length = 282 Back     alignment and structure
>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylati structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2 Length = 258 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query379
3ry7_A304 Ribokinase; transferase; 2.15A {Staphylococcus aur 100.0
1rkd_A309 Ribokinase; carbohydrate kinase, ribose, nucleotid 100.0
2fv7_A331 Ribokinase; structural genomics, structural genomi 100.0
3kzh_A328 Probable sugar kinase; NYSGXRC, PSI-II, protein st 100.0
2rbc_A343 Sugar kinase, AGR_C_4560P; ribokinase family, ATP- 100.0
3ikh_A299 Carbohydrate kinase; transferase,kinase,SAD,ribose 100.0
1vm7_A311 Ribokinase; TM0960, structural genomics, JCSG, pro 100.0
2nwh_A317 AGR_C_3442P, carbohydrate kinase; structural genom 100.0
2c4e_A302 Sugar kinase MJ0406; transferase, nucleoside kinas 100.0
3iq0_A330 Putative ribokinase II; transferase,kinase,SAD,rib 100.0
3vas_A370 Putative adenosine kinase; ribokinase, enzyme, tra 100.0
3ljs_A338 Fructokinase; fructokianse, PSI2, NYSGXRC, structu 100.0
3pl2_A319 Sugar kinase, ribokinase family; PFKB PFAM motif, 100.0
3go6_A310 Ribokinase RBSK; phosphofructokinase, carbohydrate 100.0
3hj6_A327 Fructokinase, FRK; fructose, transferase, carbohyd 100.0
4du5_A336 PFKB; structural genomics, PSI-biology, NEW YORK s 100.0
3ktn_A346 Carbohydrate kinase, PFKB family; PFKB family,ribo 100.0
4e3a_A352 Sugar kinase protein; structural genomics, protein 100.0
3h49_A325 Ribokinase; transferase,PFKB family,sugar kinase Y 100.0
3otx_A347 Adenosine kinase, putative; AP5A, transferase-tran 100.0
2v78_A313 Fructokinase; transferase, PFKB family carbohydrat 100.0
2qcv_A332 Putative 5-dehydro-2-deoxygluconokinase; structura 100.0
2hlz_A312 Ketohexokinase; non-protein kinase, creatine kinas 100.0
3umo_A309 6-phosphofructokinase isozyme 2; glycolysis, trans 100.0
1v1a_A309 2-keto-3-deoxygluconate kinase; ATP, structural ge 100.0
3loo_A365 Anopheles gambiae adenosine kinase; AP4A, P4-DI(ad 100.0
2pkf_A334 Adenosine kinase; transferase, S genomics, TB stru 100.0
2dcn_A311 Hypothetical fructokinase; 2-keto-3-deoxygluconate 100.0
4e84_A352 D-beta-D-heptose 7-phosphate kinase; LPS-heptose b 100.0
3lhx_A319 Ketodeoxygluconokinase; structural genomics, PSI-2 100.0
2jg1_A330 Tagatose-6-phosphate kinase; phosphoryl transfer, 100.0
3cqd_A309 6-phosphofructokinase isozyme 2; phosphofructokina 100.0
4e69_A328 2-dehydro-3-deoxygluconokinase; putative sugar kin 100.0
1tyy_A339 Putative sugar kinase; ribokinase fold, alpha/beta 100.0
2ajr_A331 Sugar kinase, PFKB family; TM0828, possible 1-phos 100.0
2f02_A323 Tagatose-6-phosphate kinase; LACC, structural geno 100.0
1bx4_A345 Protein (adenosine kinase); human adenosine kinase 100.0
3b1n_A326 Ribokinase, putative; rossmann fold, ATP binding, 100.0
3uq6_A372 Adenosine kinase, putative; ribokinase, transferas 100.0
2abq_A306 Fructose 1-phosphate kinase; dimer, structural gen 100.0
3ie7_A320 LIN2199 protein; phosphofructokinases, transferase 100.0
3ewm_A313 Uncharacterized sugar kinase PH1459; carbohydrate 100.0
2jg5_A306 Fructose 1-phosphate kinase; 1-phosphofructokinase 100.0
3bf5_A306 Ribokinase related protein; 10640157, putative rib 100.0
2abs_A383 Adenosine kinase, AK; ribokinase fold, alpha/beta, 100.0
2qhp_A296 Fructokinase; NP_810670.1, PFKB family carbohydrat 100.0
2afb_A351 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro- 100.0
4gm6_A351 PFKB family carbohydrate kinase; enzyme function i 100.0
3kd6_A313 Carbohydrate kinase, PFKB family; nucleoside kinas 100.0
1vk4_A298 PFKB carbohydrate kinase TM0415; structural genomi 100.0
2yxt_A312 Pyridoxal kinase; beta sheet with alpha helix, met 99.9
2ddm_A283 Pyridoxine kinase; pyridoxal kinase, ribokinase, p 99.89
1jxh_A288 Phosphomethylpyrimidine kinase; THID, ribokinase f 99.88
1ub0_A258 THID, phosphomethylpyrimidine kinase; thiamin bios 99.87
2i5b_A271 Phosphomethylpyrimidine kinase; ADP complex, PDXK, 99.85
3pzs_A289 PM kinase, pyridoxamine kinase; structural genomic 99.76
3mbh_A291 Putative phosphomethylpyrimidine kinase; structura 99.74
3h74_A282 Pyridoxal kinase; PSI-II, structural genomics, pro 99.74
3zs7_A300 Pyridoxal kinase; transferase, sleeping sickness; 99.71
1ekq_A272 Hydroxyethylthiazole kinase; alpha-beta, transfera 99.58
3rm5_A 550 Hydroxymethylpyrimidine/phosphomethylpyrimidine K 99.48
1v8a_A265 Hydroxyethylthiazole kinase; alpha-beta, ATP bindi 99.18
2r3b_A310 YJEF-related protein; putative kinase in the ribok 98.91
3dzv_A273 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_ 98.86
3rpz_A279 ADP/ATP-dependent NAD(P)H-hydrate dehydratase; str 98.85
3bgk_A311 SMU.573, putative uncharacterized protein; alpha/b 98.84
3rss_A502 Putative uncharacterized protein; unknown function 98.81
3drw_A474 ADP-specific phosphofructokinase; AMP, GLYC kinase 98.4
3nl6_A540 Thiamine biosynthetic bifunctional enzyme; thiamin 98.27
3hpd_A265 Hydroxyethylthiazole kinase; alpha-beta, ATP bindi 98.11
1ua4_A455 Glucokinase, ADP-dependent glucokinase; transferas 97.85
1gc5_A467 ADP-dependent glucokinase; ALFA/beta sandwichs, in 97.72
1l2l_A457 ADP-dependent glucokinase; ADP glucokinase APO, tr 97.72
3k5w_A475 Carbohydrate kinase; 11206B,helicobacter pylori,PS 97.56
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus} Back     alignment and structure
Probab=100.00  E-value=4.7e-50  Score=381.54  Aligned_cols=298  Identities=27%  Similarity=0.396  Sum_probs=277.0

Q ss_pred             CCcEEEECccccceecccCCCCCCCCce-ecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcC
Q psy8082          14 EADIVVVGSCLVEFITYVQTLPKPEETV-KGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNS   92 (379)
Q Consensus        14 ~~~i~viG~~~iD~i~~~~~~p~~~~~~-~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~g   92 (379)
                      |++|+|+|++++|++..++++|.+++.+ ........+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++ +|
T Consensus         2 m~~v~viG~~~~D~~~~~~~~p~~g~~~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~~~~vG~D~~g~~i~~~l~~-~g   80 (304)
T 3ry7_A            2 TNKVVILGSTNVDQFLTVERYAQPGETLHVEEAQKAFGGGKGANQAIATARMQADTTFITKIGTDGVADFILEDFKV-AH   80 (304)
T ss_dssp             CCEEEEECCCEEEEEEECSSCCCTTCCCCCSSCCEEEEECHHHHHHHHHHHTTCEEEEECEEESSCTTHHHHHHHHH-TT
T ss_pred             CCcEEEEccceeEEEEeccCCCCCCCceecccceeecCCCHHHHHHHHHHHCCCCeEEEEEeCCChHHHHHHHHHHH-cC
Confidence            5789999999999999999999988888 888899999999999999999999999999999999999999999999 99


Q ss_pred             CcccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhcc
Q psy8082          93 INTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLE  172 (379)
Q Consensus        93 i~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~  172 (379)
                      |+++++...++.+|+.+++.++++|+++++.+.+++..+++++++...+.+++++++|+++..+.+.+.++++.+   ++
T Consensus        81 v~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a---~~  157 (304)
T 3ry7_A           81 IDTSYIIKTAEAKTGQAFITVNAEGQNTIYVYGGANMTMTPEDVINAKDAIINADFVVAQLEVPIPAIISAFEIA---KA  157 (304)
T ss_dssp             CBCTTCEEESSSCCEEEEEEECSSCCEEEEEECGGGGGCCHHHHHTTHHHHHTCSEEEEETTSCHHHHHHHHHHH---HH
T ss_pred             CcchhEEEcCCCCCcEEEEEECCCCCEEEEEecCchhcCCHHHHHHHHHHhccCCEEEEcCCCCHHHHHHHHHHH---HH
Confidence            999999887888999999999999999988888888899999988655568899999999998999999999999   99


Q ss_pred             CCcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCC
Q psy8082         173 SRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNP  252 (379)
Q Consensus       173 ~~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~  252 (379)
                      .+.++++||.+. .+....+++++|++++|++|++.|++....+.+++.++++.|.+++++.++||.|++|+++++++  
T Consensus       158 ~~~~v~~D~~~~-~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~--  234 (304)
T 3ry7_A          158 HGVTTVLNPAPA-KALPNELLSLIDIIVPNETEAELLSGIKVTNEQSMKDNANYFLSIGIKTVLITLGKQGTYFATKN--  234 (304)
T ss_dssp             TTCEEEEECCSC-CCCCHHHHTTCSEECCBHHHHHHHHSCCCCSHHHHHHHHHHHHHTTCCEEEEECGGGCEEEECSS--
T ss_pred             cCCEEEEeCCcc-ccccHHHHHhCCEEecCHHHHHHHhCCCCCChhHHHHHHHHHHHcCCCEEEEEeCCCceEEEECC--
Confidence            999999999864 24667899999999999999999999877777788999999999999999999999999999876  


Q ss_pred             ceEEEccCCCcCcccCCChhHHHHHHHHHHHHhcCCC-CCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChhHH
Q psy8082         253 RLKTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKG-GNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSNSA  330 (379)
Q Consensus       253 ~~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~~~~~g-~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~~~  330 (379)
                      +.+++|+ ++++++|||||||+|+|||+++|++   | +++++|+++         |+++| ++|++.|+.+++|+.+++
T Consensus       235 ~~~~~~~-~~v~~vdttGAGDaf~a~~~~~l~~---g~~~~~~a~~~---------A~~~aa~~~~~~G~~~~~p~~~ev  301 (304)
T 3ry7_A          235 QSQHIEA-YKVNAIDTTAAGDTFIGAFVSRLNK---SQDNLADAIDF---------GNKASSLTVQKHGAQASIPLLEEV  301 (304)
T ss_dssp             CEEEECC-SSCCSSCCSSHHHHHHHHHHHHCCT---TCTTHHHHHHH---------HHHHHHTTSCCCCTGGGCCCHHHH
T ss_pred             eeEEecC-CCcccCCCCCchHHHHHHHHHHHHc---CCCCHHHHHHH---------HHHHHHHHhCCCCccccCCCHHHH
Confidence            6899999 8899999999999999999999999   9 999999999         99999 999999999999999886


Q ss_pred             H
Q psy8082         331 F  331 (379)
Q Consensus       331 ~  331 (379)
                      .
T Consensus       302 ~  302 (304)
T 3ry7_A          302 N  302 (304)
T ss_dssp             H
T ss_pred             h
Confidence            4
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A* Back     alignment and structure
>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1 Back     alignment and structure
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens} Back     alignment and structure
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str} Back     alignment and structure
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A* Back     alignment and structure
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1 Back     alignment and structure
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str} Back     alignment and structure
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A Back     alignment and structure
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} SCOP: c.72.1.0 PDB: 3k9e_A Back     alignment and structure
>3vas_A Putative adenosine kinase; ribokinase, enzyme, transferase; HET: ADN; 2.26A {Schistosoma mansoni} PDB: 4dc3_A* 3vaq_A* 3uq6_A* 3uq9_A* Back     alignment and structure
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} SCOP: c.72.1.0 PDB: 3lki_A* Back     alignment and structure
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} SCOP: c.72.1.0 Back     alignment and structure
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A* Back     alignment and structure
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii} Back     alignment and structure
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP} Back     alignment and structure
>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis} Back     alignment and structure
>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A* Back     alignment and structure
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A* Back     alignment and structure
>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A* Back     alignment and structure
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A* Back     alignment and structure
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125} Back     alignment and structure
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A Back     alignment and structure
>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A* Back     alignment and structure
>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A Back     alignment and structure
>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae} Back     alignment and structure
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A* Back     alignment and structure
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A* Back     alignment and structure
>4e84_A D-beta-D-heptose 7-phosphate kinase; LPS-heptose biosynthesis, beta-clAsp dimerization region, PF carbohydrate kinase, phosphorylation; HET: MSE ANP M7B GMZ; 2.60A {Burkholderia cenocepacia} PDB: 4e8w_A* 4e8y_A* 4e8z_A* Back     alignment and structure
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri} Back     alignment and structure
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A* Back     alignment and structure
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A* Back     alignment and structure
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A* Back     alignment and structure
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A* Back     alignment and structure
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), struct genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1 Back     alignment and structure
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A* Back     alignment and structure
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A* Back     alignment and structure
>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A* Back     alignment and structure
>3uq6_A Adenosine kinase, putative; ribokinase, transferase; HET: ADN AMP; 2.30A {Schistosoma mansoni} PDB: 3uq9_A* Back     alignment and structure
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1 Back     alignment and structure
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A Back     alignment and structure
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A* Back     alignment and structure
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus} Back     alignment and structure
>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728} Back     alignment and structure
>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A* Back     alignment and structure
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1 Back     alignment and structure
>4gm6_A PFKB family carbohydrate kinase; enzyme function initiative, transferase; 2.00A {Listeria grayi dsm 20601} Back     alignment and structure
>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum} Back     alignment and structure
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1 Back     alignment and structure
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A* 3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A* Back     alignment and structure
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal 5'-phosphate, vitamin B6, phosphorylation, transferase; 2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A* Back     alignment and structure
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A* Back     alignment and structure
>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylati structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2 Back     alignment and structure
>2i5b_A Phosphomethylpyrimidine kinase; ADP complex, PDXK, THID, ribokinase superfamily, transferase; HET: ADP; 2.80A {Bacillus subtilis} Back     alignment and structure
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A* Back     alignment and structure
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PXL; 2.00A {Bacteroides thetaiotaomicron} PDB: 3mbj_A* Back     alignment and structure
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A* Back     alignment and structure
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei} Back     alignment and structure
>1ekq_A Hydroxyethylthiazole kinase; alpha-beta, transferase; 1.50A {Bacillus subtilis} SCOP: c.72.1.2 PDB: 1ekk_A 1c3q_A 1esj_A 1esq_A* Back     alignment and structure
>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae} Back     alignment and structure
>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} PDB: 3hpd_A Back     alignment and structure
>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like superfamily, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Enterococcus faecalis} PDB: 2r3e_A Back     alignment and structure
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis} Back     alignment and structure
>3rpz_A ADP/ATP-dependent NAD(P)H-hydrate dehydratase; structural genomics, PSI-biology; HET: AMP NPW; 1.51A {Bacillus subtilis} PDB: 3rph_A* 3rq2_A* 3rq5_A* 3rq6_A* 3rq8_A* 3rqh_A* 3rqq_A* 3rqx_A* 1kyh_A Back     alignment and structure
>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer sandwich, unknown function; 2.50A {Streptococcus mutans} Back     alignment and structure
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A* Back     alignment and structure
>3drw_A ADP-specific phosphofructokinase; AMP, GLYC kinase, magnesium, metal-binding, transferase, structural G PSI-2, protein structure initiative; HET: AMP; 1.90A {Pyrococcus horikoshii} PDB: 1u2x_A Back     alignment and structure
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* Back     alignment and structure
>3hpd_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, ATP-binding, M metal-binding, nucleotide-binding, thiamine biosynthesis; 1.85A {Pyrococcus horikoshii} Back     alignment and structure
>1ua4_A Glucokinase, ADP-dependent glucokinase; transferase; HET: GLC BGC AMP; 1.90A {Pyrococcus furiosus} SCOP: c.72.1.3 Back     alignment and structure
>1gc5_A ADP-dependent glucokinase; ALFA/beta sandwichs, induced-fitting, transferase; HET: ADP; 2.30A {Thermococcus litoralis} SCOP: c.72.1.3 Back     alignment and structure
>1l2l_A ADP-dependent glucokinase; ADP glucokinase APO, transferase; 2.00A {Pyrococcus horikoshii} SCOP: c.72.1.3 Back     alignment and structure
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, , structural genomics, protein structure initiative; 2.60A {Helicobacter pylori} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 379
d2fv7a1308 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapien 9e-31
d1rkda_306 c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 3e-27
d1vm7a_299 c.72.1.1 (A:) Ribokinase {Thermotoga maritima [Tax 9e-27
d2afba1333 c.72.1.1 (A:-2-330) 2-keto-3-deoxygluconate kinase 1e-21
d2ajra1319 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {T 2e-21
d1v19a_302 c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Ther 5e-21
d1vk4a_288 c.72.1.1 (A:) Hypothetical protein TM0415 {Thermot 5e-19
d2dcna1308 c.72.1.1 (A:2-309) Hypothetical fructokinase ST247 3e-18
d1tyya_304 c.72.1.1 (A:) Aminoimidazole riboside kinase {Salm 5e-18
d2abqa1306 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase Fru 5e-18
d2f02a1313 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase Lac 1e-16
d1bx4a_342 c.72.1.1 (A:) Adenosine kinase {Human (Homo sapien 3e-12
d2absa1350 c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma g 1e-10
d1vi9a_288 c.72.1.5 (A:) Pyridoxamine kinase {Escherichia col 1e-06
d1lhpa_309 c.72.1.5 (A:) Pyridoxal kinase {Sheep (Ovis aries) 1e-06
d1ub0a_258 c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyri 0.001
>d2fv7a1 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 308 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Ribokinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (292), Expect = 9e-31
 Identities = 104/281 (37%), Positives = 156/281 (55%), Gaps = 6/281 (2%)

Query: 15  ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKL 74
           A +VVVGSC+ + ++    LPK  ET+ G+ F   F GKGANQCV AA+L A  +++ K+
Sbjct: 2   AAVVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKV 61

Query: 75  GNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSAS 134
           G D FG  Y+E L++ +          +D  TG  S +++N+G +   I+ GAN  L+  
Sbjct: 62  GKDSFGNDYIENLKQNDISTEFTYQ-TKDAATGTASIIVNNEGQNIIVIVAGANLLLNTE 120

Query: 135 DIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMI 194
           D+ AA N++ +AKV++ Q E    T+L  L+       S  K + NP+PA+  L+P    
Sbjct: 121 DLRAAANVISRAKVMVCQLEITPATSLEALTMAR---RSGVKTLFNPAPAIADLDPQFYT 177

Query: 195 LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRL 254
           L+D+ C NE EAEI+T + + +  D  +    LL   C  VIITLG  G V  ++  P  
Sbjct: 178 LSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTEPEP 237

Query: 255 KTITVDHVEYPIESEGVGDCFVGALAYYFKAGQKGGNLDSC 295
           K I  + V   +++ G GD FVGALA+Y  A     +L+  
Sbjct: 238 KHIPTEKV-KAVDTTGAGDSFVGALAFYL-AYYPNLSLEDM 276
>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]} Length = 306 Back     information, alignment and structure
>d1vm7a_ c.72.1.1 (A:) Ribokinase {Thermotoga maritima [TaxId: 2336]} Length = 299 Back     information, alignment and structure
>d2afba1 c.72.1.1 (A:-2-330) 2-keto-3-deoxygluconate kinase {Thermotoga maritima, TM0067 [TaxId: 2336]} Length = 333 Back     information, alignment and structure
>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga maritima [TaxId: 2336]} Length = 319 Back     information, alignment and structure
>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus thermophilus [TaxId: 274]} Length = 302 Back     information, alignment and structure
>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga maritima [TaxId: 2336]} Length = 288 Back     information, alignment and structure
>d2dcna1 c.72.1.1 (A:2-309) Hypothetical fructokinase ST2478 {Sulfolobus tokodaii [TaxId: 111955]} Length = 308 Back     information, alignment and structure
>d1tyya_ c.72.1.1 (A:) Aminoimidazole riboside kinase {Salmonella typhimurium [TaxId: 90371]} Length = 304 Back     information, alignment and structure
>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB {Bacillus halodurans [TaxId: 86665]} Length = 306 Back     information, alignment and structure
>d2f02a1 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase LacC {Enterococcus faecalis [TaxId: 1351]} Length = 313 Back     information, alignment and structure
>d1bx4a_ c.72.1.1 (A:) Adenosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 342 Back     information, alignment and structure
>d2absa1 c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma gondii [TaxId: 5811]} Length = 350 Back     information, alignment and structure
>d1vi9a_ c.72.1.5 (A:) Pyridoxamine kinase {Escherichia coli [TaxId: 562]} Length = 288 Back     information, alignment and structure
>d1lhpa_ c.72.1.5 (A:) Pyridoxal kinase {Sheep (Ovis aries) [TaxId: 9940]} Length = 309 Back     information, alignment and structure
>d1ub0a_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) {Thermus thermophilus [TaxId: 274]} Length = 258 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query379
d2fv7a1308 Ribokinase {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1rkda_306 Ribokinase {Escherichia coli [TaxId: 562]} 100.0
d1vm7a_299 Ribokinase {Thermotoga maritima [TaxId: 2336]} 100.0
d1v19a_302 2-keto-3-deoxygluconate kinase {Thermus thermophil 100.0
d2abqa1306 Fructose 1-phosphate kinase FruB {Bacillus halodur 100.0
d2f02a1313 Tagatose-6-phosphate kinase LacC {Enterococcus fae 100.0
d2afba1333 2-keto-3-deoxygluconate kinase {Thermotoga maritim 100.0
d2ajra1319 Putative sugar kinase TM0828 {Thermotoga maritima 100.0
d2dcna1308 Hypothetical fructokinase ST2478 {Sulfolobus tokod 100.0
d1bx4a_342 Adenosine kinase {Human (Homo sapiens) [TaxId: 960 100.0
d1tyya_304 Aminoimidazole riboside kinase {Salmonella typhimu 100.0
d2absa1350 Adenosine kinase {Toxoplasma gondii [TaxId: 5811]} 100.0
d1vk4a_288 Hypothetical protein TM0415 {Thermotoga maritima [ 100.0
d1vi9a_288 Pyridoxamine kinase {Escherichia coli [TaxId: 562] 99.66
d1ub0a_258 4-amino-5-hydroxymethyl-2-methylpyrimidine phospha 99.53
d1jxha_266 4-amino-5-hydroxymethyl-2-methylpyrimidine phospha 99.4
d1lhpa_309 Pyridoxal kinase {Sheep (Ovis aries) [TaxId: 9940] 99.37
d1ekqa_269 Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Ba 98.58
d1kyha_275 Hypothetical protein YxkO {Bacillus subtilis [TaxI 98.37
d1v8aa_264 Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Ar 98.2
d2ax3a1278 Hypothetical protein TM0922, C-terminal domain {Th 97.88
d1u2xa_450 ADP-specific phosphofructokinase {Pyrococcus horik 97.78
d1gc5a_467 ADP-dependent glucokinase {Archaeon Thermococcus l 97.38
d1ua4a_454 ADP-dependent glucokinase {Archaeon Pyrococcus fur 97.2
d1l2la_451 ADP-dependent glucokinase {Archaeon Thermococcus l 97.0
>d2fv7a1 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Ribokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-43  Score=330.40  Aligned_cols=300  Identities=37%  Similarity=0.616  Sum_probs=268.0

Q ss_pred             CCcEEEECccccceecccCCCCCCCCceecCcEEEecCChHHHHHHHHHHCCCCeeEEEEecCChhHHHHHHHHhhhcCC
Q psy8082          14 EADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSI   93 (379)
Q Consensus        14 ~~~i~viG~~~iD~i~~~~~~p~~~~~~~~~~~~~~~GG~a~nvA~~l~~LG~~v~lvs~vG~D~~g~~i~~~l~~~~gi   93 (379)
                      |.+|+|||++++|++.+++++|.+++++...++..++||+++|+|++|++||.+|.|+|.+|+|.+|+.+.+.|++ .||
T Consensus         1 ~~~i~viG~~~iD~~~~~~~~p~~g~~~~~~~~~~~~GG~~~Nva~~l~~lg~~v~~is~vG~D~~g~~i~~~L~~-~gi   79 (308)
T d2fv7a1           1 VAAVVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFGNDYIENLKQ-NDI   79 (308)
T ss_dssp             CCSEEEECCCEEEEEEECSSCCCTTCCCCCSEEEEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHHHHHHHHT-TTE
T ss_pred             CCEEEEEChhheEeEeecCCCCCCCceEeeceEEEecCCHHHHHHHHHHHCCCCEEEEEEeccccccccccchhcc-ccc
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             cccceeeeCCcCceeEEEEEcCCCceeEEecCCcCCCCCHHHHHHHHhhccCccEEEEeCCCCHHHHHHHHHHhhhhccC
Q psy8082          94 NTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLES  173 (379)
Q Consensus        94 ~~~~i~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~  173 (379)
                      ++.++...+..+|+.+.+..+.++++.+.........+....+...........+..+.....++......+.+   ++.
T Consensus        80 ~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  156 (308)
T d2fv7a1          80 STEFTYQTKDAATGTASIIVNNEGQNIIVIVAGANLLLNTEDLRAAANVISRAKVMVCQLEITPATSLEALTMA---RRS  156 (308)
T ss_dssp             ECTTEEEESSSCCEEEEEEECTTSCEEEEEECGGGGGCCHHHHHHTHHHHHHCSEEEECSSSCHHHHHHHHHHH---HHT
T ss_pred             ccccccccccccccceEEEEecCCceEEEeeecchhhhchhhhhhhhhhcccceEEeeccccchHHHHHHHHHh---hhc
Confidence            99999988888888888889999999988777777777777776655455666777777777888888888888   899


Q ss_pred             CcEEEEecCCCCCCCchhhcccCeEEEeCHHHHHHhhCCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCc
Q psy8082         174 RAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPR  253 (379)
Q Consensus       174 ~~~v~~D~~~~~~~~~~~ll~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivT~G~~G~~~~~~~~~~  253 (379)
                      +.++++|+.+.............+++..+.+|..........+..+..+....+.+++++.+++|+|++|++++++++..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vivT~G~~G~~~~~~~~~~  236 (308)
T d2fv7a1         157 GVKTLFNPAPAIADLDPQFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTEPE  236 (308)
T ss_dssp             TCEEEECCCSCCTTCCTHHHHTCSEEEEEHHHHHHHHSSCCCSHHHHHHHHHHHHTTTCSEEEEECGGGCEEEEESSCCS
T ss_pred             CceEEecccchhhhhhhhHHhhhhhhhhhHHHHHHhhhhhccchhhhhhHHHHHHhcCCCEEEEEecccceeeecccccc
Confidence            99999999977666666777788999999999988877766666777788888999999999999999999999986557


Q ss_pred             eEEEccCCCcCcccCCChhHHHHHHHHHHHH--hcCCCCCHHHHHhhccCCcccHHHHHHH-HHHhccccCCCCCChhHH
Q psy8082         254 LKTITVDHVEYPIESEGVGDCFVGALAYYFK--AGQKGGNLDSCRLRNGRGILKELQCLVA-RRVQLEGKNSSERKSNSA  330 (379)
Q Consensus       254 ~~~~~~~~~~~vvDttGAGDaF~ag~~~~l~--~~~~g~~l~~A~~~~~~~~~~~~A~~~A-~~v~~~G~~~~~p~~~~~  330 (379)
                      .+++|+ +++++||||||||+|+|||++++.  +   |+++++|+.+         |+++| ++|++.|+.+++|+++|+
T Consensus       237 ~~~~p~-~~v~vvDttGAGDaF~ag~~~~l~~~~---~~~~~~a~~~---------a~~~aa~~v~~~G~~~~~p~~~ei  303 (308)
T d2fv7a1         237 PKHIPT-EKVKAVDTTGAGDSFVGALAFYLAYYP---NLSLEDMLNR---------SNFIAAVSVQAAGTQSSYPYKKDL  303 (308)
T ss_dssp             CEEECC-CCCCCSCCTTHHHHHHHHHHHHHHHCT---TSCHHHHHHH---------HHHHHHHHHTSSSGGGGCCCGGGS
T ss_pred             eeeccc-ccccccCCCChhHHHHHHHHHHHHHhC---CCCHHHHHHH---------HHHHHHHHhCCCCCCCCCCCHHHH
Confidence            899999 889999999999999999999874  6   9999999999         99999 999999999999999985
>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vm7a_ c.72.1.1 (A:) Ribokinase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2f02a1 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase LacC {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2dcna1 c.72.1.1 (A:2-309) Hypothetical fructokinase ST2478 {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1bx4a_ c.72.1.1 (A:) Adenosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tyya_ c.72.1.1 (A:) Aminoimidazole riboside kinase {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2absa1 c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma gondii [TaxId: 5811]} Back     information, alignment and structure
>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vi9a_ c.72.1.5 (A:) Pyridoxamine kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ub0a_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jxha_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1lhpa_ c.72.1.5 (A:) Pyridoxal kinase {Sheep (Ovis aries) [TaxId: 9940]} Back     information, alignment and structure
>d1ekqa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1kyha_ c.72.1.4 (A:) Hypothetical protein YxkO {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1v8aa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2ax3a1 c.72.1.4 (A:212-489) Hypothetical protein TM0922, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1u2xa_ c.72.1.3 (A:) ADP-specific phosphofructokinase {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1gc5a_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d1ua4a_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1l2la_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure